Citrus Sinensis ID: 001980
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 987 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LJX0 | 1252 | ABC transporter B family | yes | no | 0.975 | 0.769 | 0.895 | 0.0 | |
| Q9ZR72 | 1286 | ABC transporter B family | no | no | 0.988 | 0.758 | 0.538 | 0.0 | |
| Q8LPK2 | 1273 | ABC transporter B family | no | no | 0.979 | 0.759 | 0.527 | 0.0 | |
| Q9SGY1 | 1227 | ABC transporter B family | no | no | 0.969 | 0.779 | 0.517 | 0.0 | |
| Q9C7F8 | 1245 | ABC transporter B family | no | no | 0.983 | 0.779 | 0.508 | 0.0 | |
| Q9C7F2 | 1247 | ABC transporter B family | no | no | 0.984 | 0.779 | 0.510 | 0.0 | |
| Q9LSJ5 | 1225 | ABC transporter B family | no | no | 0.974 | 0.785 | 0.463 | 0.0 | |
| Q6YUU5 | 1245 | Putative multidrug resist | no | no | 0.984 | 0.780 | 0.494 | 0.0 | |
| Q9LSJ6 | 1240 | ABC transporter B family | no | no | 0.984 | 0.783 | 0.465 | 0.0 | |
| Q9LSJ2 | 1229 | ABC transporter B family | no | no | 0.984 | 0.790 | 0.460 | 0.0 |
| >sp|Q9LJX0|AB19B_ARATH ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1800 bits (4661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 884/987 (89%), Positives = 945/987 (95%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
MAKGLGLGCTYGIACMSWALVFWYAGVFIRNG TDGGKAFTAIFSAIVGGMSLGQSFSNL
Sbjct: 266 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNL 325
Query: 61 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 120
GAFSKGKAAGYKLMEII Q+P+IIQDP +G+CLD+V+GNIEFK+VTFSYPSRPDV+IFR+
Sbjct: 326 GAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQVHGNIEFKDVTFSYPSRPDVMIFRN 385
Query: 121 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
F+IFFP+GKTVAVVGGSGSGKSTVVSLIERFYDPN+G +LLD V+IKTLQL++LR+QIGL
Sbjct: 386 FNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQLKFLREQIGL 445
Query: 181 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240
VNQEPALFATTILENILYGKP+ATM EVEAAASAANAHSFITLLP GY TQVGERGVQLS
Sbjct: 446 VNQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQVGERGVQLS 505
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300
GGQKQRIAIARAMLK+PKILLLDEATSALDA SESIVQEALDR+MVGRTTVVVAHRL TI
Sbjct: 506 GGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTVVVAHRLCTI 565
Query: 301 RNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSH 360
RNVD++AVIQQGQVVETGTHEELIAK+GAYASLIRFQEMV RDF+NPSTRR+RSTRLSH
Sbjct: 566 RNVDSIAVIQQGQVVETGTHEELIAKSGAYASLIRFQEMVGTRDFSNPSTRRTRSTRLSH 625
Query: 361 SLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWP 420
SLSTKSLSLRSGSLRNLSYSYSTGADGRIEM+SNAETDRK AP+ YF RLLKLN+PEWP
Sbjct: 626 SLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNAETDRKTRAPENYFYRLLKLNSPEWP 685
Query: 421 YSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAY 480
YSIMGA+GS+LSGFIGPTFAIVM+ MIEVFYY + SMERKTKE+VFIYIGAGLYAV AY
Sbjct: 686 YSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDYDSMERKTKEYVFIYIGAGLYAVGAY 745
Query: 481 LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIA 540
LIQHYFFSIMGENLTTRVRRMML+AILRNEVGWFDE+EHNSSL+AARLATDAADVKSAIA
Sbjct: 746 LIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWFDEDEHNSSLIAARLATDAADVKSAIA 805
Query: 541 DRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAH 600
+RISVILQNMTSLLTSFIVAFIVEWRVSLLILGT+PLLVLANFAQQLSLKGFAGDTAKAH
Sbjct: 806 ERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTFPLLVLANFAQQLSLKGFAGDTAKAH 865
Query: 601 AKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALH 660
AKTSMIAGEGVSNIRTVAAFNAQ+KILSLFCHELRVPQ ++L RS T+G LFG+SQ AL+
Sbjct: 866 AKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHELRVPQKRSLYRSQTSGFLFGLSQLALY 925
Query: 661 ASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFS 720
SEALILWYG HLV KGVSTFSKVIKVFVVLV+TANSVAETVSLAPEIIRGGE+VGSVFS
Sbjct: 926 GSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFS 985
Query: 721 TLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVG 780
LDR TRIDPDD DA+PVETIRG+IE RHVDFAYPSRPDV+VF+DFNLRIRAG SQALVG
Sbjct: 986 VLDRQTRIDPDDADADPVETIRGDIEFRHVDFAYPSRPDVMVFRDFNLRIRAGHSQALVG 1045
Query: 781 ASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDN 840
ASGSGKSSVIA+IERFYDP AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA+IFDN
Sbjct: 1046 ASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAATIFDN 1105
Query: 841 IAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900
IAYGK+GATE+EV++AARAAN HGF+S LP YKTPVGERGVQLSGGQKQRIAIARAVLK
Sbjct: 1106 IAYGKDGATESEVIDAARAANAHGFISGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLK 1165
Query: 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIV 960
NP +LLLDEATSALDAESECVLQEALERLMRGRTTV+VAHRLSTIRGVDCIGV+QDGRIV
Sbjct: 1166 NPTVLLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRGVDCIGVIQDGRIV 1225
Query: 961 EQGSHSELVSRPDGAYSRLLQLQHHHI 987
EQGSHSELVSRP+GAYSRLLQLQ H I
Sbjct: 1226 EQGSHSELVSRPEGAYSRLLQLQTHRI 1252
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Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates in auxin efflux and thus regulates the polar auxin basipetal transport (from auxin-producing leaves to auxin-sensitive tissues, and from root tips to root elongating zone). Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZR72|AB1B_ARATH ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1065 bits (2755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/1002 (53%), Positives = 730/1002 (72%), Gaps = 26/1002 (2%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
+AKG+GLG TY + +AL+ WY G +R+ +T+GG A +F+ ++GG++LGQS ++
Sbjct: 269 LAKGMGLGATYFVVFCCYALLLWYGGYLVRHHLTNGGLAIATMFAVMIGGLALGQSAPSM 328
Query: 61 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 120
AF+K K A K+ II KP+I ++ +G LD V G +E KNV FSYPSRPDV I +
Sbjct: 329 AAFAKAKVAAAKIFRIIDHKPTIERNSESGVELDSVTGLVELKNVDFSYPSRPDVKILNN 388
Query: 121 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
F + PAGKT+A+VG SGSGKSTVVSLIERFYDPN+G VLLD D+KTL+LRWLR QIGL
Sbjct: 389 FCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQDLKTLKLRWLRQQIGL 448
Query: 181 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240
V+QEPALFAT+I ENIL G+P+A E+E AA ANAHSFI LP+G+ TQVGERG+QLS
Sbjct: 449 VSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKLPDGFDTQVGERGLQLS 508
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300
GGQKQRIAIARAMLKNP ILLLDEATSALD+ SE +VQEALDR M+GRTT+++AHRLSTI
Sbjct: 509 GGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLIIAHRLSTI 568
Query: 301 RNVDTVAVIQQGQVVETGTHEELIAKA--GAYASLIRFQEMVRNRDFAN-------PSTR 351
R D VAV+QQG V E GTH+EL +K G YA LI+ QE +N PS+
Sbjct: 569 RKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEAAHETAMSNARKSSARPSSA 628
Query: 352 R--------SRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPA 403
R +R++ S ++ LS S S +LS S+ + R E + A D+ N
Sbjct: 629 RNSVSSPIMTRNSSYGRSPYSRRLSDFSTSDFSLSIDASSYPNYRNEKL--AFKDQANS- 685
Query: 404 PDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTK 463
F RL K+N+PEW Y+++G++GSV+ G + FA V++ ++ V+Y + M ++
Sbjct: 686 ----FWRLAKMNSPEWKYALLGSVGSVICGSLSAFFAYVLSAVLSVYYNPDHEYMIKQID 741
Query: 464 EFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSL 523
++ ++ IG A+V +QH F+ I+GENLT RVR ML+A+L+NE+ WFD+EE+ S+
Sbjct: 742 KYCYLLIGLSSAALVFNTLQHSFWDIVGENLTKRVREKMLSAVLKNEMAWFDQEENESAR 801
Query: 524 VAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANF 583
+AARLA DA +V+SAI DRISVI+QN +L + F+++WR++L+++ +P++V A
Sbjct: 802 IAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATV 861
Query: 584 AQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLR 643
Q++ + GF+GD AHAK + +AGE ++N+RTVAAFN++ KI+ L+ L P +
Sbjct: 862 LQKMFMTGFSGDLEAAHAKGTQLAGEAIANVRTVAAFNSEAKIVRLYTANLEPPLKRCFW 921
Query: 644 RSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVS 703
+ AG +G++QF L+AS AL LWY LV G+S FSK I+VF+VL+V+AN AET++
Sbjct: 922 KGQIAGSGYGVAQFCLYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLT 981
Query: 704 LAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPV-ETIRGEIELRHVDFAYPSRPDVVV 762
LAP+ I+GG+++ SVF LDR T I+PDDPD PV + +RGE+EL+H+DF+YPSRPD+ +
Sbjct: 982 LAPDFIKGGQAMRSVFELLDRKTEIEPDDPDTTPVPDRLRGEVELKHIDFSYPSRPDIQI 1041
Query: 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822
F+D +LR RAG++ ALVG SG GKSSVI+LI+RFY+P++G+VMIDGKDIR+ NLK++R
Sbjct: 1042 FRDLSLRARAGKTLALVGPSGCGKSSVISLIQRFYEPSSGRVMIDGKDIRKYNLKAIRKH 1101
Query: 823 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGV 882
I +V QEP LF +I++NIAYG E ATEAE+++AA A+ H F+SALP YKT VGERGV
Sbjct: 1102 IAIVPQEPCLFGTTIYENIAYGHECATEAEIIQAATLASAHKFISALPEGYKTYVGERGV 1161
Query: 883 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRL 942
QLSGGQKQRIAIARA+++ I+LLDEATSALDAESE +QEAL++ GRT+++VAHRL
Sbjct: 1162 QLSGGQKQRIAIARALVRKAEIMLLDEATSALDAESERSVQEALDQACSGRTSIVVAHRL 1221
Query: 943 STIRGVDCIGVVQDGRIVEQGSHSELV-SRPDGAYSRLLQLQ 983
STIR I V+ DG++ EQGSHS L+ + PDG Y+R++QLQ
Sbjct: 1222 STIRNAHVIAVIDDGKVAEQGSHSHLLKNHPDGIYARMIQLQ 1263
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Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates directly in auxin efflux and thus regulates the polar (presumably basipetal) auxin transport (from root tips to root elongating zone). Transports also some auxin metabolites such as oxindoleacetic acid and indoleacetaldehyde. Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Confers resistance to herbicides such as dicamba, pendimethalin, oryzalin, and monosodium acid methanearsonate (MSMA), but not to herbicides such as glyphosate, atrazine, bentazon and fluazifop-p-butyl. Mediates also resistance to xenobiotics such as cycloheximide and the cytokinin N6-(2-isopentenyl)adenine (2IP). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPK2|AB2B_ARATH ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1036 bits (2680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/989 (52%), Positives = 706/989 (71%), Gaps = 22/989 (2%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
+ KGLGLG + + +SWAL+ W+ V + + DGGK+FT + + ++ G+SLGQ+ ++
Sbjct: 302 LTKGLGLGSMHCVLFLSWALLVWFTSVVVHKDIADGGKSFTTMLNVVIAGLSLGQAAPDI 361
Query: 61 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 120
AF + KAA Y + ++I++ +GR L +V+G+I+FK+ TFSYPSRPDV+IF
Sbjct: 362 SAFVRAKAAAYPIFKMIERNTVTKTSAKSGRKLGKVDGHIQFKDATFSYPSRPDVVIFDR 421
Query: 121 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
++ PAGK VA+VGGSGSGKSTV+SLIERFY+P +G VLLD +I L ++WLR QIGL
Sbjct: 422 LNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLDGNNISELDIKWLRGQIGL 481
Query: 181 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240
VNQEPALFATTI ENILYGK +AT E+ AA + A SFI LP G+ TQVGERG+QLS
Sbjct: 482 VNQEPALFATTIRENILYGKDDATAEEITRAAKLSEAISFINNLPEGFETQVGERGIQLS 541
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300
GGQKQRIAI+RA++KNP ILLLDEATSALDA SE VQEALDR+MVGRTTVVVAHRLST+
Sbjct: 542 GGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTV 601
Query: 301 RNVDTVAVIQQGQVVETGTHEELIAKA-GAYASLIRFQEMVRNRDFANPSTRRSRSTRLS 359
RN D +AV+ +G++VE G HE LI+ GAY+SL+R QE + NPS R+ S
Sbjct: 602 RNADIIAVVHEGKIVEFGNHENLISNPDGAYSSLLRLQETASLQR--NPSLNRTLSR--P 657
Query: 360 HSLSTKSLSLRSGSLRNLSYSYSTGADGR--IEMVSNAETDRKNPAPDGYFLRLLKLNAP 417
HS+ R LS + S+ R + A+ +K G RL + P
Sbjct: 658 HSIKYS---------RELSRTRSSFCSERESVTRPDGADPSKKVKVTVG---RLYSMIRP 705
Query: 418 EWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAV 477
+W Y + G I + ++G P FA+ ++ + V YY +++ K+ ++ A + +
Sbjct: 706 DWMYGVCGTICAFIAGSQMPLFALGVSQAL-VSYYSGWDETQKEIKKIAILFCCASVITL 764
Query: 478 VAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKS 537
+ Y I+H F MGE LT RVR M AIL+NE+GWFDE ++ SS++A+RL +DA +K+
Sbjct: 765 IVYTIEHICFGTMGERLTLRVRENMFRAILKNEIGWFDEVDNTSSMLASRLESDATLLKT 824
Query: 538 AIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTA 597
+ DR +++LQN+ ++TSFI+AFI+ WR++L++L TYPL++ + +++L ++G+ GD
Sbjct: 825 IVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVLATYPLVISGHISEKLFMQGYGGDLN 884
Query: 598 KAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQF 657
KA+ K +M+AGE VSNIRTVAAF A+ KIL L+ EL P + RR AG+ +G+SQF
Sbjct: 885 KAYLKANMLAGESVSNIRTVAAFCAEEKILELYSRELLEPSKSSFRRGQIAGLFYGVSQF 944
Query: 658 ALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGS 717
+ +S L LWYG L+ KG++ F V+K F+VL+VTA ++ ET++LAP++++G + V S
Sbjct: 945 FIFSSYGLALWYGSTLMDKGLAGFKSVMKTFMVLIVTALAMGETLALAPDLLKGNQMVAS 1004
Query: 718 VFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQA 777
VF LDR T+I + +E + + G IEL+ V F+YPSRPDVV+F+DF+L +RAG+S A
Sbjct: 1005 VFEILDRKTQIVGE--TSEELNNVEGTIELKGVHFSYPSRPDVVIFRDFDLIVRAGKSMA 1062
Query: 778 LVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASI 837
LVG SGSGKSSVI+LI RFYDPTAGKVMI+GKDI++L+LK+LR IGLVQQEPALFA +I
Sbjct: 1063 LVGQSGSGKSSVISLILRFYDPTAGKVMIEGKDIKKLDLKALRKHIGLVQQEPALFATTI 1122
Query: 838 FDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897
++NI YG EGA+++EVVE+A AN H F+++LP Y T VGERGVQ+SGGQ+QRIAIARA
Sbjct: 1123 YENILYGNEGASQSEVVESAMLANAHSFITSLPEGYSTKVGERGVQMSGGQRQRIAIARA 1182
Query: 898 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDG 957
+LKNPAILLLDEATSALD ESE V+Q+AL+RLM RTTV+VAHRLSTI+ D I V+ G
Sbjct: 1183 ILKNPAILLLDEATSALDVESERVVQQALDRLMANRTTVVVAHRLSTIKNADTISVLHGG 1242
Query: 958 RIVEQGSHSELVSRPDGAYSRLLQLQHHH 986
+IVEQGSH +LV G Y +L+ LQ
Sbjct: 1243 KIVEQGSHRKLVLNKSGPYFKLISLQQQQ 1271
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SGY1|AB10B_ARATH ABC transporter B family member 10 OS=Arabidopsis thaliana GN=ABCB10 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1033 bits (2670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/990 (51%), Positives = 714/990 (72%), Gaps = 33/990 (3%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
+AKGLGLG + + +SWAL+ W+ + + G+ +GG++FT + + ++ G+SLGQ+ ++
Sbjct: 266 LAKGLGLGSLHFVLFLSWALLIWFTSIVVHKGIANGGESFTTMLNVVIAGLSLGQAAPDI 325
Query: 61 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 120
F + AA Y + ++I++ +D T GR L VNG+I FK+VTF+YPSRPDV+IF
Sbjct: 326 STFMRASAAAYPIFQMIERNT---EDKT-GRKLGNVNGDILFKDVTFTYPSRPDVVIFDK 381
Query: 121 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
+ PAGK VA+VGGSGSGKST++SLIERFY+P G V+LD DI+ L L+WLR IGL
Sbjct: 382 LNFVIPAGKVVALVGGSGSGKSTMISLIERFYEPTDGAVMLDGNDIRYLDLKWLRGHIGL 441
Query: 181 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240
VNQEP LFATTI ENI+YGK +AT E+ AA + A SFI LP G+ TQVGERG+QLS
Sbjct: 442 VNQEPVLFATTIRENIMYGKDDATSEEITNAAKLSEAISFINNLPEGFETQVGERGIQLS 501
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300
GGQKQRI+I+RA++KNP ILLLDEATSALDA SE IVQEALDR+MVGRTTVVVAHRLST+
Sbjct: 502 GGQKQRISISRAIVKNPSILLLDEATSALDAESEKIVQEALDRVMVGRTTVVVAHRLSTV 561
Query: 301 RNVDTVAVIQQGQVVETGTHEELIAKA-GAYASLIRFQEMVRNRDFANPSTRRSRSTRLS 359
RN D +AV+ G+++E+G+H+ELI+ GAY+SL+R QE + S L+
Sbjct: 562 RNADIIAVVGGGKIIESGSHDELISNPDGAYSSLLRIQE--------------AASPNLN 607
Query: 360 HSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEW 419
H T SL + + L L + +T + + V+ +T ++ G RL + P+W
Sbjct: 608 H---TPSLPVSTKPLPELPITETTSSIH--QSVNQPDTTKQAKVTVG---RLYSMIRPDW 659
Query: 420 PYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVA 479
Y + G +GS ++G P FA+ +A + V YY + + + + K ++ + V+
Sbjct: 660 KYGLCGTLGSFIAGSQMPLFALGIAQAL-VSYYMDWETTQNEVKRISILFCCGSVITVIV 718
Query: 480 YLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAI 539
+ I+H F IMGE LT RVR+ M +AILRNE+GWFD+ ++ SS++A+RL +DA +++ +
Sbjct: 719 HTIEHTTFGIMGERLTLRVRQKMFSAILRNEIGWFDKVDNTSSMLASRLESDATLLRTIV 778
Query: 540 ADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKA 599
DR +++L+N+ ++T+FI++FI+ WR++L++L TYPL++ + ++++ ++G+ G+ +KA
Sbjct: 779 VDRSTILLENLGLVVTAFIISFILNWRLTLVVLATYPLIISGHISEKIFMQGYGGNLSKA 838
Query: 600 HAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFAL 659
+ K +M+AGE +SNIRTV AF A+ K+L L+ EL P ++ RR AGIL+G+SQF +
Sbjct: 839 YLKANMLAGESISNIRTVVAFCAEEKVLDLYSKELLEPSERSFRRGQMAGILYGVSQFFI 898
Query: 660 HASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVF 719
+S L LWYG L+ KG+S+F V+K F+VL+VTA + E ++LAP++++G + V SVF
Sbjct: 899 FSSYGLALWYGSILMEKGLSSFESVMKTFMVLIVTALVMGEVLALAPDLLKGNQMVVSVF 958
Query: 720 STLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALV 779
LDR T++ D E + + G IEL+ V F+YPSRPDV +F DFNL + +G+S ALV
Sbjct: 959 ELLDRRTQVVGDT--GEELSNVEGTIELKGVHFSYPSRPDVTIFSDFNLLVPSGKSMALV 1016
Query: 780 GASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 839
G SGSGKSSV++L+ RFYDPTAG +MIDG+DI++L LKSLR IGLVQQEPALFA +I++
Sbjct: 1017 GQSGSGKSSVLSLVLRFYDPTAGIIMIDGQDIKKLKLKSLRRHIGLVQQEPALFATTIYE 1076
Query: 840 NIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899
NI YGKEGA+E+EV+EAA+ AN H F+S+LP Y T VGERG+Q+SGGQ+QRIAIARAVL
Sbjct: 1077 NILYGKEGASESEVMEAAKLANAHSFISSLPEGYSTKVGERGIQMSGGQRQRIAIARAVL 1136
Query: 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRI 959
KNP ILLLDEATSALD ESE V+Q+AL+RLMR RTTV+VAHRLSTI+ D I V+QDG+I
Sbjct: 1137 KNPEILLLDEATSALDVESERVVQQALDRLMRDRTTVVVAHRLSTIKNSDMISVIQDGKI 1196
Query: 960 VEQGSHSELVSRPDGAYSRLLQLQH---HH 986
+EQGSH+ LV +G YS+L+ LQ HH
Sbjct: 1197 IEQGSHNILVENKNGPYSKLISLQQRQRHH 1226
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7F8|AB13B_ARATH ABC transporter B family member 13 OS=Arabidopsis thaliana GN=ABCB13 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 997 bits (2578), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/985 (50%), Positives = 690/985 (70%), Gaps = 14/985 (1%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
+AKGLG+G TY + +WAL+ WYA + +R+G T+G KAFT I + I G +LGQ+ +L
Sbjct: 272 LAKGLGVGLTYSLLFCAWALLLWYASLLVRHGKTNGAKAFTTILNVIFSGFALGQAAPSL 331
Query: 61 GAFSKGKAAGYKLMEIIKQKPS-IIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFR 119
A +KG+ A + +I S Q G L V G IEF+ V+F+YPSRP+ ++F
Sbjct: 332 SAIAKGRVAAANIFRMIGNNNSESSQRLDEGTTLQNVAGRIEFQKVSFAYPSRPN-MVFE 390
Query: 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179
+ S +GKT A VG SGSGKST++S+++RFY+PN+G +LLD DIK+L+L+W R+Q+G
Sbjct: 391 NLSFTIRSGKTFAFVGPSGSGKSTIISMVQRFYEPNSGEILLDGNDIKSLKLKWFREQLG 450
Query: 180 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQL 239
LV+QEPALFATTI NIL GK A M ++ AA AANA SFI LPNGY+TQVGE G QL
Sbjct: 451 LVSQEPALFATTIASNILLGKENANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGGTQL 510
Query: 240 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLST 299
SGGQKQRIAIARA+L+NPKILLLDEATSALDA SE IVQ+ALD +M RTT+VVAHRLST
Sbjct: 511 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVVAHRLST 570
Query: 300 IRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLS 359
IRNVD + V++ GQV ETG+H EL+ + G YA+L+ QE T ++R
Sbjct: 571 IRNVDKIVVLRDGQVRETGSHSELMLRGGDYATLVNCQE-----------TEPQENSRSI 619
Query: 360 HSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEW 419
S + KS + S S R S ++ E N ++ + + L+KLN+PEW
Sbjct: 620 MSETCKSQAGSSSSRRVSSSRRTSSFRVDQEKTKNDDSKKDFSSSS-MIWELIKLNSPEW 678
Query: 420 PYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVA 479
PY+++G+IG+VL+G P F++ +A ++ FY P ++R ++ I+ GAG+
Sbjct: 679 PYALLGSIGAVLAGAQTPLFSMGIAYVLTAFYSPFPNVIKRDVEKVAIIFAGAGIVTAPI 738
Query: 480 YLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAI 539
YL+QHYF+++MGE LT+RVR + +AIL NE+GWFD +E+N+ + + LA DA V+SA+
Sbjct: 739 YLLQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAADATLVRSAL 798
Query: 540 ADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKA 599
ADR+S I+QN++ +T+ +AF WRV+ ++ +PLL+ A+ +QL LKGF GD +A
Sbjct: 799 ADRLSTIVQNLSLTVTALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKGFGGDYTRA 858
Query: 600 HAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFAL 659
+++ + +A E ++NIRTVAA+ A+ +I F EL P R +G +G+SQF
Sbjct: 859 YSRATSVAREAIANIRTVAAYGAEKQISEQFTCELSKPTKNAFVRGHISGFGYGLSQFLA 918
Query: 660 HASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVF 719
S AL LWY L+ + F IK F+VL+VTA SV+ET++L P+I++G +++GSVF
Sbjct: 919 FCSYALGLWYVSVLINHKETNFGDSIKSFMVLIVTAFSVSETLALTPDIVKGTQALGSVF 978
Query: 720 STLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALV 779
L R T+I PD P++ V ++G+IE R+V F YP+RP++ +FK+ NLR+ AG+S A+V
Sbjct: 979 RVLHRETKISPDQPNSRMVSQVKGDIEFRNVSFVYPTRPEIDIFKNLNLRVSAGKSLAVV 1038
Query: 780 GASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 839
G SGSGKS+VI LI RFYDP+ G + IDG+DI+ LNL+SLR K+ LVQQEPALF+ +I++
Sbjct: 1039 GPSGSGKSTVIGLIMRFYDPSNGNLCIDGQDIKTLNLRSLRKKLALVQQEPALFSTTIYE 1098
Query: 840 NIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899
NI YG E A+EAE++EAA+AAN H F+ + YKT G++GVQLSGGQKQR+AIARAVL
Sbjct: 1099 NIKYGNENASEAEIMEAAKAANAHEFIIKMEEGYKTHAGDKGVQLSGGQKQRVAIARAVL 1158
Query: 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRI 959
K+P++LLLDEATSALD SE ++QEAL++LM+GRTTVLVAHRLSTIR D + V+ GR+
Sbjct: 1159 KDPSVLLLDEATSALDTSSEKLVQEALDKLMKGRTTVLVAHRLSTIRKADTVAVLHKGRV 1218
Query: 960 VEQGSHSELVSRPDGAYSRLLQLQH 984
VE+GSH ELVS P+G Y +L LQ
Sbjct: 1219 VEKGSHRELVSIPNGFYKQLTSLQE 1243
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7F2|AB14B_ARATH ABC transporter B family member 14 OS=Arabidopsis thaliana GN=ABCB14 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 978 bits (2527), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/985 (51%), Positives = 691/985 (70%), Gaps = 13/985 (1%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
+AKGLG+G TY + +WAL+FWYA + +R+G T+G KAFT I + I G +LGQ+ +L
Sbjct: 273 LAKGLGVGLTYSLLFCAWALLFWYASLLVRHGKTNGAKAFTTILNVIYSGFALGQAVPSL 332
Query: 61 GAFSKGKAAGYKLMEII-KQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFR 119
A SKG+ A + ++I + NG L V G IEF V+F+YPSRP+ ++F
Sbjct: 333 SAISKGRVAAANIFKMIGNNNLESSERLENGTTLQNVVGKIEFCGVSFAYPSRPN-MVFE 391
Query: 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179
+ S +GKT A VG SGSGKST++S+++RFY+P +G +LLD DIK L+L+WLR+Q+G
Sbjct: 392 NLSFTIHSGKTFAFVGPSGSGKSTIISMVQRFYEPRSGEILLDGNDIKNLKLKWLREQMG 451
Query: 180 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQL 239
LV+QEPALFATTI NIL GK +A M ++ AA AANA SFI LPNGY+TQVGE G QL
Sbjct: 452 LVSQEPALFATTIASNILLGKEKANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGGTQL 511
Query: 240 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLST 299
SGGQKQRIAIARA+L+NPKILLLDEATSALDA SE IVQ+ALD +M RTT+V+AHRLST
Sbjct: 512 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVIAHRLST 571
Query: 300 IRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLS 359
IRNVD + V++ GQV ETG+H ELI++ G YA+L+ Q+ + + RS S
Sbjct: 572 IRNVDKIVVLRDGQVRETGSHSELISRGGDYATLVNCQDTEPQENLRSVMYESCRSQAGS 631
Query: 360 HSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEW 419
+S S R+ S R + G +++S++ L+KLNAPEW
Sbjct: 632 YSSRRVFSSRRTSSFREDQEKTEKDSKGE-DLISSSSM----------IWELIKLNAPEW 680
Query: 420 PYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVA 479
Y+++G+IG+VL+G F++ +A ++ FY P+ ++R+ + I++GAG+
Sbjct: 681 LYALLGSIGAVLAGSQPALFSMGLAYVLTTFYSPFPSLIKREVDKVAIIFVGAGIVTAPI 740
Query: 480 YLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAI 539
Y++QHYF+++MGE LT+RVR + +AIL NE+GWFD +E+N+ + + LA DA V+SAI
Sbjct: 741 YILQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAADATLVRSAI 800
Query: 540 ADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKA 599
ADR+S I+QN++ +T+ +AF WRV+ ++ +PLL+ A+ +QL LKGF GD +A
Sbjct: 801 ADRLSTIVQNLSLTITALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKGFGGDYTRA 860
Query: 600 HAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFAL 659
+++ + +A E +SNIRTVAAF+A+ +I F EL P L R +G +G+SQ
Sbjct: 861 YSRATSLAREAISNIRTVAAFSAEKQISEQFTCELSKPTKSALLRGHISGFGYGLSQCLA 920
Query: 660 HASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVF 719
S AL LWY L+ + + F IK F+VL+VTA SVAET++L P+I++G +++GSVF
Sbjct: 921 FCSYALGLWYISVLIKRNETNFEDSIKSFMVLLVTAYSVAETLALTPDIVKGTQALGSVF 980
Query: 720 STLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALV 779
L R T I PD P++ V I+G+IE R+V FAYP+RP++ +FK+ NLR+ AG+S A+V
Sbjct: 981 RVLHRETEIPPDQPNSRLVTHIKGDIEFRNVSFAYPTRPEIAIFKNLNLRVSAGKSLAVV 1040
Query: 780 GASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 839
G SGSGKS+VI LI RFYDP+ G + IDG DI+ +NL+SLR K+ LVQQEPALF+ SI +
Sbjct: 1041 GPSGSGKSTVIGLIMRFYDPSNGNLCIDGHDIKSVNLRSLRKKLALVQQEPALFSTSIHE 1100
Query: 840 NIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899
NI YG E A+EAE++EAA+AAN H F+S + Y T VG++GVQLSGGQKQR+AIARAVL
Sbjct: 1101 NIKYGNENASEAEIIEAAKAANAHEFISRMEEGYMTHVGDKGVQLSGGQKQRVAIARAVL 1160
Query: 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRI 959
K+P++LLLDEATSALD +E +QEAL++LM+GRTT+LVAHRLSTIR D I V+ G++
Sbjct: 1161 KDPSVLLLDEATSALDTSAEKQVQEALDKLMKGRTTILVAHRLSTIRKADTIVVLHKGKV 1220
Query: 960 VEQGSHSELVSRPDGAYSRLLQLQH 984
VE+GSH ELVS+ DG Y +L LQ
Sbjct: 1221 VEKGSHRELVSKSDGFYKKLTSLQE 1245
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSJ5|AB18B_ARATH ABC transporter B family member 18 OS=Arabidopsis thaliana GN=ABCB18 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 929 bits (2402), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/994 (46%), Positives = 677/994 (68%), Gaps = 32/994 (3%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
+AKG+ +G + GI W + WY + N + GG + I GG SLGQS SNL
Sbjct: 249 LAKGIAIG-SNGITYAIWGFLTWYGSRMVMNHGSKGGTVSSVIVCVTFGGTSLGQSLSNL 307
Query: 61 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 120
FS+ G ++M++I + P I D G+ L++ G +EF +V F+YPSRP+ IF D
Sbjct: 308 KYFSEAFVVGERIMKVINRVPGIDSDNLEGQILEKTRGEVEFNHVKFTYPSRPETPIFDD 367
Query: 121 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
+ P+GKTVA+VGGSGSGKSTV+SL++RFYDP AG +L+D + I LQ++WLR Q+GL
Sbjct: 368 LCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPIAGEILIDGLPINKLQVKWLRSQMGL 427
Query: 181 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240
V+QEP LFAT+I ENIL+GK +A+M EV AA A+NAHSFI+ PN Y TQVGERGVQLS
Sbjct: 428 VSQEPVLFATSIKENILFGKEDASMDEVVEAAKASNAHSFISQFPNSYQTQVGERGVQLS 487
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300
GGQKQRIAIARA++K+P ILLLDEATSALD+ SE +VQEALD +GRTT+V+AHRLSTI
Sbjct: 488 GGQKQRIAIARAIIKSPIILLLDEATSALDSESERVVQEALDNASIGRTTIVIAHRLSTI 547
Query: 301 RNVDTVAVIQQGQVVETGTHEELIAKA-GAYASLIRFQEMVRNRDFANPSTRRSRSTRLS 359
RN D + V+ G+++ETG+HEEL+ K G Y SL+R Q+ V N++ + S +++ LS
Sbjct: 548 RNADVICVVHNGRIIETGSHEELLEKLDGQYTSLVRLQQ-VDNKESDHISVEEGQASSLS 606
Query: 360 HSLSTKSLSLRSGSLRNLSYS-----YSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKL 414
++L YS +ST ++ + + + D K+ P F RL+ +
Sbjct: 607 ---------------KDLKYSPKEFIHSTSSNIVRDFPNLSPKDGKSLVPS--FKRLMSM 649
Query: 415 NAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGL 474
N PEW +++ G +G+ L G + P ++ M+ V++ + ++ KT+ +V +++G L
Sbjct: 650 NRPEWKHALYGCLGAALFGAVQPIYSYSSGSMVSVYFLASHDQIKEKTRIYVLLFVGLAL 709
Query: 475 YAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAAD 534
+ ++ + QHY F+ MGE LT R+R ML IL EV WFD++E++S + +RLA DA
Sbjct: 710 FTFLSNISQHYGFAYMGEYLTKRIRERMLGKILTFEVNWFDKDENSSGAICSRLAKDANM 769
Query: 535 VKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAG 594
V+S + DR+S+++Q ++++ + + ++ WR S++++ P++V+ + Q++ LK +
Sbjct: 770 VRSLVGDRMSLLVQTISAVSITCAIGLVISWRFSIVMMSVQPVIVVCFYTQRVLLKSMSR 829
Query: 595 DTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGI 654
+ K ++S +A E VSNIRT+ AF++Q +I++L P+ + R+S AGI+ G
Sbjct: 830 NAIKGQDESSKLAAEAVSNIRTITAFSSQERIINLLKMVQEGPRKDSARQSWLAGIMLGT 889
Query: 655 SQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGES 714
SQ + AL WYG L+ G + +++F++ T +AE ++ ++++G ++
Sbjct: 890 SQSLITCVSALNFWYGGKLIADGKMMSKEFLEIFLIFASTGRVIAEAGTMTKDLVKGSDA 949
Query: 715 VGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQ 774
V SVF+ LDR+T I+P++PD + ++G+I +VDFAYP+RPDV++F++F++ I G+
Sbjct: 950 VASVFAVLDRNTTIEPENPDGYVPKKVKGQISFSNVDFAYPTRPDVIIFQNFSIDIEDGK 1009
Query: 775 SQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA 834
S A+VG SGSGKS++I+LIERFYDP G V IDG+DIR +L+SLR I LV QEP LFA
Sbjct: 1010 STAIVGPSGSGKSTIISLIERFYDPLKGIVKIDGRDIRSCHLRSLRQHIALVSQEPTLFA 1069
Query: 835 ASIFDNIAYGKEGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890
+I +NI YG GA+ E+E++EAA+AAN H F+++L N Y T G+RGVQLSGGQKQ
Sbjct: 1070 GTIRENIMYG--GASNKIDESEIIEAAKAANAHDFITSLSNGYDTCCGDRGVQLSGGQKQ 1127
Query: 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDC 950
RIAIARAVLKNP++LLLDEATSALD++SE V+Q+ALERLM GRT+V++AHRLSTI+ D
Sbjct: 1128 RIAIARAVLKNPSVLLLDEATSALDSQSESVVQDALERLMVGRTSVVIAHRLSTIQKCDT 1187
Query: 951 IGVVQDGRIVEQGSHSELVSR-PDGAYSRLLQLQ 983
I V+++G +VE G+HS L+++ P GAY L+ LQ
Sbjct: 1188 IAVLENGAVVECGNHSSLLAKGPKGAYFSLVSLQ 1221
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6YUU5|MDR_ORYSJ Putative multidrug resistance protein OS=Oryza sativa subsp. japonica GN=Os02g0190300 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/989 (49%), Positives = 682/989 (68%), Gaps = 17/989 (1%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
+AKG+ +G GI WA WY + GG F + +VGG++LG SN+
Sbjct: 261 LAKGIAVGSN-GITFAIWAFNVWYGSRLVMYHGYQGGTVFAVSAAIVVGGLALGSGLSNV 319
Query: 61 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 120
FS+ +A +++E+I++ P I + G L V G +EF+NV F YPSRP+ IF
Sbjct: 320 KYFSEASSAAERILEVIRRVPKIDSESDTGEELANVTGEVEFRNVEFCYPSRPESPIFVS 379
Query: 121 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
F++ PAG+TVA+VGGSGSGKSTV++L+ERFYDP+AG V++D VDI+ L+L+WLR Q+GL
Sbjct: 380 FNLRVPAGRTVALVGGSGSGKSTVIALLERFYDPSAGEVMVDGVDIRRLRLKWLRAQMGL 439
Query: 181 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240
V+QEPALFAT+I ENIL+GK EAT EV AAA AANAH+FI+ LP GY TQVGERGVQ+S
Sbjct: 440 VSQEPALFATSIRENILFGKEEATAEEVVAAAKAANAHNFISQLPQGYDTQVGERGVQMS 499
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300
GGQKQRIAIARA+LK+PKILLLDEATSALD SE +VQEALD +GRTT+V+AHRLSTI
Sbjct: 500 GGQKQRIAIARAILKSPKILLLDEATSALDTESERVVQEALDLASMGRTTIVIAHRLSTI 559
Query: 301 RNVDTVAVIQQGQVVETGTHEELIAK-AGAYASLIRFQEMVRNRDFANPSTRRSRSTRLS 359
RN D +AV+Q G+V E G H+ELIA G Y+SL+R Q+ + + + ST
Sbjct: 560 RNADIIAVMQSGEVKELGPHDELIANDNGLYSSLVRLQQTRDSNEIDEIGV--TGSTSAV 617
Query: 360 HSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEW 419
S+ S+S R + S + S G D R + N E K P P F RLL LNAPEW
Sbjct: 618 GQSSSHSMSRRFSAASRSSSARSLG-DARDD--DNTEKP-KLPVPS--FRRLLMLNAPEW 671
Query: 420 PYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVA 479
++MG+ +V+ G I P +A M MI V++ + A ++ KT+ + I++G AV++
Sbjct: 672 KQALMGSFSAVVFGGIQPAYAYAMGSMISVYFLTDHAEIKDKTRTYALIFVG---LAVLS 728
Query: 480 YLI---QHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVK 536
+LI QHY F MGE LT R+R MLA IL E+GWFD +E++S + ++LA DA V+
Sbjct: 729 FLINIGQHYNFGAMGEYLTKRIREQMLAKILTFEIGWFDRDENSSGAICSQLAKDANVVR 788
Query: 537 SAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDT 596
S + DR+++++Q ++++L + + ++ WR++L+++ PL+++ +A+++ LK + +
Sbjct: 789 SLVGDRMALVIQTISAVLIACTMGLVIAWRLALVMIAVQPLIIVCFYARRVLLKSMSKKS 848
Query: 597 AKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQ 656
A A++S +A E VSN+RT+ AF++Q +IL LF P+ +++R+S AG+ G S
Sbjct: 849 IHAQAESSKLAAEAVSNLRTITAFSSQERILRLFEQSQDGPRKESIRQSWFAGLGLGTSM 908
Query: 657 FALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVG 716
+ + AL WYG L+ + + ++ + F++LV T +A+ S+ ++ +G ++V
Sbjct: 909 SLMTCTWALDFWYGGRLMAEHHISAKELFQTFMILVSTGRVIADAGSMTTDLAKGADAVA 968
Query: 717 SVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQ 776
SVF+ LDR T IDPD+P E ++GE+++R VDFAYPSRPDV++FK F L I+ G+S
Sbjct: 969 SVFAVLDRETEIDPDNPQGYKPEKLKGEVDIRGVDFAYPSRPDVIIFKGFTLSIQPGKST 1028
Query: 777 ALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAAS 836
ALVG SGSGKS++I LIERFYDP G V IDG+DI+ NL++LR IGLV QEP LFA +
Sbjct: 1029 ALVGQSGSGKSTIIGLIERFYDPIRGSVKIDGRDIKAYNLRALRRHIGLVSQEPTLFAGT 1088
Query: 837 IFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896
I +NI YG E A+EAE+ +AAR+AN H F+S L + Y T GERGVQLSGGQKQRIAIAR
Sbjct: 1089 IRENIVYGTETASEAEIEDAARSANAHDFISNLKDGYDTWCGERGVQLSGGQKQRIAIAR 1148
Query: 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 956
A+LKNPAILLLDEATSALD++SE V+QEAL+R+M GRT+V+VAHRLSTI+ D I V++
Sbjct: 1149 AILKNPAILLLDEATSALDSQSEKVVQEALDRVMIGRTSVVVAHRLSTIQNCDLITVLEK 1208
Query: 957 GRIVEQGSHSELVSRP-DGAYSRLLQLQH 984
G +VE+G+H+ L+++ G Y L+ LQ
Sbjct: 1209 GTVVEKGTHASLMAKGLSGTYFSLVNLQQ 1237
|
Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q9LSJ6|AB17B_ARATH ABC transporter B family member 17 OS=Arabidopsis thaliana GN=ABCB17 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 918 bits (2373), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/987 (46%), Positives = 665/987 (67%), Gaps = 15/987 (1%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
+AKG+ +G G+ WA + WY + N + GG F I GG+SLGQS SNL
Sbjct: 261 LAKGITIGSN-GVTHAIWAFLTWYGSRLVMNHGSKGGTVFVVISCITYGGVSLGQSLSNL 319
Query: 61 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 120
FS+ A +++E+IK+ P I + G+ L+ + G +EF +V F+Y SRP+ IF D
Sbjct: 320 KYFSEAFVAWERILEVIKRVPDIDSNKKEGQILERMKGEVEFNHVKFTYLSRPETTIFDD 379
Query: 121 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
+ PAGKTVA+VGGSGSGKSTV+SL++RFYDP AG +L+D V I LQ+ WLR Q+GL
Sbjct: 380 LCLKIPAGKTVALVGGSGSGKSTVISLLQRFYDPIAGEILIDGVSIDKLQVNWLRSQMGL 439
Query: 181 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240
V+QEP LFAT+I ENIL+GK +A++ EV AA A+NAH+FI+ P GY TQVGERGVQ+S
Sbjct: 440 VSQEPVLFATSITENILFGKEDASLDEVVEAAKASNAHTFISQFPLGYKTQVGERGVQMS 499
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300
GGQKQRIAIARA++K+PKILLLDEATSALD+ SE +VQE+LD +GRTT+V+AHRLSTI
Sbjct: 500 GGQKQRIAIARAIIKSPKILLLDEATSALDSESERVVQESLDNASIGRTTIVIAHRLSTI 559
Query: 301 RNVDTVAVIQQGQVVETGTHEELIAKA-GAYASLIRFQEMVRNRDFANPSTRRSRSTRLS 359
RN D + VI GQ+VETG+HEEL+ + G Y SL+ Q+M N + ++ +
Sbjct: 560 RNADVICVIHNGQIVETGSHEELLKRIDGQYTSLVSLQQMENEESNVNINVSVTKDQVM- 618
Query: 360 HSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEW 419
SLS + S+ + S S T +++ N D + P F RL+ +N PEW
Sbjct: 619 -SLSKDFKYSQHNSIGSTSSSIVTNVS---DLIPN---DNQPLVPS--FTRLMVMNRPEW 669
Query: 420 PYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVA 479
+++ G + + L G + P A +I VF+ + ++ KT+ +V +++G +++ +
Sbjct: 670 KHALYGCLSAALVGVLQPVSAYSAGSVISVFFLTSHDQIKEKTRIYVLLFVGLAIFSFLV 729
Query: 480 YLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAI 539
+ QHY F+ MGE LT R+R ML+ IL EV WFD ++++S + +RLA DA V+S +
Sbjct: 730 NISQHYGFAYMGEYLTKRIREQMLSKILTFEVNWFDIDDNSSGAICSRLAKDANVVRSMV 789
Query: 540 ADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKA 599
DR+S+++Q +++++ + I+ ++ WR++++++ PL+V+ + Q++ LK + +KA
Sbjct: 790 GDRMSLLVQTISAVIIACIIGLVIAWRLAIVMISVQPLIVVCFYTQRVLLKSLSEKASKA 849
Query: 600 HAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFAL 659
++S +A E VSNIRT+ AF++Q +I+ L P+ +++ RS AGI+ G S+ +
Sbjct: 850 QDESSKLAAEAVSNIRTITAFSSQERIIKLLKKVQEGPRRESVHRSWLAGIVLGTSRSLI 909
Query: 660 HASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVF 719
+ AL WYG L+ G ++F++ V T +A+ ++ ++ RG ++VGSVF
Sbjct: 910 TCTSALNFWYGGRLIADGKIVSKAFFEIFLIFVTTGRVIADAGTMTTDLARGLDAVGSVF 969
Query: 720 STLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALV 779
+ LDR T I+P +PD E I+G+I +VDFAYP+RPDVV+F++F++ I G+S A+V
Sbjct: 970 AVLDRCTTIEPKNPDGYVAEKIKGQITFLNVDFAYPTRPDVVIFENFSIEIDEGKSTAIV 1029
Query: 780 GASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 839
G SGSGKS++I LIERFYDP G V IDG+DIR +L+SLR I LV QEP LFA +I +
Sbjct: 1030 GTSGSGKSTIIGLIERFYDPLKGTVKIDGRDIRSYHLRSLRKYISLVSQEPMLFAGTIRE 1089
Query: 840 NIAYG--KEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897
NI YG + E+E++EAA+AAN H F+++L N Y T G++GVQLSGGQKQRIAIARA
Sbjct: 1090 NIMYGGTSDKIDESEIIEAAKAANAHDFITSLSNGYDTNCGDKGVQLSGGQKQRIAIARA 1149
Query: 898 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDG 957
VLKNP++LLLDEATSALD++SE V+Q+ALER+M GRT++++AHRLSTI+ D I V+ G
Sbjct: 1150 VLKNPSVLLLDEATSALDSKSERVVQDALERVMVGRTSIMIAHRLSTIQNCDMIVVLGKG 1209
Query: 958 RIVEQGSHSELVSR-PDGAYSRLLQLQ 983
+IVE G+HS L+ + P G Y L +Q
Sbjct: 1210 KIVESGTHSSLLEKGPTGTYFSLAGIQ 1236
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSJ2|AB22B_ARATH ABC transporter B family member 22 OS=Arabidopsis thaliana GN=ABCB22 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 902 bits (2331), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/991 (46%), Positives = 658/991 (66%), Gaps = 19/991 (1%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
+AKG+ +G G+ W + WY + GG F I GG SLG+ SNL
Sbjct: 248 IAKGIAIGSN-GVTYAIWGFMTWYGSRMVMYHGAKGGTIFAVIICITYGGTSLGRGLSNL 306
Query: 61 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 120
FS+ AG +++E+IK+ P I D G+ L+ + G ++FK+V F Y SRP+ IF D
Sbjct: 307 KYFSEAVVAGERIIEVIKRVPDIDSDNPRGQVLENIKGEVQFKHVKFMYSSRPETPIFDD 366
Query: 121 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
+ P+GK+VA+VGGSGSGKSTV+SL++RFYDP G +L+D V IK LQ++WLR Q+GL
Sbjct: 367 LCLRIPSGKSVALVGGSGSGKSTVISLLQRFYDPIVGEILIDGVSIKKLQVKWLRSQMGL 426
Query: 181 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240
V+QEPALFAT+I ENIL+GK +A+ EV AA ++NAH FI+ P GY TQVGERGVQ+S
Sbjct: 427 VSQEPALFATSIEENILFGKEDASFDEVVEAAKSSNAHDFISQFPLGYKTQVGERGVQMS 486
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300
GGQKQRI+IARA++K+P +LLLDEATSALD+ SE +VQEALD +GRTT+V+AHRLSTI
Sbjct: 487 GGQKQRISIARAIIKSPTLLLLDEATSALDSESERVVQEALDNATIGRTTIVIAHRLSTI 546
Query: 301 RNVDTVAVIQQGQVVETGTHEELIAKA-GAYASLIRFQ--EMVRNRDFANPSTRRSRSTR 357
RNVD + V + GQ+VETG+HEEL+ G Y SL+R Q E + D + S R + +
Sbjct: 547 RNVDVICVFKNGQIVETGSHEELMENVDGQYTSLVRLQIMENEESNDNVSVSMREGQFSN 606
Query: 358 LSHSLSTKS-LSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNA 416
+ + S LS++S S + S T G I K+ P F RL+ +N
Sbjct: 607 FNKDVKYSSRLSIQSRSSLFATSSIDTNLAGSIP---------KDKKPS--FKRLMAMNK 655
Query: 417 PEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYA 476
PEW +++ G + +VL G + P +A M+ V++ + M+ KT+ +V +++G +
Sbjct: 656 PEWKHALYGCLSAVLYGALHPIYAYASGSMVSVYFLTSHDEMKEKTRIYVLLFVGLAVLC 715
Query: 477 VVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVK 536
+ +IQ Y F+ MGE LT R+R +L+ +L EV WFDE+E++S + +RLA DA V+
Sbjct: 716 FLISIIQQYSFAYMGEYLTKRIRENILSKLLTFEVSWFDEDENSSGSICSRLAKDANVVR 775
Query: 537 SAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDT 596
S + +R+S+++Q ++++ + + + W++S++++ P++V + Q++ LK +
Sbjct: 776 SLVGERVSLLVQTISAVSVACTLGLAISWKLSIVMIAIQPVVVGCFYTQRIVLKSISKKA 835
Query: 597 AKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQ 656
KA ++S +A E VSNIRT+ AF++Q +IL L PQ + +R+S AGI+ S+
Sbjct: 836 IKAQDESSKLAAEAVSNIRTITAFSSQERILKLLKMVQEGPQRENIRQSWLAGIVLATSR 895
Query: 657 FALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVG 716
+ + AL WYG L+ G T ++F++ V T +A+ ++ ++ +G ++VG
Sbjct: 896 SLMTCTSALNYWYGARLIIDGKITSKAFFELFILFVSTGRVIADAGAMTMDLAKGSDAVG 955
Query: 717 SVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQ 776
SVF+ LDR T I+P+ PD + I+G+I+ +VDFAYP+RPDV++FK+F++ I G+S
Sbjct: 956 SVFAVLDRYTNIEPEKPDGFVPQNIKGQIKFVNVDFAYPTRPDVIIFKNFSIDIDEGKST 1015
Query: 777 ALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAAS 836
A+VG SGSGKS++I LIERFYDP G V IDG+DIR +L+SLR IGLV QEP LFA +
Sbjct: 1016 AIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRQHIGLVSQEPILFAGT 1075
Query: 837 IFDNIAYG--KEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894
I +NI YG + E+E++EAA+AAN H F+ L + Y T G+RGVQLSGGQKQRIAI
Sbjct: 1076 IRENIMYGGASDKIDESEIIEAAKAANAHDFIVTLSDGYDTYCGDRGVQLSGGQKQRIAI 1135
Query: 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVV 954
ARAVLKNP++LLLDEATSALD +SE ++Q+AL RLM GRT+V++AHRLSTI+ D I V+
Sbjct: 1136 ARAVLKNPSVLLLDEATSALDNQSERMVQDALGRLMVGRTSVVIAHRLSTIQNCDTITVL 1195
Query: 955 QDGRIVEQGSHSELVSR-PDGAYSRLLQLQH 984
G++VE G+HS L+++ P G Y L+ LQ
Sbjct: 1196 DKGKVVECGTHSSLLAKGPTGVYFSLVSLQR 1226
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 987 | ||||||
| 255552900 | 1259 | multidrug resistance protein 1, 2, putat | 0.981 | 0.769 | 0.942 | 0.0 | |
| 162280537 | 1249 | LO4 [Solanum pennellii] | 0.975 | 0.771 | 0.918 | 0.0 | |
| 350535719 | 1249 | L04 [Solanum lycopersicum] gi|162280535| | 0.975 | 0.771 | 0.917 | 0.0 | |
| 224140965 | 1251 | multidrug/pheromone exporter, MDR family | 0.981 | 0.774 | 0.934 | 0.0 | |
| 356550795 | 1249 | PREDICTED: ABC transporter B family memb | 0.981 | 0.775 | 0.929 | 0.0 | |
| 356572508 | 1250 | PREDICTED: ABC transporter B family memb | 0.981 | 0.775 | 0.927 | 0.0 | |
| 359488906 | 1250 | PREDICTED: ABC transporter B family memb | 0.979 | 0.773 | 0.932 | 0.0 | |
| 297818508 | 1252 | P-glycoprotein 19 [Arabidopsis lyrata su | 0.975 | 0.769 | 0.899 | 0.0 | |
| 15228506 | 1252 | ABC transporter B family member 19 [Arab | 0.975 | 0.769 | 0.895 | 0.0 | |
| 26449438 | 1252 | putative P-glycoprotein [Arabidopsis tha | 0.975 | 0.769 | 0.894 | 0.0 |
| >gi|255552900|ref|XP_002517493.1| multidrug resistance protein 1, 2, putative [Ricinus communis] gi|223543504|gb|EEF45035.1| multidrug resistance protein 1, 2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1899 bits (4919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 930/987 (94%), Positives = 963/987 (97%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
MAKGLGLGCTYGIACMSWALVFWYAGVFIRNG TDGGKAFTAIFSAIVGGMSLGQSFSNL
Sbjct: 273 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNL 332
Query: 61 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 120
GAFSKGKAAGYKLMEIIKQKP+IIQDP++G+CL E+NGNIEFK+VTFSYPSRPDVIIFRD
Sbjct: 333 GAFSKGKAAGYKLMEIIKQKPTIIQDPSDGKCLPEINGNIEFKDVTFSYPSRPDVIIFRD 392
Query: 121 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN G VLLDNVDIKTLQLRWLRDQIGL
Sbjct: 393 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNQGQVLLDNVDIKTLQLRWLRDQIGL 452
Query: 181 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240
VNQEPALFATTILENILYGKP+ATM EVEAAASAANAHSFITLLPNGY+TQVGERGVQLS
Sbjct: 453 VNQEPALFATTILENILYGKPDATMDEVEAAASAANAHSFITLLPNGYNTQVGERGVQLS 512
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300
GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI
Sbjct: 513 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 572
Query: 301 RNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSH 360
RNVDT+AVIQQGQVVETGTHEELI+K AYASLIRFQEMVRNRDFANPSTRRSRSTRLSH
Sbjct: 573 RNVDTIAVIQQGQVVETGTHEELISKGAAYASLIRFQEMVRNRDFANPSTRRSRSTRLSH 632
Query: 361 SLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWP 420
SLSTKSLSLRSGSLRNLSYSYSTGADGRIEM+SNAET+RKNPAPDGYF RLLKLNAPEWP
Sbjct: 633 SLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNAETERKNPAPDGYFCRLLKLNAPEWP 692
Query: 421 YSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAY 480
YSIMGAIGSVLSGFIGPTFAIVM+ MIEVFYYRNPASMERKTKE+VFIYIGAGLYAVVAY
Sbjct: 693 YSIMGAIGSVLSGFIGPTFAIVMSNMIEVFYYRNPASMERKTKEYVFIYIGAGLYAVVAY 752
Query: 481 LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIA 540
LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIA
Sbjct: 753 LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIA 812
Query: 541 DRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAH 600
+RISVILQNMTSLLTSFIVAFIVEWRVSLLIL T+PLLVLANFAQQLSLKGFAGDTAKAH
Sbjct: 813 ERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAH 872
Query: 601 AKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALH 660
AKTSMIAGEGVSNIRTVAAFNAQ+KILSLFCHEL VPQ ++LRRS T+G+LFG+SQ AL+
Sbjct: 873 AKTSMIAGEGVSNIRTVAAFNAQDKILSLFCHELSVPQLRSLRRSQTSGLLFGLSQLALY 932
Query: 661 ASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFS 720
ASEALILWYG HLV KGVSTFSKVIKVFVVLV+TANSVAETVSLAPEIIRGGE+VGSVFS
Sbjct: 933 ASEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFS 992
Query: 721 TLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVG 780
LDRSTRIDPDDP+AEPVE+IRGEIELRHVDF+YPSRPDV VFKD NLRIRAGQSQALVG
Sbjct: 993 ILDRSTRIDPDDPEAEPVESIRGEIELRHVDFSYPSRPDVPVFKDLNLRIRAGQSQALVG 1052
Query: 781 ASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDN 840
ASG GKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK+GLVQQEPALFAASIFDN
Sbjct: 1053 ASGCGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKVGLVQQEPALFAASIFDN 1112
Query: 841 IAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900
I YGKEGATEAEV+EAARAANVHGFVSALP+ YKTPVGERGVQLSGGQKQRIAIARAVLK
Sbjct: 1113 IVYGKEGATEAEVIEAARAANVHGFVSALPDGYKTPVGERGVQLSGGQKQRIAIARAVLK 1172
Query: 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIV 960
+PAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVD IGVVQDGRIV
Sbjct: 1173 DPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDSIGVVQDGRIV 1232
Query: 961 EQGSHSELVSRPDGAYSRLLQLQHHHI 987
EQGSH+ELVSR DGAYSRLLQLQHHHI
Sbjct: 1233 EQGSHAELVSRGDGAYSRLLQLQHHHI 1259
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|162280537|gb|ABX82929.1| LO4 [Solanum pennellii] | Back alignment and taxonomy information |
|---|
Score = 1868 bits (4839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 907/987 (91%), Positives = 948/987 (96%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
MAKGLGLGCTYGIACMSWALVFWYAGVFIRNG +DGGKAFTAIFSAIVGGMSLGQSFSNL
Sbjct: 263 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQSDGGKAFTAIFSAIVGGMSLGQSFSNL 322
Query: 61 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 120
GAFSKGKAAGYKLMEIIKQKP+I+QD +G+CL EV+GNIEFKNVTFSYPSRPDVIIFRD
Sbjct: 323 GAFSKGKAAGYKLMEIIKQKPTIVQDTLDGKCLSEVSGNIEFKNVTFSYPSRPDVIIFRD 382
Query: 121 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
F IFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN G VLLDNVDIKTLQLRWLRDQIGL
Sbjct: 383 FCIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNDGQVLLDNVDIKTLQLRWLRDQIGL 442
Query: 181 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240
VNQEPALFATTILENILYGKP+ATMAEVEAA A+NAHSFITLLPNGY+TQVGERGVQLS
Sbjct: 443 VNQEPALFATTILENILYGKPDATMAEVEAATCASNAHSFITLLPNGYNTQVGERGVQLS 502
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300
GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI
Sbjct: 503 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 562
Query: 301 RNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSH 360
RNVD++AVIQQGQVVETGTHEELI+KAGAYASLIRFQEMV NRDF+NPSTRR+RSTRLSH
Sbjct: 563 RNVDSIAVIQQGQVVETGTHEELISKAGAYASLIRFQEMVGNRDFSNPSTRRTRSTRLSH 622
Query: 361 SLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWP 420
SLSTKSLSLRSGSLRNLSYSYSTGADGRIEM+SNAETDRKNPAP YF RLLKLNAPEWP
Sbjct: 623 SLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNAETDRKNPAPQNYFCRLLKLNAPEWP 682
Query: 421 YSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAY 480
YSIMGA+GSVLSGFIGPTFAIVM+ MIEVFYY NPA+MERKTKE+VFIYIGAGLYAVVAY
Sbjct: 683 YSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYYTNPATMERKTKEYVFIYIGAGLYAVVAY 742
Query: 481 LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIA 540
LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEE+NSSL+AARLATDAADVKSAIA
Sbjct: 743 LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEENNSSLLAARLATDAADVKSAIA 802
Query: 541 DRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAH 600
+RISVILQNMTSLLTSFIVAFIVEWRVSLLIL T+PLLVLANFAQQLSLKGFAGDTAKAH
Sbjct: 803 ERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAH 862
Query: 601 AKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALH 660
AKTSMIAGEGVSNIRTVAAFNAQ KI+SLF ELRVPQ Q+LRRS +G+LFGISQ AL+
Sbjct: 863 AKTSMIAGEGVSNIRTVAAFNAQEKIISLFSQELRVPQMQSLRRSQMSGLLFGISQLALY 922
Query: 661 ASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFS 720
SEALILWYG HLV GVSTFSKVIKVFVVLV+TANSVAETVSLAPEIIRGGE+VGSVFS
Sbjct: 923 GSEALILWYGAHLVNNGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFS 982
Query: 721 TLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVG 780
LDRSTR+DPDDP+ +PVE+IRG+IELRHVDFAYPSRPDV VFKD NLRIRAGQSQALVG
Sbjct: 983 ILDRSTRVDPDDPEGDPVESIRGDIELRHVDFAYPSRPDVSVFKDLNLRIRAGQSQALVG 1042
Query: 781 ASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDN 840
ASGSGKSSVIALIERFYDPT GKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIF+N
Sbjct: 1043 ASGSGKSSVIALIERFYDPTGGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFEN 1102
Query: 841 IAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900
IAYGKEGATEAEV+EAARAANVH FVS LP YKTPVGERGVQLSGGQKQRIAIARAVLK
Sbjct: 1103 IAYGKEGATEAEVIEAARAANVHTFVSGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLK 1162
Query: 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIV 960
+P+ILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR VD IGVVQDGRIV
Sbjct: 1163 DPSILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRNVDTIGVVQDGRIV 1222
Query: 961 EQGSHSELVSRPDGAYSRLLQLQHHHI 987
EQGSHSEL+SRP+GAYSRLLQLQHH I
Sbjct: 1223 EQGSHSELISRPEGAYSRLLQLQHHRI 1249
|
Source: Solanum pennellii Species: Solanum pennellii Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350535719|ref|NP_001234209.1| L04 [Solanum lycopersicum] gi|162280535|gb|ABX82928.1| L04 [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 1867 bits (4836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 906/987 (91%), Positives = 948/987 (96%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
MAKGLGLGCTYGIACMSWALVFWYAGVFIRNG +DGGKAFTAIFSAIVGGMSLGQSFSNL
Sbjct: 263 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQSDGGKAFTAIFSAIVGGMSLGQSFSNL 322
Query: 61 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 120
GAFSKGKAAGYKLMEIIKQKP+I+QD +G+CL EV+GNIEFKNVTFSYPSRPDVIIFRD
Sbjct: 323 GAFSKGKAAGYKLMEIIKQKPTIVQDTLDGKCLSEVSGNIEFKNVTFSYPSRPDVIIFRD 382
Query: 121 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
F IFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN G VLLDNVDIKTLQLRWLRDQIGL
Sbjct: 383 FCIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNDGQVLLDNVDIKTLQLRWLRDQIGL 442
Query: 181 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240
VNQEPALFATTILENILYGKP+ATMAEVEAA A+NAH+FITLLPNGY+TQVGERGVQLS
Sbjct: 443 VNQEPALFATTILENILYGKPDATMAEVEAATCASNAHNFITLLPNGYNTQVGERGVQLS 502
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300
GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI
Sbjct: 503 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 562
Query: 301 RNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSH 360
RNVD++AVIQQGQVVETGTHEELI+KAGAYASLIRFQEMV NRDF+NPSTRR+RSTRLSH
Sbjct: 563 RNVDSIAVIQQGQVVETGTHEELISKAGAYASLIRFQEMVGNRDFSNPSTRRTRSTRLSH 622
Query: 361 SLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWP 420
SLSTKSLSLRSGSLRNLSYSYSTGADGRIEM+SNAETDRKNPAP YF RLLKLNAPEWP
Sbjct: 623 SLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNAETDRKNPAPQNYFCRLLKLNAPEWP 682
Query: 421 YSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAY 480
YSIMGA+GSVLSGFIGPTFAIVM+ MIEVFYY NPA+MERKTKE+VFIYIGAGLYAVVAY
Sbjct: 683 YSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYYTNPATMERKTKEYVFIYIGAGLYAVVAY 742
Query: 481 LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIA 540
LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEE+NSSL+AARLATDAADVKSAIA
Sbjct: 743 LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEENNSSLLAARLATDAADVKSAIA 802
Query: 541 DRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAH 600
+RISVILQNMTSLLTSFIVAFIVEWRVSLLIL T+PLLVLANFAQQLSLKGFAGDTAKAH
Sbjct: 803 ERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAH 862
Query: 601 AKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALH 660
AKTSMIAGEGVSNIRTVAAFNAQ KI+SLF ELRVPQ Q+LRRS +G+LFGISQ AL+
Sbjct: 863 AKTSMIAGEGVSNIRTVAAFNAQEKIISLFSQELRVPQMQSLRRSQMSGLLFGISQLALY 922
Query: 661 ASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFS 720
SEALILWYG HLV GVSTFSKVIKVFVVLV+TANSVAETVSLAPEIIRGGE+VGSVFS
Sbjct: 923 GSEALILWYGAHLVNNGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFS 982
Query: 721 TLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVG 780
LDRSTR+DPDDP+ +PVE+IRG+IELRHVDFAYPSRPDV VFKD NLRIRAGQSQALVG
Sbjct: 983 ILDRSTRVDPDDPEGDPVESIRGDIELRHVDFAYPSRPDVSVFKDLNLRIRAGQSQALVG 1042
Query: 781 ASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDN 840
ASGSGKSSVIALIERFYDPT GKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIF+N
Sbjct: 1043 ASGSGKSSVIALIERFYDPTGGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFEN 1102
Query: 841 IAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900
IAYGKEGATEAEV+EAARAANVH FVS LP YKTPVGERGVQLSGGQKQRIAIARAVLK
Sbjct: 1103 IAYGKEGATEAEVIEAARAANVHTFVSGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLK 1162
Query: 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIV 960
+P+ILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR VD IGVVQDGRIV
Sbjct: 1163 DPSILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRNVDTIGVVQDGRIV 1222
Query: 961 EQGSHSELVSRPDGAYSRLLQLQHHHI 987
EQGSHSEL+SRP+GAYSRLLQLQHH I
Sbjct: 1223 EQGSHSELISRPEGAYSRLLQLQHHRI 1249
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140965|ref|XP_002323847.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222866849|gb|EEF03980.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1860 bits (4819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 922/987 (93%), Positives = 955/987 (96%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
MAKGLGLGCTYGIACMSWALVFWYAGVFIRNG TDGGKAFTAIFSAIVGGMSLGQSFSNL
Sbjct: 265 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNL 324
Query: 61 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 120
GAFSKGKAAGYKLMEIIKQ+PSI QD +G+CL EVNGNIEFK+VTFSYPSRPDVIIFRD
Sbjct: 325 GAFSKGKAAGYKLMEIIKQRPSITQDAVDGKCLAEVNGNIEFKSVTFSYPSRPDVIIFRD 384
Query: 121 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN G VLLDNVDIKTLQLRWLRDQIGL
Sbjct: 385 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNQGQVLLDNVDIKTLQLRWLRDQIGL 444
Query: 181 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240
VNQEPALFATTILENI YGKP+ATM EVEAA SAANAHSFITLLPNGY+TQVGERGVQLS
Sbjct: 445 VNQEPALFATTILENIRYGKPDATMDEVEAATSAANAHSFITLLPNGYNTQVGERGVQLS 504
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300
GGQKQRIAIARAMLKNPKILLLDEATSALDA SESIVQEALDRLM+GRTTVVVAHRLSTI
Sbjct: 505 GGQKQRIAIARAMLKNPKILLLDEATSALDASSESIVQEALDRLMIGRTTVVVAHRLSTI 564
Query: 301 RNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSH 360
RNVDT+AVIQQG VVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRS+RLSH
Sbjct: 565 RNVDTIAVIQQGLVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSSRLSH 624
Query: 361 SLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWP 420
SLSTKSLSLRSGSLRNLSYSYSTGADGRIEM+SNAETDRKNPAPDGYF RLLKLNAPEWP
Sbjct: 625 SLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNAETDRKNPAPDGYFCRLLKLNAPEWP 684
Query: 421 YSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAY 480
YSIMGA+GSVLSGFIGPTFAIVM+ MIEVFYYRNPASMERKTKE+VFIYIGAGLYAVVAY
Sbjct: 685 YSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYYRNPASMERKTKEYVFIYIGAGLYAVVAY 744
Query: 481 LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIA 540
LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIA
Sbjct: 745 LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIA 804
Query: 541 DRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAH 600
+RISVILQNMTSLLTSFIVAFIVEWRVSLLIL T+PLLVLANFAQQLSLKGFAGDTAKAH
Sbjct: 805 ERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAH 864
Query: 601 AKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALH 660
AKTSMIAGEGVSNIRTVAAFNAQ K+LSLFCHELRVPQ +LRRS T+G+LFG+SQ AL+
Sbjct: 865 AKTSMIAGEGVSNIRTVAAFNAQGKVLSLFCHELRVPQLHSLRRSQTSGLLFGLSQLALY 924
Query: 661 ASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFS 720
SEALILWYG HLV KGVSTFSKVIKVFVVLV+TANSVAETVSLAPEIIRGGE+VGSVFS
Sbjct: 925 GSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFS 984
Query: 721 TLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVG 780
L+RST+IDPDD +AEPVE++RGEIELRHVDFAYPSRPDV VFKD NLRIRAGQSQALVG
Sbjct: 985 ILERSTKIDPDDSEAEPVESLRGEIELRHVDFAYPSRPDVPVFKDLNLRIRAGQSQALVG 1044
Query: 781 ASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDN 840
ASG GKSSVI+LIERFYDP AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDN
Sbjct: 1045 ASGCGKSSVISLIERFYDPMAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDN 1104
Query: 841 IAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900
IAYGK+GATEAEV+EAARAANVHGFVSALP+ YKTPVGERGVQLSGGQKQRIAIARAVLK
Sbjct: 1105 IAYGKDGATEAEVIEAARAANVHGFVSALPDGYKTPVGERGVQLSGGQKQRIAIARAVLK 1164
Query: 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIV 960
+PAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVD IGVVQDGRIV
Sbjct: 1165 DPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDSIGVVQDGRIV 1224
Query: 961 EQGSHSELVSRPDGAYSRLLQLQHHHI 987
EQGSHSELVSRPDGAY RLLQLQHHHI
Sbjct: 1225 EQGSHSELVSRPDGAYFRLLQLQHHHI 1251
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550795|ref|XP_003543769.1| PREDICTED: ABC transporter B family member 19-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1855 bits (4804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 917/987 (92%), Positives = 959/987 (97%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
MAKGLGLGCTYGIACMSWALVFWYAGVFIRNG TDGGKAFTAIFSAIVGGMSLGQSFSNL
Sbjct: 263 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNL 322
Query: 61 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 120
GAFSKGKAAGYKLMEII QKP+I++DP+ G+CL EVNGNIEFK+VTFSYPSRPD+ IFR+
Sbjct: 323 GAFSKGKAAGYKLMEIINQKPTIVEDPSEGKCLAEVNGNIEFKDVTFSYPSRPDMFIFRN 382
Query: 121 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN G VLLDNVDIKTLQL+WLRDQIGL
Sbjct: 383 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNEGQVLLDNVDIKTLQLKWLRDQIGL 442
Query: 181 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240
VNQEPALFATTILENILYGKP+ATMAEVEAA SAANAHSFITLLPNGY+TQVGERGVQLS
Sbjct: 443 VNQEPALFATTILENILYGKPDATMAEVEAATSAANAHSFITLLPNGYNTQVGERGVQLS 502
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300
GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI
Sbjct: 503 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 562
Query: 301 RNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSH 360
RNVDT+AVIQQGQVVETGTHEELIAKAG YASLIRFQEMV NRDF+NPSTRR+RS+RLSH
Sbjct: 563 RNVDTIAVIQQGQVVETGTHEELIAKAGTYASLIRFQEMVGNRDFSNPSTRRTRSSRLSH 622
Query: 361 SLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWP 420
SLSTKSLSLRSGSLRNLSY YSTGADGRIEM+SNAETD+KNPAPDGYF RLLK+NAPEWP
Sbjct: 623 SLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETDKKNPAPDGYFFRLLKMNAPEWP 682
Query: 421 YSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAY 480
YSIMGA+GSVLSGFIGPTFAIVM+ MIEVFY+RN ASMERKTKE+VFIYIGAGLYAV AY
Sbjct: 683 YSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYFRNYASMERKTKEYVFIYIGAGLYAVGAY 742
Query: 481 LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIA 540
LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIA
Sbjct: 743 LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIA 802
Query: 541 DRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAH 600
+RISVILQNMTSLLTSFIVAFIVEWRVSLLIL T+PLLVLANFAQQLSLKGFAGDTAKAH
Sbjct: 803 ERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAH 862
Query: 601 AKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALH 660
AKTSMIAGEGVSNIRTVAAFNAQNK+LS+FCHELRVPQSQ+LRRS T+G LFG+SQ AL+
Sbjct: 863 AKTSMIAGEGVSNIRTVAAFNAQNKMLSVFCHELRVPQSQSLRRSQTSGFLFGLSQLALY 922
Query: 661 ASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFS 720
ASEALILWYG HLV KGVSTFSKVIKVFVVLV+TANSVAETVSLAPEIIRGGE+VGSVFS
Sbjct: 923 ASEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFS 982
Query: 721 TLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVG 780
LDRSTRIDPDDPDA+PVE++RGEIELRHVDFAYPSRPDV+VFKD NLRIRAGQSQALVG
Sbjct: 983 ILDRSTRIDPDDPDADPVESLRGEIELRHVDFAYPSRPDVMVFKDLNLRIRAGQSQALVG 1042
Query: 781 ASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDN 840
ASGSGKSSVIALIERFYDP AGKVM+DGKDIR+LNLKSLRLKIGLVQQEPALFAASIF+N
Sbjct: 1043 ASGSGKSSVIALIERFYDPIAGKVMVDGKDIRKLNLKSLRLKIGLVQQEPALFAASIFEN 1102
Query: 841 IAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900
IAYGKEGATEAEV+EAARAANVHGFVS LP YKTPVGERGVQLSGGQKQRIAIARAVLK
Sbjct: 1103 IAYGKEGATEAEVIEAARAANVHGFVSGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLK 1162
Query: 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIV 960
+P ILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIV
Sbjct: 1163 DPTILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIV 1222
Query: 961 EQGSHSELVSRPDGAYSRLLQLQHHHI 987
EQGSHSELVSRP+GAYSRLLQLQHHHI
Sbjct: 1223 EQGSHSELVSRPEGAYSRLLQLQHHHI 1249
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572508|ref|XP_003554410.1| PREDICTED: ABC transporter B family member 19-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1848 bits (4788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 915/987 (92%), Positives = 958/987 (97%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
MAKGLGLGCTYGIACMSWALVFWYAGVFIRNG TDGGKAFTAIFSAIVGGMSLGQSFSNL
Sbjct: 264 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNL 323
Query: 61 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 120
GAFSKGKAAGYKLMEII QKP+I++DP+ G+CL EVNGNIEFK+VTFSYPSRPD+ IFR+
Sbjct: 324 GAFSKGKAAGYKLMEIINQKPTIVEDPSEGKCLAEVNGNIEFKDVTFSYPSRPDMFIFRN 383
Query: 121 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN G VLLDNVDIKTLQL+WLRDQIGL
Sbjct: 384 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNEGQVLLDNVDIKTLQLKWLRDQIGL 443
Query: 181 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240
VNQEPALFATTILENILYGKP+ATMAEVEAA SAANAHSFITLLPNGY+TQVGERGVQLS
Sbjct: 444 VNQEPALFATTILENILYGKPDATMAEVEAATSAANAHSFITLLPNGYNTQVGERGVQLS 503
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300
GGQKQRIAIARAMLKNPKILLLDEATSALDAGSE+IVQEALDRLMVGRTTVVVAHRLSTI
Sbjct: 504 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSENIVQEALDRLMVGRTTVVVAHRLSTI 563
Query: 301 RNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSH 360
RNVDT+AVIQQGQVVETG HEELIAKAG YASLIRFQEMV NRDF+NPSTRR+RS+RLSH
Sbjct: 564 RNVDTIAVIQQGQVVETGAHEELIAKAGTYASLIRFQEMVGNRDFSNPSTRRTRSSRLSH 623
Query: 361 SLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWP 420
SLSTKSLSLRSGSLRNLSY YSTGADGRIEM+SNAETD+KNPAPDGYF RLLK+NAPEWP
Sbjct: 624 SLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETDKKNPAPDGYFFRLLKMNAPEWP 683
Query: 421 YSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAY 480
YSIMGA+GSVLSGFIGPTFAIVM+ MIEVFY+ N ASMERKTKE+VFIYIGAGLYAV AY
Sbjct: 684 YSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYFSNYASMERKTKEYVFIYIGAGLYAVGAY 743
Query: 481 LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIA 540
LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIA
Sbjct: 744 LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIA 803
Query: 541 DRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAH 600
+RISVILQNMTSLLTSFIVAFIVEWRVSLLIL T+PLLVLANFAQQLSLKGFAGDTAKAH
Sbjct: 804 ERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAH 863
Query: 601 AKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALH 660
AKTSMIAGEGVSNIRTVAAFNAQNK+LS+FCHELRVPQSQ+LRRSLT+G LFG+SQ AL+
Sbjct: 864 AKTSMIAGEGVSNIRTVAAFNAQNKMLSVFCHELRVPQSQSLRRSLTSGFLFGLSQLALY 923
Query: 661 ASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFS 720
ASEALILWYG HLV KGVSTFSKVIKVFVVLV+TANSVAETVSLAPEIIRGGE+VGSVFS
Sbjct: 924 ASEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFS 983
Query: 721 TLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVG 780
LDRSTRIDPDDPDA+PVE++RGEIELRHVDFAYPSRPDV+VFKDFNLRIRAGQSQALVG
Sbjct: 984 ILDRSTRIDPDDPDADPVESLRGEIELRHVDFAYPSRPDVMVFKDFNLRIRAGQSQALVG 1043
Query: 781 ASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDN 840
ASGSGKSSVIALIERFYDP AGKVM+DGKDIR+LNLKSLRLKIGLVQQEPALFAASIF+N
Sbjct: 1044 ASGSGKSSVIALIERFYDPIAGKVMVDGKDIRKLNLKSLRLKIGLVQQEPALFAASIFEN 1103
Query: 841 IAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900
IAYGKEGATEAEV+EAARAANVHGFVS LP YKTPVGERGVQLSGGQKQRIAIARAVLK
Sbjct: 1104 IAYGKEGATEAEVIEAARAANVHGFVSGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLK 1163
Query: 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIV 960
+P ILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIV
Sbjct: 1164 DPTILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIV 1223
Query: 961 EQGSHSELVSRPDGAYSRLLQLQHHHI 987
EQGSHSELVSR +GAYSRLLQLQHHHI
Sbjct: 1224 EQGSHSELVSRHEGAYSRLLQLQHHHI 1250
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488906|ref|XP_002283051.2| PREDICTED: ABC transporter B family member 19-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1837 bits (4758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 920/987 (93%), Positives = 958/987 (97%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
MAKGLGLGCTYGIACMSWALVFWYAGVFIRNG TDGGKAFTAIFSAIVGGMSLGQSFSNL
Sbjct: 264 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNL 323
Query: 61 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 120
GAFSKGKAAGYKLMEII+QKPSI+QDP++G+CL EVNGNIEFK+VTFSYPSRPDVIIFRD
Sbjct: 324 GAFSKGKAAGYKLMEIIRQKPSIVQDPSDGKCLAEVNGNIEFKDVTFSYPSRPDVIIFRD 383
Query: 121 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN G VLLDNVDIKTLQLRWLRDQIGL
Sbjct: 384 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNQGQVLLDNVDIKTLQLRWLRDQIGL 443
Query: 181 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240
VNQEPALFATTILENILYGKP+AT AEVEAAASAANAHSFITLLPNGY+TQVGERG QLS
Sbjct: 444 VNQEPALFATTILENILYGKPDATAAEVEAAASAANAHSFITLLPNGYNTQVGERGTQLS 503
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300
GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI
Sbjct: 504 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 563
Query: 301 RNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSH 360
RNVDT+AVIQQGQVVETGTHEEL AKAGAYASLIRFQEMVRNRDFANPSTRRSRS+RLSH
Sbjct: 564 RNVDTIAVIQQGQVVETGTHEELSAKAGAYASLIRFQEMVRNRDFANPSTRRSRSSRLSH 623
Query: 361 SLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWP 420
SLSTKSLSLRSGSLRNLSY YSTGADGRIEMVSNAETD+KNPAPDGYF RLL LNAPEWP
Sbjct: 624 SLSTKSLSLRSGSLRNLSYQYSTGADGRIEMVSNAETDKKNPAPDGYFYRLLNLNAPEWP 683
Query: 421 YSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAY 480
YSIMGA+GSVLSGFIGPTFAIVM+ MIEVFYYRNPASMERKTKE+VFIYIGAGLYAV+AY
Sbjct: 684 YSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYYRNPASMERKTKEYVFIYIGAGLYAVIAY 743
Query: 481 LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIA 540
LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEE+NSSL+AARLATDAADVKSAIA
Sbjct: 744 LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEENNSSLLAARLATDAADVKSAIA 803
Query: 541 DRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAH 600
+RISVILQNMTSLLTSFIVAFIVEWRVSLLIL T+PLLVLANFAQQLSLKGFAGDTAKAH
Sbjct: 804 ERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAH 863
Query: 601 AKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALH 660
AKTSMIAGEGVSNIRTVAAFNAQ KILSLFC+ELRVPQ Q+LRRS T+G+LFG+SQ AL+
Sbjct: 864 AKTSMIAGEGVSNIRTVAAFNAQEKILSLFCYELRVPQMQSLRRSQTSGLLFGLSQLALY 923
Query: 661 ASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFS 720
ASEALILWYG HLV KG STFSKVIKVFVVLV+TANSVAETVSLAPEIIRGGE+VGSVFS
Sbjct: 924 ASEALILWYGSHLVSKGASTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFS 983
Query: 721 TLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVG 780
LDRST+IDPDD DAEPVE+IRGEIELRHVDF+YPSR D+ VFKD NLRIRAGQSQALVG
Sbjct: 984 ILDRSTKIDPDDSDAEPVESIRGEIELRHVDFSYPSRSDITVFKDLNLRIRAGQSQALVG 1043
Query: 781 ASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDN 840
ASGSGKSSVIALIERFYDPTAGKVMIDGKD+RRLNLKSLRLKIGLVQQEPALFAASI DN
Sbjct: 1044 ASGSGKSSVIALIERFYDPTAGKVMIDGKDVRRLNLKSLRLKIGLVQQEPALFAASILDN 1103
Query: 841 IAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900
IAYGK+GATEAEV+EAARAANVHGFVS LP+ YKTPVGERGVQLSGGQKQRIAIARAVLK
Sbjct: 1104 IAYGKDGATEAEVIEAARAANVHGFVSGLPDGYKTPVGERGVQLSGGQKQRIAIARAVLK 1163
Query: 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIV 960
+P ILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVD IGVVQDGRIV
Sbjct: 1164 DPTILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDSIGVVQDGRIV 1223
Query: 961 EQGSHSELVSRPDGAYSRLLQLQHHHI 987
EQGSHSEL+SRP+GAYSRLLQLQHHHI
Sbjct: 1224 EQGSHSELISRPEGAYSRLLQLQHHHI 1250
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297818508|ref|XP_002877137.1| P-glycoprotein 19 [Arabidopsis lyrata subsp. lyrata] gi|297322975|gb|EFH53396.1| P-glycoprotein 19 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1804 bits (4672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 888/987 (89%), Positives = 945/987 (95%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
MAKGLGLGCTYGIACMSWALVFWYAGVFIRNG TDGGKAFTAIFSAIVGGMSLGQSFSNL
Sbjct: 266 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNL 325
Query: 61 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 120
GAFSKGKAAGYKLMEII QKP+IIQDP +G+CLD+V+GNIEFK+VTFSYPSRPDV+IFR+
Sbjct: 326 GAFSKGKAAGYKLMEIINQKPTIIQDPLDGKCLDQVHGNIEFKDVTFSYPSRPDVMIFRN 385
Query: 121 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
F+IFFP+GKTVAVVGGSGSGKSTVVSLIERFYDPN+G +LLD V+IKTLQL++LR+QIGL
Sbjct: 386 FNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQLKFLREQIGL 445
Query: 181 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240
VNQEPALFATTILENILYGKP+ATM EVEAAASAANAHSFITLLP GY TQVGERGVQLS
Sbjct: 446 VNQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQVGERGVQLS 505
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300
GGQKQRIAIARAMLK+PKILLLDEATSALDA SESIVQEALDR+MVGRTTVVVAHRL TI
Sbjct: 506 GGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTVVVAHRLCTI 565
Query: 301 RNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSH 360
RNVD++AVIQQGQVVETGTHEELIAK+GAYASLIRFQEMV RDF+NPSTRR+RSTRLSH
Sbjct: 566 RNVDSIAVIQQGQVVETGTHEELIAKSGAYASLIRFQEMVGTRDFSNPSTRRTRSTRLSH 625
Query: 361 SLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWP 420
SLSTKSLSLRSGSLRNLSYSYSTGADGRIEM+SNAETDRK AP+ YF RLLKLN+PEWP
Sbjct: 626 SLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNAETDRKTRAPENYFYRLLKLNSPEWP 685
Query: 421 YSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAY 480
YSIMGAIGS+LSGFIGPTFAIVM+ MIEVFYY + SMERKTKE+VFIYIGAGLYAV AY
Sbjct: 686 YSIMGAIGSILSGFIGPTFAIVMSNMIEVFYYTDYNSMERKTKEYVFIYIGAGLYAVGAY 745
Query: 481 LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIA 540
LIQHYFFSIMGENLTTRVRRMML+AILRNEVGWFDE+EHNSSL+AARLATDAADVKSAIA
Sbjct: 746 LIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWFDEDEHNSSLIAARLATDAADVKSAIA 805
Query: 541 DRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAH 600
+RISVILQNMTSLLTSFIVAFIVEWRVSLLILGT+PLLVLANFAQQLSLKGFAGDTAKAH
Sbjct: 806 ERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTFPLLVLANFAQQLSLKGFAGDTAKAH 865
Query: 601 AKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALH 660
AKTSMIAGEGVSNIRTVAAFNAQ+KILSLFCHELRVPQ ++L RS T+G LFG+SQ AL+
Sbjct: 866 AKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHELRVPQKRSLYRSQTSGFLFGLSQLALY 925
Query: 661 ASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFS 720
SEALILWYG HLV KGVSTFSKVIKVFVVLV+TANSVAETVSLAPEIIRGGE+VGSVFS
Sbjct: 926 GSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFS 985
Query: 721 TLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVG 780
LDR TRIDPDD DA+PVETIRG+IE RHVDFAYPSRPDV+VF+DFNLRIRAG SQALVG
Sbjct: 986 VLDRQTRIDPDDADADPVETIRGDIEFRHVDFAYPSRPDVMVFRDFNLRIRAGHSQALVG 1045
Query: 781 ASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDN 840
ASGSGKSSVIA+IERFYDP AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA+IFDN
Sbjct: 1046 ASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAATIFDN 1105
Query: 841 IAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900
IAYGK+GATE+EV+EAARAAN HGF+S LP YKTPVGERGVQLSGGQKQRIAIARAVLK
Sbjct: 1106 IAYGKDGATESEVIEAARAANAHGFISGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLK 1165
Query: 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIV 960
NP +LLLDEATSALDAESECVLQEALERLMRGRTTV+VAHRLSTIRGVDCIGV+QDGRIV
Sbjct: 1166 NPTVLLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRGVDCIGVIQDGRIV 1225
Query: 961 EQGSHSELVSRPDGAYSRLLQLQHHHI 987
EQGSHSELVSRPDGAYSRLLQLQ H I
Sbjct: 1226 EQGSHSELVSRPDGAYSRLLQLQTHRI 1252
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15228506|ref|NP_189528.1| ABC transporter B family member 19 [Arabidopsis thaliana] gi|75335092|sp|Q9LJX0.1|AB19B_ARATH RecName: Full=ABC transporter B family member 19; Short=ABC transporter ABCB.19; Short=AtABCB19; AltName: Full=Multidrug resistance protein 11; AltName: Full=P-glycoprotein 19 gi|9294227|dbj|BAB02129.1| P-glycoprotein; multi-drug resistance related; ABC transporter-like protein [Arabidopsis thaliana] gi|332643977|gb|AEE77498.1| ABC transporter B family member 19 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1800 bits (4661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 884/987 (89%), Positives = 945/987 (95%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
MAKGLGLGCTYGIACMSWALVFWYAGVFIRNG TDGGKAFTAIFSAIVGGMSLGQSFSNL
Sbjct: 266 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNL 325
Query: 61 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 120
GAFSKGKAAGYKLMEII Q+P+IIQDP +G+CLD+V+GNIEFK+VTFSYPSRPDV+IFR+
Sbjct: 326 GAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQVHGNIEFKDVTFSYPSRPDVMIFRN 385
Query: 121 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
F+IFFP+GKTVAVVGGSGSGKSTVVSLIERFYDPN+G +LLD V+IKTLQL++LR+QIGL
Sbjct: 386 FNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQLKFLREQIGL 445
Query: 181 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240
VNQEPALFATTILENILYGKP+ATM EVEAAASAANAHSFITLLP GY TQVGERGVQLS
Sbjct: 446 VNQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQVGERGVQLS 505
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300
GGQKQRIAIARAMLK+PKILLLDEATSALDA SESIVQEALDR+MVGRTTVVVAHRL TI
Sbjct: 506 GGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTVVVAHRLCTI 565
Query: 301 RNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSH 360
RNVD++AVIQQGQVVETGTHEELIAK+GAYASLIRFQEMV RDF+NPSTRR+RSTRLSH
Sbjct: 566 RNVDSIAVIQQGQVVETGTHEELIAKSGAYASLIRFQEMVGTRDFSNPSTRRTRSTRLSH 625
Query: 361 SLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWP 420
SLSTKSLSLRSGSLRNLSYSYSTGADGRIEM+SNAETDRK AP+ YF RLLKLN+PEWP
Sbjct: 626 SLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNAETDRKTRAPENYFYRLLKLNSPEWP 685
Query: 421 YSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAY 480
YSIMGA+GS+LSGFIGPTFAIVM+ MIEVFYY + SMERKTKE+VFIYIGAGLYAV AY
Sbjct: 686 YSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDYDSMERKTKEYVFIYIGAGLYAVGAY 745
Query: 481 LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIA 540
LIQHYFFSIMGENLTTRVRRMML+AILRNEVGWFDE+EHNSSL+AARLATDAADVKSAIA
Sbjct: 746 LIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWFDEDEHNSSLIAARLATDAADVKSAIA 805
Query: 541 DRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAH 600
+RISVILQNMTSLLTSFIVAFIVEWRVSLLILGT+PLLVLANFAQQLSLKGFAGDTAKAH
Sbjct: 806 ERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTFPLLVLANFAQQLSLKGFAGDTAKAH 865
Query: 601 AKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALH 660
AKTSMIAGEGVSNIRTVAAFNAQ+KILSLFCHELRVPQ ++L RS T+G LFG+SQ AL+
Sbjct: 866 AKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHELRVPQKRSLYRSQTSGFLFGLSQLALY 925
Query: 661 ASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFS 720
SEALILWYG HLV KGVSTFSKVIKVFVVLV+TANSVAETVSLAPEIIRGGE+VGSVFS
Sbjct: 926 GSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFS 985
Query: 721 TLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVG 780
LDR TRIDPDD DA+PVETIRG+IE RHVDFAYPSRPDV+VF+DFNLRIRAG SQALVG
Sbjct: 986 VLDRQTRIDPDDADADPVETIRGDIEFRHVDFAYPSRPDVMVFRDFNLRIRAGHSQALVG 1045
Query: 781 ASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDN 840
ASGSGKSSVIA+IERFYDP AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA+IFDN
Sbjct: 1046 ASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAATIFDN 1105
Query: 841 IAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900
IAYGK+GATE+EV++AARAAN HGF+S LP YKTPVGERGVQLSGGQKQRIAIARAVLK
Sbjct: 1106 IAYGKDGATESEVIDAARAANAHGFISGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLK 1165
Query: 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIV 960
NP +LLLDEATSALDAESECVLQEALERLMRGRTTV+VAHRLSTIRGVDCIGV+QDGRIV
Sbjct: 1166 NPTVLLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRGVDCIGVIQDGRIV 1225
Query: 961 EQGSHSELVSRPDGAYSRLLQLQHHHI 987
EQGSHSELVSRP+GAYSRLLQLQ H I
Sbjct: 1226 EQGSHSELVSRPEGAYSRLLQLQTHRI 1252
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|26449438|dbj|BAC41846.1| putative P-glycoprotein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1796 bits (4652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 883/987 (89%), Positives = 944/987 (95%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
MAKGLGLGCTYGIACMSWALVFWYAGVFIRNG TDGGKAFTAIFSAIVGGMSLGQSFSNL
Sbjct: 266 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNL 325
Query: 61 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 120
GAFSKGKAAGYKLMEII Q+P+IIQDP +G+CLD+V+GNIEFK+VTFSYPSRPDV+IFR+
Sbjct: 326 GAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQVHGNIEFKDVTFSYPSRPDVMIFRN 385
Query: 121 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
F+IFFP+GKTVAVVGGSGSGKSTVVSLIERFYDPN+G +LLD V+IKTLQL++LR+QIGL
Sbjct: 386 FNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQLKFLREQIGL 445
Query: 181 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240
VNQEPALFATTILENILYGKP+ATM EVEAAASAANAHSFITLLP GY TQVGERGVQLS
Sbjct: 446 VNQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQVGERGVQLS 505
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300
GGQKQRIAIARAMLK+PKILLLDEATSALDA SESIVQEALDR+MVGRTTVVVAHRL TI
Sbjct: 506 GGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTVVVAHRLCTI 565
Query: 301 RNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSH 360
RNVD++AVIQQGQVVETGTHEELIAK+GAYASLIRFQEMV RDF+NPSTRR+RSTRLSH
Sbjct: 566 RNVDSIAVIQQGQVVETGTHEELIAKSGAYASLIRFQEMVGTRDFSNPSTRRTRSTRLSH 625
Query: 361 SLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWP 420
SLSTKSLSLRSGSLRNLSYSYSTGADGRIEM+SNAETDRK AP+ YF RLLKLN+PEWP
Sbjct: 626 SLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNAETDRKTRAPENYFYRLLKLNSPEWP 685
Query: 421 YSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAY 480
YSIMGA+GS+LSGFIGPTFAIVM+ MIEVFYY + SMERKTKE+VFIYIGAGLYAV AY
Sbjct: 686 YSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDYDSMERKTKEYVFIYIGAGLYAVGAY 745
Query: 481 LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIA 540
LIQHYFFSIMGENLTTRVRRMML+AILRNEVGWFDE+EHNSSL+AARLATDAADVKSAIA
Sbjct: 746 LIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWFDEDEHNSSLIAARLATDAADVKSAIA 805
Query: 541 DRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAH 600
+RISVILQNMTSLLTSFIVAFIVEWRVSLLILGT+PLLVLANFAQQLSLKGFAGDTAKAH
Sbjct: 806 ERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTFPLLVLANFAQQLSLKGFAGDTAKAH 865
Query: 601 AKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALH 660
AKTSMIAGEGVSNIRTVAAFNAQ+KILSLFCHELRVPQ ++L RS T+G LFG+SQ AL+
Sbjct: 866 AKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHELRVPQKRSLYRSQTSGFLFGLSQLALY 925
Query: 661 ASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFS 720
SEALILWYG HLV KGVSTFSKVIKVFVVLV+TANSVAETVSLAPEIIRGGE+VGSVFS
Sbjct: 926 GSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFS 985
Query: 721 TLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVG 780
LDR TRIDPDD DA+PVETIRG+IE RHVDFAYPSRPDV+VF+DFNLRIRAG SQALVG
Sbjct: 986 VLDRQTRIDPDDADADPVETIRGDIEFRHVDFAYPSRPDVMVFRDFNLRIRAGHSQALVG 1045
Query: 781 ASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDN 840
ASGSGKSSVIA+IERFYDP AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA+IFDN
Sbjct: 1046 ASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAATIFDN 1105
Query: 841 IAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900
IAYGK+GATE+EV++AARAAN HGF+S LP YKTPVGERGVQLSGGQKQRIAIARAVLK
Sbjct: 1106 IAYGKDGATESEVIDAARAANAHGFISGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLK 1165
Query: 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIV 960
NP +LLLDEATSALDAESECVLQEALERLMRGRTTV+VAHRLSTIRGVDCIGV+QD RIV
Sbjct: 1166 NPTVLLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRGVDCIGVIQDERIV 1225
Query: 961 EQGSHSELVSRPDGAYSRLLQLQHHHI 987
EQGSHSELVSRP+GAYSRLLQLQ H I
Sbjct: 1226 EQGSHSELVSRPEGAYSRLLQLQTHRI 1252
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 987 | ||||||
| TAIR|locus:2090734 | 1252 | ABCB19 "ATP-binding cassette B | 1.0 | 0.788 | 0.808 | 0.0 | |
| UNIPROTKB|Q0JCP1 | 1259 | Os04g0459000 "Os04g0459000 pro | 0.998 | 0.783 | 0.776 | 0.0 | |
| TAIR|locus:2057961 | 1286 | ABCB1 "ATP-binding cassette B1 | 0.583 | 0.447 | 0.506 | 9.2e-257 | |
| UNIPROTKB|Q7EZL2 | 1344 | P0705A05.112-2 "Putative P-gly | 0.996 | 0.732 | 0.485 | 4.1e-246 | |
| TAIR|locus:2120805 | 1273 | ABCB2 "ATP-binding cassette B2 | 0.578 | 0.448 | 0.506 | 9.2e-246 | |
| TAIR|locus:2019958 | 1227 | PGP10 "P-glycoprotein 10" [Ara | 0.581 | 0.467 | 0.494 | 8.2e-245 | |
| UNIPROTKB|Q8GU75 | 1264 | mdr11 "MDR-like ABC transporte | 0.987 | 0.771 | 0.478 | 7e-244 | |
| TAIR|locus:2010464 | 1245 | ABCB13 "ATP-binding cassette B | 0.982 | 0.779 | 0.463 | 1.5e-234 | |
| TAIR|locus:2010444 | 1247 | ABCB14 "ATP-binding cassette B | 0.983 | 0.778 | 0.464 | 8.1e-234 | |
| UNIPROTKB|Q6YUU5 | 1245 | LOC_Os02g09720 "Putative multi | 0.986 | 0.782 | 0.444 | 1.6e-221 |
| TAIR|locus:2090734 ABCB19 "ATP-binding cassette B19" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4026 (1422.3 bits), Expect = 0., P = 0.
Identities = 798/987 (80%), Positives = 852/987 (86%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
MAKGLGLGCTYGIACMSWALVFWYAGVFIRNG TDGGKAFTAIFSAIVGGMSLGQSFSNL
Sbjct: 266 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNL 325
Query: 61 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 120
GAFSKGKAAGYKLMEII Q+P+IIQDP +G+CLD+V+GNIEFK+VTFSYPSRPDV+IFR+
Sbjct: 326 GAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQVHGNIEFKDVTFSYPSRPDVMIFRN 385
Query: 121 FSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
F+IFFP LIERFYDPN+G +LLD V+IKTLQL++LR+QIGL
Sbjct: 386 FNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQLKFLREQIGL 445
Query: 181 VNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLS 240
VNQEPALFATTILENILYGKP HSFITLLP GY TQVGERGVQLS
Sbjct: 446 VNQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQVGERGVQLS 505
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300
GGQKQRIAIARAMLK+PKILLLDEATSALDA SESIVQEALDR+MVGRTTVVVAHRL TI
Sbjct: 506 GGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTVVVAHRLCTI 565
Query: 301 RNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPXXXXXXXXXXXX 360
RNVD++AVIQQGQVVETGTHEELIAK+GAYASLIRFQEMV RDF+NP
Sbjct: 566 RNVDSIAVIQQGQVVETGTHEELIAKSGAYASLIRFQEMVGTRDFSNPSTRRTRSTRLSH 625
Query: 361 XXXXXXXXXXXXXXXXXXXXXXTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWP 420
TGADGRIEM+SNAETDRK AP+ YF RLLKLN+PEWP
Sbjct: 626 SLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNAETDRKTRAPENYFYRLLKLNSPEWP 685
Query: 421 YSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAY 480
YSIMGA+GS+LSGFIGPTFAIVM+ MIEVFYY + SMERKTKE+VFIYIGAGLYAV AY
Sbjct: 686 YSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDYDSMERKTKEYVFIYIGAGLYAVGAY 745
Query: 481 LIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIA 540
LIQHYFFSIMGENLTTRVRRMML+AILRNEVGWFDE+EHNSSL+AARLATDAADVKSAIA
Sbjct: 746 LIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWFDEDEHNSSLIAARLATDAADVKSAIA 805
Query: 541 DRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAH 600
+RISVILQNMTSLLTSFIVAFIVEWRVSLLILGT+PLLVLANFAQQLSLKGFAGDTAKAH
Sbjct: 806 ERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTFPLLVLANFAQQLSLKGFAGDTAKAH 865
Query: 601 AKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALH 660
AKTSMIAGEGVSNIRTVAAFNAQ+KILSLFCHELRVPQ ++L RS T+G LFG+SQ AL+
Sbjct: 866 AKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHELRVPQKRSLYRSQTSGFLFGLSQLALY 925
Query: 661 ASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAPEIIRGGESVGSVFS 720
SEALILWYG HLV KGVSTFSK TANSVAETVSLAPEIIRGGE+VGSVFS
Sbjct: 926 GSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFS 985
Query: 721 TLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVG 780
LDR TRIDPDD DA+PVETIRG+IE RHVDFAYPSRPDV+VF+DFNLRIRAG SQALVG
Sbjct: 986 VLDRQTRIDPDDADADPVETIRGDIEFRHVDFAYPSRPDVMVFRDFNLRIRAGHSQALVG 1045
Query: 781 ASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDN 840
ASGSGKSSVIA+IERFYDP AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA+IFDN
Sbjct: 1046 ASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAATIFDN 1105
Query: 841 IAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900
IAYGK+G HGF+S LP YKTPVGERGVQLSGGQKQRIAIARAVLK
Sbjct: 1106 IAYGKDGATESEVIDAARAANAHGFISGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLK 1165
Query: 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIV 960
NP +LLLDEATSALDAESECVLQEALERLMRGRTTV+VAHRLSTIRGVDCIGV+QDGRIV
Sbjct: 1166 NPTVLLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRGVDCIGVIQDGRIV 1225
Query: 961 EQGSHSELVSRPDGAYSRLLQLQHHHI 987
EQGSHSELVSRP+GAYSRLLQLQ H I
Sbjct: 1226 EQGSHSELVSRPEGAYSRLLQLQTHRI 1252
|
|
| UNIPROTKB|Q0JCP1 Os04g0459000 "Os04g0459000 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 3905 (1379.7 bits), Expect = 0., P = 0.
Identities = 767/988 (77%), Positives = 841/988 (85%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
MAKGLG+GCTYGIACMSWALVFWYAGVFIRNG TDGGKAFTAIFSAIVGG+SLGQSFSNL
Sbjct: 271 MAKGLGIGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGLSLGQSFSNL 330
Query: 61 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 120
GAFSKGK AGYKL+E+I+Q+P+I+QDP +GRCLDEV+GNIEFK V FSYPSRPDV+IFRD
Sbjct: 331 GAFSKGKIAGYKLLEVIRQRPTIVQDPADGRCLDEVHGNIEFKEVAFSYPSRPDVMIFRD 390
Query: 121 FSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
FS+FFP LIERFYDPN G VLLDNVDIKTLQL+WLRDQIGL
Sbjct: 391 FSLFFPAGKTAAVVGGSGSGKSTVVALIERFYDPNQGQVLLDNVDIKTLQLKWLRDQIGL 450
Query: 181 VNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLS 240
VNQEPALFATTILENILYGKP HSFI LLPNGY+TQVGERG+QLS
Sbjct: 451 VNQEPALFATTILENILYGKPDATMAEVEAAATSANAHSFIALLPNGYNTQVGERGLQLS 510
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300
GGQKQRIAIARAMLKNPKILLLDEATSALDAGSE+IVQEALDRLMVGRTTVVVAHRLSTI
Sbjct: 511 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSENIVQEALDRLMVGRTTVVVAHRLSTI 570
Query: 301 RNVDTVAVIQQGQVVETGTHEELIAK--AGAYASLIRFQEMVRNRDFANPXXXXXXXXXX 358
R VD +AVIQQGQVVETGTH+EL+AK +GAYA+LIRFQEM RNRDF P
Sbjct: 571 RCVDMIAVIQQGQVVETGTHDELLAKGSSGAYAALIRFQEMARNRDFRGPSTRKSRSSRL 630
Query: 359 XXXXXXXXXXXXXXXXXXXXXXXXTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPE 418
TGADGRIEMVSNA+ DRK PAP GYF +LLKLNAPE
Sbjct: 631 SNSLSTRSLSLRSGSLRNLSYSYSTGADGRIEMVSNADNDRKYPAPKGYFFKLLKLNAPE 690
Query: 419 WPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVV 478
WPY+I+GAIGS+LSGFIGPTFAIVM+ MIEVFY+R+P +MERKT+E+VFIYIG GLYAVV
Sbjct: 691 WPYTILGAIGSILSGFIGPTFAIVMSNMIEVFYFRDPNAMERKTREYVFIYIGTGLYAVV 750
Query: 479 AYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSA 538
AYL+QHYFFSIMGENLTTRVRRMMLAAILRN+VGWFD+EE+NSSLVAARL+TDAADVKSA
Sbjct: 751 AYLVQHYFFSIMGENLTTRVRRMMLAAILRNDVGWFDQEENNSSLVAARLSTDAADVKSA 810
Query: 539 IADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAK 598
IA+RISVILQNMTSLL SF+V FI+EWRV++LIL T+PLLVLANFAQQLS+KGFAGDTAK
Sbjct: 811 IAERISVILQNMTSLLVSFVVGFIIEWRVAVLILVTFPLLVLANFAQQLSMKGFAGDTAK 870
Query: 599 AHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFA 658
AHAKTSMIAGEGVSNIRTVAAFNAQ+K+LSLFC ELRVPQ +LRRS +G LFG+SQ +
Sbjct: 871 AHAKTSMIAGEGVSNIRTVAAFNAQDKVLSLFCTELRVPQMHSLRRSQISGALFGLSQLS 930
Query: 659 LHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAPEIIRGGESVGSV 718
L+ASEALILWYG HLV VSTFSK TAN+VAETVSLAPEI+RGGES+ SV
Sbjct: 931 LYASEALILWYGAHLVRHHVSTFSKVIKVFVVLVITANTVAETVSLAPEIVRGGESIRSV 990
Query: 719 FSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQAL 778
F+ L+ TRIDPD+P+ EPVE++RG+I+ RHVDFAYPSRPDV+VFKDF+LRIRAGQSQAL
Sbjct: 991 FAILNYRTRIDPDEPETEPVESVRGDIDFRHVDFAYPSRPDVMVFKDFSLRIRAGQSQAL 1050
Query: 779 VGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIF 838
VGASGSGKS+VIALIERFYDP AGKVMIDGKDIRRLN++SLRLKIGLVQQEP LFA SIF
Sbjct: 1051 VGASGSGKSTVIALIERFYDPLAGKVMIDGKDIRRLNVRSLRLKIGLVQQEPVLFATSIF 1110
Query: 839 DNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 898
+NIAYGK+G HGFVSALP YKTPVGERGVQLSGGQKQRIAIARAV
Sbjct: 1111 ENIAYGKDGATEEEVIEAAKVANMHGFVSALPEGYKTPVGERGVQLSGGQKQRIAIARAV 1170
Query: 899 LKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGR 958
LK+PA+LLLDEATSALDAESECVLQEALER+M+GRT VLVAHRLSTIRGVD I VVQDGR
Sbjct: 1171 LKDPAVLLLDEATSALDAESECVLQEALERIMKGRTAVLVAHRLSTIRGVDSIAVVQDGR 1230
Query: 959 IVEQGSHSELVSRPDGAYSRLLQLQHHH 986
+VEQGSH ELVSRPDGAYSRLLQLQ HH
Sbjct: 1231 VVEQGSHGELVSRPDGAYSRLLQLQLHH 1258
|
|
| TAIR|locus:2057961 ABCB1 "ATP-binding cassette B1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1537 (546.1 bits), Expect = 9.2e-257, Sum P(2) = 9.2e-257
Identities = 293/578 (50%), Positives = 415/578 (71%)
Query: 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVF 467
F RL K+N+PEW Y+++G++GSV+ G + FA V++ ++ V+Y + M ++ ++ +
Sbjct: 686 FWRLAKMNSPEWKYALLGSVGSVICGSLSAFFAYVLSAVLSVYYNPDHEYMIKQIDKYCY 745
Query: 468 IYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAAR 527
+ IG A+V +QH F+ I+GENLT RVR ML+A+L+NE+ WFD+EE+ S+ +AAR
Sbjct: 746 LLIGLSSAALVFNTLQHSFWDIVGENLTKRVREKMLSAVLKNEMAWFDQEENESARIAAR 805
Query: 528 LATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQL 587
LA DA +V+SAI DRISVI+QN +L + F+++WR++L+++ +P++V A Q++
Sbjct: 806 LALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKM 865
Query: 588 SLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 647
+ GF+GD AHAK + +AGE ++N+RTVAAFN++ KI+ L+ L P + +
Sbjct: 866 FMTGFSGDLEAAHAKGTQLAGEAIANVRTVAAFNSEAKIVRLYTANLEPPLKRCFWKGQI 925
Query: 648 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAPE 707
AG +G++QF L+AS AL LWY LV G+S FSK +AN AET++LAP+
Sbjct: 926 AGSGYGVAQFCLYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPD 985
Query: 708 IIRGGESVGSVFSTLDRSTRIDPDDPDAEPV-ETIRGEIELRHVDFAYPSRPDVVVFKDF 766
I+GG+++ SVF LDR T I+PDDPD PV + +RGE+EL+H+DF+YPSRPD+ +F+D
Sbjct: 986 FIKGGQAMRSVFELLDRKTEIEPDDPDTTPVPDRLRGEVELKHIDFSYPSRPDIQIFRDL 1045
Query: 767 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 826
+LR RAG++ ALVG SG GKSSVI+LI+RFY+P++G+VMIDGKDIR+ NLK++R I +V
Sbjct: 1046 SLRARAGKTLALVGPSGCGKSSVISLIQRFYEPSSGRVMIDGKDIRKYNLKAIRKHIAIV 1105
Query: 827 QQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSG 886
QEP LF +I++NIAYG E H F+SALP YKT VGERGVQLSG
Sbjct: 1106 PQEPCLFGTTIYENIAYGHECATEAEIIQAATLASAHKFISALPEGYKTYVGERGVQLSG 1165
Query: 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR 946
GQKQRIAIARA+++ I+LLDEATSALDAESE +QEAL++ GRT+++VAHRLSTIR
Sbjct: 1166 GQKQRIAIARALVRKAEIMLLDEATSALDAESERSVQEALDQACSGRTSIVVAHRLSTIR 1225
Query: 947 GVDCIGVVQDGRIVEQGSHSELV-SRPDGAYSRLLQLQ 983
I V+ DG++ EQGSHS L+ + PDG Y+R++QLQ
Sbjct: 1226 NAHVIAVIDDGKVAEQGSHSHLLKNHPDGIYARMIQLQ 1263
|
|
| UNIPROTKB|Q7EZL2 P0705A05.112-2 "Putative P-glycoprotein 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2371 (839.7 bits), Expect = 4.1e-246, P = 4.1e-246
Identities = 485/998 (48%), Positives = 653/998 (65%)
Query: 2 AKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLG 61
AKG+GLG TY +AL+ WY G +R T+GG A +FS ++GG++LGQS ++
Sbjct: 336 AKGIGLGGTYFTVFCCYALLLWYGGHLVRRAHTNGGLAIATMFSVMIGGLALGQSAPSMA 395
Query: 62 AFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDF 121
AF+K + A K+ +++ KPS+ ++ G L+ V G +E ++V FSYPSRPDV I R
Sbjct: 396 AFAKARVAAAKIFRMMEHKPSMERE--GGVELEAVTGRVELRDVEFSYPSRPDVGILRGL 453
Query: 122 SIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLV 181
S+ P LIERFY+PNAG +LLD D++ L LRWLR QIGLV
Sbjct: 454 SLSVPAGKTIALVGSSGSGKSTVVSLIERFYEPNAGTILLDGHDLRDLNLRWLRRQIGLV 513
Query: 182 NQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLSG 241
+QEPALFATTI EN+L G+ HSFI LP+ Y+TQVGERG+QLSG
Sbjct: 514 SQEPALFATTIRENLLLGRDGATQEELEEAARVANAHSFIVKLPDAYNTQVGERGLQLSG 573
Query: 242 GQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIR 301
GQKQRIAIARAML+NP ILLLDEATSALD+ SE +VQEALDR M+GRTT+V+AHRLSTIR
Sbjct: 574 GQKQRIAIARAMLRNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIR 633
Query: 302 NVDTVAVIQQGQVVETGTHEELIAKA-GAYASLIRFQEMVRNRDFANPXXXXXXXXXXXX 360
D VAV+Q G + E GTH+EL+A+ G YA LIR QE
Sbjct: 634 KADLVAVLQGGAISEVGTHDELMARGDGTYARLIRMQEQAHEAALVAARRSSARPSSARN 693
Query: 361 XXXXXXXXXXXXXXXXXXXXXXTGAD---GRIEMVSNAETDRKN--PAPDGYFLRLLKLN 415
+ AD G V + + +++ F RL K+N
Sbjct: 694 SVSSPIITRNSSYGRSPYSRRLSDADFITGLGLGVDSKQQQQQHYFRVQASSFWRLAKMN 753
Query: 416 APEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLY 475
+PEW Y+++ ++GS++ G FA V++ ++ V+Y + A M+R+ ++ ++ IG
Sbjct: 754 SPEWGYALVASLGSMVCGSFSAIFAYVLSAVLSVYYAPDAAYMDRQIAKYCYLLIGMSSA 813
Query: 476 AVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADV 535
A++ +QH F+ +GENLT RVR MLAA+LRNE+ WFD E+++S+ +AARLA DA +V
Sbjct: 814 ALLFNTVQHLFWDTVGENLTKRVRERMLAAVLRNEIAWFDMEDNSSARIAARLALDAQNV 873
Query: 536 KSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGD 595
+SAI DRIS+I+QN +L + F+++WR++L++L +PL+V A Q++ LKGF+GD
Sbjct: 874 RSAIGDRISIIVQNSALMLVACTAGFVLQWRLALVLLAVFPLVVAATVLQKMFLKGFSGD 933
Query: 596 TAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGIS 655
+AHA+ + IAGE V+N+RTVAAF ++ KI+ LF L P + + AG +G++
Sbjct: 934 LERAHARATQIAGEAVANVRTVAAFGSEAKIVGLFEANLAGPLRRCFWKGQIAGSGYGVA 993
Query: 656 QFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAPEIIRGGESV 715
QF L+AS AL LWY LV GVS FSK +AN AET++LAP+ ++GG ++
Sbjct: 994 QFLLYASYALGLWYAAWLVKHGVSDFSKTIRVFMVLMVSANGAAETLTLAPDFVKGGRAM 1053
Query: 716 GSVFSTLDRSTRIDPDDPDAEPV-ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQ 774
+VF +DR T I+PDD DA V E RGE+EL+HVDFAYPSRP+V VF+D +LR RAG+
Sbjct: 1054 QAVFEAMDRRTEIEPDDVDAAAVPERPRGEVELKHVDFAYPSRPEVQVFRDLSLRARAGR 1113
Query: 775 SQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA 834
+ ALVGASG GKSSV+AL++RFY+P +G+V++DG+D+R+ NL+SLR + LV QEP LFA
Sbjct: 1114 TLALVGASGCGKSSVLALVQRFYEPNSGRVLLDGRDLRKFNLRSLRRAMALVPQEPFLFA 1173
Query: 835 ASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894
A+I DNIAYG+EG H F+SALP Y T VGERGVQLSGGQ+QRIAI
Sbjct: 1174 ATIHDNIAYGREGATEAEVVEAATAANAHKFISALPEGYGTLVGERGVQLSGGQRQRIAI 1233
Query: 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGV 953
ARA++K ILLLDEATSALDAESE +QEAL GRTT++VAHRL+T+R I V
Sbjct: 1234 ARALVKQAPILLLDEATSALDAESERSVQEALASSSGSGRTTIVVAHRLATVRNAHTIAV 1293
Query: 954 VQDGRIVEQGSHSELVSR-PDGAYSRLLQLQ---HHHI 987
+ DG++ EQGSHS L++ PDG Y+R+LQLQ H H+
Sbjct: 1294 IDDGKVAEQGSHSHLLNHHPDGCYARMLQLQRLSHSHV 1331
|
|
| TAIR|locus:2120805 ABCB2 "ATP-binding cassette B2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1484 (527.5 bits), Expect = 9.2e-246, Sum P(2) = 9.2e-246
Identities = 291/574 (50%), Positives = 403/574 (70%)
Query: 410 RLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIY 469
RL + P+W Y + G I + ++G P FA+ ++ + V YY +++ K+ ++
Sbjct: 698 RLYSMIRPDWMYGVCGTICAFIAGSQMPLFALGVSQAL-VSYYSGWDETQKEIKKIAILF 756
Query: 470 IGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLA 529
A + ++ Y I+H F MGE LT RVR M AIL+NE+GWFDE ++ SS++A+RL
Sbjct: 757 CCASVITLIVYTIEHICFGTMGERLTLRVRENMFRAILKNEIGWFDEVDNTSSMLASRLE 816
Query: 530 TDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSL 589
+DA +K+ + DR +++LQN+ ++TSFI+AFI+ WR++L++L TYPL++ + +++L +
Sbjct: 817 SDATLLKTIVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVLATYPLVISGHISEKLFM 876
Query: 590 KGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAG 649
+G+ GD KA+ K +M+AGE VSNIRTVAAF A+ KIL L+ EL P + RR AG
Sbjct: 877 QGYGGDLNKAYLKANMLAGESVSNIRTVAAFCAEEKILELYSRELLEPSKSSFRRGQIAG 936
Query: 650 ILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAPEII 709
+ +G+SQF + +S L LWYG L+ KG++ F TA ++ ET++LAP+++
Sbjct: 937 LFYGVSQFFIFSSYGLALWYGSTLMDKGLAGFKSVMKTFMVLIVTALAMGETLALAPDLL 996
Query: 710 RGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLR 769
+G + V SVF LDR T+I + +E + + G IEL+ V F+YPSRPDVV+F+DF+L
Sbjct: 997 KGNQMVASVFEILDRKTQIVGET--SEELNNVEGTIELKGVHFSYPSRPDVVIFRDFDLI 1054
Query: 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQE 829
+RAG+S ALVG SGSGKSSVI+LI RFYDPTAGKVMI+GKDI++L+LK+LR IGLVQQE
Sbjct: 1055 VRAGKSMALVGQSGSGKSSVISLILRFYDPTAGKVMIEGKDIKKLDLKALRKHIGLVQQE 1114
Query: 830 PALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQK 889
PALFA +I++NI YG EG H F+++LP Y T VGERGVQ+SGGQ+
Sbjct: 1115 PALFATTIYENILYGNEGASQSEVVESAMLANAHSFITSLPEGYSTKVGERGVQMSGGQR 1174
Query: 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVD 949
QRIAIARA+LKNPAILLLDEATSALD ESE V+Q+AL+RLM RTTV+VAHRLSTI+ D
Sbjct: 1175 QRIAIARAILKNPAILLLDEATSALDVESERVVQQALDRLMANRTTVVVAHRLSTIKNAD 1234
Query: 950 CIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
I V+ G+IVEQGSH +LV G Y +L+ LQ
Sbjct: 1235 TISVLHGGKIVEQGSHRKLVLNKSGPYFKLISLQ 1268
|
|
| TAIR|locus:2019958 PGP10 "P-glycoprotein 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1485 (527.8 bits), Expect = 8.2e-245, Sum P(2) = 8.2e-245
Identities = 287/580 (49%), Positives = 408/580 (70%)
Query: 410 RLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIY 469
RL + P+W Y + G +GS ++G P FA+ +A + V YY + + + + K ++
Sbjct: 650 RLYSMIRPDWKYGLCGTLGSFIAGSQMPLFALGIAQAL-VSYYMDWETTQNEVKRISILF 708
Query: 470 IGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLA 529
+ V+ + I+H F IMGE LT RVR+ M +AILRNE+GWFD+ ++ SS++A+RL
Sbjct: 709 CCGSVITVIVHTIEHTTFGIMGERLTLRVRQKMFSAILRNEIGWFDKVDNTSSMLASRLE 768
Query: 530 TDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSL 589
+DA +++ + DR +++L+N+ ++T+FI++FI+ WR++L++L TYPL++ + ++++ +
Sbjct: 769 SDATLLRTIVVDRSTILLENLGLVVTAFIISFILNWRLTLVVLATYPLIISGHISEKIFM 828
Query: 590 KGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAG 649
+G+ G+ +KA+ K +M+AGE +SNIRTV AF A+ K+L L+ EL P ++ RR AG
Sbjct: 829 QGYGGNLSKAYLKANMLAGESISNIRTVVAFCAEEKVLDLYSKELLEPSERSFRRGQMAG 888
Query: 650 ILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAPEII 709
IL+G+SQF + +S L LWYG L+ KG+S+F TA + E ++LAP+++
Sbjct: 889 ILYGVSQFFIFSSYGLALWYGSILMEKGLSSFESVMKTFMVLIVTALVMGEVLALAPDLL 948
Query: 710 RGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLR 769
+G + V SVF LDR T++ D E + + G IEL+ V F+YPSRPDV +F DFNL
Sbjct: 949 KGNQMVVSVFELLDRRTQVVGDT--GEELSNVEGTIELKGVHFSYPSRPDVTIFSDFNLL 1006
Query: 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQE 829
+ +G+S ALVG SGSGKSSV++L+ RFYDPTAG +MIDG+DI++L LKSLR IGLVQQE
Sbjct: 1007 VPSGKSMALVGQSGSGKSSVLSLVLRFYDPTAGIIMIDGQDIKKLKLKSLRRHIGLVQQE 1066
Query: 830 PALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQK 889
PALFA +I++NI YGKEG H F+S+LP Y T VGERG+Q+SGGQ+
Sbjct: 1067 PALFATTIYENILYGKEGASESEVMEAAKLANAHSFISSLPEGYSTKVGERGIQMSGGQR 1126
Query: 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVD 949
QRIAIARAVLKNP ILLLDEATSALD ESE V+Q+AL+RLMR RTTV+VAHRLSTI+ D
Sbjct: 1127 QRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMRDRTTVVVAHRLSTIKNSD 1186
Query: 950 CIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH---HH 986
I V+QDG+I+EQGSH+ LV +G YS+L+ LQ HH
Sbjct: 1187 MISVIQDGKIIEQGSHNILVENKNGPYSKLISLQQRQRHH 1226
|
|
| UNIPROTKB|Q8GU75 mdr11 "MDR-like ABC transporter" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2350 (832.3 bits), Expect = 7.0e-244, P = 7.0e-244
Identities = 471/984 (47%), Positives = 648/984 (65%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
+AKGLGLG + + +SWAL+ W+ V + +++GG++FT + + ++ G+SLGQ+ N+
Sbjct: 277 LAKGLGLGSMHSVLFLSWALLIWFTSVVVHKNISNGGESFTTMLNVVIAGLSLGQAAPNI 336
Query: 61 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 120
F + + A Y + ++I++ GR L V+G+I+F++V F+YPSRPDV+I
Sbjct: 337 STFLRARTAAYPIFQMIERNTVNKASSKAGRTLPSVDGHIQFRDVRFAYPSRPDVVILDR 396
Query: 121 FSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
FS+ FP LIERFY+P G VLLD DIK L ++WLR QIGL
Sbjct: 397 FSLDFPAGKIVALVGGSGSGKSTVVSLIERFYEPLTGAVLLDGHDIKDLDVKWLRQQIGL 456
Query: 181 VNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLS 240
VNQEPALFAT+I ENILYGK +FI LP+ Y TQVGERG+QLS
Sbjct: 457 VNQEPALFATSIRENILYGKGDASMDEINHAAKLSEAITFINHLPDRYETQVGERGIQLS 516
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300
GGQKQRIAI+RA+LKNP ILLLDEATSALDA SE VQEALDR+MVGRTTVV+AHRLSTI
Sbjct: 517 GGQKQRIAISRAILKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVIAHRLSTI 576
Query: 301 RNVDTVAVIQQGQVVETGTHEELIAKA-GAYASLIRFQEMVRNRDFANPXXXXXXXXXXX 359
RN DT+AV+ G++VETGTHE+L+A AYASLI+ QE + ++
Sbjct: 577 RNADTIAVVDSGRIVETGTHEQLMANPRSAYASLIQLQEAAQLQN-KQSFSDSASLSRPL 635
Query: 360 XXXXXXXXXXXXXXXXXXXXXXXTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEW 419
G +E ++ E K+ +L + P+W
Sbjct: 636 SSKYSRELSRTSMGGSFRSEKDSVSRYGTVE--AHDEGGHKSKPVS--MKKLYSMIRPDW 691
Query: 420 PYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVA 479
+ + G + + ++G P FA+ + + V YY + +R+ ++ ++ + VV
Sbjct: 692 FFGVSGTVSAFVAGSQMPLFALGVTQAL-VSYYMGWETTKREVRKIAVLFCCGAVLTVVF 750
Query: 480 YLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAI 539
+ I+H F IMGE LT RVR M AAILRNE+GWFD+ H SS++++RL TDA V++ +
Sbjct: 751 HAIEHLSFGIMGERLTLRVRERMFAAILRNEIGWFDDTSHTSSMLSSRLETDATLVRTIV 810
Query: 540 ADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKA 599
DR +++LQN+ ++TS I+AFI+ WR++L++L TYPL+V + ++++ +KG+ G+ K+
Sbjct: 811 VDRSTILLQNIGMIVTSLIIAFIINWRITLVVLATYPLMVSGHISEKMFMKGYGGNLGKS 870
Query: 600 HAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFAL 659
+ K +M+A E VSNIRTVAAF A+ K++ L+ EL+ P Q+ RR AG+ +G+SQF L
Sbjct: 871 YLKANMLAAEAVSNIRTVAAFCAEEKVIKLYADELKEPAKQSFRRGQGAGLFYGVSQFFL 930
Query: 660 HASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAPEIIRGGESVGSVF 719
+S AL LWYG L+ K +++F TA ++ ET+++AP+II+G + V SVF
Sbjct: 931 FSSYALALWYGSELMSKEMASFKSVMKSFMVLIVTALAMGETLAMAPDIIKGNQMVSSVF 990
Query: 720 STLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALV 779
LDR T + D V+ + G IELR V+F YP+RP+VVVFK +L ++AG+S ALV
Sbjct: 991 EILDRKTDVLIDA--GNDVKRVEGVIELRGVEFRYPARPEVVVFKGLDLLMKAGKSMALV 1048
Query: 780 GASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 839
G SGSGKS+V++LI RFYDP AGKV+IDGKDIR++ LKSLR IGLVQQEPALFA +I+D
Sbjct: 1049 GMSGSGKSTVLSLILRFYDPIAGKVLIDGKDIRKVKLKSLRKHIGLVQQEPALFATTIYD 1108
Query: 840 NIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899
NI YGK+G H F+SALP Y+T VGERGVQLSGGQ+QRIAIARA++
Sbjct: 1109 NILYGKDGATEAEVVDAAKLANAHSFISALPEGYRTRVGERGVQLSGGQRQRIAIARAIV 1168
Query: 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRI 959
K+PAILLLDEATSALD ESE V+Q+AL+R+MR RTTV+VAHRLSTI+ D I V+QDG+I
Sbjct: 1169 KDPAILLLDEATSALDVESERVVQQALDRVMRNRTTVMVAHRLSTIKNADVISVLQDGKI 1228
Query: 960 VEQGSHSELVSRPDGAYSRLLQLQ 983
+EQG+H +L+ +GAY +L+ LQ
Sbjct: 1229 IEQGAHHQLIENRNGAYHKLVSLQ 1252
|
|
| TAIR|locus:2010464 ABCB13 "ATP-binding cassette B13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2262 (801.3 bits), Expect = 1.5e-234, P = 1.5e-234
Identities = 456/984 (46%), Positives = 629/984 (63%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
+AKGLG+G TY + +WAL+ WYA + +R+G T+G KAFT I + I G +LGQ+ +L
Sbjct: 272 LAKGLGVGLTYSLLFCAWALLLWYASLLVRHGKTNGAKAFTTILNVIFSGFALGQAAPSL 331
Query: 61 GAFSKGKAAGYKLMEIIKQKPS-IIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFR 119
A +KG+ A + +I S Q G L V G IEF+ V+F+YPSRP+++ F
Sbjct: 332 SAIAKGRVAAANIFRMIGNNNSESSQRLDEGTTLQNVAGRIEFQKVSFAYPSRPNMV-FE 390
Query: 120 DFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179
+ S +++RFY+PN+G +LLD DIK+L+L+W R+Q+G
Sbjct: 391 NLSFTIRSGKTFAFVGPSGSGKSTIISMVQRFYEPNSGEILLDGNDIKSLKLKWFREQLG 450
Query: 180 LVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQL 239
LV+QEPALFATTI NIL GK SFI LPNGY+TQVGE G QL
Sbjct: 451 LVSQEPALFATTIASNILLGKENANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGGTQL 510
Query: 240 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLST 299
SGGQKQRIAIARA+L+NPKILLLDEATSALDA SE IVQ+ALD +M RTT+VVAHRLST
Sbjct: 511 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVVAHRLST 570
Query: 300 IRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPXXXXXXXXXXX 359
IRNVD + V++ GQV ETG+H EL+ + G YA+L+ QE P
Sbjct: 571 IRNVDKIVVLRDGQVRETGSHSELMLRGGDYATLVNCQE-------TEPQENSRSIMSET 623
Query: 360 XXXXXXXXXXXXXXXXXXXXXXXTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEW 419
E N ++ +K+ + L+KLN+PEW
Sbjct: 624 CKSQAGSSSSRRVSSSRRTSSFRVDQ----EKTKNDDS-KKDFSSSSMIWELIKLNSPEW 678
Query: 420 PYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVA 479
PY+++G+IG+VL+G P F++ +A ++ FY P ++R ++ I+ GAG+
Sbjct: 679 PYALLGSIGAVLAGAQTPLFSMGIAYVLTAFYSPFPNVIKRDVEKVAIIFAGAGIVTAPI 738
Query: 480 YLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAI 539
YL+QHYF+++MGE LT+RVR + +AIL NE+GWFD +E+N+ + + LA DA V+SA+
Sbjct: 739 YLLQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAADATLVRSAL 798
Query: 540 ADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKA 599
ADR+S I+QN++ +T+ +AF WRV+ ++ +PLL+ A+ +QL LKGF GD +A
Sbjct: 799 ADRLSTIVQNLSLTVTALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKGFGGDYTRA 858
Query: 600 HAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFAL 659
+++ + +A E ++NIRTVAA+ A+ +I F EL P R +G +G+SQF
Sbjct: 859 YSRATSVAREAIANIRTVAAYGAEKQISEQFTCELSKPTKNAFVRGHISGFGYGLSQFLA 918
Query: 660 HASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAPEIIRGGESVGSVF 719
S AL LWY L+ + F TA SV+ET++L P+I++G +++GSVF
Sbjct: 919 FCSYALGLWYVSVLINHKETNFGDSIKSFMVLIVTAFSVSETLALTPDIVKGTQALGSVF 978
Query: 720 STLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALV 779
L R T+I PD P++ V ++G+IE R+V F YP+RP++ +FK+ NLR+ AG+S A+V
Sbjct: 979 RVLHRETKISPDQPNSRMVSQVKGDIEFRNVSFVYPTRPEIDIFKNLNLRVSAGKSLAVV 1038
Query: 780 GASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 839
G SGSGKS+VI LI RFYDP+ G + IDG+DI+ LNL+SLR K+ LVQQEPALF+ +I++
Sbjct: 1039 GPSGSGKSTVIGLIMRFYDPSNGNLCIDGQDIKTLNLRSLRKKLALVQQEPALFSTTIYE 1098
Query: 840 NIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899
NI YG E H F+ + YKT G++GVQLSGGQKQR+AIARAVL
Sbjct: 1099 NIKYGNENASEAEIMEAAKAANAHEFIIKMEEGYKTHAGDKGVQLSGGQKQRVAIARAVL 1158
Query: 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRI 959
K+P++LLLDEATSALD SE ++QEAL++LM+GRTTVLVAHRLSTIR D + V+ GR+
Sbjct: 1159 KDPSVLLLDEATSALDTSSEKLVQEALDKLMKGRTTVLVAHRLSTIRKADTVAVLHKGRV 1218
Query: 960 VEQGSHSELVSRPDGAYSRLLQLQ 983
VE+GSH ELVS P+G Y +L LQ
Sbjct: 1219 VEKGSHRELVSIPNGFYKQLTSLQ 1242
|
|
| TAIR|locus:2010444 ABCB14 "ATP-binding cassette B14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2255 (798.9 bits), Expect = 8.1e-234, P = 8.1e-234
Identities = 457/984 (46%), Positives = 631/984 (64%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
+AKGLG+G TY + +WAL+FWYA + +R+G T+G KAFT I + I G +LGQ+ +L
Sbjct: 273 LAKGLGVGLTYSLLFCAWALLFWYASLLVRHGKTNGAKAFTTILNVIYSGFALGQAVPSL 332
Query: 61 GAFSKGKAAGYKLMEII-KQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFR 119
A SKG+ A + ++I + NG L V G IEF V+F+YPSRP+++ F
Sbjct: 333 SAISKGRVAAANIFKMIGNNNLESSERLENGTTLQNVVGKIEFCGVSFAYPSRPNMV-FE 391
Query: 120 DFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179
+ S +++RFY+P +G +LLD DIK L+L+WLR+Q+G
Sbjct: 392 NLSFTIHSGKTFAFVGPSGSGKSTIISMVQRFYEPRSGEILLDGNDIKNLKLKWLREQMG 451
Query: 180 LVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQL 239
LV+QEPALFATTI NIL GK SFI LPNGY+TQVGE G QL
Sbjct: 452 LVSQEPALFATTIASNILLGKEKANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGGTQL 511
Query: 240 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLST 299
SGGQKQRIAIARA+L+NPKILLLDEATSALDA SE IVQ+ALD +M RTT+V+AHRLST
Sbjct: 512 SGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVIAHRLST 571
Query: 300 IRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPXXXXXXXXXXX 359
IRNVD + V++ GQV ETG+H ELI++ G YA+L+ Q+ + +
Sbjct: 572 IRNVDKIVVLRDGQVRETGSHSELISRGGDYATLVNCQDTEPQENLRSVMYESCRSQAGS 631
Query: 360 XXXXXXXXXXXXXXXXXXXXXXXTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEW 419
+ G +++S++ L+KLNAPEW
Sbjct: 632 YSSRRVFSSRRTSSFREDQEKTEKDSKGE-DLISSSSM----------IWELIKLNAPEW 680
Query: 420 PYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVA 479
Y+++G+IG+VL+G F++ +A ++ FY P+ ++R+ + I++GAG+
Sbjct: 681 LYALLGSIGAVLAGSQPALFSMGLAYVLTTFYSPFPSLIKREVDKVAIIFVGAGIVTAPI 740
Query: 480 YLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAI 539
Y++QHYF+++MGE LT+RVR + +AIL NE+GWFD +E+N+ + + LA DA V+SAI
Sbjct: 741 YILQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAADATLVRSAI 800
Query: 540 ADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKA 599
ADR+S I+QN++ +T+ +AF WRV+ ++ +PLL+ A+ +QL LKGF GD +A
Sbjct: 801 ADRLSTIVQNLSLTITALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKGFGGDYTRA 860
Query: 600 HAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFAL 659
+++ + +A E +SNIRTVAAF+A+ +I F EL P L R +G +G+SQ
Sbjct: 861 YSRATSLAREAISNIRTVAAFSAEKQISEQFTCELSKPTKSALLRGHISGFGYGLSQCLA 920
Query: 660 HASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAPEIIRGGESVGSVF 719
S AL LWY L+ + + F TA SVAET++L P+I++G +++GSVF
Sbjct: 921 FCSYALGLWYISVLIKRNETNFEDSIKSFMVLLVTAYSVAETLALTPDIVKGTQALGSVF 980
Query: 720 STLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALV 779
L R T I PD P++ V I+G+IE R+V FAYP+RP++ +FK+ NLR+ AG+S A+V
Sbjct: 981 RVLHRETEIPPDQPNSRLVTHIKGDIEFRNVSFAYPTRPEIAIFKNLNLRVSAGKSLAVV 1040
Query: 780 GASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 839
G SGSGKS+VI LI RFYDP+ G + IDG DI+ +NL+SLR K+ LVQQEPALF+ SI +
Sbjct: 1041 GPSGSGKSTVIGLIMRFYDPSNGNLCIDGHDIKSVNLRSLRKKLALVQQEPALFSTSIHE 1100
Query: 840 NIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899
NI YG E H F+S + Y T VG++GVQLSGGQKQR+AIARAVL
Sbjct: 1101 NIKYGNENASEAEIIEAAKAANAHEFISRMEEGYMTHVGDKGVQLSGGQKQRVAIARAVL 1160
Query: 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRI 959
K+P++LLLDEATSALD +E +QEAL++LM+GRTT+LVAHRLSTIR D I V+ G++
Sbjct: 1161 KDPSVLLLDEATSALDTSAEKQVQEALDKLMKGRTTILVAHRLSTIRKADTIVVLHKGKV 1220
Query: 960 VEQGSHSELVSRPDGAYSRLLQLQ 983
VE+GSH ELVS+ DG Y +L LQ
Sbjct: 1221 VEKGSHRELVSKSDGFYKKLTSLQ 1244
|
|
| UNIPROTKB|Q6YUU5 LOC_Os02g09720 "Putative multidrug resistance protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2139 (758.0 bits), Expect = 1.6e-221, P = 1.6e-221
Identities = 438/985 (44%), Positives = 614/985 (62%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
+AKG+ +G GI WA WY + GG F + +VGG++LG SN+
Sbjct: 261 LAKGIAVGSN-GITFAIWAFNVWYGSRLVMYHGYQGGTVFAVSAAIVVGGLALGSGLSNV 319
Query: 61 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 120
FS+ +A +++E+I++ P I + G L V G +EF+NV F YPSRP+ IF
Sbjct: 320 KYFSEASSAAERILEVIRRVPKIDSESDTGEELANVTGEVEFRNVEFCYPSRPESPIFVS 379
Query: 121 FSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
F++ P L+ERFYDP+AG V++D VDI+ L+L+WLR Q+GL
Sbjct: 380 FNLRVPAGRTVALVGGSGSGKSTVIALLERFYDPSAGEVMVDGVDIRRLRLKWLRAQMGL 439
Query: 181 VNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYSTQVGERGVQLS 240
V+QEPALFAT+I ENIL+GK H+FI+ LP GY TQVGERGVQ+S
Sbjct: 440 VSQEPALFATSIRENILFGKEEATAEEVVAAAKAANAHNFISQLPQGYDTQVGERGVQMS 499
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300
GGQKQRIAIARA+LK+PKILLLDEATSALD SE +VQEALD +GRTT+V+AHRLSTI
Sbjct: 500 GGQKQRIAIARAILKSPKILLLDEATSALDTESERVVQEALDLASMGRTTIVIAHRLSTI 559
Query: 301 RNVDTVAVIQQGQVVETGTHEELIAKA-GAYASLIRFQEMVRNRDFANPXXXXXXXXXXX 359
RN D +AV+Q G+V E G H+ELIA G Y+SL+R Q+ RD
Sbjct: 560 RNADIIAVMQSGEVKELGPHDELIANDNGLYSSLVRLQQ---TRDSNEIDEIGVTGSTSA 616
Query: 360 XXXXXXXXXXXXXXXXXXXXXXXTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEW 419
+ D R + N E K P P F RLL LNAPEW
Sbjct: 617 VGQSSSHSMSRRFSAASRSSSARSLGDARDD--DNTEKP-KLPVPS--FRRLLMLNAPEW 671
Query: 420 PYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVA 479
++MG+ +V+ G I P +A M MI V++ + A ++ KT+ + I++G + + +
Sbjct: 672 KQALMGSFSAVVFGGIQPAYAYAMGSMISVYFLTDHAEIKDKTRTYALIFVGLAVLSFLI 731
Query: 480 YLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAI 539
+ QHY F MGE LT R+R MLA IL E+GWFD +E++S + ++LA DA V+S +
Sbjct: 732 NIGQHYNFGAMGEYLTKRIREQMLAKILTFEIGWFDRDENSSGAICSQLAKDANVVRSLV 791
Query: 540 ADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKA 599
DR+++++Q ++++L + + ++ WR++L+++ PL+++ +A+++ LK + + A
Sbjct: 792 GDRMALVIQTISAVLIACTMGLVIAWRLALVMIAVQPLIIVCFYARRVLLKSMSKKSIHA 851
Query: 600 HAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFAL 659
A++S +A E VSN+RT+ AF++Q +IL LF P+ +++R+S AG+ G S +
Sbjct: 852 QAESSKLAAEAVSNLRTITAFSSQERILRLFEQSQDGPRKESIRQSWFAGLGLGTSMSLM 911
Query: 660 HASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAPEIIRGGESVGSVF 719
+ AL WYG L+ + + + T +A+ S+ ++ +G ++V SVF
Sbjct: 912 TCTWALDFWYGGRLMAEHHISAKELFQTFMILVSTGRVIADAGSMTTDLAKGADAVASVF 971
Query: 720 STLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALV 779
+ LDR T IDPD+P E ++GE+++R VDFAYPSRPDV++FK F L I+ G+S ALV
Sbjct: 972 AVLDRETEIDPDNPQGYKPEKLKGEVDIRGVDFAYPSRPDVIIFKGFTLSIQPGKSTALV 1031
Query: 780 GASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 839
G SGSGKS++I LIERFYDP G V IDG+DI+ NL++LR IGLV QEP LFA +I +
Sbjct: 1032 GQSGSGKSTIIGLIERFYDPIRGSVKIDGRDIKAYNLRALRRHIGLVSQEPTLFAGTIRE 1091
Query: 840 NIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899
NI YG E H F+S L + Y T GERGVQLSGGQKQRIAIARA+L
Sbjct: 1092 NIVYGTETASEAEIEDAARSANAHDFISNLKDGYDTWCGERGVQLSGGQKQRIAIARAIL 1151
Query: 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRI 959
KNPAILLLDEATSALD++SE V+QEAL+R+M GRT+V+VAHRLSTI+ D I V++ G +
Sbjct: 1152 KNPAILLLDEATSALDSQSEKVVQEALDRVMIGRTSVVVAHRLSTIQNCDLITVLEKGTV 1211
Query: 960 VEQGSHSELVSRP-DGAYSRLLQLQ 983
VE+G+H+ L+++ G Y L+ LQ
Sbjct: 1212 VEKGTHASLMAKGLSGTYFSLVNLQ 1236
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LJX0 | AB19B_ARATH | No assigned EC number | 0.8956 | 0.9756 | 0.7691 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.3.44 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.7.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 987 | |||
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-153 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-135 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-127 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-122 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-118 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-115 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-111 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-110 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-106 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-104 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-103 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-103 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-101 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 5e-97 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-96 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 8e-95 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 6e-94 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 6e-94 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 7e-93 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-92 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-89 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 9e-83 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-82 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-81 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-80 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-80 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 7e-80 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-79 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-79 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-78 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-77 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 5e-77 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-74 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-73 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-71 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-71 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-70 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-69 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-68 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 8e-68 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 8e-65 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-64 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 5e-64 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 6e-64 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 8e-64 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-63 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 6e-62 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-61 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 9e-60 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-59 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-58 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-58 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-58 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-58 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 8e-58 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-56 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 7e-56 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 7e-56 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-55 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 5e-55 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-53 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-52 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 5e-52 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 5e-52 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 5e-51 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-49 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 6e-47 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-46 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-46 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-46 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-46 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-45 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-45 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-44 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-44 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-43 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 5e-43 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-42 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-42 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-42 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-41 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-41 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-41 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-41 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-41 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 4e-41 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 5e-41 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 9e-41 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 9e-41 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-40 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-40 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-40 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 4e-40 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-40 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 4e-40 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 5e-40 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 8e-40 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-39 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-39 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-39 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-39 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 4e-39 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 5e-39 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 7e-39 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-38 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-38 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-38 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 7e-38 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-37 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-37 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-37 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 5e-37 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-37 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 8e-37 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-36 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-36 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-36 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-36 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 5e-36 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 7e-36 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 8e-36 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 8e-36 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 9e-36 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-35 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-35 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-35 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-35 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-35 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-35 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 4e-35 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 7e-35 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 8e-35 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-34 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-34 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 6e-34 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 7e-34 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 7e-34 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 7e-34 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 8e-34 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-33 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-33 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-33 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-33 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-33 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-33 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 7e-33 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 8e-33 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 8e-33 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-32 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-32 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-32 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-32 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-32 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-32 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-32 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-32 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 5e-32 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 5e-32 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 8e-32 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-31 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-31 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-31 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-31 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-31 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-31 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 4e-31 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-31 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 4e-31 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 8e-31 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 8e-31 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 9e-31 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 9e-31 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-30 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-30 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-30 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-30 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-30 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-30 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 3e-30 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-30 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-30 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-30 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 6e-30 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 7e-30 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-29 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-29 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-29 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-29 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-29 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-29 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-29 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-29 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-29 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 3e-29 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 4e-29 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-29 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 4e-29 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 4e-29 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 9e-29 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 9e-29 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-28 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-28 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-28 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-28 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-28 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-28 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-28 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-28 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-28 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 4e-28 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 4e-28 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 6e-28 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 7e-28 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 7e-28 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 9e-28 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-27 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-27 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-27 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-27 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 3e-27 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-27 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 4e-27 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-27 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 5e-27 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 6e-27 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 8e-27 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-26 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-26 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-26 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-26 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-26 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-26 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-26 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-26 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-26 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-26 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-26 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-26 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-26 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 3e-26 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-26 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-26 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-26 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-26 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-26 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 4e-26 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-26 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 5e-26 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 5e-26 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 5e-26 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-26 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 6e-26 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 6e-26 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 6e-26 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 6e-26 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 6e-26 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-26 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 7e-26 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 7e-26 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 8e-26 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 9e-26 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 9e-26 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-25 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-25 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-25 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-25 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-25 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-25 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-25 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-25 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-25 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-25 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 3e-25 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-25 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-25 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-25 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 4e-25 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 4e-25 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-25 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 5e-25 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 5e-25 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 7e-25 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 8e-25 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 9e-25 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 9e-25 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-24 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-24 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-24 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-24 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-24 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-24 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-24 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-24 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-24 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-24 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-24 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-24 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 3e-24 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-24 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-24 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-24 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-24 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 4e-24 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-24 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-24 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 5e-24 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 5e-24 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 5e-24 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 5e-24 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 6e-24 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 7e-24 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 7e-24 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 8e-24 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 8e-24 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 9e-24 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 9e-24 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-23 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-23 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-23 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-23 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-23 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-23 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-23 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-23 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-23 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 3e-23 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-23 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 3e-23 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 4e-23 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-23 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-23 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 4e-23 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 5e-23 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 5e-23 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 5e-23 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 5e-23 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 5e-23 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 5e-23 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 7e-23 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 9e-23 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-22 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-22 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-22 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-22 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-22 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 3e-22 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-22 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-22 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-22 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-22 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 4e-22 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-22 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 4e-22 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 5e-22 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 6e-22 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 7e-22 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 8e-22 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 9e-22 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 9e-22 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-21 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-21 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-21 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-21 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-21 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-21 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-21 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-21 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-21 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 4e-21 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 5e-21 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 5e-21 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 5e-21 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 6e-21 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 6e-21 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 7e-21 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 7e-21 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 8e-21 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-20 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-20 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-20 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-20 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-20 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-20 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-20 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-20 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-20 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-20 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-20 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-20 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-20 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-20 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-20 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 3e-20 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 3e-20 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-20 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 3e-20 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 3e-20 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-20 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-20 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 4e-20 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-20 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-20 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 4e-20 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 5e-20 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 5e-20 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 5e-20 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 6e-20 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 6e-20 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 6e-20 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 7e-20 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 8e-20 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 8e-20 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-19 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-19 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-19 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-19 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 3e-19 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-19 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-19 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-19 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 3e-19 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-19 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 4e-19 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 4e-19 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-19 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-19 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 5e-19 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 5e-19 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 5e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 6e-19 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 6e-19 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 7e-19 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 8e-19 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 9e-19 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-18 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-18 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-18 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-18 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-18 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-18 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-18 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-18 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-18 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-18 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-18 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-18 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 3e-18 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-18 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 4e-18 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 4e-18 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 5e-18 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 6e-18 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 7e-18 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 8e-18 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 8e-18 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 8e-18 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-17 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-17 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-17 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-17 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 1e-17 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-17 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-17 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-17 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-17 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-17 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-17 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-17 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-17 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-17 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-17 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-17 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 3e-17 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 3e-17 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 5e-17 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 6e-17 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 6e-17 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 6e-17 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 7e-17 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-17 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 8e-17 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-16 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-16 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-16 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-16 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-16 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-16 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-16 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 3e-16 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-16 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-16 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 5e-16 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 6e-16 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 6e-16 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 7e-16 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 7e-16 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 8e-16 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 8e-16 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 9e-16 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-15 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-15 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-15 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-15 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 1e-15 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-15 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-15 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-15 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-15 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-15 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-15 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-15 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-15 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-15 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-15 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 5e-15 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 5e-15 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 6e-15 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 8e-15 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 9e-15 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 9e-15 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 9e-15 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-14 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-14 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-14 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-14 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-14 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-14 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-14 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-14 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-14 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-14 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-14 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-14 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-14 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-14 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-14 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-14 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-14 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-14 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-14 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-14 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 4e-14 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-14 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-14 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 5e-14 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 7e-14 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 7e-14 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 7e-14 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 9e-14 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 1e-13 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 1e-13 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-13 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-13 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-13 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-13 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-13 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-13 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-13 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-13 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-13 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-13 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 4e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 4e-13 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-13 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-13 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 5e-13 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 5e-13 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 6e-13 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 6e-13 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-12 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 1e-12 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-12 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-12 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-12 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-12 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-12 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-12 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 3e-12 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 3e-12 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 4e-12 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 4e-12 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 5e-12 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 5e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 5e-12 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 6e-12 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 6e-12 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 7e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 9e-12 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-11 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-11 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-11 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-11 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-11 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-11 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-11 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-11 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-11 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-11 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-11 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 4e-11 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 5e-11 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 7e-11 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 7e-11 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-11 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 8e-11 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 8e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-10 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 1e-10 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-10 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 2e-10 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-10 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-10 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 5e-10 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 5e-10 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 5e-10 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 6e-10 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 6e-10 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 6e-10 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 7e-10 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 8e-10 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-09 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-09 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-09 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-09 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-09 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 4e-09 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 5e-09 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 5e-09 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 6e-09 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 9e-09 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 9e-09 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-08 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 1e-08 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 4e-08 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 4e-08 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 5e-08 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-08 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 8e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 8e-08 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 8e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-07 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-07 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-07 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-07 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-07 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 3e-07 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 4e-07 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 5e-07 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 5e-07 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 6e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 6e-07 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 6e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-07 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 8e-07 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 9e-07 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 9e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-06 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 2e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-06 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 3e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-06 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 4e-06 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 4e-06 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 4e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 7e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 8e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-05 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 1e-05 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 1e-05 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-05 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 2e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-05 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-05 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 3e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 4e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 4e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 4e-05 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 4e-05 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 5e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 8e-05 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 8e-05 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 9e-05 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 9e-05 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 9e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-04 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 1e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-04 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-04 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 2e-04 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-04 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 4e-04 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 4e-04 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 5e-04 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 6e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 7e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 8e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.001 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 0.001 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.001 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.001 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 0.001 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.001 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 0.001 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.002 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.003 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 0.003 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.004 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 453 bits (1167), Expect = e-153
Identities = 170/238 (71%), Positives = 193/238 (81%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IEFKNV+F YPSRPDV I + S+ P GKTVA+VG SG GKSTVVSL+ERFYDP +G +
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHS 219
LLD VDI+ L LRWLR QIGLV+QEP LF TI ENI YGKP+AT EVE AA AN H
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 220 FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 279
FI LP+GY T VGERG QLSGGQKQRIAIARA+L+NPKILLLDEATSALDA SE +VQE
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 280 ALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 337
ALDR M GRTT+V+AHRLSTIRN D +AV+Q GQVVE GTH+EL+A+ G YA L++ Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 404 bits (1041), Expect = e-135
Identities = 147/239 (61%), Positives = 194/239 (81%), Gaps = 1/239 (0%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE ++V F YPSRPDV + K +L I G++ ALVG+SG GKS+V++L+ERFYDPT+G++
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHG 864
++DG DIR LNL+ LR +IGLV QEP LF +I +NI YGK AT+ EV EAA+ AN+H
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 865 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 924
F+ +LP+ Y T VGERG QLSGGQKQRIAIARA+L+NP ILLLDEATSALDAESE ++QE
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 925 ALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
AL+R M+GRTT+++AHRLSTIR D I V+Q+G++VEQG+H EL+++ G Y++L++ Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 396 bits (1020), Expect = e-127
Identities = 195/575 (33%), Positives = 313/575 (54%), Gaps = 14/575 (2%)
Query: 409 LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFI 468
LR L ++ + +LS + +++ +I+ +E + +
Sbjct: 4 LRRLLKYLKYKLL-LLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLE-----LLLL 57
Query: 469 YIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARL 528
+ L V +Q Y S +G+ + +RR + +LR + +FD+ S + +RL
Sbjct: 58 LLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK--AKSGDLISRL 115
Query: 529 ATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLS 588
D V + ++ + ++ ++ L+ S ++ F + WR++L++L PLL L
Sbjct: 116 TNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARK 175
Query: 589 LKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTA 648
+ + +A + + E +S IR + AF A+++ L F + LR S
Sbjct: 176 SRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLE 235
Query: 649 GILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEI 708
+L + L+L G LV G T + + L+ + + + +
Sbjct: 236 ALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLL 295
Query: 709 IRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNL 768
R + +F LD + D PD G IE +V F+YP V KD +
Sbjct: 296 QRASAAAERLFELLDEEPEV-EDPPDPLKDT--IGSIEFENVSFSYP--GKKPVLKDISF 350
Query: 769 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQ 828
I G+ A+VG SGSGKS++I L+ R YDPT+G+++IDG DIR ++L SLR +IG+V Q
Sbjct: 351 SIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQ 410
Query: 829 EPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888
+P LF+ +I +NIA G+ AT+ E+ EA + AN H F++ LP+ Y T VGERGV LSGGQ
Sbjct: 411 DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQ 470
Query: 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGV 948
+QR+AIARA+L+NP IL+LDEATSALD E+E ++Q+AL++L++GRTT+++AHRLSTI+
Sbjct: 471 RQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNA 530
Query: 949 DCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
D I V+ +GRIVE+G+H EL+++ G Y+RL Q Q
Sbjct: 531 DRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQ 564
|
Length = 567 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 385 bits (991), Expect = e-122
Identities = 203/531 (38%), Positives = 302/531 (56%), Gaps = 6/531 (1%)
Query: 454 NPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGW 513
+ S + F F+ + A + A+ + Y + +GE + +RR + A ++ +
Sbjct: 50 SKDSSGLLNRYFAFLLVVALVLAL-GTAARFYLVTWLGERVVADIRRAVFAHLISLSPSF 108
Query: 514 FDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILG 573
FD+ S V +RL TD ++S I +S+ L+N + I+ FI +++ L+L
Sbjct: 109 FDKNR--SGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLL 166
Query: 574 TYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHE 633
PL++L ++ + ++ A AGE + IRTV AF ++ S F
Sbjct: 167 AVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGA 226
Query: 634 LRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVV 693
+ +R T +L I + + +LW G H V G + + + V+
Sbjct: 227 VEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVM 286
Query: 694 TANSVAETVSLAPEIIRGGESVGSVFSTLD-RSTRIDPDDPDAEPVETIRGEIELRHVDF 752
A S+ + E+ R + + L P P PV +RGEIE V+F
Sbjct: 287 VAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVP-LRGEIEFEQVNF 345
Query: 753 AYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR 812
AYP+RPD NL +R G++ ALVG SG+GKS++ L+ RFYDP +G++++DG D+R
Sbjct: 346 AYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLR 405
Query: 813 RLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNA 872
+L+ LR ++ LV Q+P LFAAS+ +NI YG+ AT+ EV AARAA+ H F+SALP
Sbjct: 406 QLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEG 465
Query: 873 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG 932
Y T +GERGV LSGGQ+QRIAIARA+LK+ ILLLDEATSALDAESE ++Q+ALE LM+G
Sbjct: 466 YDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKG 525
Query: 933 RTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
RTT+++AHRL+T+ D I V+ GRIV QG+H+EL+ G Y+RL +LQ
Sbjct: 526 RTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELI-AKGGLYARLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 379 bits (974), Expect = e-118
Identities = 188/589 (31%), Positives = 300/589 (50%), Gaps = 44/589 (7%)
Query: 409 LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVF--YYRNPASMERKTKEFV 466
RLL L+ +WP+ I + ++ + E+F +Y +
Sbjct: 150 FRLLGLSGRDWPWLISA------------FVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP 197
Query: 467 FIYIGA----GLYAVVAYLIQHY---FFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEH 519
A L ++ + + F+ + R+R + ++LR ++G+FDE +
Sbjct: 198 PALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDE--N 255
Query: 520 NSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLV 579
+ + +RL++D + +++ ++V+L+N+ LL + R++++ L PL+
Sbjct: 256 KTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVF 315
Query: 580 LAN-----FAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHEL 634
LA Q LS + +A AK + +A E +S +RTV +F A+ S F L
Sbjct: 316 LAEKVFGKRYQLLSEE-----LQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEAL 370
Query: 635 RVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVT 694
R++L + + L+L+YG LV G + ++ +
Sbjct: 371 EETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQL 430
Query: 695 ANSVAETVSLAPEIIRGGESVGS---VFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVD 751
+V + ++ ++VG+ VF LDR I A + G IE + V
Sbjct: 431 GEAVRVLSYVYSGMM---QAVGASEKVFEYLDRKPNIPLTGTLAPL--NLEGLIEFQDVS 485
Query: 752 FAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI 811
F+YP+RPDV V K + G+ ALVG SGSGKS+V AL++ Y PT G+V++DG +
Sbjct: 486 FSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPL 545
Query: 812 RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPN 871
+ + L ++ LV QEP LF+ S+ +NIAYG + E++ AA+AAN H F+ PN
Sbjct: 546 VQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPN 605
Query: 872 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR 931
Y T VGE+G QLSGGQKQRIAIARA+++ P +L+LDEATSALDAE E +LQE+ R
Sbjct: 606 GYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSR--A 663
Query: 932 GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 980
RT +L+AHRLST+ D I V++ G +VE G+H +L+ Y L+
Sbjct: 664 SRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQG-CYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 353 bits (909), Expect = e-115
Identities = 144/234 (61%), Positives = 178/234 (76%), Gaps = 1/234 (0%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+EFKNVTF YP ++ RD S+ PAG+TVA+VG SGSGKST+V+LI RFYD ++G +
Sbjct: 1 VEFKNVTFRYPGDGPPVL-RDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHS 219
L+D D++ L LR QIGLV+Q+ LF T+ ENI YG+P AT EVE AA AANAH
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 220 FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 279
FI LP GY T +GERGV+LSGGQ+QRIAIARA+LK+P IL+LDEATSALD SE +VQ
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 280 ALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASL 333
AL+RLM RTT V+AHRLSTI N D + V++ G++VE GTHEEL+A+ G YA L
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 355 bits (912), Expect = e-111
Identities = 185/580 (31%), Positives = 300/580 (51%), Gaps = 17/580 (2%)
Query: 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMI-EVFYYRNPASMERKTKEFV 466
F RL P ++ + +L T A ++ ++ + F R+ + + +
Sbjct: 2 FRRLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVI 61
Query: 467 FIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAA 526
+ + G + + Y S + + +R M +L V +FD + + +
Sbjct: 62 GLAVLRG----ICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDR--QPTGTLLS 115
Query: 527 RLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQ 586
R+ D+ V SA D V+++ +++ FIV W+++L+++ P+L +
Sbjct: 116 RITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVS 175
Query: 587 LSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL 646
L+ + + + + + +A E + R V F Q F + ++ +
Sbjct: 176 KRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTS 235
Query: 647 TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAP 706
I I+Q + A++L+ + G T ++ + ++
Sbjct: 236 AGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNA 295
Query: 707 EIIRGGESVGSVFSTLDRSTRIDPDDPDA--EPVETIRGEIELRHVDFAYPSRPDVVVFK 764
+ RG + S+F+ LD P + D +E RG++E R+V F YP R D
Sbjct: 296 PMQRGLAAAESLFTLLD-----SPPEKDTGTRAIERARGDVEFRNVTFRYPGR-DRPALD 349
Query: 765 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824
+L I G++ ALVG SGSGKS+++ LI RFY+P +G++++DG D+ L SLR ++
Sbjct: 350 SISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA 409
Query: 825 LVQQEPALFAASIFDNIAYGK-EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ 883
LV Q+ LF +I +NIAYG+ E A AE+ A AA FV LP TP+GE GV
Sbjct: 410 LVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVL 469
Query: 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLS 943
LSGGQ+QR+AIARA+LK+ IL+LDEATSALD ESE ++Q ALERLM+GRTT+++AHRLS
Sbjct: 470 LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLS 529
Query: 944 TIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
TI D I V+ DGRIVE+G+H+EL++R +G Y++L +Q
Sbjct: 530 TIEKADRIVVMDDGRIVERGTHNELLAR-NGLYAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 339 bits (871), Expect = e-110
Identities = 134/235 (57%), Positives = 178/235 (75%), Gaps = 2/235 (0%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+E ++V F YP V+ +D +L I AG++ ALVG SGSGKS+++ LI RFYD +G++
Sbjct: 1 VEFKNVTFRYPGDGPPVL-RDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHG 864
+IDG D+R L SLR +IGLV Q+ LF ++ +NIAYG+ GAT EV EAARAAN H
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 865 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 924
F+ LP Y T +GERGV+LSGGQ+QRIAIARA+LK+P IL+LDEATSALD ESE ++Q
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 925 ALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRL 979
ALERLM+ RTT ++AHRLSTI D I V++DG+IVE+G+H EL+++ G Y++L
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 343 bits (881), Expect = e-106
Identities = 155/320 (48%), Positives = 211/320 (65%), Gaps = 2/320 (0%)
Query: 19 ALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIK 78
V W + G G +F A++ S+G G + A +L+E+++
Sbjct: 257 VGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQ 316
Query: 79 QKPSIIQDPTNGRCLD-EVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGS 137
+P I + P + + L + G IEF+ V F+YP+RPD ++ G+TVA+VG S
Sbjct: 317 AEPDI-KAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPS 375
Query: 138 GSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENIL 197
G+GKST+ L+ RFYDP +G +LLD VD++ L LR ++ LV Q+P LFA +++ENI
Sbjct: 376 GAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIR 435
Query: 198 YGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257
YG+P+AT EVEAAA AA+AH FI+ LP GY T +GERGV LSGGQ+QRIAIARA+LK+
Sbjct: 436 YGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDA 495
Query: 258 KILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVET 317
ILLLDEATSALDA SE +VQ+AL+ LM GRTT+++AHRL+T+ D + V+ QG++V
Sbjct: 496 PILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQ 555
Query: 318 GTHEELIAKAGAYASLIRFQ 337
GTH ELIAK G YA L R Q
Sbjct: 556 GTHAELIAKGGLYARLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 324 bits (832), Expect = e-104
Identities = 133/238 (55%), Positives = 170/238 (71%), Gaps = 2/238 (0%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IEF+NVTF+Y P + +D S PAGK VA+VG SGSGKST++ L+ RFYD ++G +
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHS 219
L+D DI+ + L LR IG+V Q+ LF TI NI YG+P+AT EV AA AA H
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 220 FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 279
I P+GY T VGERG++LSGG+KQR+AIARA+LKNP ILLLDEATSALD +E +Q
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 280 ALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 337
AL + GRTT+V+AHRLSTI N D + V++ G++VE GTHEEL+AK G YA + + Q
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWKAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 334 bits (857), Expect = e-103
Identities = 149/329 (45%), Positives = 213/329 (64%), Gaps = 5/329 (1%)
Query: 10 TYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAA 69
++ + LV G + +G G I + + Q + + AA
Sbjct: 242 MLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAA 301
Query: 70 GYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGK 129
+L E++ ++P + P L + G+IEF+NV+FSYP + V+ +D S G+
Sbjct: 302 AERLFELLDEEPEVEDPPDP---LKDTIGSIEFENVSFSYPGKKPVL--KDISFSIEPGE 356
Query: 130 TVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA 189
VA+VG SGSGKST++ L+ R YDP +G +L+D +DI+ + L LR +IG+V+Q+P LF+
Sbjct: 357 KVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS 416
Query: 190 TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249
TI ENI G+P+AT E+E A ANAH FI LP+GY T VGERGV LSGGQ+QR+AI
Sbjct: 417 GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAI 476
Query: 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVI 309
ARA+L+NP IL+LDEATSALD +E+++Q+AL +L+ GRTT+++AHRLSTI+N D + V+
Sbjct: 477 ARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVL 536
Query: 310 QQGQVVETGTHEELIAKAGAYASLIRFQE 338
G++VE GTHEEL+AK G YA L + Q
Sbjct: 537 DNGRIVERGTHEELLAKGGLYARLYQAQG 565
|
Length = 567 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 320 bits (823), Expect = e-103
Identities = 118/231 (51%), Positives = 167/231 (72%), Gaps = 2/231 (0%)
Query: 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 157
G IEF+NV FSY + +D + G+TVA+VG +G+GK+T+++L+ RFYDP G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 158 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANA 217
+L+D +DI+ + + LR IG+V Q+ LF+ TI+ENI G+P AT EV AA A A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 218 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 277
H FI LPNGY T +GE G LS G++Q +AIARAML++PKIL+LDEATS +D +E ++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 278 QEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAG 328
QEAL++LM GRT++++AHRLSTI+N D + V+ G+++E GTH+EL+AK G
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 317 bits (814), Expect = e-101
Identities = 128/240 (53%), Positives = 174/240 (72%), Gaps = 5/240 (2%)
Query: 745 IELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
IE +V FAY P RP V KD + I AG+ A+VG SGSGKS+++ L+ RFYD ++G
Sbjct: 1 IEFENVTFAYDPGRP---VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS 57
Query: 804 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVH 863
++IDG+DIR + L SLR IG+V Q+ LF +I NI YG+ AT+ EV+EAA+AA +H
Sbjct: 58 ILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIH 117
Query: 864 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 923
+ P+ Y T VGERG++LSGG+KQR+AIARA+LKNP ILLLDEATSALD +E +Q
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 924 EALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
AL + +GRTT+++AHRLSTI D I V++DGRIVE+G+H EL+++ G Y+ + + Q
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWKAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 321 bits (824), Expect = 5e-97
Identities = 170/524 (32%), Positives = 281/524 (53%), Gaps = 16/524 (3%)
Query: 465 FVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLV 524
+ A L+ + L++ Y + +G+ L + +LR + +F E+ + +
Sbjct: 196 LAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYF--EKRSVGEI 253
Query: 525 AARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFA 584
+R+ + ++ + I ++ ++ L V F+ W+++L++L PL VL
Sbjct: 254 ISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLI 312
Query: 585 -----QQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQS 639
++ + K ++A+ + E + I TV A A+ + S + + L +
Sbjct: 313 FQPLLRRKTRKLIE-ESAEQQSFLV----ETIKGIETVKALAAEPRFRSQWDNRLAKQVN 367
Query: 640 QTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVA 699
+ A IL I S LILW+G LV +G T +++ ++ + +
Sbjct: 368 IGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPIT 427
Query: 700 ETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPD 759
L + + ++ + LD + D + ++GEIE +V F Y
Sbjct: 428 RLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPK-LQGEIEFENVSFRYGPDDP 486
Query: 760 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 819
V+ +D +L I G+ A+VG SGSGKS+++ L+ Y P G++++DG D+ ++L SL
Sbjct: 487 PVL-EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASL 545
Query: 820 RLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGE 879
R ++G V Q+P LF+ SI +NIA G AT+ E++EAA+ A H F+ LP Y TPVGE
Sbjct: 546 RRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGE 605
Query: 880 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVA 939
G LSGGQ+QR+A+ARA+L P ILLLDEATSALD E+E ++ + L ++++GRT +++A
Sbjct: 606 GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIA 665
Query: 940 HRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
HRLSTIR D I V+ G+IVEQGSH EL+++ G Y+RL Q Q
Sbjct: 666 HRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQQQ 708
|
Length = 709 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 315 bits (808), Expect = 4e-96
Identities = 152/327 (46%), Positives = 207/327 (63%), Gaps = 7/327 (2%)
Query: 13 IACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL-GAFSKGKAAGY 71
IA ++ A+V + A + G G FTA +A++ + +S +N+ +G AA
Sbjct: 247 IASLALAVVLFIALFQAQAGSLTAG-DFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAE 305
Query: 72 KLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTV 131
L ++ P +D T R ++ G++EF+NVTF YP R D S+ G+TV
Sbjct: 306 SLFTLLDSPPE--KD-TGTRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETV 361
Query: 132 AVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATT 191
A+VG SGSGKST+V+LI RFY+P++G +LLD D+ L LR Q+ LV+Q+ LF T
Sbjct: 362 ALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDT 421
Query: 192 ILENILYGKP-EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250
I NI YG+ +A AE+E A +AA A F+ LP G T +GE GV LSGGQ+QR+AIA
Sbjct: 422 IANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIA 481
Query: 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQ 310
RA+LK+ IL+LDEATSALD SE +VQ AL+RLM GRTT+V+AHRLSTI D + V+
Sbjct: 482 RALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMD 541
Query: 311 QGQVVETGTHEELIAKAGAYASLIRFQ 337
G++VE GTH EL+A+ G YA L Q
Sbjct: 542 DGRIVERGTHNELLARNGLYAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 311 bits (799), Expect = 8e-95
Identities = 149/327 (45%), Positives = 207/327 (63%), Gaps = 13/327 (3%)
Query: 17 SWALVF-WYAGVF--IRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGA-FSKGKAAGYK 72
S AL F YA F + + +T G T +FS+++ M +S +N+ A F +G AA
Sbjct: 260 SLALAFVLYAASFPSVMDTLTAG--TITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQT 317
Query: 73 LMEIIKQKPSIIQDPTNGRC-LDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTV 131
L I+ + Q+ G+ ++ G+IEF+NVTF+YP + +V R+ + PAGKTV
Sbjct: 318 LFAILDLE----QEKDEGKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTV 372
Query: 132 AVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATT 191
A+VG SGSGKST+ +L+ RFYD + G +LLD D++ L LR+Q+ LV+Q LF T
Sbjct: 373 ALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDT 432
Query: 192 ILENILYGKPEA-TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250
I NI Y + E + ++E AA A A FI + NG T +GE GV LSGGQ+QRIAIA
Sbjct: 433 IANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIA 492
Query: 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQ 310
RA+L++ IL+LDEATSALD SE +Q ALD L RT++V+AHRLSTI D + V++
Sbjct: 493 RALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVE 552
Query: 311 QGQVVETGTHEELIAKAGAYASLIRFQ 337
G++VE GTH EL+A+ G YA L + Q
Sbjct: 553 DGEIVERGTHAELLAQNGVYAQLHKMQ 579
|
Length = 582 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 313 bits (803), Expect = 6e-94
Identities = 140/320 (43%), Positives = 197/320 (61%), Gaps = 14/320 (4%)
Query: 20 LVFWYAG-VFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKG--KAAGY--KLM 74
LV +Y G + + V+ G + S ++ LG++ L G +A G K+
Sbjct: 401 LVLYYGGQLVLTGKVSSGN-----LVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVF 455
Query: 75 EIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVV 134
E + +KP+I T + G IEF++V+FSYP+RPDV + + + G+ VA+V
Sbjct: 456 EYLDRKPNI--PLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALV 513
Query: 135 GGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILE 194
G SGSGKSTV +L++ Y P G VLLD V + +L Q+ LV QEP LF+ ++ E
Sbjct: 514 GPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRE 573
Query: 195 NILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254
NI YG + E+ AAA AANAH FI PNGY T+VGE+G QLSGGQKQRIAIARA++
Sbjct: 574 NIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633
Query: 255 KNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQV 314
+ P++L+LDEATSALDA E ++QE R RT +++AHRLST+ D + V+++G V
Sbjct: 634 RKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSV 691
Query: 315 VETGTHEELIAKAGAYASLI 334
VE GTH++L+ G Y L+
Sbjct: 692 VEMGTHKQLMEDQGCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 309 bits (794), Expect = 6e-94
Identities = 130/269 (48%), Positives = 183/269 (68%), Gaps = 4/269 (1%)
Query: 84 IQDPTNGRCLDEVNGNIEFKNVTFSYP-SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKS 142
++DP L V G +EF +V+FSY SR V D S G+TVA+VG +G+GKS
Sbjct: 319 VRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGV---EDVSFEAKPGQTVAIVGPTGAGKS 375
Query: 143 TVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPE 202
T+++L++R +DP +G +L+D DI+T+ LR I +V Q+ LF +I +NI G+P+
Sbjct: 376 TLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPD 435
Query: 203 ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLL 262
AT E+ AAA A AH FI P+GY T VGERG QLSGG++QR+AIARA+LK+P IL+L
Sbjct: 436 ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILIL 495
Query: 263 DEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEE 322
DEATSALD +E+ V+ ALD LM GRTT ++AHRLST+RN D + V G+VVE+G+ +E
Sbjct: 496 DEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDE 555
Query: 323 LIAKAGAYASLIRFQEMVRNRDFANPSTR 351
L+A+ G +A+L+R Q M++ +
Sbjct: 556 LVARGGRFAALLRAQGMLQEDERRKQPAA 584
|
Length = 588 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 293 bits (753), Expect = 7e-93
Identities = 115/229 (50%), Positives = 170/229 (74%), Gaps = 2/229 (0%)
Query: 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
GEIE +V+F+Y V KD N I+ G++ A+VG +G+GK+++I L+ RFYDP G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 803 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANV 862
+++IDG DIR ++ KSLR IG+V Q+ LF+ +I +NI G+ AT+ EV+EAA+ A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 863 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 922
H F+ LPN Y T +GE G LS G++Q +AIARA+L++P IL+LDEATS +D E+E ++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 923 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971
QEALE+LM+GRT++++AHRLSTI+ D I V+ DG+I+E+G+H EL+++
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 308 bits (792), Expect = 2e-92
Identities = 144/323 (44%), Positives = 199/323 (61%), Gaps = 10/323 (3%)
Query: 20 LVFWYAGVF--IRNGVTDGG-KAFTAIFSAIVGGMSLGQSFSNLGA-FSKGKAAGYKLME 75
L+ W+ G + +T G AF + + ++ S L F + K A +L +
Sbjct: 393 LILWF-GAILVLEGELTLGQLVAFNMLAGYFISPIT---RLSQLWTDFQQAKVALERLGD 448
Query: 76 IIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVG 135
I+ P D T L ++ G IEF+NV+F Y ++ D S+ P G+ VA+VG
Sbjct: 449 ILDTPPEQEGDKTLIH-LPKLQGEIEFENVSFRYGPDDPPVL-EDLSLEIPPGEKVAIVG 506
Query: 136 GSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILEN 195
SGSGKST++ L+ Y P G +LLD VD+ + L LR Q+G V Q+P LF+ +I EN
Sbjct: 507 RSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIREN 566
Query: 196 ILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255
I G PEAT E+ AA A AH FI LP GY T VGE G LSGGQ+QR+A+ARA+L
Sbjct: 567 IALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS 626
Query: 256 NPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVV 315
PKILLLDEATSALD +E+I+ + L +++ GRT +++AHRLSTIR+ D + V+ QG++V
Sbjct: 627 KPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIV 686
Query: 316 ETGTHEELIAKAGAYASLIRFQE 338
E G+HEEL+A+ G YA L + QE
Sbjct: 687 EQGSHEELLAQGGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 297 bits (763), Expect = 2e-89
Identities = 122/265 (46%), Positives = 175/265 (66%), Gaps = 3/265 (1%)
Query: 719 FSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQAL 778
F ++ + D P A + ++G +E V F+Y + V +D + + GQ+ A+
Sbjct: 309 FFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGV--EDVSFEAKPGQTVAI 366
Query: 779 VGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIF 838
VG +G+GKS++I L++R +DP +G+++IDG DIR + SLR I +V Q+ LF SI
Sbjct: 367 VGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIE 426
Query: 839 DNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 898
DNI G+ AT+ E+ AA A H F+ P+ Y T VGERG QLSGG++QR+AIARA+
Sbjct: 427 DNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARAL 486
Query: 899 LKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGR 958
LK+P IL+LDEATSALD E+E ++ AL+ LM+GRTT ++AHRLST+R D I V +GR
Sbjct: 487 LKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGR 546
Query: 959 IVEQGSHSELVSRPDGAYSRLLQLQ 983
+VE GS ELV+R G ++ LL+ Q
Sbjct: 547 VVESGSFDELVAR-GGRFAALLRAQ 570
|
Length = 588 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 293 bits (751), Expect = 9e-83
Identities = 242/931 (25%), Positives = 422/931 (45%), Gaps = 167/931 (17%)
Query: 206 AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 265
+EV + H F++ LP+ Y T VG +LSGGQKQRI+IARA+++NPKIL+LDEA
Sbjct: 547 SEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEA 606
Query: 266 TSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQ---------- 313
TS+LD SE +VQ+ ++ L R T+++AHRLSTIR +T+ V+ +
Sbjct: 607 TSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDII 666
Query: 314 -------------------------------------VVETGTHEELIA-KAGAYASLIR 335
++E GTH+ L+ K G Y ++I
Sbjct: 667 GEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMIN 726
Query: 336 FQEMVRNRDFANPSTRRS--RSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVS 393
Q++ + N + + S +S+ S +G+ ++ + S S + + +S
Sbjct: 727 NQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSKHENESAS---NKKSCKMS 783
Query: 394 NAETDRKNPAPDGYFLRLLKLNAPEWPYSI---------------MGAIGSVLSGFIGPT 438
+ N FLR L P+ P ++ + A+ +++G + P
Sbjct: 784 DENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIALSILVAGGLYPV 843
Query: 439 FAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRV 498
FA++ A + + + A++E + ++ + + ++ +++Y+ +++GE + +
Sbjct: 844 FALLYAKYVSTLF--DFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTM 901
Query: 499 RRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFI 558
+R + IL E+ +FD+++H L++A + D +K+ + + I + + L S +
Sbjct: 902 KRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMV 961
Query: 559 VAFIVEWRVSLLILGTYPLLVLANFAQQLSLKG---------------FAGDTAKAHAKT 603
++F V+ ++ GTY + + FA + L FA ++ K
Sbjct: 962 MSFYFCPIVAAVLTGTY-FIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKD 1020
Query: 604 -SMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHAS 662
S + E N+ TV + ++ +L + R++L +L+G SQ A
Sbjct: 1021 PSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFI 1080
Query: 663 EALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTL 722
+ W+G L+ +G +K + T + + +SL + S + +
Sbjct: 1081 NSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLI 1140
Query: 723 DRSTRID-------------------------------PDDP---------DAEPVETIR 742
R + ID P+ P D++ I
Sbjct: 1141 IRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIV 1200
Query: 743 GE----------IELR--------HVDFAYPSRPDVVVFKDF------NLRIRAGQSQAL 778
GE + +R H+ F D+ +D+ N+ ++ +L
Sbjct: 1201 GETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260
Query: 779 VGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIF 838
GSG+ S + +GK+++DG DI NLK LR +V QEP LF SI+
Sbjct: 1261 TKEGGSGEDSTVF-------KNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIY 1313
Query: 839 DNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 898
+NI +GKE AT +V A + A + F+ +LPN Y T VG G LSGGQKQRIAIARA+
Sbjct: 1314 ENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARAL 1373
Query: 899 LKNPAILLLDEATSALDAESECVLQEALERL--MRGRTTVLVAHRLSTIRGVDCIGVVQD 956
L+ P ILLLDEATS+LD+ SE ++++ + + +T + +AHR+++I+ D I V +
Sbjct: 1374 LREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNN 1433
Query: 957 ----GRIVE-QGSHSELVSRPDGAYSRLLQL 982
G V+ G+H EL+S DG Y + ++L
Sbjct: 1434 PDRTGSFVQAHGTHEELLSVQDGVYKKYVKL 1464
|
Length = 1466 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 280 bits (719), Expect = 3e-82
Identities = 157/464 (33%), Positives = 239/464 (51%), Gaps = 54/464 (11%)
Query: 548 QNMTSLLTS-FIVAFI-VEWRVS----LLILGTYPL-LVLANFAQQLSLKGFAGDTAKAH 600
+T +L F+V F+ V + S +++G+ +L+ F + K ++
Sbjct: 255 SALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSA 314
Query: 601 AKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALH 660
A TS + E V+ I T+ A + + + + +L + + S F ++
Sbjct: 315 AATSFLV-ESVTGIETIKATATEPQFQNRWDRQL----AAYVAAS------FRVTNLGNI 363
Query: 661 ASE----------ALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIR 710
A + A++LW+G HLV G + +V N +A V+ P ++R
Sbjct: 364 AGQAIELIQKLTFAILLWFGAHLVIGG--------ALSPGQLVAFNMLAGRVT-QP-VLR 413
Query: 711 ----------GGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDV 760
G ++ + L+ T A P +RG I ++ F Y PD
Sbjct: 414 LAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPE--LRGAITFENIRFRY--APDS 469
Query: 761 -VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 819
V + NL I+ G+ +VG SGSGKS++ L++R Y P G+V++DG D+ + L
Sbjct: 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWL 529
Query: 820 RLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGE 879
R ++G+V QE LF+ SI DNIA GA V+ AA+ A H F+S LP Y T VGE
Sbjct: 530 RRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGE 589
Query: 880 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVA 939
+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE ++ + + RGRT +++A
Sbjct: 590 KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIA 649
Query: 940 HRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
HRLST+R D I V++ G+I E G H EL++ G Y+RL Q Q
Sbjct: 650 HRLSTVRACDRIIVLEKGQIAESGRHEELLALQ-GLYARLWQQQ 692
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 273 bits (699), Expect = 1e-81
Identities = 129/237 (54%), Positives = 165/237 (69%), Gaps = 4/237 (1%)
Query: 98 GNIEFKNVTFSY-PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 156
G + F NV+F+Y P RP I S P GKTVA+VG SG+GKST++ L+ RFYD N+
Sbjct: 261 GAVAFINVSFAYDPRRP---ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS 317
Query: 157 GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAAN 216
G + +D DI+ + + LR IG+V Q+ LF TI NI YG+P+AT EV AAA AA
Sbjct: 318 GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQ 377
Query: 217 AHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 276
H FI LP GY T VGERG++LSGG+KQR+AIAR +LKNP IL+LDEATSALD +E
Sbjct: 378 IHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQA 437
Query: 277 VQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASL 333
+Q AL + GRTT+V+AHRLSTI + D + V+ G++VE GTHEEL+A G YA +
Sbjct: 438 IQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 261 bits (668), Expect = 1e-80
Identities = 115/239 (48%), Positives = 158/239 (66%), Gaps = 3/239 (1%)
Query: 100 IEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
I F++V F Y +PD +I + S+ G+ V +VG SGSGKST+ LI+RFY P G
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 159 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAH 218
VL+D D+ WLR Q+G+V QE LF +I +NI P +M V AA A AH
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 278
FI+ LP GY T VGE+G LSGGQ+QRIAIARA++ NP+IL+ DEATSALD SE +
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 279 EALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 337
+ + GRT +++AHRLST++N D + V+++G++VE G+H+EL+A+ G YA L + Q
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQLQ 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 275 bits (706), Expect = 2e-80
Identities = 116/246 (47%), Positives = 163/246 (66%), Gaps = 3/246 (1%)
Query: 93 LDEVNGNIEFKNVTFSY-PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF 151
L E+ G I F+N+ F Y P P+V+ + ++ G+ + +VG SGSGKST+ L++R
Sbjct: 449 LPELRGAITFENIRFRYAPDSPEVL--SNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL 506
Query: 152 YDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAA 211
Y P G VL+D VD+ WLR Q+G+V QE LF+ +I +NI P A V A
Sbjct: 507 YTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHA 566
Query: 212 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271
A A AH FI+ LP GY+T+VGE+G LSGGQ+QRIAIARA++ NP+IL+ DEATSALD
Sbjct: 567 AKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDY 626
Query: 272 GSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYA 331
SE+++ + + GRT +++AHRLST+R D + V+++GQ+ E+G HEEL+A G YA
Sbjct: 627 ESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYA 686
Query: 332 SLIRFQ 337
L + Q
Sbjct: 687 RLWQQQ 692
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 258 bits (662), Expect = 7e-80
Identities = 113/221 (51%), Positives = 156/221 (70%)
Query: 94 DEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD 153
D + G ++F+NVTF+YP+RPD ++ +D S G+ A+VG SGSGKSTVV+L+E FY
Sbjct: 6 DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65
Query: 154 PNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAAS 213
P G VLLD I + ++L ++ LV QEP LFA ++ +NI YG + V+ AA
Sbjct: 66 PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQ 125
Query: 214 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 273
A+AHSFI+ L +GY T+VGE+G QLSGGQKQR+AIARA+++NP++L+LDEATSALDA S
Sbjct: 126 KAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185
Query: 274 ESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQV 314
E VQ+AL RT +V+AHRLST+ D + V+ G++
Sbjct: 186 EQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 258 bits (660), Expect = 2e-79
Identities = 119/240 (49%), Positives = 160/240 (66%), Gaps = 4/240 (1%)
Query: 745 IELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
I HV F Y +PD V+ + +LRI+ G+ +VG SGSGKS++ LI+RFY P G+
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 804 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVH 863
V++DG D+ + LR ++G+V QE LF SI DNIA G + V+EAA+ A H
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 864 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 923
F+S LP Y T VGE+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE +
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 924 EALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
+ + GRT +++AHRLST++ D I V++ GRIVEQGSH EL++ +G Y+ L QLQ
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQLQ 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 269 bits (689), Expect = 4e-79
Identities = 124/275 (45%), Positives = 182/275 (66%), Gaps = 6/275 (2%)
Query: 710 RGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLR 769
RG + ++F+ LD D E +G+IE R+V F YP + +V ++ N +
Sbjct: 310 RGMAACQTLFAILDLEQEKDEGKRVIERA---KGDIEFRNVTFTYPGK-EVPALRNINFK 365
Query: 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQE 829
I AG++ ALVG SGSGKS++ L+ RFYD G++++DG D+R L SLR ++ LV Q
Sbjct: 366 IPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQN 425
Query: 830 PALFAASIFDNIAYGKEGA-TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888
LF +I +NIAY + + ++ EAAR A F++ + N T +GE GV LSGGQ
Sbjct: 426 VHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQ 485
Query: 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGV 948
+QRIAIARA+L++ IL+LDEATSALD ESE +Q AL+ L + RT++++AHRLSTI
Sbjct: 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKA 545
Query: 949 DCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
D I VV+DG IVE+G+H+EL+++ +G Y++L ++Q
Sbjct: 546 DEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQ 579
|
Length = 582 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 254 bits (651), Expect = 2e-78
Identities = 115/220 (52%), Positives = 156/220 (70%)
Query: 740 TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP 799
++G ++ ++V FAYP+RPD +V +D + + G+ ALVG SGSGKS+V+AL+E FY P
Sbjct: 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP 66
Query: 800 TAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARA 859
G+V++DGK I + K L K+ LV QEP LFA S+ DNIAYG + + V EAA+
Sbjct: 67 QGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQK 126
Query: 860 ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 919
A+ H F+S L + Y T VGE+G QLSGGQKQR+AIARA+++NP +L+LDEATSALDAESE
Sbjct: 127 AHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE 186
Query: 920 CVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRI 959
+Q+AL RT +++AHRLST+ D I V+ GRI
Sbjct: 187 QQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 260 bits (667), Expect = 4e-77
Identities = 122/250 (48%), Positives = 168/250 (67%), Gaps = 4/250 (1%)
Query: 731 DDPDAEPVETIR-GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSV 789
D PDA P+ +R G + +V FAY P + + I G++ A+VG SG+GKS++
Sbjct: 248 DAPDAPPLWPVRLGAVAFINVSFAY--DPRRPILNGISFTIPLGKTVAIVGESGAGKSTI 305
Query: 790 IALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGAT 849
+ L+ RFYD +G + IDG+DIR + +SLR IG+V Q+ LF +I NI YG+ AT
Sbjct: 306 LRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDAT 365
Query: 850 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 909
EV AA AA +H F+ +LP Y T VGERG++LSGG+KQR+AIAR +LKNP IL+LDE
Sbjct: 366 AEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDE 425
Query: 910 ATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELV 969
ATSALD +E +Q AL + GRTT+++AHRLSTI D I V+ +GRIVE+G+H EL+
Sbjct: 426 ATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELL 485
Query: 970 SRPDGAYSRL 979
+ G Y+ +
Sbjct: 486 AA-GGLYAEM 494
|
Length = 497 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 248 bits (637), Expect = 5e-77
Identities = 96/214 (44%), Positives = 128/214 (59%), Gaps = 43/214 (20%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IEFKNV+FSYP RP + +D S+ G+ VA+VG SGSGKST++ L+ R YDP +G +
Sbjct: 1 IEFKNVSFSYPGRPKPV-LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHS 219
L+D VD++ L L LR I V Q+P LF+ TI ENI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 220 FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 279
LSGGQ+QRIAIARA+L++P IL+LDEATSALD +E+++ E
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 280 ALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQ 313
AL L G+T +V+AHRLSTIR+ D + V+ G+
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 241 bits (619), Expect = 2e-74
Identities = 97/214 (45%), Positives = 133/214 (62%), Gaps = 43/214 (20%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE ++V F+YP RP V KD +L I+ G+ A+VG SGSGKS+++ L+ R YDPT+G++
Sbjct: 1 IEFKNVSFSYPGRP-KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHG 864
+IDG D+R L+L+SLR I V Q+P LF+ +I +NI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 865 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 924
LSGGQ+QRIAIARA+L++P IL+LDEATSALD E+E ++ E
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 925 ALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGR 958
AL L +G+T +++AHRLSTIR D I V+ DGR
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 253 bits (647), Expect = 2e-73
Identities = 131/328 (39%), Positives = 195/328 (59%), Gaps = 9/328 (2%)
Query: 27 VFIRNGVTDGGK--AFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLME-IIKQKPSI 83
V + G G+ AF + ++G + F ++ K + +E + Q+
Sbjct: 263 VLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQR--- 319
Query: 84 IQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKST 143
++P + L V G +EF+++TF + + + D S AG+TVA+VG +G+GK+T
Sbjct: 320 -EEPADAPELPNVKGAVEFRHITFEFANSSQGV--FDVSFEAKAGQTVAIVGPTGAGKTT 376
Query: 144 VVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEA 203
+++L++R YDP G +L+D +DI T+ LR I V Q+ LF +I ENI G+ A
Sbjct: 377 LINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGA 436
Query: 204 TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLD 263
T EV AA AA AH FI NGY T VGERG +LSGG++QR+AIARA+LKN IL+LD
Sbjct: 437 TDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLD 496
Query: 264 EATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323
EATSALD +E+ V+ A+D L RTT ++AHRLST+RN D V + QG+++E G+ +EL
Sbjct: 497 EATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQEL 556
Query: 324 IAKAGAYASLIRFQEMVRNRDFANPSTR 351
I K G + L+R ++ N+ P +
Sbjct: 557 IQKDGRFYKLLRRSGLLTNQPATKPLRK 584
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 248 bits (634), Expect = 1e-71
Identities = 162/453 (35%), Positives = 253/453 (55%), Gaps = 27/453 (5%)
Query: 544 SVILQNMTSLLTSFI-------VAFIVEWRVSLLILGTYPLLVL-ANFAQQLSLKGFAGD 595
+ L+ M L +F+ AF ++WR+S++++ L +L A Q + G A
Sbjct: 128 GLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAV 187
Query: 596 TAKAHAKTSMIAGEGVSNIRTVAAFN---AQNKILSLFCHELRVPQSQTLRRSLTAGILF 652
H ++ + +SN+ V ++N A+ L F + L Q L A
Sbjct: 188 EHHYHNVFKHVS-DSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALAS--- 243
Query: 653 GISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFV----VLVVTANSVAETVSLAPEI 708
G+++ A S IL G LV KG + +VI F+ +L+ + ++ ++ E
Sbjct: 244 GLNRMASTISMMCILVIGTVLVIKGELSVGEVI-AFIGFANLLIGRLDQMSGFITQIFEA 302
Query: 709 IRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNL 768
E F L+ S + DA + ++G +E RH+ F + + V D +
Sbjct: 303 RAKLED----FFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGV--FDVSF 356
Query: 769 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQ 828
+AGQ+ A+VG +G+GK+++I L++R YDPT G+++IDG DI + +SLR I V Q
Sbjct: 357 EAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQ 416
Query: 829 EPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888
+ LF SI +NI G+EGAT+ EV EAA+AA H F+ N Y T VGERG +LSGG+
Sbjct: 417 DAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGE 476
Query: 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGV 948
+QR+AIARA+LKN IL+LDEATSALD E+E ++ A++ L + RTT ++AHRLST+R
Sbjct: 477 RQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNA 536
Query: 949 DCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 981
D + + GR++E+GS EL+ + DG + +LL+
Sbjct: 537 DLVLFLDQGRLIEKGSFQELIQK-DGRFYKLLR 568
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 250 bits (641), Expect = 2e-71
Identities = 138/421 (32%), Positives = 223/421 (52%), Gaps = 15/421 (3%)
Query: 557 FIVA-FIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIR 615
F++ I+ + + L PL++L Q L A ++ + A+ + + E +S +
Sbjct: 276 FLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLE 335
Query: 616 TVAAFNAQNKILSLF--CHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHL 673
T+ A NA+ + + + +S R L+ + +QF I+ GV+L
Sbjct: 336 TIKALNAEGRFQRRWEQTVAA-LARSGLKSRFLSN-LATNFAQFIQQLVSVAIVVVGVYL 393
Query: 674 VGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDR--STRIDPD 731
+ G T +I V+L + ++A LA + R ++ + +LD ++
Sbjct: 394 ISDGELTMGGLIAC-VML--SGRALAPLGQLAGLLTRYQQA-KTALQSLDELMQLPVE-R 448
Query: 732 DPDAEPV--ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSV 789
+ ++GEIE R+V FAYP + + + +L IR G+ A++G GSGKS++
Sbjct: 449 PEGTRFLHRPRLQGEIEFRNVSFAYPGQETPAL-DNVSLTIRPGEKVAIIGRIGSGKSTL 507
Query: 790 IALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGAT 849
+ L+ Y PT G V++DG DIR+++ LR IG V Q+P LF ++ DNIA G A
Sbjct: 508 LKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYAD 567
Query: 850 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 909
+ E++ AA A V FV P+ +GERG LSGGQ+Q +A+ARA+L++P ILLLDE
Sbjct: 568 DEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDE 627
Query: 910 ATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELV 969
TSA+D SE ++ L+R + G+T VLV HR S + VD I V+ +GRIV G +++
Sbjct: 628 PTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVL 687
Query: 970 S 970
Sbjct: 688 E 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 233 bits (596), Expect = 1e-70
Identities = 98/221 (44%), Positives = 140/221 (63%), Gaps = 1/221 (0%)
Query: 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
G IE R+V F+YP++ + + +L IRAG+ A++G GSGKS+++ L+ Y PT+G
Sbjct: 1 GRIEFRNVSFSYPNQEIPAL-DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 803 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANV 862
V++DG DIR+L+ LR IG V Q+ LF ++ DNI G A + ++ AA A V
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 863 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 922
FV+ PN +GERG LSGGQ+Q +A+ARA+L +P ILLLDE TSA+D SE L
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 923 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQG 963
+E L +L+ +T +++ HR S + VD I V+ GRIV G
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 229 bits (587), Expect = 2e-69
Identities = 96/221 (43%), Positives = 136/221 (61%), Gaps = 1/221 (0%)
Query: 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 157
G IEF+NV+FSYP++ + + S+ AG+ VA++G GSGKST++ L+ Y P +G
Sbjct: 1 GRIEFRNVSFSYPNQEIPAL-DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 158 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANA 217
VLLD DI+ L LR IG V Q+ LF T+ +NI G P A + AA A
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 218 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 277
F+ PNG Q+GERG LSGGQ+Q +A+ARA+L +P ILLLDE TSA+D SE +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 278 QEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETG 318
+E L +L+ +T +++ HR S + VD + V+ G++V G
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 243 bits (622), Expect = 1e-68
Identities = 140/502 (27%), Positives = 247/502 (49%), Gaps = 46/502 (9%)
Query: 502 MLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAF 561
L ILR V +F + + +A+R+ V ++ +++ + L+ ++
Sbjct: 233 FLWHILRLPVRFFAQRH--AGDIASRVQL-NDQVAEFLSGQLATTALDAVMLVFYALLML 289
Query: 562 IVEWRVSLLILGTYPLLVLANFA----QQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTV 617
+ + ++L+ + + VLA + + + D K +A G+ +I T+
Sbjct: 290 LYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTG----VAISGLQSIETL 345
Query: 618 AAFNAQNKILSLFCHELRVPQSQTL----RRSLTAGILFGISQFALHASEALILWYGVHL 673
A ++ S + Q++ L + IL + + ALIL G
Sbjct: 346 KASGLESDFFSRWAGY----QAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLR 401
Query: 674 VGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEI--IRGGESVGSVFSTLDR-----ST 726
V +G T ++ ++ V V + + G L+R
Sbjct: 402 VMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGD---------LNRLDDVLRN 452
Query: 727 RIDPDDPD-------AEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALV 779
+DP + +EP + G +ELR++ F Y S + + ++F+L ++ GQ ALV
Sbjct: 453 PVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVALV 511
Query: 780 GASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 839
G SGSGKS++ L+ Y P +G+++ DG + + L + +V Q+ LF ++ D
Sbjct: 512 GGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRD 571
Query: 840 NIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899
N+ +A++V A + A +H +++ P Y + E G LSGGQ+QR+ IARA++
Sbjct: 572 NLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV 631
Query: 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRI 959
+NP+IL+LDEATSALD E+E ++ + L R RG T ++VAHRLSTIR D I V++ G++
Sbjct: 632 RNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKV 689
Query: 960 VEQGSHSELVSRPDGAYSRLLQ 981
V++G+H EL + GAY+RL++
Sbjct: 690 VQRGTHEELWAVG-GAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 248 bits (634), Expect = 8e-68
Identities = 244/930 (26%), Positives = 422/930 (45%), Gaps = 103/930 (11%)
Query: 100 IEFKNVTFSYP-SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
I N TF++ P + FSI P G VAVVG G GKS+++S + D GH
Sbjct: 637 ITVHNATFTWARDLPPTLNGITFSI--PEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 694
Query: 159 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGK---PEATMAEVEAAASAA 215
V + + + V Q+ + ++ ENIL+GK + +EA A
Sbjct: 695 VHM-------------KGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLP 741
Query: 216 NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 275
+ + +LP+G T++GE+GV LSGGQKQR+++ARA+ N I L D+ SA+DA
Sbjct: 742 D----LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 797
Query: 276 IVQEAL---DRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYAS 332
+ E + + ++ +T ++V H +S + VD + V+ G++ E G+++EL+ + GA+A
Sbjct: 798 HIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAE 857
Query: 333 LIRF-----QEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGAD- 386
+R Q+ + + + +L + + + R LS S S D
Sbjct: 858 FLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQ 917
Query: 387 ----GRIEMVSNAETDRKNPA---PDGYFLRLLKLNAPEWPYSIMGAIGSVLSG-----F 434
G + AE + D ++L+ W Y M AIG ++ F
Sbjct: 918 SRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSV-YWDY--MKAIGLFITFLSIFLF 974
Query: 435 IGPTFAIVMACMIEVFYYRNPA--SMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGE 492
+ + + + + +P + T + +Y G+ A SI G
Sbjct: 975 VCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGI 1034
Query: 493 NLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTS 552
+ + + +L LR+ + +F+ S + R + + V S I I + + ++ +
Sbjct: 1035 QASRVLHQDLLHNKLRSPMSFFERTP--SGNLVNRFSKELDTVDSMIPPVIKMFMGSLFN 1092
Query: 553 LLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQL---------SLKGFAGDTAKAHAKT 603
++ + IV + +++I PL +L F Q+ L+ + +H
Sbjct: 1093 VIGALIVILLATPIAAVIIP---PLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNE 1149
Query: 604 SMIAGEGVSNIRTVAAFNAQNKILSLFCH--ELRVPQSQ-------TLRRSLTAGILFGI 654
+++ GVS IR AF Q + F H +L+V ++Q R L +
Sbjct: 1150 TLL---GVSVIR---AFEEQER----FIHQSDLKVDENQKAYYPSIVANRWLAVRLECVG 1199
Query: 655 SQFALHASEALILWYGVH-----LVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEII 709
+ L A AL H LVG VS +S + ++ +V +S ET +A E +
Sbjct: 1200 NCIVLFA--ALFAVISRHSLSAGLVGLSVS-YSLQVTFYLNWLVRMSSEMETNIVAVERL 1256
Query: 710 RGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDV-VVFKDFNL 768
+ + T P P RG +E R+ Y R D+ +V + N+
Sbjct: 1257 KEYSETEKEAPWQIQETA----PPSGWPP---RGRVEFRNYCLRY--REDLDLVLRHINV 1307
Query: 769 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQ 828
I G+ +VG +G+GKSS+ + R + G+++IDG +I ++ L LR KI ++ Q
Sbjct: 1308 TIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQ 1367
Query: 829 EPALFAASIFDNI-AYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 887
+P LF+ S+ N+ + + ++ EV A A++ FVSALP+ E G LS G
Sbjct: 1368 DPVLFSGSLRMNLDPFSQ--YSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVG 1425
Query: 888 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG 947
Q+Q + +ARA+L+ IL+LDEAT+A+D E++ ++Q + T + +AHRL+TI
Sbjct: 1426 QRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD 1485
Query: 948 VDCIGVVQDGRIVEQGSHSELVSRPDGAYS 977
+ V+ G + E G+ S L+ + YS
Sbjct: 1486 YTRVIVLDKGEVAEFGAPSNLLQQRGIFYS 1515
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 232 bits (593), Expect = 8e-65
Identities = 97/232 (41%), Positives = 141/232 (60%), Gaps = 1/232 (0%)
Query: 95 EVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP 154
+ G IEF+NV+F+YP + + + S+ G+ VA++G GSGKST++ L+ Y P
Sbjct: 459 RLQGEIEFRNVSFAYPGQETPAL-DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP 517
Query: 155 NAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASA 214
G VLLD VDI+ + LR IG V Q+P LF T+ +NI G P A E+ AA
Sbjct: 518 TEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAEL 577
Query: 215 ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274
A F+ P+G Q+GERG LSGGQ+Q +A+ARA+L++P ILLLDE TSA+D SE
Sbjct: 578 AGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSE 637
Query: 275 SIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326
++ L R + G+T V+V HR S + VD + V+ G++V G ++++
Sbjct: 638 ERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 1e-64
Identities = 107/239 (44%), Positives = 152/239 (63%), Gaps = 5/239 (2%)
Query: 98 GNIEFKNVTFSY-PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 156
G +E +N+TF Y P P +I +FS+ G+ VA+VGGSGSGKST+ L+ Y P +
Sbjct: 476 GYVELRNITFGYSPLEPPLI--ENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533
Query: 157 GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAAN 216
G +L D + + + L + + +V+Q+ LF T+ +N+ P A++ A A
Sbjct: 534 GEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAA 593
Query: 217 AHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 276
H IT P GY ++ E G LSGGQ+QR+ IARA+++NP IL+LDEATSALD +E I
Sbjct: 594 IHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKI 653
Query: 277 VQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 335
+ + L R G T ++VAHRLSTIR+ D + V+++G+VV+ GTHEEL A GAYA LIR
Sbjct: 654 IDDNLRRR--GCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 5e-64
Identities = 106/273 (38%), Positives = 158/273 (57%), Gaps = 3/273 (1%)
Query: 66 GKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFF 125
G+AA KL +++ + +E I +N++F YP + D ++
Sbjct: 287 GEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPAL--SDLNLTI 344
Query: 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEP 185
AG+ A+VG SG+GKST+++L+ F P G + ++ +D++ L R QI V+Q P
Sbjct: 345 KAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNP 404
Query: 186 ALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245
LFA TI ENIL +P+A+ E+ AA A F+ P+G T +GE G LSGGQ Q
Sbjct: 405 YLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQ 463
Query: 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDT 305
R+A+ARA+L +LLLDE T+ LDA +E I+ +AL L +T +V+ HRL + D
Sbjct: 464 RLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADR 523
Query: 306 VAVIQQGQVVETGTHEELIAKAGAYASLIRFQE 338
+ V+ G++VE GTHEEL K G YA+L++ QE
Sbjct: 524 IVVLDNGRLVEQGTHEELSEKQGLYANLLKQQE 556
|
Length = 559 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 225 bits (577), Expect = 6e-64
Identities = 105/267 (39%), Positives = 158/267 (59%), Gaps = 4/267 (1%)
Query: 717 SVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQ 776
+F+ L+ AE EI L ++ F YP D NL I+AGQ
Sbjct: 293 KLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK--PALSDLNLTIKAGQLT 350
Query: 777 ALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAAS 836
ALVGASG+GKS+++ L+ F PT G++ ++G D+R L+ ++ R +I V Q P LFA +
Sbjct: 351 ALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGT 410
Query: 837 IFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896
I +NI + A++ E++ A A + FV P+ T +GE G LSGGQ QR+A+AR
Sbjct: 411 IRENILLARPDASDEEIIAALDQAGLLEFV-PKPDGLDTVIGEGGAGLSGGQAQRLALAR 469
Query: 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 956
A+L ++LLLDE T+ LDAE+E ++ +AL+ L + +T +++ HRL D I V+ +
Sbjct: 470 ALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDN 529
Query: 957 GRIVEQGSHSELVSRPDGAYSRLLQLQ 983
GR+VEQG+H EL + G Y+ LL+ Q
Sbjct: 530 GRLVEQGTHEELSEK-QGLYANLLKQQ 555
|
Length = 559 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 224 bits (574), Expect = 8e-64
Identities = 149/555 (26%), Positives = 234/555 (42%), Gaps = 58/555 (10%)
Query: 427 IGSVLSGFIGPTFAIVMACM----IEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLI 482
L G +G I A + ++ E + + L A++ +L
Sbjct: 6 ALLALLGVLGALLIIAQAWLLARVVDGLISAGEPLAELLP-ALGALALVLLLRALLGWL- 63
Query: 483 QHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADR 542
Q + + +++R +L A+ W + S A LA + + R
Sbjct: 64 QERAAARAAAAVKSQLRERLLEAVAALGPRW---LQGRPSGELATLALEGVEALDGYFAR 120
Query: 543 ISVILQNMTSL-LTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHA 601
L + L F +W L++L T PL+ L K A
Sbjct: 121 YLPQLVLAVIVPLAILAAVFPQDWISGLILLLTAPLIP---IFMILIGWAAQAAARKQWA 177
Query: 602 KTSMIAG------EGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRS-LTAGILFGI 654
S ++G G+ ++ AQ + E R + LR + L++ +L
Sbjct: 178 ALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIRRSSEEYRERTMRVLRIAFLSSAVL--- 234
Query: 655 SQFALHASEALILWY-GVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEI---IR 710
+ S AL+ Y G L+ + + VL+ LAPE +R
Sbjct: 235 -ELFATLSVALVAVYIGFRLLAGDLDLATG----LFVLL-----------LAPEFYLPLR 278
Query: 711 -----------GGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPD 759
G + ++F+ LD + R +E V AYP R
Sbjct: 279 QLGAQYHARADGVAAAEALFAVLDAAPRPLAGKAPVTAAPAPS--LEFSGVSVAYPGRRP 336
Query: 760 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 819
+ + + + G+ ALVG SG+GKS+++ L+ F DPT G + ++G + + S
Sbjct: 337 AL--RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394
Query: 820 RLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGE 879
R +I V Q P LFA +I +NI + A++AE+ EA A + FV+ALP TP+GE
Sbjct: 395 RDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGE 454
Query: 880 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVA 939
G LSGGQ QR+A+ARA L++ +LLLDE T+ LDAE+E + EAL L +GRT +LV
Sbjct: 455 GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVT 514
Query: 940 HRLSTIRGVDCIGVV 954
HRL+ D I V+
Sbjct: 515 HRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 234 bits (598), Expect = 3e-63
Identities = 227/914 (24%), Positives = 405/914 (44%), Gaps = 91/914 (9%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
I KN FS+ S+ D ++ P G VA+VGG+G GK++++S + H
Sbjct: 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAML----GELSHA 670
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHS 219
+V I R + V Q +F T+ ENIL+G + A A H
Sbjct: 671 ETSSVVI--------RGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHD 722
Query: 220 FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-SESIVQ 278
+ LLP T++GERGV +SGGQKQR+++ARA+ N I + D+ SALDA + +
Sbjct: 723 -LDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFD 781
Query: 279 EALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQE 338
+ + G+T V+V ++L + +D + ++ +G + E GT EL S F++
Sbjct: 782 SCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAEL------SKSGSLFKK 835
Query: 339 MVRNRDFANPSTR-RSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAET 397
++ N + + + + T ++ + S RNL S G GR +V E
Sbjct: 836 LMENAGKMDATQEVNTNDENILKLGPTVTIDV---SERNLG-STKQGKRGRSVLVKQEER 891
Query: 398 DRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPAS 457
+ + + +R K W I+ L ++ V + +
Sbjct: 892 ETGIISWN-VLMRYNKAVGGLWVVMIL------LVCYLTTEVLRVSSSTWLSIWTDQSTP 944
Query: 458 MERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEE 517
++ +Y G V ++ + R+ ML +ILR + +F
Sbjct: 945 KSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFF--H 1002
Query: 518 EHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSF----IVAFIVEWRV-SLLIL 572
+ + V R + D D+ +A+ +++ + + LL++F V+ I W + LLIL
Sbjct: 1003 TNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLIL 1062
Query: 573 GTYPLLVLANFAQQL-----------------SLKGFAGDTA-KAHAKTSMIAGEGV-SN 613
L + ++++ +L G + A KA+ + + I G+ + +N
Sbjct: 1063 FYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNN 1122
Query: 614 IRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAG--ILFGISQFALHASEALILWYGV 671
IR A + N+ L++ R T G +++ + FA +L G
Sbjct: 1123 IRFTLANTSSNRWLTI--------------RLETLGGVMIWLTATFA-------VLRNGN 1161
Query: 672 HLVGKGVSTFSKVIKVFVVLVVTANS-VAETVSLAPEIIRGGESVGSVFSTLDRSTRIDP 730
G ++ ++ + + + T S V S A + E VG+ +T I
Sbjct: 1162 AENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIE 1221
Query: 731 DDPDAEPVET--IRGEIELRHVDFAYPSRPDVV-VFKDFNLRIRAGQSQALVGASGSGKS 787
++ PV RG I+ V Y RP + V + + + +VG +G+GKS
Sbjct: 1222 NN---RPVSGWPSRGSIKFEDVHLRY--RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKS 1276
Query: 788 SVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEG 847
S++ + R + G++MID D+ + L LR + ++ Q P LF+ ++ NI E
Sbjct: 1277 SMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSE- 1335
Query: 848 ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLL 907
+A++ EA A++ + P V E G S GQ+Q +++ARA+L+ IL+L
Sbjct: 1336 HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVL 1395
Query: 908 DEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 967
DEAT+++D ++ ++Q + + T +++AHRL+TI D I V+ G+++E S E
Sbjct: 1396 DEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQE 1455
Query: 968 LVSRPDGAYSRLLQ 981
L+SR A+ R++
Sbjct: 1456 LLSRDTSAFFRMVH 1469
|
Length = 1495 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 220 bits (563), Expect = 6e-62
Identities = 105/340 (30%), Positives = 176/340 (51%), Gaps = 16/340 (4%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
L G+ + L+ W A V G A A++ + ++F L
Sbjct: 243 GLSDAILLLIAGLLVI--GLLLWMAAQ-----VGAGALAQPGAALALLVIFAALEAFEPL 295
Query: 61 --GAFS-KGK--AAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDV 115
GAF G+ A+ +L +I+ QKP + +E +NV+F+YP +
Sbjct: 296 APGAFQHLGQVIASARRLNDILDQKPEV---TFPDEQTATTGQALELRNVSFTYPGQQ-T 351
Query: 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR 175
++F++ G+ VA++G SGSGKST++ L+ +DP G + L+ V+I +L + LR
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALR 411
Query: 176 DQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGER 235
+ I ++ Q LF+ T+ +N+ P+A+ E+ AA + P+G +T +GE
Sbjct: 412 ETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEG 471
Query: 236 GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAH 295
G +LSGG+++R+A+ARA+L + + LLDE T LD +E V L G+T ++V H
Sbjct: 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTH 531
Query: 296 RLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 335
RL + +D + V+ G+++E GTH EL+A G Y L +
Sbjct: 532 RLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQ 571
|
Length = 573 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 217 bits (556), Expect = 3e-61
Identities = 91/210 (43%), Positives = 125/210 (59%), Gaps = 2/210 (0%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+EF V+ +YP R + R S P G+ VA+VG SG+GKST+++L+ F DP G +
Sbjct: 322 LEFSGVSVAYPGRRPAL--RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHS 219
++ V + RDQI V Q P LFA TI ENI +P+A+ AE+ A A
Sbjct: 380 AVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDE 439
Query: 220 FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 279
F+ LP G T +GE G LSGGQ QR+A+ARA L++ +LLLDE T+ LDA +E+ V E
Sbjct: 440 FVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLE 499
Query: 280 ALDRLMVGRTTVVVAHRLSTIRNVDTVAVI 309
AL L GRT ++V HRL+ D + V+
Sbjct: 500 ALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 214 bits (547), Expect = 9e-60
Identities = 101/275 (36%), Positives = 163/275 (59%), Gaps = 4/275 (1%)
Query: 65 KGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIF 124
+G AA Y + + + +++D + + E G ++ F+YP D + +
Sbjct: 282 RGSAA-YSRIRAMLAEAPVVKDGS--EPVPEGRGELDVNIRQFTYPQT-DHPALENVNFT 337
Query: 125 FPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQE 184
G+ + + G +GSGKST++SLI+R +D + G + ++ + LQL R ++ +V+Q
Sbjct: 338 LKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQT 397
Query: 185 PALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244
P LF+ T+ NI G+P+AT E+E A A+ H I LP GY T+VGERGV LSGGQK
Sbjct: 398 PFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQK 457
Query: 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVD 304
QRI+IARA+L N +IL+LD+A SA+D +E + L + GRT ++ AHRLS +
Sbjct: 458 QRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEAS 517
Query: 305 TVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEM 339
+ V+Q G + + G H++L ++G Y + R+Q++
Sbjct: 518 EILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQL 552
|
Length = 569 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 3e-59
Identities = 125/324 (38%), Positives = 184/324 (56%), Gaps = 17/324 (5%)
Query: 19 ALVFWYAGVFIRNGVTDGGK--AFTAIFSAIVGGM-SLGQSFSNLGAFSKGKAAGYKLME 75
A +F A + G AF F + G + L + ++ A ++ +
Sbjct: 374 AALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAV----IPLWERAK 429
Query: 76 -IIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAV 133
I++ P + + T+ +++G IE VTF Y RPD +I D S+ G+ VA+
Sbjct: 430 PILEALPEVDEAKTDP---GKLSGAIEVDRVTFRY--RPDGPLILDDVSLQIEPGEFVAI 484
Query: 134 VGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTIL 193
VG SGSGKST++ L+ F P +G V D D+ L ++ +R Q+G+V Q L + +I
Sbjct: 485 VGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIF 544
Query: 194 ENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253
ENI G P T+ E AA A I +P G T + E G LSGGQ+QR+ IARA+
Sbjct: 545 ENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARAL 603
Query: 254 LKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQ 313
++ P+ILL DEATSALD +++IV E+L+RL V R +V+AHRLSTIRN D + V+ G+
Sbjct: 604 VRKPRILLFDEATSALDNRTQAIVSESLERLKVTR--IVIAHRLSTIRNADRIYVLDAGR 661
Query: 314 VVETGTHEELIAKAGAYASLIRFQ 337
VV+ GT++EL+A+ G +A L R Q
Sbjct: 662 VVQQGTYDELMAREGLFAQLARRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 1e-58
Identities = 83/225 (36%), Positives = 135/225 (60%), Gaps = 8/225 (3%)
Query: 98 GNIEFKNVTFSY-PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 156
G+IEFKNV+ Y P+ P V+ ++ S G+ V +VG +GSGKS+++ + R + ++
Sbjct: 1 GDIEFKNVSLRYRPNLPPVL--KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 157 GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP--EATMAEVEAAASA 214
G +L+D VDI + L LR +I ++ Q+P LF+ TI N+ P E + E+ A
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNL---DPFGEYSDEELWQALER 115
Query: 215 ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274
F+ LP G T V E G LS GQ+Q + +ARA+L+ KIL+LDEAT+++D ++
Sbjct: 116 VGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 175
Query: 275 SIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT 319
+++Q+ + T + +AHRL TI + D + V+ +G+VVE +
Sbjct: 176 ALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 211 bits (539), Expect = 2e-58
Identities = 85/215 (39%), Positives = 133/215 (61%), Gaps = 2/215 (0%)
Query: 767 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 826
N + AGQ ALVG SG+GK+S++ + F P G + I+G ++R L+ +S R + V
Sbjct: 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWV 428
Query: 827 QQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 886
Q P L ++ DN+ G A++ ++ +A A V F+ LP TP+G++ LS
Sbjct: 429 GQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSV 488
Query: 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR 946
GQ QR+A+ARA+L+ +LLLDE T++LDA SE ++ +AL R +TT++V H+L +
Sbjct: 489 GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA 548
Query: 947 GVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 981
D I V+QDG+IV+QG ++EL S+ G ++ LL
Sbjct: 549 QWDQIWVMQDGQIVQQGDYAEL-SQAGGLFATLLA 582
|
Length = 588 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 210 bits (538), Expect = 2e-58
Identities = 104/332 (31%), Positives = 169/332 (50%), Gaps = 20/332 (6%)
Query: 13 IACMSWALV--FWYAGVFIRNGVTDGGKAFTAIF-----SAIVGGMSLGQSFSNLGAFSK 65
I +V W A + G A A+F +A M + +F +LG
Sbjct: 252 ILANGLTVVLMLWLAAGGVGGNAQPG--ALIALFVFAALAAFEALMPVAGAFQHLGQVI- 308
Query: 66 GKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFF 125
A+ ++ EI +QKP + T+ ++ NV+F+YP +P ++ + S+
Sbjct: 309 --ASARRINEITEQKPEVTFPTTST--AAADQVSLTLNNVSFTYPDQPQPVL-KGLSLQI 363
Query: 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEP 185
AG+ VA++G +G GKST++ L+ R +DP G +LL+ I LR I +V+Q
Sbjct: 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRV 423
Query: 186 ALFATTILENILYGKPEATMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQ 243
LF+ T+ +N+L P A+ + LL G + +GE G QLSGG+
Sbjct: 424 HLFSATLRDNLLLAAPNASDEALIEVLQQVGLE---KLLEDDKGLNAWLGEGGRQLSGGE 480
Query: 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNV 303
++R+ IARA+L + +LLLDE T LDA +E + E L +T +++ HRL+ +
Sbjct: 481 QRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQF 540
Query: 304 DTVAVIQQGQVVETGTHEELIAKAGAYASLIR 335
D + V+ GQ++E GTH+EL+A+ G Y L +
Sbjct: 541 DRICVMDNGQIIEQGTHQELLAQQGRYYQLKQ 572
|
Length = 574 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 4e-58
Identities = 108/261 (41%), Positives = 162/261 (62%), Gaps = 15/261 (5%)
Query: 724 RSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGAS 782
+ DP + G IE+ V F Y RPD ++ D +L+I G+ A+VG S
Sbjct: 439 DEAKTDPGK--------LSGAIEVDRVTFRY--RPDGPLILDDVSLQIEPGEFVAIVGPS 488
Query: 783 GSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIA 842
GSGKS+++ L+ F P +G V DG+D+ L+++++R ++G+V Q L + SIF+NIA
Sbjct: 489 GSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIA 548
Query: 843 YGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 902
G T E EAAR A + + A+P T + E G LSGGQ+QR+ IARA+++ P
Sbjct: 549 -GGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP 607
Query: 903 AILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 962
ILL DEATSALD ++ ++ E+LERL T +++AHRLSTIR D I V+ GR+V+Q
Sbjct: 608 RILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQ 665
Query: 963 GSHSELVSRPDGAYSRLLQLQ 983
G++ EL++R G +++L + Q
Sbjct: 666 GTYDELMARE-GLFAQLARRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 209 bits (533), Expect = 8e-58
Identities = 86/250 (34%), Positives = 147/250 (58%), Gaps = 2/250 (0%)
Query: 733 PDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIAL 792
E T +ELR+V F YP + K+FNL + G+ A++G SGSGKS+++ L
Sbjct: 325 FPDEQTATTGQALELRNVSFTYPGQQ-TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQL 383
Query: 793 IERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAE 852
+ +DP G + ++G +I L+ ++LR I ++ Q LF+ ++ DN+ A++ E
Sbjct: 384 LAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEE 443
Query: 853 VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 912
+ A + + + + P+ T +GE G +LSGG+++R+A+ARA+L + + LLDE T
Sbjct: 444 LWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTE 503
Query: 913 ALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
LD +E + L G+T ++V HRL + +D I V+ +G+I+E+G+H+EL++
Sbjct: 504 GLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN- 562
Query: 973 DGAYSRLLQL 982
+G Y RL QL
Sbjct: 563 NGRYKRLYQL 572
|
Length = 573 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 205 bits (525), Expect = 1e-56
Identities = 77/216 (35%), Positives = 134/216 (62%), Gaps = 3/216 (1%)
Query: 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179
+F++ PAG+ +A+VG SG+GK+++++ + F P G + ++ ++++ L R +
Sbjct: 370 NFTL--PAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLS 426
Query: 180 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQL 239
V Q P L T+ +N+L G P+A+ +++ A A F+ LLP G T +G++ L
Sbjct: 427 WVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGL 486
Query: 240 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLST 299
S GQ QR+A+ARA+L+ ++LLLDE T++LDA SE +V +AL+ +TT++V H+L
Sbjct: 487 SVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLED 546
Query: 300 IRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 335
+ D + V+Q GQ+V+ G + EL G +A+L+
Sbjct: 547 LAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLA 582
|
Length = 588 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 7e-56
Identities = 99/248 (39%), Positives = 149/248 (60%), Gaps = 2/248 (0%)
Query: 736 EPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIER 795
EPV RGE+++ F YP D ++ N ++ GQ + G +GSGKS++++LI+R
Sbjct: 305 EPVPEGRGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQR 363
Query: 796 FYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVE 855
+D + G + + +L L S R ++ +V Q P LF+ ++ +NIA G+ AT+ E+
Sbjct: 364 HFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEH 423
Query: 856 AARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 915
AR A+VH + LP Y T VGERGV LSGGQKQRI+IARA+L N IL+LD+A SA+D
Sbjct: 424 VARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVD 483
Query: 916 AESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGA 975
+E + L + GRT ++ AHRLS + I V+Q G I ++G+H +L + G
Sbjct: 484 GRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQS-GW 542
Query: 976 YSRLLQLQ 983
Y + + Q
Sbjct: 543 YRDMYRYQ 550
|
Length = 569 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 7e-56
Identities = 79/222 (35%), Positives = 132/222 (59%), Gaps = 2/222 (0%)
Query: 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
G+IE ++V Y V+ K+ + I+ G+ +VG +GSGKSS++ + R + ++G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVL-KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG 59
Query: 803 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANV 862
++IDG DI ++ L LR +I ++ Q+P LF+ +I N+ E ++ E+ +A +
Sbjct: 60 SILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGL 118
Query: 863 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 922
FV +LP T V E G LS GQ+Q + +ARA+L+ IL+LDEAT+++D E++ ++
Sbjct: 119 KEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI 178
Query: 923 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGS 964
Q+ + + T + +AHRL TI D I V+ GR+VE S
Sbjct: 179 QKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 2e-55
Identities = 135/528 (25%), Positives = 255/528 (48%), Gaps = 43/528 (8%)
Query: 470 IGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLA 529
I A + + IQ + +++G+ L+ + + + + +F +V+ R
Sbjct: 203 IIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFF-STRRTGEIVS-RF- 259
Query: 530 TDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSL 589
TDA+ + A+A I + +M L+ + + LL L + P+ + + +
Sbjct: 260 TDASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTF 319
Query: 590 KGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ----NKILSLFCH----ELRVPQSQT 641
D +A+A + E ++ I T+ + ++ +KI S F + ++
Sbjct: 320 NKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQ 379
Query: 642 LRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAET 701
++++ A ++ ILW G +LV +G T ++I +L +
Sbjct: 380 GQQAIKAVTKLILNVV--------ILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENI 431
Query: 702 VSLAPEI-------IRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAY 754
++L P++ R E V V S + + + G+I + V ++Y
Sbjct: 432 INLQPKLQAARVANNRLNE-VYLVDSEFINKKKRTE-------LNNLNGDIVINDVSYSY 483
Query: 755 PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL 814
+++ D +L I+ +VG SGSGKS++ L+ F+ +G+++++G ++ +
Sbjct: 484 GYGSNIL--SDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI 541
Query: 815 NLKSLRLKIGLVQQEPALFAASIFDNIAYG-KEGATEAEVVEAARAANVHGFVSALPNAY 873
+ +LR I + QEP +F+ SI +N+ G KE ++ E+ A A + + +P Y
Sbjct: 542 DRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGY 601
Query: 874 KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL--MR 931
+T + E G +SGGQKQRIA+ARA+L + +L+LDE+TS LD +E ++ + L ++
Sbjct: 602 QTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITE---KKIVNNLLNLQ 658
Query: 932 GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRL 979
+T + VAHRLS + D I V+ G+I+EQGSH EL+ R +G Y+ L
Sbjct: 659 DKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR-NGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 200 bits (512), Expect = 5e-55
Identities = 85/249 (34%), Positives = 146/249 (58%), Gaps = 3/249 (1%)
Query: 733 PDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIAL 792
P + + L +V F YP +P V K +L+I+AG+ AL+G +G GKS+++ L
Sbjct: 327 PTTSTAAADQVSLTLNNVSFTYPDQPQPV-LKGLSLQIKAGEKVALLGRTGCGKSTLLQL 385
Query: 793 IERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAE 852
+ R +DP G+++++G+ I + +LR I +V Q LF+A++ DN+ A++
Sbjct: 386 LTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEA 445
Query: 853 VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 912
++E + + + +GE G QLSGG+++R+ IARA+L + +LLLDE T
Sbjct: 446 LIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTE 504
Query: 913 ALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
LDAE+E + E L + +T +++ HRL+ + D I V+ +G+I+EQG+H EL+++
Sbjct: 505 GLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ- 563
Query: 973 DGAYSRLLQ 981
G Y +L Q
Sbjct: 564 QGRYYQLKQ 572
|
Length = 574 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 2e-53
Identities = 129/383 (33%), Positives = 191/383 (49%), Gaps = 65/383 (16%)
Query: 19 ALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIK 78
+ +W+ IR G ++F+ + G G+ S G K + K +I
Sbjct: 1082 SFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLII 1141
Query: 79 QKPSI-IQDPTNGRCLD--EVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVG 135
+K +I ++D R + ++ G IE +V F Y SRP+V I++D + + KT A+VG
Sbjct: 1142 RKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVG 1201
Query: 136 GSGSGKSTVVSLIERFYD-PNAGHVLLDN------------------------------- 163
+GSGKSTV+SL+ RFYD N H++ N
Sbjct: 1202 ETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLT 1261
Query: 164 ----------------------VDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP 201
VDI L+ LR+ +V+QEP LF +I ENI +GK
Sbjct: 1262 KEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE 1321
Query: 202 EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILL 261
+AT +V+ A A FI LPN Y T VG G LSGGQKQRIAIARA+L+ PKILL
Sbjct: 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILL 1381
Query: 262 LDEATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIRNVDTVAVI----QQGQVV 315
LDEATS+LD+ SE ++++ + + +T + +AHR+++I+ D + V + G V
Sbjct: 1382 LDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFV 1441
Query: 316 ET-GTHEELI-AKAGAYASLIRF 336
+ GTHEEL+ + G Y ++
Sbjct: 1442 QAHGTHEELLSVQDGVYKKYVKL 1464
|
Length = 1466 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 2e-52
Identities = 108/327 (33%), Positives = 169/327 (51%), Gaps = 16/327 (4%)
Query: 639 SQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSV 698
S S AG+L +S++ ++L+L G +L G T +I A S+
Sbjct: 215 SAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMI---------AGSI 265
Query: 699 AETVSLAP--EIIRGGESVGSVFSTLDRSTRI---DPDDPDAEPVETIRGEIELRHVDFA 753
+LAP I G + R + P A P+ G + + +V
Sbjct: 266 LVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIV 325
Query: 754 YPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR 813
P + + ++AG++ A++G SGSGKS++ LI + PT+G V +DG D+++
Sbjct: 326 PPG-GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQ 384
Query: 814 LNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAY 873
+ ++ IG + Q+ LF ++ +NIA E A +++EAA+ A VH + LP+ Y
Sbjct: 385 WDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGY 444
Query: 874 KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL-MRG 932
T +G G LSGGQ+QRIA+ARA+ +P +++LDE S LD E E L A++ L RG
Sbjct: 445 DTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARG 504
Query: 933 RTTVLVAHRLSTIRGVDCIGVVQDGRI 959
T V++ HR S + VD I V+QDGRI
Sbjct: 505 ITVVVITHRPSLLGCVDKILVLQDGRI 531
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 194 bits (496), Expect = 5e-52
Identities = 96/244 (39%), Positives = 147/244 (60%), Gaps = 6/244 (2%)
Query: 93 LDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY 152
L+ +NG+I +V++SY +++ D S+ +VG SGSGKST+ L+ F+
Sbjct: 467 LNNLNGDIVINDVSYSYGYGSNIL--SDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF 524
Query: 153 DPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG-KPEATMAEVEAA 211
+G +LL+ +K + LR I + QEP +F+ +ILEN+L G K + E+ AA
Sbjct: 525 QARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAA 584
Query: 212 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271
A I +P GY T++ E G +SGGQKQRIA+ARA+L + K+L+LDE+TS LD
Sbjct: 585 CEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDT 644
Query: 272 GSE-SIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAY 330
+E IV L+ + +T + VAHRLS + D + V+ G+++E G+H+EL+ + G Y
Sbjct: 645 ITEKKIVNNLLN--LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFY 702
Query: 331 ASLI 334
ASLI
Sbjct: 703 ASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 5e-52
Identities = 94/241 (39%), Positives = 147/241 (60%), Gaps = 5/241 (2%)
Query: 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 157
G I+ NV+F+Y R D ++ ++ ++ P+ VA+VG +GSGKST+ SL+ +Y G
Sbjct: 339 GRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEG 396
Query: 158 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANA 217
+ LD + +L LR + +V Q+P + A T L N+ G+ + + +V A
Sbjct: 397 EIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQL 455
Query: 218 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 277
LP+G T +GE+G LS GQKQ +A+AR +++ P+IL+LDEAT+ +D+G+E +
Sbjct: 456 AELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI 515
Query: 278 QEALDRLMVGRTT-VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRF 336
Q+AL + TT VV+AHRLSTI DT+ V+ +GQ VE GTH++L+A G Y + +
Sbjct: 516 QQAL-AAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQL 574
Query: 337 Q 337
Q
Sbjct: 575 Q 575
|
Length = 592 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 5e-51
Identities = 96/252 (38%), Positives = 158/252 (62%), Gaps = 8/252 (3%)
Query: 733 PDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIAL 792
D P+++ G I++ +V FAY R D +V ++ NL + + ALVG +GSGKS++ +L
Sbjct: 331 NDDRPLQS--GRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASL 386
Query: 793 IERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAE 852
+ +Y T G++ +DG+ + L+ LR + +VQQ+P + A + N+ G++ +E +
Sbjct: 387 LMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRD-ISEEQ 445
Query: 853 VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 912
V +A + +LP+ TP+GE+G LS GQKQ +A+AR +++ P IL+LDEAT+
Sbjct: 446 VWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATA 505
Query: 913 ALDAESECVLQEALERLMRGRTT-VLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971
+D+ +E +Q+AL +R TT V++AHRLSTI D I V+ G+ VEQG+H +L++
Sbjct: 506 NIDSGTEQAIQQAL-AAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA 564
Query: 972 PDGAYSRLLQLQ 983
G Y ++ QLQ
Sbjct: 565 -QGRYWQMYQLQ 575
|
Length = 592 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 184 bits (470), Expect = 2e-49
Identities = 94/238 (39%), Positives = 140/238 (58%), Gaps = 5/238 (2%)
Query: 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 801
+G + + + A P + ++ K + ++AG++ ++G SGSGKS++ L+ + PT+
Sbjct: 332 QGALSVERLTAAPPGQKKPIL-KGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS 390
Query: 802 GKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAAN 861
G V +DG D+R+ + + L IG + Q+ LF +I +NIA E A +V+EAAR A
Sbjct: 391 GSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAG 450
Query: 862 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 921
VH + LP Y T +GE G LSGGQ+QRIA+ARA+ +P +++LDE S LD+E E
Sbjct: 451 VHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAA 510
Query: 922 LQEALERL-MRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSEL---VSRPDGA 975
L A+ RG T V++AHR S + VD I V+QDGRI G E+ V RP
Sbjct: 511 LAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAKVLRPPPR 568
|
Length = 580 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 6e-47
Identities = 101/288 (35%), Positives = 145/288 (50%), Gaps = 9/288 (3%)
Query: 43 IFSAIVGGMSLG---QSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGN 99
I +I+ G +L + FS + A +L E++ PS L E G+
Sbjct: 261 IAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPS----RDPAMPLPEPEGH 316
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+ +NVT P R S AG+ +A++G SGSGKST+ LI + P +G V
Sbjct: 317 LSVENVTIVPPG-GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV 375
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHS 219
LD D+K IG + Q+ LF T+ ENI A ++ AA A H
Sbjct: 376 RLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHE 435
Query: 220 FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 279
I LP+GY T +G G LSGGQ+QRIA+ARA+ +PK+++LDE S LD E +
Sbjct: 436 LILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALAN 495
Query: 280 ALDRLMV-GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326
A+ L G T VV+ HR S + VD + V+Q G++ G +E++AK
Sbjct: 496 AIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 163 bits (416), Expect = 2e-46
Identities = 71/216 (32%), Positives = 106/216 (49%), Gaps = 44/216 (20%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E +NV+F YP ++ R+ S G+++A++G SGSGKST+ LI P +G V
Sbjct: 1 LEVENVSFRYPGAEPPVL-RNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHS 219
LD DI L D +G + Q+ LF+ +I ENIL
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENIL---------------------- 97
Query: 220 FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 279
SGGQ+QR+ +ARA+ NP+IL+LDE S LD E + +
Sbjct: 98 --------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137
Query: 280 ALDRL-MVGRTTVVVAHRLSTIRNVDTVAVIQQGQV 314
A+ L G T +V+AHR T+ + D + V++ G+V
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 165 bits (421), Expect = 2e-46
Identities = 86/244 (35%), Positives = 128/244 (52%), Gaps = 37/244 (15%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----P 799
IELR ++ Y D KD +L I G+ AL+G SG GKS+++ L+ R D P
Sbjct: 1 IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 800 TAGKVMIDGKDIR--RLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-------KEGATE 850
G+V++DGKDI +++ LR ++G+V Q+P F SI+DN+AYG + +
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 851 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 910
V EA R A + V +A LSGGQ+QR+ +ARA+ P +LLLDE
Sbjct: 118 ERVEEALRKAALWDEVKDRLHAL---------GLSGGQQQRLCLARALANEPEVLLLDEP 168
Query: 911 TSALDAESECVLQEALERLMRGRTTVLVAH------RLSTIRGVDCIGVVQDGRIVEQGS 964
TSALD S ++E + L + T V+V H R++ D + +GR+VE G
Sbjct: 169 TSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVA-----DRTAFLLNGRLVEFGP 223
Query: 965 HSEL 968
++
Sbjct: 224 TEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 3e-46
Identities = 93/303 (30%), Positives = 154/303 (50%), Gaps = 11/303 (3%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
A LG + ++ L A V DG A + ++ ++ ++F+ L
Sbjct: 233 AAAATALGA--ALTLLAAGLAVLGALWAGGPAVADGRLAPVTLAVLVLLPLAAFEAFAAL 290
Query: 61 GA----FSKGKAAGYKLMEIIKQKP--SIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPD 114
A ++ +AA +++E++ + P G +E ++++ YP P
Sbjct: 291 PAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGKPT-LELRDLSAGYPGAPP 349
Query: 115 VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL 174
V S+ P G+ VA++G SGSGKST+++ + DP G V LD V + +L +
Sbjct: 350 V--LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEV 407
Query: 175 RDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGE 234
R ++ + Q+ LF TT+ EN+ +P+AT E+ AA ++ LP+G T +GE
Sbjct: 408 RRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGE 467
Query: 235 RGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVA 294
G +LSGG++QR+A+ARA+L + ILLLDE T LDA + + E L + GRT V++
Sbjct: 468 GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLIT 527
Query: 295 HRL 297
H L
Sbjct: 528 HHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 5e-46
Identities = 90/302 (29%), Positives = 147/302 (48%), Gaps = 5/302 (1%)
Query: 643 RRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETV 702
R + + ++ A + LW G V G + V V+L + A +
Sbjct: 232 RAAAATALGAALTLLAAGLAVLGALWAGGPAVADGRLA-PVTLAVLVLLPLAAFEAFAAL 290
Query: 703 SLAPE-IIRGGESVGSVFSTLD-RSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDV 760
A + + R + + LD + P A V + +ELR + YP
Sbjct: 291 PAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYP--GAP 348
Query: 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLR 820
V +L + G+ A++G SGSGKS+++A + DP G+V +DG + L+ +R
Sbjct: 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVR 408
Query: 821 LKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGER 880
++ + Q+ LF ++ +N+ + AT+ E+ A + ++ ALP+ T +GE
Sbjct: 409 RRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEG 468
Query: 881 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH 940
G +LSGG++QR+A+ARA+L + ILLLDE T LDAE+ L E L + GRT VL+ H
Sbjct: 469 GARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITH 528
Query: 941 RL 942
L
Sbjct: 529 HL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 1e-45
Identities = 91/242 (37%), Positives = 134/242 (55%), Gaps = 24/242 (9%)
Query: 745 IELRHVDFAYPSR--PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
IEL +V + V D +L I G+ ++G SG+GKS+++ LI PT+G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 803 KVMIDGKDIRRLNLKSLRL---KIGLVQQEPALFAA-SIFDNIAYGKE--GATEAEVVEA 856
V +DG+D+ L+ LR KIG++ Q L ++ ++F+N+A+ E G +AE+
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEI--K 119
Query: 857 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 916
R A + V A + P QLSGGQKQR+AIARA+ NP ILL DEATSALD
Sbjct: 120 QRVAELLELVGLSDKADRYPA-----QLSGGQKQRVAIARALANNPKILLCDEATSALDP 174
Query: 917 ESECVLQEALERLMR-----GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVS 970
E+ Q LE L G T VL+ H + ++ + D + V+ GR+VE+G+ SE+ +
Sbjct: 175 ETT---QSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231
Query: 971 RP 972
P
Sbjct: 232 NP 233
|
Length = 339 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 2e-45
Identities = 100/292 (34%), Positives = 156/292 (53%), Gaps = 17/292 (5%)
Query: 43 IFSAIVGGMSLG---QSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGN 99
I +I+ G +L + +N F + + +L E++ + P+ L G
Sbjct: 279 IAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPA--AAER--MPLPAPQGA 334
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+ + +T + P + I+ + S AG+ + ++G SGSGKST+ L+ + P +G V
Sbjct: 335 LSVERLTAAPPGQKKPIL-KGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSV 393
Query: 160 LLDNVDIKTLQLRWLRDQ----IGLVNQEPALFATTILENILYGKPEATMAEVEAAASAA 215
LD D++ +W R+Q IG + Q+ LF TI ENI EA +V AA A
Sbjct: 394 RLDGADLR----QWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLA 449
Query: 216 NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 275
H I LP GY T++GE G LSGGQ+QRIA+ARA+ +P +++LDE S LD+ E+
Sbjct: 450 GVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEA 509
Query: 276 IVQEALDRLMV-GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326
+ A+ G T VV+AHR S + +VD + V+Q G++ G EE++AK
Sbjct: 510 ALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561
|
Length = 580 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 1e-44
Identities = 73/216 (33%), Positives = 109/216 (50%), Gaps = 44/216 (20%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+E+ +V F YP + V ++ + I G+S A++G SGSGKS++ LI PT+G+V
Sbjct: 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHG 864
+DG DI + + L +G + Q+ LF+ SI +NI
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI----------------------- 96
Query: 865 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 924
LSGGQ+QR+ +ARA+ NP IL+LDE S LD E E L +
Sbjct: 97 -------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137
Query: 925 ALERL-MRGRTTVLVAHRLSTIRGVDCIGVVQDGRI 959
A+ L G T +++AHR T+ D I V++DGR+
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 7e-44
Identities = 86/236 (36%), Positives = 129/236 (54%), Gaps = 14/236 (5%)
Query: 100 IEFKNVTFSYPSR--PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 157
IE +NV+ ++ V D S+ P G+ ++G SG+GKST++ LI P +G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 158 HVLLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAAS 213
V +D D+ L +LR LR +IG++ Q L ++ T+ EN+ + A + + E
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 214 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 273
A + G S + QLSGGQKQR+AIARA+ NPKILL DEATSALD +
Sbjct: 122 VAELLELV-----GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPET 176
Query: 274 ESIVQEALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 326
+ E L + +G T V++ H + ++ + D VAV+ QG++VE GT E+ A
Sbjct: 177 TQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFAN 232
|
Length = 339 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 1e-43
Identities = 83/241 (34%), Positives = 128/241 (53%), Gaps = 23/241 (9%)
Query: 745 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
IEL++V + V KD +L + G+ ++G SG+GKS++I I PT+G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 804 VMIDGKDIRRLNLKSLRL---KIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARA 859
V++DG D+ L+ K LR +IG++ Q L ++ ++F+N+A E A + R
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 860 ANVHGFV--SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 917
+ V +AY QLSGGQKQR+ IARA+ NP +LL DEATSALD E
Sbjct: 122 LELLELVGLEDKADAYPA-------QLSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174
Query: 918 SECVLQEALERLM-----RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSR 971
+ Q L L G T VL+ H + ++ + D + V++ G +VE+G+ E+ +
Sbjct: 175 TT---QSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231
Query: 972 P 972
P
Sbjct: 232 P 232
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 5e-43
Identities = 84/243 (34%), Positives = 131/243 (53%), Gaps = 25/243 (10%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----P 799
IE+ +++ Y + K+ NL I Q AL+G SG GKS+++ + R D
Sbjct: 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 800 TAGKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG------KEGATEA 851
GKV+ DG+DI +++++ LR ++G+V Q+P F SI+DNIAYG K+
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD 118
Query: 852 EVVEAA-RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 910
E+VE + + A AL + K + + + LSGGQ+QR+ IARA+ P +LLLDE
Sbjct: 119 EIVEESLKKA-------ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEP 171
Query: 911 TSALDAESECVLQEALERLMRGRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELV 969
TSALD + ++E ++ L + T V+V H + R D DG +VE G ++
Sbjct: 172 TSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231
Query: 970 SRP 972
+ P
Sbjct: 232 TNP 234
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 1e-42
Identities = 81/234 (34%), Positives = 126/234 (53%), Gaps = 36/234 (15%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+EL+ + Y S V D +L + G+ AL+G SG GK++++ LI P +G++
Sbjct: 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG------KEGATEAEVVEAA 857
+IDG+D+ + R IG+V Q+ ALF ++ +NIA+G + A V E
Sbjct: 58 LIDGRDV--TGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 858 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 917
+ G ++ P+ +LSGGQ+QR+A+ARA+ + P++LLLDE SALDA+
Sbjct: 116 ELVGLEGLLNRYPH-----------ELSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164
Query: 918 SECVLQEALERLMR--GRTTVLVAH------RLSTIRGVDCIGVVQDGRIVEQG 963
L+E L+ L R G TT+ V H L+ D I V+ +GRIV+ G
Sbjct: 165 LREELREELKELQRELGITTIYVTHDQEEALALA-----DRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 3e-42
Identities = 82/241 (34%), Positives = 122/241 (50%), Gaps = 31/241 (12%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----P 154
IE +++ Y D +D S+ P G+ A++G SG GKST++ L+ R D P
Sbjct: 1 IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 155 NAGHVLLDNVDIKTLQLR--WLRDQIGLVNQEPALFATTILENILYGKP-------EATM 205
+ G VLLD DI L + LR ++G+V Q+P F +I +N+ YG E
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 206 AEVEAAASAANAHSFITLLPNGYSTQVGER--GVQLSGGQKQRIAIARAMLKNPKILLLD 263
VE A A +V +R + LSGGQ+QR+ +ARA+ P++LLLD
Sbjct: 118 ERVEEALRKA-----------ALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLD 166
Query: 264 EATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEE 322
E TSALD S + ++E + L T V+V H + V D A + G++VE G E+
Sbjct: 167 EPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226
Query: 323 L 323
+
Sbjct: 227 I 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 3e-42
Identities = 60/219 (27%), Positives = 108/219 (49%), Gaps = 41/219 (18%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+ NV+FSYP + + ++ S+ G+ +A++G SGSGKST++ L+ P G +
Sbjct: 1 LSINNVSFSYPEQEQQV-LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHS 219
LD V + L+ + L I ++NQ P LF TT+ N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 220 FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 279
G + SGG++QR+A+AR +L++ I+LLDE T LD +E +
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 280 ALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETG 318
+ ++ +T + + H L+ I ++D + ++ G+++ G
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 2e-41
Identities = 89/242 (36%), Positives = 131/242 (54%), Gaps = 27/242 (11%)
Query: 100 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
IE KNV+ + V +D S+ P G+ ++G SG+GKST++ I P +G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 159 VLLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILENILY-----GKPEATMAEVE 209
VL+D D+ L +LR R +IG++ Q L ++ T+ EN+ G P AE+E
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVP---KAEIE 118
Query: 210 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 269
+ L+ G + QLSGGQKQR+ IARA+ NPK+LL DEATSAL
Sbjct: 119 ERV-----LELLELV--GLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSAL 171
Query: 270 D-AGSESIVQEALD---RLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELI 324
D ++SI+ D L G T V++ H + ++ + D VAV+++G+VVE GT EE+
Sbjct: 172 DPETTQSILALLRDINREL--GLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229
Query: 325 AK 326
A
Sbjct: 230 AN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 2e-41
Identities = 80/244 (32%), Positives = 125/244 (51%), Gaps = 36/244 (14%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IE + +T S+ R + + + G+ +A++G SGSGKST++ LI P++G V
Sbjct: 1 IELRGLTKSFGGRT---VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 160 LLDNVDIKTL---QLRWLRDQIGLVNQEPALF-ATTILENILY------GKPEATMAE-V 208
L+D DI L +L LR ++G++ Q ALF + T+ EN+ + E + E V
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 209 EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSA 268
A L P +LSGG K+R+A+ARA+ +P++LL DE T+
Sbjct: 118 LEKLEAVGLRGAEDLYPA-----------ELSGGMKKRVALARALALDPELLLYDEPTAG 166
Query: 269 LDAGSESIVQEALDRLM------VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHE 321
LD I +D L+ +G T+++V H L T + D +AV+ G++V GT E
Sbjct: 167 LD----PIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPE 222
Query: 322 ELIA 325
EL A
Sbjct: 223 ELRA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 3e-41
Identities = 82/241 (34%), Positives = 123/241 (51%), Gaps = 25/241 (10%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE ++ F YP KD +L I G+ L+G +GSGKS+++ L+ PT+G+V
Sbjct: 4 IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 805 MIDGKDIR-RLNLKSLRLKIGLVQQEPA--LFAASIFDNIAYGKE--GATEAEVVEAARA 859
++DG D +L LR K+GLV Q P LF ++ D +A+G E G E+ E
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 860 A----NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 915
A + + P LSGGQKQR+AIA + P ILLLDE T+ LD
Sbjct: 122 ALELVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170
Query: 916 AESECVLQEALERLM--RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 972
+ L E L++L G+T ++V H L + D + V+ DG+I+ G +E+ +
Sbjct: 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
Query: 973 D 973
+
Sbjct: 231 E 231
|
Length = 235 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 151 bits (385), Expect = 3e-41
Identities = 80/240 (33%), Positives = 118/240 (49%), Gaps = 30/240 (12%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E +N++F Y +P I D S P G+ ++G +GSGKST++ + P +G V
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEP-ALFATTILENILYG-KP---------EATMAEV 208
LLD DI +L + L ++ V Q P A F T+ E +L G P + V
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 209 EAAASAANAHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATS 267
E A +R V +LSGG++QR+ IARA+ + ILLLDE TS
Sbjct: 120 EEALELLGLEHLA------------DRPVDELSGGERQRVLIARALAQETPILLLDEPTS 167
Query: 268 ALDAGSESIVQEALDRLMV--GRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 324
LD + V E L L G T V+V H L+ R D + +++ G++V GT EE++
Sbjct: 168 HLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 3e-41
Identities = 80/219 (36%), Positives = 124/219 (56%), Gaps = 14/219 (6%)
Query: 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 805
EL+++ F+YP D +L I+ G+ +VG +GSGKS+++ L+ PT+G+V+
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 806 IDGKDIRRLNLKSLRLKIGLVQQEPA--LFAASIFDNIAYGKE--GATEAEVVEAARAAN 861
+DGKD+ +L+LK LR K+GLV Q P F ++ + +A+G E G E E+ E A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 862 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 921
+ L + LSGGQKQR+AIA + +P ILLLDE T+ LD
Sbjct: 120 ELVGLEGLRDR---SPF----TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172
Query: 922 LQEALERLMR-GRTTVLVAHRLSTIRGV-DCIGVVQDGR 958
L E L++L G+T ++V H L + + D + V++DG+
Sbjct: 173 LLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 4e-41
Identities = 82/233 (35%), Positives = 125/233 (53%), Gaps = 25/233 (10%)
Query: 760 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 819
V D +L +R G+ ++G SGSGKS+++ I R +PT+GKV+IDG+DI ++ K L
Sbjct: 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKEL 96
Query: 820 ----RLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANV------HGFVSA 868
R KI +V Q AL ++ +N+A+G E RAA G+
Sbjct: 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHK 156
Query: 869 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALER 928
P+ +LSGG +QR+ +ARA+ +P ILL+DEA SALD +Q+ L R
Sbjct: 157 YPD-----------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLR 205
Query: 929 L--MRGRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 978
L +T V + H L +R D I +++DGR+V+ G+ E+++ P Y R
Sbjct: 206 LQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVR 258
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 5e-41
Identities = 83/243 (34%), Positives = 133/243 (54%), Gaps = 28/243 (11%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IELR + ++ R V K +L +R G+ A++G SGSGKS+++ LI P +G+V
Sbjct: 1 IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 805 MIDGKDIRRLN---LKSLRLKIGLVQQEPALFAA-SIFDNIAYG-------KEGATEAEV 853
+IDG+DI L+ L LR ++G++ Q ALF + ++F+N+A+ E V
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 854 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 913
+E A + G P +LSGG K+R+A+ARA+ +P +LL DE T+
Sbjct: 118 LEKLEAVGLRGAEDLYPA-----------ELSGGMKKRVALARALALDPELLLYDEPTAG 166
Query: 914 LDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVS 970
LD + V+ + + L + G T+++V H L T + D I V+ DG+IV +G+ EL +
Sbjct: 167 LDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
Query: 971 RPD 973
D
Sbjct: 227 SDD 229
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 9e-41
Identities = 61/219 (27%), Positives = 112/219 (51%), Gaps = 41/219 (18%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+ + +V F+YP + + V K+ +L ++ G+ AL+G SGSGKS+++ L+ P G++
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHG 864
+DG + L K+L I ++ Q P LF ++ +N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 865 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 924
G + SGG++QR+A+AR +L++ I+LLDE T LD +E L
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 925 ALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQG 963
+ +++ +T + + H L+ I +D I +++G+I+ QG
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 9e-41
Identities = 71/223 (31%), Positives = 124/223 (55%), Gaps = 22/223 (9%)
Query: 98 GNIEFKNVTFSY-PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 156
G IE +N++ Y P P V+ ++ S AG+ + +VG +G+GKST++ + RF +
Sbjct: 5 GEIEVENLSVRYAPDLPPVL--KNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 157 GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAAN 216
G + +D +DI T+ L LR + ++ Q+P LF+ TI N+ P ++ E +
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL---DPFDEYSDEEIYGA--- 116
Query: 217 AHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 276
+V E G+ LS GQ+Q + +ARA+LK P++L+LDEAT+++D ++++
Sbjct: 117 -------------LRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163
Query: 277 VQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT 319
+Q+ + T + +AHRL TI + D + V+ G+V E
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 1e-40
Identities = 88/226 (38%), Positives = 128/226 (56%), Gaps = 22/226 (9%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IEFK V++S I +D S+ F G +VG SG+GKST++ LI R DP G +
Sbjct: 4 IEFKEVSYS---SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG---KPEATMAEVEAAASAAN 216
L+D VDIKT+ + LR +IG+V Q+P LF T+ +NI YG K E + +VE S
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNV-DVEYYLSIVG 119
Query: 217 AHSFITLLPNGYSTQVGERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 275
L Y+T R V+ LSGG+ QR++IAR + NP++LLLDE TSALD S
Sbjct: 120 -------LNKEYAT----RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTE 168
Query: 276 IVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 318
I++E + +L + T + + H + + + D A + +G +VE
Sbjct: 169 IIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214
|
Length = 241 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 1e-40
Identities = 81/240 (33%), Positives = 129/240 (53%), Gaps = 25/240 (10%)
Query: 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
+E+R+V ++ D D +L I+ G+ L+G SG GK++++ +I F P++G
Sbjct: 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 803 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG-KEGATEAEVVEAARAA 860
++++DG+DI ++ + IG+V Q ALF ++ +N+A+G K + AR
Sbjct: 61 EILLDGEDIT--DVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118
Query: 861 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 920
V A + P QLSGGQ+QR+A+ARA++ P +LLLDE SALDA+
Sbjct: 119 EALELVGLEGFADRKPH-----QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLRE 173
Query: 921 VLQEALERLMR--GRTTVLVAH------RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
+++ L+ L R G T V V H +S D I V+ DGRI + G+ E+ RP
Sbjct: 174 QMRKELKELQRELGITFVYVTHDQEEALAMS-----DRIAVMNDGRIEQVGTPEEIYERP 228
|
Length = 352 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 148 bits (377), Expect = 2e-40
Identities = 80/234 (34%), Positives = 124/234 (52%), Gaps = 13/234 (5%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE +V Y V + NL I G+ L+G SGSGK++ + +I R +PT+G++
Sbjct: 1 IEFENVTKRYGGGKKAV--NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAY--GKEGATEAEVVEAARAAN 861
IDG+DIR + LR KIG V Q+ LF ++ +NIA + ++ RA
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKI--RERADE 116
Query: 862 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 921
+ V P + +LSGGQ+QR+ +ARA+ +P +LL+DE ALD +
Sbjct: 117 LLALVGLDPAEFA---DRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQ 173
Query: 922 LQEALERLMR--GRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
LQE +RL + G+T V V H + R D I ++++G IV+ G+ E++ P
Sbjct: 174 LQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP 227
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 4e-40
Identities = 79/223 (35%), Positives = 112/223 (50%), Gaps = 22/223 (9%)
Query: 101 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL 160
E KN++FSYP D S+ G+ V +VG +GSGKST++ L+ P +G VL
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 161 LDNVDIKTLQLRWLRDQIGLVNQEPA--LFATTILENILYG-----KPEATMAE-VEAAA 212
+D D+ L L+ LR ++GLV Q P F T+ E + +G PE + E VE A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 213 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272
P LSGGQKQR+AIA + +P ILLLDE T+ LD
Sbjct: 120 ELVGLEGLRDRSPF-----------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
Query: 273 SESIVQEALDRLM-VGRTTVVVAHRLSTIRNV-DTVAVIQQGQ 313
+ E L +L G+T ++V H L + + D V V++ G+
Sbjct: 169 GRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (374), Expect = 4e-40
Identities = 82/242 (33%), Positives = 131/242 (54%), Gaps = 20/242 (8%)
Query: 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
EIE + V + S + KD +++ G +VG SG+GKS++I LI R DPT G
Sbjct: 3 EIEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59
Query: 804 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVH 863
++IDG DI+ +++ LR KIG+V Q+P LF ++ DNI YG +++ + +V
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGP-------MLKGEKNVDVE 112
Query: 864 GFVSA--LPNAYKTPVGERGVQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 920
++S L Y T R V+ LSGG+ QR++IAR + NP +LLLDE TSALD S
Sbjct: 113 YYLSIVGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTE 168
Query: 921 VLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYS 977
+++E + +L T + + H + + + D + G +VE + + P +
Sbjct: 169 IIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228
Query: 978 RL 979
+L
Sbjct: 229 KL 230
|
Length = 241 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 4e-40
Identities = 91/240 (37%), Positives = 140/240 (58%), Gaps = 21/240 (8%)
Query: 745 IELRHVDFAYP-SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
IEL+++ +P + + +L I AG+ ++GASG+GKS++I I PT+G+
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 804 VMIDGKDIRRLNLKSLRL---KIGLVQQEPALFAA-SIFDNIAYGKE--GATEAEVVEAA 857
V++DG+D+ L+ K LR +IG++ Q L ++ ++FDN+A E G +AE+ A
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEI--KA 119
Query: 858 RAANVHGFV--SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 915
R + V S + Y QLSGGQKQR+AIARA+ NP +LL DEATSALD
Sbjct: 120 RVTELLELVGLSDKADRYPA-------QLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
Query: 916 AESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 972
+ + E L+ + R G T VL+ H + ++ + D + V+ GR+VEQG+ SE+ S P
Sbjct: 173 PATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHP 232
|
Length = 343 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 5e-40
Identities = 81/242 (33%), Positives = 127/242 (52%), Gaps = 24/242 (9%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP----- 799
IE+R ++ Y D KD NL I + AL+G SG GKS+++ + R D
Sbjct: 8 IEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 800 TAGKVMIDGKDIR--RLNLKSLRLKIGLVQQEPALFAASIFDNIAYG------KEGATEA 851
G+V++DGK+I ++++ LR ++G+V Q+P F SI+DN+AYG K+ +
Sbjct: 65 VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE 124
Query: 852 EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT 911
V + + A AL + K + + + LSGGQ+QR+ IARA+ P +LL+DE T
Sbjct: 125 IVESSLKKA-------ALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177
Query: 912 SALDAESECVLQEALERLMRGRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVS 970
SALD S ++E + L + T V+V H + R D G +VE G ++ +
Sbjct: 178 SALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFT 237
Query: 971 RP 972
P
Sbjct: 238 NP 239
|
Length = 253 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 146 bits (369), Expect = 8e-40
Identities = 73/224 (32%), Positives = 125/224 (55%), Gaps = 24/224 (10%)
Query: 743 GEIELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 801
GEIE+ ++ Y P P V+ K+ + +++AG+ +VG +G+GKS++I + RF +
Sbjct: 5 GEIEVENLSVRYAPDLPPVL--KNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 802 GKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI-AYGKEGATEAEVVEAARAA 860
GK+ IDG DI + L+ LR + ++ Q+P LF+ +I N+ + + ++ E+ A R
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEY--SDEEIYGALR-- 118
Query: 861 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 920
V E G+ LS GQ+Q + +ARA+LK P +L+LDEAT+++D ++
Sbjct: 119 ----------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 921 VLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGS 964
++Q+ + T + +AHRL TI D I V+ G + E
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 1e-39
Identities = 70/218 (32%), Positives = 115/218 (52%), Gaps = 18/218 (8%)
Query: 100 IEFKNVTFSYPSRPDVI--IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 157
I ++ +F++ S +D ++ P G+ VA+VG GSGKS+++S + + +G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 158 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANA 217
V + I V+QEP + TI ENIL+GKP E A
Sbjct: 61 SV-------------SVPGSIAYVSQEPWIQNGTIRENILFGKPF-DEERYEKVIKACAL 106
Query: 218 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-SESI 276
+ +LP+G T++GE+G+ LSGGQKQRI++ARA+ + I LLD+ SA+DA I
Sbjct: 107 EPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHI 166
Query: 277 VQEAL-DRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQ 313
+ + L+ +T ++V H+L + + D + V+ G+
Sbjct: 167 FENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 1e-39
Identities = 77/220 (35%), Positives = 111/220 (50%), Gaps = 48/220 (21%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E KNV+ Y + D S+ AG+ VA++G SGSGKST++ I +P++G +
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 160 LLDNVDIKTL--QLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAAN 216
L+D D+ L +L LR +IG+V Q+ ALF T+LENI G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 217 AHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 276
LSGGQ+QR+A+ARA+ +P +LLLDE TSALD +
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 277 VQEALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQ 313
V+ L L +G T V+V H L + D V V++ G+
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 1e-39
Identities = 76/206 (36%), Positives = 110/206 (53%), Gaps = 26/206 (12%)
Query: 745 IELRHVDFAYPS-RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
+E+R+V Y V +D +L + G+ ALVG SG GKS+++ +I PT+G+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 804 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE--GATEAEVVEAARAA 860
V++DG+ + G V Q+ AL ++ DN+A G E G +AE E A
Sbjct: 61 VLVDGEPVTGPGPD-----RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115
Query: 861 --NVH--GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 916
V GF +A P+ QLSGG +QR+A+ARA+ +P +LLLDE SALDA
Sbjct: 116 LELVGLSGFENAYPH-----------QLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
Query: 917 ESECVLQEALERLMR--GRTTVLVAH 940
+ LQE L + R G+T +LV H
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTH 190
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 3e-39
Identities = 81/246 (32%), Positives = 125/246 (50%), Gaps = 41/246 (16%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IE KN++ S+ D + + S+ G+ V ++G SGSGKST++ + +P++G +
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 160 LLDNVDI-KTLQLRWLRDQIGLVNQEPALFA-TTILENILYG--------KPEAT---MA 206
+D D+ + LR ++G+V Q+ LF T+LEN+ K EA +
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALE 119
Query: 207 EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEAT 266
+E A A ++ P QLSGGQ+QR+AIARA+ +PK++L DE T
Sbjct: 120 LLEKVGLADKADAY----PA-----------QLSGGQQQRVAIARALAMDPKVMLFDEPT 164
Query: 267 SALDAGSESIVQEALDRLMV-----GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTH 320
SALD +V E LD +M G T ++V H + R V D V + QG+++E G
Sbjct: 165 SALDP---ELVGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPP 220
Query: 321 EELIAK 326
EE
Sbjct: 221 EEFFDN 226
|
Length = 240 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 4e-39
Identities = 82/236 (34%), Positives = 127/236 (53%), Gaps = 18/236 (7%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE +V Y ++ D NL I G+ L+G SGSGK++ + +I R +PT+G++
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAY--GKEGATEAEVVEAARAAN 861
+IDG+DI L+ LR KIG V Q+ LF ++ +NIA G + + RA
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERI--KKRADE 116
Query: 862 VHGFVSALPNAYKT--PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 919
+ V P+ Y P +LSGGQ+QR+ +ARA+ +P ILL+DE ALD +
Sbjct: 117 LLDLVGLDPSEYADRYP-----HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITR 171
Query: 920 CVLQEALERLMR--GRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
LQE ++ L + G+T V V H + ++ D I V+ G IV+ + E+++ P
Sbjct: 172 KQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227
|
Length = 309 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 5e-39
Identities = 77/228 (33%), Positives = 122/228 (53%), Gaps = 24/228 (10%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E K ++ +Y S V D S+ G+ +A++G SG GK+T++ LI P++G +
Sbjct: 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAH 218
L+D D+ + R+ IG+V Q+ ALF T+ ENI +G + V A A
Sbjct: 58 LIDGRDVTGVPPE-RRN-IGMVFQDYALFPHLTVAENIAFG---LKLRGVPKAEIRARVR 112
Query: 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 278
+ L+ G + +LSGGQ+QR+A+ARA+ + P +LLLDE SALDA ++
Sbjct: 113 ELLELV--GLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELR 170
Query: 279 EALDRLM--VGRTTVVVAH------RLSTIRNVDTVAVIQQGQVVETG 318
E L L +G TT+ V H L+ D +AV+ +G++V+ G
Sbjct: 171 EELKELQRELGITTIYVTHDQEEALALA-----DRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 7e-39
Identities = 81/243 (33%), Positives = 130/243 (53%), Gaps = 30/243 (12%)
Query: 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
E+EL++V ++ V KD NL I G+ L+G SG GKS+++ +I +PT+G+
Sbjct: 3 ELELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 804 VMIDGKDIRRLNLKSLRLKIGLVQQEPALF-AASIFDNIAYG------KEGATEAEVVEA 856
++IDG+D+ L + + I +V Q AL+ ++++NIA+G + + V E
Sbjct: 60 ILIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEV 117
Query: 857 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 916
A+ + ++ P QLSGGQ+QR+A+ARA+++ P + LLDE S LDA
Sbjct: 118 AKLLGLEHLLNRKPL-----------QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166
Query: 917 ESE----CVLQEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSR 971
+ +++ ERL G TT+ V H + D I V+ DGRI + G+ EL R
Sbjct: 167 KLRVLMRSEIKKLHERL--GTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224
Query: 972 PDG 974
P
Sbjct: 225 PAN 227
|
Length = 338 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 2e-38
Identities = 75/254 (29%), Positives = 127/254 (50%), Gaps = 32/254 (12%)
Query: 745 IELRHVDFAYPSRPDVV-VFKDFNLRIRAGQSQALVGASGSGKSS---VIALIERFYDPT 800
+ +R++ Y + +L I G++ +VG SGSGKS+ ++A +E+ P+
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PS 60
Query: 801 AGKVMIDGKDIRRL-NLKSLRLKIGLVQQEPAL-------FAASIFDNIAYGKEGATEAE 852
+G +++DGK + K+ + +V Q+P + + + ++
Sbjct: 61 SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR 120
Query: 853 VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 912
+ E V LP ++ R +LSGGQ+QRIAIARA++ P +L+LDE TS
Sbjct: 121 IAELLDQ--VG-----LPPSFLD---RRPHELSGGQRQRIAIARALIPEPKLLILDEPTS 170
Query: 913 ALD----AESECVLQEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSE 967
ALD A+ +L E + RG T + ++H L+ + + D I V+ +G+IVE G E
Sbjct: 171 ALDVSVQAQILNLLLELKKE--RGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEE 228
Query: 968 LVSRPDGAYSRLLQ 981
L+S P Y+R L
Sbjct: 229 LLSHPSHPYTRELL 242
|
Length = 252 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 4e-38
Identities = 74/205 (36%), Positives = 108/205 (52%), Gaps = 28/205 (13%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+E+ V ++ V V +D NL + G+ A++G SG GKS+++ LI PT+G+V
Sbjct: 4 LEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE--GATEAEVVEAARAA- 860
++DG+ + IG V QE AL ++ DN+A G E G ++AE E A+
Sbjct: 61 LLDGRPVTGP-----GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115
Query: 861 ---NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 917
+ GF P+ QLSGG +QR+AIARA+ P +LLLDE ALDA
Sbjct: 116 ELVGLAGFEDKYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164
Query: 918 SECVLQEALERLMR--GRTTVLVAH 940
+ LQ+ L RL +T +LV H
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTH 189
|
Length = 248 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 6e-38
Identities = 76/220 (34%), Positives = 112/220 (50%), Gaps = 48/220 (21%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+EL++V Y V D +L I AG+ AL+G SGSGKS+++ I +P +G +
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 805 MIDGKDIRRLN--LKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAAN 861
+IDG+D+ L L LR +IG+V Q+ ALF ++ +NIA G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 862 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 921
LSGGQ+QR+A+ARA+ +P +LLLDE TSALD +
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 922 LQEALERL--MRGRTTVLVAHRLSTIRGV-DCIGVVQDGR 958
++ L+ L G T VLV H L + D + V++DG+
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 7e-38
Identities = 64/278 (23%), Positives = 135/278 (48%), Gaps = 7/278 (2%)
Query: 423 IMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLI 482
++ + +L+G F +++ ++ + + ++ + + + L+
Sbjct: 2 LIAILLLILAGATALVFPLLLGRFLDSL---IDGNGDERSSLISLAILLIAVGVLQGLLL 58
Query: 483 QHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDE--EEHNSSLVAARLATDAADVKSAIA 540
Q F+ +GE L R+R+ + A+LR +G + ++ + +RL D + ++ +
Sbjct: 59 QGSFY--LGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLG 116
Query: 541 DRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAH 600
D++ + Q++ +++ FIV F W+++L++L PLL+L + L+ KA+
Sbjct: 117 DKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAY 176
Query: 601 AKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALH 660
AK +A E +S IRTV AF + L + L + +++++TAG+ FGI+Q +
Sbjct: 177 AKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISY 236
Query: 661 ASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSV 698
S AL LW+G +LV G + V + + + +
Sbjct: 237 LSYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 1e-37
Identities = 74/240 (30%), Positives = 124/240 (51%), Gaps = 34/240 (14%)
Query: 745 IELRHVDFAYPSRPDVV-VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
+E++++ ++P+ V D + I+ G++ LVG SGSGKS++ I PT+G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 804 VMIDGKDIRRLNLKSLRL---KIGLVQQEPALFAA-----SIFDNIA-----YGKEGATE 850
++ DGKD+ +L+ + ++ +I +V Q+P ++ +I + IA +GK E
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDP--MSSLNPRMTIGEQIAEPLRIHGKLSKKE 119
Query: 851 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 910
A G + N Y P +LSGGQ+QR+AIARA+ NP +L+ DE
Sbjct: 120 ARKEAVLLLLVGVGLPEEVLNRY--PH-----ELSGGQRQRVAIARALALNPKLLIADEP 172
Query: 911 TSALDAESECVLQEALERLMR------GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQG 963
TSALD +Q + L++ G T + + H L + + D + V+ G+IVE+G
Sbjct: 173 TSALDV----SVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 2e-37
Identities = 82/237 (34%), Positives = 124/237 (52%), Gaps = 31/237 (13%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E +NV+ S+ D D S+ G+ V ++G SG GK+T++ +I F P++G +
Sbjct: 6 LEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62
Query: 160 LLDNVDIKTL--QLRWLRDQIGLVNQEPALFAT-TILENILYG-KPEATMAEVEAAASAA 215
LLD DI + + R IG+V Q ALF T+ EN+ +G K + + E A
Sbjct: 63 LLDGEDITDVPPEKR----PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118
Query: 216 NAHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274
A + L +R QLSGGQ+QR+A+ARA++ PK+LLLDE SALDA
Sbjct: 119 EALELVGL------EGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLR 172
Query: 275 SIVQEALDRL--MVGRTTVVVAH------RLSTIRNVDTVAVIQQGQVVETGTHEEL 323
+++ L L +G T V V H +S D +AV+ G++ + GT EE+
Sbjct: 173 EQMRKELKELQRELGITFVYVTHDQEEALAMS-----DRIAVMNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 4e-37
Identities = 75/240 (31%), Positives = 114/240 (47%), Gaps = 25/240 (10%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IE +N++F YP +D S+ G+ V ++G +GSGKST++ L+ P +G V
Sbjct: 4 IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 160 LLDNVDIKTLQLRW-LRDQIGLVNQEPA--LFATTILENILYGKPEATMAEVEAAASAAN 216
L+D +D + + LR ++GLV Q P LF T+ + + +G E E
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG-LENLGLPREEIEERVA 120
Query: 217 AHSFITLLPNGYSTQVGERGVQ------LSGGQKQRIAIARAMLKNPKILLLDEATSALD 270
VG + LSGGQKQR+AIA + P+ILLLDE T+ LD
Sbjct: 121 ----------EALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170
Query: 271 AGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAKA 327
+ E L +L G+T ++V H L + D V V+ G+++ G E+ A
Sbjct: 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
|
Length = 235 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 5e-37
Identities = 82/238 (34%), Positives = 123/238 (51%), Gaps = 26/238 (10%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IEL +V Y V +L I+ G+ L+G SG GK++++ LI F PT+G++
Sbjct: 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG------KEGATEAEVVEAA 857
++DGKDI NL + + V Q ALF ++F+NIA+G + + V EA
Sbjct: 58 LLDGKDI--TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 858 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 917
+ G+ + P+ QLSGGQ+QR+AIARA++ P +LLLDE ALD +
Sbjct: 116 DLVQLEGYANRKPS-----------QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
Query: 918 SECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 972
+Q L+RL + G T V V H + D I V+ G+I + G+ E+ P
Sbjct: 165 LRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 6e-37
Identities = 83/287 (28%), Positives = 137/287 (47%), Gaps = 46/287 (16%)
Query: 722 LDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPD--------VVVFKDFNLRIRAG 773
L I E + + +R++ Y SR V D + +R G
Sbjct: 261 LGDEKIIRLPRRGPLRAEPL---LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREG 317
Query: 774 QSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD--IRRLNLKSLRLKIGLVQQEPA 831
++ LVG SGSGKS++ ++ P++G ++ DG+D + L+ LR +I +V Q+P
Sbjct: 318 ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP- 376
Query: 832 LFAA-----SIFDNIA-----YGKEGATEAEVVEAARAANVHGFVSALPN-AYKTPVGER 880
+++ ++ D +A +G E AR A + V P + P
Sbjct: 377 -YSSLNPRMTVGDILAEPLRIHGGGSGAERR----ARVAELLELVGLPPEFLDRYPH--- 428
Query: 881 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR------GRT 934
+LSGGQ+QR+AIARA+ P +L+LDE SALD +Q + L++ G T
Sbjct: 429 --ELSGGQRQRVAIARALALEPKLLILDEPVSALDV----SVQAQVLNLLKDLQEELGLT 482
Query: 935 TVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 980
+ ++H L+ +R + D + V+ DGRIVE+G ++ P Y+R L
Sbjct: 483 YLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKL 529
|
Length = 539 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 8e-37
Identities = 75/236 (31%), Positives = 124/236 (52%), Gaps = 21/236 (8%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IEF+NVT Y + + ++ G+ + ++G SGSGK+T + +I R +P +G +
Sbjct: 1 IEFENVTKRYGGGKKAV--NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENI-----LYGKPEATMAEVEAAAS 213
+D DI+ LR +IG V Q+ LF T+ ENI L P+ +
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKE-----KIRER 113
Query: 214 AANAHSFITLLPNGYSTQVGER-GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272
A + + L P + +R +LSGGQ+QR+ +ARA+ +P +LL+DE ALD
Sbjct: 114 ADELLALVGLDPAEF----ADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPI 169
Query: 273 SESIVQEALDRL--MVGRTTVVVAHRL-STIRNVDTVAVIQQGQVVETGTHEELIA 325
+ +QE RL +G+T V V H + R D +A+++ G++V+ GT +E++
Sbjct: 170 TRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 1e-36
Identities = 82/233 (35%), Positives = 127/233 (54%), Gaps = 25/233 (10%)
Query: 760 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 819
VV D +L + G+ ++G SGSGKS+++ L+ R +PT G++++DGKDI +L+ L
Sbjct: 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAEL 100
Query: 820 RL----KIGLVQQEPALFA-ASIFDNIAYGKE--GATEAE----VVEAARAANVHGFVSA 868
R KI +V Q AL ++ +N+A+G E G +AE +EA + G+
Sbjct: 101 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADK 160
Query: 869 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALER 928
PN +LSGG +QR+ +ARA+ +P ILL+DEA SALD +Q+ L
Sbjct: 161 YPN-----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLE 209
Query: 929 LMR--GRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 978
L +T V + H L +R D I +++DG IV+ G+ E++ P Y R
Sbjct: 210 LQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVR 262
|
Length = 386 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 2e-36
Identities = 78/226 (34%), Positives = 122/226 (53%), Gaps = 12/226 (5%)
Query: 745 IELRHVDFAYPSRPDVV-VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
IEL++V Y + V KD NL I AG+ A+VG SGSGKS+++ L+ PT+G+
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 804 VMIDGKDIRRLNLKSL----RLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAAR 858
V+I+GKD+ +L+ K L R KIG V Q L ++ +N+ A ++
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 859 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 918
A + + K +LSGGQ+QR+AIARA++ NP I+L DE T LD+++
Sbjct: 122 AEELLEVLGLEDRLLKKKPS----ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177
Query: 919 ECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 962
+ E L L + G+T ++V H + D + ++DG+I E+
Sbjct: 178 AKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 4e-36
Identities = 74/241 (30%), Positives = 125/241 (51%), Gaps = 29/241 (12%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE++++ ++ D V K +L + G+ ++G SGSGKS+++ + +P +G +
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 805 MIDGKDI-RRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG-----KEGATEAEVVEAA 857
+DG+D+ + ++ LR K+G+V Q+ LF ++ +N+ K EA
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAR----E 115
Query: 858 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 917
+A + V A P QLSGGQ+QR+AIARA+ +P ++L DE TSALD E
Sbjct: 116 KALELLEKVGLADKADAYPA-----QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPE 170
Query: 918 SECVLQEALERLMR-----GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSR 971
+ E L+ +M+ G T ++V H + R V D + + G+I+E+G E
Sbjct: 171 L---VGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226
Query: 972 P 972
P
Sbjct: 227 P 227
|
Length = 240 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 4e-36
Identities = 85/245 (34%), Positives = 129/245 (52%), Gaps = 25/245 (10%)
Query: 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD---- 798
G+I ++ +D Y D K NL I Q AL+G SG GKS+ + + R D
Sbjct: 2 GKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPS 58
Query: 799 -PTAGKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG------KEGAT 849
G+V++DG+DI +++ LR ++G+V Q+P F SI+DN+AYG K+
Sbjct: 59 VKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKK 118
Query: 850 EAEVVEAA-RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLD 908
E+VE + + A AL + K + + + LSGGQ+QR+ IARA+ P +LL+D
Sbjct: 119 LDEIVEKSLKGA-------ALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMD 171
Query: 909 EATSALDAESECVLQEALERLMRGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSE 967
E TSALD S ++E ++ L + T V+V H + R D +G IVE G +
Sbjct: 172 EPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231
Query: 968 LVSRP 972
L + P
Sbjct: 232 LFTNP 236
|
Length = 250 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 5e-36
Identities = 73/239 (30%), Positives = 115/239 (48%), Gaps = 24/239 (10%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IE +N+T Y D S G+ ++G +G+GK+T++ ++ P +G +
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENI-----LYGKP-EATMAEVEAAA 212
L+ D+ + +R +IG V QEP+L+ T+ EN+ LYG E +E
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121
Query: 213 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272
L + + +V LSGG KQR++IA A+L +P++L+LDE TS LD
Sbjct: 122 ELFG-------LEDKANKKVR----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 273 SESIVQEALDRL--MVGRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEELIAKAG 328
S + E L L G T ++ H L D V ++ G+++ GT EEL K G
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFG 229
|
Length = 293 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 7e-36
Identities = 75/231 (32%), Positives = 111/231 (48%), Gaps = 44/231 (19%)
Query: 745 IELRHVDFAYPSRPDVVVF--KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
I + F + S F KD NL + G+ A+VG GSGKSS+++ + + +G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 803 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATE--AEVVEAARAA 860
V + G I V QEP + +I +NI +GK E +V++A
Sbjct: 61 SVSVPGS-------------IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKAC--- 104
Query: 861 NVHGFVSAL-------PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 913
AL P+ T +GE+G+ LSGGQKQRI++ARAV + I LLD+ SA
Sbjct: 105 -------ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSA 157
Query: 914 LDAESE------CVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGR 958
+DA C+L L+ +T +LV H+L + D I V+ +GR
Sbjct: 158 VDAHVGRHIFENCILGL----LLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 134 bits (341), Expect = 8e-36
Identities = 69/206 (33%), Positives = 101/206 (49%), Gaps = 26/206 (12%)
Query: 100 IEFKNVTFSYPS-RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
+E +NV+ +Y V D S+ G+ VA+VG SG GKST++ +I P +G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 159 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANA 217
VL+D + G V Q+ AL T+L+N+ G + V A + A
Sbjct: 61 VLVDGEPVTGP-----GPDRGYVFQQDALLPWLTVLDNVALG---LELQGVPKAEARERA 112
Query: 218 HSFITLLPNGYSTQVGERGV------QLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271
+ L VG G QLSGG +QR+A+ARA+ +P +LLLDE SALDA
Sbjct: 113 EELLEL--------VGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
Query: 272 GSESIVQEALDRLMV--GRTTVVVAH 295
+ +QE L + G+T ++V H
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTH 190
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 8e-36
Identities = 77/238 (32%), Positives = 119/238 (50%), Gaps = 30/238 (12%)
Query: 100 IEFKNVTFSYPSRPDVI-IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
+E KN++ S+P+ + D S G+T+ +VG SGSGKST+ I P +G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 159 VLLDNVDIKTL---QLRWLRDQIGLVNQEP--ALFAT-TILENI-----LYGKPEATMAE 207
++ D D+ L + R +I +V Q+P +L TI E I ++GK A
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR 121
Query: 208 VEAAASAA----NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLD 263
EA + P+ +LSGGQ+QR+AIARA+ NPK+L+ D
Sbjct: 122 KEAVLLLLVGVGLPEEVLNRYPH-----------ELSGGQRQRVAIARALALNPKLLIAD 170
Query: 264 EATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 318
E TSALD ++ + + L +L +G T + + H L + + D VAV+ G++VE G
Sbjct: 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 9e-36
Identities = 84/248 (33%), Positives = 131/248 (52%), Gaps = 43/248 (17%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IE + VT S+ R +I + P G+ +A++GGSGSGKST++ LI P+ G +
Sbjct: 9 IEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 160 LLDNVDIKTL---QLRWLRDQIGLVNQEPALF-ATTILENILY------GKPEATMAEVE 209
L+D DI L +L +R ++G++ Q+ ALF + T+ EN+ + PE+ + E+
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 210 AAASAANAHSFITLLPNGYSTQVGERGV-------QLSGGQKQRIAIARAMLKNPKILLL 262
VG RG +LSGG ++R+A+ARA+ +P++L L
Sbjct: 126 LMKLEL----------------VGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFL 169
Query: 263 DEATSALDA-GSESIVQ---EALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVET 317
DE TS LD + I + E D L G T ++V H L ++ + D VAV+ G+V+
Sbjct: 170 DEPTSGLDPISAGVIDELIRELNDAL--GLTVIMVTHDLDSLLTIADRVAVLADGKVIAE 227
Query: 318 GTHEELIA 325
GT EEL+A
Sbjct: 228 GTPEELLA 235
|
Length = 263 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 2e-35
Identities = 91/242 (37%), Positives = 138/242 (57%), Gaps = 27/242 (11%)
Query: 100 IEFKNVTFSYP-SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
IE KN++ +P + + S+ PAG+ V+G SG+GKST++ I P +G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 159 VLLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILENI-----LYGKPEATMAEVE 209
VL+D D+ L +LR R QIG++ Q L ++ T+ +N+ L G P+A E++
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKA---EIK 118
Query: 210 AAASAANAHSFITLLPN-GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSA 268
A + LL G S + QLSGGQKQR+AIARA+ NPK+LL DEATSA
Sbjct: 119 ARVTE--------LLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 269 LD-AGSESIVQ--EALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELI 324
LD A + SI++ + ++R + G T V++ H + ++ + D VAVI G++VE GT E+
Sbjct: 171 LDPATTRSILELLKDINREL-GLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229
Query: 325 AK 326
+
Sbjct: 230 SH 231
|
Length = 343 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 2e-35
Identities = 82/241 (34%), Positives = 134/241 (55%), Gaps = 6/241 (2%)
Query: 743 GEIELRHVDFAYPS--RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT 800
GEI++ + Y + +P V K I+ GQ + G +GSGKSS+ R D
Sbjct: 18 GEIKIHDLCVRYENNLKP---VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF 74
Query: 801 AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAA 860
GK++IDG DI +L L +LR ++ ++ Q+P LF+ SI N+ + T+ + EA A
Sbjct: 75 DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIA 133
Query: 861 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 920
+ V +LP V E G S GQ+Q +ARA ++ +IL++DEAT+++D +E
Sbjct: 134 QLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN 193
Query: 921 VLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 980
+LQ+ + RT V +AHR+STI D + V+ G +VE + L+++ DG ++ L+
Sbjct: 194 ILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253
Query: 981 Q 981
+
Sbjct: 254 R 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 3e-35
Identities = 76/241 (31%), Positives = 124/241 (51%), Gaps = 30/241 (12%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+E+ ++ F Y +P + D + I G+ ++G +GSGKS+++ + P +G+V
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEP-ALFAASIFDNIAYGK----------EGATEAEV 853
++DGKDI L+ K L K+ V Q P A F ++++ + G+ E V
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 854 VEAARAANVHGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATS 912
EA + +R V +LSGG++QR+ IARA+ + ILLLDE TS
Sbjct: 120 EEALELLGLEHLA------------DRPVDELSGGERQRVLIARALAQETPILLLDEPTS 167
Query: 913 ALDAESECVLQEALERLMR--GRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELV 969
LD + + E L L R G T V+V H L+ R D + +++DG+IV QG+ E++
Sbjct: 168 HLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
Query: 970 S 970
+
Sbjct: 228 T 228
|
Length = 258 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 3e-35
Identities = 77/235 (32%), Positives = 127/235 (54%), Gaps = 18/235 (7%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IEF+NV+ Y ++ D ++ G+ + ++G SGSGK+T + +I R +P +G +
Sbjct: 2 IEFENVSKRYGNK---KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAH 218
L+D DI L LR +IG V Q+ LF T+ ENI P+ + + A
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIAT-VPK--LLGWDKERIKKRAD 115
Query: 219 SFITLL---PNGYSTQVGER-GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274
+ L+ P+ Y +R +LSGGQ+QR+ +ARA+ +P ILL+DE ALD +
Sbjct: 116 ELLDLVGLDPSEY----ADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITR 171
Query: 275 SIVQEALDRLM--VGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELIAK 326
+QE + L +G+T V V H + ++ D +AV+ G++V+ T +E++A
Sbjct: 172 KQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
|
Length = 309 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 3e-35
Identities = 77/243 (31%), Positives = 135/243 (55%), Gaps = 27/243 (11%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE+R V ++ R V+ +L + G+ A++G SGSGKS+++ LI P G++
Sbjct: 9 IEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 805 MIDGKDIRRLN---LKSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGAT---EAEVVEAA 857
+IDG+DI +L+ L +R ++G++ Q+ ALF++ ++F+N+A+ T E+ + E
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 858 R----AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 913
+ G A P +LSGG ++R+A+ARA+ +P +L LDE TS
Sbjct: 126 LMKLELVGLRGAA-----ADLYP-----SELSGGMRKRVALARAIALDPELLFLDEPTSG 175
Query: 914 LDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVS 970
LD S V+ E + L G T ++V H L ++ + D + V+ DG+++ +G+ EL++
Sbjct: 176 LDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235
Query: 971 RPD 973
D
Sbjct: 236 SDD 238
|
Length = 263 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 132 bits (336), Expect = 4e-35
Identities = 76/226 (33%), Positives = 112/226 (49%), Gaps = 19/226 (8%)
Query: 745 IELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKS---SVIALIERFYDPT 800
IEL+++ Y + V K +L I G+ A+VG SGSGKS +++ ++R PT
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 801 AGKVMIDGKDIRRLNLKSL----RLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVE 855
+G+V +DG DI +L+ K L R IG V Q L + +N+ A +
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER 117
Query: 856 AARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 915
RA + V L + +LSGGQ+QR+AIARA+ +P I+L DE T LD
Sbjct: 118 RERAEELLERV-GLGDRLNHYPS----ELSGGQQQRVAIARALANDPKIILADEPTGNLD 172
Query: 916 AESECVLQEALERL--MRGRTTVLVAHRLSTIRGVDCIGVVQDGRI 959
+E+ + E L L G T V+V H D I ++DG+I
Sbjct: 173 SETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 4e-35
Identities = 87/259 (33%), Positives = 145/259 (55%), Gaps = 13/259 (5%)
Query: 98 GNIEFKNVTFSY-PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 156
G+I+F++V Y P P V+ F I P+ K V +VG +G+GKS++++ + R +
Sbjct: 1236 GSIKFEDVVLRYRPELPPVLHGLSFEIS-PSEK-VGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 157 GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP--EATMAEVEAAASA 214
G +L+D DI L LR +G++ Q P LF+ T+ N+ P E A++ +
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNL---DPFNEHNDADLWESLER 1350
Query: 215 ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274
A+ I G +V E G S GQ+Q +++ARA+L+ KIL+LDEAT+A+D ++
Sbjct: 1351 AHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTD 1410
Query: 275 SIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLI 334
+++Q+ + T +++AHRL+TI + D + V+ G+VVE T E L++ G+
Sbjct: 1411 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGS----- 1465
Query: 335 RFQEMVRNRDFANPSTRRS 353
F +MV++ AN RS
Sbjct: 1466 AFSKMVQSTGAANAQYLRS 1484
|
Length = 1622 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 7e-35
Identities = 76/240 (31%), Positives = 121/240 (50%), Gaps = 27/240 (11%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN---- 155
IE +N+ Y + ++ ++ P + A++G SG GKST++ + R D
Sbjct: 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 156 -AGHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYG------KPEATMA 206
G VL D DI K + + LR ++G+V Q+P F +I +NI YG K + +
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD 118
Query: 207 EV--EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE 264
E+ E+ AA L + ++ + + LSGGQ+QR+ IARA+ P++LLLDE
Sbjct: 119 EIVEESLKKAA--------LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDE 170
Query: 265 ATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEEL 323
TSALD + ++E + L T V+V H + R D A G++VE G E++
Sbjct: 171 PTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 8e-35
Identities = 76/235 (32%), Positives = 112/235 (47%), Gaps = 30/235 (12%)
Query: 100 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
IE KNV+ Y V +D ++ AG+ VA+VG SGSGKST+++L+ P +G
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 159 VLLDNVDIKTL------QLRWLRDQIGLVNQEPALFAT-TILENILYG------KPEATM 205
VL++ D+ L +LR R +IG V Q L T+LEN+
Sbjct: 62 VLINGKDLTKLSEKELAKLR--RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRK 119
Query: 206 AEVEAAASAAN-AHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE 264
E + P+ +LSGGQ+QR+AIARA++ NPKI+L DE
Sbjct: 120 RAAEELLEVLGLEDRLLKKKPS-----------ELSGGQQQRVAIARALINNPKIILADE 168
Query: 265 ATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVET 317
T LD+ + V E L L G+T ++V H + D V ++ G++ E
Sbjct: 169 PTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 2e-34
Identities = 72/242 (29%), Positives = 121/242 (50%), Gaps = 30/242 (12%)
Query: 100 IEFKNVTFSYPSRPDVI-IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
+ +N++ Y + S+ G+T+ +VG SGSGKST+ L+ P++G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 159 VLLDNVDI-KTLQLRWLRDQIGLVNQEP--ALFATTILENILY------GKPEATMAEVE 209
+LLD + + + + +V Q+P +L + IL G ++ E
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAE 123
Query: 210 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 269
SF+ P+ +LSGGQ+QRIAIARA++ PK+L+LDE TSAL
Sbjct: 124 LLDQVGLPPSFLDRRPH-----------ELSGGQRQRIAIARALIPEPKLLILDEPTSAL 172
Query: 270 DAGSESIVQEALDRL-MVGR----TTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
D S+ + L+ L + + T + ++H L+ + ++ D +AV+ GQ+VE G EEL
Sbjct: 173 DV---SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEEL 229
Query: 324 IA 325
++
Sbjct: 230 LS 231
|
Length = 252 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 3e-34
Identities = 76/253 (30%), Positives = 127/253 (50%), Gaps = 41/253 (16%)
Query: 100 IEFKNVTFSYPSRPDVII--------FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF 151
+ +N++ Y SR + + D S G+T+ +VG SGSGKST+ ++
Sbjct: 281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL 340
Query: 152 YDPNAGHVLLD--NVDIKTLQLRWLRDQIGLVNQEPALFAT-----TILENI-----LYG 199
P++G ++ D ++D+ +LR LR +I +V Q+P +++ T+ + + ++G
Sbjct: 341 LPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP--YSSLNPRMTVGDILAEPLRIHG 398
Query: 200 KPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKI 259
+ E A A + L P E LSGGQ+QR+AIARA+ PK+
Sbjct: 399 G----GSGAERRARVAELLELVGLPPEFLDRYPHE----LSGGQRQRVAIARALALEPKL 450
Query: 260 LLLDEATSALDAGSESIVQEALDRLMV------GRTTVVVAHRLSTIRNV-DTVAVIQQG 312
L+LDE SALD VQ + L+ G T + ++H L+ +R + D VAV+ G
Sbjct: 451 LILDEPVSALDV----SVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDG 506
Query: 313 QVVETGTHEELIA 325
++VE G E++
Sbjct: 507 RIVEEGPTEKVFE 519
|
Length = 539 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 6e-34
Identities = 79/225 (35%), Positives = 118/225 (52%), Gaps = 19/225 (8%)
Query: 133 VVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL---QLRWLR-DQIGLVNQEPALF 188
++G SGSGKST++ I R +P +G VL+D DI + +LR LR +I +V Q AL
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114
Query: 189 A-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247
T+LEN+ +G + E AA A + L + +LSGG +QR+
Sbjct: 115 PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHK-----YPDELSGGMQQRV 169
Query: 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLS-TIRNVD 304
+ARA+ +P ILL+DEA SALD +Q+ L RL + +T V + H L +R D
Sbjct: 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGD 229
Query: 305 TVAVIQQGQVVETGTHEELIAK-AGAYASLIRFQEMVRNRDFANP 348
+A+++ G++V+ GT EE++ A Y E R D A
Sbjct: 230 RIAIMKDGRLVQVGTPEEILTNPANDYVR-----EFFRGVDRAKV 269
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 7e-34
Identities = 70/245 (28%), Positives = 121/245 (49%), Gaps = 22/245 (8%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE+R++ Y D + + G+ L+G +G+GK++++ ++ PT+G++
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNI-----AYGKEGATEAEVVEAAR 858
++ G D+ + +R +IG V QEP+L+ ++ +N+ YG E +E
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEEL- 120
Query: 859 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 918
L + V LSGG KQR++IA A+L +P +L+LDE TS LD ES
Sbjct: 121 LELFG-----LEDKANKKVR----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171
Query: 919 ECVLQEALERLMR-GRTTVLVA-HRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPDGA 975
+ E L L + G T+L++ H L D + ++ DG+I+ +G+ EL + G
Sbjct: 172 RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGK 231
Query: 976 YSRLL 980
L
Sbjct: 232 GVIEL 236
|
Length = 293 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 7e-34
Identities = 73/223 (32%), Positives = 108/223 (48%), Gaps = 13/223 (5%)
Query: 100 IEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
IE KN++ +Y + V + S+ G+ VA+VG SGSGKST+++++ P +G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 159 VLLDNVDIKTL----QLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAAS 213
V +D DI L + R IG V Q L T LEN+ +A V
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP---LLLAGVPKKER 117
Query: 214 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 273
A + + G ++ +LSGGQ+QR+AIARA+ +PKI+L DE T LD+ +
Sbjct: 118 RERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175
Query: 274 ESIVQEALDRL--MVGRTTVVVAHRLSTIRNVDTVAVIQQGQV 314
V E L L G T VVV H D + ++ G++
Sbjct: 176 GKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 7e-34
Identities = 85/255 (33%), Positives = 132/255 (51%), Gaps = 25/255 (9%)
Query: 733 PDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIAL 792
V T +I++R+++F Y K+ NL I Q A +G SG GKS+++
Sbjct: 2 AMMSMVATAPSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRT 58
Query: 793 IERFYD--P---TAGKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG- 844
R Y+ P G++++DG++I + ++ LR K+G+V Q+P F SI+DNIA+G
Sbjct: 59 FNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGV 118
Query: 845 --KEGATEAEV---VE-AARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 898
E + AE+ VE A A AL N K + + G LSGGQ+QR+ IAR +
Sbjct: 119 RLFEKLSRAEMDERVEWALTKA-------ALWNEVKDKLHQSGYSLSGGQQQRLCIARGI 171
Query: 899 LKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRL-STIRGVDCIGVVQDG 957
P +LLLDE SALD S ++E + L + T V+V H + R D + G
Sbjct: 172 AIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLG 231
Query: 958 RIVEQGSHSELVSRP 972
++E G+ + ++P
Sbjct: 232 ELIEFGNTDTIFTKP 246
|
Length = 260 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 8e-34
Identities = 106/437 (24%), Positives = 211/437 (48%), Gaps = 45/437 (10%)
Query: 429 SVLSG----FIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQH 484
+ +SG F F ++M M ++ + +F + G++ + I
Sbjct: 69 ATISGGTLPFFVSVFGVIMKNM----------NLGENVNDIIFSLVLIGIFQFILSFISS 118
Query: 485 YFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDA----ADVKSAIA 540
+ + +TT++ + + L++ V + D + H+++ ++L +D V + I
Sbjct: 119 FCMDV----VTTKILKTLKLEFLKS-VFYQDGQFHDNN-PGSKLTSDLDFYLEQVNAGIG 172
Query: 541 DRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLL----VLANFAQQLSLKGFAGDT 596
+ I ++ L +I + R++L I +PL+ V+ N +++ K T
Sbjct: 173 TKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKK-----T 227
Query: 597 AKAHAKTSM-IAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGIS 655
+ + +M I E + IRTV ++ + IL F ++ L+ + + G+
Sbjct: 228 SLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMI 287
Query: 656 QFALHASEALILWYGVHLVGKGVSTF--------SKVIKVFVVLVVTANSVAETVSLAPE 707
+ AS A WYG ++ +S VI + + ++++ + + E
Sbjct: 288 NGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITE 347
Query: 708 IIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFN 767
++ E+ S++ ++R ++ +D D + ++ I+ +I+ ++V F Y +R DV ++KD N
Sbjct: 348 YMKSLEATNSLYEIINRKPLVENND-DGKKLKDIK-KIQFKNVRFHYDTRKDVEIYKDLN 405
Query: 768 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI-DGKDIRRLNLKSLRLKIGLV 826
+ G++ A VG SG GKS+++ LIER YDPT G ++I D +++ +NLK R KIG+V
Sbjct: 406 FTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVV 465
Query: 827 QQEPALFAASIFDNIAY 843
Q+P LF+ SI +NI Y
Sbjct: 466 SQDPLLFSNSIKNNIKY 482
|
Length = 1466 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 1e-33
Identities = 59/218 (27%), Positives = 108/218 (49%), Gaps = 48/218 (22%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE+R++ Y + D +L + G+ L+G +G+GK+++I +I P +G++
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVH 863
+ GKDI++ + ++ +IG + +EP+L+ ++ +N+
Sbjct: 58 KVLGKDIKK-EPEEVKRRIGYLPEEPSLYENLTVRENL---------------------- 94
Query: 864 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 923
+LSGG KQR+A+A+A+L +P +L+LDE TS LD ES
Sbjct: 95 -------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 924 EALERLMRGRTTVLVA-HRLSTIRGV-DCIGVVQDGRI 959
E L L + T+L++ H L + D + ++ +GRI
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 2e-33
Identities = 74/241 (30%), Positives = 138/241 (57%), Gaps = 8/241 (3%)
Query: 98 GNIEFKNVTFSYPSRPDV-IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 156
G +EF+N Y R D+ ++ R ++ G+ V +VG +G+GKS++ + R +
Sbjct: 1283 GRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE 1340
Query: 157 GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEA--AASA 214
G +++D ++I + L LR +I ++ Q+P LF+ ++ N+ P + ++ E A
Sbjct: 1341 GEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNL---DPFSQYSDEEVWWALEL 1397
Query: 215 ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274
A+ +F++ LP+ + E G LS GQ+Q + +ARA+L+ KIL+LDEAT+A+D ++
Sbjct: 1398 AHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETD 1457
Query: 275 SIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLI 334
+++Q + T + +AHRL+TI + V V+ +G+V E G L+ + G + S+
Sbjct: 1458 NLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMA 1517
Query: 335 R 335
+
Sbjct: 1518 K 1518
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 2e-33
Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 26/227 (11%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE++++ ++ V K +L ++ G+ ++G SGSGKS+++ I +P +G +
Sbjct: 1 IEIKNLHKSFGDF---HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 805 MIDGKDI--RRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGK---EGATEAEVVEAAR 858
+IDG + + N+ LR K+G+V Q+ LF ++ +NI +G ++AE E A
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERAL 117
Query: 859 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 918
V A P QLSGGQ+QR+AIARA+ NP ++L DE TSALD E
Sbjct: 118 EL--LEKVGLADKADAYPA-----QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPE- 169
Query: 919 ECVLQEALERLMR-----GRTTVLVAHRLSTIRGV-DCIGVVQDGRI 959
++ E L+ +M+ G T V+V H + R V D + + DGRI
Sbjct: 170 --LVGEVLD-VMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 2e-33
Identities = 77/228 (33%), Positives = 120/228 (52%), Gaps = 20/228 (8%)
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR 813
+ K+ ++I Q A++G SG GK++++ I R D GK+ G+DI
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74
Query: 814 --LNLKSLRLKIGLVQQEPALFAASIFDNIAYG------KEGATEAEVVEAARAANVHGF 865
L++ R K+G+V Q+P F SI+DN+A+G K +VE +
Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKK----- 129
Query: 866 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEA 925
+AL + K+ + + G +LSGGQ+QR+ IARA+ P ++LLDE TSALD + +++
Sbjct: 130 -AALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKL 188
Query: 926 LERLMRGRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
LE L T V+V H + IR D I + G ++E G E+V RP
Sbjct: 189 LEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERP 236
|
Length = 250 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 2e-33
Identities = 65/222 (29%), Positives = 105/222 (47%), Gaps = 46/222 (20%)
Query: 101 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL 160
E +N++ Y R + D S+ AG+ V ++G +G+GKST++ + P++G +L
Sbjct: 1 EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 161 LDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSF 220
LD D+ +L + L +I V Q + + A A
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ--------------------ALELLGLAHLA------ 91
Query: 221 ITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 279
+R +LSGG++QR+ +ARA+ + P ILLLDE TS LD + + E
Sbjct: 92 -------------DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE 138
Query: 280 ALDRL--MVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETG 318
L RL G+T V+V H L+ R D V +++ G++V G
Sbjct: 139 LLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 3e-33
Identities = 76/227 (33%), Positives = 119/227 (52%), Gaps = 26/227 (11%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IE KN+ S+ + + + G+ V ++G SGSGKST++ I +P++G +
Sbjct: 1 IEIKNLHKSFGDFH---VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 160 LLDNVDI--KTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEA---AAS 213
++D + + + LR ++G+V Q+ LF T+LENI T+A ++ + +
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENI-------TLAPIKVKGMSKA 110
Query: 214 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 273
A + L G + + QLSGGQ+QR+AIARA+ NPK++L DE TSALD
Sbjct: 111 EAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDP-- 168
Query: 274 ESIVQEALDRLMV-----GRTTVVVAHRLSTIRNV-DTVAVIQQGQV 314
+V E LD +M G T VVV H + R V D V + G++
Sbjct: 169 -ELVGEVLD-VMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 7e-33
Identities = 75/219 (34%), Positives = 119/219 (54%), Gaps = 11/219 (5%)
Query: 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG-----KVMIDGKDI-RRLNL 816
K NL I A Q AL+G SG GKS+++ + R D G K+ +DG+DI +++
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 817 KSLRLKIGLVQQEPALFAASIFDNIAYG--KEGATEAEVVEAARAANVHGFVSALPNAYK 874
LR+K+G+V Q+P F SI++N+AYG +G + +V++ ++ G +AL + K
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRG--AALWDEVK 136
Query: 875 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRT 934
+ LSGGQ+QR+ IAR + P ++L+DE TSALD + ++E +E L + T
Sbjct: 137 DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYT 196
Query: 935 TVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 972
V+V H + R + D G +VE + S P
Sbjct: 197 IVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNP 235
|
Length = 249 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 8e-33
Identities = 79/248 (31%), Positives = 126/248 (50%), Gaps = 40/248 (16%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IE +N++ +YP+ +D S+ G+ VA++G SG+GKST++ + +P +G V
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 160 LLDNVDIKTLQ---LRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAA 215
L+D DI L+ LR LR QIG++ Q+ L ++LEN+L G+
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGR--------------L 104
Query: 216 NAHSFITLLPNGYS-----------TQVG------ERGVQLSGGQKQRIAIARAMLKNPK 258
S L + +VG +R QLSGGQ+QR+AIARA+++ PK
Sbjct: 105 GRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPK 164
Query: 259 ILLLDEATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIR-NVDTVAVIQQGQVV 315
++L DE ++LD S V + L R+ G T +V H++ R D + ++ G++V
Sbjct: 165 LILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224
Query: 316 ETGTHEEL 323
G EL
Sbjct: 225 FDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 8e-33
Identities = 78/229 (34%), Positives = 119/229 (51%), Gaps = 25/229 (10%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL---- 819
D +L I G+ ++G SGSGKS+ + ++ R +PTAG++ IDG++I + + L
Sbjct: 10 NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVR 69
Query: 820 RLKIGLVQQEPALFA-ASIFDNIAYGKE--GATEAEVVEAARAA----NVHGFVSALPNA 872
R KIG+V Q+ ALF +I N + G E G E E E A + + P+
Sbjct: 70 RKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD- 128
Query: 873 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR- 931
+LSGG +QR+ +ARA+ P ILL+DEA SALD +Q+ L++L
Sbjct: 129 ----------ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT 178
Query: 932 -GRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 978
+T V + H L IR D I +++ G IV+ G+ E++ P Y
Sbjct: 179 LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVE 227
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 1e-32
Identities = 87/243 (35%), Positives = 130/243 (53%), Gaps = 36/243 (14%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+ELR + ++ + V + +L I G+ L+G SG GK++V+ LI F P +G++
Sbjct: 15 VELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG----KEGATEAE--VVEAA 857
M+DG+DI ++ + + V Q ALF ++F+N+A+G K A E V+EA
Sbjct: 72 MLDGQDIT--HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEAL 129
Query: 858 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 917
R + F A + P QLSGGQ+QR+AIARAV+ P +LLLDE+ SALD +
Sbjct: 130 RMVQLEEF------AQRKPH-----QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
Query: 918 SECVLQEALERLMR--GRTTVLVAH------RLSTIRGVDCIGVVQDGRIVEQGSHSELV 969
+Q L+ L R G T V V H +S D I V++DGRI + G+ E+
Sbjct: 179 LRKQMQNELKALQRKLGITFVFVTHDQEEALTMS-----DRIVVMRDGRIEQDGTPREIY 233
Query: 970 SRP 972
P
Sbjct: 234 EEP 236
|
Length = 375 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 1e-32
Identities = 73/219 (33%), Positives = 117/219 (53%), Gaps = 23/219 (10%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823
K+ +L + G ++G +GSGKS ++ I F P +GK++++GKDI NL + I
Sbjct: 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKRDI 73
Query: 824 GLVQQEPALFA-ASIFDNIAYG------KEGATEAEVVEAARAANVHGFVSALPNAYKTP 876
V Q ALF +++ NIAYG + E +V+E A + L N
Sbjct: 74 SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGI----DHLLNRKPE- 128
Query: 877 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTT 935
LSGG++QR+AIARA++ NP ILLLDE SALD ++ L+E L+++ + T
Sbjct: 129 ------TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVT 182
Query: 936 VL-VAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 972
VL V H + D + ++ +G++++ G E+ +P
Sbjct: 183 VLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 1e-32
Identities = 79/231 (34%), Positives = 113/231 (48%), Gaps = 30/231 (12%)
Query: 758 PDVVVFKDFNLRIRAGQSQALVGASGSGKSS---VIALIERFYDPTAGKVMIDGKDIRRL 814
D +L I++G+ AL+G SG+GKS+ +IA +E P AG++ ++G+ + +
Sbjct: 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDV 69
Query: 815 -NLKSLRLKIGLVQQEPALFA-ASIFDNIAYG--------KEGATEAEVVEAARAANVHG 864
NL K+G V Q ALF ++ DNIA+G E A V E R + G
Sbjct: 70 SNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEG 129
Query: 865 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 924
P QLSGGQ+QR+A+ARA+ P +LLLDE ALDA+ L+
Sbjct: 130 LADRYPA-----------QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR 178
Query: 925 ALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 972
L +L G TTV V H + D + V+ GRI + G E+ P
Sbjct: 179 WLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHP 229
|
Length = 345 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 1e-32
Identities = 75/236 (31%), Positives = 115/236 (48%), Gaps = 27/236 (11%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
I +V AYP +D + I G+ L G SG+GKS+++ LI PT GK+
Sbjct: 2 IRFENVSKAYPGGR--EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 805 MIDGKDIRRLNLKS---LRLKIGLVQQEPALFAA-SIFDNIAY-----GKEGATEAEVVE 855
+++G D+ RL + LR +IG+V Q+ L ++++N+A GK V
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 856 AA-RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 914
+ ALP+ QLSGG++QR+AIARA++ PA+LL DE T L
Sbjct: 120 EVLDLVGLKHKARALPS-----------QLSGGEQQRVAIARAIVNQPAVLLADEPTGNL 168
Query: 915 DAESECVLQEALERLMRGRTTVLVA-HRLSTIRGVD--CIGVVQDGRIVEQGSHSE 967
D + + E + R TTVL+A H L + + + ++DGR+V S
Sbjct: 169 DPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVL-ALEDGRLVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 3e-32
Identities = 76/242 (31%), Positives = 120/242 (49%), Gaps = 32/242 (13%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN---- 155
IE +++ Y D +D ++ P K A++G SG GKST++ + R D
Sbjct: 8 IEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64
Query: 156 -AGHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYG------KPEATMA 206
G VLLD +I + + LR ++G+V Q+P F +I +N+ YG K +
Sbjct: 65 VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE 124
Query: 207 EVEAAASAANAHSFITLLPNGYSTQVGER----GVQLSGGQKQRIAIARAMLKNPKILLL 262
VE++ A L + +V +R + LSGGQ+QR+ IARA+ P++LL+
Sbjct: 125 IVESSLKKAA-------LWD----EVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLM 173
Query: 263 DEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHE 321
DE TSALD S ++E + L T V+V H + R D A G++VE G +
Sbjct: 174 DEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTD 233
Query: 322 EL 323
++
Sbjct: 234 KI 235
|
Length = 253 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 3e-32
Identities = 76/254 (29%), Positives = 124/254 (48%), Gaps = 35/254 (13%)
Query: 750 VDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKS----SVIALIERFYDPTAGKVM 805
V+FA V +D + + G+ +VG SGSGKS +++ L+ T+G+V+
Sbjct: 13 VEFATDGGRVPAV-RDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI 71
Query: 806 IDGKDIRRLNLKSLRL----KIGLVQQEPALFAA-----SIFDNI-----AYGKEGATEA 851
+DG+D+ L+ + +R +I ++ Q+P + +I D I +GK EA
Sbjct: 72 LDGRDLLGLSEREMRKLRGKRIAMIFQDP--MTSLNPVMTIGDQIREALRLHGKGSRAEA 129
Query: 852 EVVEAARAANVHGFVSALPNAYKTPVGERGV--QLSGGQKQRIAIARAVLKNPAILLLDE 909
RA + V LP+ P QLSGG +QR+ IA A+ P +L+ DE
Sbjct: 130 R----KRAVELLEQVG-LPD----PERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADE 180
Query: 910 ATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHS 966
T+ALD ++ + + L+ L R G + + H L + + D + V+ G IVE G
Sbjct: 181 PTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTE 240
Query: 967 ELVSRPDGAYSRLL 980
E++S P Y+R L
Sbjct: 241 EILSNPQHPYTRGL 254
|
Length = 539 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 3e-32
Identities = 75/249 (30%), Positives = 122/249 (48%), Gaps = 32/249 (12%)
Query: 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
IE KN++ +YP +D ++ G+ VA++G SG+GKST++ + DP +G
Sbjct: 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 159 VLLDNVDIKTL---QLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASA 214
+L + V I L +LR LR IG++ Q+ L ++LEN+L G+
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGR----------LGYT 110
Query: 215 ANAHSFITLLPN-------------GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILL 261
+ S L G + +R LSGGQ+QR+AIARA+++ PKI+L
Sbjct: 111 STWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIIL 170
Query: 262 LDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318
DE ++LD S V + L + G T +V H++ + D + ++ G++V G
Sbjct: 171 ADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230
Query: 319 THEELIAKA 327
EL +A
Sbjct: 231 PASELTDEA 239
|
Length = 258 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (315), Expect = 5e-32
Identities = 69/205 (33%), Positives = 99/205 (48%), Gaps = 28/205 (13%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E + V+ S+ V + D ++ G+ VA++G SG GKST++ LI P +G V
Sbjct: 4 LEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANA- 217
LLD + IG V QE AL T+L+N+ G ++ EA A
Sbjct: 61 LLDGRPVTGP-----GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115
Query: 218 -----HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272
F P+ QLSGG +QR+AIARA+ PK+LLLDE ALDA
Sbjct: 116 ELVGLAGFEDKYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164
Query: 273 SESIVQEALDRLM--VGRTTVVVAH 295
+ +Q+ L RL +T ++V H
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTH 189
|
Length = 248 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 5e-32
Identities = 83/242 (34%), Positives = 130/242 (53%), Gaps = 28/242 (11%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE+ ++ YP+ KD +L I G+ AL+G SG+GKS+++ + +PT+G V
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 805 MIDGKDIRRL---NLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGA-----------T 849
+IDG DI +L L+ LR +IG++ Q+ L S+ +N+ G+ G
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118
Query: 850 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 909
+ E A A V L AY+ R QLSGGQ+QR+AIARA+++ P ++L DE
Sbjct: 119 KEEKQRALAALER---VGLLDKAYQ-----RADQLSGGQQQRVAIARALMQQPKLILADE 170
Query: 910 ATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHS 966
++LD S + + L+R+ R G T ++ H++ R D I ++DGRIV G +
Sbjct: 171 PVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPA 230
Query: 967 EL 968
EL
Sbjct: 231 EL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 5e-32
Identities = 67/244 (27%), Positives = 121/244 (49%), Gaps = 28/244 (11%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
I+ +NV+FSYP+ + + ++ S G+ VA++G +GSGKST+ ++ P +G +
Sbjct: 8 IKVENVSFSYPNSENNAL-KNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEP--ALFATTILENILYG------KPEATMAEVEAA 211
+D + I L+ +R +IG++ Q P T+ ++I +G P+ ++
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 212 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271
A ++ P LSGGQKQR+AIA + NP+I++ DE+TS LD
Sbjct: 127 AKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 272 -GSESIVQEALDRLMVGRTTVV-VAHRLSTIRNVDTVAVIQQGQVVETG------THEEL 323
G I + +D + T++ + H + D V V +G+++ G ++E+
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNKEI 235
Query: 324 IAKA 327
+ KA
Sbjct: 236 LEKA 239
|
Length = 271 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 8e-32
Identities = 77/242 (31%), Positives = 128/242 (52%), Gaps = 28/242 (11%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE++++ YP KD NL I G+ A++G SG+GKS+++ + DPT+G++
Sbjct: 4 IEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 805 MIDGKDIRRLN---LKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGA-----------T 849
+ +G I +L L+ LR IG++ Q+ L S+ +N+ G+ G +
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121
Query: 850 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 909
+ + +A A V L AY+ R LSGGQ+QR+AIARA+++ P I+L DE
Sbjct: 122 KEDKAQALDALE---RVGILDKAYQ-----RASTLSGGQQQRVAIARALVQQPKIILADE 173
Query: 910 ATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHS 966
++LD ES + + L+ + + G T ++ H++ + D I ++ GRIV G S
Sbjct: 174 PVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPAS 233
Query: 967 EL 968
EL
Sbjct: 234 EL 235
|
Length = 258 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 134 bits (337), Expect = 1e-31
Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 13/229 (5%)
Query: 3 KGLGLGCTYGIACMSWALVFWYAGVFIRNGVTD--------GGKAFTAIFSAIVGGMSLG 54
+ L +G G S+A FWY I + +++ GG + + ++ L
Sbjct: 280 ESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLT 339
Query: 55 QSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPD 114
N+ + K A L EII +KP ++++ +G+ L ++ I+FKNV F Y +R D
Sbjct: 340 IILPNITEYMKSLEATNSLYEIINRKP-LVENNDDGKKLKDIK-KIQFKNVRFHYDTRKD 397
Query: 115 VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL-DNVDIKTLQLRW 173
V I++D + GKT A VG SG GKST++ LIER YDP G +++ D+ ++K + L+W
Sbjct: 398 VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKW 457
Query: 174 LRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFIT 222
R +IG+V+Q+P LF+ +I NI Y ++ ++EA ++ N +
Sbjct: 458 WRSKIGVVSQDPLLFSNSIKNNIKYSL--YSLKDLEALSNYYNEDGNDS 504
|
Length = 1466 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 1e-31
Identities = 84/239 (35%), Positives = 129/239 (53%), Gaps = 19/239 (7%)
Query: 115 VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL---QL 171
V+ D S+ G+ ++G SGSGKST+V L+ R +P G +L+D DI L +L
Sbjct: 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAEL 100
Query: 172 RWLR-DQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYS 229
R LR +I +V Q AL T+LEN+ +G + + E A A + L GY+
Sbjct: 101 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE--GYA 158
Query: 230 TQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL--MVG 287
+ +LSGG +QR+ +ARA+ +P ILL+DEA SALD + +Q+ L L +
Sbjct: 159 DK---YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK 215
Query: 288 RTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELIAK-AGAYASLIRFQEMVRNRD 344
+T V + H L +R D +A+++ G++V+ GT EE++ A Y + VRN D
Sbjct: 216 KTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVR-----DFVRNVD 269
|
Length = 386 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 1e-31
Identities = 75/214 (35%), Positives = 115/214 (53%), Gaps = 7/214 (3%)
Query: 765 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA---GKVMIDGKDIRRLNLKSLRL 821
D N++I + AL+GASG GKS+ + R D A G V I+GKD++ ++ +LR
Sbjct: 20 DINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79
Query: 822 KIGLVQQEPALFAASIFDNIAYGKE--GATEAEVVEAARAANVHGFVSALPNAYKTPVGE 879
+G+V Q+P +F SI++NI+Y + G + + E A + V L K + +
Sbjct: 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKV-GLFEEVKDKLKQ 138
Query: 880 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVA 939
+ LSGGQ+QR+ IARA+ P +LLLDE TSALD S V++E L+ L + ++V
Sbjct: 139 NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVT 198
Query: 940 HRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 972
H + + V D G ++E G E P
Sbjct: 199 HNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232
|
Length = 246 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 1e-31
Identities = 73/229 (31%), Positives = 118/229 (51%), Gaps = 26/229 (11%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+EL +V +V D NL I G+ L+G SG GK++ + +I +PT+G++
Sbjct: 1 VELENV---TKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG------KEGATEAEVVEAA 857
I G+D+ L K R I +V Q AL+ +++DNIA+G + + V E A
Sbjct: 58 YIGGRDVTDLPPKD-R-DIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 858 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 917
+ + P QLSGGQ+QR+A+ RA+++ P + L+DE S LDA+
Sbjct: 116 ELLQIEHLLDRKPK-----------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
Query: 918 SECVLQEALERLMR--GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQG 963
++ L+RL + G TT+ V H ++ + D I V+ DG+I + G
Sbjct: 165 LRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 126 bits (317), Expect = 2e-31
Identities = 69/210 (32%), Positives = 108/210 (51%), Gaps = 23/210 (10%)
Query: 778 LVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-AS 836
L+G SG GK++++ L+ F P +G +M+DG+D+ N+ I +V Q ALF +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV--TNVPPHLRHINMVFQSYALFPHMT 58
Query: 837 IFDNIAYG----KEGATE--AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890
+ +N+A+G K E V+EA R + F P+ QLSGGQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPH-----------QLSGGQQQ 107
Query: 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLS-TIRG 947
R+A+ARA++ P ILLLDE SALD + +Q L+ + G T V V H +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 948 VDCIGVVQDGRIVEQGSHSELVSRPDGAYS 977
D I +++ G+I + G+ E+ P +
Sbjct: 168 SDRIAIMRKGKIAQIGTPEEIYEEPANLFV 197
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 2e-31
Identities = 79/228 (34%), Positives = 113/228 (49%), Gaps = 23/228 (10%)
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 818
D NL + G AL+G SGSGKS+++ +I P +G++ ++G+D R++ +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR- 70
Query: 819 LRLKIGLVQQEPALFA-ASIFDNIAYGKE------GATEAEVVEAARAANVHGFVSALPN 871
KIG V Q ALF ++ DNIA+G E +A V E + G PN
Sbjct: 71 -DRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN 129
Query: 872 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR 931
QLSGGQ+QR+A+ARA+ P +LLLDE ALDA+ L+ L +L
Sbjct: 130 -----------QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD 178
Query: 932 --GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAY 976
TTV V H V D I V+ +G+I + GS E+ P +
Sbjct: 179 EVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 4e-31
Identities = 83/259 (32%), Positives = 138/259 (53%), Gaps = 13/259 (5%)
Query: 82 SIIQDPTNGRCLDEVNGNIEFKNVTFSYPS--RPDVIIFRDFSIFFPAGKTVAVVGGSGS 139
SI +G L + G I+ ++ Y + +P + + + G+ V + G +GS
Sbjct: 4 SISGSSNSG--LVGLGGEIKIHDLCVRYENNLKP---VLKHVKAYIKPGQKVGICGRTGS 58
Query: 140 GKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG 199
GKS++ R D G +++D +DI L L LR ++ ++ Q+P LF+ +I N+
Sbjct: 59 GKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNL--- 115
Query: 200 KPEATMAE--VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257
PE + + A A + + LP G V E G S GQ+Q +ARA ++
Sbjct: 116 DPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175
Query: 258 KILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVET 317
IL++DEAT+++D +E+I+Q+ + RT V +AHR+STI + D V V+ +G +VE
Sbjct: 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVEC 235
Query: 318 GTHEELIA-KAGAYASLIR 335
T E L+A + G +ASL+R
Sbjct: 236 DTPENLLAQEDGVFASLVR 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 4e-31
Identities = 79/214 (36%), Positives = 114/214 (53%), Gaps = 26/214 (12%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE +V AYP V D +L IR G+ L G SG+GK++++ L+ P+ G+V
Sbjct: 2 IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 805 MIDGKDIRRLN---LKSLRLKIGLVQQEPALFAA-SIFDNIA------YGKEGATEAEVV 854
I G+D+ RL L LR +IG+V Q+ L ++++N+A KE + V
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 855 EAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 914
A R V A P QLSGG++QR+AIARA++ +P +LL DE T L
Sbjct: 120 AALRQ------VGLEHKADAFPE-----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168
Query: 915 DAE-SECVLQEALERLMRGRTTVLVA-HRLSTIR 946
D + SE +L L+RL + TTV+VA H LS +
Sbjct: 169 DPDLSERILD-LLKRLNKRGTTVIVATHDLSLVD 201
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 4e-31
Identities = 74/226 (32%), Positives = 112/226 (49%), Gaps = 21/226 (9%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDI--RRL 814
+ D NL I + A +G SG GKS+ + R D G++ IDG D+
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 815 NLKSLRLKIGLVQQEPALFAASIFDNIAYG-------KEGATEAEVVEAARAANVHGFVS 867
N+ LR K+G+V Q+P F SI+DN+AYG K E+VE + +
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTS------V 133
Query: 868 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 927
L + + +LSGGQ+QR+ IARA+ P +LL+DE SALD + V++ ++
Sbjct: 134 GLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQ 193
Query: 928 RLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 972
L + T ++V H + + V D + Q GRIVE + E+ P
Sbjct: 194 ELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNP 239
|
Length = 251 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 8e-31
Identities = 77/240 (32%), Positives = 120/240 (50%), Gaps = 15/240 (6%)
Query: 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--PTA 801
+I+ R V+F Y D K ++ I A +G SG GKS+ + L R D P
Sbjct: 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT 59
Query: 802 ---GKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG--KEGATEAEVV 854
G++ IDG++I + + + LR +G+V Q P F SIF+N+AYG G + +
Sbjct: 60 RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFI 119
Query: 855 EAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 914
+ G +AL + K + E LSGGQ+QR+ IARA+ +P++LL+DE SAL
Sbjct: 120 RQRVEETLKG--AALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASAL 177
Query: 915 DAESECVLQEALERLMRGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVSRPD 973
D S ++E + L + T V+V H + R D G +VE ++ + P+
Sbjct: 178 DPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPE 237
|
Length = 250 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 8e-31
Identities = 76/250 (30%), Positives = 120/250 (48%), Gaps = 35/250 (14%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+ +V FSY P F + PAG+ VA++G SG+GKST+++LI F P +G +
Sbjct: 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG-KPEATMAE-----VEAAA 212
L++ VD + ++ QE LFA T+ +NI G P + VEAAA
Sbjct: 57 LINGVDHTASPPA--ERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAA 114
Query: 213 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272
+ F+ LP +LSGGQ+QR+A+AR +++ ILLLDE SALD
Sbjct: 115 AQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLVREQPILLLDEPFSALDPA 163
Query: 273 SESIVQEALDRLM-----VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 326
+ E L + T ++V H + D V + G++ G+ +EL++
Sbjct: 164 ---LRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220
Query: 327 AGAYASLIRF 336
+ A+ +
Sbjct: 221 KAS-AAALLG 229
|
Length = 231 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (330), Expect = 9e-31
Identities = 83/253 (32%), Positives = 140/253 (55%), Gaps = 13/253 (5%)
Query: 98 GNIEFKNVTFSY-PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 156
G+I+F++V Y P P V+ S F + V VVG +G+GKS++++ + R +
Sbjct: 1233 GSIKFEDVHLRYRPGLPPVL--HGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK 1290
Query: 157 GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP--EATMAEVEAAASA 214
G +++D+ D+ L LR + ++ Q P LF+ T+ NI P E A++ A
Sbjct: 1291 GRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNI---DPFSEHNDADLWEALER 1347
Query: 215 ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274
A+ I P G +V E G S GQ+Q +++ARA+L+ KIL+LDEAT+++D ++
Sbjct: 1348 AHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTD 1407
Query: 275 SIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLI 334
S++Q + T +V+AHRL+TI + D + V+ GQV+E + +EL+++ +
Sbjct: 1408 SLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTS----- 1462
Query: 335 RFQEMVRNRDFAN 347
F MV + AN
Sbjct: 1463 AFFRMVHSTGPAN 1475
|
Length = 1495 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 9e-31
Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 48/218 (22%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IE +N++ Y + D S+ G+ ++G +G+GK+T++ +I P++G +
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAH 218
+ DIK R +IG + +EP+L+ T+ EN+
Sbjct: 58 KVLGKDIKKEPEEVKR-RIGYLPEEPSLYENLTVRENL---------------------- 94
Query: 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 278
+LSGG KQR+A+A+A+L +P++L+LDE TS LD S
Sbjct: 95 -------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 279 EALDRLMVGRTTVVVA-HRLSTIRNV-DTVAVIQQGQV 314
E L L T++++ H L + D VA++ G++
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 1e-30
Identities = 80/228 (35%), Positives = 116/228 (50%), Gaps = 14/228 (6%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IE +NV+ Y + S+ G+ ++G SG GK+T++ LI F P +G +
Sbjct: 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAH 218
LLD DI L + + V Q ALF T+ ENI +G + + E A A
Sbjct: 58 LLDGKDI--TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 278
+ L GY+ + QLSGGQ+QR+AIARA++ PK+LLLDE ALD +Q
Sbjct: 116 DLVQLE--GYA---NRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQ 170
Query: 279 EALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
L RL +G T V V H + D +AV+ +G++ + GT EE+
Sbjct: 171 LELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 1e-30
Identities = 75/217 (34%), Positives = 120/217 (55%), Gaps = 12/217 (5%)
Query: 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL---NLKSL 819
+ +L + AGQ ++GASG+GKS++I + PT+G V++DG+D+ L L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 820 RLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVG 878
R +IG++ Q L ++ ++F N+A E + + + V P
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPS- 139
Query: 879 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTV 936
LSGGQKQR+AIARA+ NP +LL DEATSALD + + E L+ + R G T +
Sbjct: 140 ----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTIL 195
Query: 937 LVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 972
L+ H + ++ + DC+ V+ +G ++EQG+ SE+ S P
Sbjct: 196 LITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHP 232
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 1e-30
Identities = 79/239 (33%), Positives = 128/239 (53%), Gaps = 15/239 (6%)
Query: 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG- 802
+I++R V+F Y V K+ N+ Q A++G SG GKS+++ + R D +G
Sbjct: 4 KIKIRGVNFFYHKHQ---VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 803 ----KVMIDGKDIRRLNLK--SLRLKIGLVQQEPALFAASIFDNIAYGKE--GATEAEVV 854
V++D ++I NL +LR ++G+V Q+P F SIFDN+A+G G T +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRL 120
Query: 855 EAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 914
+ ++ +AL + K + + G+ LSGGQ+QR+ IAR + P ++L+DE SAL
Sbjct: 121 DEVVEKSLRQ--AALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSAL 178
Query: 915 DAESECVLQEALERLMRGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
D S ++E ++ L + T +V H + R D G + G +VE G E+ SRP
Sbjct: 179 DPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRP 237
|
Length = 251 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 1e-30
Identities = 83/273 (30%), Positives = 131/273 (47%), Gaps = 33/273 (12%)
Query: 720 STLDRSTRIDPDDPDAEP-VETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQAL 778
+ +T D DP +P + IE R ++ Y D D ++ I Q A+
Sbjct: 14 GLITTTTATDTTDPSGDPAASSGETVIEARDLNVFYG---DEQALDDVSMDIPENQVTAM 70
Query: 779 VGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRRLNLK--SLRLKIGLVQQEPA 831
+G SG GKS+ + I R D G++ GK++ ++ +LR +IG+V Q+P
Sbjct: 71 IGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPN 130
Query: 832 LFAASIFDNIAYG-----KEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 886
F SI+DN+AYG +G + V E+ R A AL + K + G+ LSG
Sbjct: 131 PFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRA-------ALWDEVKDQLDSSGLDLSG 183
Query: 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH------ 940
GQ+QR+ IARA+ +P ++L+DE SALD + +++ +E L T V+V H
Sbjct: 184 GQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAA 243
Query: 941 RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPD 973
R+S V G G +VE ++ P+
Sbjct: 244 RISDKTAVFLTG----GELVEFDDTDKIFENPE 272
|
Length = 285 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 1e-30
Identities = 78/244 (31%), Positives = 122/244 (50%), Gaps = 25/244 (10%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----P 799
+E+R+++ Y D D ++RI + A +G SG GKS+++ R D
Sbjct: 26 LEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82
Query: 800 TAGKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG------KEGATEA 851
G++ +DG++I +++++ LR ++G+V Q P F SI++N+ YG
Sbjct: 83 IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLD 142
Query: 852 EVVEAA-RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 910
E VE + R A AL + K + E LSGGQ+QR+ IARA+ P +LLLDE
Sbjct: 143 EAVERSLRGA-------ALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEP 195
Query: 911 TSALDAESECVLQEALERLMRGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELV 969
TSALD S ++E + L T V+V H + R D + G++VE G L
Sbjct: 196 TSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF 255
Query: 970 SRPD 973
+ P
Sbjct: 256 TSPA 259
|
Length = 272 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-30
Identities = 73/248 (29%), Positives = 125/248 (50%), Gaps = 40/248 (16%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E +N++ YP+ ++ ++ G+ VA++G SG+GKST++ I R +P++G +
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 160 LLDNVDIKTLQ---LRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAA 215
LL+ DI L+ LR LR +IG++ Q L T+LEN+L+G+
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGR--------------L 105
Query: 216 NAHSFITLLPNGYS-----------TQVG------ERGVQLSGGQKQRIAIARAMLKNPK 258
L +S +VG +R QLSGGQ+QR+AIARA+ + P
Sbjct: 106 GYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPD 165
Query: 259 ILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVV 315
++L DE ++LD + V + L R+ G T ++ H++ + D + ++ G++V
Sbjct: 166 LILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225
Query: 316 ETGTHEEL 323
G EL
Sbjct: 226 FDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 3e-30
Identities = 75/240 (31%), Positives = 133/240 (55%), Gaps = 4/240 (1%)
Query: 743 GEIELRHVDFAYPSRPDVV-VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 801
G I+ V Y RP++ V + I + +VG +G+GKSS++ + R +
Sbjct: 1236 GSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 802 GKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAAN 861
G+++IDG DI + L LR +G++ Q P LF+ ++ N+ E +A++ E+ A+
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNE-HNDADLWESLERAH 1352
Query: 862 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 921
+ + V E G S GQ+Q +++ARA+L+ IL+LDEAT+A+D ++ +
Sbjct: 1353 LKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDAL 1412
Query: 922 LQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 981
+Q+ + + T +++AHRL+TI D I V+ GR+VE + L+S A+S+++Q
Sbjct: 1413 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQ 1472
|
Length = 1622 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 3e-30
Identities = 70/222 (31%), Positives = 108/222 (48%), Gaps = 46/222 (20%)
Query: 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 805
E+ ++ Y R V D +L I AG+ ++G +G+GKS+++ + P++G+++
Sbjct: 1 EVENLSVGYGGR---TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 806 IDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGF 865
+DGKD+ L+ K L KI V Q A +
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ---------------------------ALELLGLAHL 90
Query: 866 VSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 924
+R +LSGG++QR+ +ARA+ + P ILLLDE TS LD + L E
Sbjct: 91 A------------DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE 138
Query: 925 ALERLMR--GRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQG 963
L RL R G+T V+V H L+ R D + +++DGRIV QG
Sbjct: 139 LLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 3e-30
Identities = 80/276 (28%), Positives = 134/276 (48%), Gaps = 40/276 (14%)
Query: 729 DPDDPDAEPVETIRGEIELRHVDFAYPSRP--------DVVVFKDFNLRIRAGQSQALVG 780
P DA + +E+ + +P + + +L +R GQ+ LVG
Sbjct: 267 PPLPEDAPVL------LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVG 320
Query: 781 ASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSLRLKIGLVQQEPALFAA-- 835
SGSGKS++ + R P+ G++ DG+DI L+ ++ LR ++ +V Q+P + +
Sbjct: 321 ESGSGKSTLGLALLRL-IPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP--YGSLS 377
Query: 836 ---SIFDNIAYG----KEGATEAEVVEAARAANVH-GFVSALPNAYKTPVGERGVQLSGG 887
++ I G + + AE + A G A N Y + SGG
Sbjct: 378 PRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPH-------EFSGG 430
Query: 888 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTI 945
Q+QRIAIARA++ P ++LLDE TSALD + + + L L G + + ++H L+ +
Sbjct: 431 QRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVV 490
Query: 946 RGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 980
R + + V++DG+IVEQG + + P Y+R L
Sbjct: 491 RALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRAL 526
|
Length = 534 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 5e-30
Identities = 78/239 (32%), Positives = 119/239 (49%), Gaps = 32/239 (13%)
Query: 759 DVVVF-------KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMI 806
DV VF D +L I A +G SG GKS+ + + R D GK+ +
Sbjct: 24 DVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITL 83
Query: 807 DGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-------KEGATEAEVVEAA 857
DG+DI RL++ LR ++G+V Q+P F SI++N+AYG + A E+VE +
Sbjct: 84 DGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETS 143
Query: 858 --RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 915
+A L K + E G LSGGQ+QR+ IARA+ +P ++L+DE SALD
Sbjct: 144 LRKAG--------LWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195
Query: 916 AESECVLQEALERLMRGRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPD 973
+ ++E ++ L + T V+V H + R G +VE G ++ + PD
Sbjct: 196 PIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTNPD 254
|
Length = 267 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 6e-30
Identities = 79/228 (34%), Positives = 116/228 (50%), Gaps = 29/228 (12%)
Query: 765 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824
F+L + AG+ A++G SG+GKS+++ LI F P +G+++I+G D +
Sbjct: 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTAS--PPAERPVS 74
Query: 825 LVQQEPALFA-ASIFDNIAYG-----KEGATEAEVVE-AARAANVHGFVSALPNAYKTPV 877
++ QE LFA ++ NI G K A + E VE AA + GF+ LP
Sbjct: 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG------ 128
Query: 878 GERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD----AES-ECVLQEALERLMRG 932
+LSGGQ+QR+A+AR +++ ILLLDE SALD AE V Q E R
Sbjct: 129 -----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE---RK 180
Query: 933 RTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYSRL 979
T ++V H + D + + +GRI QGS EL+S A + L
Sbjct: 181 MTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKASAAALL 228
|
Length = 231 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 7e-30
Identities = 74/230 (32%), Positives = 117/230 (50%), Gaps = 13/230 (5%)
Query: 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
+I NV + + D S+ +G+ VA++G SG+GKST++ +I P+AG
Sbjct: 2 SIRINNVKKRFGAFG---ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR 58
Query: 159 VLLDNVDIKTLQLRWLRD-QIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAAN 216
+ L+ + + +RD ++G V Q ALF T+ +NI +G + A A
Sbjct: 59 IRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFG-LKVRKERPSEAEIRAR 117
Query: 217 AHSFITLLPNGYSTQVGER-GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 275
+ L+ + +R QLSGGQ+QR+A+ARA+ PK+LLLDE ALDA
Sbjct: 118 VEELLRLVQ---LEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 174
Query: 276 IVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEE 322
++ L +L +G TTV V H + D V V+ QG++ + G +E
Sbjct: 175 ELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE 224
|
Length = 345 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 1e-29
Identities = 71/205 (34%), Positives = 111/205 (54%), Gaps = 13/205 (6%)
Query: 128 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL---QLRWL-RDQIGLVNQ 183
G+ ++G SGSGKST V ++ R +P AG + +D +I +LR + R +IG+V Q
Sbjct: 19 GEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78
Query: 184 EPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG 242
+ ALF TIL+N G E E A + L Y + + +LSGG
Sbjct: 79 QFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGL--EEYEHRYPD---ELSGG 133
Query: 243 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRL-ST 299
+QR+ +ARA+ P ILL+DEA SALD +Q+ L +L + +T V + H L
Sbjct: 134 MQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEA 193
Query: 300 IRNVDTVAVIQQGQVVETGTHEELI 324
IR D + +++ G++V+ GT +E++
Sbjct: 194 IRIGDRIVIMKAGEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 1e-29
Identities = 68/235 (28%), Positives = 124/235 (52%), Gaps = 22/235 (9%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
I++ +V F+YP+ + K+ + I G+ A++G +GSGKS++ ++ P +G++
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE------GATEAEVVEA 856
IDG I + NLK +R KIG++ Q P A++ D+IA+G E + + +
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 857 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 916
A+ + ++ P LSGGQKQR+AIA + NP I++ DE+TS LD
Sbjct: 127 AKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 917 ESECVLQEALERLMRGRTTVLVA--HRLSTIRGVDCIGVVQDGRIVEQGSHSELV 969
+ + +++ + L + R L++ H + D + V +G+++ QG E++
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEIL 230
|
Length = 271 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 1e-29
Identities = 83/241 (34%), Positives = 122/241 (50%), Gaps = 26/241 (10%)
Query: 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
IE+R+V + D V D +L I +G+ AL+G SGSGK++++ LI P +G
Sbjct: 2 SIEVRNVSKRFG---DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT 58
Query: 804 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG------KEGATEAEVVEA 856
++ G+D + ++ +G V Q ALF ++FDN+A+G E EAE+
Sbjct: 59 ILFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEI--R 114
Query: 857 ARAANVHGFV--SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 914
A+ + V L + Y QLSGGQ+QR+A+ARA+ P +LLLDE AL
Sbjct: 115 AKVHELLKLVQLDWLADRYPA-------QLSGGQRQRVALARALAVEPKVLLLDEPFGAL 167
Query: 915 DAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSR 971
DA+ L+ L RL TTV V H V D + V+ GRI + G+ E+
Sbjct: 168 DAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227
Query: 972 P 972
P
Sbjct: 228 P 228
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 1e-29
Identities = 79/236 (33%), Positives = 120/236 (50%), Gaps = 26/236 (11%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IE +NV+ + + D S+ P+G+ VA++G SGSGK+T++ LI P++G +
Sbjct: 3 IEVRNVSKRFGDFVAL---DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG---KPEATMAEVEAAASAA 215
L D + ++ +G V Q ALF T+ +N+ +G KP + A A
Sbjct: 60 LFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPP--EAEIRA 115
Query: 216 NAHSFITL-----LPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALD 270
H + L L + Y Q LSGGQ+QR+A+ARA+ PK+LLLDE ALD
Sbjct: 116 KVHELLKLVQLDWLADRYPAQ-------LSGGQRQRVALARALAVEPKVLLLDEPFGALD 168
Query: 271 AGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
A ++ L RL + TTV V H V D V V+ +G++ + GT +E+
Sbjct: 169 AKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-29
Identities = 69/213 (32%), Positives = 106/213 (49%), Gaps = 20/213 (9%)
Query: 763 FKDFNLRIR---AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK---DIRR-LN 815
DF L+I + + GASG+GKS+++ I P G ++++G D R+ +N
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 816 LKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYK 874
L + KIGLV Q+ ALF ++ +N+A+G + E + + L
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDE------LLDLLGL-- 121
Query: 875 TPVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-- 931
+ R QLSGG+KQR+A+ARA+ P +LLLDE SALD L L+++ +
Sbjct: 122 DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNL 181
Query: 932 GRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQG 963
+ V H LS D I V++DGR+ G
Sbjct: 182 NIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-29
Identities = 68/196 (34%), Positives = 98/196 (50%), Gaps = 23/196 (11%)
Query: 754 YPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK--DI 811
YP P+V+ K N G+ AL+GA+G+GKS+++ + P +G V+IDG+ D
Sbjct: 1 YPGGPEVL--KGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 812 RRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYG------KEGATEAEVVEAARAANVH 863
R L R ++GLV Q+P LFAA + ++A+G E E V EA A
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS 118
Query: 864 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 923
G + LSGG+K+R+AIA AV P +LLLDE T+ LD +
Sbjct: 119 GLRERPTH-----------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQML 167
Query: 924 EALERLMRGRTTVLVA 939
L RL TV+++
Sbjct: 168 AILRRLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 2e-29
Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 32/244 (13%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+ELR + ++ V +L +R G+ AL+G +G+GKS+++ ++ Y P +G++
Sbjct: 9 LELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 805 MIDGKDIRRLNLK-SLRLKIGLVQQEPALFAA-SIFDNIAYGKEGAT------EAEVVEA 856
+IDGK + + + +L I V QE +L S+ +NI G+E +
Sbjct: 66 LIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR 125
Query: 857 ARA--ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 914
AR A + + T VG+ LS Q+Q + IARA+ + +L+LDE T+AL
Sbjct: 126 ARELLARLGLDIDP-----DTLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAAL 176
Query: 915 D-AESECVLQEALERLM-RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQG------SH 965
E+E + + + RL +G + ++HRL + + D I V++DGR+V S
Sbjct: 177 TVKETERLF-DLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSE 235
Query: 966 SELV 969
ELV
Sbjct: 236 DELV 239
|
Length = 500 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-29
Identities = 58/210 (27%), Positives = 102/210 (48%), Gaps = 36/210 (17%)
Query: 103 KNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD 162
KN++ + + +I D ++ GK A++G SGSGKST++++I ++G V L+
Sbjct: 2 KNISKKFGDK---VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLN 58
Query: 163 NVDIKTLQLR----WLRDQIGLVNQEPALFAT-TILENILYG-----KPEATMAEVEAAA 212
+ L + + R+++G + Q AL T+ EN+ G + E
Sbjct: 59 GQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKRE----- 113
Query: 213 SAANAHSFITLLPNGYSTQVG-----ERGV-QLSGGQKQRIAIARAMLKNPKILLLDEAT 266
+VG ++ + +LSGG++QR+A+ARA+LK P ++L DE T
Sbjct: 114 -----------KKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPT 162
Query: 267 SALDAGSESIVQEALDRLM-VGRTTVVVAH 295
+LD + V + L L G+T ++V H
Sbjct: 163 GSLDPKNRDEVLDLLLELNDEGKTIIIVTH 192
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 3e-29
Identities = 77/236 (32%), Positives = 123/236 (52%), Gaps = 17/236 (7%)
Query: 100 IEFKNVT-FSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
I+ N+T + + + S+ PAG+ V+G SG+GKST++ + P +G
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 159 VLLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASA 214
V++D D+ TL +L R QIG++ Q L ++ T+ N+ A E++
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNV------ALPLELDNT-PK 114
Query: 215 ANAHSFITLLPN--GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272
+T L G + LSGGQKQR+AIARA+ NPK+LL DEATSALD
Sbjct: 115 DEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
Query: 273 SESIVQEALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIA 325
+ + E L + +G T +++ H + ++ + D VAVI G+++E GT E+ +
Sbjct: 175 TTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 3e-29
Identities = 65/238 (27%), Positives = 103/238 (43%), Gaps = 55/238 (23%)
Query: 100 IEFKNVTFSYPSR------PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD 153
+E KN+ +P V S G+T+ +VG SG GKST+ LI +
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 154 PNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAAS 213
P +G +L + DI L R+++ + +V
Sbjct: 65 PTSGEILFEGKDITKLSKEERRERV-----------------------LELLEKVGLPEE 101
Query: 214 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 273
+ +LSGGQ+QRI IARA+ NPK+++ DE SALD
Sbjct: 102 FLYRYPH-----------------ELSGGQRQRIGIARALALNPKLIVADEPVSALDV-- 142
Query: 274 ESIVQEALDRLM-----VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIA 325
S+ + L+ L +G T + ++H LS +R + D +AV+ G++VE G EE+ +
Sbjct: 143 -SVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199
|
Length = 268 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 4e-29
Identities = 75/237 (31%), Positives = 116/237 (48%), Gaps = 29/237 (12%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
I F+NV+ +YP + RD S P G+ V + G SG+GKST++ LI P G +
Sbjct: 2 IRFENVSKAYPGGRE--ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 160 LLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILENILY-----GKPEATMAE-VE 209
L++ D+ L ++ +LR QIG+V Q+ L T+ EN+ GKP + V
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 210 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 269
LP+ QLSGG++QR+AIARA++ P +LL DE T L
Sbjct: 120 EVLDLVGLKHKARALPS-----------QLSGGEQQRVAIARAIVNQPAVLLADEPTGNL 168
Query: 270 D-AGSESIVQ--EALDRLMVGRTTVVVAHRLSTIRNVDT-VAVIQQGQVVETGTHEE 322
D S I++ E ++RL G T ++ H L + + V ++ G++V +
Sbjct: 169 DPDLSWEIMRLFEEINRL--GTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 4e-29
Identities = 65/215 (30%), Positives = 90/215 (41%), Gaps = 60/215 (27%)
Query: 101 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL 160
E +N++F Y R + S+ AG+ VA+VG +GSGKST++ I P +G +L
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 161 LDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSF 220
+D DI L L LR +IG V Q
Sbjct: 58 IDGKDIAKLPLEELRRRIGYVPQ------------------------------------- 80
Query: 221 ITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEA 280
S G+R Q+ +A RA+L NP +LLLDE TS LD S + E
Sbjct: 81 -------LSG--GQR-------QRVALA--RALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 281 LDRLMV-GRTTVVVAHRLSTIRNV-DTVAVIQQGQ 313
L L GRT ++V H D V V++ G+
Sbjct: 123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 4e-29
Identities = 77/229 (33%), Positives = 115/229 (50%), Gaps = 22/229 (9%)
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--PT---AGKVMIDGKDI-- 811
D + K+ NL I AL+G SG GKS+ I + R D P G + +DG DI
Sbjct: 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74
Query: 812 RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-------KEGATEAEVVEAARAANVHG 864
+++ LR K+G+V Q+P F SIFDN+AYG E E V E+ +AA
Sbjct: 75 PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAA---- 130
Query: 865 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 924
AL + K + + + LSGGQ+QR+ IAR + +P ++L+DE SALD S +++
Sbjct: 131 ---ALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIED 187
Query: 925 ALERLMRGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
+ +L T V+V H + R +G I+E G ++ P
Sbjct: 188 LIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINP 236
|
Length = 250 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 4e-29
Identities = 71/224 (31%), Positives = 116/224 (51%), Gaps = 20/224 (8%)
Query: 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDI--RRLN 815
D NL I + AL+G SG GKS+ + + R D G+V++DGK+I + ++
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 816 LKSLRLKIGLVQQEPALFAASIFDNIAYG------KEGATEAEVVEAARAANVHGFVSAL 869
+ LR ++G+V Q+P F SI+DN+AYG K+ ++VE A +AL
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKK------AAL 133
Query: 870 PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL 929
+ K + + ++LSGGQ+QR+ IAR + P ++L+DE TSALD S +++ + L
Sbjct: 134 WDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL 193
Query: 930 MRGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRP 972
+ T V+V H + R D G ++E ++ P
Sbjct: 194 KKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEP 237
|
Length = 251 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 9e-29
Identities = 68/259 (26%), Positives = 114/259 (44%), Gaps = 37/259 (14%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IE +N+T SY +RP + D S+ G+ A++G +G+GKST++ I P++G +
Sbjct: 5 IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPAL---FATTILE----------NILYGKPEATMA 206
+ ++ + + LR IG V Q+ ++ F T+ + +
Sbjct: 62 KIFGKPVRK-RRKRLR--IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118
Query: 207 EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEAT 266
+V+ A Q+GE LSGGQKQR+ +ARA+ +NP +LLLDE
Sbjct: 119 KVDEALERVGMEDLR-------DRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPF 167
Query: 267 SALDAGSESIVQEALDRL-MVGRTTVVVAHRLST-IRNVDTVAVIQQ-----GQVVETGT 319
+ +D + + + L L G+T ++V H L + D V + + G E T
Sbjct: 168 TGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLT 227
Query: 320 HEELIAKAGAYASLIRFQE 338
E L G +
Sbjct: 228 EENLEKAFGGSLAHALAGY 246
|
Length = 254 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 9e-29
Identities = 81/229 (35%), Positives = 126/229 (55%), Gaps = 25/229 (10%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL---- 819
KD +L I G+ ++G SGSGKS+++ L+ R +PT G+V+IDG DI +++ L
Sbjct: 45 KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVR 104
Query: 820 RLKIGLVQQEPALFA-ASIFDNIAYGKE--GATEAE----VVEAARAANVHGFVSALPNA 872
R KI +V Q AL ++ DN A+G E G E ++A R + + + P+
Sbjct: 105 RKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD- 163
Query: 873 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-- 930
+LSGG +QR+ +ARA+ NP ILL+DEA SALD +Q+ L +L
Sbjct: 164 ----------ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK 213
Query: 931 RGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 978
RT V ++H L +R D I ++Q+G +V+ G+ E+++ P Y R
Sbjct: 214 HQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVR 262
|
Length = 400 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 1e-28
Identities = 73/236 (30%), Positives = 114/236 (48%), Gaps = 30/236 (12%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E KNV S+ + +D ++ G+ V ++G SG GKST++ +I +P +G +
Sbjct: 4 LELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYG------KPEATMAEVEAAA 212
L+D D+ L R I +V Q AL+ T+ ENI +G V+ A
Sbjct: 61 LIDGRDVTDLP-PEKRG-IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118
Query: 213 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272
+ P QLSGGQ+QR+A+ARA+++ PK+ LLDE S LDA
Sbjct: 119 KLLGLEHLLNRKPL-----------QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
Query: 273 SE----SIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
S +++ +RL G TT+ V H + D + V+ G++ + GT EL
Sbjct: 168 LRVLMRSEIKKLHERL--GTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221
|
Length = 338 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 1e-28
Identities = 72/255 (28%), Positives = 116/255 (45%), Gaps = 43/255 (16%)
Query: 100 IEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA-- 156
+E +N+T + + V RD S G+ + +VG SGSGKST+ +
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 157 --GHVLLDNVDIKTL---QLRWLR-DQIGLVNQEP-ALF--ATTILENI-----LYGKPE 202
G V+LD D+ L ++R LR +I ++ Q+P TI + I L+GK
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 203 ATMAEVEAAA--------SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254
A A + P+ QLSGG +QR+ IA A+
Sbjct: 126 RAEARKRAVELLEQVGLPDPERRDRY----PH-----------QLSGGMRQRVMIAMALA 170
Query: 255 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNV-DTVAVIQQ 311
PK+L+ DE T+ALD +++ + + L L G + + H L + + D V V+ +
Sbjct: 171 LKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYK 230
Query: 312 GQVVETGTHEELIAK 326
G++VETG EE+++
Sbjct: 231 GEIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 1e-28
Identities = 72/248 (29%), Positives = 112/248 (45%), Gaps = 55/248 (22%)
Query: 745 IELRHVDFAYPSR------PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD 798
+E++++ +P V + I+ G++ LVG SG GKS++ LI +
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 799 PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAAR 858
PT+G+++ +GKDI +L+ KE E V+E
Sbjct: 65 PTSGEILFEGKDITKLS-----------------------------KEERRE-RVLELLE 94
Query: 859 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 918
+ Y+ P +LSGGQ+QRI IARA+ NP +++ DE SALD
Sbjct: 95 KVGLPEEF-----LYRYPH-----ELSGGQRQRIGIARALALNPKLIVADEPVSALDVS- 143
Query: 919 ECVLQEALERLM-----RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 972
V + L L G T + ++H LS +R + D I V+ G+IVE G E+ S P
Sbjct: 144 --VQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNP 201
Query: 973 DGAYSRLL 980
Y++ L
Sbjct: 202 LHPYTKAL 209
|
Length = 268 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 2e-28
Identities = 72/226 (31%), Positives = 111/226 (49%), Gaps = 22/226 (9%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA-----GKVMIDGKDIRR--LNL 816
K +++ + AL+G SGSGKS+ + + R D G+++ G DI R +N+
Sbjct: 37 KGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96
Query: 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEA------EVVEAA-RAANVHGFVSAL 869
+R IG+V Q P FA SI++NI + E A E+VE + + A AL
Sbjct: 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQA-------AL 149
Query: 870 PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL 929
+ K + + + LSGGQ+QR+ IARA+ P ILL+DE SALD S L+E + L
Sbjct: 150 WDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL 209
Query: 930 MRGRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPDG 974
+ T ++V H + R D G ++E + + P
Sbjct: 210 KKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTNPKL 255
|
Length = 267 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-28
Identities = 82/244 (33%), Positives = 128/244 (52%), Gaps = 25/244 (10%)
Query: 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--PTA 801
++E R + F Y D D +L Q AL+G SG GKS+ + + R D P A
Sbjct: 6 KMEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGA 62
Query: 802 ---GKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG------KEGATE 850
G++++DG++I +++ LR ++G+V Q+P F SIF+N+AYG K+ A
Sbjct: 63 RVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYL 122
Query: 851 AEVVEAA-RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 909
AE VE + R A AL + K + E + LSGGQ+QR+ IARA+ P +LL+DE
Sbjct: 123 AERVERSLRHA-------ALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDE 175
Query: 910 ATSALDAESECVLQEALERLMRGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSEL 968
SALD + ++E + L T ++V H + R D G+++E G ++
Sbjct: 176 PASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235
Query: 969 VSRP 972
+RP
Sbjct: 236 FTRP 239
|
Length = 253 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 2e-28
Identities = 68/205 (33%), Positives = 109/205 (53%), Gaps = 23/205 (11%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE +V YP N+ I AG+ LVG SG+GKS+++ LI + PT+G +
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 805 MIDGKDIRRLNLKS---LRLKIGLVQQEPALFAA-SIFDNIAYGKE--GATEAE----VV 854
++G+D+ L ++ LR KIG+V Q+ L ++++N+A+ E G E V
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 855 EAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 914
A + ALP +LSGG++QR+AIARA++ +P IL+ DE T L
Sbjct: 119 AALELVGLSHKHRALPA-----------ELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167
Query: 915 DAESECVLQEALERLMRGRTTVLVA 939
D ++ + L+++ + TTV+VA
Sbjct: 168 DPDTTWEIMNLLKKINKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-28
Identities = 76/244 (31%), Positives = 127/244 (52%), Gaps = 17/244 (6%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE++++ F Y + D + ++ G+ +++G +GSGKS+ + LI+ + +G++
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEAEVVEAARAA 860
+IDG + N+ +R KIG+V Q P A++ D++A+G E G E+ E R
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKE--RVN 122
Query: 861 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 920
V + P +LSGGQKQR+AIA AV P I++LDEATS LD E
Sbjct: 123 EALELVGMQDFKEREP-----ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRL 177
Query: 921 VLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 978
L + ++ + T + + H L + D + V+++G++ + EL SR +
Sbjct: 178 ELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGN----D 233
Query: 979 LLQL 982
LLQL
Sbjct: 234 LLQL 237
|
Length = 279 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 3e-28
Identities = 76/255 (29%), Positives = 119/255 (46%), Gaps = 25/255 (9%)
Query: 87 PTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVS 146
+ I+ +N+ F Y ++ ++ + A +G SG GKST++
Sbjct: 1 AAMMSMVATAPSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLR 57
Query: 147 LIERFYD--PN---AGHVLLDNVDIKT--LQLRWLRDQIGLVNQEPALFATTILENILYG 199
R Y+ P G +LLD +I T + LR ++G+V Q+P F +I +NI +G
Sbjct: 58 TFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFG 117
Query: 200 K------PEATMAE-VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252
A M E VE A + A L N ++ + G LSGGQ+QR+ IAR
Sbjct: 118 VRLFEKLSRAEMDERVEWALTKA-------ALWNEVKDKLHQSGYSLSGGQQQRLCIARG 170
Query: 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRL-STIRNVDTVAVIQQ 311
+ P++LLLDE SALD S ++E + L T V+V H + R D A +
Sbjct: 171 IAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYL 230
Query: 312 GQVVETGTHEELIAK 326
G+++E G + + K
Sbjct: 231 GELIEFGNTDTIFTK 245
|
Length = 260 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 3e-28
Identities = 68/223 (30%), Positives = 116/223 (52%), Gaps = 20/223 (8%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIR--RLNL 816
D + I + AL+G SG GKS+++ R D G ++ +G++I ++
Sbjct: 23 YDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82
Query: 817 KSLRLKIGLVQQEPALFAASIFDNIAYG------KEGATEAEVVEAARAANVHGFVSALP 870
+LR KIG+V Q P F SI++N+AYG K T +VE + + G +AL
Sbjct: 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKS----LKG--AALW 136
Query: 871 NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM 930
+ K + + + LSGGQ+QR+ IAR + NP ++L+DE SALD + +++ +E L
Sbjct: 137 DEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLK 196
Query: 931 RGRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
+ T ++V H + R D G + G+++E +++ P
Sbjct: 197 KEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENP 239
|
Length = 253 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 4e-28
Identities = 67/197 (34%), Positives = 100/197 (50%), Gaps = 29/197 (14%)
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSS---VIALIERFYDPTAGKVMIDGKDIRRLN 815
D V+ D NL I G+ A++G SGSGKS+ +I L+E+F G+V ++G++ LN
Sbjct: 10 DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDS---GQVYLNGQETPPLN 66
Query: 816 LKS----LRLKIGLVQQEPALF-AASIFDNI----AYGKEGATEAE--VVEAARAANVHG 864
K R K+G + Q AL ++ +N+ Y K E EA
Sbjct: 67 SKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVG--- 123
Query: 865 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE-SECVLQ 923
L K + E LSGG++QR+A+ARA+LK P ++L DE T +LD + + VL
Sbjct: 124 ----LNLKLKQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLD 175
Query: 924 EALERLMRGRTTVLVAH 940
LE G+T ++V H
Sbjct: 176 LLLELNDEGKTIIIVTH 192
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 4e-28
Identities = 77/224 (34%), Positives = 114/224 (50%), Gaps = 22/224 (9%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDI--RRLNL 816
K N I + A++G SG GKS+ + I R D T G +M DG+DI + +
Sbjct: 56 KKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115
Query: 817 KSLRLKIGLVQQEPALFAASIFDNIAYG------KEGATEAEVVEAA-RAANVHGFVSAL 869
LR KIG+V Q+P F SIFDNIAYG + E+VE + R A AL
Sbjct: 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKA-------AL 168
Query: 870 PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL 929
+ + + + LSGGQ+QR+ +AR + P ILLLDE TSALD ++ +++ ++ L
Sbjct: 169 WDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL 228
Query: 930 MRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 972
T ++V H + V D +G +VE ++L + P
Sbjct: 229 RGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNP 272
|
Length = 286 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 6e-28
Identities = 73/242 (30%), Positives = 130/242 (53%), Gaps = 28/242 (11%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+E+ ++ YP+ K+ NL I G+ A++G SG+GKS+++ I R +P++G +
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 805 MIDGKDIRRLN---LKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGA-----------T 849
+++G DI +L L+ LR +IG++ Q L ++ +N+ +G+ G +
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 850 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 909
E + A A V AY+ R QLSGGQ+QR+AIARA+ + P ++L DE
Sbjct: 120 EEDKERALSALER---VGLADKAYQ-----RADQLSGGQQQRVAIARALAQQPDLILADE 171
Query: 910 ATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHS 966
++LD ++ + + L+R+ + G T ++ H++ + D I ++ G IV G+ S
Sbjct: 172 PIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231
Query: 967 EL 968
EL
Sbjct: 232 EL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 7e-28
Identities = 74/234 (31%), Positives = 110/234 (47%), Gaps = 26/234 (11%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IE N++ + D ++ P G VA++G SGSGKST++ +I P++G +
Sbjct: 1 IEIANISKRFG---SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI 57
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG------KPEATMAEVEAAA 212
L+ D + R +IG V Q ALF T+ +NI +G A VE
Sbjct: 58 RLNGQDATRVHAR--DRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELL 115
Query: 213 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272
PN QLSGGQ+QR+A+ARA+ P++LLLDE ALDA
Sbjct: 116 ELVQLEGLGDRYPN-----------QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164
Query: 273 SESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
++ L +L V TTV V H V D + V+ G++ + G+ +E+
Sbjct: 165 VRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 7e-28
Identities = 73/214 (34%), Positives = 116/214 (54%), Gaps = 16/214 (7%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI--RRLNLKSLRL 821
+ N+ I G+ L+G +GSGKS++I + PT+GK++IDG DI +++ L +R
Sbjct: 24 DNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRK 83
Query: 822 KIGLVQQEP--ALFAASIFDNIAYGKE--GATEAEVVEAARAA-NVHGFVSALPNAYKTP 876
K+GLV Q P LF +I +IA+G G +E E+ + A N+ G Y+
Sbjct: 84 KVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGL------DYEDY 137
Query: 877 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRT 934
+ +LSGGQK+R+AIA V P IL+LDE T+ LD + + ++ L + T
Sbjct: 138 KDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMT 197
Query: 935 TVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSE 967
+LV+H + + + D I V+ G+ QG+ E
Sbjct: 198 IILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
Length = 287 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 9e-28
Identities = 78/241 (32%), Positives = 120/241 (49%), Gaps = 21/241 (8%)
Query: 100 IEFKNVTFSY----PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 155
I F NV+++Y P I D + F GK A+VG +GSGKST++ I P
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAI--HDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT 60
Query: 156 AGHVLLDNVDI----KTLQLRWLRDQIGLVNQ--EPALFATTILENILYGKPEATMAEVE 209
G V +D++ I K +R +R +IG+V Q E LF T+ I++G M E
Sbjct: 61 TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDE 120
Query: 210 AAASAANAHSFITLLPNGYSTQVGERG-VQLSGGQKQRIAIARAMLKNPKILLLDEATSA 268
A L+ G+S V + Q+SGGQ ++IAI + NP I++LDE T+
Sbjct: 121 VKNYA-----HRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAG 175
Query: 269 LDAGSESIVQEALDRLMV--GRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEELIA 325
LD S+ V L L +T ++V+H ++ + R D V V+++G +V + +EL
Sbjct: 176 LDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235
Query: 326 K 326
Sbjct: 236 D 236
|
Length = 286 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-27
Identities = 77/249 (30%), Positives = 117/249 (46%), Gaps = 33/249 (13%)
Query: 97 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--P 154
G I K++ Y D + ++ + A++G SG GKST + + R D P
Sbjct: 1 MGKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIP 57
Query: 155 NA---GHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYG------KPEA 203
+ G VLLD DI + + LR ++G+V Q+P F +I +N+ YG K +
Sbjct: 58 SVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKK 117
Query: 204 TMAE-VEAAASAANAHSFITLLPNGYSTQVGER----GVQLSGGQKQRIAIARAMLKNPK 258
+ E VE + A +V +R + LSGGQ+QR+ IARA+ P+
Sbjct: 118 KLDEIVEKSLKGA-----------ALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPE 166
Query: 259 ILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRL-STIRNVDTVAVIQQGQVVET 317
+LL+DE TSALD S ++E + L T V+V H + R D A G++VE
Sbjct: 167 VLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEF 226
Query: 318 GTHEELIAK 326
G +L
Sbjct: 227 GDTVDLFTN 235
|
Length = 250 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 1e-27
Identities = 77/253 (30%), Positives = 129/253 (50%), Gaps = 29/253 (11%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE ++V + V + +L I G+ ++G SGSGKS+++ I + + T+G +
Sbjct: 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 805 MIDGKDIR--RLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYGK---EGATEAEVVEAAR 858
++DG + +++ + +R + G+V Q+ LF + +N+ +G GA++ E + AR
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQAR 118
Query: 859 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 918
++ + Y + +LSGGQ+QR+AIARA+ P ++L DE TSALD E
Sbjct: 119 ELLAKVGLAERAHHYPS-------ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE- 170
Query: 919 ECVLQEALERLMR-----GRTTVLVAHRLSTIRGVDCIGVVQD-GRIVEQGSHSELVSRP 972
+ E L ++M+ G T V+V H + V + D GRI E G L+ P
Sbjct: 171 --LRHEVL-KVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227
Query: 973 DGAYSRLLQ-LQH 984
RL + LQH
Sbjct: 228 PSQ--RLQEFLQH 238
|
Length = 240 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 115 bits (288), Expect = 2e-27
Identities = 78/246 (31%), Positives = 115/246 (46%), Gaps = 18/246 (7%)
Query: 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP--T 800
G I + H+ AY + V D +L I AG+ AL+G SG GK++++ I F
Sbjct: 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60
Query: 801 AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARA 859
G++ I +D+ + + + L+ Q ALF + DN+A+G + A R
Sbjct: 61 TGRIAIADRDLT--HAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERV 118
Query: 860 ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 919
A+ V A P QLSGG +QRIAIARA+ P +LLLDE SALDA
Sbjct: 119 ADALKLVGLGDAAAHLPA-----QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIR 173
Query: 920 CVLQEALERLMR---GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP-DG 974
++E + L T + V H + + D G+++DGR+ G L P DG
Sbjct: 174 ANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADG 233
Query: 975 AYSRLL 980
+ L
Sbjct: 234 FAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-27
Identities = 78/256 (30%), Positives = 130/256 (50%), Gaps = 30/256 (11%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+E R + ++YP K N + G+ AL+G +G+GKS++ PT+G+V
Sbjct: 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 805 MIDGKDIRRLNLKSL---RLKIGLVQQEP--ALFAASIFDNIAYG------KEGATEAEV 853
+I G+ I+ KSL R +G+V Q P LFA ++ +++A+G + E V
Sbjct: 60 LIKGEPIKYDK-KSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRV 118
Query: 854 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 913
EA +A + GF + P+ LSGGQK+R+AIA + P I++LDE TS
Sbjct: 119 KEALKAVGMEGFENKPPH-----------HLSGGQKKRVAIAGILAMKPEIIVLDEPTSG 167
Query: 914 LDAESECVLQEALERLMR-GRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSR 971
LD + + L L + G T ++ H + + D + V+ DG+I+++G+ E+ S
Sbjct: 168 LDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227
Query: 972 PD---GAYSRLLQLQH 984
+ A RL ++ H
Sbjct: 228 IETIRKANLRLPRVAH 243
|
Length = 275 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 3e-27
Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA-GH 158
I KN FS+ S+ + + ++ P G VA+VG +G GK++++S + P +
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAS 674
Query: 159 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP-EATMAEVEAAASAANA 217
V++ R + V Q +F T+ +NIL+G P + E A
Sbjct: 675 VVI-------------RGTVAYVPQVSWIFNATVRDNILFGSPFDP--ERYERAIDVTAL 719
Query: 218 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-SESI 276
+ LLP G T++GERGV +SGGQKQR+++ARA+ N + + D+ SALDA +
Sbjct: 720 QHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQV 779
Query: 277 VQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325
+ + + G+T V+V ++L + VD + ++ +G + E GT+EEL
Sbjct: 780 FDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828
|
Length = 1622 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 3e-27
Identities = 53/129 (41%), Positives = 71/129 (55%), Gaps = 13/129 (10%)
Query: 142 STVVSLIERFYDPNAGHVLLDNVDIKTL-QLRWLRDQIGLVNQEPALFAT-TILENILYG 199
ST++ LI P +G +LLD D L + LR +IG+V Q+P LF T+ EN+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 200 -KPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258
+ + A E A F+ P G LSGGQKQR+AIARA+LK PK
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVG----------TLSGGQKQRVAIARALLKKPK 110
Query: 259 ILLLDEATS 267
+LLLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 4e-27
Identities = 72/216 (33%), Positives = 114/216 (52%), Gaps = 26/216 (12%)
Query: 127 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL-------------QLRW 173
AG ++++G SGSGKST + I P+AG + ++ +I+ QL+
Sbjct: 31 AGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQR 90
Query: 174 LRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQV 232
LR ++G+V Q L++ T+LEN++ EA + + + + A + L G + +
Sbjct: 91 LRTRLGMVFQHFNLWSHMTVLENVI----EAPVHVLGVSKAEAIERAEKYLAKVGIAEKA 146
Query: 233 GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL----DRLMVGR 288
LSGGQ+QR+AIARA+ P+++L DE TSALD +V E L D GR
Sbjct: 147 DAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDP---ELVGEVLKVMQDLAEEGR 203
Query: 289 TTVVVAHRLSTIRNVDT-VAVIQQGQVVETGTHEEL 323
T VVV H + R+V + V + QG++ E G E++
Sbjct: 204 TMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQV 239
|
Length = 256 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 4e-27
Identities = 74/261 (28%), Positives = 118/261 (45%), Gaps = 44/261 (16%)
Query: 749 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIAL-IERFYDP-----TAG 802
V F + V + ++ G+ +VG SGSGKS V+A I G
Sbjct: 8 SVSFPTDAGVVKAV-DGVSFELKKGEILGIVGESGSGKS-VLAKAIMGLLPKPNARIVGG 65
Query: 803 KVMIDGKDIRRLNLKSLRL----KIGLVQQEPALFAAS----------IFDNIAYGKEGA 848
+++ DGKD+ L+ K LR +I ++ Q+P S I + + +G
Sbjct: 66 EILFDGKDLLSLSEKELRKIRGKEIAMIFQDPM---TSLNPVMTIGDQIAEVLRLHGKGL 122
Query: 849 TEAEVVEAARAA--NVHGFVSALPNAYKT----PVGERGVQLSGGQKQRIAIARAVLKNP 902
++ E E A V +P+ + P +LSGG +QR+ IA A+ NP
Sbjct: 123 SKKEAKERAIELLELVG-----IPDPERRLKSYPH-----ELSGGMRQRVMIAMALALNP 172
Query: 903 AILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRI 959
+L+ DE T+ALD + + + L+ L R G +L+ H L + + D + V+ GRI
Sbjct: 173 KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRI 232
Query: 960 VEQGSHSELVSRPDGAYSRLL 980
VE+G E+ P Y+R L
Sbjct: 233 VEEGPVEEIFKNPKHPYTRGL 253
|
Length = 316 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 5e-27
Identities = 79/216 (36%), Positives = 121/216 (56%), Gaps = 17/216 (7%)
Query: 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL---QLRWLR 175
+D S+ G+ ++G SGSGKST+V L+ R +P G VL+D VDI + +LR +R
Sbjct: 45 KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVR 104
Query: 176 -DQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITL--LPNGYSTQ 231
+I +V Q AL T+L+N +G A + E A +A + L + Y +
Sbjct: 105 RKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDE 164
Query: 232 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG--RT 289
LSGG +QR+ +ARA+ NP ILL+DEA SALD + +Q+ L +L RT
Sbjct: 165 -------LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRT 217
Query: 290 TVVVAHRL-STIRNVDTVAVIQQGQVVETGTHEELI 324
V ++H L +R D +A++Q G+VV+ GT +E++
Sbjct: 218 IVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 6e-27
Identities = 75/235 (31%), Positives = 120/235 (51%), Gaps = 22/235 (9%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IEFKNV+ + + + + G+ V ++G SGSGKST++ I + + +G +
Sbjct: 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 160 LLDNVDIK--TLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAAN 216
++D + + + R +R + G+V Q+ LF T LEN+++G A E A A
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQAR 118
Query: 217 AHSFITLLPN-GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 275
LL G + + +LSGGQ+QR+AIARA+ PK++L DE TSALD
Sbjct: 119 E-----LLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDP---E 170
Query: 276 IVQEALDRLMV-----GRTTVVVAHRLSTIRNVDT-VAVIQQGQVVETGTHEELI 324
+ E L ++M G T V+V H + V + + I +G++ E G + LI
Sbjct: 171 LRHEVL-KVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224
|
Length = 240 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 8e-27
Identities = 74/242 (30%), Positives = 123/242 (50%), Gaps = 23/242 (9%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--PTA- 801
+E++ + Y + V D ++ I AL+G SG GKS+ + I R D P+A
Sbjct: 22 LEVKDLSIYYGEKRAV---NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR 78
Query: 802 --GKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEA------ 851
G+++ +G +I +N+ +LR +IG+V Q+P F SI++NI + + A E
Sbjct: 79 SEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLD 138
Query: 852 EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT 911
E+VE + +AL + K + + LSGGQ+QR+ IAR + PA+LLLDE
Sbjct: 139 EIVEESLTK------AALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPA 192
Query: 912 SALDAESECVLQEALERLMRGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVS 970
SALD S ++E + L + ++V H + +R D +G +VE ++ +
Sbjct: 193 SALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFT 252
Query: 971 RP 972
P
Sbjct: 253 SP 254
|
Length = 268 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-26
Identities = 81/240 (33%), Positives = 116/240 (48%), Gaps = 27/240 (11%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IE KN+TF Y + D S G+ ++++G +GSGKST V LI+ + +G +
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 160 LLDNVDIKTLQLRW-LRDQIGLVNQEP--ALFATTI-------LENILYGKPEATMAE-V 208
++D D+ T + W +R +IG+V Q P T+ LEN G P M E V
Sbjct: 65 IIDG-DLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLEN--KGIPHEEMKERV 121
Query: 209 EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSA 268
A F P +LSGGQKQR+AIA A+ PKI++LDEATS
Sbjct: 122 NEALELVGMQDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSM 170
Query: 269 LD-AGSESIVQEALD-RLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326
LD G +++ R T + + H L + D V V++ GQV T T EL ++
Sbjct: 171 LDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230
|
Length = 279 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 11/232 (4%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E ++T SY S+ V RD S G+ ++G +G+GK+T++ +I P++G V
Sbjct: 2 LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAH 218
+D VD ++R +IG++ E L+A T EN+ Y ++ E A A
Sbjct: 60 TIDGVDTVR-DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118
Query: 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 278
+ LL +VGE S G KQ++AIARA++ +P IL+LDE TS LD +
Sbjct: 119 KRLQLL-EYLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173
Query: 279 EALDRLM-VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAKAG 328
+ + +L GR + +H + + + D V V+ +G+VV G+ E L A+
Sbjct: 174 DFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTV 225
|
Length = 245 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 1e-26
Identities = 55/227 (24%), Positives = 110/227 (48%), Gaps = 24/227 (10%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
++L ++ Y + +L + G L+G +G+GK++++ ++ P++G +
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAY-----GKEGATE-AEVVEAA 857
IDG+D+ + + LR +IG + QE ++ ++ + + Y G A V E
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115
Query: 858 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 917
N+ K +G LSGG ++R+ IA+A++ +P+IL++DE T+ LD E
Sbjct: 116 ELVNLGDR-------AKKKIG----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164
Query: 918 SECVLQEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQG 963
+ L L R +L H + + + + + V+ G++V +G
Sbjct: 165 ERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 75/225 (33%), Positives = 112/225 (49%), Gaps = 20/225 (8%)
Query: 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT-----AGKVMIDGKDI--RRLN 815
K+ NL I + A++G SG GKS+ I + G++ +G +I +++
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 816 LKSLRLKIGLVQQEPALFAASIFDNIAYG------KEGATEAEVVEAARAANVHGFVSAL 869
L LR IG+V Q+ F SIFDN+AYG K E+VE + AL
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKD------VAL 141
Query: 870 PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL 929
+ K + + + LSGGQ+QR+ IARA+ NP +LL+DE TSALD S ++E + +L
Sbjct: 142 WDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL 201
Query: 930 MRGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVSRPD 973
T V+V H + R D G +VE +++ S PD
Sbjct: 202 KEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPD 246
|
Length = 259 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 117 bits (293), Expect = 2e-26
Identities = 55/109 (50%), Positives = 81/109 (74%), Gaps = 2/109 (1%)
Query: 850 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 909
++EVV+ ++ +H FVSALP+ Y+T VG +LSGGQKQRI+IARA+++NP IL+LDE
Sbjct: 546 DSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDE 605
Query: 910 ATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQD 956
ATS+LD +SE ++Q+ + L R T+++AHRLSTIR + I V+ +
Sbjct: 606 ATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654
|
Length = 1466 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 2e-26
Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 27/243 (11%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PN-- 155
IE +N + Y + + IF + A++G SG GK+T++ I R D P
Sbjct: 4 IEIENFSAYYGEK-KAVKNVTMKIF--KNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 156 -AGHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYG------KPEATMA 206
G + DI L + R ++G+V Q+P F +I +N+ +G K + +
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 207 EV--EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE 264
+ E+ AA L + +++ + G +LSGGQ+QR+ IARA+ P+++LLDE
Sbjct: 121 RIVEESLKKAA--------LWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDE 172
Query: 265 ATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEEL 323
TSALD + +++ L+ L T V+V H + IR D +A + +G+++E G E+
Sbjct: 173 PTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232
Query: 324 IAK 326
+ +
Sbjct: 233 VER 235
|
Length = 250 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 2e-26
Identities = 70/199 (35%), Positives = 107/199 (53%), Gaps = 19/199 (9%)
Query: 133 VVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TT 191
++G SG GK+T++ L+ F P++G ++LD D+ T LR I +V Q ALF T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV-TNVPPHLR-HINMVFQSYALFPHMT 58
Query: 192 ILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERG----VQLSGGQKQRI 247
+ EN+ +G M +V A + L+ Q+ E QLSGGQ+QR+
Sbjct: 59 VEENVAFG---LKMRKVPRAEIKPRVLEALRLV------QLEEFADRKPHQLSGGQQQRV 109
Query: 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLS-TIRNVD 304
A+ARA++ PKILLLDE SALD +Q L + +G T V V H + D
Sbjct: 110 ALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSD 169
Query: 305 TVAVIQQGQVVETGTHEEL 323
+A++++G++ + GT EE+
Sbjct: 170 RIAIMRKGKIAQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-26
Identities = 77/216 (35%), Positives = 108/216 (50%), Gaps = 26/216 (12%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IEF NV+ +YP V D S+ G+ + + G SG+GK+T++ L+ P+ G V
Sbjct: 2 IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 160 LLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILENI-----LYGKPEATMAE-VE 209
+ D+ L QL LR +IG+V Q+ L T+ EN+ + GK E + V
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 210 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 269
AA P QLSGG++QR+AIARA++ +P +LL DE T L
Sbjct: 120 AALRQVGLEHKADAFP-----------EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168
Query: 270 DAG-SESIVQEALDRLMVGRTTVVVA-HRLSTIRNV 303
D SE I+ L RL TTV+VA H LS + V
Sbjct: 169 DPDLSERILD-LLKRLNKRGTTVIVATHDLSLVDRV 203
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 2e-26
Identities = 78/228 (34%), Positives = 110/228 (48%), Gaps = 20/228 (8%)
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR 813
D + N++I AL+G SG GKS+ + + R D G V+ +GK+I
Sbjct: 19 DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS 78
Query: 814 LNLK--SLRLKIGLVQQEPALFAASIFDNIAYG------KEGATEAEVVEAARAANVHGF 865
N LR KIG+V Q P F SI+DNI+YG K+ E+VE +
Sbjct: 79 NNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKK----- 133
Query: 866 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEA 925
SAL N K + + LSGGQ+QR+ IAR + P ++L+DE TSALD S ++E
Sbjct: 134 -SALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEEL 192
Query: 926 LERLMRGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRP 972
+ L T ++V H + R D +G I E+ S EL P
Sbjct: 193 IINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNP 240
|
Length = 254 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 2e-26
Identities = 70/212 (33%), Positives = 111/212 (52%), Gaps = 31/212 (14%)
Query: 766 FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 825
F+L + G+ A++G SG+GKS+++ LI F +P +G + ++ + L + + +
Sbjct: 17 FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL--APYQRPVSM 74
Query: 826 VQQEPALFA-ASIFDNIAYG-----KEGATEAE-VVEAARAANVHGFVSALPNAYKTPVG 878
+ QE LFA ++ NI G K A + E VV+AA+ + ++ LP
Sbjct: 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE------- 127
Query: 879 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM------RG 932
QLSGGQ+QR+A+AR +++ ILLLDE SALD +L+E + L+ R
Sbjct: 128 ----QLSGGQRQRVALARCLVRPNPILLLDEPFSALDP----LLREEMLALVKQLCSERQ 179
Query: 933 RTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQG 963
RT ++V H LS R + I VV G+I
Sbjct: 180 RTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 2e-26
Identities = 70/219 (31%), Positives = 114/219 (52%), Gaps = 12/219 (5%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDI--RRLNL 816
+L + AL+G SGSGKS+++ I R D G ++ +G +I R +
Sbjct: 22 NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81
Query: 817 KSLRLKIGLVQQEPALFAASIFDNIAYGK--EGATEAEVVEAARAANVHGFVSALPNAYK 874
LR +IG+V Q+P F SI++N+ YG +G + +V++ A ++ G +++ + K
Sbjct: 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKG--ASIWDEVK 139
Query: 875 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRT 934
+ + + LSGGQ+QR+ IAR + +P I+LLDE TSALD S ++E L L T
Sbjct: 140 DRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYT 199
Query: 935 TVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRP 972
+LV + R D G DG ++E ++ P
Sbjct: 200 MLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNP 238
|
Length = 252 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-26
Identities = 69/207 (33%), Positives = 114/207 (55%), Gaps = 12/207 (5%)
Query: 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PT 800
E+R+ +F Y +R V+ D NL I+ + A +G SG GKS+ + + + D
Sbjct: 82 EIRNFNFWYMNRTKHVL-HDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 801 AGKVMIDGKDIRRLNLKSL--RLKIGLVQQEPALFAASIFDNIAYG--KEGATEAEVVEA 856
G++ G + R + SL R +IG+V Q+P F SIFDN+AYG G + +++E
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200
Query: 857 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 916
++ +AL + K + + G LSGGQ+QR+ IARA+ P +LL+DE TSALD
Sbjct: 201 IVEKSLKS--AALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDP 258
Query: 917 ESECVLQEALERLMRGRTTVLVAHRLS 943
+ ++E + L + + ++V H ++
Sbjct: 259 IATAKIEELILELKKKYSIIIVTHSMA 285
|
Length = 329 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 2e-26
Identities = 76/240 (31%), Positives = 107/240 (44%), Gaps = 26/240 (10%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
I FKNV+F Y S +D S P G+ ++VG +GSGKST+ L+ +G +
Sbjct: 8 IVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPA-LFATTI--------LENILYGKPEATMAE-VE 209
+N I LR IG+V Q P F +I LEN P M V
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAV--PYDEMHRRVS 124
Query: 210 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 269
A + PN LSGGQKQR+AIA + NP +++LDEATS L
Sbjct: 125 EALKQVDMLERADYEPNA-----------LSGGQKQRVAIAGVLALNPSVIILDEATSML 173
Query: 270 DAGSESIVQEALDRLMVGR--TTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA 327
D + + + + ++ T + + H LS D V V+ +G V + GT E+ A
Sbjct: 174 DPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
|
Length = 269 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 3e-26
Identities = 73/236 (30%), Positives = 124/236 (52%), Gaps = 16/236 (6%)
Query: 737 PVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERF 796
P+E I +++ F++ S+ + + NL + G A+VG++G GK+S+I+ +
Sbjct: 607 PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGE 666
Query: 797 YDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEA 856
P + ++ +R + V Q +F A++ DNI +G + E E
Sbjct: 667 LPPRSDASVV------------IRGTVAYVPQVSWIFNATVRDNILFGSP--FDPERYER 712
Query: 857 A-RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 915
A + + LP T +GERGV +SGGQKQR+++ARAV N + + D+ SALD
Sbjct: 713 AIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772
Query: 916 AE-SECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 970
A V + ++ +RG+T VLV ++L + VD I +V +G I E+G++ EL +
Sbjct: 773 AHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828
|
Length = 1622 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 3e-26
Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 15/206 (7%)
Query: 128 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPAL 187
G ++G +GSGKS ++ I F P++G +LL+ DI L + I V Q AL
Sbjct: 25 GDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRDISYVPQNYAL 82
Query: 188 FA-TTILENILYGKPEATMAEVEAAASAANAHSF--ITLLPNGYSTQVGERGVQLSGGQK 244
F T+ +NI YG + + + E I L N LSGG++
Sbjct: 83 FPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE-------TLSGGEQ 135
Query: 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN 302
QR+AIARA++ NPKILLLDE SALD ++ ++E L ++ G T + V H
Sbjct: 136 QRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWA 195
Query: 303 V-DTVAVIQQGQVVETGTHEELIAKA 327
+ D VA++ G++++ G EE+ K
Sbjct: 196 LADKVAIMLNGKLIQVGKPEEVFKKP 221
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-26
Identities = 60/215 (27%), Positives = 92/215 (42%), Gaps = 60/215 (27%)
Query: 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 805
E+ ++ F Y R + +L ++AG+ ALVG +GSGKS+++ I AG +
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAI-------AGLLK 50
Query: 806 IDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGF 865
+I +L + +++
Sbjct: 51 PTSGEILIDGKDIAKLPLEELRRR------------------------------------ 74
Query: 866 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEA 925
+ +P QLSGGQ+QR+A+ARA+L NP +LLLDE TS LD S L E
Sbjct: 75 IGYVP------------QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 926 LERLM-RGRTTVLVAHRLSTI-RGVDCIGVVQDGR 958
L L GRT ++V H D + V++DG+
Sbjct: 123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 3e-26
Identities = 60/231 (25%), Positives = 112/231 (48%), Gaps = 19/231 (8%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+++R++ Y V D +L + G+ L+G +G+GK++ + ++ PT+G
Sbjct: 1 LQIRNLTKTYKKGTKPAV-DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAY-----GKEGATEAEVVEAAR 858
I+G IR + K+ R +G Q ALF ++ +++ + G + E VE
Sbjct: 60 YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVE--- 115
Query: 859 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 918
+ + A LSGG K+++++A A++ P++LLLDE TS LD S
Sbjct: 116 --LLLRVLGLTDKA-NKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168
Query: 919 ECVLQEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSEL 968
+ + + + +GR+ +L H + + D I ++ DG++ GS EL
Sbjct: 169 RRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-26
Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 14/195 (7%)
Query: 749 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808
H+ +Y +P +D +L I +G+ ++G SG GK++++ LI F P+ G + ++G
Sbjct: 8 HLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG 66
Query: 809 KDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVS 867
+ I + G+V Q AL ++ DN+A+G + + A + V
Sbjct: 67 RRIEGPGAER-----GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVG 121
Query: 868 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 927
+K QLSGG +QR+ IARA+ P +LLLDE ALDA + +QE L
Sbjct: 122 LEGAEHKYIW-----QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLL 176
Query: 928 RLMR--GRTTVLVAH 940
L + G+ +L+ H
Sbjct: 177 DLWQETGKQVLLITH 191
|
Length = 259 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 4e-26
Identities = 69/256 (26%), Positives = 111/256 (43%), Gaps = 46/256 (17%)
Query: 100 IEFKNVTFSYP-SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN--- 155
+E KN++ S+P V S G+ + +VG SGSGKS + I
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61
Query: 156 --AGHVLLDNVDIKTL---QLRWLR-DQIGLVNQEP--AL-----FATTILENILYGKPE 202
G +L D D+ +L +LR +R +I ++ Q+P +L I E +
Sbjct: 62 IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG 121
Query: 203 ATMAEVEAAASAA-------NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255
+ E + A + + P+ +LSGG +QR+ IA A+
Sbjct: 122 LSKKEAKERAIELLELVGIPDPERRLKSYPH-----------ELSGGMRQRVMIAMALAL 170
Query: 256 NPKILLLDEATSALDAGSESIVQEALDRLMV------GRTTVVVAHRLSTIRNV-DTVAV 308
NPK+L+ DE T+ALD VQ + L+ G +++ H L + + D VAV
Sbjct: 171 NPKLLIADEPTTALDV----TVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAV 226
Query: 309 IQQGQVVETGTHEELI 324
+ G++VE G EE+
Sbjct: 227 MYAGRIVEEGPVEEIF 242
|
Length = 316 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 4e-26
Identities = 80/243 (32%), Positives = 126/243 (51%), Gaps = 24/243 (9%)
Query: 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD----- 798
+I++ +++ Y + K+ +++I AL+G SG GKS+ I + R D
Sbjct: 12 QIKVENLNLWYGEKQ---ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC 68
Query: 799 PTAGKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE--GATEAE-- 852
GKV I+G+DI +++ LR +G+V Q+P F SI+DN+AYG GA + +
Sbjct: 69 RIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLD 128
Query: 853 -VVEAA-RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 910
VVE A R+A + S + K+P + LSGGQ+QR+ IAR + P I+L DE
Sbjct: 129 GVVENALRSAALWDETS---DRLKSP----ALSLSGGQQQRLCIARTLAVKPKIILFDEP 181
Query: 911 TSALDAESECVLQEALERLMRGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELV 969
TSALD S +++ + L + T V+V H + R D G G ++E G ++
Sbjct: 182 TSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241
Query: 970 SRP 972
P
Sbjct: 242 HNP 244
|
Length = 258 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 5e-26
Identities = 68/238 (28%), Positives = 120/238 (50%), Gaps = 42/238 (17%)
Query: 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
IE+ ++ +Y +RP V +D +L + G+ AL+G +G+GKS+++ I P++G+
Sbjct: 4 MIEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60
Query: 804 VMIDGKDIRRLNLKSLRLKIGLVQQEPAL---FAASIFDNIA---YGKEG-------ATE 850
+ I GK +R+ + RL+IG V Q+ ++ F ++ D + YGK+G +
Sbjct: 61 IKIFGKPVRK---RRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK 117
Query: 851 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 910
+V EA + +GE LSGGQKQR+ +ARA+ +NP +LLLDE
Sbjct: 118 EKVDEALERVGMEDLR-------DRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEP 166
Query: 911 TSALDAESECVLQEALERL-MRGRTTVLVAHRLSTI-----------RGVDCIGVVQD 956
+ +D + + + L+ L G+T ++V H L + R + G ++
Sbjct: 167 FTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEE 224
|
Length = 254 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 5e-26
Identities = 82/222 (36%), Positives = 116/222 (52%), Gaps = 21/222 (9%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823
KD +L ++ G+ L+G SG GK++++ +I TAG + G+DI RL +
Sbjct: 21 KDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRL--PPQKRDY 78
Query: 824 GLVQQEPALFAA-SIFDNIAYG--KEGATEAEVVEAARAANVHGFVSALPNAYKTPVGER 880
G+V Q ALF ++ DNIAYG G AEV A R A + V + K P
Sbjct: 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEV--AERVAELLDLVGLPGSERKYPG--- 133
Query: 881 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLV 938
QLSGGQ+QR+A+ARA+ +P +LLLDE SALDA L+ + +L R G TT++V
Sbjct: 134 --QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMV 191
Query: 939 AH----RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY 976
H LS D I V+ G I + G+ E+ P +
Sbjct: 192 THDQEEALSM---ADRIVVMNHGVIEQVGTPQEIYRHPATPF 230
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 5e-26
Identities = 77/245 (31%), Positives = 122/245 (49%), Gaps = 23/245 (9%)
Query: 744 EIELRHVDFAY-PSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 801
+I + V+ Y P + D N+ I +G A++G +GSGKS+++ + PT+
Sbjct: 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61
Query: 802 GKVMIDGKDI----RRLNLKSLRLKIGLVQQ--EPALFAASIFDNIAYGKE--GATEAEV 853
G V I + I + LK LR K+G+V Q E LF ++ +I +G G +E +
Sbjct: 62 GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDA 121
Query: 854 VEAARAANVHGFVSALPNAY--KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT 911
+A + V LP ++P +LSGGQ +R+AIA + P +L+LDE T
Sbjct: 122 --KQKAREMIELV-GLPEELLARSPF-----ELSGGQMRRVAIAGVLAMEPEVLVLDEPT 173
Query: 912 SALDAESECVLQEALERLMR--GRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSEL 968
+ LD + + E +L + G TTVLV H + R D I V+ G + QG+ E+
Sbjct: 174 AGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233
Query: 969 VSRPD 973
+ PD
Sbjct: 234 FADPD 238
|
Length = 290 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 5e-26
Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 22/224 (9%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDI--RRLNL 816
K+ NL I + A++G SG GKS+ I + R + T GK++ ++I + ++
Sbjct: 41 KNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100
Query: 817 KSLRLKIGLVQQEPALFAASIFDNIAYG------KEGATEAEVVEAA-RAANVHGFVSAL 869
+ LR +G+V Q+P F SI+DN+ YG K+ T E+VE + R A A+
Sbjct: 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGA-------AI 153
Query: 870 PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL 929
+ K + + LSGGQ+QR+ IAR + P ++L+DE TSALD S ++E ++ L
Sbjct: 154 WDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL 213
Query: 930 MRGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
+ + ++V H + R D +G + E ++ S P
Sbjct: 214 KKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNP 257
|
Length = 271 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 5e-26
Identities = 72/237 (30%), Positives = 116/237 (48%), Gaps = 17/237 (7%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA--- 801
+E +HV F YP + D + I G AL+G +GSGKS++ LI P
Sbjct: 6 VEFKHVSFTYPDSKKPAL-NDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 802 GKVMIDGKDIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEAEVVEAA 857
K+ +DG + + +R K+G+V Q P A++ D++A+G E E+++
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124
Query: 858 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 917
R +V V L P LSGGQKQR+AIA + P I++LDE+TS LD
Sbjct: 125 R--DVLADVGMLDYIDSEPA-----NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA 177
Query: 918 SECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
+ + + + +L T + + H + D + V+ DG+++ QGS E+ S+
Sbjct: 178 GKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSKV 234
|
Length = 282 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 6e-26
Identities = 78/233 (33%), Positives = 111/233 (47%), Gaps = 27/233 (11%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA- 156
I+ ++V F Y D + S+ VA +G SG GKST + L R D P
Sbjct: 4 IDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60
Query: 157 --GHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYG------KPEATMA 206
G + +D +I K +Q+ LR +G+V Q P F +I EN+ YG K A +
Sbjct: 61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIR 120
Query: 207 E--VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE 264
+ E AA L + ++ E LSGGQ+QR+ IARAM +P +LL+DE
Sbjct: 121 QRVEETLKGAA--------LWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDE 172
Query: 265 ATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVE 316
SALD S + V+E + L T V+V H + V D A G++VE
Sbjct: 173 PASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225
|
Length = 250 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 6e-26
Identities = 72/244 (29%), Positives = 119/244 (48%), Gaps = 32/244 (13%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+E+ + F Y +R D + +R G+ AL+G +G+GKS++ +L+ R Y G++
Sbjct: 2 LEVAGLSFRYGARR---ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPAL-FAASIFDNIAYGKEGATEAEVVEAARAANVH 863
+ G D+RR +L ++G+V Q+P L S+ N+ Y A +H
Sbjct: 59 SVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRY---------------HAALH 102
Query: 864 GFVSALPNAYKTPV----------GERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 913
G A A + ++ +L+GG ++R+ IARA+L PA+LLLDE T
Sbjct: 103 GLSRAEARARIAELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVG 162
Query: 914 LDAESECVLQEALERLMRGR-TTVLVA-HRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971
LD S + + L R + +VL A H + I D + V+ GR++ G+ +EL
Sbjct: 163 LDPASRAAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222
Query: 972 PDGA 975
GA
Sbjct: 223 TGGA 226
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 6e-26
Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 12/228 (5%)
Query: 756 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKD 810
S + +L + AL+G SG GKS+ + + R D G++ +G++
Sbjct: 13 SYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQN 72
Query: 811 I--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE--GATEAEVVEAARAANVHGFV 866
I +++L LR ++G+V Q+P F S++DN+AYG + G + E+++ ++
Sbjct: 73 IYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQ-- 130
Query: 867 SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEAL 926
+A+ K + SGGQ+QRI IARA+ P ++LLDE TSALD S ++E L
Sbjct: 131 AAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETL 190
Query: 927 ERLMRGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPD 973
L T ++V H L R D + +G ++E G E+ P
Sbjct: 191 MELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAPK 238
|
Length = 251 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 6e-26
Identities = 75/239 (31%), Positives = 120/239 (50%), Gaps = 32/239 (13%)
Query: 745 IELRHVDFAYP--SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
I + H+ F YP + + KD + + G+ A+VG +GSGKS++ L+ P AG
Sbjct: 6 IRVEHISFRYPDAATYAL---KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62
Query: 803 KVMIDGKDIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEAEVVEAAR 858
+ + G + + +R ++G+V Q P A++ D++A+G E G E+VE
Sbjct: 63 TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVD 122
Query: 859 AA----NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 914
A + F++ P+ +LSGGQKQR+AIA + P I++LDEATS L
Sbjct: 123 QALRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIILDEATSML 171
Query: 915 DAESECVLQEALE--RLMR--GRTTVL-VAHRLSTIRGVDCIGVVQDGRIVEQGSHSEL 968
D +E LE R ++ TVL + H L D + V+ G I+E+G+ E+
Sbjct: 172 DPRGR---REVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEI 227
|
Length = 279 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 6e-26
Identities = 83/279 (29%), Positives = 131/279 (46%), Gaps = 51/279 (18%)
Query: 100 IEFKNVTFSYP--SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 157
I ++++F YP + + +D S G+ VA+VG +GSGKST+ L+ P AG
Sbjct: 6 IRVEHISFRYPDAATYAL---KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62
Query: 158 HVLLDNV--DIKTLQLRW-LRDQIGLVNQEP--ALFATTI-------LENILYGKPEATM 205
+ + + +T+ W +R Q+G+V Q P T+ LENI G P M
Sbjct: 63 TITVGGMVLSEETV---WDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI--GVPREEM 117
Query: 206 AE-VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE 264
E V+ A F+ P+ +LSGGQKQR+AIA + P I++LDE
Sbjct: 118 VERVDQALRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIILDE 166
Query: 265 ATSALD-AGSESIVQEALD--RLMV--GRTTVV-VAHRLSTIRNVDTVAVIQQGQVVETG 318
ATS LD G +E L+ R + TV+ + H L D V V+ +G+++E G
Sbjct: 167 ATSMLDPRGR----REVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEG 222
Query: 319 THEELIAKAGAYASL-------IRFQEMVRNRDFANPST 350
T EE+ + ++ +E+++ P+T
Sbjct: 223 TPEEIFKSGHMLQEIGLDVPFSVKLKELLKRNGILLPNT 261
|
Length = 279 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 6e-26
Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 34/224 (15%)
Query: 101 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL 160
E +++T SY P + D S G+ +A+VG +G+GKST++ I P +G
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSG--- 54
Query: 161 LDNVDIKTLQLRWLRDQIGLVNQEPAL---FATTILENI---LYGK-------PEATMAE 207
++ + L R +IG V Q ++ F ++ + + LYG +A A+
Sbjct: 55 --SIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK 112
Query: 208 VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 267
V+ A Q+GE LSGGQ+QR+ +ARA++++P +LLLDE +
Sbjct: 113 VDEALERVGLSELA-------DRQIGE----LSGGQQQRVLLARALVQDPDLLLLDEPFA 161
Query: 268 ALDAGSESIVQEALDRL-MVGRTTVVVAHRLSTI-RNVDTVAVI 309
+D ++ + E L L G T +VV H L + D V ++
Sbjct: 162 GVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL 205
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 7e-26
Identities = 49/129 (37%), Positives = 75/129 (58%), Gaps = 13/129 (10%)
Query: 787 SSVIALIERFYDPTAGKVMIDGKDIRRLN-LKSLRLKIGLVQQEPALFA-ASIFDNIAYG 844
S+++ LI PT+G +++DG+D L+ K LR +IG+V Q+P LF ++ +N+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 845 -KEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA 903
++ +A EA + F+ P LSGGQKQR+AIARA+LK P
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVG----------TLSGGQKQRVAIARALLKKPK 110
Query: 904 ILLLDEATS 912
+LLLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 7e-26
Identities = 71/236 (30%), Positives = 111/236 (47%), Gaps = 34/236 (14%)
Query: 765 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP----TAGKVMIDGKDIRRLNLKSLR 820
D NL ++ G+ ALVG SGSGKS I P T+G++++DG+ + L+++
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR- 62
Query: 821 LKIGLVQQEPALFAASIFDNIAYGKEGATE-------------AEVVEAARAANVHGFVS 867
I + Q P + F+ + A E A ++EA A
Sbjct: 63 -HIATIMQNPR----TAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVG------ 111
Query: 868 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 927
LP+ + + + QLSGG QR+ IA A+L P L+ DE T+ LD ++ + + L
Sbjct: 112 -LPDP-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLR 169
Query: 928 RLM--RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 980
L G +L+ H L + R D + V+ DGRIVE+G+ E+ P +R L
Sbjct: 170 ELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKL 225
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 8e-26
Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 22/222 (9%)
Query: 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA---GHVLLDNVDI--KTLQLR 172
D S+ F + A++G SG GKST + + R D P A G +LLD +I + +
Sbjct: 24 DISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83
Query: 173 WLRDQIGLVNQEPALFATTILENILYG------KPEATMAE-VEAAASAANAHSFITLLP 225
LR ++G+V Q+P F +I EN+ YG K +A +AE VE + A L
Sbjct: 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHA-------ALW 136
Query: 226 NGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM 285
+ ++ E + LSGGQ+QR+ IARA+ P++LL+DE SALD + ++E + L
Sbjct: 137 DEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK 196
Query: 286 VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 326
T ++V H + V D A G+++E G E++ +
Sbjct: 197 ARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238
|
Length = 253 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 9e-26
Identities = 77/213 (36%), Positives = 110/213 (51%), Gaps = 21/213 (9%)
Query: 127 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL--------QLRWLRDQI 178
G+ VA++G SGSGK+T++ I P AG + + ++ I T +R LR +
Sbjct: 28 PGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHV 87
Query: 179 GLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGV 237
G V Q LF T+LENI+ G P E + A+A + G T R
Sbjct: 88 GFVFQNFNLFPHRTVLENIIEG-PVIVKGEPKEEATARARELLAKVGLAGKETSYPRR-- 144
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV----GRTTVVV 293
LSGGQ+QR+AIARA+ P+++L DE TSALD +V E L+ + RT V+V
Sbjct: 145 -LSGGQQQRVAIARALAMRPEVILFDEPTSALDP---ELVGEVLNTIRQLAQEKRTMVIV 200
Query: 294 AHRLSTIRNV-DTVAVIQQGQVVETGTHEELIA 325
H +S R+V D + QG++VE G + L A
Sbjct: 201 THEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233
|
Length = 250 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (267), Expect = 9e-26
Identities = 72/226 (31%), Positives = 118/226 (52%), Gaps = 16/226 (7%)
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERF---YDP---TAGKVMIDGKDIR 812
D + KD ++I ++G SGSGKS+++ ++ R YD GKV+ GKDI
Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81
Query: 813 RLNLKSLRLKIGLVQQEPALFA-ASIFDNIAY--GKEGATEAEVVEAARAANVH--GFVS 867
+++ LR ++G+V Q+P F SI+DNIAY G E ++ + G
Sbjct: 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWK 141
Query: 868 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 927
+ + +P QLSGGQ+QR+ IARA+ P +LL+DE TS +D + +++ +
Sbjct: 142 EVYDRLNSPAS----QLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLIT 197
Query: 928 RLMRGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRP 972
L V+V+H + R D + + +G +VE GS +E+ + P
Sbjct: 198 ELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSP 243
|
Length = 257 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 1e-25
Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 10/223 (4%)
Query: 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA---GHVLLDNVDIKTLQLRWLRD 176
D ++ K A++G SG GKST + R D A G V ++ D+K + LR
Sbjct: 20 DINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79
Query: 177 QIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITL-LPNGYSTQVGER 235
+G+V Q+P +F +I ENI Y M + + A + L ++ +
Sbjct: 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQN 139
Query: 236 GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAH 295
+ LSGGQ+QR+ IARA+ PK+LLLDE TSALD S +++E L L + ++V H
Sbjct: 140 ALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTH 199
Query: 296 RLSTIRNV-DTVAVIQQGQVVETGTHEELI-----AKAGAYAS 332
+ + V D A G+++E G +E K AY S
Sbjct: 200 NMQQGKRVADYTAFFHLGELIEFGESKEFFENPKQEKTKAYLS 242
|
Length = 246 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 67/205 (32%), Positives = 99/205 (48%), Gaps = 23/205 (11%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IEF NVT +YP +I AG+ V +VG SG+GKST++ LI + P +G +
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 160 LLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILEN------ILYGKPEATMAEVE 209
++ D+ L + +LR +IG+V Q+ L + EN + P V
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 210 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 269
AA LP +LSGG++QR+AIARA++ +P IL+ DE T L
Sbjct: 119 AALELVGLSHKHRALPA-----------ELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167
Query: 270 DAGSESIVQEALDRLMVGRTTVVVA 294
D + + L ++ TTVVVA
Sbjct: 168 DPDTTWEIMNLLKKINKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 66/233 (28%), Positives = 114/233 (48%), Gaps = 12/233 (5%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E ++F Y +R + D S G+ VA++G +G+GKST+ SL+ R Y G +
Sbjct: 2 LEVAGLSFRYGARRAL---DDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPAL-FATTILENILYGKPEATMAEVEAAASAANAH 218
+ D++ L ++G+V Q+P L ++ +N+ Y ++ EA A A
Sbjct: 59 SVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAEL- 116
Query: 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 278
L G + + ++ +L+GG ++R+ IARA+L P +LLLDE T LD S + +
Sbjct: 117 ----LARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIT 172
Query: 279 EALDRLMVGRTTVVV--AHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGA 329
+ L + V+ H + I D + V+ +G+V+ G EL G
Sbjct: 173 AHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGG 225
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 1e-25
Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 38/227 (16%)
Query: 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL-RWLR 175
I S+ P G+ VA++G +G+GK+T++ I P +G + D DI L R
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74
Query: 176 DQIGLVNQEPALFAT-TILENILYG-------KPEATMAEVEAAASAANAHSFITLLPNG 227
IG V + +F T+ EN+L G K +A + V L P
Sbjct: 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERV------------YELFPR- 121
Query: 228 YSTQVGER----GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDR 283
+ ER LSGG++Q +AIARA++ PK+LLLDE + L + IV+E +
Sbjct: 122 ----LKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEA 174
Query: 284 LM----VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIA 325
+ G T ++V + D V+++G+VV GT EL+A
Sbjct: 175 IRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 2e-25
Identities = 72/218 (33%), Positives = 115/218 (52%), Gaps = 9/218 (4%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT-----AGKVMIDGKDIR--RLNL 816
K+ NL ++ G AL+G SG GK++ + I R +D T G++++DG+DI R++
Sbjct: 21 KNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80
Query: 817 KSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKT 875
++R ++G+V Q+P F S+FDN+ G + A + A +AL + K
Sbjct: 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKD 140
Query: 876 PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTT 935
+ LSGGQ+QR+ IARA+ P ILL+DE TSALD S +++ + L + T
Sbjct: 141 RLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTI 200
Query: 936 VLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
++V H + R D G +VE G +L + P
Sbjct: 201 IIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNP 238
|
Length = 252 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-25
Identities = 79/247 (31%), Positives = 122/247 (49%), Gaps = 44/247 (17%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+ L+++ + S V + NL I+ G L+G SG GK++V+ L+ PT G++
Sbjct: 7 VVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI 63
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG--KEGATEAE----VVEAA 857
IDG+D+ +++ + I +V Q ALF S+ +N+ YG G + E V EA
Sbjct: 64 FIDGEDVTHRSIQ--QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEAL 121
Query: 858 RAANVHGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 916
++ GF +R V Q+SGGQ+QR+A+ARA++ P +LL DE S LDA
Sbjct: 122 ELVDLAGF------------EDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
Query: 917 ESECVLQEALERLMR----------GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSH 965
L R MR T++ V H S V D + V+ G+I++ GS
Sbjct: 170 N--------LRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSP 221
Query: 966 SELVSRP 972
EL +P
Sbjct: 222 QELYRQP 228
|
Length = 351 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 2e-25
Identities = 84/255 (32%), Positives = 137/255 (53%), Gaps = 26/255 (10%)
Query: 733 PDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIAL 792
P A+ + + +E+R++ ++ + V D +L I G+ AL+GASG GKS+++ +
Sbjct: 8 PQAKTRKALTPLLEIRNLTKSFDGQHAV---DDVSLTIYKGEIFALLGASGCGKSTLLRM 64
Query: 793 IERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG--KEGAT 849
+ F PTAG++M+DG D+ + + I ++ Q ALF ++ NIA+G ++
Sbjct: 65 LAGFEQPTAGQIMLDGVDLSHV--PPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLP 122
Query: 850 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 909
+AE+ A+R + G V A + P QLSGGQ+QR+A+AR++ K P +LLLDE
Sbjct: 123 KAEI--ASRVNEMLGLVHMQEFAKRKPH-----QLSGGQRQRVALARSLAKRPKLLLLDE 175
Query: 910 ATSALDAESECVLQ----EALERLMRGRTTVLVAH---RLSTIRGVDCIGVVQDGRIVEQ 962
ALD + +Q + LER+ G T V+V H T+ G I ++ G+ V+
Sbjct: 176 PMGALDKKLRDRMQLEVVDILERV--GVTCVMVTHDQEEAMTMAGR--IAIMNRGKFVQI 231
Query: 963 GSHSELVSRPDGAYS 977
G E+ P YS
Sbjct: 232 GEPEEIYEHPTTRYS 246
|
Length = 377 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 79/251 (31%), Positives = 124/251 (49%), Gaps = 32/251 (12%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--PTA- 801
I+++ ++ Y S V +D NL I A +G SG GKS+V+ + R ++ P A
Sbjct: 5 IDVKDLNIYYGSFHAV---EDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGAR 61
Query: 802 --GKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYG------KEGATE 850
G+V++DG+D+ ++ ++R IG+V Q P F SI DN+ G +
Sbjct: 62 VEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDL 121
Query: 851 AEVVEAA-RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 909
E+VE + R AN L N K + + G LSGGQ+QR+ IARA+ P +LL+DE
Sbjct: 122 DELVEKSLRGAN-------LWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDE 174
Query: 910 ATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGV-------DCIGVVQDGRIVEQ 962
SALD S +++ + L + T V+V H + V + + GR+VE
Sbjct: 175 PCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234
Query: 963 GSHSELVSRPD 973
++ S P
Sbjct: 235 DDTEKIFSNPT 245
|
Length = 258 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 3e-25
Identities = 138/558 (24%), Positives = 253/558 (45%), Gaps = 58/558 (10%)
Query: 427 IGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYF 486
IG LS F+GP ++++ +++ +PA + +F + G+ L + +
Sbjct: 311 IGHDLSQFVGP---VILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGV------LCESQY 361
Query: 487 FSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHN--SSLVAARLATDAADVKSAIADRIS 544
F +G + R+R ++AAI + E N S V + TDA + IA+++
Sbjct: 362 FQNVGR-VGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDA-NALQQIAEQLH 419
Query: 545 -------VILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTA 597
I+ +M L VA + + L++ L+V ++L+ +G
Sbjct: 420 GLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIV--RKMRKLTKEGL----- 472
Query: 598 KAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQF 657
+ K I E ++++ TV + A K +R + R+ A +L + F
Sbjct: 473 QWTDKRVGIINEILASMDTVKCY-AWEKSFESRIQGIRNEELSWFRK---AQLLSAFNSF 528
Query: 658 ALHASEALI--LWYGVHLVGKGVSTFSKV---IKVFVVLVVTANSVAETVSLAPEIIRGG 712
L++ ++ + +GV ++ G T ++ + +F VL N + +S +++
Sbjct: 529 ILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLS---QVVNAN 585
Query: 713 ESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRA 772
S+ + L RI +P P++ I +++ F++ S+ D NL I
Sbjct: 586 VSLQRIEELLLSEERILAQNP---PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPV 642
Query: 773 GQSQALVGASGSGKSSVI-ALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPA 831
G A+VG +G GK+S+I A++ V+I G + V Q
Sbjct: 643 GSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGS-------------VAYVPQVSW 689
Query: 832 LFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 891
+F A++ +NI +G + +E A + + LP T +GERGV +SGGQKQR
Sbjct: 690 IFNATVRENILFGSDFESE-RYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQR 748
Query: 892 IAIARAVLKNPAILLLDEATSALDAE-SECVLQEALERLMRGRTTVLVAHRLSTIRGVDC 950
+++ARAV N I + D+ SALDA + V ++ ++G+T VLV ++L + +D
Sbjct: 749 VSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDR 808
Query: 951 IGVVQDGRIVEQGSHSEL 968
I +V +G I E+G+ +EL
Sbjct: 809 IILVSEGMIKEEGTFAEL 826
|
Length = 1495 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-25
Identities = 60/197 (30%), Positives = 95/197 (48%), Gaps = 19/197 (9%)
Query: 103 KNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD 162
+N++FSY +++ D S+ AG+ +A+ G +G+GK+T+ ++ ++G +LL+
Sbjct: 3 ENISFSYKKGTEIL--DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60
Query: 163 NVDIKTLQLRWLRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEAAASAANAHSF 220
IK + R IG V Q+ LF ++ E +L G E A +
Sbjct: 61 GKPIK---AKERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL------DAGNEQAETVL 111
Query: 221 ITLLPNGYSTQVGERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 279
L ER LSGGQKQR+AIA A+L +L+ DE TS LD + V E
Sbjct: 112 KDLDLYALK----ERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE 167
Query: 280 ALDRLM-VGRTTVVVAH 295
+ L G+ +V+ H
Sbjct: 168 LIRELAAQGKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 3e-25
Identities = 67/191 (35%), Positives = 100/191 (52%), Gaps = 19/191 (9%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--PTA---GKVMIDGKDI--RRLNL 816
K+ L I Q A +G SG GKS+++ R D P GKV GK++ ++
Sbjct: 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86
Query: 817 KSLRLKIGLVQQEPALFAASIFDNIAYGK-----EGATEAEVVEAARAANVHGFVSALPN 871
+R +IG+V Q+P F SI+DNIAYG +G + V + R A AL +
Sbjct: 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQA-------ALWD 139
Query: 872 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR 931
K + + G+ LSGGQ+QR+ IARA+ P ++L+DE SALD S ++E + L
Sbjct: 140 EVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE 199
Query: 932 GRTTVLVAHRL 942
T ++V H +
Sbjct: 200 QYTIIIVTHNM 210
|
Length = 264 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 3e-25
Identities = 70/226 (30%), Positives = 114/226 (50%), Gaps = 17/226 (7%)
Query: 109 YPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT 168
+ P V++ RD S+ P GK V+G +GSGKST++ + ++ + G V
Sbjct: 668 FELEPKVLL-RDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV--------- 717
Query: 169 LQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGY 228
W I V Q+ + T+ NIL+ E A + A + + + L G
Sbjct: 718 ----WAERSIAYVPQQAWIMNATVRGNILFFDEEDA-ARLADAVRVSQLEADLAQLGGGL 772
Query: 229 STQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-SESIVQEALDRLMVG 287
T++GE+GV LSGGQK R+++ARA+ N + LLD+ SALDA E +V+E + G
Sbjct: 773 ETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAG 832
Query: 288 RTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASL 333
+T V+ H++ + D V + G+V +G+ + + YA+L
Sbjct: 833 KTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADF-MRTSLYATL 877
|
Length = 1560 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 3e-25
Identities = 65/207 (31%), Positives = 103/207 (49%), Gaps = 8/207 (3%)
Query: 113 PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR 172
+ + +I P G+ +VG G GKS+++ I G V N +
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 173 WLRDQ----IGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGY 228
R + + Q+P L T+ ENI +G P +A A + I LLP G
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGD 130
Query: 229 STQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-SESIVQEALDRLMVG 287
T++GERG+ LSGGQ+QRI +ARA+ +N I+ LD+ SALD S+ ++QE + + +
Sbjct: 131 QTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD 190
Query: 288 --RTTVVVAHRLSTIRNVDTVAVIQQG 312
RT V+V H+L + + D + ++ G
Sbjct: 191 DKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 4e-25
Identities = 63/234 (26%), Positives = 112/234 (47%), Gaps = 25/234 (10%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+E+ +++ Y + +L + G+ AL+G +G+GK++++ I P +G +
Sbjct: 1 LEVENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI 57
Query: 805 MIDGKDIRRLNL-KSLRLKIGLVQQEPALFAA-SIFDNI---AYGKEGATEAEVVEAARA 859
DG+DI L + R IG V + +F ++ +N+ AY + A +E
Sbjct: 58 RFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLER--- 114
Query: 860 ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 919
V+ L K G LSGG++Q +AIARA++ P +LLLDE + L +
Sbjct: 115 --VYELFPRLKERRKQLAG----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---AP 165
Query: 920 CVLQEALERLMR----GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSEL 968
+++E E + G T +LV + D V++ GR+V +G+ +EL
Sbjct: 166 KIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 4e-25
Identities = 71/210 (33%), Positives = 110/210 (52%), Gaps = 22/210 (10%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----P 799
I L++V +Y + V K+ I G+ AL+G SG GKS+V+ + R D
Sbjct: 14 ISLQNVTISYGTFEAV---KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS 70
Query: 800 TAGKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE-----GATEAE 852
G+V+ DG D+ R++ +R +IG+V Q+P F SI++NIA+G G +
Sbjct: 71 LKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL 130
Query: 853 VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 912
V + R A A+ + K + E G LSGGQ+QR+ IAR + P ++L+DE S
Sbjct: 131 VERSLRKA-------AVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCS 183
Query: 913 ALDAESECVLQEALERLMRGRTTVLVAHRL 942
ALD S ++E + L + T V+V H +
Sbjct: 184 ALDPISTLKIEETMHELKKNFTIVIVTHNM 213
|
Length = 269 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 4e-25
Identities = 70/227 (30%), Positives = 109/227 (48%), Gaps = 48/227 (21%)
Query: 127 AGKTVAVVGGSGSGKSTV---VSLIERFYDPNAGHVLLDNVDIK---TLQLRWLRDQIGL 180
GKT+AVVG SG GKST+ +++IE P G + D+ + LR +I +
Sbjct: 40 RGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDLLKADPEAQKLLRQKIQI 96
Query: 181 VNQEPALFAT--------TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQV 232
V Q P + + ILE +P + AA A + + +V
Sbjct: 97 VFQNP--YGSLNPRKKVGQILE-----EPLLINTSLSAAERREKALAMMA--------KV 141
Query: 233 GERGVQ-------LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM 285
G R SGGQ+QRIAIARA++ +P +++ DE SALD S+ + L+ +M
Sbjct: 142 GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV---SVQAQVLNLMM 198
Query: 286 -----VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 326
+G + V ++H LS + ++ D V V+ G+ VE GT E++
Sbjct: 199 DLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNN 245
|
Length = 327 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-25
Identities = 55/220 (25%), Positives = 102/220 (46%), Gaps = 63/220 (28%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+ELR + + V +L +R G+ AL+G +G+GKS+++ ++ Y P +G++
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 805 MIDGKDIRRLNLK-SLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVH 863
++DGK++ + + + R I + V+
Sbjct: 58 LVDGKEVSFASPRDARRAGIAM------------------------------------VY 81
Query: 864 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL-DAESECVL 922
QLS G++Q + IARA+ +N +L+LDE T+AL AE E +
Sbjct: 82 -------------------QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF 122
Query: 923 QEALERLM-RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIV 960
+ + RL +G + ++HRL + + D + V++DGR+V
Sbjct: 123 -KVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 5e-25
Identities = 78/242 (32%), Positives = 125/242 (51%), Gaps = 17/242 (7%)
Query: 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIA----LIERFY 797
+IE+R + ++ V V NL I AL+G SGSGKS+++ LIE +
Sbjct: 1 MNKIEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYP 57
Query: 798 DP-TAGKVMIDGKDIRRLNLKSLRLKIGLVQQEP-ALFAASIFDNIAYG----KEGATEA 851
+ +G+V +DG+DI ++++ LR ++ +V Q P + SIF+N+A G + ++
Sbjct: 58 EARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKK 117
Query: 852 EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT 911
E+ E R A + L + K + +LSGGQ+QR+ IARA+ P +LL DE T
Sbjct: 118 ELQERVRWALEK---AQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPT 174
Query: 912 SALDAESECVLQEALERLMRGRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVS 970
+ LD E+ ++ L + T VLV H R D + + G+IVE G E+ +
Sbjct: 175 ANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT 234
Query: 971 RP 972
P
Sbjct: 235 NP 236
|
Length = 250 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 5e-25
Identities = 74/237 (31%), Positives = 123/237 (51%), Gaps = 23/237 (9%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE+ + F Y K +L I G AL+G +G+GKS+++ + Y P G+V
Sbjct: 5 IEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYG--KEGATEAEVV----EA 856
+ G+++ N K +R K+GLV Q+P +F+++++D++A+G G + EV EA
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 857 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 916
+A + F K P LS GQK+R+AIA + +P +++LDE + LD
Sbjct: 123 LKAVRMWDF------RDKPPY-----HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
Query: 917 ESECVLQEALERLMRGRTTVLVA-HRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSR 971
+ L E L+RL TV+VA H + D + V+++GR++ +G S L
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDE 228
|
Length = 274 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 7e-25
Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 8/207 (3%)
Query: 758 PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK 817
+ + N+RI GQ +VG G GKSS++ I GKV K+ + +
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 818 SL----RLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAY 873
+ R + Q+P L A++ +NI +G + A ++ + LP
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGD 130
Query: 874 KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE-SECVLQEALERLMRG 932
+T +GERG+ LSGGQ+QRI +ARA+ +N I+ LD+ SALD S+ ++QE + + ++
Sbjct: 131 QTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD 190
Query: 933 --RTTVLVAHRLSTIRGVDCIGVVQDG 957
RT VLV H+L + D I ++DG
Sbjct: 191 DKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 8e-25
Identities = 71/219 (32%), Positives = 113/219 (51%), Gaps = 9/219 (4%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--PTA---GKVMIDGKDI--RRLNL 816
KD ++ A++G SG GKS+V+ I R +D P+A GK+++D DI R ++
Sbjct: 21 KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80
Query: 817 KSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKT 875
S+R ++G+V Q+P F A SI+DN+ G + EA AL + K
Sbjct: 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD 140
Query: 876 PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTT 935
+ ++LSGGQ+QR+ IAR + P ++L+DE SALD S ++E +E L T
Sbjct: 141 RLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTI 200
Query: 936 VLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVSRPD 973
++V H + R D G +VE G ++ + P+
Sbjct: 201 IIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPE 239
|
Length = 252 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 9e-25
Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 17/225 (7%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 821
V K+ NL+I G+ A+ G++GSGK+S++ LI +P+ GK+ G+
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR------------ 99
Query: 822 KIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERG 881
I Q + +I +NI +G E +A + ++ P T +GE G
Sbjct: 100 -ISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGG 157
Query: 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC-VLQEALERLMRGRTTVLVAH 940
+ LSGGQ+ RI++ARAV K+ + LLD LD +E + + + +LM +T +LV
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTS 217
Query: 941 RLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPDGAYSRLLQLQH 984
++ ++ D I ++ +G G+ SEL S RPD + S+L+
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFS-SKLMGYDT 261
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 9e-25
Identities = 70/254 (27%), Positives = 131/254 (51%), Gaps = 25/254 (9%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+++ +++ Y + K N+ I+ G+ A++G +G+GKS++ + P++G++
Sbjct: 6 LKVEELNYNYSDGTHAL--KGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 805 MIDGK--DIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYG--KEGATEAEVVEAAR 858
+ DGK D R L LR +G+V Q+P LF+AS++ ++++G E EV +
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 859 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD--- 915
A + L + P LS GQK+R+AIA ++ P +L+LDE T+ LD
Sbjct: 124 NALKRTGIEHLKD---KPTH----CLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176
Query: 916 -AESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPD 973
+E +L E + L G T ++ H + + D + V+++GR++ QG+ E+ + +
Sbjct: 177 VSEIMKLLVEMQKEL--GLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKE 234
Query: 974 ---GAYSRLLQLQH 984
RL ++ H
Sbjct: 235 MLRKVNLRLPRIGH 248
|
Length = 283 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 15/211 (7%)
Query: 129 KTVAVVGGSGSGKSTVVSLIERFYD--PN---AGHVLLDNVDI--KTLQLRWLRDQIGLV 181
+ A +G SG GKST + R D PN G + +D +D+ + LR ++G+V
Sbjct: 32 EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMV 91
Query: 182 NQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGER----GV 237
Q+P F +I +N+ YG +A+ + S ++ G ++G+R
Sbjct: 92 FQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSV---GLWEELGDRLKDSAF 148
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRL 297
+LSGGQ+QR+ IARA+ P +LL+DE SALD + ++++ + L T +VV H +
Sbjct: 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSM 208
Query: 298 STIRNV-DTVAVIQQGQVVETGTHEELIAKA 327
+ V D VA Q G++VE T +E+
Sbjct: 209 KQAKKVSDRVAFFQSGRIVEYNTTQEIFKNP 239
|
Length = 251 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-24
Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 17/200 (8%)
Query: 128 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI----KTLQLRWLRDQIGLVNQ 183
+ + G SG+GKST++ I P+ G ++L+ + K + L + +IGLV Q
Sbjct: 23 EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQ 82
Query: 184 EPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGV-QLSG 241
+ ALF + EN+ +G E + + + R QLSG
Sbjct: 83 QYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGL--------DHLLNRYPAQLSG 134
Query: 242 GQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLST 299
G+KQR+A+ARA+ P++LLLDE SALD + L ++ + + V H LS
Sbjct: 135 GEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSE 194
Query: 300 I-RNVDTVAVIQQGQVVETG 318
D + V++ G++ G
Sbjct: 195 AEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 1e-24
Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 36/243 (14%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--------- 812
V K +L+ AG +++G+SGSGKS+ + I P+AG + ++G++IR
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 813 ----RLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE---GATEAEVVEAARAANVHG 864
+ L+ LR ++G+V Q L++ ++ +N+ G ++AE +E A
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKV 140
Query: 865 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 924
++ +AY LSGGQ+QR+AIARA+ P ++L DE TSALD E ++ E
Sbjct: 141 GIAEKADAYP-------AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE---LVGE 190
Query: 925 ALERLMR-----GRTTVLVAHRLSTIRGVDC-IGVVQDGRIVEQGSHSELVSRPDGAYSR 978
L ++M+ GRT V+V H + R V + + G+I E+G ++ P R
Sbjct: 191 VL-KVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQSP--R 247
Query: 979 LLQ 981
L Q
Sbjct: 248 LKQ 250
|
Length = 256 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-24
Identities = 61/210 (29%), Positives = 107/210 (50%), Gaps = 25/210 (11%)
Query: 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 805
E+ + +Y P V +D + ++ G+ A+VG +G+GKS+++ I PT+G +
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 806 IDGKDIRRLNLKSLRLKIGLVQQEPAL---FAASIFDNIA---YGKEGATE-AEVVEAAR 858
+ GK + + R +IG V Q ++ F S+ D + YG +G + A+
Sbjct: 58 VFGKPLEK-----ERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK 112
Query: 859 AANVHGFV--SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 916
V S L + +GE LSGGQ+QR+ +ARA++++P +LLLDE + +D
Sbjct: 113 VDEALERVGLSELADR---QIGE----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDP 165
Query: 917 ESECVLQEALERL-MRGRTTVLVAHRLSTI 945
+++ + E L L G T ++V H L +
Sbjct: 166 KTQEDIYELLRELRREGMTILVVTHDLGLV 195
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-24
Identities = 61/224 (27%), Positives = 106/224 (47%), Gaps = 18/224 (8%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+ + FSY +P F + F G+ A+VG SGSGKST+++LI F P +G V
Sbjct: 1 VRLDKIRFSYGEQP-----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGK-PEATMAEVEAAASAANA 217
L++ VD+ + ++ QE LFA T+ +N+ G P + + A
Sbjct: 56 LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 218 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 277
G + +LSGG++QR+A+AR ++++ +LLLDE +ALD + +
Sbjct: 114 ARV------GLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEM 167
Query: 278 QEALDRL--MVGRTTVVVAHRLSTIRNVDT-VAVIQQGQVVETG 318
+ + L T ++V H+ + + V + G++ G
Sbjct: 168 LDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 1e-24
Identities = 66/222 (29%), Positives = 104/222 (46%), Gaps = 24/222 (10%)
Query: 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178
D S+ G+ V ++G +G+GK+T+ +LI FY P++G V+ DI L ++
Sbjct: 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIARL 79
Query: 179 GLVN--QEPALFAT-TILENILYG------------KPEATMAEVEAAASAANAHSFITL 223
G+ Q LF T+LEN+ G +P A E EA A F+ L
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGL 139
Query: 224 LPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDR 283
LS GQ++R+ IARA+ PK+LLLDE + L+ + E +
Sbjct: 140 GE-----LADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRE 194
Query: 284 L--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEE 322
L G T +++ H + + + D + V+ G+V+ GT EE
Sbjct: 195 LRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236
|
Length = 250 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 1e-24
Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 13/247 (5%)
Query: 111 SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ 170
S +I + P G ++G +GSGKST++ L+ P+AG V L VD+ L
Sbjct: 10 SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLS 69
Query: 171 LRWLRDQIGLVNQE-PALFATTILENILYGK-PEATMAEVEAAASAANAHSFITLLPNGY 228
R ++ LV Q+ T+ + + G+ P ++ ++ AA +
Sbjct: 70 RRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTE--- 126
Query: 229 STQVGERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG 287
+ + +R + LSGG++QR+ +ARA+ + PK+LLLDE T+ LD ++ + L
Sbjct: 127 LSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT 186
Query: 288 RTTVVVA-HRLS-TIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDF 345
TVV A H L+ D V V+ G+VV G E++ A LIR V
Sbjct: 187 GVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPA-----LIRAVYGVDATVL 241
Query: 346 ANPSTRR 352
+P T R
Sbjct: 242 THPDTGR 248
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-24
Identities = 73/214 (34%), Positives = 106/214 (49%), Gaps = 22/214 (10%)
Query: 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA---GHVLLDNVDI--KTLQLR 172
D S+ P + A +G SG GKST++ R D N G + LD +I K + +
Sbjct: 43 DISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102
Query: 173 WLRDQIGLVNQEPALFATTILENILYG------KPEATMAE-VEAAASAANAHSFITLLP 225
LR ++G+V Q P F +I EN++YG + E VE + A L
Sbjct: 103 ELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAA-------LW 155
Query: 226 NGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM 285
+ ++ E LSGGQ+QR+ IARA+ P++LLLDE TSALD S ++E + L
Sbjct: 156 DEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK 215
Query: 286 VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 318
T V+V H + V D A + G++VE G
Sbjct: 216 SKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYG 249
|
Length = 272 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (271), Expect = 2e-24
Identities = 79/301 (26%), Positives = 135/301 (44%), Gaps = 52/301 (17%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E + ++ S+ V S+ G+ A++G +G+GKST++ ++ Y P++G +
Sbjct: 9 LELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 160 LLDNVDIKTLQLRWLRDQ----IGLVNQEPALFAT-TILENILYGKPEATM-------AE 207
L+D K + RD I V+QE +L ++ ENI G+ E T
Sbjct: 66 LIDG---KPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGR-EPTRRFGLIDRKA 121
Query: 208 VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 267
+ A A + + P+ T VG+ LS Q+Q + IARA+ + ++L+LDE T+
Sbjct: 122 MRRRARELLARLGLDIDPD---TLVGD----LSIAQRQMVEIARALSFDARVLILDEPTA 174
Query: 268 ALDAGSESIVQEALDRLMV-----GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHE 321
AL E+ E L L+ G + ++HRL + + D + V++ G+VV T
Sbjct: 175 ALTV-KET---ERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP-- 228
Query: 322 ELIAKAGAYASLIRFQEMV-RNRDFANPSTRRSRS--TRLS-HSLSTK------SLSLRS 371
A + L+R MV R + P L +LS S ++R+
Sbjct: 229 --TAAETSEDELVRL--MVGRELEDLFPEPPEEGIGEPVLEVRNLSGGGKVRDVSFTVRA 284
Query: 372 G 372
G
Sbjct: 285 G 285
|
Length = 500 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 74/215 (34%), Positives = 106/215 (49%), Gaps = 19/215 (8%)
Query: 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD 176
+D S+ G+ V ++G SG GK+T++ +I AG + DI L + RD
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ-KRD 77
Query: 177 QIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGER 235
G+V Q ALF T+ +NI YG M E A A + G +
Sbjct: 78 -YGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-----GLPGSERKY 131
Query: 236 GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-SESIVQE--ALDRLMVGRTTVV 292
QLSGGQ+QR+A+ARA+ +P +LLLDE SALDA E + E L R +G TT++
Sbjct: 132 PGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR-RLGVTTIM 190
Query: 293 VAH----RLSTIRNVDTVAVIQQGQVVETGTHEEL 323
V H LS D + V+ G + + GT +E+
Sbjct: 191 VTHDQEEALSM---ADRIVVMNHGVIEQVGTPQEI 222
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-24
Identities = 87/302 (28%), Positives = 130/302 (43%), Gaps = 59/302 (19%)
Query: 720 STLDRSTRIDPDDPDAEPVETIRGEI------ELRHVDFAYPSRPDVV----------VF 763
S D + D D VET GE E +F ++ V
Sbjct: 2 SETDTAGTADASDGTDPEVETTSGESDEQTRDEWTDYEFDGDAKLSVEDLDVYYGDDHAL 61
Query: 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA-----GKVMIDGKDIRR--LNL 816
K ++ I AL+G SG GKS+ + + R D G V +DG+DI + +NL
Sbjct: 62 KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121
Query: 817 KSLRLKIGLVQQEPALFAASIFDNIAYG--KEG----------------ATEAEVVEAA- 857
LR ++G+V Q P F SI +NI+YG K G E E+VE +
Sbjct: 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSL 181
Query: 858 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 917
R A AL + + + + LSGGQ+QR+ IAR + +P ++L+DE SALD
Sbjct: 182 RQA-------ALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPI 234
Query: 918 SECVLQEALERLMRGRTTVLVAH------RLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971
+ +++ +E L T V+V H R+S V G G +VE ++
Sbjct: 235 ATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTG----GELVEYDDTDKIFEN 290
Query: 972 PD 973
P+
Sbjct: 291 PE 292
|
Length = 305 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-24
Identities = 64/225 (28%), Positives = 105/225 (46%), Gaps = 46/225 (20%)
Query: 100 IEFKNVTFSYPSRP---DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLI--ERFYDP 154
+ F+N+T + S P + ++ S G+ A++G SG+GKST+++ + R
Sbjct: 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63
Query: 155 NAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAAS 213
+G VL++ + R R IG V Q+ L T T+ E +++
Sbjct: 64 VSGEVLINGRPLD---KRSFRKIIGYVPQDDILHPTLTVRETLMF--------------- 105
Query: 214 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 273
AA RG LSGG+++R++IA ++ NP +L LDE TS LD+ S
Sbjct: 106 AAKL-----------------RG--LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS 146
Query: 274 ESIVQEALDRLM-VGRTTVVVAHRLST--IRNVDTVAVIQQGQVV 315
V L RL GRT + H+ S+ D + ++ QG+V+
Sbjct: 147 ALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 110 bits (275), Expect = 3e-24
Identities = 78/257 (30%), Positives = 128/257 (49%), Gaps = 20/257 (7%)
Query: 728 IDPDDPDAEPVETIRG-EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGK 786
++PD + ++ G I + + F + +R I G A+VG G GK
Sbjct: 619 LEPDSIERRTIKPGEGNSITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGK 677
Query: 787 SSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE 846
SS+++ + D G V + G + V Q+ + S+ +NI +GK
Sbjct: 678 SSLLSALLAEMDKVEGHVHMKGS-------------VAYVPQQAWIQNDSLRENILFGKA 724
Query: 847 GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILL 906
E + A + + LP+ +T +GE+GV LSGGQKQR+++ARAV N I L
Sbjct: 725 -LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYL 783
Query: 907 LDEATSALDAE-SECVLQEAL--ERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQG 963
D+ SA+DA + + + + E +++ +T +LV H +S + VD I V+ G+I E G
Sbjct: 784 FDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMG 843
Query: 964 SHSELVSRPDGAYSRLL 980
S+ EL+ R DGA++ L
Sbjct: 844 SYQELLQR-DGAFAEFL 859
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-24
Identities = 71/230 (30%), Positives = 115/230 (50%), Gaps = 20/230 (8%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E + ++ S+ + + + + G+ + ++G SG GK+TV+ LI F P++G +
Sbjct: 15 VELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 160 LLDNVDIKTL--QLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAAN 216
+LD DI + + R + V Q ALF T+ EN+ +G E
Sbjct: 72 MLDGQDITHVPAENR----HVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVME 127
Query: 217 AHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 275
A + L + +R QLSGGQ+QR+AIARA++ PK+LLLDE+ SALD
Sbjct: 128 ALRMVQL------EEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRK 181
Query: 276 IVQEALDRLM--VGRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTHEE 322
+Q L L +G T V V H + + D + V++ G++ + GT E
Sbjct: 182 QMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231
|
Length = 375 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 3e-24
Identities = 57/227 (25%), Positives = 110/227 (48%), Gaps = 24/227 (10%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
++ +N+T Y + S+ G ++G +G+GK+T++ ++ P++G +
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILE-----NILYGKPEATM-AEVEAAA 212
+D D+ Q + LR +IG + QE ++ T+ E L G P + A V+
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115
Query: 213 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272
N L + ++G LSGG ++R+ IA+A++ +P IL++DE T+ LD
Sbjct: 116 ELVN-------LGDRAKKKIG----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164
Query: 273 SESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 318
+ L L R ++ H + + ++ + VAV+ +G++V G
Sbjct: 165 ERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 3e-24
Identities = 58/179 (32%), Positives = 92/179 (51%), Gaps = 12/179 (6%)
Query: 104 NVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163
+++ SY +P D S+ +G+ V V+G SG GK+T+++LI F P+ G + L+
Sbjct: 8 HLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG 66
Query: 164 VDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFIT 222
I+ G+V Q AL +++N+ +G + +E A AH +
Sbjct: 67 RRIEGPGAER-----GVVFQNEALLPWLNVIDNVAFG---LQLRGIEKAQRREIAHQMLA 118
Query: 223 LLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL 281
L+ G + QLSGG +QR+ IARA+ P++LLLDE ALDA + +QE L
Sbjct: 119 LV--GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELL 175
|
Length = 259 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-24
Identities = 73/229 (31%), Positives = 114/229 (49%), Gaps = 21/229 (9%)
Query: 760 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL-KS 818
+V D + +R G+ L+G +G+GK+++ LI F PT+G V+ DG+DI L +
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI 72
Query: 819 LRLKIGLVQQEPALFAA-SIFDNI----------AYGKEGATEAEVVEAARAANVHGFVS 867
RL IG Q P LF ++ +N+ A E RA + V
Sbjct: 73 ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV- 131
Query: 868 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL-DAESECVLQEAL 926
L + P GE LS GQ++R+ IARA+ +P +LLLDE + L E+E L E +
Sbjct: 132 GLADLADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETE-ELAELI 186
Query: 927 ERL-MRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPD 973
L RG T +LV H + + + D + V+ GR++ +G+ E+ + P
Sbjct: 187 RELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNPR 235
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 71/232 (30%), Positives = 121/232 (52%), Gaps = 12/232 (5%)
Query: 100 IEFKNVTFSY-PSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 157
I+ +N+T Y P + + +I G+ V ++G +GSGKST++ + P +G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 158 HVLLDNVDI--KTLQLRWLRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEAAAS 213
+++D VDI K ++L +R ++GLV Q P LF TI ++I +G ++E E
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR 122
Query: 214 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALD-AG 272
A + + L Y + +LSGGQK+R+AIA + PKIL+LDE T+ LD G
Sbjct: 123 VKRAMNIVGLDYEDYKDK---SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
Query: 273 SESIVQEALD-RLMVGRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEE 322
+ I+ + + T ++V+H + + + D + V+ +G+ GT E
Sbjct: 180 RDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
Length = 287 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 4e-24
Identities = 55/198 (27%), Positives = 97/198 (48%), Gaps = 20/198 (10%)
Query: 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 805
+ ++ F+Y +++ D +L + AG+ AL G +G+GK+++ ++ ++G ++
Sbjct: 1 RIENISFSYKKGTEIL--DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58
Query: 806 IDGKDIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYG-KEGATEAEVVEAA-RAAN 861
++GK I+ K R IG V Q+ LF S+ + + G KE E E + +
Sbjct: 59 LNGKPIKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLD 115
Query: 862 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 921
++ P + LSGGQKQR+AIA A+L +L+ DE TS LD ++
Sbjct: 116 LYALKERHPLS-----------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMER 164
Query: 922 LQEALERLMRGRTTVLVA 939
+ E + L V+V
Sbjct: 165 VGELIRELAAQGKAVIVI 182
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-24
Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 26/233 (11%)
Query: 760 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN-LKS 818
+ D +L +R G+ L+G +G+GK+++ LI FY P++G V+ G+DI L +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 819 LRLKIGLVQQEPALFAA-SIFDNIA--------------YGKEGATEAEVVEAARAANVH 863
RL I Q LF ++ +N+A + E E E AR +
Sbjct: 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARE--LL 134
Query: 864 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 923
FV A P G LS GQ++R+ IARA+ P +LLLDE + L+ E L
Sbjct: 135 EFVGLGELAD-RPAGN----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA 189
Query: 924 EALERL--MRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPD 973
E + L G T +L+ H + + G+ D I V+ G ++ +G+ E+ + P
Sbjct: 190 ELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNPR 242
|
Length = 250 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 5e-24
Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 23/221 (10%)
Query: 118 FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG-----HVLLDNVDI-KTLQL 171
+ ++ PA + A++G SG GKST++ + R D G + +D DI + +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 172 RWLRDQIGLVNQEPALFATTILENILYG------KPEATMAEV--EAAASAANAHSFITL 223
LR ++G+V Q+P F +I EN+ YG K + + EV + AA
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAA-------- 130
Query: 224 LPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDR 283
L + ++ LSGGQ+QR+ IAR + P ++L+DE TSALD + ++E ++
Sbjct: 131 LWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEE 190
Query: 284 LMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
L T V+V H + R + D A G++VE + +
Sbjct: 191 LKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231
|
Length = 249 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 5e-24
Identities = 70/250 (28%), Positives = 121/250 (48%), Gaps = 28/250 (11%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IE +++ F Y + S+ P G A++G +G+GKST++ + Y P G V
Sbjct: 5 IEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEP--ALFATTILENILYG------KPEATMAEVEAA 211
+ ++ +W+R ++GLV Q+P +F++T+ +++ +G + VE A
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 212 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271
A F P LS GQK+R+AIA + +P +++LDE + LD
Sbjct: 123 LKAVRMWDFRDKPPY-----------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
Query: 272 GSESIVQEALDRLMVGRTTVVVA-HRLS-TIRNVDTVAVIQQGQVVETG-----THEELI 324
+ + E LDRL TV+VA H + D V V+++G+V+ G T E+++
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIV 231
Query: 325 AKAGAYASLI 334
+AG L+
Sbjct: 232 EQAGLRLPLV 241
|
Length = 274 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-24
Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 21/229 (9%)
Query: 100 IEFKNVTFSYPS-RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
++ +N+ Y + D + + S+ G+ VA+VG SGSGKST++ L+ +P +G
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 159 VLLDNVDIKTL---QLRWLRDQ-IGLVNQEPALFAT-TILENI----LYGKPEATMAEVE 209
VL + + L + LR++ +G + Q L T LEN+ L GK A+
Sbjct: 62 VLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER 121
Query: 210 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 269
A L G ++ R +LSGG++QR+AIARA++ P ++L DE T L
Sbjct: 122 AYE---------MLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNL 172
Query: 270 DAGSESIVQEALDRLMVGRTT--VVVAHRLSTIRNVDTVAVIQQGQVVE 316
D + I+ + + L T +VV H L + +D V ++ GQ+
Sbjct: 173 DNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 5e-24
Identities = 70/215 (32%), Positives = 111/215 (51%), Gaps = 18/215 (8%)
Query: 765 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR----RLNLKSLR 820
D NL I G A +G +GSGKS+++ L+ + PT G V +D I ++K +R
Sbjct: 25 DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIR 84
Query: 821 LKIGLVQQ--EPALFAASIFDNIAYGKE--GATEAEVVEAARAA-NVHGFVSALPNAYKT 875
K+GLV Q E LF ++ ++A+G + G ++ E AR + G +L K
Sbjct: 85 KKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFE--KN 142
Query: 876 PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRT 934
P +LSGGQ +R+AIA + P IL+LDE T+ LD + L ++L + G T
Sbjct: 143 P-----FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMT 197
Query: 935 TVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968
VLV H + + D + V++ G++V G ++
Sbjct: 198 IVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
Length = 280 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 6e-24
Identities = 75/258 (29%), Positives = 124/258 (48%), Gaps = 24/258 (9%)
Query: 100 IEFKNVTFSY-PSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 157
I F+ V Y P + D ++ P+G VA++G +GSGKST++ + P +G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 158 HVLLDNVDI----KTLQLRWLRDQIGLVNQ--EPALFATTILENILYGKPEATMAEVEAA 211
V + I K +L+ LR ++G+V Q E LF T+ ++I +G ++E +A
Sbjct: 63 TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAK 122
Query: 212 ASAANAHSFITLLPNGYSTQVGERG-VQLSGGQKQRIAIARAMLKNPKILLLDEATSALD 270
A I L+ G ++ R +LSGGQ +R+AIA + P++L+LDE T+ LD
Sbjct: 123 QKAREM---IELV--GLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177
Query: 271 AGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327
+ E +L G TTV+V H + D + V+ +G V GT E+ A
Sbjct: 178 PKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADP 237
Query: 328 GAYASL-------IRFQE 338
++ ++F+
Sbjct: 238 DELEAIGLDLPETVKFKR 255
|
Length = 290 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 7e-24
Identities = 65/194 (33%), Positives = 97/194 (50%), Gaps = 19/194 (9%)
Query: 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--PTA---GKVMIDGKDIRRLNLK 817
K +L + AL+G SG GKS+ + + R D P G V + G++I N
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 818 S--LRLKIGLVQQEPALFAASIFDNIAYG------KEGATEAEVVEAARAANVHGFVSAL 869
LR ++G+V Q+P F SI++N+ YG K+ A E VE + +A+
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQ------AAI 134
Query: 870 PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL 929
+ K + E + LSGGQ+QR+ IAR + P ++LLDE TSALD S ++ L L
Sbjct: 135 WDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL 194
Query: 930 MRGRTTVLVAHRLS 943
T +LV H +
Sbjct: 195 RDQYTIILVTHSMH 208
|
Length = 252 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 7e-24
Identities = 72/230 (31%), Positives = 112/230 (48%), Gaps = 28/230 (12%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG-----KVMIDGKDI--RRLNL 816
+D ++ IR + +G SG GKS+V+ + R D G V G+D+ + ++
Sbjct: 25 RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84
Query: 817 KSLRLKIGLVQQEPALFAASIFDNIAYG-----KEGATEAEVVEAARAANVHGFVSALPN 871
+R IG+V Q+P F+ SIFDN+A+G +G V A + A AL +
Sbjct: 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGA-------ALWD 137
Query: 872 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR 931
K + G+ LSGGQ+QR+ IARA+ P +LLLDE SALD + ++E + L +
Sbjct: 138 EVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK 197
Query: 932 GRTTVLVAHRLSTIRGVD------CIGVVQDGR---IVEQGSHSELVSRP 972
T LV H + V + + Q R +VE G +++ P
Sbjct: 198 DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNP 247
|
Length = 261 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 8e-24
Identities = 58/190 (30%), Positives = 96/190 (50%), Gaps = 11/190 (5%)
Query: 109 YPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN--VDI 166
YP P+V+ + + G+ +A++G +G+GKST++ + P +G VL+D +D
Sbjct: 1 YPGGPEVL--KGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 167 KTLQLRWLRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEAAASAANAHSFITLL 224
L R ++GLV Q+P LFA + +++ +G ++E E A + +
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS 118
Query: 225 PNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL 284
G + LSGG+K+R+AIA A+ P +LLLDE T+ LD + L RL
Sbjct: 119 --GLRERPTH---CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRL 173
Query: 285 MVGRTTVVVA 294
TVV++
Sbjct: 174 RAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 8e-24
Identities = 68/240 (28%), Positives = 122/240 (50%), Gaps = 27/240 (11%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----P 154
IE +N+ + D I ++ ++ P A++G SG GKST + + R D
Sbjct: 4 IEVENLNTYFD---DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60
Query: 155 NAGHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYG------KPEATMA 206
+ GH+ LD VDI + + LR ++G+V Q+P F +I +N+ YG E +
Sbjct: 61 HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE 120
Query: 207 EV--EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE 264
E E+ +AA L + ++ + + LSGGQ+QR+ IAR + +P+++L+DE
Sbjct: 121 ERVEESLKAAA--------LWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDE 172
Query: 265 ATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDT-VAVIQQGQVVETGTHEEL 323
SALD S + +++ + +L T V+V H + V + G+++E+G +++
Sbjct: 173 PCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232
|
Length = 250 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 9e-24
Identities = 72/241 (29%), Positives = 117/241 (48%), Gaps = 24/241 (9%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
I ++V F Y S KD + I GQ ++VG +GSGKS++ L+ +G++
Sbjct: 8 IVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPA-LFAASI--FDNIAYGKEGAT------EAEVVE 855
+ + I N + LR IG+V Q P F SI +D +A+G E V E
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYD-VAFGLENHAVPYDEMHRRVSE 125
Query: 856 AARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 915
A + ++ PNA LSGGQKQR+AIA + NP++++LDEATS LD
Sbjct: 126 ALKQVDMLERADYEPNA-----------LSGGQKQRVAIAGVLALNPSVIILDEATSMLD 174
Query: 916 AESECVLQEALERLMRGR--TTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPD 973
++ L + + ++ T + + H LS D + V+ G + ++G+ +E+ +
Sbjct: 175 PDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAE 234
Query: 974 G 974
Sbjct: 235 E 235
|
Length = 269 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 9e-24
Identities = 63/213 (29%), Positives = 114/213 (53%), Gaps = 15/213 (7%)
Query: 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLR 820
V+ +D ++ + G+ ++GA+GSGKS+++ + ++ + G+V + +S
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE---------RS-- 722
Query: 821 LKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGER 880
I V Q+ + A++ NI + E A + +A R + + ++ L +T +GE+
Sbjct: 723 --IAYVPQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEK 779
Query: 881 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE-SECVLQEALERLMRGRTTVLVA 939
GV LSGGQK R+++ARAV N + LLD+ SALDA E V++E + G+T VL
Sbjct: 780 GVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLAT 839
Query: 940 HRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
H++ + D + + DGR+ GS ++ +
Sbjct: 840 HQVHVVPRADYVVALGDGRVEFSGSSADFMRTS 872
|
Length = 1560 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-23
Identities = 55/178 (30%), Positives = 94/178 (52%), Gaps = 16/178 (8%)
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 818
D + + +L +RAG+ A+ G SG GKS+++ ++ PT+G ++ +G+D+ L ++
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74
Query: 819 LRLKIGLVQQEPALFAASIFDNI-----AYGKEGATEAEVVEAARAANVHGFVSALPNAY 873
R ++ Q PALF ++ DN+ + A + AR A ++
Sbjct: 75 YRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILT------ 128
Query: 874 KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR 931
+ +LSGG+KQRIA+ R + P ILLLDE TSALD ++ ++E + R +R
Sbjct: 129 -----KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVR 181
|
Length = 223 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 1e-23
Identities = 74/220 (33%), Positives = 115/220 (52%), Gaps = 29/220 (13%)
Query: 127 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL-------------QLRW 173
AG ++++G SGSGKST + I P+ G ++++ I + QLR
Sbjct: 30 AGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRL 89
Query: 174 LRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQV 232
LR ++ +V Q L++ T+LEN++ EA + + + A + L G +
Sbjct: 90 LRTRLTMVFQHFNLWSHMTVLENVM----EAPIQVLGLSKQEARERAVKYLAKVGIDERA 145
Query: 233 -GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV----- 286
G+ V LSGGQ+QR++IARA+ P++LL DE TSALD +V E L R+M
Sbjct: 146 QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDP---ELVGEVL-RIMQQLAEE 201
Query: 287 GRTTVVVAHRLSTIRNVDT-VAVIQQGQVVETGTHEELIA 325
G+T VVV H + R+V + V + QG++ E G E+L
Sbjct: 202 GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFG 241
|
Length = 257 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 24/234 (10%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
I+ + Y + D ++ P G+T+ ++G SG+GKS+++ ++ P +G +
Sbjct: 3 IQLNGINCFYGAHQ---ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 160 LLDN--VDIKTL----QLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAA 212
+ D +R LR +G+V Q+ L+ T+ EN++ EA + +
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLI----EAPCRVLGLSK 115
Query: 213 SAANAHSFITLLPNGYSTQVGER-GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALD- 270
A A + LL +R + LSGGQ+QR+AIARA++ P++LL DE T+ALD
Sbjct: 116 DQALARA-EKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
Query: 271 ---AGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDT-VAVIQQGQVVETGTH 320
A SI++E + G T V+V H + R + V ++ G +VE G
Sbjct: 175 EITAQIVSIIKELAE---TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225
|
Length = 242 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 2e-23
Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 28/229 (12%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+ L + F+Y +P F+L G+ A+VG SGSGKS+++ LI F P +G+V
Sbjct: 1 VRLDKIRFSYGEQP-----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG-----KEGATEAEVVE-AA 857
+I+G D+ + ++ QE LFA ++ N+ G K A + + +E A
Sbjct: 56 LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 858 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 917
+ G LP +LSGG++QR+A+AR ++++ +LLLDE +ALD
Sbjct: 114 ARVGLAGLEKRLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPA 162
Query: 918 SECVLQEALERL--MRGRTTVLVAHRLSTIRGVDCIGV-VQDGRIVEQG 963
+ + + L T ++V H+ + + V + +GRI QG
Sbjct: 163 LRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 2e-23
Identities = 75/236 (31%), Positives = 123/236 (52%), Gaps = 21/236 (8%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+E+ ++ F Y DV + I G+ +++G +GSGKS+ LI+ ++ GKV
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEAEVV----EA 856
IDG+ + N+ +LR KIG+V Q P A++ D++A+G E G E++ EA
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 857 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 916
A N+ F + P +LSGGQKQR+A+A + P I++LDE+TS LD
Sbjct: 125 LLAVNMLDFKTREP-----------ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP 173
Query: 917 ESECVLQEALERLM-RGRTTVL-VAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 970
+ + + + + TVL + H L D I V++ G I+++ + SEL +
Sbjct: 174 TGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229
|
Length = 277 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 74/244 (30%), Positives = 119/244 (48%), Gaps = 27/244 (11%)
Query: 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PT 800
E+ ++F Y K+ N+ + Q AL+G SG GKS+ + R +D
Sbjct: 18 EVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHY 74
Query: 801 AGKVMI--DGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-------KEGAT 849
G++++ D +I ++ +R++I +V Q+P F SIF+N+AYG +
Sbjct: 75 EGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSIL 134
Query: 850 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 909
E V A R A AL + K +G+ LSGGQ+QR+ IARA+ +P ILL DE
Sbjct: 135 EERVENALRNA-------ALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDE 187
Query: 910 ATSALDAESECVLQEALERLMRGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSEL 968
TSALD + ++E + L T ++V H + R D + G ++E G+ +
Sbjct: 188 PTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI 247
Query: 969 VSRP 972
+P
Sbjct: 248 FIKP 251
|
Length = 265 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 71/240 (29%), Positives = 118/240 (49%), Gaps = 34/240 (14%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKST---VVSLIERFYDPNA 156
I+ + Y + +F D ++ P G+T+ ++G SG+GKS+ V++L+E P +
Sbjct: 3 IQLNGINCFYGA--HQALF-DITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRS 56
Query: 157 GHV--------LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAE 207
G + K +R LR +G+V Q+ L+ T+ +N++ EA
Sbjct: 57 GTLNIAGNHFDFSKTPSDK--AIRELRRNVGMVFQQYNLWPHLTVQQNLI----EAPCRV 110
Query: 208 VEAAASAANAHSFITLLPNGYSTQVGER-GVQLSGGQKQRIAIARAMLKNPKILLLDEAT 266
+ + A A + LL +R + LSGGQ+QR+AIARA++ P++LL DE T
Sbjct: 111 LGLSKDQALARA-EKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPT 169
Query: 267 SALD----AGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDT-VAVIQQGQVVETGTHE 321
+ALD A SI++E + G T V+V H + R + V ++ G +VE G
Sbjct: 170 AALDPEITAQIVSIIRELAE---TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-23
Identities = 71/225 (31%), Positives = 116/225 (51%), Gaps = 17/225 (7%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 821
V K+ + ++ GQ A+ G++GSGKSS++ +I +P+ GK+ G+
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR------------ 488
Query: 822 KIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERG 881
I Q + +I DNI +G E +A + ++ P KT +GE G
Sbjct: 489 -ISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGG 546
Query: 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC-VLQEALERLMRGRTTVLVAH 940
+ LSGGQ+ RI++ARAV K+ + LLD + LD +E + + L +LM +T +LV
Sbjct: 547 ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTS 606
Query: 941 RLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPDGAYSRLLQLQH 984
+L ++ D I ++ +G G+ SEL + RPD + S LL L+
Sbjct: 607 KLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFS-SLLLGLEA 650
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 3e-23
Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 14/223 (6%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E +NVT + + + D ++ G+ V ++G SG GK+T + +I +P +G +
Sbjct: 1 VELENVTKRFGNVTAL---DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAH 218
+ D+ L + RD I +V Q AL+ T+ +NI +G + +V
Sbjct: 58 YIGGRDVTDLPPK-DRD-IAMVFQNYALYPHMTVYDNIAFG---LKLRKVPKDEIDERVR 112
Query: 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 278
LL + + QLSGGQ+QR+A+ RA+++ PK+ L+DE S LDA ++
Sbjct: 113 EVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMR 170
Query: 279 EALDRLM--VGRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETG 318
L RL +G TT+ V H ++ + D +AV+ GQ+ + G
Sbjct: 171 AELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 3e-23
Identities = 72/221 (32%), Positives = 107/221 (48%), Gaps = 23/221 (10%)
Query: 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA---GHVLLDNVDI--KTLQL 171
D + P A +G SG GKST + + R D G + LD DI L +
Sbjct: 36 FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95
Query: 172 RWLRDQIGLVNQEPALFATTILENILYG-------KPEATMAE-VEAAASAANAHSFITL 223
LR ++G+V Q+P F +I EN+ YG + +A + E VE + A
Sbjct: 96 VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAG------- 148
Query: 224 LPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDR 283
L ++ E G LSGGQ+QR+ IARA+ +P+++L+DE SALD + + V+E +D
Sbjct: 149 LWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDE 208
Query: 284 LMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
L T V+V H + V A G +VE G E++
Sbjct: 209 LRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM 249
|
Length = 267 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 3e-23
Identities = 69/212 (32%), Positives = 101/212 (47%), Gaps = 22/212 (10%)
Query: 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA---GHVLLDNVDI--KTLQLR 172
+ F K A++G SGSGKST + + R D A G +L +DI K + +
Sbjct: 38 GIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97
Query: 173 WLRDQIGLVNQEPALFATTILENILYG------KPEATMAE-VEAAASAANAHSFITLLP 225
+R IG+V Q P FA +I ENI + K + + E VE + A L
Sbjct: 98 EMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAA-------LW 150
Query: 226 NGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM 285
+ + + + LSGGQ+QR+ IARA+ P ILL+DE SALD S ++E + L
Sbjct: 151 DQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK 210
Query: 286 VGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVE 316
T ++V H + R D A G ++E
Sbjct: 211 KNYTIIIVTHNMQQAARASDYTAFFYLGDLIE 242
|
Length = 267 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.9 bits (249), Expect = 3e-23
Identities = 69/218 (31%), Positives = 110/218 (50%), Gaps = 29/218 (13%)
Query: 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN-----AGHVLLDNVDI-----KTLQLRW 173
F+P T A++G SGSGKST++ I R D N G ++ + +I T+ LR
Sbjct: 28 FYPNEIT-ALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLR- 85
Query: 174 LRDQIGLVNQEPALFATTILENILYG------KPEATMAE-VEAAASAANAHSFITLLPN 226
+IG+V Q+P F +I EN++YG K + + E VE + A+ + +
Sbjct: 86 --KEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGAS-------IWD 136
Query: 227 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV 286
++ + + LSGGQ+QR+ IAR + +PKI+LLDE TSALD S ++E L L
Sbjct: 137 EVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD 196
Query: 287 GRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEEL 323
T ++V + R D G ++E +++
Sbjct: 197 DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234
|
Length = 252 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 3e-23
Identities = 77/238 (32%), Positives = 113/238 (47%), Gaps = 33/238 (13%)
Query: 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV-----MIDGKDIRRLN 815
V +L ++ G+ A++G SGSGK++++ I P AG + ID R L+
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTA--RSLS 74
Query: 816 -----LKSLRLKIGLVQQEPALFA-ASIFDNIAYGK---EGATEAEVVEAARAANVHGFV 866
++ LR +G V Q LF ++ +NI G +G + E AR +
Sbjct: 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGL 134
Query: 867 SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE-----SECV 921
+ +Y +LSGGQ+QR+AIARA+ P ++L DE TSALD E +
Sbjct: 135 AGKETSYPR-------RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTI 187
Query: 922 LQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD-GRIVEQGSHSELVSRPDGAYSR 978
Q A E+ RT V+V H +S R V + D GRIVEQG L + P +R
Sbjct: 188 RQLAQEK----RTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTR 241
|
Length = 250 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 4e-23
Identities = 70/228 (30%), Positives = 109/228 (47%), Gaps = 34/228 (14%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+ V + Y P F + G+ VA++G SG+GKST+++LI F +P +G +
Sbjct: 1 LALDKVRYEYEHLP----ME-FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI 55
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG-----KPEATMAE-VEAAA 212
+++ L + + ++ QE LFA T+ +NI G K A E V AA
Sbjct: 56 KVNDQSHTGLAPY--QRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAA 113
Query: 213 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272
++ LP QLSGGQ+QR+A+AR +++ ILLLDE SALD
Sbjct: 114 QQVGIADYLDRLPE-----------QLSGGQRQRVALARCLVRPNPILLLDEPFSALD-- 160
Query: 273 SESIVQEALDRLMV-----GRTTVVVAHRLS-TIRNVDTVAVIQQGQV 314
+ +E L + RT ++V H LS +AV+ QG++
Sbjct: 161 -PLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 4e-23
Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 14/228 (6%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E +N+T S+ + V D S+ G+ A++G SG GKST++ ++ F P AG +
Sbjct: 20 LEIRNLTKSFDGQHAV---DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI 76
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAH 218
+LD VD+ + + I ++ Q ALF T+ +NI +G + + + E A+
Sbjct: 77 MLDGVDLS--HVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEML 134
Query: 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 278
+ + + QLSGGQ+QR+A+AR++ K PK+LLLDE ALD +Q
Sbjct: 135 GLVHMQEFA-----KRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQ 189
Query: 279 -EALDRL-MVGRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTHEEL 323
E +D L VG T V+V H + + +A++ +G+ V+ G EE+
Sbjct: 190 LEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
|
Length = 377 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 98.7 bits (247), Expect = 4e-23
Identities = 66/220 (30%), Positives = 106/220 (48%), Gaps = 17/220 (7%)
Query: 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178
D S G+ ++G +G+GK+T+ +LI F P +G VL D DI L ++
Sbjct: 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPH-EIARL 75
Query: 179 GLV--NQEPALFAT-TILENIL--------YGKPEATMAEVEAAASAANAHSFITLLPNG 227
G+ Q P LF T+LEN++ G A E A A + + G
Sbjct: 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARER-AEELLERV--G 132
Query: 228 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV- 286
+ +LS GQ++R+ IARA+ +PK+LLLDE + L+ + E + L
Sbjct: 133 LADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRER 192
Query: 287 GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIA 325
G T ++V H + + ++ D V V+ QG+V+ GT +E+
Sbjct: 193 GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 4e-23
Identities = 63/214 (29%), Positives = 112/214 (52%), Gaps = 20/214 (9%)
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN--- 815
D V K +L I G+ A+VG+SGSGKS+++ L+ +PT+G+V+ +G+ + +L+
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76
Query: 816 LKSLR-LKIGLVQQEPALFAA-SIFDNIAY----GKEGATEAEVVEAARAANVHGFVSAL 869
LR K+G + Q L + +N+A GK+ EA+ V
Sbjct: 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVG------ 130
Query: 870 PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL 929
+ + R +LSGG++QR+AIARA++ P+++L DE T LD + ++ + + L
Sbjct: 131 ---LEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187
Query: 930 MRGRTT--VLVAHRLSTIRGVDCIGVVQDGRIVE 961
R T ++V H L + +D + ++DG++
Sbjct: 188 NRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.3 bits (247), Expect = 5e-23
Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 23/238 (9%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA- 156
+E KN+ Y + D ++ K A++G SG GKST + + R D N
Sbjct: 5 MESKNLNLWYGEKQ---ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK 61
Query: 157 --GHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYG------KPEATMA 206
G VLLD +I K + + LR ++G+V Q+P F +I +N+ YG K + +
Sbjct: 62 IEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELD 121
Query: 207 EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEAT 266
++ A A L + + + ++LSGGQ+QR+ IAR + P ++L+DE T
Sbjct: 122 KIVEWALKKAA------LWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPT 175
Query: 267 SALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
SALD S +++ + L T V+V H + V D A G ++E E++
Sbjct: 176 SALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233
|
Length = 251 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.3 bits (247), Expect = 5e-23
Identities = 71/232 (30%), Positives = 108/232 (46%), Gaps = 11/232 (4%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PN-- 155
I K+V SY + S+ F + A++G SG GKST + + R D N
Sbjct: 5 ISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61
Query: 156 -AGHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAA 212
G + + +I + L LR ++G+V Q+P F ++ +N+ YG A + + E
Sbjct: 62 ITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELID 121
Query: 213 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272
+ + SGGQ+QRI IARA+ PK++LLDE TSALD
Sbjct: 122 QRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPI 181
Query: 273 SESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
S S ++E L L T ++V H L + D A + G ++E G EE+
Sbjct: 182 SSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
|
Length = 251 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.9 bits (246), Expect = 5e-23
Identities = 69/215 (32%), Positives = 116/215 (53%), Gaps = 11/215 (5%)
Query: 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA---GHVLLDNVDI--KTLQL 171
+D S+ FP A++G SG GKSTV+ I R +D P+A G +LLD+ DI + +
Sbjct: 21 KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80
Query: 172 RWLRDQIGLVNQEPALF-ATTILENILYG-KPEATMAEVEAAASAANAHSFITLLPNGYS 229
+R ++G+V Q+P F A +I +N++ G K + EA ++ + L +
Sbjct: 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALW-DEVK 139
Query: 230 TQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRT 289
++ ++LSGGQ+QR+ IAR + P+++L+DE SALD S ++E ++ L T
Sbjct: 140 DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYT 199
Query: 290 TVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
++V H + V D A G +VE G +++
Sbjct: 200 IIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234
|
Length = 252 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 5e-23
Identities = 72/232 (31%), Positives = 122/232 (52%), Gaps = 18/232 (7%)
Query: 100 IEFKNVTFSYPSRPDV---IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 156
I +NV+++Y + +F D ++ G A +G +GSGKST++ L+ + P
Sbjct: 3 INLQNVSYTYQAGTPFEGRALF-DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 157 GHVLLDNVDI----KTLQLRWLRDQIGLVNQ--EPALFATTILENILYGKPEATMAEVEA 210
G V +D+ I K ++ +R ++GLV Q E LF T+L+++ +G +++ EA
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA 121
Query: 211 AASAANAHSFITLLPNGYSTQVGERG-VQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 269
A A + + G S + E+ +LSGGQ +R+AIA + PKIL+LDE T+ L
Sbjct: 122 EALAREKLALV-----GISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGL 176
Query: 270 DAGSESIVQEALDRL-MVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGT 319
D + +L G T V+V H + + N D V V+++G++V +G
Sbjct: 177 DPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
Length = 280 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 5e-23
Identities = 68/219 (31%), Positives = 110/219 (50%), Gaps = 24/219 (10%)
Query: 114 DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW 173
D I + S+ AG+ +A+ G SG GKST++ ++ P +G +L + D+ TL+
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74
Query: 174 LRDQIGLVNQEPALFATTILENILY------GKPEATMAEVEAAASAANAHSFITLLPNG 227
R Q+ Q PALF T+ +N+++ +P+ A ++ A A S +T
Sbjct: 75 YRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAA-LDLLARFALPDSILT----- 128
Query: 228 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV- 286
+ +LSGG+KQRIA+ R + PKILLLDE TSALD ++ ++E + R +
Sbjct: 129 ------KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVRE 182
Query: 287 -GRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTHEEL 323
+ + H + IR+ D V +Q G G +E
Sbjct: 183 QNVAVLWITHDKDQAIRHADKVITLQPGHA---GEMQEA 218
|
Length = 223 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 5e-23
Identities = 68/208 (32%), Positives = 105/208 (50%), Gaps = 15/208 (7%)
Query: 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI----KTLQLRWLRDQIGLV 181
P A+ G SGSGK+T++ LI P+ G ++L+ + K + L + +IG V
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 182 NQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240
QE LF ++ N+ YG M + + I LL G +G +LS
Sbjct: 81 FQEARLFPHLSVRGNLRYG-----MKRARPSERRISFERVIELL--GIGHLLGRLPGRLS 133
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLS 298
GG+KQR+AI RA+L +P++LL+DE +ALD + + L+RL G + V+H L
Sbjct: 134 GGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ 193
Query: 299 TI-RNVDTVAVIQQGQVVETGTHEELIA 325
+ R D V V++ G+V G E+ A
Sbjct: 194 EVLRLADRVVVLEDGRVAAAGPIAEVWA 221
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 7e-23
Identities = 69/240 (28%), Positives = 110/240 (45%), Gaps = 24/240 (10%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE R D Y + N A++G +G+GKS++ PT+G V
Sbjct: 4 IETR--DLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYG------KEGATEAEVVEA 856
+I G+ I + N++ +R +GLV Q P +F+ ++ +IA+G E V A
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 857 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 916
+ +P+ LSGG+K+R+AIA + P +L+LDE T+ LD
Sbjct: 122 LHMLGLEELRDRVPH-----------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDP 170
Query: 917 ESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPD 973
+ L + L L G T + H+L + + D I V+ GRIV G+ E+ +PD
Sbjct: 171 QGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230
|
Length = 277 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 9e-23
Identities = 69/219 (31%), Positives = 113/219 (51%), Gaps = 19/219 (8%)
Query: 765 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI----RRLNLKSLR 820
D + + A+ G SGSGK+++I LI P G+++++G+ + + + L +
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74
Query: 821 LKIGLVQQEPALFA-ASIFDNIAYGKEGATEAE-VVEAARAANVHGFVSALPNAYKTPVG 878
+IG V QE LF S+ N+ YG + A +E + R + G +
Sbjct: 75 RRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGI---------GHLL 125
Query: 879 ERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTT 935
R +LSGG+KQR+AI RA+L +P +LL+DE +ALD + + LERL G
Sbjct: 126 GRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185
Query: 936 VLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPD 973
+ V+H L + R D + V++DGR+ G +E+ + PD
Sbjct: 186 LYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 1e-22
Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 13/225 (5%)
Query: 745 IELRHVDFAYPS-RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
IE+ H+ ++ + K L ++ G++ A+VG SGSGKS+++A++ DP++G+
Sbjct: 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66
Query: 804 VMIDGKDIRRLN---LKSLRLK-IGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAAR 858
V + G+ + +L+ +LR + +G V Q L + +N+A E E+ A
Sbjct: 67 VRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG 126
Query: 859 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 918
A + V P QLSGG++QR+A+ARA P +L DE T LD +
Sbjct: 127 AKALLEAVGLGKRLTHYP-----AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRAT 181
Query: 919 ECVLQEALERLMRGR--TTVLVAHRLSTIRGVDCIGVVQDGRIVE 961
+ + L L R R T VLV H D ++ GR+VE
Sbjct: 182 GDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 1e-22
Identities = 54/188 (28%), Positives = 99/188 (52%), Gaps = 11/188 (5%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
++L++V + + + + +RAG+ + + G SG GKS+++ ++ PT+G +
Sbjct: 8 LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHG 864
+ +G+DI L + R ++ Q P LF +++DN+ + + + A ++
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQ-PDPAIFLDDLER 123
Query: 865 FVSALP-NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 923
F ALP + E LSGG+KQRI++ R + P +LLLDE TSALD ++ +
Sbjct: 124 F--ALPDTILTKNIAE----LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVN 177
Query: 924 EALERLMR 931
E + R +R
Sbjct: 178 EIIHRYVR 185
|
Length = 225 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 2e-22
Identities = 67/211 (31%), Positives = 103/211 (48%), Gaps = 21/211 (9%)
Query: 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLD--NVDIKTLQLR 172
D S+ P + A++G SG GKST + I R D G + NV +
Sbjct: 57 DVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV 116
Query: 173 WLRDQIGLVNQEPALFATTILENILYG-----KPEATMAEVEAAASAANAHSFITLLPNG 227
LR +IG+V Q+P F +I +N+ YG VE + A L +
Sbjct: 117 ALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRA-------ALWDE 169
Query: 228 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG 287
Q+ G+ LSGGQ+QR+ IARA+ +P+++L+DE SALD + S +++ ++ L
Sbjct: 170 VKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE 229
Query: 288 RTTVVVAHRL-STIRNVDTVAV-IQQGQVVE 316
T V+V H + R D AV + G++VE
Sbjct: 230 YTVVIVTHNMQQAARISDKTAVFLTGGELVE 260
|
Length = 285 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (244), Expect = 2e-22
Identities = 65/190 (34%), Positives = 102/190 (53%), Gaps = 19/190 (10%)
Query: 765 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--PTA---GKVMIDGKDI--RRLNLK 817
D +L+I A + A +G SG GKS+++ R D P A G+++ ++I ++N
Sbjct: 38 DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97
Query: 818 SLRLKIGLVQQEPALFAASIFDNIAY-----GKEGATEAEVVEAARAANVHGFVSALPNA 872
LR ++G+V Q P F SI++NIA+ G +G + V ++ R A A+
Sbjct: 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRA-------AIWEE 150
Query: 873 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG 932
K + E+G LSGGQ+QR+ IARA+ P +LL+DE SALD S ++E L
Sbjct: 151 VKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQ 210
Query: 933 RTTVLVAHRL 942
T ++V H +
Sbjct: 211 YTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.4 bits (242), Expect = 2e-22
Identities = 74/253 (29%), Positives = 125/253 (49%), Gaps = 28/253 (11%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----P 799
I+++ + F Y + + + ++ I + A++G SG GKS+ I + R +
Sbjct: 8 IKVKDLSFYYNTSKAI---EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 800 TAGKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEA------ 851
G V G++I R+N+ LR +IG+V Q P F SI++N+AYG + +
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124
Query: 852 EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT 911
E+VE+A +AL K + + + LSGGQ+QR+ IARA+ P +LL+DE
Sbjct: 125 EIVESALKG------AALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178
Query: 912 SALDAESECVLQEALERLMRGRTTVLVAH------RLSTIRGVDCIGVVQDGRIVEQGSH 965
SALD + ++E + L T +V H R+S + G++VE G
Sbjct: 179 SALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVT 238
Query: 966 SELVSRPDGAYSR 978
+++ S P + +R
Sbjct: 239 TQIFSNPLDSRTR 251
|
Length = 259 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.7 bits (240), Expect = 3e-22
Identities = 69/236 (29%), Positives = 117/236 (49%), Gaps = 13/236 (5%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG-- 157
I+ + V F Y + ++ ++ FP + A++G SG GKST++ + R D +G
Sbjct: 5 IKIRGVNFFYHKHQ---VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 158 ---HVLLDNVDIKT--LQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAA 212
VLLDN +I + L + LR ++G+V Q+P F +I +N+ +G P ++
Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFG-PRMLGTTAQSRL 120
Query: 213 SAANAHSF-ITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271
S L + + + G+ LSGGQ+QR+ IAR + P+++L+DE SALD
Sbjct: 121 DEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDP 180
Query: 272 GSESIVQEALDRLMVGRTTVVVAHRL-STIRNVDTVAVIQQGQVVETGTHEELIAK 326
S ++E + L T +V H + R D + G +VE G E+ ++
Sbjct: 181 VSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR 236
|
Length = 251 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 3e-22
Identities = 77/247 (31%), Positives = 125/247 (50%), Gaps = 28/247 (11%)
Query: 100 IEFKNVTFSYPS-----RPDVIIFR---DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF 151
+E +++ +P R V R S+ G+T+ +VG SGSGKST+ + R
Sbjct: 277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL 336
Query: 152 YDPNAGHVLLDNVDIKTL---QLRWLRDQIGLVNQEP--AL-----FATTILENILYGKP 201
P+ G + D DI L ++R LR ++ +V Q+P +L I E + +P
Sbjct: 337 -IPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP 395
Query: 202 EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILL 261
+ + AE + A + L P + E SGGQ+QRIAIARA++ P+++L
Sbjct: 396 KLSAAERDQRVIEALEE--VGLDPATRNRYPHE----FSGGQRQRIAIARALILKPELIL 449
Query: 262 LDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 318
LDE TSALD ++ V + L L G + + ++H L+ +R + V V++ G++VE G
Sbjct: 450 LDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQG 509
Query: 319 THEELIA 325
E + A
Sbjct: 510 PTEAVFA 516
|
Length = 534 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.7 bits (243), Expect = 3e-22
Identities = 74/236 (31%), Positives = 115/236 (48%), Gaps = 35/236 (14%)
Query: 116 IIFRDFSIF---FPAGKTV----------AVVGGSGSGKSTVVSLIERFYD--PN---AG 157
++ ++FSI+ F A K V A++G SG GKST + I R D P+ G
Sbjct: 40 VVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTG 99
Query: 158 HVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYG------KPEATMAE-V 208
++ D DI K LR +IG+V Q+P F +I +NI YG + + E V
Sbjct: 100 ALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIV 159
Query: 209 EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSA 268
E + A L + S ++ + + LSGGQ+QR+ +AR + P+ILLLDE TSA
Sbjct: 160 EKSLRKA-------ALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSA 212
Query: 269 LDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
LD + + +++ + L T ++V H + V D +G +VE +L
Sbjct: 213 LDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268
|
Length = 286 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 3e-22
Identities = 56/232 (24%), Positives = 109/232 (46%), Gaps = 21/232 (9%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
++ +N+T +Y + D S+ G+ ++G +G+GK+T + ++ P +G
Sbjct: 1 LQIRNLTKTYKKGTKPAV-DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENI-----LYGKPEATM-AEVEAAA 212
++ I+T + R +G Q ALF T+ E++ L G P++ + EVE
Sbjct: 60 YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLL 118
Query: 213 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272
+ LSGG K+++++A A++ P +LLLDE TS LD
Sbjct: 119 RVLGLTDKAN-------KRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPA 167
Query: 273 SESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
S + + + + GR+ ++ H + + D +A++ G++ G+ +EL
Sbjct: 168 SRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 3e-22
Identities = 65/230 (28%), Positives = 121/230 (52%), Gaps = 29/230 (12%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+E+R + +P VV D +L ++ G+ AL+G +G+GKS+++ ++ Y P +G++
Sbjct: 5 LEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 805 MIDGKDIRRLNLKS----LRLKIGLVQQEPALF-AASIFDNIAYGKEGAT------EAEV 853
+DGK++R +KS +RL IG+V Q L ++ +NI G E +
Sbjct: 62 RVDGKEVR---IKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQAR 118
Query: 854 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 913
+ +G P+A V + LS G++QR+ I +A+ + +L+LDE T+
Sbjct: 119 ARIKELSERYGL-PVDPDAK---VAD----LSVGEQQRVEILKALYRGARLLILDEPTAV 170
Query: 914 L-DAESECVLQEALERLMR-GRTTVLVAHRLSTIRGV-DCIGVVQDGRIV 960
L E++ + E L RL G+T + + H+L + + D + V++ G++V
Sbjct: 171 LTPQEADELF-EILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 4e-22
Identities = 74/232 (31%), Positives = 110/232 (47%), Gaps = 22/232 (9%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA- 156
I +NVT SY + V ++ P GK A++G SG GKSTV+ + R D
Sbjct: 14 ISLQNVTISYGTFEAV---KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS 70
Query: 157 --GHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYGKP----EATMAE- 207
G VL D D+ + +R +IG+V Q+P F +I ENI +G M E
Sbjct: 71 LKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL 130
Query: 208 VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 267
VE + A + + ++ E G LSGGQ+QR+ IAR + P+++L+DE S
Sbjct: 131 VERSLRKA-------AVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCS 183
Query: 268 ALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT 319
ALD S ++E + L T V+V H + V + + VE G+
Sbjct: 184 ALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGS 235
|
Length = 269 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 4e-22
Identities = 71/244 (29%), Positives = 119/244 (48%), Gaps = 30/244 (12%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+ F +VT + + + + AG+ VA++G SGSGKST++ ++ + G +
Sbjct: 1 VRFSDVTKRFG---ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI 57
Query: 160 LLDNVDIKTLQ-------------LRWLRDQIGLVNQEPALFA-TTILENILYGKPEATM 205
++ + + LR +R++IG+V Q LF T+L+N+ EA +
Sbjct: 58 QVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVT----EAPV 113
Query: 206 AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 265
+ A + A + L G + + QLSGGQ+QR+AIARA+ PK++L DE
Sbjct: 114 LVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEV 173
Query: 266 TSALDAGSESIVQEALDRLM-----VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGT 319
TSALD +V E L+ + T ++V H + R D V +G++VE G
Sbjct: 174 TSALDP---ELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230
Query: 320 HEEL 323
+E+
Sbjct: 231 PDEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 4e-22
Identities = 70/190 (36%), Positives = 101/190 (53%), Gaps = 22/190 (11%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 821
V D +L I +GQ AL+G SGSGK++++ +I T+G + G D+ RL+ + +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK- 75
Query: 822 KIGLVQQEPALFA-ASIFDNIAYG------KEGATEAEVVEAARAANVHGFV--SALPNA 872
+G V Q ALF ++FDNIA+G +E A + A+ + V + L +
Sbjct: 76 -VGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAI--KAKVTQLLEMVQLAHLADR 132
Query: 873 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR- 931
Y QLSGGQKQR+A+ARA+ P ILLLDE ALDA+ L+ L +L
Sbjct: 133 YPA-------QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE 185
Query: 932 -GRTTVLVAH 940
T+V V H
Sbjct: 186 LKFTSVFVTH 195
|
Length = 353 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.3 bits (239), Expect = 5e-22
Identities = 72/229 (31%), Positives = 112/229 (48%), Gaps = 10/229 (4%)
Query: 104 NVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF---YDPNA---G 157
N++ Y D I +D +I P ++G SGSGKST++ ++ R YD G
Sbjct: 12 NISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDG 71
Query: 158 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG-KPEATMAEVEAAASAA 215
VL DI + LR ++G+V Q+P F +I +NI Y K + E
Sbjct: 72 KVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVE 131
Query: 216 NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 275
+ L Y ++ QLSGGQ+QR+ IARA+ PK+LL+DE TS +D +
Sbjct: 132 ECLRKVGLWKEVYD-RLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQ 190
Query: 276 IVQEALDRLMVGRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEEL 323
+++ + L V+V+H + R D VA + G++VE G+ E+
Sbjct: 191 AIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239
|
Length = 257 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 6e-22
Identities = 70/218 (32%), Positives = 107/218 (49%), Gaps = 29/218 (13%)
Query: 766 FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 825
F+L + G+ A++G SG+GKS+++ LI F P +G + ++G+D R + +
Sbjct: 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTT--PPSRRPVSM 75
Query: 826 VQQEPALFA-ASIFDNIAYGKE------GATEAEVVEAARAANVHGFVSALPNAYKTPVG 878
+ QE LF+ ++ NI G A ++ AR + ++ LP
Sbjct: 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG------- 128
Query: 879 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL-----MRGR 933
QLSGGQ+QR+A+AR +++ ILLLDE SALD + QE L + R
Sbjct: 129 ----QLSGGQRQRVALARCLVREQPILLLDEPFSALDP---ALRQEMLTLVSQVCQERQL 181
Query: 934 TTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVS 970
T ++V+H L R VV DGRI G EL+S
Sbjct: 182 TLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219
|
Length = 232 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.3 bits (239), Expect = 7e-22
Identities = 68/244 (27%), Positives = 116/244 (47%), Gaps = 25/244 (10%)
Query: 96 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 155
+N +E +N+ F Y DV S G+ V+++G +GSGKST LI+ ++
Sbjct: 1 MNKILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF 60
Query: 156 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEP--ALFATTILENILYGKP------EATMAE 207
G V +D + + LR +IG+V Q P T+ +++ +G E +
Sbjct: 61 EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR 120
Query: 208 VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 267
V+ A A N F T P +LSGGQKQR+A+A + P+I++LDE+TS
Sbjct: 121 VDEALLAVNMLDFKTREP-----------ARLSGGQKQRVAVAGIIALRPEIIILDESTS 169
Query: 268 ALDAGSES----IVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323
LD ++ E ++ + T + + H L + D + V++ G++++ EL
Sbjct: 170 MLDPTGRQEIMRVIHEIKEKYQL--TVLSITHDLDEAASSDRILVMKAGEIIKEAAPSEL 227
Query: 324 IAKA 327
A +
Sbjct: 228 FATS 231
|
Length = 277 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 8e-22
Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 11/230 (4%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+E+ + +Y S+ V +D + G+ L+G +G+GK++++ +I P +GKV
Sbjct: 2 LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVH 863
IDG D R +R KIG++ E L+A + +N+ Y + AR A +
Sbjct: 60 TIDGVDTVRDPSF-VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118
Query: 864 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 923
+ L VGE S G KQ++AIARA++ +P+IL+LDE TS LD +
Sbjct: 119 KRLQ-LLEYLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173
Query: 924 EALERLMR-GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSR 971
+ +++L GR + +H + + + D + V+ G +V +GS L +R
Sbjct: 174 DFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223
|
Length = 245 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 9e-22
Identities = 73/249 (29%), Positives = 114/249 (45%), Gaps = 40/249 (16%)
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKS----SVIALIERFYDPTA---GKVMIDGKDI 811
V K + I AG++ ALVG SGSGKS S++ L+ A G ++ DG+D+
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLP--SPAAAHPSGSILFDGEDL 79
Query: 812 RRLNLKSLRL----KIGLVQQEP--AL-----FAASIFDNIAY---GKEGATEAEVVEAA 857
+ + LR KIG++ QEP +L + + + A A +E
Sbjct: 80 LAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELL 139
Query: 858 RAANV---HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 914
+ + A P+ +LSGGQ+QR+ IA A+ P +L+ DE T+AL
Sbjct: 140 ELVGIPEPEKRLDAYPH-----------ELSGGQRQRVMIAMALANEPDLLIADEPTTAL 188
Query: 915 DAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSR 971
D + + + L+ L G + + H L +R D + V+Q G IVE G+ L +
Sbjct: 189 DVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAA 248
Query: 972 PDGAYSRLL 980
P Y+R L
Sbjct: 249 PQHPYTRKL 257
|
Length = 534 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.4 bits (237), Expect = 9e-22
Identities = 66/207 (31%), Positives = 99/207 (47%), Gaps = 22/207 (10%)
Query: 125 FPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA---GHVLLDNVDIKTLQLR--WLRDQ 177
F + A++G SG GKST + + R D P G+V L +I LR Q
Sbjct: 28 FNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQ 87
Query: 178 IGLVNQEPALFATTILENILYG------KPEATMAE-VEAAASAANAHSFITLLPNGYST 230
+G+V Q+P F +I EN++YG K +A + E VE + A +
Sbjct: 88 VGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KD 140
Query: 231 QVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTT 290
+ E + LSGGQ+QR+ IAR + P ++LLDE TSALD S + ++ L L T
Sbjct: 141 HLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTI 200
Query: 291 VVVAHRLSTIRNV-DTVAVIQQGQVVE 316
++V H + + D A G ++E
Sbjct: 201 ILVTHSMHQASRISDKTAFFLTGNLIE 227
|
Length = 252 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 1e-21
Identities = 74/245 (30%), Positives = 118/245 (48%), Gaps = 27/245 (11%)
Query: 96 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 155
+ +EFK+V+F+YP + D S P G A++G +GSGKST+ LI P+
Sbjct: 2 KDNIVEFKHVSFTYPDSKKPAL-NDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPD 60
Query: 156 AGHVLLDNVDIKTLQLR--W-LRDQIGLVNQEP--ALFATTILENILYG-----KPEATM 205
VD TL + W +R+++G+V Q P T+ +++ +G P M
Sbjct: 61 DNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEM 120
Query: 206 AE-VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE 264
+ V + +I P LSGGQKQR+AIA + PKI++LDE
Sbjct: 121 IKIVRDVLADVGMLDYIDSEPA-----------NLSGGQKQRVAIAGILAVEPKIIILDE 169
Query: 265 ATSALD-AGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHE 321
+TS LD AG E I++ + +L T + + H + D V V+ G+++ G+
Sbjct: 170 STSMLDPAGKEQILK-LIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPV 228
Query: 322 ELIAK 326
E+ +K
Sbjct: 229 EIFSK 233
|
Length = 282 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 1e-21
Identities = 69/268 (25%), Positives = 129/268 (48%), Gaps = 32/268 (11%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
++ + + ++Y + + +I G+ A++GG+G+GKST+ + P++G +
Sbjct: 6 LKVEELNYNYSDGTHAL--KGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 160 LLDN--VDIKTLQLRWLRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEAAASAA 215
L D +D L LR+ +G+V Q+P LF+ ++ +++ +G + E E
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 216 NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 275
NA L G + LS GQK+R+AIA ++ PK+L+LDE T+ LD S
Sbjct: 124 NA-----LKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178
Query: 276 IVQEALDRLM--VGRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIAKAGAYAS 332
+ + L + +G T ++ H + + D V V+++G+V+ G +E+ A+
Sbjct: 179 EIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE------ 232
Query: 333 LIRFQEMVRNRDFANPSTRRSRSTRLSH 360
+EM+R + R R+ H
Sbjct: 233 ----KEMLRKVNL--------RLPRIGH 248
|
Length = 283 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 1e-21
Identities = 72/238 (30%), Positives = 119/238 (50%), Gaps = 18/238 (7%)
Query: 100 IEFKNVTFSY-PSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 157
I+F+NV + Y P P + + S G VA+VG +GSGKST++ P++G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 158 HVLLDNVDIKTLQ-----LRWLRDQIGLVNQ--EPALFATTILENILYGKPEATMAEVEA 210
+ + I T + L+ LR ++ LV Q E LF T+L+++ +G +E EA
Sbjct: 63 TITIAGYHI-TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEA 121
Query: 211 AASAANAHSFITLLPNGYSTQVGERG-VQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 269
A L G S + + +LSGGQ +R+AIA M P+IL LDE + L
Sbjct: 122 KEKALK-----WLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGL 176
Query: 270 DA-GSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325
D G + ++Q D G T ++V H + + D V V++ G++++ + +E+ +
Sbjct: 177 DPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234
|
Length = 287 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 2e-21
Identities = 75/231 (32%), Positives = 120/231 (51%), Gaps = 20/231 (8%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+ KN+T + S VI + +I G V ++G SG GK+TV+ L+ P G +
Sbjct: 7 VVLKNITKRFGSNT-VIDNLNLTI--KQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI 63
Query: 160 LLDNVDI--KTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAAN 216
+D D+ +++Q R I +V Q ALF ++ EN+ YG + + E
Sbjct: 64 FIDGEDVTHRSIQQR----DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKE 119
Query: 217 AHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 275
A + L G+ +R V Q+SGGQ+QR+A+ARA++ PK+LL DE S LDA
Sbjct: 120 ALELVDL--AGF----EDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRR 173
Query: 276 IVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
++E + L T++ V H S V DTV V+ +G++++ G+ +EL
Sbjct: 174 SMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.3 bits (234), Expect = 2e-21
Identities = 69/255 (27%), Positives = 127/255 (49%), Gaps = 30/255 (11%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----P 799
I++ ++ F Y ++ + + ++ I + A++G SG GKS+ + + R +
Sbjct: 8 IKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVR 64
Query: 800 TAGKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG------KEGATEA 851
G+V ++I RR+NL LR ++ +V +P LF S++DN+AYG +
Sbjct: 65 VEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEID 124
Query: 852 EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT 911
++VE+A + L + K + + + LSGGQ+QR+ IARA+ P +LL+DE
Sbjct: 125 DIVESALKD------ADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPC 178
Query: 912 SALDAESECVLQEALE--RLMRGRTTVLVAHRLSTI-RGVDCIGVVQD-----GRIVEQG 963
LD + ++ ++ RL T V+V+H L + R D + G++VE G
Sbjct: 179 FGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFG 238
Query: 964 SHSELVSRPDGAYSR 978
++ + P + +R
Sbjct: 239 LTKKIFNSPHDSRTR 253
|
Length = 261 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 3e-21
Identities = 70/247 (28%), Positives = 116/247 (46%), Gaps = 33/247 (13%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA- 156
+ KN+ Y + + D +I P + A++G SG GKST++ R D P
Sbjct: 7 LSTKNLNLWYGEKHALY---DITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR 63
Query: 157 --GHVLLDNVDIKTLQLR--WLRDQIGLVNQEPALFATTILENILYG------KPEATMA 206
G +L + +I LR +IG+V Q P F +I EN+ YG K + T+
Sbjct: 64 ITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLD 123
Query: 207 E-VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 265
VE + A L + ++ + + LSGGQ+QR+ IAR + NP+++L+DE
Sbjct: 124 TIVEKSLKGA-------ALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEP 176
Query: 266 TSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGT----- 319
SALD + + +++ ++ L T ++V H + V D + G+++E
Sbjct: 177 CSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236
Query: 320 ---HEEL 323
HEEL
Sbjct: 237 ENPHEEL 243
|
Length = 253 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 3e-21
Identities = 74/256 (28%), Positives = 123/256 (48%), Gaps = 27/256 (10%)
Query: 745 IELRHVDFAY-PSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
I+ +VD+ Y P P + + + + G ALVG +GSGKS+++ P++G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 803 KVMIDGKDIR----RLNLKSLRLKIGLVQQ--EPALFAASIFDNIAYGKE--GATEAEVV 854
+ I G I NLK LR K+ LV Q E LF ++ ++ +G + G +E E
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122
Query: 855 EAA-RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 913
E A + G L + K+P +LSGGQ +R+AIA + P IL LDE +
Sbjct: 123 EKALKWLKKVGLSEDLIS--KSPF-----ELSGGQMRRVAIAGVMAYEPEILCLDEPAAG 175
Query: 914 LDAESECVLQEALERLMR-GRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSR 971
LD E + + + + G T +LV H + + D + V++ G++++ S E+ S
Sbjct: 176 LDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSD 235
Query: 972 PDGAYSRLLQLQHHHI 987
+ L+ H++
Sbjct: 236 KE-------WLKKHYL 244
|
Length = 287 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 3e-21
Identities = 58/211 (27%), Positives = 103/211 (48%), Gaps = 20/211 (9%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 821
+ +L + L+G +G+GKS+++ +I PT+G+++ DG R +L
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLH---- 70
Query: 822 KIGLVQQEPALFA-ASIFDN--IAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVG 878
KIG + + P L+ + +N + G ++ + E + L N K
Sbjct: 71 KIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVD-------LTNTGKKKAK 123
Query: 879 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL-MRGRTTVL 937
Q S G KQR+ IA A+L +P +L+LDE T+ LD L+E + +G T +L
Sbjct: 124 ----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVIL 179
Query: 938 VAHRLSTIRGV-DCIGVVQDGRIVEQGSHSE 967
+H LS ++ + D IG++ +G + QG ++
Sbjct: 180 SSHILSEVQQLADHIGIISEGVLGYQGKINK 210
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 4e-21
Identities = 69/247 (27%), Positives = 123/247 (49%), Gaps = 41/247 (16%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E + +T +P V+ D S+ G+ A++G +G+GKST++ ++ Y P++G +
Sbjct: 5 LEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 160 LLD--NVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAAN 216
+D V IK+ + +R IG+V+Q L T T+ ENI+ G + ++ + A
Sbjct: 62 RVDGKEVRIKSPR-DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR 120
Query: 217 AHSF-----ITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271
+ + P+ V + LS G++QR+ I +A+ + ++L+LDE T+ L
Sbjct: 121 IKELSERYGLPVDPDAK---VAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTP 173
Query: 272 GSESIVQEALDRLMV--------GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG---- 318
QEA D L G+T + + H+L + + D V V+++G+VV T
Sbjct: 174 ------QEA-DELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVA 226
Query: 319 --THEEL 323
T EEL
Sbjct: 227 ETTEEEL 233
|
Length = 501 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 4e-21
Identities = 79/235 (33%), Positives = 121/235 (51%), Gaps = 22/235 (9%)
Query: 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
+IE N+ S+ + D S+ P+G+ VA++G SGSGK+T++ +I +GH
Sbjct: 2 SIEIANIKKSFGRTQ---VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGH 58
Query: 159 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANA 217
+ D+ L R ++G V Q ALF T+ +NI +G T+ +AA
Sbjct: 59 IRFHGTDVSRLHAR--DRKVGFVFQHYALFRHMTVFDNIAFG---LTVLPRRERPNAAAI 113
Query: 218 HSFIT-LLPNGYSTQVGER-GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 275
+ +T LL + +R QLSGGQKQR+A+ARA+ P+ILLLDE ALDA
Sbjct: 114 KAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ--- 170
Query: 276 IVQEALDRLM------VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
V++ L R + + T+V V H V D V V+ QG + + GT +++
Sbjct: 171 -VRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 5e-21
Identities = 64/216 (29%), Positives = 94/216 (43%), Gaps = 32/216 (14%)
Query: 128 GKTVAVVGGSGSGKSTVVSLIERFYDPNA----GHVLLDNVDIKTLQLRWLRDQIGLVNQ 183
G+ +A+VG SGSGKS I P G +LLD + L +R I + Q
Sbjct: 12 GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR--HIATIMQ 69
Query: 184 EP-----ALF--ATTILENI-----LYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQ 231
P LF +E + L + A + E A + + P
Sbjct: 70 NPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYP------ 123
Query: 232 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTT- 290
QLSGG QR+ IA A+L P L+ DE T+ LD +++ V + L L T
Sbjct: 124 -----FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTG 178
Query: 291 -VVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEELI 324
+++ H L + R D VAV+ G++VE GT +E+
Sbjct: 179 ILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIF 214
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.4 bits (232), Expect = 5e-21
Identities = 75/234 (32%), Positives = 111/234 (47%), Gaps = 33/234 (14%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL------- 814
V N + AG+ AL+G SGSGKS+++ ++ G++ ++G+ + +
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 815 ------NLKSLRLKIGLVQQEPALFA-ASIFDNIAYGK---EGATEAEVVEAARAANVHG 864
+L+ +R KIG+V Q LF ++ DN+ G AE RA +
Sbjct: 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEA--EKRAMELLD 132
Query: 865 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 924
V A P QLSGGQ+QR+AIARA+ P ++L DE TSALD E ++ E
Sbjct: 133 MVGLADKADHMPA-----QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE---LVGE 184
Query: 925 ALERLMR-----GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 972
L + R T +LV H + R D + GRIVEQG E+ +P
Sbjct: 185 VLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQP 238
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 5e-21
Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 30/206 (14%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+++ H+ Y +P +D NL + +G+ ++G SG GK++++ LI F G +
Sbjct: 2 LQISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE--GATEAEVVEAARAA- 860
+DGK + + + G+V Q L ++ DN+A+G + G + + +E A
Sbjct: 59 TLDGKPV-----EGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQML 113
Query: 861 ---NVHGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 916
+ G +R + QLSGGQ+QR+ IARA+ NP +LLLDE ALDA
Sbjct: 114 KKVGLEGA------------EKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
Query: 917 ESECVLQEALERLMR--GRTTVLVAH 940
+ +Q L +L + G+ +L+ H
Sbjct: 162 FTREQMQTLLLKLWQETGKQVLLITH 187
|
Length = 255 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.1 bits (231), Expect = 6e-21
Identities = 70/240 (29%), Positives = 112/240 (46%), Gaps = 26/240 (10%)
Query: 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA 156
I+ +N+ Y + ++ S+ P A++G SG GKST + + R D N
Sbjct: 12 QIKVENLNLWYGEKQ---ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC 68
Query: 157 ---GHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYG-------KPEAT 204
G V ++ DI + + LR +G+V Q+P F +I +N+ YG K +
Sbjct: 69 RIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLD 128
Query: 205 MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE 264
A SAA L + S ++ + LSGGQ+QR+ IAR + PKI+L DE
Sbjct: 129 GVVENALRSAA--------LWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDE 180
Query: 265 ATSALDAGSESIVQEALDRLMVGRTTVVVAHRL-STIRNVDTVAVIQQGQVVETGTHEEL 323
TSALD S + +++ + L T V+V H + R D G+++E G ++
Sbjct: 181 PTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI 240
|
Length = 258 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 6e-21
Identities = 65/214 (30%), Positives = 106/214 (49%), Gaps = 13/214 (6%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
++ +NV + I + S AG+ + G SG GKST++ ++ P +G +
Sbjct: 8 LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP-EATMAEVEAAASAANAH 218
L + DI TL+ R Q+ Q P LF T+ +N+++ P + + + A +
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIF--PWQIRNQQPDPAIFLDDLE 122
Query: 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 278
F LP+ T + + +LSGG+KQRI++ R + PK+LLLDE TSALD ++ V
Sbjct: 123 RF--ALPD---TILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVN 177
Query: 279 EALDRLMVGRTTVV--VAHRLSTIRNVDTVAVIQ 310
E + R + + V V H I + D V +Q
Sbjct: 178 EIIHRYVREQNIAVLWVTHDKDEINHADKVITLQ 211
|
Length = 225 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 90.2 bits (225), Expect = 7e-21
Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 67/224 (29%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E + +T + V S+ G+ A++G +G+GKST++ ++ Y P++G +
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHS 219
LV+ + FA+ A
Sbjct: 58 --------------------LVDGKEVSFAS---------------------PRDARRA- 75
Query: 220 FITLLPNGYSTQVGERGV----QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 275
G+ QLS G++Q + IARA+ +N ++L+LDE T+AL
Sbjct: 76 ----------------GIAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVE 119
Query: 276 IVQEALDRLMV-GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVET 317
+ + + RL G + ++HRL + + D V V++ G+VV T
Sbjct: 120 RLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 7e-21
Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 27/227 (11%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
++ + Y + V D +L ++ G+ +G +G+GK++ + +I P +G++
Sbjct: 1 LKTNDLTKTYGKKR---VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI 57
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNI-----AYGKEGATEAEVVEAAR 858
DGK +IG + + P + + +N+ G EV++
Sbjct: 58 TFDGKSY--QKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLD--- 112
Query: 859 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 918
V L ++ K V S G KQR+ IA A+L NP +L+LDE T+ LD +
Sbjct: 113 -------VVGLKDSAKKKVK----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDG 161
Query: 919 ECVLQEALERLMRGRTTVLVA-HRLSTIRGV-DCIGVVQDGRIVEQG 963
L+E + L TVL++ H LS I+ V D IG++ G+++E+G
Sbjct: 162 IKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 8e-21
Identities = 65/202 (32%), Positives = 103/202 (50%), Gaps = 20/202 (9%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 821
V +L I AGQ A+VG SG GKS+++ L+ P+AG+++ L R
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG-----TAPLAEARE 81
Query: 822 KIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGER 880
L+ Q+ L + DN+ G +G ++A A + + P A
Sbjct: 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAA-------- 133
Query: 881 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLV 938
LSGGQKQR+A+ARA++ P +LLLDE ALDA + +Q+ +E L + G T +LV
Sbjct: 134 ---LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLV 190
Query: 939 AHRLS-TIRGVDCIGVVQDGRI 959
H +S + D + ++++G+I
Sbjct: 191 THDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 1e-20
Identities = 73/250 (29%), Positives = 113/250 (45%), Gaps = 38/250 (15%)
Query: 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA---GHVLLDNVDI--KTLQLR 172
D ++ A +G SG GKSTV+ + R ++ P A G VLLD D+ +
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 173 WLRDQIGLVNQEPALFAT-TILENILYG--------KPEATMAEVEAAASAANAHSFITL 223
+R IG+V Q P F T +I +N++ G K + VE + AN
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLD-ELVEKSLRGAN------- 133
Query: 224 LPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDR 283
L N ++ + G LSGGQ+QR+ IARA+ P +LL+DE SALD S +++ ++
Sbjct: 134 LWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINE 193
Query: 284 LMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNR 343
L T V+V H + QQ V T + G L+ + +
Sbjct: 194 LKQDYTIVIVTHNM------------QQAARVSDQTAFFNLEATGKPGRLVEIDDT--EK 239
Query: 344 DFANPSTRRS 353
F+NP+ + +
Sbjct: 240 IFSNPTQKAT 249
|
Length = 258 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 1e-20
Identities = 72/244 (29%), Positives = 109/244 (44%), Gaps = 58/244 (23%)
Query: 769 RIRAGQSQALVGASGSGKSSV---IALIERFYDPTAGKVMIDGKDIR---RLNLKSLRLK 822
+ G++ A+VG SG GKS++ + +IE PT G++ G+D+ K LR K
Sbjct: 37 TLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDLLKADPEAQKLLRQK 93
Query: 823 IGLVQQEPALFAASIFDNIAYG------KEGATEAEVVE-------AARAANVHGFVSAL 869
I +V Q P YG K G E + A R
Sbjct: 94 IQIVFQNP------------YGSLNPRKKVGQILEEPLLINTSLSAAERREKAL------ 135
Query: 870 PNAYKTPVGERGVQ-------LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 922
A VG R SGGQ+QRIAIARA++ +P +++ DE SALD V
Sbjct: 136 --AMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS---VQ 190
Query: 923 QEALERLMR-----GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAY 976
+ L +M G + V ++H LS + + D + V+ GR VE+G+ ++ + P Y
Sbjct: 191 AQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPY 250
Query: 977 SRLL 980
++ L
Sbjct: 251 TQAL 254
|
Length = 327 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 1e-20
Identities = 63/217 (29%), Positives = 105/217 (48%), Gaps = 19/217 (8%)
Query: 765 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI----RRLNLKSLR 820
D N + A AL G SGSGK+S+I +I P G++ ++G+ + + + L +
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK 75
Query: 821 LKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGE 879
+IG V Q+ LF ++ N+ YG + A+ + + + P
Sbjct: 76 RRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG-------- 127
Query: 880 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTT--VL 937
LSGG+KQR+AI RA+L P +LL+DE ++LD + + LERL +
Sbjct: 128 ---TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILY 184
Query: 938 VAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPD 973
V+H L + R D + V+++G++ G E+ PD
Sbjct: 185 VSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPD 221
|
Length = 352 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.4 bits (229), Expect = 1e-20
Identities = 69/273 (25%), Positives = 123/273 (45%), Gaps = 17/273 (6%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
I +NV++SYP + + ++ G+ + ++G +GSGKST+ + P G V
Sbjct: 2 IRLENVSYSYPDGTPAL--ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 160 LLDNVDIKTL-QLRWLRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEAAASAAN 216
L+ +D +L+ +R +G+V Q P T+ E++ +G + +E
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDR 119
Query: 217 AHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 276
A + I L + + LSGGQ Q +A+A + P+ L+ DE TS LD S
Sbjct: 120 ALAEIGLEKYRHRSPK-----TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIA 174
Query: 277 VQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAG------A 329
V E + +L G+T V + H L + + D + V+ +G++V G E +++
Sbjct: 175 VLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLT 234
Query: 330 YASLIRFQEMVRNRDFANPSTRRSRSTRLSHSL 362
SLI E ++ P S + + +
Sbjct: 235 PPSLIELAENLKMHGVVIPWENTSSPSSFAEEI 267
|
Length = 274 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 2e-20
Identities = 74/242 (30%), Positives = 114/242 (47%), Gaps = 38/242 (15%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI----RRLNLKSL 819
D N G+ A+VG +GSGKS++I I PT G V +D I + ++ +
Sbjct: 24 HDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPV 83
Query: 820 RLKIGLVQQ--EPALFAASIFDNIAYG-KEGATEAEVVE--AARAANVHGFVSALPNAYK 874
R +IG+V Q E LF ++ I +G K + V+ A R GF
Sbjct: 84 RKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGF--------- 134
Query: 875 TPVGERGV------QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALER 928
R V Q+SGGQ ++IAI + NP I++LDE T+ LD +S+ + L+
Sbjct: 135 ----SRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS 190
Query: 929 LM--RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHH 985
L +T +LV+H ++ + R D + V+++G IV Q S EL + +L
Sbjct: 191 LQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL-------FKDKKKLADW 243
Query: 986 HI 987
HI
Sbjct: 244 HI 245
|
Length = 286 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 2e-20
Identities = 73/257 (28%), Positives = 125/257 (48%), Gaps = 6/257 (2%)
Query: 728 IDPDDP-DAEPVETIRGEIELRHVDFAYPSRPDV-VVFKDFNLRIRAGQSQALVGASGSG 785
I+P P A P G + V Y R + +V + + RI + +VG +GSG
Sbjct: 1291 IEPASPTSAAPHPVQAGSLVFEGVQMRY--REGLPLVLRGVSFRIAPREKVGIVGRTGSG 1348
Query: 786 KSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK 845
KS+++ R + G++ ++G++I L+ LR + ++ Q+P LF ++ N+
Sbjct: 1349 KSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL 1408
Query: 846 EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK-NPAI 904
E A+ AEV A + V++ + V E G S GQ+Q + +ARA+LK
Sbjct: 1409 E-ASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGF 1467
Query: 905 LLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGS 964
+L+DEAT+ +D + +Q + T + +AHRL T+ D I V+ G + E GS
Sbjct: 1468 ILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGS 1527
Query: 965 HSELVSRPDGAYSRLLQ 981
ELV + +++
Sbjct: 1528 PRELVMNRQSIFHSMVE 1544
|
Length = 1560 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 2e-20
Identities = 70/215 (32%), Positives = 112/215 (52%), Gaps = 24/215 (11%)
Query: 129 KTVAVVGGSGSGKSTVVSLIERFYD--PN---AGHVLL--DNVDIKTLQLR--WLRDQIG 179
+ A++G SG GKST + R +D P G ++L DNV+I + ++ +R +I
Sbjct: 43 QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRIS 102
Query: 180 LVNQEPALFATTILENILYG------KPEATMAE-VEAAASAANAHSFITLLPNGYSTQV 232
+V Q+P F +I EN+ YG K + + E VE A A L + ++
Sbjct: 103 MVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNA-------ALWDEVKDRL 155
Query: 233 GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVV 292
G+ LSGGQ+QR+ IARA+ +P+ILL DE TSALD + + ++E + L T ++
Sbjct: 156 GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILI 215
Query: 293 VAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 326
V H + V D A + G+++E G + + K
Sbjct: 216 VTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIK 250
|
Length = 265 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 2e-20
Identities = 67/221 (30%), Positives = 106/221 (47%), Gaps = 33/221 (14%)
Query: 103 KNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD 162
V+ Y R + + PAG+ VAVVG SG GKST++ L+ P+AG +L
Sbjct: 16 NAVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG 72
Query: 163 NVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG-----KPEATMAEVEAAASAAN 216
L R+ L+ Q+ L +++N+ G + A A + A
Sbjct: 73 TA-----PLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQA-LAAV----- 121
Query: 217 AHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 276
G + + E LSGGQKQR+A+ARA++ P +LLLDE ALDA +
Sbjct: 122 ----------GLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIE 171
Query: 277 VQEALDRLMV--GRTTVVVAHRLS-TIRNVDTVAVIQQGQV 314
+Q+ ++ L G T ++V H +S + D V +I++G++
Sbjct: 172 MQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 2e-20
Identities = 74/202 (36%), Positives = 104/202 (51%), Gaps = 17/202 (8%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
I HV AY + F++R G+ L G SG+GKS+++ LI P+AGK+
Sbjct: 2 IRFEHVSKAYLGGRQALQGVTFHMR--PGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI 59
Query: 805 MIDGKDIRRLNLKS---LRLKIGLV-QQEPALFAASIFDNIAYGK--EGATEAEVVEAAR 858
G DI RL + LR +IG++ Q L +++DN+A GA+ ++
Sbjct: 60 WFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVS 119
Query: 859 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD-AE 917
AA V L A P+ QLSGG++QR+ IARAV+ PA+LL DE T LD A
Sbjct: 120 AA--LDKVGLLDKAKNFPI-----QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL 172
Query: 918 SECVLQEALERLMRGRTTVLVA 939
SE +L+ E R TVL+A
Sbjct: 173 SEGILR-LFEEFNRVGVTVLMA 193
|
Length = 222 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 2e-20
Identities = 67/225 (29%), Positives = 105/225 (46%), Gaps = 26/225 (11%)
Query: 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI------------- 166
+ S F K ++G SGSGKST+V+ G + + ++ I
Sbjct: 44 NISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNP 103
Query: 167 ---KTLQLRWLRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEAAASAANAHSFI 221
K + LR ++ +V Q P LF TI ++I++G + + EA A
Sbjct: 104 YSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAK-----F 158
Query: 222 TLLPNGYSTQVGERG-VQLSGGQKQRIAIARAMLKNPKILLLDEATSALD-AGSESIVQE 279
L G ER LSGGQK+R+AIA + P+IL+ DE T+ LD G ++Q
Sbjct: 159 YLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQL 218
Query: 280 ALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
LD +T V+ H + + V D V V+ +G++++TGT E+
Sbjct: 219 ILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEI 263
|
Length = 320 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 2e-20
Identities = 69/221 (31%), Positives = 105/221 (47%), Gaps = 30/221 (13%)
Query: 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL-R 175
I R S+ P G+ V+G +G GK+T++ + +G + LD DI L R
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 176 DQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFI-----TLLPNGYS 229
I V Q +F T+ EN+L G A+ I L P
Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTG-----------LAALPRRSRKIPDEIYELFP--VL 121
Query: 230 TQV-GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE---ALDRL- 284
++ G RG LSGGQ+Q++AIARA++ PK+LLLDE T + SI+++ + RL
Sbjct: 122 KEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQP---SIIKDIGRVIRRLR 178
Query: 285 -MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
G ++V L R + D V+++G+VV +G +EL
Sbjct: 179 AEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 2e-20
Identities = 67/286 (23%), Positives = 120/286 (41%), Gaps = 53/286 (18%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
I +N++ +Y RP + + S+ G+ + +VG +G+GKST++ ++ +P++G V
Sbjct: 4 ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAH 218
++G ++QEP L T+L+ ++ G E E + A
Sbjct: 61 TRPKGL-----------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 219 SFITLLPNGYSTQVGERGV------------------------QLSGGQKQRIAIARAML 254
L + E LSGG ++R+A+ARA+L
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169
Query: 255 KNPKILLLDEATSALDAGSESIVQEALDRLMVGR--TTVVVAHRLSTIRNVDTVAVIQQG 312
+ P +LLLDE T+ LD ESI E L+ + T +VV+H + NV T
Sbjct: 170 EEPDLLLLDEPTNHLDL--ESI--EWLEDYLKRYPGTVIVVSHDRYFLDNVAT------- 218
Query: 313 QVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRL 358
++E +L G Y+S + + ++ A ++ +
Sbjct: 219 HILEL-DRGKLTPYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKE 263
|
Length = 530 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (228), Expect = 2e-20
Identities = 65/206 (31%), Positives = 103/206 (50%), Gaps = 7/206 (3%)
Query: 777 ALVGASGSGKSSVIALIERFYDPTAG-----KVMIDGKDI-RRLNLKSLRLKIGLVQQEP 830
+L+G +GSGK++ + + R D +G V++ G+ I ++ R ++G++ Q P
Sbjct: 51 SLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRP 110
Query: 831 ALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890
F SI DN+ G E A L +A K + + +LSGGQ+Q
Sbjct: 111 NPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQ 170
Query: 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLS-TIRGVD 949
+ +AR + NP +LLLDE TSALD + ++E + L T ++V H L+ R D
Sbjct: 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISD 230
Query: 950 CIGVVQDGRIVEQGSHSELVSRPDGA 975
+ DGR+VE+G +L S P A
Sbjct: 231 RAALFFDGRLVEEGPTEQLFSSPKHA 256
|
Length = 276 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 93.1 bits (231), Expect = 3e-20
Identities = 63/233 (27%), Positives = 108/233 (46%), Gaps = 17/233 (7%)
Query: 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA- 156
G I ++ +Y + + D S+ AG+ +A++G SG GK+T++ I F
Sbjct: 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60
Query: 157 -GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASA 214
G + + + D+ + + L+ Q ALF + +N+ +G M + + A
Sbjct: 61 TGRIAIADRDLTHAPPH--KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERV 118
Query: 215 ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274
A+A + G QLSGG +QRIAIARA+ P +LLLDE SALDA
Sbjct: 119 ADALKLV-----GLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIR 173
Query: 275 SIVQEALDRL---MVGRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTHEEL 323
+ ++E + L + T + V H + + D +++ G++ G + L
Sbjct: 174 ANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 3e-20
Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 34/222 (15%)
Query: 118 FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLI--------------ERFYDPNAGHVLLDN 163
++ ++ P + A++G SG GKST + + E Y N ++L
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNY--NGSNILKGK 85
Query: 164 VDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG------KPEATMAEVEAAASAANA 217
VD+ L R IG+V Q+ F +I +N+ YG K + + E+ + A
Sbjct: 86 VDLVEL-----RKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVA 140
Query: 218 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 277
L + ++ + + LSGGQ+QR+ IARA+ NP +LL+DE TSALD S +
Sbjct: 141 ------LWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKI 194
Query: 278 QEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 318
+E + +L T V+V H + V D A G++VE
Sbjct: 195 EELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECN 236
|
Length = 259 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.5 bits (229), Expect = 3e-20
Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 9/226 (3%)
Query: 101 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG--- 157
E +N F Y +R ++ D ++ K A +G SG GKST + + + D G
Sbjct: 82 EIRNFNFWYMNRTKHVL-HDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 158 ----HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAAS 213
+ L N K + LR +IG+V Q+P F +I +N+ YG + + +
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200
Query: 214 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 273
L + + + G LSGGQ+QR+ IARA+ P++LL+DE TSALD +
Sbjct: 201 IVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIA 260
Query: 274 ESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 318
+ ++E + L + ++V H ++ + + D QG + E G
Sbjct: 261 TAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306
|
Length = 329 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.2 bits (226), Expect = 3e-20
Identities = 66/208 (31%), Positives = 107/208 (51%), Gaps = 9/208 (4%)
Query: 125 FPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA---GHVLLDNVDIKTLQLR--WLRDQ 177
G A++G SG GK+T + I R +D P A G +LLD DI ++ +R +
Sbjct: 27 VQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRR 86
Query: 178 IGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERG 236
+G+V Q+P F T ++ +N++ G A + + + A L + ++
Sbjct: 87 VGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPA 146
Query: 237 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHR 296
LSGGQ+QR+ IARA+ P+ILL+DE TSALD S + +++ + L T ++V H
Sbjct: 147 TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHN 206
Query: 297 L-STIRNVDTVAVIQQGQVVETGTHEEL 323
+ R DT + G +VE G ++L
Sbjct: 207 MHQAARVSDTTSFFLVGDLVEHGPTDQL 234
|
Length = 252 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.2 bits (226), Expect = 3e-20
Identities = 73/244 (29%), Positives = 114/244 (46%), Gaps = 30/244 (12%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
I+ K+++F Y + + S+ K A++G SG GKST + + R + G V
Sbjct: 8 IKVKDLSFYYNTSKAI---EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELE-GPV 63
Query: 160 LLD--------NVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG------KPEATM 205
++ N+ + + LR QIG+V Q P F +I EN+ YG P+A +
Sbjct: 64 KVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADL 123
Query: 206 AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 265
E+ +A A L ++ + + LSGGQ+QR+ IARA+ PK+LL+DE
Sbjct: 124 DEIVESALKGAA------LWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEP 177
Query: 266 TSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQ-----GQVVETGT 319
SALD + V+E + L T +V H + V D A GQ+VE G
Sbjct: 178 CSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGV 237
Query: 320 HEEL 323
++
Sbjct: 238 TTQI 241
|
Length = 259 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 3e-20
Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 25/238 (10%)
Query: 100 IEFKNVTFSYPSRPD---VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 156
I+ KNV++ Y S + + D ++ G+ + ++G +GSGKST+ + P+
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 157 GHVLLDNVDIKTLQLRW-LRDQIGLVNQEP--ALFATTILENILYG------KPEATMAE 207
G V +D +D + W +R++ G+V Q P + AT + E++ +G PE
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124
Query: 208 VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 267
V+ + + + P+ LSGGQKQR+AIA + P+ ++ DE T+
Sbjct: 125 VDESLKKVGMYEYRRHAPH-----------LLSGGQKQRVAIAGILAMRPECIIFDEPTA 173
Query: 268 ALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323
LD V + L G T +++ H + D + V+ G+VV GT +E+
Sbjct: 174 MLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231
|
Length = 280 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 3e-20
Identities = 78/259 (30%), Positives = 125/259 (48%), Gaps = 27/259 (10%)
Query: 100 IEFKNVTFSYPS-RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
+E K++ SYPS V + + S+ AG+ VA+VG SGSGKST+++++ P +G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 159 VLLDNVDIKTL------QLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAA 211
+ D+ TL QLR R+ G + Q L + T +N+ + A A +E
Sbjct: 65 YRVAGQDVATLDADALAQLR--REHFGFIFQRYHLLSHLTAAQNV---EVPAVYAGLERK 119
Query: 212 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271
A + L G +V + QLSGGQ+QR++IARA++ +++L DE T ALD+
Sbjct: 120 QRLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDS 177
Query: 272 GSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQVV----------ETGTH 320
S V L +L G T ++V H + V I+ G++V G
Sbjct: 178 HSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKVNVAGGT 237
Query: 321 EELIAKAGAYASLI-RFQE 338
E ++ A + + F+E
Sbjct: 238 EPVVNTASGWRQFVSGFRE 256
|
Length = 648 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 3e-20
Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 34/222 (15%)
Query: 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL-RWLRDQI 178
+ G+ VA++G +G+GK+T++ I P +G ++ D DI L R I
Sbjct: 23 SLEV--ERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80
Query: 179 GLVNQEPALFAT-TILENILYG--------KPEATMAEVEAAASAANAHSFITLLPNGYS 229
V + +F T+ EN+L G E + EV L P
Sbjct: 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEV------------YELFPR-LK 127
Query: 230 TQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALD-----RL 284
+ +R LSGG++Q +AIARA++ PK+LLLDE + L + IV+E + R
Sbjct: 128 ERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIKELRK 184
Query: 285 MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIA 325
G T ++V + D V++ G++V +GT EL+A
Sbjct: 185 EGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 4e-20
Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 9/231 (3%)
Query: 98 GNIEFKNVTFSYPSRPDV-IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 156
G++ F+ V Y R + ++ R S + V +VG +GSGKST++ R +
Sbjct: 1307 GSLVFEGVQMRY--REGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCG 1364
Query: 157 GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP--EATMAEVEAAASA 214
G + ++ +I LR LR Q ++ Q+P LF T+ +N+ P EA+ AEV AA
Sbjct: 1365 GEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNV---DPFLEASSAEVWAALEL 1421
Query: 215 ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK-NPKILLLDEATSALDAGS 273
+ G ++V E G S GQ+Q + +ARA+LK +L+DEAT+ +D
Sbjct: 1422 VGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPAL 1481
Query: 274 ESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELI 324
+ +Q + T + +AHRL T+ D + V+ G V E G+ EL+
Sbjct: 1482 DRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELV 1532
|
Length = 1560 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.3 bits (226), Expect = 4e-20
Identities = 66/229 (28%), Positives = 115/229 (50%), Gaps = 10/229 (4%)
Query: 104 NVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH----- 158
N+T + + + S+ FPA +++G +GSGK+T + + R D +G+
Sbjct: 26 NLTLGFAGK---TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGD 82
Query: 159 VLLDNVDIKTLQ-LRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANA 217
VLL I + + R ++G++ Q P F +I++N+L G + + A A
Sbjct: 83 VLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQA 142
Query: 218 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 277
L + ++ + +LSGGQ+Q + +AR + NP++LLLDE TSALD + +
Sbjct: 143 RLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKI 202
Query: 278 QEALDRLMVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELIA 325
+E + L T ++V H L+ R D A+ G++VE G E+L +
Sbjct: 203 EEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251
|
Length = 276 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (225), Expect = 4e-20
Identities = 70/228 (30%), Positives = 111/228 (48%), Gaps = 22/228 (9%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--PTA---GKVMIDGKDI--RRL 814
V K +L+I AL+G SG GKS+++ R + A G+V + G++I +
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78
Query: 815 NLKSLRLKIGLVQQEPALFA-ASIFDNIAYG-------KEGATEAEVVEAARAANVHGFV 866
+ +R ++G+V Q P F +I+DN+A G K E VE A
Sbjct: 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKK------ 132
Query: 867 SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEAL 926
+AL + K + + LSGGQ+QR+ IARA+ P ILL+DE T+ +D ++E L
Sbjct: 133 AALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELL 192
Query: 927 ERLMRGRTTVLVAHR-LSTIRGVDCIGVVQDGRIVEQGSHSELVSRPD 973
L + T VLV H R D + + G+++E G ++ P+
Sbjct: 193 FELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPE 240
|
Length = 253 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 4e-20
Identities = 74/238 (31%), Positives = 113/238 (47%), Gaps = 27/238 (11%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+ +N+T Y ++ I D S+ P GK A++G +G GKST++ R P +G V
Sbjct: 3 LRTENLTVGYGTKR---ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV 59
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQE-PALFATTILENILYGK-PEATM-----AEVEAAA 212
L + I L R L ++ L+ Q T+ E + YG+ P ++ AE A
Sbjct: 60 FLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARV 119
Query: 213 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272
+ A + I L + R LSGGQ+QR +A + ++ ++LLDE T+ LD
Sbjct: 120 NQAMEQTRINHLAD-------RRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDIN 172
Query: 273 SESIVQEALDRLM-----VGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 324
Q L RLM G+T V V H L+ R D + V+ G V+ GT EE++
Sbjct: 173 H----QVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 4e-20
Identities = 79/237 (33%), Positives = 120/237 (50%), Gaps = 28/237 (11%)
Query: 747 LRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 806
LR+V AY DVV+ KD NL I G+ VG SG GKS+++ +I D T+G + I
Sbjct: 6 LRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI 62
Query: 807 DGKDIRRLN-LKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE--GATEAE----VVEAAR 858
K R+N + +G+V Q AL+ S+ +N+++G + GA + E V + A
Sbjct: 63 GEK---RMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAE 119
Query: 859 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 918
+ + P A LSGGQ+QR+AI R ++ P++ LLDE S LDA
Sbjct: 120 VLQLAHLLDRKPKA-----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168
Query: 919 ECVLQEALERLMR--GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
++ + RL + GRT + V H ++ + D I V+ GR+ + G EL P
Sbjct: 169 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225
|
Length = 369 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.4 bits (224), Expect = 5e-20
Identities = 73/245 (29%), Positives = 119/245 (48%), Gaps = 37/245 (15%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--------- 812
V K +L+ AG +++G+SGSGKS+ + I P+ G ++++G+ I
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 813 ----RLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE---GATEAEVVE-AARAANVH 863
+ L+ LR ++ +V Q L++ ++ +N+ G ++ E E A +
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKV 139
Query: 864 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 923
G Y V LSGGQ+QR++IARA+ P +LL DE TSALD E ++
Sbjct: 140 GIDERAQGKYP-------VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE---LVG 189
Query: 924 EALERLMR-----GRTTVLVAHRLSTIRGVDC-IGVVQDGRIVEQGSHSELVSRPDGAYS 977
E L R+M+ G+T V+V H + R V + + G+I E+G+ +L P
Sbjct: 190 EVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSP-- 246
Query: 978 RLLQL 982
RL Q
Sbjct: 247 RLQQF 251
|
Length = 257 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.8 bits (225), Expect = 5e-20
Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 11/232 (4%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
I L +V ++YP ++ NL I+ G+ ++G +GSGKS++ + P GKV
Sbjct: 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 805 MIDGKDIRRLN-LKSLRLKIGLVQQEP--ALFAASIFDNIAYGKEGATEAEVVEAARAAN 861
++ G D + L+ +R +G+V Q P ++ +++A+G E + R
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDR 119
Query: 862 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 921
+ +++P LSGGQ Q +A+A + P L+ DE TS LD +S
Sbjct: 120 ALAEIGLEKYRHRSPK-----TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIA 174
Query: 922 LQEALERLMR-GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
+ E +++L G+T V + H L + D I V+ G+IV +G ++S
Sbjct: 175 VLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDV 226
|
Length = 274 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 5e-20
Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 34/217 (15%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKS 818
V D NL I G+ L G SGSGK++++ LI G + + G+++ + L
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 819 LRLKIGLVQQEPALF-----------AASIFDNIAYGKEGATEAEVVEAARAANVHGFVS 867
LR IG + Q L A + N++Y + ++EA + +
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDY-- 137
Query: 868 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 927
P+ LSGGQKQR+AIARA++ P ++L DE T+ALD++S + E ++
Sbjct: 138 -YPH-----------NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQ 185
Query: 928 RLMR--GRTTVLVAH--RLSTIRGVDCIGVVQDGRIV 960
+L R G T ++V H R+ + D I ++DG+++
Sbjct: 186 KLAREQGCTILIVTHDNRILDV--ADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 6e-20
Identities = 69/233 (29%), Positives = 109/233 (46%), Gaps = 35/233 (15%)
Query: 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA-----GHVLLDNVDI--KTLQL 171
+ S+ P A++G SG GKST + + R D G V LD DI + L
Sbjct: 62 KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121
Query: 172 RWLRDQIGLVNQEPALFATTILENILYG-------------------KPEATMAEVEAAA 212
LR ++G+V Q P F +I ENI YG +A VE +
Sbjct: 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSL 181
Query: 213 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272
A L + + ++ + + LSGGQ+QR+ IAR + +P+++L+DE SALD
Sbjct: 182 RQA-------ALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPI 234
Query: 273 SESIVQEALDRLMVGRTTVVVAHRL-STIRNVDTVAV-IQQGQVVETGTHEEL 323
+ S +++ ++ L T VVV H + R D AV + G++VE +++
Sbjct: 235 ATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKI 287
|
Length = 305 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.8 bits (224), Expect = 6e-20
Identities = 63/223 (28%), Positives = 109/223 (48%), Gaps = 22/223 (9%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL-KSLR 820
+ +L + G+ AL+G +G+GK++++ I P +G+++ DG+DI L + R
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77
Query: 821 LKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAY------ 873
L I V + +F ++ +N+ G A + L Y
Sbjct: 78 LGIAYVPEGRRIFPRLTVEENLLLG-----------AYARRDKEAQERDLEEVYELFPRL 126
Query: 874 KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-- 931
K +R LSGG++Q +AIARA++ P +LLLDE + L + + EA++ L +
Sbjct: 127 KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEG 186
Query: 932 GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPD 973
G T +LV + D V+++GRIV G+ +EL++ PD
Sbjct: 187 GMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229
|
Length = 237 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 6e-20
Identities = 62/249 (24%), Positives = 110/249 (44%), Gaps = 28/249 (11%)
Query: 730 PDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSV 789
E E + IEL++V + + D + ++ G+ A+VG +G+GK+++
Sbjct: 20 KKRHPIEINEPL---IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTL 73
Query: 790 IALIERFYDPTAGKVMIDGKDIRRLNLKS-LRLKIGLV---QQEPALFAASIFDNIAYGK 845
++L+ + P++G V + G+ + LR +IGLV E ++ D + G
Sbjct: 74 LSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGF 133
Query: 846 -------EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 898
+ AE + AA+ L + P G LS G+++R+ IARA+
Sbjct: 134 FASIGIYQEDLTAEDLAAAQWLLELLGAKHLADR---PFG----SLSQGEQRRVLIARAL 186
Query: 899 LKNPAILLLDEATSALDAESECVLQEALERLM---RGRTTVLVAHRLSTI-RGVDCIGVV 954
+K+P +L+LDE LD + L LE L + V H I ++
Sbjct: 187 VKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLL 246
Query: 955 QDGRIVEQG 963
++G +V QG
Sbjct: 247 KEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 7e-20
Identities = 60/210 (28%), Positives = 103/210 (49%), Gaps = 11/210 (5%)
Query: 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR 175
S+ G V V+G +G+GKST+++ I P +G +L+D VD+ T + R
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDV-TKKSVAKR 78
Query: 176 -DQIGLVNQEPAL---FATTILENILYGKPEATMAEVEAAASAANAHSF---ITLLPNGY 228
+ + V Q+P TI EN+ + + +A + SF + L G
Sbjct: 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGL 138
Query: 229 STQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR 288
++ +R LSGGQ+Q +++ A L PKILLLDE T+ALD + V E +++
Sbjct: 139 ENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEH 198
Query: 289 --TTVVVAHRL-STIRNVDTVAVIQQGQVV 315
TT++V H + + + + ++ G++V
Sbjct: 199 KLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 8e-20
Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 20/230 (8%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+ R + Y V V K + + AG+ AL+G +G+GKS+++ +I P +G +
Sbjct: 12 LCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68
Query: 805 MIDGKDIRRLN-LKSLRLKIGLVQQEPALFAA-SIFDNIAYG--KEGATEAEVVEAARAA 860
I G RL K+ +L I LV QEP LF S+ +NI +G K A+ ++ + A
Sbjct: 69 EIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAAL 128
Query: 861 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD-AESE 919
+ + +A V +R Q + I R ++++ IL+LDE T++L AE+E
Sbjct: 129 GCQLDLDS--SAGSLEVADR---------QIVEILRGLMRDSRILILDEPTASLTPAETE 177
Query: 920 CVLQEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSEL 968
+ E L +G V ++H+L IR + D I V++DG I G ++L
Sbjct: 178 RLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
Length = 510 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 8e-20
Identities = 73/249 (29%), Positives = 109/249 (43%), Gaps = 40/249 (16%)
Query: 758 PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP----TAGKVMIDGKDIRR 813
+ +L ++ G+ ALVG SGSGKS A TAG+V++DGK
Sbjct: 14 AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK---P 70
Query: 814 LNLKSLR-LKIGLVQQEPALFAASIFDNI------------AYGKEG--ATEAEVVEAAR 858
+ +LR KI + Q P S F+ + A GK AT +EA
Sbjct: 71 VAPCALRGRKIATIMQNPR----SAFNPLHTMHTHARETCLALGKPADDATLTAALEAVG 126
Query: 859 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 918
N + P ++SGG QR+ IA A+L ++ DE T+ LD +
Sbjct: 127 LENAARVLKLYP-----------FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVA 175
Query: 919 ECVLQEALERLMRGRT--TVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPDGA 975
+ + + LE +++ R +LV H + + R D + V+ GRIVEQG L + P A
Sbjct: 176 QARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHA 235
Query: 976 YSRLLQLQH 984
+R L H
Sbjct: 236 VTRSLVSAH 244
|
Length = 254 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 1e-19
Identities = 67/232 (28%), Positives = 118/232 (50%), Gaps = 13/232 (5%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E +++ +SYP + + +F G+ VA++G +G+GKST+ P +G V
Sbjct: 2 LETRDLKYSYPDGTEALKGINFKA--EKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 160 LLDNVDIK--TLQLRWLRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEAAASAA 215
L+ IK L +R +G+V Q P LFA T+ E++ +G +++ E
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVK 119
Query: 216 NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA-GSE 274
A + + G+ + LSGGQK+R+AIA + P+I++LDE TS LD G+
Sbjct: 120 EALKAVGM--EGFENKPPH---HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174
Query: 275 SIVQEALDRLMVGRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEELIA 325
I++ D G T ++ H + + D V V+ G++++ GT +E+ +
Sbjct: 175 QIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226
|
Length = 275 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.7 bits (222), Expect = 1e-19
Identities = 74/248 (29%), Positives = 124/248 (50%), Gaps = 36/248 (14%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA--- 156
I+ N++F Y ++ I S+ K A++G SG GKST + + R + +
Sbjct: 8 IKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVR 64
Query: 157 --GHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYG------KPEATMA 206
G V N +I + + L LR Q+ +V+ +P LF ++ +N+ YG +P+ +
Sbjct: 65 VEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEID 124
Query: 207 E-VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 265
+ VE+A A+ L + ++ + + LSGGQ+QR+ IARA+ PK+LL+DE
Sbjct: 125 DIVESALKDAD-------LWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEP 177
Query: 266 TSALDAGS----ESIVQEALDRLMVGRTTVVVAHRLSTI-RNVDTVAVIQQ-----GQVV 315
LD + ES++Q RL T V+V+H L + R D A + GQ+V
Sbjct: 178 CFGLDPIASMKVESLIQSL--RLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235
Query: 316 ETGTHEEL 323
E G +++
Sbjct: 236 EFGLTKKI 243
|
Length = 261 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 1e-19
Identities = 62/245 (25%), Positives = 112/245 (45%), Gaps = 37/245 (15%)
Query: 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
+ ++ Y ++ + D +L + G+ AL+G +G GKS+++ R P +G
Sbjct: 2 TLRTENLTVGYGTKR---ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGT 58
Query: 804 VMIDGKDIRRLNLKSLRLKIGLV-QQEPALFAASIFDNIAYGKE----------GATEAE 852
V + K I L+ + L ++ L+ Q ++ + +AYG+ A
Sbjct: 59 VFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNAR 118
Query: 853 VVEAARAANVHGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEAT 911
V +A ++ +R + LSGGQ+QR +A + ++ ++LLDE T
Sbjct: 119 VNQAMEQTRINHLA------------DRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPT 166
Query: 912 SALDAESECVLQEALERLMR-----GRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSH 965
+ LD Q L RLMR G+T V V H L+ R D + V+ +G ++ QG+
Sbjct: 167 TYLDINH----QVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTP 222
Query: 966 SELVS 970
E+++
Sbjct: 223 EEVMT 227
|
Length = 255 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 1e-19
Identities = 56/228 (24%), Positives = 92/228 (40%), Gaps = 36/228 (15%)
Query: 747 LRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 806
+ + KD + + G+ L+G +G+GKS+++ L+ Y P +G V +
Sbjct: 22 KLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTV 81
Query: 807 DGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE---------GATEAEVVEAA 857
G+ L F+ G+E G + E+
Sbjct: 82 RGRVS------------------SLLGLGGGFNPELTGRENIYLNGRLLGLSRKEI--DE 121
Query: 858 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 917
+ + F S L + PV S G K R+A A A P ILL+DE + DA
Sbjct: 122 KIDEIIEF-SELGDFIDLPVKT----YSSGMKARLAFAIATALEPDILLIDEVLAVGDAA 176
Query: 918 -SECVLQEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQG 963
E + E L +G+T +LV+H S+I+ + D V++ G+I G
Sbjct: 177 FQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (222), Expect = 2e-19
Identities = 63/232 (27%), Positives = 123/232 (53%), Gaps = 18/232 (7%)
Query: 100 IEFKNVTFSY-PSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 156
I+F+ V ++Y P+ P +F D + G A++G +GSGKST++ + P
Sbjct: 2 IKFEKVNYTYQPNSPFASRALF-DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60
Query: 157 GHVLLDNVDI----KTLQLRWLRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEA 210
G V + ++ + K +++ +R ++G+V Q P LF T+L+++ +G + + +A
Sbjct: 61 GKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKA 120
Query: 211 AASAANAHSFITLLPNGYSTQVGERG-VQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 269
AA + G + + E+ +LSGGQ +R+AIA + P++L+LDE T+ L
Sbjct: 121 EKIAAEKLEMV-----GLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGL 175
Query: 270 DAGSESIVQEALDRL-MVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGT 319
D + + + + + G+T V+V H + + + D V ++++G ++ GT
Sbjct: 176 DPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGT 227
|
Length = 288 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.5 bits (219), Expect = 3e-19
Identities = 73/267 (27%), Positives = 127/267 (47%), Gaps = 33/267 (12%)
Query: 73 LMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVA 132
+++++++K I P +E K+++ Y + V D S+ A
Sbjct: 1 VVQMVREKIEIAPFPE------AKEHILEVKDLSIYYGEKRAV---NDISMDIEKHAVTA 51
Query: 133 VVGGSGSGKSTVVSLIERFYD--PNA---GHVLLDNVDI--KTLQLRWLRDQIGLVNQEP 185
++G SG GKST + I R D P+A G +L + ++I + + LR +IG+V Q+P
Sbjct: 52 LIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKP 111
Query: 186 ALFATTILENILYG------KPEATMAEV--EAAASAANAHSFITLLPNGYSTQVGERGV 237
F +I NI + + ++ + E+ E+ AA L + ++ +
Sbjct: 112 NPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAA--------LWDEVKDRLHSSAL 163
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRL 297
LSGGQ+QR+ IAR + P +LLLDE SALD S + ++E + L + ++V H +
Sbjct: 164 SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNM 223
Query: 298 -STIRNVDTVAVIQQGQVVETGTHEEL 323
+R D A G +VE E++
Sbjct: 224 QQALRVSDRTAFFLNGDLVEYDQTEQI 250
|
Length = 268 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 3e-19
Identities = 67/239 (28%), Positives = 109/239 (45%), Gaps = 32/239 (13%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
I+L ++ Y + D L G++ L+G SG+GKSS++ ++ P +G +
Sbjct: 3 IQLNGINCFYGAHQ---ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 805 MIDGKDIRRLNLKS------LRLKIGLVQQEPALFA-ASIFDNI--------AYGKEGAT 849
I G S LR +G+V Q+ L+ ++ +N+ K+ A
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQA- 118
Query: 850 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 909
A + + + + P + LSGGQ+QR+AIARA++ P +LL DE
Sbjct: 119 LARAEKLLKRLRLKPYADRYP-----------LHLSGGQQQRVAIARALMMEPQVLLFDE 167
Query: 910 ATSALDAESECVLQEALERLMR-GRTTVLVAHRLSTIRGVDCIGV-VQDGRIVEQGSHS 966
T+ALD E + ++ L G T V+V H + R V +++G IVEQG S
Sbjct: 168 PTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 3e-19
Identities = 69/243 (28%), Positives = 112/243 (46%), Gaps = 40/243 (16%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
I+L ++ Y + +F D L G++ L+G SG+GKSS++ ++ P +G +
Sbjct: 3 IQLNGINCFYGA--HQALF-DITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 805 MI-----------DGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNI--AYGK-EGAT 849
I K IR LR +G+V Q+ L+ ++ N+ A + G +
Sbjct: 60 NIAGNHFDFSKTPSDKAIR-----ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLS 114
Query: 850 EAEVVEAARAA----NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAIL 905
+ + + A + + P + LSGGQ+QR+AIARA++ P +L
Sbjct: 115 KDQALARAEKLLERLRLKPYADRFP-----------LHLSGGQQQRVAIARALMMEPQVL 163
Query: 906 LLDEATSALDAESECVLQEALERLMR-GRTTVLVAHRLSTIRGVDCIGV-VQDGRIVEQG 963
L DE T+ALD E + + L G T V+V H + R V +++G IVEQG
Sbjct: 164 LFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223
Query: 964 SHS 966
S
Sbjct: 224 DAS 226
|
Length = 242 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 3e-19
Identities = 73/262 (27%), Positives = 123/262 (46%), Gaps = 25/262 (9%)
Query: 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD 176
+ ++ S G+ +AV G +GSGKS+++ +I +P+ G +
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------- 487
Query: 177 QIGLVNQEPALFATTILENILYGKPEATMAEVE--AAASAANAHSFITLLPNGYSTQVGE 234
+I Q + TI +NI++G + E + A I L P T +GE
Sbjct: 488 RISFSPQTSWIMPGTIKDNIIFG---LSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGE 544
Query: 235 RGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEALDRLMVGRTTVVV 293
G+ LSGGQ+ RI++ARA+ K+ + LLD + LD +E I + L +LM +T ++V
Sbjct: 545 GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILV 604
Query: 294 AHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRS 353
+L ++ D + ++ +G GT EL AK ++SL+ E F N S R
Sbjct: 605 TSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLE-----AFDNFSAER- 658
Query: 354 RSTRLSHSLSTKSLSLRSGSLR 375
R++ L+ +L S+ S
Sbjct: 659 RNSILTETLRRVSIDGDSTVFS 680
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 3e-19
Identities = 66/235 (28%), Positives = 115/235 (48%), Gaps = 24/235 (10%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IE +++ +SY + + + + P +AV+G +G+GKST+ P +G V
Sbjct: 4 IETRDLCYSYSGSKEAL--NNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEP--ALFATTILENILYGK-----PEATMAE-VEAA 211
L+ I +R +R +GLV Q P +F+ T+ ++I +G E T+A V +A
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 212 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271
+P+ LSGG+K+R+AIA + P++L+LDE T+ LD
Sbjct: 122 LHMLGLEELRDRVPH-----------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDP 170
Query: 272 GSESIVQEALDRLMV--GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
+ + L+ L G T + H+L + + D + V+ +G++V GT EE+
Sbjct: 171 QGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
Length = 277 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 3e-19
Identities = 60/222 (27%), Positives = 94/222 (42%), Gaps = 34/222 (15%)
Query: 723 DRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGAS 782
+ P + + +E +V Y ++ KD + RI G A+VG +
Sbjct: 303 GKPLAFRFPPPGKRLGKLV---LEFENVSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPN 357
Query: 783 GSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQE-PALFAA-SIFDN 840
G+GKS+++ L+ P +G V +K IG Q L ++ +
Sbjct: 358 GAGKSTLLKLLAGELGPLSGTV------KVGETVK-----IGYFDQHRDELDPDKTVLEE 406
Query: 841 IAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900
++ G E EV G + PVG LSGG+K R+ +A+ +L+
Sbjct: 407 LSEGFPDGDEQEVRAYLGRFGFTG------EDQEKPVGV----LSGGEKARLLLAKLLLQ 456
Query: 901 NPAILLLDEATSALDAESECVLQEALERLMRGR--TTVLVAH 940
P +LLLDE T+ LD ES EALE + T +LV+H
Sbjct: 457 PPNLLLLDEPTNHLDIES----LEALEEALLDFEGTVLLVSH 494
|
Length = 530 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 4e-19
Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 25/240 (10%)
Query: 745 IELRHVDFAYPSRPD---VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 801
I+ ++V + Y S + + D NL ++ G+ ++G +GSGKS++ + P+
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 802 GKVMIDGKDIRRL-NLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEAE---- 852
GKV +DG D NL +R K G+V Q P + A + +++A+G E G E
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124
Query: 853 VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 912
V E+ + ++ + P+ LSGGQKQR+AIA + P ++ DE T+
Sbjct: 125 VDESLKKVGMYEYRRHAPHL-----------LSGGQKQRVAIAGILAMRPECIIFDEPTA 173
Query: 913 ALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 970
LD + ++ L + G T +L+ H + D I V+ G++V +G+ E+
Sbjct: 174 MLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFK 233
|
Length = 280 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 4e-19
Identities = 72/226 (31%), Positives = 113/226 (50%), Gaps = 18/226 (7%)
Query: 745 IELRHVDFAYPS-RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
+EL+ + +YPS V V K +L I AG+ A+VGASGSGKS+++ ++ PT+G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 804 VMIDGKDIRRLNLKSL----RLKIGLVQQE----PALFAASIFDNIAYGKEGATEAEVVE 855
+ G+D+ L+ +L R G + Q L AA N+ + A A +
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQ---NV---EVPAVYAGLER 118
Query: 856 AARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 915
R + L + V + QLSGGQ+QR++IARA++ ++L DE T ALD
Sbjct: 119 KQRLLRAQELLQRLGLEDR--VEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176
Query: 916 AESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGRIV 960
+ S + L +L RG T ++V H + + ++DG IV
Sbjct: 177 SHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.6 bits (219), Expect = 4e-19
Identities = 71/247 (28%), Positives = 127/247 (51%), Gaps = 30/247 (12%)
Query: 745 IELRHVDFAY-PSRPDVV-VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
I+ V++ Y P+ P D +L ++ G AL+G +GSGKS+++ + PT G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 803 KVMIDGKDI------RRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE----GATE 850
KV + DI ++ +K +R K+G+V Q P LF ++ ++A+G + +
Sbjct: 62 KVTVG--DIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEK 119
Query: 851 AEVVEAARAANVHGFVSALPNAY--KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLD 908
AE + A + V L + + K+P +LSGGQ +R+AIA + P +L+LD
Sbjct: 120 AEKIAAEKLEMV-----GLADEFWEKSPF-----ELSGGQMRRVAIAGILAMEPEVLVLD 169
Query: 909 EATSALDAESECVLQEALERLMR-GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHS 966
E T+ LD ++ + + E + + G+T VLV H + + D + +++ G I+ G+ S
Sbjct: 170 EPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPS 229
Query: 967 ELVSRPD 973
++ D
Sbjct: 230 DVFQEVD 236
|
Length = 288 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 5e-19
Identities = 84/250 (33%), Positives = 122/250 (48%), Gaps = 43/250 (17%)
Query: 104 NVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKS-TVVSLIERFYDPNAGH---- 158
+V F V + S AG+T+A+VG SGSGKS T +S++ P A H
Sbjct: 13 SVAFHQEGG-TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGS 71
Query: 159 VLLDNVDIKTL---QLRWLR-DQIGLVNQEPALFATTILENILYGKPEATMAE------- 207
+L D D+ QLR +R ++IG++ QEP T L N L+ +AE
Sbjct: 72 ILFDGEDLLAASERQLRGVRGNKIGMIFQEP----MTSL-NPLH-TIGKQLAEVLRLHRG 125
Query: 208 VEAAASAANAHSFITLLPNGYSTQVGERGV---------QLSGGQKQRIAIARAMLKNPK 258
+ AA+ A A + LL VG +LSGGQ+QR+ IA A+ P
Sbjct: 126 LSRAAARARA---LELL-----ELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPD 177
Query: 259 ILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVV 315
+L+ DE T+ALD ++ + + L L +G + + H L +R D V V+Q G++V
Sbjct: 178 LLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237
Query: 316 ETGTHEELIA 325
ETGT E L A
Sbjct: 238 ETGTTETLFA 247
|
Length = 534 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.1 bits (218), Expect = 5e-19
Identities = 66/191 (34%), Positives = 94/191 (49%), Gaps = 21/191 (10%)
Query: 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA---GHVLLDNVDIKTLQLRW- 173
D + PA K +A +G SG GKST++ R D P A G +L + +I Q+
Sbjct: 38 DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97
Query: 174 -LRDQIGLVNQEPALFATTILENILYGKPEATMAE------VEAAASAANAHSFITLLPN 226
LR Q+G+V Q P F +I ENI + P A + VE + A +
Sbjct: 98 KLRRQVGMVFQRPNPFPKSIYENIAFA-PRANGYKGNLDELVEDSLRRA-------AIWE 149
Query: 227 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV 286
++ E+G LSGGQ+QR+ IARA+ P +LL+DE SALD S V+E L
Sbjct: 150 EVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE 209
Query: 287 GRTTVVVAHRL 297
T ++V H +
Sbjct: 210 QYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 5e-19
Identities = 65/261 (24%), Positives = 127/261 (48%), Gaps = 7/261 (2%)
Query: 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 157
G + K++T Y + ++ + S G+ V ++G +GSGKST++S R + G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVL-ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-G 58
Query: 158 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENI-LYGKPEATMAEVEAAASAAN 216
+ +D V ++ L+ R G++ Q+ +F+ T +N+ YGK + E+ A
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGK--WSDEEIWKVAEEVG 116
Query: 217 AHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 276
S I P + + G LS G KQ + +AR++L KILLLDE ++ LD + +
Sbjct: 117 LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176
Query: 277 VQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRF 336
+++ L + T ++ HR+ + VI++ +V + + ++L+ + + I
Sbjct: 177 IRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP 236
Query: 337 QEMVR--NRDFANPSTRRSRS 355
+ ++ R ++ S R+ R
Sbjct: 237 SDRLKLFPRRNSSKSKRKPRP 257
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 5e-19
Identities = 54/229 (23%), Positives = 104/229 (45%), Gaps = 22/229 (9%)
Query: 745 IELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
I + + + V + ++ G+ L+G +G+GK++ + ++ +P AG
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 804 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAY-----GKEG-ATEAEVVEA 856
+DG D+ + R ++G V L+ + +N+ Y G +G A + E
Sbjct: 62 ATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEEL 120
Query: 857 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 916
A + + R S G +Q++AIARA++ +P +LLLDE T+ LD
Sbjct: 121 ADRLGMEELLD-----------RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDV 169
Query: 917 ESECVLQEALERLMRGRTTVLVA-HRLSTIRGV-DCIGVVQDGRIVEQG 963
+ L+E + +L +L + H + + + D + V+ GR+V +G
Sbjct: 170 MATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 6e-19
Identities = 64/259 (24%), Positives = 112/259 (43%), Gaps = 32/259 (12%)
Query: 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179
+F + G+ +G +G+GK+T + ++ P +G + D+ + R +R IG
Sbjct: 13 NFKV--REGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV-VREPRKVRRSIG 69
Query: 180 LVNQEPALF-ATTILENI-----LYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVG 233
+V Q ++ T EN+ LYG P+ EA A L +
Sbjct: 70 IVPQYASVDEDLTGRENLEMMGRLYGLPKD-----EAEERAEELLELFEL------GEAA 118
Query: 234 ERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTV 291
+R V SGG ++R+ IA +++ P +L LDE T+ LD + + + + L G T +
Sbjct: 119 DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178
Query: 292 VVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPST 350
+ H + + D +A+I G+++ GT EEL + G + + +R S
Sbjct: 179 LTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGK--------DTLESRPRDIQSL 230
Query: 351 RRSRSTRLSHSLSTKSLSL 369
+ S L L L L
Sbjct: 231 KVEVS-MLIAELGETGLGL 248
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 6e-19
Identities = 61/240 (25%), Positives = 96/240 (40%), Gaps = 38/240 (15%)
Query: 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
K + + +D S G+ V ++G +G+GKST++ LI Y P +G
Sbjct: 24 KKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGK 83
Query: 159 VLLDNVDIKTLQLRWLRD-QIGLVNQEPALFATTILENI-LYG-----KPEATMAEVEAA 211
V T ++ L + G + T ENI L G + +V+
Sbjct: 84 V------KVTGKVAPLIELGAGFDPE------LTGRENIYLRGLILGLTRKEIDEKVDEI 131
Query: 212 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271
A FI YS+ G R+A + A P ILLLDE + DA
Sbjct: 132 IEFAELGDFIDQPVKTYSS-----------GMYARLAFSVATHVEPDILLLDEVLAVGDA 180
Query: 272 GSESIVQEALDRLMV----GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 326
+ ++ L+RL +T V+V+H L I+ D ++ GQ+ G+ EE+I
Sbjct: 181 ---AFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237
|
Length = 249 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 7e-19
Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 19/210 (9%)
Query: 127 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL---DNVDIKTLQLRWLRDQIGLVNQ 183
G+T+ VVG SG GKST I G V D + +K + R +R I ++ Q
Sbjct: 46 EGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQ 105
Query: 184 EP-------ALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERG 236
+P I E + P+ + EV+ A + LLPN +
Sbjct: 106 DPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLK--VGLLPN----LINRYP 159
Query: 237 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVA 294
+ SGGQ QRI IARA++ PK+++ DE SALD ++ V L +L +G + + +A
Sbjct: 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIA 219
Query: 295 HRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
H L+ ++++ D V V+ G VE GT++E+
Sbjct: 220 HDLAVVKHISDRVLVMYLGHAVELGTYDEV 249
|
Length = 331 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 8e-19
Identities = 71/234 (30%), Positives = 114/234 (48%), Gaps = 21/234 (8%)
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI-DGK---DIRRL 814
V+ + +L I G+ L+G SGSGKS+++ + + G V++ DG D+
Sbjct: 36 LVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANC 95
Query: 815 NLKSLRL----KIGLVQQEPALFA-ASIFDNIAYGKE--GATEAEVVEAARAANVHGFVS 867
+ +LR ++ +V Q+ AL ++ +N+A+G E G +AE + R V
Sbjct: 96 DAATLRRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRK--RVDEQLELVG 153
Query: 868 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 927
L GE LSGG +QR+ +ARA ILL+DE SALD LQ+ L
Sbjct: 154 -LAQWADRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELL 208
Query: 928 RLMR--GRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 978
L +T V V+H L ++ + I +++ GRI++ G+ E+V P Y
Sbjct: 209 ELQSKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVA 262
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 9e-19
Identities = 78/265 (29%), Positives = 123/265 (46%), Gaps = 46/265 (17%)
Query: 741 IRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSV-IALIERFYDP 799
IR I R VD V K+ + +R G++ LVG SGSGKS+ +AL+
Sbjct: 287 IRKGILKRTVDHNV-------VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI--N 337
Query: 800 TAGKVMIDGKDIRRLNLKSL---RLKIGLVQQEP------ALFAASIFDNIAYGKE---- 846
+ G++ DG+ + LN + L R +I +V Q+P L I I G
Sbjct: 338 SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQI---IEEGLRVHQP 394
Query: 847 ----GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 902
E +V+ G + Y + SGGQ+QRIAIARA++ P
Sbjct: 395 TLSAAQREQQVIAVMEEV---GLDPETRHRYPA-------EFSGGQRQRIAIARALILKP 444
Query: 903 AILLLDEATSALDAESECVLQEALERLMRGR--TTVLVAHRLSTIRGVDC--IGVVQDGR 958
++++LDE TS+LD + + L+ L + + ++H L +R + C + V++ G
Sbjct: 445 SLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRAL-CHQVIVLRQGE 503
Query: 959 IVEQGSHSELVSRPDGAYSR-LLQL 982
+VEQG + + P Y+R LL L
Sbjct: 504 VVEQGDCERVFAAPQQEYTRQLLAL 528
|
Length = 529 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 1e-18
Identities = 55/222 (24%), Positives = 101/222 (45%), Gaps = 22/222 (9%)
Query: 106 TFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 165
F + + S G+ ++G +G+GK+T + ++ +P+AG +D D
Sbjct: 10 RFRDVKKTVQAV-DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFD 68
Query: 166 IKTLQLRWLRDQIGLVNQEPALFA-TTILENI-----LYG-KPEATMAEVEAAASAANAH 218
+ + R ++G V+ L+ T EN+ LYG K + A +E A
Sbjct: 69 VVK-EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME 127
Query: 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 278
+ R S G +Q++AIARA++ +P +LLLDE T+ LD + ++
Sbjct: 128 ELLD-----------RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR 176
Query: 279 EALDRLMVGRTTVVVA-HRLSTIRNV-DTVAVIQQGQVVETG 318
E + +L ++ + H + + + D V V+ +G+VV G
Sbjct: 177 EFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 1e-18
Identities = 64/182 (35%), Positives = 95/182 (52%), Gaps = 15/182 (8%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823
K NL I+ G+ +L+G SG GKS+++ LI PT+G V+++GK I +
Sbjct: 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM---- 57
Query: 824 GLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANV--HGFVSALPNAYKTPVGER 880
+V Q +L ++ +NIA + ++ ++ R A V H + L A G
Sbjct: 58 -VVFQNYSLLPWLTVRENIALAVD-RVLPDLSKSERRAIVEEHIALVGLTEAADKRPG-- 113
Query: 881 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLV 938
QLSGG KQR+AIARA+ P +LLLDE ALDA + LQE L ++ T ++V
Sbjct: 114 --QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV 171
Query: 939 AH 940
H
Sbjct: 172 TH 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 1e-18
Identities = 53/224 (23%), Positives = 111/224 (49%), Gaps = 19/224 (8%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E +NVT + V D S G+ ++G +G+GK+T + +I P++G V
Sbjct: 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57
Query: 160 LLDN--VDIKTLQLRWLRDQIGLVNQEPALF-ATTILENILYGKPEATMAEVEAAASAAN 216
L D +DI R++IG + +E L+ +++ ++Y A + ++ +
Sbjct: 58 LFDGKPLDIAA------RNRIGYLPEERGLYPKMKVIDQLVY---LAQLKGLKKEEARRR 108
Query: 217 AHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 276
++ L S +R +LS G +Q++ A++ +P++L+LDE S LD + +
Sbjct: 109 IDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVEL 166
Query: 277 VQEALDRLM-VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 318
+++ + L G+T ++ H++ + + D V ++ +G+ V G
Sbjct: 167 LKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 1e-18
Identities = 72/237 (30%), Positives = 120/237 (50%), Gaps = 28/237 (11%)
Query: 747 LRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 806
LR+V F P R + +L AG+ L+G +GSGKS+++ ++ R P+ G++++
Sbjct: 14 LRNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70
Query: 807 DGKDIRRLNLKSLRLKIG-LVQQEPALFAASIFDNIAYGKE---------GATEAEVVEA 856
D + + + K+ K+ L QQ PA ++ + +A G+ GA + E VE
Sbjct: 71 DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEE 130
Query: 857 ARAANVHGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALD 915
A + + L P+ R V LSGG++QR IA V ++ LLLDE TSALD
Sbjct: 131 AIS------LVGL-----KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
Query: 916 AESECVLQEALERL--MRGRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELV 969
+ + + RL RG T + V H ++ R D + ++ G ++ QG+ +EL+
Sbjct: 180 IAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 64/237 (27%), Positives = 119/237 (50%), Gaps = 12/237 (5%)
Query: 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 801
+ ++ +Y R V D +L + +G+ L+G +G+GK++ +I P +
Sbjct: 2 MSTLVAENLAKSYKKRK---VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS 58
Query: 802 GKVMIDGKDIRRLNL-KSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARA 859
GK+++D +DI +L + K RL IG + QE ++F ++ DNI E + +A
Sbjct: 59 GKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNI----MAVLEIREKDLKKA 114
Query: 860 ANVHGFVSALPNAYKTPV-GERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 918
+ L + T + + LSGG+++R+ IARA+ NP +LLDE + +D +
Sbjct: 115 ERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA 174
Query: 919 ECVLQEALERLMRGRTTVLVA-HRL-STIRGVDCIGVVQDGRIVEQGSHSELVSRPD 973
+Q ++ L VL+ H + T+ D ++ DG+++ +GS E+V+ D
Sbjct: 175 VIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNED 231
|
Length = 243 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 2e-18
Identities = 72/239 (30%), Positives = 114/239 (47%), Gaps = 25/239 (10%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVS----LIERFYDPN 155
IE +++ S+ V + ++ P A++G SGSGKST++ LIE + +
Sbjct: 4 IEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 156 -AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYG-------KPEATMA 206
+G V LD DI + + LR ++ +V Q P +I EN+ G K + +
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQ 120
Query: 207 E-VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 265
E V A A L + ++ +LSGGQ+QR+ IARA+ P++LL DE
Sbjct: 121 ERVRWALEKAQ-------LWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEP 173
Query: 266 TSALDAGSESIVQEALDRLMVGRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTHEEL 323
T+ LD + + ++ L T V+V H R D VA + +GQ+VE G E+
Sbjct: 174 TANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232
|
Length = 250 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 2e-18
Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 20/190 (10%)
Query: 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL---QLRW 173
+ D ++ G+ V + G SGSGK+T+++LI G + + ++ +L
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 174 LRDQIGLVNQEPALF-ATTILENILYGKPEATMA-----EVEAAASAANAHSFITLLPNG 227
LR IG + Q L T +N+ MA + + A + + + G
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNV-------QMALELQPNLSYQEARERARAMLEAV--G 130
Query: 228 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV- 286
+ LSGGQKQR+AIARA++ PK++L DE T+ALD+ S V E + +L
Sbjct: 131 LGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190
Query: 287 -GRTTVVVAH 295
G T ++V H
Sbjct: 191 QGCTILIVTH 200
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 2e-18
Identities = 62/229 (27%), Positives = 110/229 (48%), Gaps = 13/229 (5%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IE KNV+ + I D S G+ A+VG +G+GK+T++SL+ + P++G V
Sbjct: 32 IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 160 LLDNVDIKTLQLRW-LRDQIGLVN---QEPALFATTILENILYGKPEATMAEVEAAASAA 215
L + + LR +IGLV+ E T+ + +L G A++ + +A
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGF-FASIGIYQEDLTAE 147
Query: 216 NAHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274
+ + LL + + +R LS G+++R+ IARA++K+P++L+LDE LD +
Sbjct: 148 DLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAR 207
Query: 275 SIVQEALDRLMV---GRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGT 319
+ L+ L + V H I ++++G+VV G
Sbjct: 208 EQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 2e-18
Identities = 61/227 (26%), Positives = 102/227 (44%), Gaps = 25/227 (11%)
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 818
D N ++R G+ +G +G+GK++ I ++ PT+G + G D+ R +
Sbjct: 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRK 63
Query: 819 LRLKIGLVQQEPALFAASIFDNIAYGKE---------GATEAEVVEAARAANVHGFVSAL 869
+R IG+V Q ++ D G+E G + E E RA + L
Sbjct: 64 VRRSIGIVPQYASV------DEDLTGRENLEMMGRLYGLPKDEAEE--RAEELLELFE-L 114
Query: 870 PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL 929
A PVG SGG ++R+ IA +++ P +L LDE T+ LD + + + + L
Sbjct: 115 GEAADRPVG----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL 170
Query: 930 MR-GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDG 974
G T +L H + + D I ++ GRI+ +G+ EL R
Sbjct: 171 KEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGK 217
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.5 bits (211), Expect = 3e-18
Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 11/232 (4%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----P 154
IE +N+ Y D + +I A++G SG GKST + + R D
Sbjct: 8 IETENLNLFYT---DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK 64
Query: 155 NAGHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAA 212
G+V+ + +I + LR +IG+V Q P F +I +NI YG + +
Sbjct: 65 IEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLD 124
Query: 213 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272
+ L N ++ + LSGGQ+QR+ IAR + P ++L+DE TSALD
Sbjct: 125 EIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPI 184
Query: 273 SESIVQEALDRLMVGRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEEL 323
S ++E + L T ++V H + R D A G + E + +EL
Sbjct: 185 STGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236
|
Length = 254 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 3e-18
Identities = 62/240 (25%), Positives = 109/240 (45%), Gaps = 25/240 (10%)
Query: 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
+ L V ++ R + ++ G L+G +GSGKS+++ L+ P AG
Sbjct: 1 GLRLSRVSWSAGGRL---IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGT 57
Query: 804 VMIDGKDIRRLNLKSLRLKIGLVQQE-PALFAASIFDNIAYGK---------EGATEAEV 853
V + G D+ L+ ++ ++ LV+Q+ ++ D +A G+ + +A V
Sbjct: 58 VDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAV 117
Query: 854 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 913
V+ A A T LSGG++QR+ +ARA+ + P +LLLDE T+
Sbjct: 118 VDRALART--ELSHLADRDMST--------LSGGERQRVHVARALAQEPKLLLLDEPTNH 167
Query: 914 LDAESECVLQEALERLMRGRTTVLVA-HRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSR 971
LD ++ + L TV+ A H L+ D + V+ GR+V G E+++
Sbjct: 168 LDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTP 227
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 3e-18
Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 36/220 (16%)
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 818
V D + + G+ L+G +G+GK++ I +I P +G+V+ DGK + +
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD----IA 67
Query: 819 LRLKIGLVQQEPALF-AASIFDNIAY-------GKEGATEA-----EVVEAARAANVHGF 865
R +IG + +E L+ + D + Y KE A E +E + AN
Sbjct: 68 ARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN---- 123
Query: 866 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEA 925
+R +LS G +Q++ AV+ +P +L+LDE S LD + +L++
Sbjct: 124 -------------KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDV 170
Query: 926 LERLMR-GRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQG 963
+ L R G+T +L H++ + D + ++ GR V G
Sbjct: 171 IRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 3e-18
Identities = 70/231 (30%), Positives = 112/231 (48%), Gaps = 18/231 (7%)
Query: 103 KNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD 162
+NV+F P R + S+ FPAGK ++G +GSGKST++ ++ R P+ G +LLD
Sbjct: 15 RNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLD 71
Query: 163 NVDIKTLQLRWLRDQIG-LVNQEPALFATTILENILYGKPEATMA----EVEAAASAANA 217
+++ + ++ L Q PA T+ E + G+ A A
Sbjct: 72 AQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEA 131
Query: 218 HSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 276
S + L P + R V LSGG++QR IA + ++ + LLLDE TSALD +
Sbjct: 132 ISLVGLKP------LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVD 185
Query: 277 VQEALDRL--MVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 324
V + RL G T + V H ++ R D + ++ G+++ GT EL+
Sbjct: 186 VLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 4e-18
Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 16/178 (8%)
Query: 109 YPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT 168
Y +P D ++ +G+ + V+G SG GK+T+++LI F G + LD ++
Sbjct: 11 YGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG 67
Query: 169 LQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNG 227
+ G+V Q L + +N+ +G A + +++ A + L
Sbjct: 68 PGA-----ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGL---- 118
Query: 228 YSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL 284
+R + QLSGGQ+QR+ IARA+ NP++LLLDE ALDA + +Q L +L
Sbjct: 119 --EGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKL 174
|
Length = 255 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 4e-18
Identities = 64/210 (30%), Positives = 107/210 (50%), Gaps = 12/210 (5%)
Query: 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL---QLRW 173
+ + S+ G+TV ++G SG GKST+ L+ P G V D+ L Q R
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 174 LRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQ 231
R + LV Q+ A+ + I+ G+P + ++ + A + ++ G ++
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQII-GEPLRHLTSLDESEQKARIAELLDMV--GLRSE 142
Query: 232 VGER-GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGR 288
++ QLSGGQ QRI IARA+ PK+++LDEA S LD ++++ E L +L G
Sbjct: 143 DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGT 202
Query: 289 TTVVVAHRLSTIRNV-DTVAVIQQGQVVET 317
+ + H L +++ VAV+ +GQ+VE
Sbjct: 203 AYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.4 bits (211), Expect = 4e-18
Identities = 69/242 (28%), Positives = 115/242 (47%), Gaps = 18/242 (7%)
Query: 97 NGNIEFKNVTFSYPSRPDVIIFR---DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD 153
+ +I NV+++Y ++ F+ + S+ F K V+G +GSGKST++ L
Sbjct: 4 SKDIILDNVSYTY-AKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII 62
Query: 154 PNAGHVLLDNVDI-----KTLQLRWLRDQIGLVNQEP--ALFATTILENILYGKPEATMA 206
G ++ + I K +++ LR +IGLV Q P LF TI ++I +G
Sbjct: 63 SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGEN 122
Query: 207 EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEAT 266
+ EA + L P Y V +LSGGQK+R+A+A + + L+LDE T
Sbjct: 123 KQEAYKKVPELLKLVQL-PEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPT 178
Query: 267 SALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEEL 323
LD E +RL + ++V H + + R D V V+ +G+V+ G+ E+
Sbjct: 179 GGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238
Query: 324 IA 325
+
Sbjct: 239 FS 240
|
Length = 289 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 5e-18
Identities = 72/231 (31%), Positives = 110/231 (47%), Gaps = 17/231 (7%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKS 818
V + +L I G++ L+G SG GKS++ L+ P G V G+D+ +L+ ++
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 819 LRLKIGLV-QQEPALFAA--SIFDNIAYGKEGATE-AEVVEAARAANVHGFVSALPN-AY 873
R + LV Q P+ ++ I T E + AR A + V A
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDAD 145
Query: 874 KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-- 931
K P QLSGGQ QRI IARA+ P +++LDEA S LD + V+ E L +L +
Sbjct: 146 KLP-----RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAF 200
Query: 932 GRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 981
G + + H L + + V+ G+IVE+ ++L+S A R LQ
Sbjct: 201 GTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHPA-GRNLQ 250
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 6e-18
Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 32/240 (13%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+E R++ R + D +L +R G+ A++G +G+GKS+++ + P +G+V
Sbjct: 3 LEARNLSVRLGGRT---LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPAL-FAASIFDNIAYG------KEGATEAEVVEAA 857
++G+ + + L + ++ Q +L F ++ + +A G +A V A
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119
Query: 858 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL-------KNPAILLLDEA 910
++ Y QLSGG++QR+ +AR VL P LLLDE
Sbjct: 120 AQVDLAHLAG---RDYP--------QLSGGEQQRVQLAR-VLAQLWEPDGPPRWLLLDEP 167
Query: 911 TSALD-AESECVLQEALERLMRGRTTVL-VAHRLS-TIRGVDCIGVVQDGRIVEQGSHSE 967
TSALD A VL+ A + V+ V H L+ R D I ++ GR+V G+ +E
Sbjct: 168 TSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227
|
Length = 258 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 7e-18
Identities = 62/234 (26%), Positives = 114/234 (48%), Gaps = 19/234 (8%)
Query: 104 NVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163
N+ FS + ++ ++ G+ +A+ G +GSGK++++ LI +P+ G
Sbjct: 39 NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEG------ 92
Query: 164 VDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEV--EAAASAANAHSFI 221
IK +I +Q + TI ENI++G + E ++ A I
Sbjct: 93 -KIKH------SGRISFSSQFSWIMPGTIKENIIFG---VSYDEYRYKSVVKACQLEEDI 142
Query: 222 TLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEA 280
T P +T +GE G+ LSGGQ+ RI++ARA+ K+ + LLD LD +E I +
Sbjct: 143 TKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESC 202
Query: 281 LDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLI 334
+ +LM +T ++V ++ ++ D + ++ +G GT EL + ++S +
Sbjct: 203 VCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKL 256
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.3 bits (208), Expect = 8e-18
Identities = 67/226 (29%), Positives = 105/226 (46%), Gaps = 28/226 (12%)
Query: 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG-------HVLLDNVDIKTLQL 171
RD + + +G SG GKSTV+ + R D G H L +V K +
Sbjct: 25 RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84
Query: 172 RWLRDQIGLVNQEPALFATTILENILYG----KPEATMAE-VEAAASAANAHSFITLLPN 226
+R IG+V Q+P F+ +I +N+ +G + + + + V+ A A L +
Sbjct: 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGA-------ALWD 137
Query: 227 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV 286
++ G+ LSGGQ+QR+ IARA+ P++LLLDE SALD + V+E + L
Sbjct: 138 EVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK 197
Query: 287 GRTTVVVAHRLSTIRNV-DTVAVI--------QQGQVVETGTHEEL 323
T +V H + V DT A + G +VE G ++
Sbjct: 198 DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQI 243
|
Length = 261 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 8e-18
Identities = 73/241 (30%), Positives = 111/241 (46%), Gaps = 27/241 (11%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA--- 156
IE N+ Y VI + + P A++G SG GKST++ R + N
Sbjct: 5 IETVNLRVYY-GSNHVI--KGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEAR 61
Query: 157 --GHVLLDNVDIKTLQLRWL--RDQIGLVNQEPALFA-TTILENILYG-------KPEAT 204
G V L +I + + + R ++G+V Q P F TI +N+ G K +
Sbjct: 62 VEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKE 121
Query: 205 MAE-VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLD 263
+ E VE A A + N Y + LSGGQ+QR+ IARA+ PKILL+D
Sbjct: 122 LDERVEWALKKAALWDEVKDRLNDYPSN-------LSGGQRQRLVIARALAMKPKILLMD 174
Query: 264 EATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEE 322
E T+ +D + ++E L L T V+V H + V D VA + G+++E G +
Sbjct: 175 EPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234
Query: 323 L 323
+
Sbjct: 235 V 235
|
Length = 253 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 8e-18
Identities = 66/251 (26%), Positives = 119/251 (47%), Gaps = 48/251 (19%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
I+ R+V+ Y D +V + ++ G+ L+G +G+GK++ + ++ P AG +
Sbjct: 8 IDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIA---------------YGKEGAT 849
+ G+ + + R ++G+V Q FDN+ +G A
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQ---------FDNLDPDFTVRENLLVFGRYFGLSAAA 114
Query: 850 EAEVV----EAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAIL 905
+V E A+ L N VGE LSGG K+R+ +ARA++ +P +L
Sbjct: 115 ARALVPPLLEFAK----------LENKADAKVGE----LSGGMKRRLTLARALVNDPDVL 160
Query: 906 LLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQG 963
+LDE T+ LD ++ ++ E L L+ RG+T +L H + R D + V+++GR + +G
Sbjct: 161 VLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEG 220
Query: 964 SHSELVSRPDG 974
+ L+ G
Sbjct: 221 APHALIESEIG 231
|
Length = 306 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.8 bits (207), Expect = 1e-17
Identities = 64/205 (31%), Positives = 97/205 (47%), Gaps = 26/205 (12%)
Query: 129 KTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDI--KTLQLRWLRDQIGLV 181
+ A++G SG GKST + + R + G +L + +I K+ + LR +G+V
Sbjct: 51 EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMV 110
Query: 182 NQEPALFATTILENILYG------KPEATMAE-VEAAASAANAHSFIT--LLPNGYSTQV 232
Q+P F +I +N+ YG K + T+ E VE + A + L N Y
Sbjct: 111 FQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYG--- 167
Query: 233 GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVV 292
LSGGQ+QR+ IAR + P ++L+DE TSALD S V+E + L + ++
Sbjct: 168 ------LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIII 221
Query: 293 VAHRL-STIRNVDTVAVIQQGQVVE 316
V H + R D A G V E
Sbjct: 222 VTHNMQQAARISDKTAFFLNGYVNE 246
|
Length = 271 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 1e-17
Identities = 50/187 (26%), Positives = 92/187 (49%), Gaps = 41/187 (21%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALI--ERFYDPTAGKVMIDGKDIRRLNLKSL 819
+ K+ + + + G+ A++G SG+GKS+++ + R +G+V+I+G+ + + +S
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RSF 80
Query: 820 RLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVG 878
R IG V Q+ L ++ + + + AA + G
Sbjct: 81 RKIIGYVPQDDILHPTLTVRETLMF---------------AAKLRG-------------- 111
Query: 879 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTTVL 937
LSGG+++R++IA ++ NP++L LDE TS LD+ S + L RL GRT +
Sbjct: 112 -----LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIIC 166
Query: 938 VAHRLST 944
H+ S+
Sbjct: 167 SIHQPSS 173
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 1e-17
Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 19/228 (8%)
Query: 100 IEFKNVTFSYPS-RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
IE +++ + ++ I + + G+TVA+VG SGSGKST+++++ DP++G
Sbjct: 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66
Query: 159 VLLDNVDIKTL------QLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAA 211
V L + L LR +G V Q L T LEN+ A E+
Sbjct: 67 VRLLGQPLHKLDEDARAALR--ARHVGFVFQSFHLIPNLTALENV------ALPLELRGE 118
Query: 212 ASAANAHSFITLLPN-GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALD 270
+SA + LL G ++ QLSGG++QR+A+ARA P +L DE T LD
Sbjct: 119 SSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLD 178
Query: 271 AGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVE 316
+ + + L L G T V+V H D ++ G++VE
Sbjct: 179 RATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 1e-17
Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 61/252 (24%)
Query: 100 IEFKNVTFSYPS-------------------RPDVIIFRDFSIFFPAGKTVAVVGGSGSG 140
IE +NV+ SYP+ + +D S P G+ + ++G +G+G
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 141 KSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD-QIGLVNQEPALFATTILENI--- 196
KST++ L+ Y P++G V + ++ L G P L T ENI
Sbjct: 61 KSTLLRLLAGIYPPDSGTVTVRG------RVSSLLGLGGGF---NPEL---TGRENIYLN 108
Query: 197 --LYGKPEATMAEVEAAASAANAHSFI---TLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251
L G + E I + L + V S G K R+A A
Sbjct: 109 GRLLGLSRKEIDEKID---------EIIEFSELGDFIDLPVKT----YSSGMKARLAFAI 155
Query: 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRL--MV--GRTTVVVAHRLSTIRNV-DTV 306
A P ILL+DE + G + ++ RL ++ G+T ++V+H S+I+ + D
Sbjct: 156 ATALEPDILLIDEVLA---VGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRA 212
Query: 307 AVIQQGQVVETG 318
V+++G++ G
Sbjct: 213 LVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 1e-17
Identities = 73/240 (30%), Positives = 118/240 (49%), Gaps = 39/240 (16%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKSS----VIALIERFYDPTAGKVMIDGKDIRRLNLKSL 819
LR+ G++ +VG SG GKS+ +I L++ T G+V GKD+ +
Sbjct: 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK----ATDGEVAWLGKDLLGMKDDEW 93
Query: 820 RLK---IGLVQQEPALFAAS------IFDNIA-----YGKEGATEAEVVEAARAANVHGF 865
R I ++ Q+P AS I + IA Y + + EV + +A +
Sbjct: 94 RAVRSDIQMIFQDPL---ASLNPRMTIGEIIAEPLRTYHPK-LSRQEVKDRVKAMMLK-- 147
Query: 866 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD----AESECV 921
V LPN + + SGGQ QRI IARA++ P +++ DE SALD A+ +
Sbjct: 148 VGLLPNL----INRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNL 203
Query: 922 LQEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 980
LQ+ L+R M G + + +AH L+ ++ + D + V+ G VE G++ E+ P Y++ L
Sbjct: 204 LQQ-LQREM-GLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTKAL 261
|
Length = 331 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 1e-17
Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 40/242 (16%)
Query: 103 KNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD 162
+N+ SY R V D S+ +G+ V ++G +G+GK+T +I P++G +LLD
Sbjct: 8 ENLAKSYKKRKVV---NDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLD 64
Query: 163 NVDIKTLQL-RWLRDQIGLVNQEPALF-ATTILENIL------YGKPEATMAEVEAAASA 214
+ DI L + + R IG + QE ++F T+ +NI+ + + E A
Sbjct: 65 DEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALL 124
Query: 215 ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274
H IT L + + LSGG+++R+ IARA+ NPK +LLDE + +D +
Sbjct: 125 EEFH--ITHLRD-------SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAV 175
Query: 275 SIVQEALDRLMVGRTTVVVAHR----LSTIRNV-------DTVAVIQQGQVVETGTHEEL 323
+Q + L R L T NV D +I G+V+ G+ EE+
Sbjct: 176 IDIQRIIKHL---------KDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEI 226
Query: 324 IA 325
+
Sbjct: 227 VN 228
|
Length = 243 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 1e-17
Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 18/229 (7%)
Query: 104 NVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163
N++ Y R + S+ G+ V ++G +G+GK+T +I P++G +LLD
Sbjct: 5 NLSKRYGKRK---VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDG 61
Query: 164 VDIKTLQL-RWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFI 221
DI L + + R IG + QE ++F T+ ENIL + + +
Sbjct: 62 QDITKLPMHKRARLGIGYLPQEASIFRKLTVEENIL---AVLEIRGLSKKEREEKLEELL 118
Query: 222 TLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS----ESIV 277
+ + LSGG+++R+ IARA+ NPK LLLDE + +D + + I+
Sbjct: 119 EEF--HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKII 176
Query: 278 QEALDRLMVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELIA 325
+ DR G ++ H + T+ D +I +G+V+ GT EE+ A
Sbjct: 177 KILKDR---GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 1e-17
Identities = 55/216 (25%), Positives = 109/216 (50%), Gaps = 9/216 (4%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL-KSLR 820
V +L ++ G+ L+G +G+GK++ +I P +GK+++DG+DI +L + K R
Sbjct: 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74
Query: 821 LKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGE 879
L IG + QE ++F ++ +NI E ++ + +
Sbjct: 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKS----- 129
Query: 880 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLV 938
+ LSGG+++R+ IARA+ NP LLLDE + +D + +Q+ ++ L RG ++
Sbjct: 130 KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLIT 189
Query: 939 AHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPD 973
H + T+ D ++ +G+++ +G+ E+ +
Sbjct: 190 DHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANEL 225
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 2e-17
Identities = 57/223 (25%), Positives = 96/223 (43%), Gaps = 50/223 (22%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
I L ++ AY RP + ++ +L + G+ LVG +G+GKS+++ ++ +P +G+V
Sbjct: 4 ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG----------KEGATEAEV 853
L++G + QEP L ++ D + G E A
Sbjct: 61 TRPKG-----------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 854 VEAARAANVHGFVSALPNAYK------------------TPVGERGVQLSGGQKQRIAIA 895
+ + + PV LSGG ++R+A+A
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSS----LSGGWRRRVALA 165
Query: 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLV 938
RA+L+ P +LLLDE T+ LD ES L++ L+R TV+V
Sbjct: 166 RALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PGTVIV 205
|
Length = 530 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 53/192 (27%), Positives = 98/192 (51%), Gaps = 12/192 (6%)
Query: 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLR 820
+L I G ++G++G+GKS+++ I PT+G+++IDG D+ + ++
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRA 79
Query: 821 LKIGLVQQEPALFAA---SIFDNIAY-----GKEGATEAEVVEAARAANVHGFVSALPNA 872
+ V Q+P A +I +N+A K G + A + R ++ ++ L
Sbjct: 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSA--LNERRRSSFRERLARLGLG 137
Query: 873 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-- 930
+ + +R LSGGQ+Q +++ A L P ILLLDE T+ALD ++ + E +++
Sbjct: 138 LENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEE 197
Query: 931 RGRTTVLVAHRL 942
TT++V H +
Sbjct: 198 HKLTTLMVTHNM 209
|
Length = 263 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 2e-17
Identities = 58/229 (25%), Positives = 116/229 (50%), Gaps = 5/229 (2%)
Query: 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
G++ ++ + Y + V+ ++ + I GQ L+G +GSGKS++++ R + T G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVL-ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG 58
Query: 803 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI-AYGKEGATEAEVVEAARAAN 861
+ IDG + L+ R G++ Q+ +F+ + N+ YGK ++ E+ + A
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKW--SDEEIWKVAEEVG 116
Query: 862 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 921
+ + P + + G LS G KQ + +AR+VL ILLLDE ++ LD + V
Sbjct: 117 LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176
Query: 922 LQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 970
+++ L++ T +L HR+ + V+++ ++ + S +L++
Sbjct: 177 IRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN 225
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 2e-17
Identities = 76/253 (30%), Positives = 121/253 (47%), Gaps = 54/253 (21%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKS----SVIALIERFYDPT------AGKVMIDGKDI 811
V D +L+I AG++ ALVG SGSGKS S++ L+ P+ +G + G+ +
Sbjct: 24 VVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL-----PSPPVVYPSGDIRFHGESL 78
Query: 812 RRLNLKSLRL----KIGLVQQEPALFAASIFDNIAYGKEGATEAEVV--------EAARA 859
+ ++LR KI ++ QEP + + + + EV+ EAAR
Sbjct: 79 LHASEQTLRGVRGNKIAMIFQEP-MVSLNPLHTLE-----KQLYEVLSLHRGMRREAARG 132
Query: 860 ANVHGFVSALPNAYKTPVGERGV---------QLSGGQKQRIAIARAVLKNPAILLLDEA 910
++ L VG R QLSGG++QR+ IA A+L P +L+ DE
Sbjct: 133 E----ILNCLDR-----VGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEP 183
Query: 911 TSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSE 967
T+ALD + + + L L + + + H LS +R + D + V+Q+GR VEQ +
Sbjct: 184 TTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAAT 243
Query: 968 LVSRPDGAYSRLL 980
L S P Y++ L
Sbjct: 244 LFSAPTHPYTQKL 256
|
Length = 529 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 2e-17
Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 44/246 (17%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E +N++ R + D S+ G+ VA++G +G+GKST++ + P++G V
Sbjct: 3 LEARNLSVRLGGRT---LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPAL-FATTILENILYGK-------------PEATM 205
L+ + L + ++ Q +L F T+ E + G+ A +
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119
Query: 206 AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML------KNPKI 259
A+V+ A A + QLSGG++QR+ +AR + P+
Sbjct: 120 AQVDLAHLAGRDYP------------------QLSGGEQQRVQLARVLAQLWEPDGPPRW 161
Query: 260 LLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLS-TIRNVDTVAVIQQGQVVE 316
LLLDE TSALD + V +L G +VV H L+ R D + ++ QG++V
Sbjct: 162 LLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA 221
Query: 317 TGTHEE 322
GT E
Sbjct: 222 DGTPAE 227
|
Length = 258 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 61/235 (25%), Positives = 120/235 (51%), Gaps = 18/235 (7%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
I + +V +Y ++ V D +L I G +++G +G+GKS++++++ R +G++
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYGK----EGATEAEVVEAARA 859
IDG ++ K L K+ +++QE + + ++ D + +G+ +G E
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE 118
Query: 860 ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 919
A + + L + Y +LSGGQ+QR IA + ++ +LLDE + LD +
Sbjct: 119 AIEYLHLEDLSDRYLD-------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHS 171
Query: 920 CVLQEALERLMR--GRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSR 971
+ + L RL G+T V+V H ++ D I +++G++V+QGS E++
Sbjct: 172 VQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226
|
Length = 252 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 2e-17
Identities = 63/223 (28%), Positives = 99/223 (44%), Gaps = 50/223 (22%)
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSS---VIALIERFYDPTAGKVMIDGKDIRRLN 815
+ K NL I+ G+ AL+G +GSGKS+ I + Y+ T G+++ G+DI +
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK-YEVTEGEILFKGEDI--TD 68
Query: 816 LKS---LRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNA 872
L RL I L Q P G A+ + R N GF
Sbjct: 69 LPPEERARLGIFLAFQYPPEI------------PGVKNADFL---RYVNE-GF------- 105
Query: 873 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR- 931
SGG+K+R I + +L P + +LDE S LD ++ ++ E + +L
Sbjct: 106 ------------SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE 153
Query: 932 GRTTVLVAHR---LSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971
G++ +++ H L I+ D + V+ DGRIV+ G EL
Sbjct: 154 GKSVLIITHYQRLLDYIKP-DRVHVLYDGRIVKSGD-KELALE 194
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 2e-17
Identities = 64/242 (26%), Positives = 116/242 (47%), Gaps = 36/242 (14%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
++ + V+F+ +R IF + S+ P GK A++G SG GK+T++ LI P+ G +
Sbjct: 8 VDMRGVSFTRGNRC---IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 160 LLDNVDIKTL---QLRWLRDQIGLVNQEPALFA-TTILENILYGKPEAT----------- 204
L D +I + +L +R ++ ++ Q ALF + +N+ Y E T
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTV 124
Query: 205 MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE 264
M ++EA A L+P+ +LSGG +R A+ARA+ P +++ DE
Sbjct: 125 MMKLEAVGLRGAAK----LMPS-----------ELSGGMARRAALARAIALEPDLIMFDE 169
Query: 265 ATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIRNVDTVAVIQQGQ-VVETGTHE 321
D + ++ + + L +G T VVV+H + + ++ A I + +V G+ +
Sbjct: 170 PFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQ 229
Query: 322 EL 323
L
Sbjct: 230 AL 231
|
Length = 269 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 2e-17
Identities = 62/219 (28%), Positives = 110/219 (50%), Gaps = 20/219 (9%)
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 818
D + + R+R G+ L+G +G+GK++ I ++ PT+G+ + G D+ R +
Sbjct: 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPRE 70
Query: 819 LRLKIGLVQQEPAL-FAASIFDNIA-----YGKEGATEAEVVEAARAANVHGFVSALPNA 872
+R +IG+V Q+ ++ + ++N+ YG GA E R + FV L A
Sbjct: 71 VRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRE-----RIDELLDFV-GLLEA 124
Query: 873 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR- 931
V SGG ++R+ IAR+++ P +L LDE T LD ++ + E +E+L
Sbjct: 125 ADRLVK----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE 180
Query: 932 -GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSEL 968
G T +L H + + D + ++ GRI+ +G+ EL
Sbjct: 181 FGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 3e-17
Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 19/213 (8%)
Query: 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA---GHVLLDNVDIKTLQLR- 172
++ + P + A +G SG GKST++ R D P G V ++ +
Sbjct: 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86
Query: 173 -WLRDQIGLVNQEPALFATTILENILYGKP----EATMAE-VEAAASAANAHSFITLLPN 226
+R +IG+V Q+P F +I +NI YG + M E VE + A L +
Sbjct: 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQA-------ALWD 139
Query: 227 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV 286
++ + G+ LSGGQ+QR+ IARA+ P+++L+DE SALD S ++E + L
Sbjct: 140 EVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE 199
Query: 287 GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT 319
T ++V H + V + ++ E G
Sbjct: 200 QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGG 232
|
Length = 264 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 3e-17
Identities = 68/243 (27%), Positives = 122/243 (50%), Gaps = 28/243 (11%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+++R V F +R + +F + +L + G+ A++G SG GK++++ LI P G++
Sbjct: 8 VDMRGVSF---TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 805 MIDGKDI---RRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGATE-------AEV 853
+ DG++I R L ++R ++ ++ Q ALF ++FDN+AY T+ + V
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTV 124
Query: 854 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 913
+ A + G +P+ +LSGG +R A+ARA+ P +++ DE
Sbjct: 125 MMKLEAVGLRGAAKLMPS-----------ELSGGMARRAALARAIALEPDLIMFDEPFVG 173
Query: 914 LDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVS 970
D + VL + + L G T V+V+H + + + D +V D +IV GS L +
Sbjct: 174 QDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233
Query: 971 RPD 973
PD
Sbjct: 234 NPD 236
|
Length = 269 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 5e-17
Identities = 61/235 (25%), Positives = 121/235 (51%), Gaps = 22/235 (9%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
I +NV+ SY ++ + D S+ P G +++G +G+GKST++S++ R ++G +
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENIL------YGKPEATMAEVEAAAS 213
+D +++ + + L ++ ++ QE + + + +++ Y + T E +
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLT-KEDRRIIN 117
Query: 214 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALD-AG 272
A + + L + Y +LSGGQ+QR IA + ++ +LLDE + LD
Sbjct: 118 EAIEYLHLEDLSDRYLD-------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKH 170
Query: 273 SESIVQEALDRLM--VGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 324
S I++ L RL +G+T VVV H ++ D + ++ G+VV+ G+ +E+I
Sbjct: 171 SVQIMK-ILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII 224
|
Length = 252 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 6e-17
Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 19/205 (9%)
Query: 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN---VDI-KTLQLRWLRDQIGLV 181
PA A+ G SGSGK++++++I P+ G + L+ VD K + L + +IG V
Sbjct: 22 PARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYV 81
Query: 182 NQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240
Q+ LF T+ N+ YG ++ A+ + + LL G + LS
Sbjct: 82 FQDARLFPHYTVRGNLRYGMWKSMRAQFDQL---------VALL--GIEHLLDRYPGTLS 130
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLS 298
GG+KQR+AI RA+L P++LL+DE ++LD + + L+RL + + V+H L
Sbjct: 131 GGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLD 190
Query: 299 TI-RNVDTVAVIQQGQVVETGTHEE 322
+ R D V V++ G+V +G EE
Sbjct: 191 EVLRLADRVVVLENGKVKASGPLEE 215
|
Length = 352 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (203), Expect = 6e-17
Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 22/243 (9%)
Query: 743 GEIELRHVDFAYPSRPDVVVFKDFN---LRIRAGQSQALVGASGSGKSSVIALIERFYDP 799
+I L +V + Y ++ FK N L + + ++G +GSGKS++I L
Sbjct: 5 KDIILDNVSYTY-AKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63
Query: 800 TAGKVMIDG----KDIRRLN-LKSLRLKIGLVQQEP--ALFAASIFDNIAYG--KEGATE 850
G+ ++ +++++ +K LR +IGLV Q P LF +I +IA+G G +
Sbjct: 64 ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENK 123
Query: 851 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 910
E + + + V LP Y V +LSGGQK+R+A+A + + L+LDE
Sbjct: 124 QEAYK--KVPELLKLVQ-LPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEP 177
Query: 911 TSALDAESECVLQEALERLMR--GRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSE 967
T LD + E ERL + + ++V H + + R D + V+ +G+++ GS E
Sbjct: 178 TGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237
Query: 968 LVS 970
+ S
Sbjct: 238 IFS 240
|
Length = 289 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.6 bits (201), Expect = 6e-17
Identities = 71/250 (28%), Positives = 115/250 (46%), Gaps = 34/250 (13%)
Query: 736 EPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIER 795
E V +RGE + Y V ++ + I G A++G +G GKS+++ + R
Sbjct: 3 ESVARLRGE----QLTLGYGKY---TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSR 55
Query: 796 FYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGK--------- 845
P G V +DG+ I+ K + +IGL+ Q ++ + +A G+
Sbjct: 56 LMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTR 115
Query: 846 -EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ-LSGGQKQRIAIARAVLKNPA 903
E V +A +A + T + ++ V LSGGQ+QR IA + + A
Sbjct: 116 WRKEDEEAVTKAMQATGI------------THLADQSVDTLSGGQRQRAWIAMVLAQETA 163
Query: 904 ILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLS-TIRGVDCIGVVQDGRIV 960
I+LLDE T+ LD + L E L L R G T V H L+ R + +++G+IV
Sbjct: 164 IMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV 223
Query: 961 EQGSHSELVS 970
QG+ E+V+
Sbjct: 224 AQGAPKEIVT 233
|
Length = 265 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 7e-17
Identities = 73/254 (28%), Positives = 122/254 (48%), Gaps = 46/254 (18%)
Query: 100 IEFKNVTFSY---PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 156
++ ++T+ Y P R F + G+ VA++G SG+GKST+++LI F P +
Sbjct: 2 LKLTDITWLYHHLPMR--------FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS 53
Query: 157 GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG-KP-----EATMAEVE 209
G + L+ D T R + ++ QE LF+ T+ +NI G P A ++
Sbjct: 54 GSLTLNGQDHTTTPPS--RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLH 111
Query: 210 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 269
A A + LP QLSGGQ+QR+A+AR +++ ILLLDE SAL
Sbjct: 112 AIARQMGIEDLLARLPG-----------QLSGGQRQRVALARCLVREQPILLLDEPFSAL 160
Query: 270 DAG---------SESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTH 320
D S+ + L LMV ++ A R++ R++ V+ G++ G
Sbjct: 161 DPALRQEMLTLVSQVCQERQLTLLMVSH-SLEDAARIAP-RSL----VVADGRIAWDGPT 214
Query: 321 EELIAKAGAYASLI 334
+EL++ + ++L+
Sbjct: 215 DELLSGKASASALL 228
|
Length = 232 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 8e-17
Identities = 62/233 (26%), Positives = 109/233 (46%), Gaps = 26/233 (11%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+EF+NV+ Y ++ +D S G +A+VG +G+GKST++ L+ P +G V
Sbjct: 322 LEFENVSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 160 LLDNVDIKTLQLRWLR-DQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAH 218
+ +T+++ + + L + T+LE + G P+ EV A
Sbjct: 380 KVG----ETVKIGYFDQHRDELDPDK------TVLEELSEGFPDGDEQEVRAYL-----G 424
Query: 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 278
F + LSGG+K R+ +A+ +L+ P +LLLDE T+ LD S ++
Sbjct: 425 RF--GFT---GEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALE 479
Query: 279 EALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVET-GTHEELIAKAGAY 330
EAL G T ++V+H + V T + + +V E G +E+ + +
Sbjct: 480 EALLDFE-G-TVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYEDYLEQKKER 530
|
Length = 530 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 8e-17
Identities = 66/247 (26%), Positives = 101/247 (40%), Gaps = 48/247 (19%)
Query: 754 YPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR 813
+ KD + I G+ ++G +G+GKS+++ LI Y PT+GKV + GK +
Sbjct: 34 GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK-VA- 91
Query: 814 LNLKSLRLKIGLVQQEPALFAASI-FDNIAYGKE---------GATEAEVVEAARAANVH 863
L FD G+E G T E+ E + +
Sbjct: 92 -----------------PLIELGAGFDPELTGRENIYLRGLILGLTRKEIDE--KVDEII 132
Query: 864 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 923
F + L + PV S G R+A + A P ILLLDE + DA +
Sbjct: 133 EF-AELGDFIDQPVK----TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAA---FQE 184
Query: 924 EALERLM----RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYSR 978
+ LERL + +T VLV+H L I+ D ++ G+I +GS E++ AY
Sbjct: 185 KCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVI----PAYEE 240
Query: 979 LLQLQHH 985
L +
Sbjct: 241 DLADRLS 247
|
Length = 249 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 1e-16
Identities = 67/228 (29%), Positives = 101/228 (44%), Gaps = 34/228 (14%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKSS---VIALIERFYDPTAGKVMIDGKDIRRLNLK--- 817
K NL ++ G+ A++G +GSGKS+ I + Y+ T G+++ DG+DI L L
Sbjct: 21 KGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFDGEDI--LELSPDE 77
Query: 818 SLRLKIGLVQQEPALFA---ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYK 874
R I L Q P S F A + E F+ L +
Sbjct: 78 RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPE---------FIKELKEKAE 128
Query: 875 TPVG------ERGVQ--LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEAL 926
+G ER V SGG+K+R I + +L P + +LDE S LD ++ ++ E +
Sbjct: 129 L-LGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGI 187
Query: 927 ERLM-RGRTTVLVAH--RLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971
L GR +++ H RL D + V+ DGRIV+ G EL
Sbjct: 188 NALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGD-PELAEE 234
|
Length = 251 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 1e-16
Identities = 63/217 (29%), Positives = 93/217 (42%), Gaps = 23/217 (10%)
Query: 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF--YDPNAGHVLLDNVDIKTLQL--R 172
I + ++ G+ A++G +GSGKST+ I Y+ G +L D DI L R
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78
Query: 173 WLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPN-----G 227
R I L Q P + L A FI L G
Sbjct: 79 -ARAGIFLAFQYPVEIPGVTNSDFL-----RAAMNARRGARGILPE-FIKELKEKAELLG 131
Query: 228 YSTQVGERGVQ--LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM 285
+ ER V SGG+K+R I + +L PK+ +LDE S LD + IV E ++ L
Sbjct: 132 LDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR 191
Query: 286 -VGRTTVVVAHR---LSTIRNVDTVAVIQQGQVVETG 318
GR +++ H L I+ D V V+ G++V++G
Sbjct: 192 EEGRGVLIITHYQRLLDYIK-PDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 1e-16
Identities = 58/243 (23%), Positives = 111/243 (45%), Gaps = 33/243 (13%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
I +N+++S R + S+ G+ +A++G +G+GKST++ + P++G V
Sbjct: 2 IRAENLSYSLAGRR---LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPAL-FATTILENILYG--------KPEATMAEVEA 210
L+ V + + L ++ Q +L F T+ E + G +PE
Sbjct: 59 TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ 118
Query: 211 AASAANAHSFITLLPNGYSTQVGERGVQ-LSGGQKQRIAIARAMLK------NPKILLLD 263
A +A + R + LSGG++QR+ +AR + + + + L LD
Sbjct: 119 ALAATDLSGL------------AGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLD 166
Query: 264 EATSALD-AGSESIVQEALDRLMVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHE 321
E TSALD A ++ A G + V H L+ + D + ++ QG+V+ +G+ +
Sbjct: 167 EPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQ 226
Query: 322 ELI 324
+++
Sbjct: 227 DVL 229
|
Length = 259 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 1e-16
Identities = 55/210 (26%), Positives = 108/210 (51%), Gaps = 19/210 (9%)
Query: 127 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPA 186
G+T+A++G +GSGKST+ ++ +P +G +L+++ + + +I ++ Q+P
Sbjct: 38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPN 97
Query: 187 ------LFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240
L IL+ L + + + + LLP+ + L+
Sbjct: 98 TSLNPRLRIGQILDFPL--RLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPH----MLA 151
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSES----IVQEALDRLMVGRTTVVVAHR 296
GQKQR+A+ARA++ PKI++ DEA ++LD S ++ E ++ G + + V
Sbjct: 152 PGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQ--GISYIYVTQH 209
Query: 297 LSTIRNV-DTVAVIQQGQVVETGTHEELIA 325
+ I+++ D V V+ +G+VVE G+ +++A
Sbjct: 210 IGMIKHISDQVLVMHEGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 2e-16
Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 24/230 (10%)
Query: 756 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 815
D V +L +R G LVG +G+GK++++ I PTAG V++ G D+ L+
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 816 LKSLRLKIGLVQQEPAL-FAASIFDNIAYGK-------EGATEAE---VVEAARAANVHG 864
++ ++ V Q+ +L F + + G+ + TE + V A V
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ 131
Query: 865 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 924
F PV LSGG++QR+ +ARA+ + +LLLDE T++LD + E
Sbjct: 132 FAD-------RPVTS----LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLE 180
Query: 925 ALERLMR-GRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
+ RL+ G+T V H L R D + ++ DGR+ G +++++
Sbjct: 181 LVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTAD 230
|
Length = 402 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 2e-16
Identities = 65/229 (28%), Positives = 115/229 (50%), Gaps = 14/229 (6%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
I+ V+ SY + + S +G+ ++G +G+GKST+ +I P+AG +
Sbjct: 42 IDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPAL-FATTILENIL-YGKPEATMAEVEAAASAANA 217
+ V + + R R +IG+V Q L T+ EN+L +G+ M+ E A +
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGR-YFGMSTREIEAVIPSL 156
Query: 218 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 277
F L ++ R LSGG K+R+ +ARA++ +P++L+LDE T+ LD + ++
Sbjct: 157 LEFARL-----ESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 211
Query: 278 QEALDRLMV-GRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEELI 324
E L L+ G+T ++ H + R D + V++ G+ + G LI
Sbjct: 212 WERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260
|
Length = 340 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 3e-16
Identities = 50/206 (24%), Positives = 87/206 (42%), Gaps = 20/206 (9%)
Query: 738 VETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFY 797
+ I L ++ P + + N +R G+ + G SG+GK+S++ + +
Sbjct: 386 DDNADHGITLENLSLRTPDGQ--TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW 443
Query: 798 DPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAY--GKEGATEAEVVE 855
+G++ + L + Q P L ++ + + Y ++AE+V
Sbjct: 444 PWGSGRI------SMPADSALL-----FLPQRPYLPQGTLREALCYPNAAPDFSDAELVA 492
Query: 856 AARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 915
+ L LSGG++QR+A AR +L P + LDEATSALD
Sbjct: 493 VLHKVGLGDLAERLDE-----EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547
Query: 916 AESECVLQEALERLMRGRTTVLVAHR 941
E+E L + L+ + T + V HR
Sbjct: 548 EETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 3e-16
Identities = 75/251 (29%), Positives = 122/251 (48%), Gaps = 51/251 (20%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSV---IALIERFYDPTA 801
++L+ V +Y + V+ K +L + G+ LVG SG GKS++ +A +ER T+
Sbjct: 4 LKLQAVRKSYDGKTQVI--KGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI---TS 58
Query: 802 GKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG------KEGATEAEVV 854
G++ I G+ + L R I +V Q AL+ S+ +N+AYG + E V
Sbjct: 59 GEIWIGGRVVNELEPAD-R-DIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVA 116
Query: 855 EAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 914
EAAR + + P +LSGGQ+QR+A+ RA+++ PA+ L DE S L
Sbjct: 117 EAARILELEPLLDRKPR-----------ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNL 165
Query: 915 DAESECVLQEALERLMR--GRTTVLV----------AHRLSTIRGVDCIGVVQDGRIVEQ 962
DA+ ++ ++RL R T++ V A R+ VV +G + EQ
Sbjct: 166 DAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRV----------VVMNGGVAEQ 215
Query: 963 -GSHSELVSRP 972
G+ E+ +P
Sbjct: 216 IGTPVEVYEKP 226
|
Length = 356 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 4e-16
Identities = 66/262 (25%), Positives = 124/262 (47%), Gaps = 11/262 (4%)
Query: 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 157
G ++ + +T Y ++ +D S G+ V ++G +GSGKST++S + R G
Sbjct: 1216 GQMDVQGLTAKYTEAGRAVL-QDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-G 1273
Query: 158 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMA--EVEAAASAA 215
+ +D V ++ L+ R G++ Q+ +F+ T +N+ P + E+ A
Sbjct: 1274 EIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNL---DPYEQWSDEEIWKVAEEV 1330
Query: 216 NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 275
S I P+ + + G LS G KQ + +AR++L KILLLDE ++ LD +
Sbjct: 1331 GLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQ 1390
Query: 276 IVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 335
I+++ L + T ++ HR+ + VI+ V + + ++L+ + + +
Sbjct: 1391 IIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMS 1450
Query: 336 FQEMVRNRDFANPSTRRSRSTR 357
+ R + F P RR+ S R
Sbjct: 1451 AAD--RLKLF--PLHRRNSSKR 1468
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 4e-16
Identities = 62/230 (26%), Positives = 99/230 (43%), Gaps = 46/230 (20%)
Query: 118 FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL------ 171
RD S G+ + +VG SGSGKST++ + P+ G L+L
Sbjct: 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA 78
Query: 172 ---RWLRDQIGLVNQEPA-------LFATTILENIL------YGKPEAT----MAEVEAA 211
R +R + G V+Q P I E ++ YG AT + EVE
Sbjct: 79 ERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEID 138
Query: 212 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271
T++ + SGG +QR+ IAR ++ P+++ +DE T LD
Sbjct: 139 P-----------------TRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV 181
Query: 272 GSESIVQEALDRLMV--GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 318
++ + + L L+ G ++V H L R + + V+QQG+VVE+G
Sbjct: 182 SVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 5e-16
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 32/238 (13%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
I+L V +Y + V + + +G+ L+G +G+GKS++ +I P AGK+
Sbjct: 42 IDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDN-----------IAYGKEGATEAEV 853
+ G + + R +IG+V Q FDN + +G+
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQ---------FDNLDLEFTVRENLLVFGRYFGMSTRE 148
Query: 854 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 913
+EA + + + L + V + LSGG K+R+ +ARA++ +P +L+LDE T+
Sbjct: 149 IEAVIPSLLE--FARLESKADARVSD----LSGGMKRRLTLARALINDPQLLILDEPTTG 202
Query: 914 LDAESECVLQEALERLM-RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELV 969
LD + ++ E L L+ RG+T +L H + R D + V++ GR + +G L+
Sbjct: 203 LDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260
|
Length = 340 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 6e-16
Identities = 67/246 (27%), Positives = 101/246 (41%), Gaps = 44/246 (17%)
Query: 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL--- 819
+D + + G+ +VG SGSGKS+++ + P G + L L L
Sbjct: 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA 78
Query: 820 ------RLKIGLVQQEPA---LFAASIFDNIA----------YGKEGATEA---EVVEAA 857
R + G V Q P S NI YG AT E VE
Sbjct: 79 ERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEID 138
Query: 858 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 917
+ LP A+ SGG +QR+ IAR ++ P ++ +DE T LD
Sbjct: 139 PTR-----IDDLPRAF-----------SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS 182
Query: 918 SECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDG 974
+ L + L L+R G ++V H L R + + V+Q GR+VE G +++ P
Sbjct: 183 VQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQH 242
Query: 975 AYSRLL 980
Y++LL
Sbjct: 243 PYTQLL 248
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 6e-16
Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 21/180 (11%)
Query: 757 RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL 816
R V+F + + AG++ L G +GSGK++++ LI P AG + +DG DI ++
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDV 71
Query: 817 KSLRLKIG-LVQQEPALFAASIFDNIAYGKE--GATEAEVVEAARAANVHGFVSALPNAY 873
+G +PAL ++ +N+ + G E ++ A A + ++ LP Y
Sbjct: 72 AEACHYLGHRNAMKPAL---TVAENLEFWAAFLGGEELDIAAALEAVGLAP-LAHLPFGY 127
Query: 874 KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR 933
LS GQK+R+A+AR ++ N I +LDE T+ALDA + L+R
Sbjct: 128 ----------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAA----VALFAELIRAH 173
|
Length = 207 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 7e-16
Identities = 65/238 (27%), Positives = 113/238 (47%), Gaps = 32/238 (13%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
I+L V +Y D VV D + I G+ L+G +G+GKS++ ++ P GK+
Sbjct: 5 IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI-----------AYGKEGATEAEV 853
+ G+ + + R+ IG+V Q FDN+ +G+
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQ---------FDNLDPEFTVRENLLVFGRYFGMSTRE 111
Query: 854 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 913
+EA + + + L + V LSGG K+R+ +ARA++ +P +L+LDE T+
Sbjct: 112 IEAVIPSLLE--FARLESKADVRVA----LLSGGMKRRLTLARALINDPQLLILDEPTTG 165
Query: 914 LDAESECVLQEALERLM-RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELV 969
LD + ++ E L L+ RG+T +L H + R D + V++ GR + +G L+
Sbjct: 166 LDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALI 223
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 7e-16
Identities = 71/245 (28%), Positives = 113/245 (46%), Gaps = 35/245 (14%)
Query: 757 RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN- 815
V + +L +++G++ AL+G SG GKS++ L+ P+ G V G+ + +LN
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81
Query: 816 --LKSLRLKIGLVQQEPALFAA-----SIFDNIAYGKEGATEAEVVEAARAANVHGFVSA 868
K+ R I +V Q+ +A ++ + I + +A R A S
Sbjct: 82 AQRKAFRRDIQMVFQDS--ISAVNPRKTVREIIREPLRHLLSLD--KAERLARA----SE 133
Query: 869 LPNAYKTPVG---ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ-- 923
+ A +R QLSGGQ QR+ +ARA+ P +L+LDEA S LD VLQ
Sbjct: 134 MLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL----VLQAG 189
Query: 924 --EALERLMRGRTT--VLVAHRLSTI-RGVDCIGVVQDGRIVEQG--SHSELVSRPDGAY 976
L++L + T + + H L + R + V+ +G+IVE S P G
Sbjct: 190 VIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLTFSSPAG-- 247
Query: 977 SRLLQ 981
R+LQ
Sbjct: 248 -RVLQ 251
|
Length = 268 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 78.8 bits (194), Expect = 8e-16
Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 12/228 (5%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
I+ V+ SY D ++ D S G+ ++G +G+GKST+ ++ P+ G +
Sbjct: 5 IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPAL-FATTILENILYGKPEATMAEVEAAASAANAH 218
+ + + + R R IG+V Q L T+ EN+L M+ E A +
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLL 120
Query: 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 278
F L ++ R LSGG K+R+ +ARA++ +P++L+LDE T+ LD + ++
Sbjct: 121 EFARL-----ESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIW 175
Query: 279 EALDRLMV-GRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEELI 324
E L L+ G+T ++ H + R D + V++ G+ + G LI
Sbjct: 176 ERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALI 223
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 8e-16
Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 15/173 (8%)
Query: 103 KNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN---AGHV 159
KNV+ P + + + G+ V ++G SG GKST++S + G +
Sbjct: 6 KNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGEL 62
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAH 218
L+ + L + QIG++ Q+ LF ++ +N+L+ P A +AANA
Sbjct: 63 WLNEQRLDMLPAA--QRQIGILFQDALLFPHLSVGQNLLFALPATLKGN--ARRNAANA- 117
Query: 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271
L +G + LSGGQ+ R+A+ RA+L PK LLLDE S LD
Sbjct: 118 ---ALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 9e-16
Identities = 65/213 (30%), Positives = 103/213 (48%), Gaps = 14/213 (6%)
Query: 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL---QLRW 173
+ + S+ +G+TVA++G SG GKST+ L+ P+ G+V + L Q +
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86
Query: 174 LRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEAAASAANAHSFITL--LPNGYS 229
R I +V Q+ A+ + I+ +P + ++ A A A + L +
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREII-REPLRHLLSLDKAERLARASEMLRAVDLDDSVL 145
Query: 230 TQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VG 287
+ R QLSGGQ QR+ +ARA+ PK+L+LDEA S LD ++ V L +L G
Sbjct: 146 DK---RPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFG 202
Query: 288 RTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGT 319
+ + H L + R V V+ GQ+VET
Sbjct: 203 TACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235
|
Length = 268 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 1e-15
Identities = 61/182 (33%), Positives = 95/182 (52%), Gaps = 18/182 (9%)
Query: 128 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WLRDQIGLVNQE 184
G+ + G SG+GKST++ LI P+AG + DI L+ R +LR QIG++ Q+
Sbjct: 28 GEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQD 87
Query: 185 PALFAT-TILENILYGKPEATMAEVEAAASAANAHSFIT--LLPNGYSTQVGERGVQLSG 241
L T+ +N+ + + A AS + ++ L G + +QLSG
Sbjct: 88 HHLLMDRTVYDNV-------AIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSG 140
Query: 242 GQKQRIAIARAMLKNPKILLLDEATSALD-AGSESIVQ--EALDRLMVGRTTVVVAHRLS 298
G++QR+ IARA++ P +LL DE T LD A SE I++ E +R VG T ++ H +
Sbjct: 141 GEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR--VGVTVLMATHDIG 198
Query: 299 TI 300
I
Sbjct: 199 LI 200
|
Length = 222 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 1e-15
Identities = 62/222 (27%), Positives = 115/222 (51%), Gaps = 34/222 (15%)
Query: 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL------QLRW 173
DF++ AG+ A++GG+G+GKST++ +I P++G + + L QL
Sbjct: 31 DFTLH--AGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQL-- 86
Query: 174 LRDQIGLVNQEPALFAT-TILENILYG--KPEATMAEVEAAASAANAHSFITLLPNGYST 230
I LV QEP LF ++ ENIL+G K +A+M +++ +A + L + S
Sbjct: 87 ---GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ--LDLDSSAGSL 141
Query: 231 QVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-SESIVQEALDRLMVGRT 289
+V +R Q + I R ++++ +IL+LDE T++L +E + + L G
Sbjct: 142 EVADR---------QIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVG 192
Query: 290 TVVVAHRLSTIRNV-DTVAVIQQGQVVETG-----THEELIA 325
V ++H+L IR + D ++V++ G + +G + +++I
Sbjct: 193 IVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDIIQ 234
|
Length = 510 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 1e-15
Identities = 61/193 (31%), Positives = 95/193 (49%), Gaps = 20/193 (10%)
Query: 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW--- 173
+ + S G+ +A+VG SGSGKST++ L+ P +G V+ + + L
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 174 LRDQ-IGLVNQEPALFAT-TILENI----LYGKPEATMAEVEAAASAANAHSFITLLPNG 227
LR+Q +G + Q L T LEN+ L GK + N+ + L G
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK---------KKPAEINSRALEMLAAVG 134
Query: 228 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG 287
+ R +LSGG++QR+AIARA++ NP+++L DE T LDA + + + L L
Sbjct: 135 LEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL 194
Query: 288 RTT--VVVAHRLS 298
+ T +VV H L
Sbjct: 195 QGTAFLVVTHDLQ 207
|
Length = 233 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 1e-15
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 33/195 (16%)
Query: 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL----DNVDI------ 166
+ ++ S+ AG+ VA+ G SG+GKST++ + Y P++G +L+ VD+
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 167 KTLQLRWLRDQIGLVNQ----EPALFATTILENILYGKPEATMAEVEAAASAANAHSFIT 222
+ L++R R IG V+Q P + A ++ +P V A+ A A +
Sbjct: 83 EVLEVR--RKTIGYVSQFLRVIPRVSALEVVA-----EPLLERG-VPREAARARARELLA 134
Query: 223 LLPNGYSTQVGERGVQL-----SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 277
L + ER L SGG++QR+ IAR + + ILLLDE T++LDA + +V
Sbjct: 135 RL------NIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVV 188
Query: 278 QEALDRLMVGRTTVV 292
E + ++
Sbjct: 189 VELIAEAKARGAALI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 71/249 (28%), Positives = 108/249 (43%), Gaps = 57/249 (22%)
Query: 103 KNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD 162
+ +T Y R RD S G+ + +VG SGSGK+T+++ + P+AG V
Sbjct: 10 RGLTKLYGPR---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYR 66
Query: 163 N-----VDIKTL---QLRWL-RDQIGLVNQEPA---LFATTILENI----------LYGK 200
D+ L + R L R + G V+Q P + NI YG
Sbjct: 67 MRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGD 126
Query: 201 PEAT----MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256
AT + VE A+ I LP +S GG +QR+ IAR ++ +
Sbjct: 127 IRATAGDWLERVEIDAAR------IDDLPTTFS-----------GGMQQRLQIARNLVTH 169
Query: 257 PKILLLDEATSALDAGSESIVQEALDRLMVGRTT------VVVAHRLSTIRNV-DTVAVI 309
P+++ +DE T LD VQ L L+ G V+V H L+ R + + V+
Sbjct: 170 PRLVFMDEPTGGLDVS----VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVM 225
Query: 310 QQGQVVETG 318
+QG+VVE+G
Sbjct: 226 KQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-15
Identities = 56/240 (23%), Positives = 102/240 (42%), Gaps = 36/240 (15%)
Query: 99 NIEFKNVTFSYPS-RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA- 156
+ + +V + I D S+ +G+ +A++G SGSGK+T++ I +
Sbjct: 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT 62
Query: 157 --GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILY-----------GKPE 202
G +L + K Q + + V Q+ L T+ E + Y
Sbjct: 63 TSGQILFNGQPRKPDQFQ---KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIR 119
Query: 203 ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQ-LSGGQKQRIAIARAMLKNPKILL 261
E A T++G V+ +SGG+++R++IA +L +PK+L+
Sbjct: 120 KKRVEDVLLRDLAL-------------TRIGGNLVKGISGGERRRVSIAVQLLWDPKVLI 166
Query: 262 LDEATSALDAGSESIVQEALDRLMVGRTTVVVA-H--RLSTIRNVDTVAVIQQGQVVETG 318
LDE TS LD+ + + L +L V++ H R R D + ++ G++V +G
Sbjct: 167 LDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 2e-15
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 27/227 (11%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
++ ++T +Y + + D S+ G+ +G +G+GK+T + +I P++G +
Sbjct: 1 LKTNDLTKTYGKKRVL---DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI 57
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENI-----LYGKPEATMAEVEAAAS 213
D + R IG + + P + T EN+ L G + + EV
Sbjct: 58 TFDGKSYQKNIEALRR--IGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEV----- 110
Query: 214 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 273
L G ++ S G KQR+ IA A+L NP +L+LDE T+ LD
Sbjct: 111 ---------LDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDG 161
Query: 274 ESIVQEALDRLM-VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 318
++E + L G T ++ +H LS I+ V D + +I +G+++E G
Sbjct: 162 IKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 2e-15
Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 52/239 (21%)
Query: 120 DFSIFFPAGKTVAVVGGSGSGKS-TVVSLIERFYDPN----------AGHVLLDNVDIKT 168
D S+ AG+T+A+VG SGSGKS T +S++ P G LL + +T
Sbjct: 27 DVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLL-HASEQT 85
Query: 169 LQLRWLR-DQIGLVNQEPALFATTILENILYGKPEATMAEV---------EAAASAANAH 218
L R +R ++I ++ QEP + + L + E + EV EAA
Sbjct: 86 L--RGVRGNKIAMIFQEP-MVSLNPLHTL-----EKQLYEVLSLHRGMRREAARGEI--- 134
Query: 219 SFITLLPNGYSTQVGERGV---------QLSGGQKQRIAIARAMLKNPKILLLDEATSAL 269
+ L +VG R QLSGG++QR+ IA A+L P++L+ DE T+AL
Sbjct: 135 --LNCL-----DRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTAL 187
Query: 270 DAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIA 325
D ++ + + L L + + + H LS +R + D VAV+Q G+ VE L +
Sbjct: 188 DVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFS 246
|
Length = 529 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 67/259 (25%), Positives = 121/259 (46%), Gaps = 43/259 (16%)
Query: 100 IEFKNVTFSYPSR-PDVI-IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 157
I+ KN+ + + P + + S+ G+ +A++G +GSGK+T + + P+ G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 158 HVLLDNVDIKTL------------------------QLRWLRDQIGLVNQ--EPALFATT 191
+ D K +++ +R ++G+V Q E LF T
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 192 ILENILYGKPEATMAEVEAAASAANAHSFITL--LPNGYSTQVGERG-VQLSGGQKQRIA 248
I ++I++G +++ EA AA +I L L Y +R +LSGGQK+R+A
Sbjct: 123 IEKDIIFGPVSMGVSKEEAKKRAAK---YIELVGLDESYL----QRSPFELSGGQKRRVA 175
Query: 249 IARAMLKNPKILLLDEATSALD-AGSESIVQEALDRL-MVGRTTVVVAHRL-STIRNVDT 305
+A + P L+ DE T+ LD G + I+ E D L G+T ++V H L + +
Sbjct: 176 LAGILAMEPDFLVFDEPTAGLDPQGVKEIL-EIFDNLNKQGKTIILVTHDLDNVLEWTKR 234
Query: 306 VAVIQQGQVVETG-THEEL 323
+ G++++ G T++ L
Sbjct: 235 TIFFKDGKIIKDGDTYDIL 253
|
Length = 305 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 2e-15
Identities = 55/214 (25%), Positives = 101/214 (47%), Gaps = 18/214 (8%)
Query: 770 IRAGQSQALVGASGSGKSSVIALIERFYDPT----AGKVMIDGKDIRRLNLKSLRLKIGL 825
+ G+ A++G+SG+GK++++ + F P +G V+++G ++ K +R
Sbjct: 48 AKPGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNG---MPIDAKEMRAISAY 103
Query: 826 VQQE----PALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERG 881
VQQ+ P L A+ + + + R V + L T +G G
Sbjct: 104 VQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALG-LRKCANTRIGVPG 162
Query: 882 VQ--LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL-MRGRTTVLV 938
LSGG+++R+A A +L +P +L DE TS LD+ + + L+ L +G+T +
Sbjct: 163 RVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICT 222
Query: 939 AHRLST--IRGVDCIGVVQDGRIVEQGSHSELVS 970
H+ S+ D I ++ +GR+ GS + V
Sbjct: 223 IHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (189), Expect = 2e-15
Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 16/228 (7%)
Query: 107 FSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN--V 164
F Y P + + ++ F +VG +G GKST+ + P G VL +
Sbjct: 9 FRYQDEP---VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL 65
Query: 165 DIKTLQLRWLRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEAAASAANAHSFIT 222
D L LR Q+ V Q+P +F T I +I + + E E A + +
Sbjct: 66 DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVD 125
Query: 223 LLPNGYSTQVGERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL 281
+ + +Q LS GQK+R+AIA A++ + LLLDE T+ LD + + +
Sbjct: 126 ------AQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAII 179
Query: 282 DRLMV-GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAKA 327
R++ G ++ +H + I + D V V++QGQ++ G E+ A
Sbjct: 180 RRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACT 227
|
Length = 271 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 3e-15
Identities = 67/234 (28%), Positives = 114/234 (48%), Gaps = 25/234 (10%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IE +N+ Y D R S G+ ++G +G+GK+T + ++ P +G
Sbjct: 1 IEVENLVKKYG---DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA 57
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPAL-FATTILENI-----LYGKPEATMAEVEAAAS 213
+ D+ + R +R +IG+V Q+ ++ T EN+ LYG P A E
Sbjct: 58 TVAGHDV-VREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-----ERRER 111
Query: 214 AANAHSFITLLPNGYSTQVGERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272
F+ LL + +R V+ SGG ++R+ IAR+++ P++L LDE T LD
Sbjct: 112 IDELLDFVGLL------EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQ 165
Query: 273 SESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
+ + V E +++L G T ++ H + + D VA+I G+++ GT EEL
Sbjct: 166 TRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 3e-15
Identities = 57/218 (26%), Positives = 89/218 (40%), Gaps = 40/218 (18%)
Query: 765 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT---AGKVMIDGKDIRRLNLKSLRL 821
+ N I G+ L+G SG GKS++++ + G++ ++ + + L + +
Sbjct: 20 NVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD--MLPAAQR 77
Query: 822 KIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGER 880
+IG++ Q+ LF S+ N+ + A A + AR NA G
Sbjct: 78 QIGILFQDALLFPHLSVGQNLLF----ALPATLKGNARRNAA--------NAALERSGLD 125
Query: 881 GV------QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE-----SECVLQEALERL 929
G LSGGQ+ R+A+ RA+L P LLLDE S LD + V E
Sbjct: 126 GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRA-- 183
Query: 930 MRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 967
G TV V H D V R++E +
Sbjct: 184 -AGIPTVQVTH--------DLQDVPAGSRVIEMAQWEQ 212
|
Length = 213 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 3e-15
Identities = 64/267 (23%), Positives = 119/267 (44%), Gaps = 48/267 (17%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF--YDPNAG 157
IE KN+T + + ++ S G+ + ++G SG+GKS ++ ++ Y+P +G
Sbjct: 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG 57
Query: 158 HVL---------------------------------LDNVDIKTLQLRWLRDQIGLVNQE 184
++ +D ++ R +R +I ++ Q
Sbjct: 58 RIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQR 117
Query: 185 P-ALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG 242
AL+ T+L+N+L E EA A + + L S ++ LSGG
Sbjct: 118 TFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL-----SHRITHIARDLSGG 172
Query: 243 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTI 300
+KQR+ +AR + K P + L DE T LD + +V AL+ + G + V+ +H I
Sbjct: 173 EKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232
Query: 301 RNVDTVAV-IQQGQVVETGTHEELIAK 326
++ A+ ++ G++ E GT +E++A
Sbjct: 233 EDLSDKAIWLENGEIKEEGTPDEVVAV 259
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 80.4 bits (198), Expect = 3e-15
Identities = 71/253 (28%), Positives = 120/253 (47%), Gaps = 30/253 (11%)
Query: 121 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
+I F + A +G +G+GK+T +S++ P +G VL+ DI+T L +R +G+
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGM 1007
Query: 181 VNQEPALFA-TTILENILY-----GKP-EATMAEVEAAASAANAHSFITLLPNGYSTQVG 233
Q LF T+ E+IL+ G+ E E+EA L G +
Sbjct: 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEA-----------MLEDTGLHHKRN 1056
Query: 234 ERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVV 293
E LSGG ++++++A A + + K+++LDE TS +D S + + L + GRT ++
Sbjct: 1057 EEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMS 1116
Query: 294 AHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK----AGAYASLIR----FQEMVRNRD 344
H + + D +A+I QG++ +GT L K G Y +L+R Q +
Sbjct: 1117 THHMDEADLLGDRIAIISQGRLYCSGT--PLFLKNCFGTGFYLTLVRKMKNIQSQRGGCE 1174
Query: 345 FANPSTRRSRSTR 357
T + STR
Sbjct: 1175 GTCSCTSKGFSTR 1187
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 4e-15
Identities = 59/223 (26%), Positives = 93/223 (41%), Gaps = 49/223 (21%)
Query: 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF--YDPNAGHVLLDNVDIKTL--QLR 172
I + ++ G+ A++G +GSGKST+ I Y+ G +L DI L + R
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74
Query: 173 WLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQV 232
R I L Q P P A+ F+
Sbjct: 75 -ARLGIFLAFQYPPEI------------PGVKNAD------------FL----------- 98
Query: 233 GERGVQ--LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRT 289
R V SGG+K+R I + +L P + +LDE S LD + +V E +++L G++
Sbjct: 99 --RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS 156
Query: 290 TVVVAH--RLSTIRNVDTVAVIQQGQVVETGTHE--ELIAKAG 328
+++ H RL D V V+ G++V++G E I K G
Sbjct: 157 VLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELALEIEKKG 199
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 5e-15
Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 42/235 (17%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI---------- 811
+ ++ I G+ A++G +GSGK++ I + P G + KD
Sbjct: 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81
Query: 812 -------------RRL-NLKSLRLKIGLVQQ--EPALFAASIFDNIAYG--KEGATEAEV 853
+++ +K +R ++G+V Q E LF +I +I +G G ++ E
Sbjct: 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEA 141
Query: 854 VEAARAANVHGFVSALPNAY--KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT 911
+ RAA V L +Y ++P LSGGQK+R+A+A + P L+ DE T
Sbjct: 142 KK--RAAKYIELV-GLDESYLQRSPFE-----LSGGQKRRVALAGILAMEPDFLVFDEPT 193
Query: 912 SALDAESECVLQEALERL-MRGRTTVLVAHRLSTI--RGVDCIGVVQDGRIVEQG 963
+ LD + + E + L +G+T +LV H L + I +DG+I++ G
Sbjct: 194 AGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI-FFKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 5e-15
Identities = 66/247 (26%), Positives = 121/247 (48%), Gaps = 33/247 (13%)
Query: 100 IEFKNV--TFSYPS----RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD 153
+E +N+ TF Y + R V + S G+T+A++G +GSGKST+ ++ +
Sbjct: 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 154 PNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALF------ATTILENILYGKPEATMAE 207
P +G +L+D+ + + +I ++ Q+P+ + IL+ L + +
Sbjct: 65 PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQ 124
Query: 208 VEAAASAANAHSFITLLPN--GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 265
E + LLP+ Y + L+ GQKQR+ +ARA++ PK+++ DEA
Sbjct: 125 REKQIIETLRQ--VGLLPDHASYYPHM------LAPGQKQRLGLARALILRPKVIIADEA 176
Query: 266 TSALDAGSESIVQEALDRLMV------GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 318
++LD S L LM+ G + + V L ++++ D V V+ QG+VVE G
Sbjct: 177 LASLDMSMRS----QLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232
Query: 319 THEELIA 325
+ +++A
Sbjct: 233 STADVLA 239
|
Length = 267 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 6e-15
Identities = 57/217 (26%), Positives = 102/217 (47%), Gaps = 21/217 (9%)
Query: 766 FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-RLKIG 824
+ +RAG+ LVG +G+GKS+++A + +G + G+ + + L R +
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76
Query: 825 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQL 884
L QQ+ FA ++ + + T E++ A L + QL
Sbjct: 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLN--DVAGALALDDKLGRSTN--------QL 126
Query: 885 SGGQKQRIAIARAVLK-----NPA--ILLLDEATSALDAESECVLQEALERLMR-GRTTV 936
SGG+ QR+ +A VL+ NPA +LLLDE ++LD + L L L + G V
Sbjct: 127 SGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIV 186
Query: 937 LVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
+ +H L+ T+R +++ G+++ G E+++ P
Sbjct: 187 MSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPP 223
|
Length = 248 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 8e-15
Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 20/216 (9%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 821
+ +L +R G+ A++G +G+GKS+++ + P +G+V ++G + + L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 822 KIG-LVQQEPALFAASIFDNIAYGK----EGATEAEVVEAARAANVHGFVSALPNAYKTP 876
L Q F ++ + + G+ G E A A +S L
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYR- 134
Query: 877 VGERGVQLSGGQKQRIAIAR------AVLKNPAILLLDEATSALD-AESECVLQEALERL 929
LSGG++QR+ +AR + + L LDE TSALD A L+ A +
Sbjct: 135 ------TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLA 188
Query: 930 MRGRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGS 964
G + V H L+ + D I ++ GR++ GS
Sbjct: 189 REGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGS 224
|
Length = 259 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 9e-15
Identities = 58/175 (33%), Positives = 90/175 (51%), Gaps = 19/175 (10%)
Query: 128 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG----LVNQ 183
G+ ++++G SG GKST+++LI P +G V+L+ I + G +V Q
Sbjct: 11 GEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI---------TEPGPDRMVVFQ 61
Query: 184 EPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG 242
+L T+ ENI + + ++ + A I L+ G + +R QLSGG
Sbjct: 62 NYSLLPWLTVRENI-ALAVDRVLPDLSKSERRAIVEEHIALV--GLTEAADKRPGQLSGG 118
Query: 243 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAH 295
KQR+AIARA+ PK+LLLDE ALDA + +QE L ++ T ++V H
Sbjct: 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTH 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 9e-15
Identities = 64/287 (22%), Positives = 112/287 (39%), Gaps = 40/287 (13%)
Query: 25 AGVFIRN-----GVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAG---YKLMEI 76
A + G+ AF + S SL N A + +A + +
Sbjct: 312 APRYFSGQITFGGLMQAVGAFGQVHS------SLSWFIDNYDAIADWRATLLRLAEFRQA 365
Query: 77 IK--QKPSIIQDPTNGRC--LDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVA 132
++ Q + T R D + I +N++ P ++ + + G+ +
Sbjct: 366 LEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG-QTLL-SELNFEVRPGERLL 423
Query: 133 VVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL-VNQEPALFATT 191
+ G SG+GK++++ + + +G + + D L + Q P L T
Sbjct: 424 ITGESGAGKTSLLRALAGLWPWGSG----------RISMP--ADSALLFLPQRPYLPQGT 471
Query: 192 ILENILY--GKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249
+ E + Y P+ + AE+ A L + LSGG++QR+A
Sbjct: 472 LREALCYPNAAPDFSDAELVAVLHKVGLGDLAERL-----DEEDRWDRVLSGGEQQRLAF 526
Query: 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHR 296
AR +L PK + LDEATSALD +E + + L + T + V HR
Sbjct: 527 ARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 9e-15
Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 42/231 (18%)
Query: 756 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 815
R + +F D + + AG++ + G +G+GK++++ ++ P AG+V G+ I+ +
Sbjct: 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR 70
Query: 816 LKSLRLKIGLVQQEPALFAA-SIFDNIAYGKE---GATEAEVVEAARAANVHGFVSALPN 871
+S + + +P + + +N+ + + A + EA + G
Sbjct: 71 -ESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLED---- 125
Query: 872 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR 931
PVG QLS GQ++R+A+AR L + +LDE +ALD E +L
Sbjct: 126 ---LPVG----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL--------- 169
Query: 932 GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 982
T ++ AH G IV +H L A R L L
Sbjct: 170 --TALMAAH-------------AAQGGIVLLTTHQPLPI--ASAQIRRLDL 203
|
Length = 209 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 1e-14
Identities = 67/290 (23%), Positives = 121/290 (41%), Gaps = 40/290 (13%)
Query: 698 VAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDD-----------PDAEPVETIRGEIE 746
+A+ V+ ++R G+ VG T+D ++ + GE+
Sbjct: 206 IADRVT----VLRRGKVVG----TVDPVAETTEEELAELMVGREVVLRVVKPPSTPGEVV 257
Query: 747 LRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 806
L D + R V KD + +RAG+ + G +G+G+S ++ I P +G++++
Sbjct: 258 LEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILL 317
Query: 807 DGKDI---------RRLNLKSL---RLKIGLVQQEP--ALFAASIFDNIAYGKEGATEAE 852
+GKD+ RRL L + R GLV D + + G +
Sbjct: 318 NGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRR 377
Query: 853 VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 912
+ + F + P LSGG +Q++ +AR + + P +L+ + T
Sbjct: 378 AIRKFARELIEEF-DVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTR 432
Query: 913 ALDAES-ECVLQEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIV 960
LD + E + + LE G+ +L++ L I + D I V+ +GRIV
Sbjct: 433 GLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482
|
Length = 501 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 1e-14
Identities = 67/212 (31%), Positives = 103/212 (48%), Gaps = 20/212 (9%)
Query: 127 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL---QLRWLRDQIGLVNQ 183
G+T+ +VG SGSGKST + R + G + D + L QL +R +I +V Q
Sbjct: 311 PGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQ 369
Query: 184 EP--AL-----FATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERG 236
+P +L I E + +P + A+ E A + L P E
Sbjct: 370 DPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEE--VGLDPETRHRYPAE-- 425
Query: 237 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR--TTVVVA 294
SGGQ+QRIAIARA++ P +++LDE TS+LD ++ + L L + ++
Sbjct: 426 --FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFIS 483
Query: 295 HRLSTIRNV-DTVAVIQQGQVVETGTHEELIA 325
H L +R + V V++QG+VVE G E + A
Sbjct: 484 HDLHVVRALCHQVIVLRQGEVVEQGDCERVFA 515
|
Length = 529 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 67/259 (25%), Positives = 120/259 (46%), Gaps = 53/259 (20%)
Query: 744 EIELRHVDFAYPS----RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP 799
E+ F Y + R V K + +R GQ+ A++G +GSGKS++ ++ +P
Sbjct: 6 EVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP 65
Query: 800 TAGKVMIDG------------KDIRRL-----NLKSLRLKIGLVQQEPALFAASIFDNIA 842
T+G+++I+ K IR + + RL+IG + P +
Sbjct: 66 TSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDL----- 120
Query: 843 YGKEGATEAEVVEAARAANVHGFVSALPN-AYKTPVGERGVQLSGGQKQRIAIARAVLKN 901
+ ++ E R V LP+ A P L+ GQKQR+A+ARA++
Sbjct: 121 --EPEQRRKQIFETLR------MVGLLPDHANYYPH-----MLAPGQKQRVALARALILR 167
Query: 902 PAILLLDEATSALDA--ESECV-----LQEALERLMRGRTTVLVAHRLSTIRGV-DCIGV 953
P I++ DEA ++LD S+ + LQE G + + V + I+ + D + V
Sbjct: 168 PKIIIADEALASLDMSMRSQLINLMLELQEKQ-----GISYIYVTQHIGMIKHISDQVLV 222
Query: 954 VQDGRIVEQGSHSELVSRP 972
+ +G +VE+GS +++++ P
Sbjct: 223 MHEGEVVERGSTADVLASP 241
|
Length = 267 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 1e-14
Identities = 59/224 (26%), Positives = 93/224 (41%), Gaps = 55/224 (24%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI--DGKDI-------- 811
V K+ +L + AG+ AL G SG+GKS+++ + Y P +G++++ +G +
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 812 RRLNLKSLRLKIGLVQQ-------EPAL--FAASIFDNIAYGKEGATEAEVVEAARAA-- 860
L ++ R IG V Q AL A + + G AR
Sbjct: 83 EVLEVR--RKTIGYVSQFLRVIPRVSALEVVAEPLLER------GVPREAARARARELLA 134
Query: 861 --NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 918
N+ + LP A SGG++QR+ IAR + + ILLLDE T++LDA +
Sbjct: 135 RLNIPERLWHLPPA----------TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAAN 184
Query: 919 ECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 962
V+ E + RG IG+ D + E
Sbjct: 185 RQVVVELIAEAKA--------------RGAALIGIFHDEEVREL 214
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 1e-14
Identities = 57/232 (24%), Positives = 113/232 (48%), Gaps = 23/232 (9%)
Query: 756 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 815
S V K NL + G+ AL+G +G+GKS+++ ++ ++PT G + I+ + +L+
Sbjct: 14 SFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD 73
Query: 816 LK-SLRLKIGLVQQEPALF-AASIFDNIAYGKE------GATEAEVVEAARAANVHGFVS 867
K + +L IG++ QE ++ ++ +N+ G+ G + E A +
Sbjct: 74 HKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRV 133
Query: 868 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL-DAESECVLQEAL 926
L V LS KQ + IA+ ++ + ++++DE TS+L + E + + +
Sbjct: 134 GLKVDLDEKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF--LI 187
Query: 927 ERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDG-----RIVEQGSHSELVS 970
+R G V ++H+L+ IR + D V++DG +V S+ ++V
Sbjct: 188 MNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVR 239
|
Length = 510 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 1e-14
Identities = 77/278 (27%), Positives = 133/278 (47%), Gaps = 36/278 (12%)
Query: 729 DPDDPDAEPVETIRGE--IELRHVDFAYPSRP--------DVVVFKDFNLRIRAGQSQAL 778
+P E + GE +++R++ +P R +V + + + G++ +L
Sbjct: 296 AKQEPPIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSL 355
Query: 779 VGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSLRLKIGLVQQEPALFAA 835
VG SGSGKS+ + R + G+++ +G+ I L+ L++LR I + Q+P +A+
Sbjct: 356 VGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDP--YAS 413
Query: 836 ---------SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALP-NAYKTPVGERGVQLS 885
SI + + +A AAR A + V LP +A++ P + S
Sbjct: 414 LDPRQTVGDSIMEPLRVHGLLPGKAA---AARVAWLLERVGLLPEHAWRYPH-----EFS 465
Query: 886 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLS 943
GGQ+QRI IARA+ NP +++ DEA SALD + L L R G + ++H ++
Sbjct: 466 GGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA 525
Query: 944 TIRGVDC-IGVVQDGRIVEQGSHSELVSRPDGAYSRLL 980
+ + + V+ G+IVE G + P Y+R L
Sbjct: 526 VVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKL 563
|
Length = 623 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 2e-14
Identities = 49/181 (27%), Positives = 95/181 (52%), Gaps = 2/181 (1%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 821
V +D + + GQ L+G +GSGKS++++ + R T G++ IDG + L++ R
Sbjct: 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRK 1292
Query: 822 KIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERG 881
G++ Q+ +F+ + N+ E ++ E+ + A + + P+ + + G
Sbjct: 1293 AFGVIPQKVFIFSGTFRKNLD-PYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG 1351
Query: 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHR 941
LS G KQ + +AR++L ILLLDE ++ LD + ++++ L++ T +L HR
Sbjct: 1352 YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHR 1411
Query: 942 L 942
+
Sbjct: 1412 V 1412
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 2e-14
Identities = 58/212 (27%), Positives = 101/212 (47%), Gaps = 12/212 (5%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN-LKSLR 820
+ + +L + G+ ++G +G GK++++ + +G + +DG+DI +L + R
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 821 LKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGE 879
I V Q +F ++ +N+ G R+ + + L K +G
Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTGLAAL-------PRRSRKIPDEIYELFPVLKEMLGR 127
Query: 880 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL--MRGRTTVL 937
RG LSGGQ+Q++AIARA++ P +LLLDE T + + + RL G +L
Sbjct: 128 RGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILL 187
Query: 938 VAHRLSTIRGV-DCIGVVQDGRIVEQGSHSEL 968
V L R + D V++ GR+V G+ EL
Sbjct: 188 VEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 2e-14
Identities = 66/232 (28%), Positives = 115/232 (49%), Gaps = 18/232 (7%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
I+F+NV Y D ++ S G+ ++G +G+GK+T + ++ P+AG +
Sbjct: 8 IDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 160 LLDNVDIKTLQLRWLRDQIGLV----NQEPALFATTILENILYGKPEATMAEVEAAASAA 215
L + + + R R ++G+V N +P T+ EN+L ++ A A
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDPDF---TVRENLLVFGRYFGLSAAAARALVP 120
Query: 216 NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 275
F L N +VGE LSGG K+R+ +ARA++ +P +L+LDE T+ LD +
Sbjct: 121 PLLEFAKL-ENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARH 175
Query: 276 IVQEALDRLMV-GRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEELIA 325
++ E L L+ G+T ++ H + R D + VI++G+ + G LI
Sbjct: 176 LMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227
|
Length = 306 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-14
Identities = 61/228 (26%), Positives = 101/228 (44%), Gaps = 26/228 (11%)
Query: 111 SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ 170
D + + G V +VG +G+GK+T++ I P AG VL+ D++ L
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 171 LRWLRDQIGLVNQEPAL-FATTILENILYGKP----------EATMAEVEAAASAANAHS 219
R ++ V Q+ +L F + + + G+ E A VE A
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ 131
Query: 220 FITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 278
F +R V LSGG++QR+ +ARA+ + +LLLDE T++LD +
Sbjct: 132 FA------------DRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTL 179
Query: 279 EALDRLM-VGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 324
E + RL+ G+T V H L R D + ++ G+V G +++
Sbjct: 180 ELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 68/246 (27%), Positives = 109/246 (44%), Gaps = 44/246 (17%)
Query: 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL--- 819
+D + + G+ +VG SGSGK++++ + P AG+V +D + +L +L
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 820 ------RLKIGLVQQEPA---LFAASIFDNIA----------YGKEGATEA---EVVEAA 857
R + G V Q P S NI YG AT E VE
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEID 141
Query: 858 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 917
A + LP + SGG +QR+ IAR ++ +P ++ +DE T LD
Sbjct: 142 AAR-----IDDLPTTF-----------SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVS 185
Query: 918 SECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDG 974
+ L + L L+R G V+V H L+ R + + V++ GR+VE G +++ P
Sbjct: 186 VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDPQH 245
Query: 975 AYSRLL 980
Y++LL
Sbjct: 246 PYTQLL 251
|
Length = 258 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 2e-14
Identities = 47/187 (25%), Positives = 93/187 (49%), Gaps = 10/187 (5%)
Query: 757 RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIE---RFYDPTAGKVMIDGKDIRR 813
+ D +L + +GQ A++G+SGSGK++++ I T+G+++ +G+ +
Sbjct: 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP 76
Query: 814 LNLKSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNA 872
+ + V+Q+ L ++ + + Y + +A R V L +
Sbjct: 77 ---DQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVE--DVLLRDL 131
Query: 873 YKTPVGERGVQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR 931
T +G V+ +SGG+++R++IA +L +P +L+LDE TS LD+ + L L +L R
Sbjct: 132 ALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR 191
Query: 932 GRTTVLV 938
V++
Sbjct: 192 RNRIVIL 198
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 2e-14
Identities = 59/214 (27%), Positives = 115/214 (53%), Gaps = 22/214 (10%)
Query: 128 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL----DNVDI--KTLQLRWLRDQ-IGL 180
G+ +VG SG+GK+T+ +I +P +G V + + VD+ R + IG+
Sbjct: 310 GEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGI 369
Query: 181 VNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGV-- 237
++QE L+ T+L+N+ EA +E A + ITL G+ + E +
Sbjct: 370 LHQEYDLYPHRTVLDNL----TEAI--GLELPDELARMKAVITLKMVGFDEEKAEEILDK 423
Query: 238 ---QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL--DRLMVGRTTVV 292
+LS G++ R+A+A+ ++K P+I++LDE T +D ++ V ++ R + +T ++
Sbjct: 424 YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFII 483
Query: 293 VAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIA 325
V+H + + +V D A+++ G++V+ G EE++
Sbjct: 484 VSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 56/225 (24%), Positives = 93/225 (41%), Gaps = 56/225 (24%)
Query: 111 SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN----VDI 166
R + +F D S AG+ + + G +G+GK+T++ ++ P+AG V
Sbjct: 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR 70
Query: 167 KTLQ--LRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLL 224
++ L +L Q G+ + L T LEN+ + + + A A A
Sbjct: 71 ESYHQALLYLGHQPGI---KTEL---TALENLHFWQ-RFHGSGNAATIWEALA------- 116
Query: 225 PNGYSTQVGERGV------QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 278
QVG G+ QLS GQ++R+A+AR L + +LDE +ALD +++
Sbjct: 117 ------QVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL- 169
Query: 279 EALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323
T ++ AH QG +V TH+ L
Sbjct: 170 ----------TALMAAH-------------AAQGGIVLLTTHQPL 191
|
Length = 209 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 2e-14
Identities = 69/214 (32%), Positives = 107/214 (50%), Gaps = 40/214 (18%)
Query: 128 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL---QLRWLRDQIGLVNQE 184
G+T+++VG SGSGKST + R + G ++ + I TL +L+ LR I + Q+
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 185 PALFAT---------TILE-----NILYGKPEATMAEVEAAASAANAHSFITLLPNGYST 230
P +A+ +I+E +L GK AAA A + LLP
Sbjct: 410 P--YASLDPRQTVGDSIMEPLRVHGLLPGK--------AAAARVAWLLERVGLLPE---- 455
Query: 231 QVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM----- 285
+ SGGQ+QRI IARA+ NPK+++ DEA SALD SI + ++ L+
Sbjct: 456 HAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDV---SIRGQIINLLLDLQRD 512
Query: 286 VGRTTVVVAHRLSTIRNVD-TVAVIQQGQVVETG 318
G + ++H ++ + + VAV+ GQ+VE G
Sbjct: 513 FGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
|
Length = 623 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 2e-14
Identities = 46/205 (22%), Positives = 90/205 (43%), Gaps = 44/205 (21%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN-LKSLR 820
+D + +RAG+ + G G+G++ + + P +G++ +DGK + R + ++R
Sbjct: 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIR 74
Query: 821 LKIGLV----QQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTP 876
I V ++E + S+ +NIA
Sbjct: 75 AGIAYVPEDRKREGLVLDLSVAENIAL--------------------------------- 101
Query: 877 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES-ECVLQEALERLMRGRTT 935
LSGG +Q++ +AR + ++P +L+LDE T +D + + + E G+
Sbjct: 102 ----SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAV 157
Query: 936 VLVAHRLSTIRGV-DCIGVVQDGRI 959
+L++ L + G+ D I V+ +GRI
Sbjct: 158 LLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 2e-14
Identities = 65/214 (30%), Positives = 101/214 (47%), Gaps = 37/214 (17%)
Query: 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL-DNVDIKTLQLRWL---RDQIGLV 181
PA A+ G SG+GK+++++ I P G ++L V + L + +IG V
Sbjct: 22 PAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYV 81
Query: 182 NQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQ-- 238
Q+ LF + N+ YG MA+ A + LL G++
Sbjct: 82 FQDARLFPHYKVRGNLRYG-----MAKS----MVAQFDKIVALL-----------GIEPL 121
Query: 239 -------LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRT 289
LSGG+KQR+AI RA+L P++LL+DE ++LD + + L+RL +
Sbjct: 122 LDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIP 181
Query: 290 TVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEE 322
+ V+H L I R D V V++QG+V G EE
Sbjct: 182 ILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEE 215
|
Length = 352 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 3e-14
Identities = 65/201 (32%), Positives = 101/201 (50%), Gaps = 30/201 (14%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS--- 818
V + + I G+ A+VG+SGSGKS+++ L+ PT+G V+ +G+ + +L+ +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 819 LR-LKIGLVQQEPAL---FAASIFDNIAY----GKEGATEAEVVEAARAANVHGFVSALP 870
LR K+G + Q L F A +N+A GK+ E +RA + V
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTA--LENVAMPLLIGKKKPAEIN----SRALEMLAAVGLEH 137
Query: 871 NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL- 929
A P +LSGG++QR+AIARA++ NP ++L DE T LDA + + + L L
Sbjct: 138 RANHRPS-----ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELN 192
Query: 930 MRGRTTVLV-------AHRLS 943
T LV A R+S
Sbjct: 193 RLQGTAFLVVTHDLQLAKRMS 213
|
Length = 233 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (181), Expect = 3e-14
Identities = 67/229 (29%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 752 FAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK-- 809
F Y P V K NL LVGA+G GKS++ + P G V+ GK
Sbjct: 9 FRYQDEP---VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL 65
Query: 810 DIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEAEVVEAARAANVHGF 865
D + L +LR ++ V Q+P +F I +IA+ G EAE+ R
Sbjct: 66 DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEI--TRRVDEALTL 123
Query: 866 VSALPNAYKTPVGERGVQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 924
V A + +Q LS GQK+R+AIA A++ LLLDE T+ LD +
Sbjct: 124 VDA------QHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIA 177
Query: 925 ALERLM-RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSR 971
+ R++ +G ++ +H + I + D + V++ G+I+ G+ E+ +
Sbjct: 178 IIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226
|
Length = 271 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 3e-14
Identities = 72/232 (31%), Positives = 113/232 (48%), Gaps = 30/232 (12%)
Query: 758 PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK 817
P V D + RAGQ AL+G +G+GKS+++ ++ Y P AG ++IDG+++R +
Sbjct: 15 PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTT 74
Query: 818 -SLRLKIGLVQQE----PALFAASIFDNIAYG----KEGAT-EAEVVEAARAANVHGFVS 867
+L + ++ QE P + ++ +N+ G K G + AR H V
Sbjct: 75 AALAAGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD 131
Query: 868 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA-ESECVLQEAL 926
P+ TP+ LS GQ+Q + IA+A+ +N ++ DE TS+L A E E L +
Sbjct: 132 IDPD---TPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIE-QLFRVI 183
Query: 927 ERLM-RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVE------QGSHSELVS 970
L GR + V+HR+ I D I V +DGR V Q +LV
Sbjct: 184 RELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVDRDQLVQ 235
|
Length = 501 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 3e-14
Identities = 66/248 (26%), Positives = 105/248 (42%), Gaps = 49/248 (19%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+ ++ Y RD S G+ + +VG SGSGK+T++ I P+AG V
Sbjct: 7 LSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTV 63
Query: 160 LLDNVDIKTLQL---------RWLRDQIGLVNQEPA-------LFATTILENIL------ 197
D + L R LR + G V+Q P I E ++
Sbjct: 64 TYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH 123
Query: 198 YGKPEAT----MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253
YG A + EVE ++ + SGG +QR+ IAR +
Sbjct: 124 YGNIRAEAQDWLEEVEIDL-----------------DRIDDLPRTFSGGMQQRLQIARNL 166
Query: 254 LKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNV-DTVAVIQ 310
+ P+++ +DE T LD ++ + + L L+ G V+V H L+ R + D + V++
Sbjct: 167 VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMK 226
Query: 311 QGQVVETG 318
QGQVVE+G
Sbjct: 227 QGQVVESG 234
|
Length = 258 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 3e-14
Identities = 62/215 (28%), Positives = 116/215 (53%), Gaps = 24/215 (11%)
Query: 758 PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA---GKVMIDGKDIRRL 814
V + +L++RAG+ +L G +G+GKS+++ ++ Y P G+++ +G++++
Sbjct: 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQAS 74
Query: 815 NLK-SLRLKIGLVQQEPALFAA-SIFDNIAYGKE----GAT--EAEVVEAAR-AANVHGF 865
N++ + R I ++ QE AL S+ +NI G E G +A + A + A +
Sbjct: 75 NIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD 134
Query: 866 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEA 925
++ P TPVG L GQ+Q + IA+A+ K +L+LDE T++L VL +
Sbjct: 135 IN--PA---TPVGN----LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI 185
Query: 926 LERLM-RGRTTVLVAHRLSTIRGV-DCIGVVQDGR 958
+ L G + ++H+L+ ++ + D I V++DGR
Sbjct: 186 IRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 4e-14
Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 43/230 (18%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E KN++ + + + S+ P ++G +G+GKST++ +I P +G +
Sbjct: 1 LETKNLSKRFGKQ---TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI 57
Query: 160 LLDNVDIKTLQLRWLRD---QIGLVNQEPALFAT-TILENI-----LYGKPEATMAEVEA 210
+ D W R +IG + + P L+ T EN+ L G P++ + EV
Sbjct: 58 IFDG-------HPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLN 110
Query: 211 AASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALD 270
I L N + Q S G KQR+ IA A+L +PK+L+LDE T+ LD
Sbjct: 111 ----------IVDLTNTGKKKAK----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
Query: 271 AGSESIVQEALDRLMV-----GRTTVVVAHRLSTIRNV-DTVAVIQQGQV 314
+QE L L+ G T ++ +H LS ++ + D + +I +G +
Sbjct: 157 PIG---IQE-LRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVL 202
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 4e-14
Identities = 65/246 (26%), Positives = 121/246 (49%), Gaps = 28/246 (11%)
Query: 745 IELRHVDFAYPS--RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
I++R+V Y S R V + +L ++ G+ +VG SG+GK+++ +I +PT+G
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339
Query: 803 KV-------MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNI--AYGKEGATEAE 852
+V +D + IG++ QE L+ ++ DN+ A G E E
Sbjct: 340 EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELA 399
Query: 853 VVEAARAANVHGF-----VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLL 907
++A + GF L K P +LS G++ R+A+A+ ++K P I++L
Sbjct: 400 RMKAVITLKMVGFDEEKAEEILD---KYPD-----ELSEGERHRVALAQVLIKEPRIVIL 451
Query: 908 DEATSALDAESECVLQEAL--ERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGS 964
DE T +D ++ + ++ R +T ++V+H + + V D +++DG+IV+ G
Sbjct: 452 DEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511
Query: 965 HSELVS 970
E+V
Sbjct: 512 PEEIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 5e-14
Identities = 64/243 (26%), Positives = 105/243 (43%), Gaps = 38/243 (15%)
Query: 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL--- 819
+D + + G+ +VG SGSGK++++ I P AG V +D + +L ++
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81
Query: 820 ------RLKIGLVQQEPA---LFAASIFDNIA----------YGKEGATEAEVVEAARAA 860
R + G V Q P S NI YG A + +E
Sbjct: 82 ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLE--EVE 139
Query: 861 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 920
+ LP + SGG +QR+ IAR ++ P ++ +DE T LD +
Sbjct: 140 IDLDRIDDLPRTF-----------SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQA 188
Query: 921 VLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYS 977
L + L L+R G V+V H L+ R + D + V++ G++VE G ++ P Y+
Sbjct: 189 RLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYT 248
Query: 978 RLL 980
+LL
Sbjct: 249 QLL 251
|
Length = 258 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 5e-14
Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 15/212 (7%)
Query: 127 AGKTVAVVGGSGSGKSTVV----SLIERFYDPNAGHVLLDNVDIKTLQL----RWLRDQI 178
G+ VA++G SGSGKST++ LI + LL + +L R R
Sbjct: 29 HGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANT 88
Query: 179 GLVNQEPALF-ATTILENILYGKPEAT---MAEVEAAASAANAHSFITLLPNGYSTQVGE 234
G + Q+ L ++LEN+L G +T + L G +
Sbjct: 89 GYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ 148
Query: 235 RGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVV 292
R LSGGQ+QR+AIARA+++ K++L DE ++LD S IV + L + G T VV
Sbjct: 149 RVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVV 208
Query: 293 VAHRLS-TIRNVDTVAVIQQGQVVETGTHEEL 323
H++ +R + + ++QG V G+ ++
Sbjct: 209 TLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240
|
Length = 262 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 7e-14
Identities = 64/232 (27%), Positives = 105/232 (45%), Gaps = 20/232 (8%)
Query: 103 KNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD 162
+ +T Y + + ++ P G A++G +G GKST++ + R P GHV LD
Sbjct: 11 EQLTLGYGKY---TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLD 67
Query: 163 NVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGK-PEATM-----AEVEAAASAA 215
I+ + + +IGL+ Q T+ E + G+ P + E E A + A
Sbjct: 68 GEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKA 127
Query: 216 NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 275
+ IT L + LSGGQ+QR IA + + I+LLDE T+ LD +
Sbjct: 128 MQATGITHL-------ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQI 180
Query: 276 IVQEALDRL--MVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 324
+ E L L G T V H L+ R + +++G++V G +E++
Sbjct: 181 DLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232
|
Length = 265 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 7e-14
Identities = 53/226 (23%), Positives = 108/226 (47%), Gaps = 23/226 (10%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+E+ V ++ D + + + G+ L+G +G+GK++ +I +PT G++
Sbjct: 3 LEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI 59
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE--GATEAEVVEAARAAN 861
+G + + ++ +IG + +E L+ ++ D + Y E G +AE+ + +A
Sbjct: 60 TWNGGPLSQ----EIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQA-- 113
Query: 862 VHGFVSAL--PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 919
++ L + E LS G +Q+I AV+ P +L+LDE S LD +
Sbjct: 114 ---WLERLEIVGKKTKKIKE----LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNV 166
Query: 920 CVLQEALERLM-RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQG 963
+L++A+ L G T + +HR+ + D + +++ G+ V G
Sbjct: 167 ELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYG 212
|
Length = 300 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 7e-14
Identities = 64/243 (26%), Positives = 101/243 (41%), Gaps = 31/243 (12%)
Query: 106 TFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 165
F + + +D S P G+ V +G +G+GKST + ++ P +G V ++ D
Sbjct: 28 HFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD 87
Query: 166 IKTLQLRWLRDQIGLVNQE--------PALFATTILENILYGKPEATMAEVEAAASAANA 217
+ +LR IGLV + PAL + +L+ I E+ A
Sbjct: 88 PFRRREEYLRS-IGLVMGQKLQLWWDLPALDSLEVLKLI---------YEIPDDEFAERL 137
Query: 218 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 277
+L + +LS GQ+ R +A A+L PK+L LDE T LD
Sbjct: 138 DFLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV----NA 191
Query: 278 QEALDRLM-----VGRTTVVVA-HRLSTIRNV-DTVAVIQQGQVVETGTHEELIAKAGAY 330
Q + + + TV++ H I + D V +I QGQ+V GT +L + G Y
Sbjct: 192 QANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPY 251
Query: 331 ASL 333
Sbjct: 252 KEF 254
|
Length = 325 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 9e-14
Identities = 64/220 (29%), Positives = 107/220 (48%), Gaps = 33/220 (15%)
Query: 766 FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-RLKIG 824
+ +RAG+ LVG +G+GKS+++A + P +G + G+ + + L R +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 825 LVQQEPALFAASIFDNIA-YGKEGATEAEVVEAARAANVHGFVSALPNAYK--TPVGERG 881
L QQ+ FA +F + + + V A ++ AL K V
Sbjct: 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASA-----LNEVAEALGLDDKLGRSVN--- 125
Query: 882 VQLSGGQKQRIAIARAVLK-----NPA--ILLLDEATSALDAESECVLQE-ALERLMR-- 931
QLSGG+ QR+ +A VL+ NPA +LLLDE ++LD V Q+ AL+RL+
Sbjct: 126 -QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD-----VAQQAALDRLLSEL 179
Query: 932 ---GRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSE 967
G V+ +H L+ T+R D + +++ G+++ G E
Sbjct: 180 CQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDE 219
|
Length = 248 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 69/243 (28%), Positives = 106/243 (43%), Gaps = 34/243 (13%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN---- 155
IE +N+ + S+ G+ +A+VGGSGSGKS +
Sbjct: 5 IELRNIALQ----AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 156 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEP-ALF------ATTILENIL-YGKP--EATM 205
AG VLLD + LR +I + Q P + F T E L GKP +AT+
Sbjct: 61 AGRVLLDGKPVAPCALRGR--KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATL 118
Query: 206 AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 265
A NA + L P ++SGG QR+ IA A+L ++ DE
Sbjct: 119 TAALEAVGLENAARVLKLYP-----------FEMSGGMLQRMMIALALLCEAPFIIADEP 167
Query: 266 TSALDAGSESIVQEALDRLMVGRT--TVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEE 322
T+ LD +++ + + L+ ++ R ++V H + + R D VAV+ G++VE G E
Sbjct: 168 TTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVET 227
Query: 323 LIA 325
L
Sbjct: 228 LFN 230
|
Length = 254 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 1e-13
Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 37/200 (18%)
Query: 756 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL- 814
R + ++F + + AG+ + G +G+GK+S++ ++ P AG+V+ G+ IRR
Sbjct: 10 ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR 69
Query: 815 -----NLKSLRLKIG--------LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAAN 861
+L L +G L E F + + + EA
Sbjct: 70 DEYHQDL----LYLGHQPGIKTELTALENLRFYQRLHGP-------GDDEALWEALAQVG 118
Query: 862 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 921
+ GF PV QLS GQ++R+A+AR L + +LDE +A+D +
Sbjct: 119 LAGFEDV-------PVR----QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVAR 167
Query: 922 LQEALER-LMRGRTTVLVAH 940
L+ L + +G +L H
Sbjct: 168 LEALLAQHAEQGGMVILTTH 187
|
Length = 204 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 1e-13
Identities = 81/274 (29%), Positives = 121/274 (44%), Gaps = 49/274 (17%)
Query: 699 AETVSLAPEIIRGGESVGSVFSTLDRSTRIDPD------DPDAEPVETIRGEIELRHVDF 752
A+ SL I+ + +G V + ++ DPD PD P I I F
Sbjct: 465 AKRASLVQSRIKALDRLGHVDAVVN-----DPDYKFEFPTPDDRPGPPI---ISFSDASF 516
Query: 753 AYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR 812
YP P ++FK+ N I A+VG +G GKS+++ LI P++G V K
Sbjct: 517 GYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK--V 572
Query: 813 RLNLKSLRLKIGL-VQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPN 871
R+ + S GL + P L+ F G E ++ + V G + AL
Sbjct: 573 RMAVFSQHHVDGLDLSSNPLLYMMRCF-------PGVPEQKLRAHLGSFGVTGNL-ALQP 624
Query: 872 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR 931
Y LSGGQK R+A A+ K P ILLLDE ++ LD +A+E L++
Sbjct: 625 MYT---------LSGGQKSRVAFAKITFKKPHILLLDEPSNHLDL-------DAVEALIQ 668
Query: 932 GRT-----TVLVAHRLSTIRG-VDCIGVVQDGRI 959
G ++V+H I G VD + VV +G++
Sbjct: 669 GLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKV 702
|
Length = 718 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 52/221 (23%), Positives = 104/221 (47%), Gaps = 17/221 (7%)
Query: 765 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG-KDIRRLNLKSL-RLK 822
D + + G+ + L+G +G+GK++++ +I P G+V+ DG D+ +L + R
Sbjct: 23 DLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82
Query: 823 IGLVQQEPALFAA-SIFDN--IAYGKEGATEAEVV------EAARAANVHGFVSALPNAY 873
IG Q+P +F ++ +N +A ++ + A + E R + +
Sbjct: 83 IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERD 142
Query: 874 KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR 933
+ LS GQKQ + I + ++P +LLLDE + + E L+ L
Sbjct: 143 RL-----AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKH 197
Query: 934 TTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPD 973
+ ++V H + +R + D + V+ +G ++ +GS E+ + P
Sbjct: 198 SILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDPK 238
|
Length = 249 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 2e-13
Identities = 61/239 (25%), Positives = 111/239 (46%), Gaps = 32/239 (13%)
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI------- 811
++V + + + ++G SGSGKS+++ G + + DI
Sbjct: 38 ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQV--GDIYIGDKKN 95
Query: 812 ----------RRL-NLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKEGATEAEVVEAAR 858
+++ N K LR ++ +V Q P LF +I +I +G A + EA +
Sbjct: 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPV-ALGVKKSEAKK 154
Query: 859 AANVHGFVSALPNAY--KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 916
A + L ++Y ++P G LSGGQK+R+AIA + P IL+ DE T+ LD
Sbjct: 155 LAKFYLNKMGLDDSYLERSPFG-----LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDP 209
Query: 917 ESEC-VLQEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPD 973
+ E ++Q L+ +T ++ H + + V D + V+ G+I++ G+ E+ +
Sbjct: 210 KGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQH 268
|
Length = 320 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 2e-13
Identities = 65/229 (28%), Positives = 111/229 (48%), Gaps = 14/229 (6%)
Query: 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
++ +NVT +Y DV+I +D ++ G+ V VG SG GKST++ +I D +G
Sbjct: 3 SVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD 59
Query: 159 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANA 217
+ + + + +G+V Q AL+ ++ EN+ +G A + E
Sbjct: 60 LFIGEKRMNDVPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQV 117
Query: 218 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 277
+ L + + + LSGGQ+QR+AI R ++ P + LLDE S LDA +
Sbjct: 118 AEVLQL-----AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172
Query: 278 QEALDRL--MVGRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTHEEL 323
+ + RL +GRT + V H ++ + D + V+ G+V + G EL
Sbjct: 173 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
Length = 369 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 2e-13
Identities = 63/212 (29%), Positives = 107/212 (50%), Gaps = 19/212 (8%)
Query: 128 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN----VDIKTL---QLRWLR-DQIG 179
G+ ++G SGSGKST++ + + G VL+ + VD+ LR LR ++
Sbjct: 50 GEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLRTHRVS 109
Query: 180 LVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGV- 237
+V Q+ AL T+ EN+ +G M + E + L Q +R
Sbjct: 110 MVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGL------AQWADRKPG 163
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAH 295
+LSGG +QR+ +ARA ILL+DE SALD + +Q+ L L + +T V V+H
Sbjct: 164 ELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSH 223
Query: 296 RL-STIRNVDTVAVIQQGQVVETGTHEELIAK 326
L ++ + +A+++ G++++ GT EE++
Sbjct: 224 DLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-13
Identities = 57/218 (26%), Positives = 102/218 (46%), Gaps = 36/218 (16%)
Query: 128 GKTVAVVGGSGSGKSTVVSLIERFYDPN----AGHVLLDNVDIKTLQLRWLRDQI-GLVN 182
G+ +AV+G SG+GK+T+++ + F P +G VLL+ + I ++R I V
Sbjct: 51 GELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPIDAKEMR----AISAYVQ 105
Query: 183 QEPALFAT-TILENILY-------------GKPEATMAEVEAAASAANAHSFITLLPNGY 228
Q+ T T+ E++++ K E ++A A++ I
Sbjct: 106 QDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRI------- 158
Query: 229 STQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL-MVG 287
V R LSGG+++R+A A +L +P +L DE TS LD+ V + L L G
Sbjct: 159 --GVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG 216
Query: 288 RTTVVVAHRLST--IRNVDTVAVIQQGQVVETGTHEEL 323
+T + H+ S+ D + ++ +G+V G+ ++
Sbjct: 217 KTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQA 254
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 2e-13
Identities = 65/255 (25%), Positives = 113/255 (44%), Gaps = 43/255 (16%)
Query: 757 RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL 816
+ + ++ + ++ G++ A+VG SGSGKS + R + G V D +RR +
Sbjct: 26 QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSR 85
Query: 817 KSLRLK--------------IGLVQQEPAL-----------FAASIFDNIAYGKEGA-TE 850
+ + L + ++ QEP A SI + +E A E
Sbjct: 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVE 145
Query: 851 AE-VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 909
A+ +++ R +S P+ QLSGG +QR+ IA A+ PA+L+ DE
Sbjct: 146 AKRMLDQVRIPEAQTILSRYPH-----------QLSGGMRQRVMIAMALSCRPAVLIADE 194
Query: 910 ATSALDAESEC-VLQ--EALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSH 965
T+ALD + +LQ + L++ M + + H + + + D + V+ G VE GS
Sbjct: 195 PTTALDVTIQAQILQLIKVLQKEM-SMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSV 253
Query: 966 SELVSRPDGAYSRLL 980
++ P Y+R L
Sbjct: 254 EQIFHAPQHPYTRAL 268
|
Length = 623 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 53/232 (22%), Positives = 106/232 (45%), Gaps = 15/232 (6%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E + VT S+ D + S P G+ ++G +G+GK+T +I +P G +
Sbjct: 3 LEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI 59
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAH 218
+ + +++IG + +E L+ T+ + + Y M + E
Sbjct: 60 TWNGGPLSQEI----KNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQA-- 113
Query: 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 278
L + ++ +LS G +Q+I A++ P++L+LDE S LD + +++
Sbjct: 114 ---WLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLK 170
Query: 279 EALDRLMV-GRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEELIAKAG 328
+A+ L G T + +HR+ + D + ++++GQ V GT E++ G
Sbjct: 171 DAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222
|
Length = 300 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 61/215 (28%), Positives = 101/215 (46%), Gaps = 15/215 (6%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823
+D + I G+ +GA+G+GKS+ + ++ PT+GKV ++GKD R + LR I
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR-SI 99
Query: 824 GLV--QQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSAL--PNAYKTPVGE 879
GLV Q+ + D++ K E+ + A + L K PV
Sbjct: 100 GLVMGQKLQLWWDLPALDSLEVLKL---IYEIPDDEFAERLDFLTEILDLEGFLKWPVR- 155
Query: 880 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEAL--ERLMRGRTTVL 937
+LS GQ+ R +A A+L P +L LDE T LD ++ ++E L R T +L
Sbjct: 156 ---KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL 212
Query: 938 VAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSR 971
H I D + ++ G++V G+ ++L +
Sbjct: 213 TTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247
|
Length = 325 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 2e-13
Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVV-VAHR 296
LSGG++QR+A AR +L PK + LDEATSALD SE + + L L TV+ V HR
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG---ITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 2e-13
Identities = 61/233 (26%), Positives = 115/233 (49%), Gaps = 23/233 (9%)
Query: 103 KNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD 162
KN+ +Y R + D S+ +G+ V ++G +G+GK+T ++ +AG++++D
Sbjct: 7 KNLAKAYKGRR---VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIID 63
Query: 163 NVDIKTLQLRW-LRDQIGLVNQEPALFAT-TILEN---ILYGKPEATMAEVEAAASAANA 217
+ DI L L R IG + QE ++F ++ +N +L + + + + E A+
Sbjct: 64 DEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELME 123
Query: 218 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS---- 273
I L + G LSGG+++R+ IARA+ NPK +LLDE + +D S
Sbjct: 124 EFHIEHLRDSM-------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDI 176
Query: 274 ESIVQEALDRLMVGRTTVVVAHRL-STIRNVDTVAVIQQGQVVETGTHEELIA 325
+ I++ D G ++ H + T+ + ++ QG ++ GT E++
Sbjct: 177 KRIIEHLRDS---GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 3e-13
Identities = 59/225 (26%), Positives = 111/225 (49%), Gaps = 17/225 (7%)
Query: 753 AYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR 812
AY R V +D +L + +G+ L+G +G+GK++ ++ AG ++ID +DI
Sbjct: 12 AYKGRR---VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDIS 68
Query: 813 RLNLKS-LRLKIGLVQQEPALFAA-SIFDNIAYG---KEGATEAEVVEAARAANVHGFVS 867
L L + R IG + QE ++F S++DN+ ++ + + + A +
Sbjct: 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE 128
Query: 868 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 927
L ++ G LSGG+++R+ IARA+ NP +LLDE + +D S ++ +E
Sbjct: 129 HLRDSM-------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIE 181
Query: 928 RLMRGRTTVLVA-HRL-STIRGVDCIGVVQDGRIVEQGSHSELVS 970
L VL+ H + T+ + +V G ++ G+ +E++
Sbjct: 182 HLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 4e-13
Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 23/174 (13%)
Query: 112 RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL 171
R ++F S AG+ + + G +GSGK+T++ LI P AG + LD DI +
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDV 71
Query: 172 RWLRDQIGLVNQ-EPALFATTILENI-----LYGKPEATMAEVEAAASAANAHSFITLLP 225
+G N +PAL T+ EN+ G E ++ AA A + LP
Sbjct: 72 AEACHYLGHRNAMKPAL---TVAENLEFWAAFLGGEEL---DIAAALEAVGLAP-LAHLP 124
Query: 226 NGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 279
GY LS GQK+R+A+AR ++ N I +LDE T+ALDA + ++ E
Sbjct: 125 FGY----------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE 168
|
Length = 207 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 4e-13
Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 7/212 (3%)
Query: 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD-NVDIKTL-QLRWLRD 176
D S G+ ++G +G+GK+T++ +I P G VL D + D+ L + R R
Sbjct: 22 NDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81
Query: 177 QIGLVNQEPALF-ATTILEN--ILYGKPEATMAEVEAAASAANAHSFITLLPN-GYSTQV 232
IG Q+P +F T+ EN + + ++ A + A A LL G +
Sbjct: 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDER 141
Query: 233 GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVV 292
LS GQKQ + I + ++PK+LLLDE + + E L L + +V
Sbjct: 142 DRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILV 201
Query: 293 VAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
V H + +R + D V V+ +G V+ G+ +E+
Sbjct: 202 VEHDMGFVREIADKVTVLHEGSVLAEGSLDEV 233
|
Length = 249 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 4e-13
Identities = 59/215 (27%), Positives = 92/215 (42%), Gaps = 30/215 (13%)
Query: 768 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQ 827
L G+ L+G +G+GK++++ I P G V + G + IG V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55
Query: 828 QEPAL---FAASIFDNIAYGKEG----------ATEAEVVEAARAANVHGFVSALPNAYK 874
Q F S+ + G+ G A A V +A R L
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVG-------LTELAD 108
Query: 875 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GR 933
PVGE LSGGQ+QR+ +ARA+ P++LLLDE + LD ++ +L E L G
Sbjct: 109 RPVGE----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT 164
Query: 934 TTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSEL 968
++ H L+ V+ +GR++ G+ +L
Sbjct: 165 AILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 4e-13
Identities = 61/214 (28%), Positives = 105/214 (49%), Gaps = 18/214 (8%)
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFY--DPTAGKVMIDGKDIRRLNL 816
V +L +R G+ L G +G+GKS+++ ++ Y G++ G ++ N+
Sbjct: 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNI 72
Query: 817 KSLRLK-IGLVQQEPALFAA-SIFDNIAYGKE----GATEAEVVEAARAANV--HGFVSA 868
+ I ++ QE L S+ +NI G E G A RA N+ + A
Sbjct: 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDA 132
Query: 869 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL-DAESECVLQEALE 927
PVG+ G GGQ+Q + IA+A+ K +L+LDE +S+L + E+E +L +
Sbjct: 133 DNVT--RPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD 186
Query: 928 RLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIV 960
G V ++H+L+ ++ V D I V++DG+ V
Sbjct: 187 LKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 5e-13
Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 18/189 (9%)
Query: 756 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK--DIRR 813
R +F + + AG++ + G +GSGK++++ ++ P AG+V+++G D +R
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 814 LNLKSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNA 872
++ L +G P + S+ +N+ + ++ +V EA ++GF
Sbjct: 69 DSIARGLLYLG---HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDR---- 121
Query: 873 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEAL-ERLMR 931
PV QLS GQ++R+A+AR +L + +LDE T+ALD EA+ R
Sbjct: 122 ---PVA----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR 174
Query: 932 GRTTVLVAH 940
G VL H
Sbjct: 175 GGMVVLTTH 183
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 5e-13
Identities = 62/232 (26%), Positives = 107/232 (46%), Gaps = 35/232 (15%)
Query: 767 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL------------ 814
NL +R + +L+G +G+GK++V + FY PT G +++ G+ I L
Sbjct: 25 NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVR 84
Query: 815 NLKSLRLKIGLVQQEPALFA----------ASIFDNIAYGKEGATEAEVVEAARAANVHG 864
+ +RL + E L A + + A+ + E+E ++ RAA
Sbjct: 85 TFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRR---AESEALD--RAATWLE 139
Query: 865 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 924
V L +A + G L+ GQ++R+ IAR ++ P IL+LDE + L+ + L E
Sbjct: 140 RVGLLEHANR-QAG----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDE 194
Query: 925 ALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPD 973
+ L T +L+ H + + G+ D I VV G + G+ E+ + PD
Sbjct: 195 LIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNPD 246
|
Length = 255 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 6e-13
Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 27/220 (12%)
Query: 763 FK---DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN-LKS 818
FK D +L + G+ + ++G +G+GK++++ +I P G V+ G D+ L +
Sbjct: 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQI 74
Query: 819 LRLKIGLVQQEPALFAA-SIFDN--IAYGK---------EGATEAEVVEAARAANVHGFV 866
R IG Q+P +F ++F+N +A + + E G
Sbjct: 75 ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIG-- 132
Query: 867 SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL-DAESECVLQEA 925
L + G LS GQKQ + I ++++P +LLLDE + + D E+E E
Sbjct: 133 --LADEADRLAGL----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETE-KTAEL 185
Query: 926 LERLMRGRTTVLVAHRLSTIRGVDC-IGVVQDGRIVEQGS 964
L+ L + V+V H + +R + + V+ G ++ +GS
Sbjct: 186 LKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 6e-13
Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 30/189 (15%)
Query: 768 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLRLK-I 823
L ++ G++ AL+G SGSGKS+++A++ D ++G+V + G+ + +++ + LR K +
Sbjct: 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHV 90
Query: 824 GLVQQE----PALFAASIFDNIAYGK--EGATEAEVVEAARAANVHGFVSALPNAYKTPV 877
G V Q P L A +N+ G + + A+A + L +
Sbjct: 91 GFVFQSFMLIPTLNA---LENVELPALLRGESSRQSRNGAKA-----LLEQLG------L 136
Query: 878 GER----GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-- 931
G+R QLSGG++QR+A+ARA P +L DE T LD ++ + + L L R
Sbjct: 137 GKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREH 196
Query: 932 GRTTVLVAH 940
G T +LV H
Sbjct: 197 GTTLILVTH 205
|
Length = 228 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 60/235 (25%), Positives = 115/235 (48%), Gaps = 35/235 (14%)
Query: 757 RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL 816
R V K + +R GQ+ A++G +GSGKS++ ++ +PT+G+++ID + +
Sbjct: 23 RQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82
Query: 817 KSLRLKIGLVQQEPA-----------LFAASIFDNIAYGKEGATEAEVVEAARAANVHGF 865
+I ++ Q+P+ + + N E E +++E R
Sbjct: 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPE-QREKQIIETLRQ------ 135
Query: 866 VSALPN-AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 924
V LP+ A P L+ GQKQR+ +ARA++ P +++ DEA ++LD ++
Sbjct: 136 VGLLPDHASYYPH-----MLAPGQKQRLGLARALILRPKVIIADEALASLDMS----MRS 186
Query: 925 ALERLM------RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 972
L LM +G + + V L ++ + D + V+ G +VE+GS +++++ P
Sbjct: 187 QLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASP 241
|
Length = 267 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 1e-12
Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 24/238 (10%)
Query: 730 PDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSV 789
D P + + +ELR+V FAY + NL I+ G+ L+G +GSGKS++
Sbjct: 309 ADFPRPQAFPDWKT-LELRNVRFAYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTL 365
Query: 790 IALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGA 848
L+ Y P +G++++DGK + L+ R L A+F+ +FD + + A
Sbjct: 366 AMLLTGLYQPQSGEILLDGKPVSAEQLEDYR---KLFS---AVFSDYHLFDQLLGPEGKA 419
Query: 849 TEAEVVEAARAANVHGFVSALPNAYKTPVGERGV---QLSGGQKQRIAIARAVLKNPAIL 905
+ + ++ L A+KT + + +LS GQK+R+A+ A+L+ IL
Sbjct: 420 SP---------QLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDIL 470
Query: 906 LLDEATSALD-AESECVLQEALERLMR-GRTTVLVAHRLSTIRGVDCIGVVQDGRIVE 961
+LDE + D A Q L L G+T ++H D + +++G++ E
Sbjct: 471 VLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 2e-12
Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 37/205 (18%)
Query: 777 ALVGASGSGKSSVIALIERFYDPTAGKVMIDGK---DI-RRLNLKSLRLKIGLVQQEPAL 832
A+ G SG+GK+S+I I P G+++++G+ D + + L + +IG V Q+ L
Sbjct: 28 AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARL 87
Query: 833 FAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ-------- 883
F + N+ YG + + A V+ L G++
Sbjct: 88 FPHYKVRGNLRYG---------MAKSMVAQFDKIVALL-----------GIEPLLDRYPG 127
Query: 884 -LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG-RTTVL-VAH 940
LSGG+KQR+AI RA+L P +LL+DE ++LD + L LERL R +L V+H
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSH 187
Query: 941 RLSTI-RGVDCIGVVQDGRIVEQGS 964
L I R D + V++ G++ G
Sbjct: 188 SLDEILRLADRVVVLEQGKVKAFGP 212
|
Length = 352 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 2e-12
Identities = 30/60 (50%), Positives = 40/60 (66%), Gaps = 6/60 (10%)
Query: 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR-TTVL-VAHR 941
LSGG++QR+A AR +L P + LDEATSALD ESE + L +L++ TV+ V HR
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESE----DRLYQLLKELGITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-12
Identities = 61/213 (28%), Positives = 94/213 (44%), Gaps = 62/213 (29%)
Query: 103 KNVTFSYPSRPDVIIFRDFSI-FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL 161
V+ P P I +D S+ FFP K + V+G +G+GKST++ ++ AG
Sbjct: 8 NRVSKVVP--PKKEILKDISLSFFPGAK-IGVLGLNGAGKSTLLRIM-------AG---- 53
Query: 162 DNVDIKTLQLRWLRD--QIGLVNQEPALFAT-TILENI-------------------LYG 199
VD + ++G + QEP L T T+ EN+ +
Sbjct: 54 --VDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFA 111
Query: 200 KPEATM-------AEVEAAASAANAHSFITLL---------PNGYSTQVGERGVQLSGGQ 243
+P+A M AE++ AA+A L P V + LSGG+
Sbjct: 112 EPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPW-DADVTK----LSGGE 166
Query: 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESI 276
++R+A+ R +L P +LLLDE T+ LDA ES+
Sbjct: 167 RRRVALCRLLLSKPDMLLLDEPTNHLDA--ESV 197
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 52/222 (23%), Positives = 106/222 (47%), Gaps = 8/222 (3%)
Query: 122 SIFFPA--GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179
+ F A G+ V +G +G+GKST + +I + P++G V + D+ ++ IG
Sbjct: 20 EVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-VQRNIG 78
Query: 180 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQL 239
+ + L+ + L + A + ++ I L+ G + ++ QL
Sbjct: 79 YLPEHNPLYLDMYVREYL--QFIAGIYGMKGQLLKQRVEEMIELV--GLRPEQHKKIGQL 134
Query: 240 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLST 299
S G +QR+ +A+A++ +PK+L+LDE T+ LD ++ + + +T ++ H +
Sbjct: 135 SKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQE 194
Query: 300 IRNV-DTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMV 340
+ + D V +I +G++V +EL A + F+E +
Sbjct: 195 VEAICDRVIIINKGKIVADKKLDELSAANKKQVIEVEFEEQI 236
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 3e-12
Identities = 63/229 (27%), Positives = 109/229 (47%), Gaps = 19/229 (8%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA--- 156
+E K + ++ V + G+ V + G +G+GKST++ ++ Y P+
Sbjct: 2 LEMKGIVKTFG---GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWD 57
Query: 157 GHVLLDNVDIKTLQLRWL-RDQIGLVNQEPALFAT-TILENILYGK----PEATMAEVEA 210
G + +K +R R I +++QE L ++ ENI G P MA
Sbjct: 58 GEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAM 117
Query: 211 AASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALD 270
A N + L + + VG+ G GGQ+Q + IA+A+ K ++L+LDE +S+L
Sbjct: 118 YLRAKNLLRELQLDADNVTRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLT 173
Query: 271 AGSESIVQEALDRLMV-GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVET 317
I+ + + L G V ++H+L+ ++ V DT+ VI+ GQ V T
Sbjct: 174 EKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT 222
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 3e-12
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 11/171 (6%)
Query: 111 SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ 170
R +F S AG+ + V G +GSGK+T++ ++ P AG VLL+ + +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 171 LRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYST 230
R + L + ++LEN+ + + + +VE A + + F
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVA---- 124
Query: 231 QVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL 281
QLS GQ++R+A+AR +L + +LDE T+ALD + EA+
Sbjct: 125 -------QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 3e-12
Identities = 74/253 (29%), Positives = 121/253 (47%), Gaps = 37/253 (14%)
Query: 749 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKS-SVIALIERFYDP--TAGKVM 805
V F+ P DV D N +RAG++ +VG SGSGKS + AL+ G
Sbjct: 19 RVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT 77
Query: 806 IDGKDIRRLNLKSL-RL---KIGLVQQEPALFAASIFDNIAYGKE---------GATEAE 852
+G++I L K L +L +I ++ Q+P S+ + G++ G ++AE
Sbjct: 78 FNGREILNLPEKELNKLRAEQISMIFQDPM---TSLNPYMRVGEQLMEVLMLHKGMSKAE 134
Query: 853 VVEAARAANVHGFVSALPNAYKTPVGERGVQL-----SGGQKQRIAIARAVLKNPAILLL 907
E + V L +A K P + +++ SGG +QR+ IA A+L P +L+
Sbjct: 135 AFEES--------VRML-DAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIA 185
Query: 908 DEATSALDAESECVLQEALERLMRGRTT--VLVAHRLSTIRGV-DCIGVVQDGRIVEQGS 964
DE T+ALD + + L L R T +++ H L + G+ D + V+ GR +E G+
Sbjct: 186 DEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245
Query: 965 HSELVSRPDGAYS 977
++ +P YS
Sbjct: 246 ARDVFYQPSHPYS 258
|
Length = 330 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 3e-12
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 30/199 (15%)
Query: 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERF--------YDPTAGKVMIDGKDIR 812
V ++ NL I+ G A+VG SG+GK++++ +I Y P +GKV + +
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS 456
Query: 813 RLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNA 872
L EP +I +++ + ++ A N G A+
Sbjct: 457 ALIPGEY---------EPEFGEVTILEHL-----RSKTGDLNAAVEILNRAGLSDAV--L 500
Query: 873 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR- 931
Y+ E LS GQK+R +A+ + + P +LL+DE + LD + + + L R
Sbjct: 501 YRRKFSE----LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELARE 556
Query: 932 -GRTTVLVAHRLSTIRGVD 949
G T ++V HR +
Sbjct: 557 AGITLIVVTHRPEVGNALR 575
|
Length = 593 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 4e-12
Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 22/180 (12%)
Query: 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
++ + V SY + VI D + G+ + +VG SG GKST++ ++ +G
Sbjct: 3 GLKLQAVRKSYDGKTQVIKGIDLDV--ADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE 60
Query: 159 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG-K----PEATMAE-VEAA 211
+ + + L+ RD I +V Q AL+ ++ EN+ YG K P+A + E V A
Sbjct: 61 IWIGGRVVNELEPA-DRD-IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEA 118
Query: 212 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271
A + P +LSGGQ+QR+A+ RA+++ P + L DE S LDA
Sbjct: 119 ARILELEPLLDRKPR-----------ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167
|
Length = 356 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 4e-12
Identities = 64/220 (29%), Positives = 104/220 (47%), Gaps = 33/220 (15%)
Query: 128 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI---GLVN-- 182
+ V+++G +G+GK+TV + + FY P G +LL I+ L QI G+V
Sbjct: 31 QEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLP----GHQIARMGVVRTF 86
Query: 183 QEPALFAT-TILENILYGK---------------PEATMAEVEAAASAANAHSFITLLPN 226
Q LF T++EN+L + P AE EA AA + LL +
Sbjct: 87 QHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH 146
Query: 227 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM- 285
+ Q G L+ GQ++R+ IAR M+ P+IL+LDE + L+ + E + L
Sbjct: 147 A-NRQAG----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRN 201
Query: 286 -VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
T +++ H + + + D + V+ QG + GT EE+
Sbjct: 202 EHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241
|
Length = 255 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 5e-12
Identities = 56/212 (26%), Positives = 103/212 (48%), Gaps = 29/212 (13%)
Query: 127 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL-RDQIGLVNQEP 185
AG+ + +VG +G+GKST+++ + +G + ++ L R + L Q+
Sbjct: 24 AGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQT 82
Query: 186 ALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245
FA + + +P+ T E A A + L + QLSGG+ Q
Sbjct: 83 PPFAMPVWHYLTLHQPDKTRTE--LLNDVAGALALDDKLGRSTN--------QLSGGEWQ 132
Query: 246 RIAIARAMLK-----NP--KILLLDEATSALDAGSESIVQEALDRLMV-----GRTTVVV 293
R+ +A +L+ NP ++LLLDE ++LD +S ALDRL+ G V+
Sbjct: 133 RVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQS----ALDRLLSALCQQGLAIVMS 188
Query: 294 AHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 324
+H L+ T+R+ ++++G+++ +G EE++
Sbjct: 189 SHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 5e-12
Identities = 63/248 (25%), Positives = 121/248 (48%), Gaps = 59/248 (23%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA--- 156
+E KN+T ++ V + S+ AG+ V++ G +G+GKST++ ++ Y P+
Sbjct: 6 LEMKNITKTFG---GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYE 61
Query: 157 GHVLLDNVDIKTLQLRWLRDQ----IGLVNQEPALFAT-TILENI--------------- 196
G ++ + + LQ +RD I +++QE AL ++LENI
Sbjct: 62 GEIIFEG---EELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYD 118
Query: 197 -LYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255
+Y + + +A+++ + A T VG L GQ+Q + IA+A+ K
Sbjct: 119 AMYLRAQKLLAQLKLDINPA--------------TPVGN----LGLGQQQLVEIAKALNK 160
Query: 256 NPKILLLDEATSALDAGSE-----SIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVI 309
++L+LDE T++L SE I+++ G + ++H+L+ ++ + DT+ VI
Sbjct: 161 QARLLILDEPTASLTE-SETAVLLDIIRDLKAH---GIACIYISHKLNEVKAISDTICVI 216
Query: 310 QQGQVVET 317
+ G+ + T
Sbjct: 217 RDGRHIGT 224
|
Length = 506 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 5e-12
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 19/177 (10%)
Query: 111 SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ 170
SR + ++F S AG+ + V G +G GK+T++ ++ P++G V + + +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 171 LRWLRDQIGLVNQEPALFAT-TILENILY----GKPEATMAEVEAAASAANAHSFITLLP 225
R I + P L + LEN+ + +E A +A F L
Sbjct: 69 DEPHR-NILYLGHLPGLKPELSALENLHFWAAIHGGAQRT--IEDALAAVGLTGFEDLPA 125
Query: 226 NGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALD 282
QLS GQ++R+A+AR L + +LDE T+ALD +++ L
Sbjct: 126 A-----------QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLR 171
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 6e-12
Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 50/221 (22%)
Query: 753 AYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM--IDGKD 810
P P + KD +L G ++G +G+GKS+++ ++M +D K+
Sbjct: 13 VVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLL------------RIMAGVD-KE 57
Query: 811 IRRLNLKSLRLKIGLVQQEPAL-FAASIFDNI-------------------AYGKEGA-- 848
+ +K+G + QEP L ++ +N+ + + A
Sbjct: 58 FNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADM 117
Query: 849 -----TEAEVVEAARAANVHGFVSALP---NAYKTPVGERGVQ-LSGGQKQRIAIARAVL 899
+AE+ E AA+ L +A + P + V LSGG+++R+A+ R +L
Sbjct: 118 DALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLL 177
Query: 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH 940
P +LLLDE T+ LDAES L++ L+ G T V V H
Sbjct: 178 SKPDMLLLDEPTNHLDAESVAWLEQHLQEY-PG-TVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 6e-12
Identities = 68/261 (26%), Positives = 117/261 (44%), Gaps = 33/261 (12%)
Query: 724 RSTRIDPDDPDAEPVETIRG--EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGA 781
+ P + + +ELR+V FAY V NL I+ G+ L+G
Sbjct: 300 NKLALAPYKAEFPRPQAFPDWQTLELRNVTFAYQDNGFSV--GPINLTIKRGELLFLIGG 357
Query: 782 SGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-----S 836
+GSGKS++ L+ Y P +G++++DGK + + R LF+A
Sbjct: 358 NGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYR----------KLFSAVFTDFH 407
Query: 837 IFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGE---RGVQLSGGQKQRIA 893
+FD + G EG + A A V ++ L A+K + + ++LS GQK+R+A
Sbjct: 408 LFDQL-LGPEG-------KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLA 459
Query: 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCI 951
+ A+ + ILLLDE + D + L L++ G+T ++H D +
Sbjct: 460 LLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRL 519
Query: 952 GVVQDGRIVE-QGSHSELVSR 971
+++G++ E G + SR
Sbjct: 520 LEMRNGQLSELTGEERDAASR 540
|
Length = 547 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 7e-12
Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 10/148 (6%)
Query: 128 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL---QLRWLRDQ-IGLVNQ 183
G+T+A++G SGSGKST+++++ D ++G V L + + LR + +G V Q
Sbjct: 36 GETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQ 95
Query: 184 EPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG 242
L T LEN+ P E S A + + L G ++ QLSGG
Sbjct: 96 SFMLIPTLNALENVEL--PALLRGESSRQ-SRNGAKALLEQL--GLGKRLDHLPAQLSGG 150
Query: 243 QKQRIAIARAMLKNPKILLLDEATSALD 270
++QR+A+ARA P +L DE T LD
Sbjct: 151 EQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 9e-12
Identities = 63/233 (27%), Positives = 98/233 (42%), Gaps = 41/233 (17%)
Query: 751 DFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD 810
+V K + I G+ +G +G+GK++ + ++ PT+G+V + G
Sbjct: 25 SLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLV 84
Query: 811 --IRRLNLKSLRLKIGLV--QQE------PAL----FAASIFDNIAYGKEGATEAEVVEA 856
RR +IG+V Q+ P + A+I+D + + E+ E
Sbjct: 85 PWKRRKKFLR---RIGVVFGQKTQLWWDLPVIDSFYLLAAIYD-LPPARFKKRLDELSEL 140
Query: 857 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 916
+ TPV R QLS GQ+ R IA A+L P IL LDE T LD
Sbjct: 141 LDLEEL----------LDTPV--R--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV 186
Query: 917 ESECVLQEALERLMRGR-TTV-LVAHRLSTI----RGVDCIGVVQDGRIVEQG 963
++ ++ L+ R R TTV L +H + I R V I GR++ G
Sbjct: 187 VAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID---KGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 1e-11
Identities = 43/207 (20%), Positives = 84/207 (40%), Gaps = 50/207 (24%)
Query: 118 FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR-WLRD 176
RD S AG+ V + G G+G++ + + P +G + LD + R +R
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 177 QIGLVNQEP---ALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQV 232
I V ++ L ++ ENI L
Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENI-------------------------AL--------- 101
Query: 233 GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVV 292
LSGG +Q++ +AR + ++P++L+LDE T +D G+++ + + L V+
Sbjct: 102 ---SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158
Query: 293 VAHRLST-----IRNVDTVAVIQQGQV 314
+ +S+ + D + V+ +G++
Sbjct: 159 L---ISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 1e-11
Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 54/231 (23%)
Query: 102 FKNVTFSYPSRPDVI-IFRDFSIFFPAGKTVAVVGGSGSGKST----VVSLIERFYDPNA 156
++N++F+ I I +DFS G+ V V+G GSG ST + + E
Sbjct: 6 WRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVE- 64
Query: 157 GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAA 215
G + + + K ++ + I V++E F T T+ E + + A
Sbjct: 65 GDIHYNGIPYKEFAEKYPGEII-YVSEEDVHFPTLTVRETL------------DFALRC- 110
Query: 216 NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 275
+ F+ RG+ SGG+++R++IA A++ +L D +T LD+ +
Sbjct: 111 KGNEFV-------------RGI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSST-- 153
Query: 276 IVQEALDRLMVGRTTVVVAHRLSTI-----------RNVDTVAVIQQGQVV 315
AL+ L RT V + +T D V V+ +G+ +
Sbjct: 154 ----ALEILKCIRTMADVL-KTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 1e-11
Identities = 59/213 (27%), Positives = 95/213 (44%), Gaps = 62/213 (29%)
Query: 103 KNVTFSYPSRPDVIIFRDFSI-FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL 161
V+ P P I +D S+ FFP K + V+G +G+GKST++ ++ AG
Sbjct: 10 NRVSKVVP--PKKQILKDISLSFFPGAK-IGVLGLNGAGKSTLLRIM-------AG---- 55
Query: 162 DNVDIKTLQLRWLRD--QIGLVNQEPALFAT-TILENI-------------------LYG 199
VD + ++G + QEP L T+ EN+ Y
Sbjct: 56 --VDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYA 113
Query: 200 KPEAT-------MAEVEAAASAANAH---SFITL------LPNGYSTQVGERGVQLSGGQ 243
+P+A E++ AA+A S + + P +V +LSGG+
Sbjct: 114 EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPW-DAKVT----KLSGGE 168
Query: 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESI 276
++R+A+ R +L+ P +LLLDE T+ LDA ES+
Sbjct: 169 RRRVALCRLLLEKPDMLLLDEPTNHLDA--ESV 199
|
Length = 556 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 2e-11
Identities = 66/258 (25%), Positives = 113/258 (43%), Gaps = 49/258 (18%)
Query: 97 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 156
N NI F + + R+ S G+T+A+VG SGSGKS + R +
Sbjct: 17 NLNIAFMQ------EQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAG 70
Query: 157 GHV-------------LLDNVDIKTLQLRWLRD-QIGLVNQEP-----ALFAT--TILEN 195
G V +++ + Q+R +R + ++ QEP +F I E+
Sbjct: 71 GLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAES 130
Query: 196 IL----YGKPEATMAEVEAAASAA---NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIA 248
I + EA M E + A + ++ P+ QLSGG +QR+
Sbjct: 131 IRLHQGASREEA-MVEAKRMLDQVRIPEAQTILSRYPH-----------QLSGGMRQRVM 178
Query: 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DT 305
IA A+ P +L+ DE T+ALD ++ + + + L + + + H + + + D
Sbjct: 179 IAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADR 238
Query: 306 VAVIQQGQVVETGTHEEL 323
V V+ QG+ VETG+ E++
Sbjct: 239 VLVMYQGEAVETGSVEQI 256
|
Length = 623 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 56/215 (26%), Positives = 99/215 (46%), Gaps = 14/215 (6%)
Query: 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178
D S++ G+ ++G +G+GK+T++ +I P+ G VL D+ QI
Sbjct: 19 NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDL----TGLPEHQI 74
Query: 179 -----GLVNQEPALF-ATTILEN--ILYGKPEATMAEVEAAASAANAHSFITLLPN-GYS 229
G Q+P +F T+ EN + + ++ A + SA +L G +
Sbjct: 75 ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA 134
Query: 230 TQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRT 289
+ LS GQKQ + I ++++PK+LLLDE + + E L L +
Sbjct: 135 DEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHS 194
Query: 290 TVVVAHRLSTIRNVDT-VAVIQQGQVVETGTHEEL 323
VVV H + +R++ V V+ QG V+ G+ +++
Sbjct: 195 VVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-11
Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 25/224 (11%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E +NV F+Y + ++ G+ V ++GG+GSGKST+ L+ Y P +G +
Sbjct: 323 LELRNVRFAYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
Query: 160 LLDN--VDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANA 217
LLD V + L+ D L + A+F+ L + L G E AS
Sbjct: 381 LLDGKPVSAEQLE-----DYRKLFS---AVFSDYHLFDQLLGP--------EGKASPQLI 424
Query: 218 HSFITLLPNGYSTQVGERGV---QLSGGQKQRIAIARAMLKNPKILLLDEATSALD-AGS 273
++ L + T + + +LS GQK+R+A+ A+L+ IL+LDE + D A
Sbjct: 425 EKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFR 484
Query: 274 ESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVE 316
Q L L G+T ++H + D + ++ GQ+ E
Sbjct: 485 REFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 2e-11
Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 39/188 (20%)
Query: 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL----DNVDIKTLQLR 172
+ R+ S+ AG+ V + G SGSGKST++ + Y P+ G +L+ + VD+ T + R
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 173 WL----RDQIGLVNQ-------EPAL--FATTILENILYGKPEATMAEVEAAASAANAHS 219
+ R IG V+Q AL A +L V + A A
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR-----------GVPREVARAKAAD 134
Query: 220 FITLLPNGYSTQVGERGVQL-----SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274
+T L + ER L SGG++QR+ IAR + + ILLLDE T++LDA +
Sbjct: 135 LLTRL------NLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNR 188
Query: 275 SIVQEALD 282
++V E +
Sbjct: 189 AVVVELIR 196
|
Length = 235 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 2e-11
Identities = 73/254 (28%), Positives = 111/254 (43%), Gaps = 42/254 (16%)
Query: 749 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVI-ALIERFYDPTA------ 801
H+ A R + +D +LRI G+ AL+G +G+GKS+++ AL A
Sbjct: 6 HLHVARRHR---AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARV 62
Query: 802 -GKVMIDGKDIRRLNLKSL-RLKIGLVQQEPALFAASIFDNIAYG------KEGATEAEV 853
G V ++G+ + ++ L RL+ L Q FA S + + G + GA
Sbjct: 63 TGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRD 122
Query: 854 VEAARAANVHGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLK---------NPA 903
E A AL A T + R V LSGG+ R+ AR + + P
Sbjct: 123 GEIAWQ--------ALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPR 174
Query: 904 ILLLDEATSALDAESECVLQEALERLMR----GRTTVLVAHRLSTIRGVDCIGVVQDGRI 959
LLLDE T+ALD + L + + RL R G ++ L+ R D I ++ DG I
Sbjct: 175 YLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAI 233
Query: 960 VEQGSHSELVSRPD 973
V G+ ++ V P
Sbjct: 234 VAHGAPAD-VLTPA 246
|
Length = 272 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 3e-11
Identities = 63/276 (22%), Positives = 120/276 (43%), Gaps = 55/276 (19%)
Query: 718 VFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQA 777
V L+ P++ EPV +R S +D + +RAG+
Sbjct: 243 VGRELEDLFPEPPEEGIGEPVLEVRNL-----------SGGGK--VRDVSFTVRAGEILG 289
Query: 778 LVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN-LKSLRLKIGLV----QQEPAL 832
+ G G+G++ + + ++G++++DGK +R + +++ I V + E +
Sbjct: 290 IAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLV 349
Query: 833 FAASIFDNIA----------YGKEGATEAEVVEAARAA-NVHGFVSALPNAYKTPVGERG 881
SI +NI + E + E + KTP E+
Sbjct: 350 LDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI-----------KTPSPEQP 398
Query: 882 VQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALD--AESECVLQEALERLMR-----GR 933
+ LSGG +Q++ +AR + +P +L+LDE T +D A++E + RL+R G+
Sbjct: 399 IGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAE------IYRLIRELAAEGK 452
Query: 934 TTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSEL 968
++++ L + G+ D I V+++GRIV + E
Sbjct: 453 AILMISSELPELLGLSDRILVMREGRIVGELDREEA 488
|
Length = 500 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 3e-11
Identities = 52/206 (25%), Positives = 96/206 (46%), Gaps = 18/206 (8%)
Query: 766 FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 825
N+ Q A +G +G+GK++ ++++ PT+G V++ GKDI NL ++R +G+
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGM 1007
Query: 826 VQQEPALF-----AASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGER 880
Q LF A I EA++ A + E
Sbjct: 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLED---------TGLHHKRNEE 1058
Query: 881 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH 940
LSGG ++++++A A + + +++LDE TS +D S + + L + GRT ++ H
Sbjct: 1059 AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTH 1118
Query: 941 RL--STIRGVDCIGVVQDGRIVEQGS 964
+ + + G D I ++ GR+ G+
Sbjct: 1119 HMDEADLLG-DRIAIISQGRLYCSGT 1143
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 3e-11
Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 30/196 (15%)
Query: 756 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 815
SR + ++F+ + + AG++ + G +G GK++++ ++ P +G+V +G +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 816 LKSLR----------LKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGF 865
+ R LK L E F A+I G + + +A A + GF
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHFWAAIH--------GGAQRTIEDALAAVGLTGF 120
Query: 866 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEA 925
P QLS GQ++R+A+AR L + +LDE T+ALD +L
Sbjct: 121 E-------DLPAA----QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGL 169
Query: 926 LE-RLMRGRTTVLVAH 940
L L RG +L H
Sbjct: 170 LRAHLARGGIVLLTTH 185
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 4e-11
Identities = 54/209 (25%), Positives = 100/209 (47%), Gaps = 28/209 (13%)
Query: 773 GQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG-------- 824
G+ +G +G+GKS+ + +I + P +G V + G+D+ + N K ++ IG
Sbjct: 28 GRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGYLPEHNPL 86
Query: 825 ---LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERG 881
+ +E F A I YG +G + VE V P +K +G
Sbjct: 87 YLDMYVREYLQFIAGI-----YGMKGQLLKQRVEEMIE-----LVGLRPEQHKK-IG--- 132
Query: 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHR 941
QLS G +QR+ +A+A++ +P +L+LDE T+ LD ++ ++ + + +T +L H
Sbjct: 133 -QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHI 191
Query: 942 LSTIRGV-DCIGVVQDGRIVEQGSHSELV 969
+ + + D + ++ G+IV EL
Sbjct: 192 MQEVEAICDRVIIINKGKIVADKKLDELS 220
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 4e-11
Identities = 68/246 (27%), Positives = 107/246 (43%), Gaps = 41/246 (16%)
Query: 104 NVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN---AGHVL 160
VTFS P DV D + AG+T+ +VG SGSGKS + N G
Sbjct: 19 RVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT 77
Query: 161 LDNVDIKTL---QLRWLR-DQIGLVNQEPALFATTI---------LENIL-----YGKPE 202
+ +I L +L LR +QI ++ Q+P T++ L +L K E
Sbjct: 78 FNGREILNLPEKELNKLRAEQISMIFQDPM---TSLNPYMRVGEQLMEVLMLHKGMSKAE 134
Query: 203 ATMAEVEA--AASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKIL 260
A V A A + + P+ + SGG +QR+ IA A+L PK+L
Sbjct: 135 AFEESVRMLDAVKMPEARKRMKMYPH-----------EFSGGMRQRVMIAMALLCRPKLL 183
Query: 261 LLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVET 317
+ DE T+ALD ++ + L+ L +++ H L + + D V V+ G+ +E
Sbjct: 184 IADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243
Query: 318 GTHEEL 323
G ++
Sbjct: 244 GNARDV 249
|
Length = 330 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 5e-11
Identities = 66/226 (29%), Positives = 111/226 (49%), Gaps = 29/226 (12%)
Query: 128 GKTVAVVGGSGSGKSTVVSLIE-RFYDPN-AGHVLLDNVDIKTLQLRWLRDQIGLVNQEP 185
G+ +AV+G SGSGKST+++ + R N G +L +N L+ + G V Q+
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILK----RTGFVTQDD 149
Query: 186 ALFA-TTILENILYGK----PEATMAEVEAAASAANAHSFITLL--PNGYSTQVGE---R 235
L+ T+ E +++ P++ + + A S I+ L +T +G R
Sbjct: 150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILV----AESVISELGLTKCENTIIGNSFIR 205
Query: 236 GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEALDRLMVGRTTVVVA 294
G+ SGG+++R++IA ML NP +L+LDE TS LDA + +V G+T V
Sbjct: 206 GI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSM 263
Query: 295 HRLST--IRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQE 338
H+ S+ + D+V V+ +G+ + G + A AY + F
Sbjct: 264 HQPSSRVYQMFDSVLVLSEGRCLFFGKGSD----AMAYFESVGFSP 305
|
Length = 659 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 7e-11
Identities = 59/246 (23%), Positives = 109/246 (44%), Gaps = 37/246 (15%)
Query: 101 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL 160
F + ++P V D S AG+ A++G +G+GKST++ ++ Y P+AG +L
Sbjct: 6 SFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL 62
Query: 161 LDNVDIKTLQLRWLRDQ----IGLVNQE----PALFATTILENILYGKPEATM-----AE 207
+D + ++ + ++ QE P + T+ EN+ G+
Sbjct: 63 IDG---QEMRFASTTAALAAGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRL 116
Query: 208 VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 267
+ A H + + P+ T + LS GQ+Q + IA+A+ +N +++ DE TS
Sbjct: 117 LNYEAREQLEHLGVDIDPD---TPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTS 169
Query: 268 ALDAGSESIVQEALDRLMV-GRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETG------T 319
+L A + + L GR + V+HR+ I D + V + G+ V T
Sbjct: 170 SLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVD 229
Query: 320 HEELIA 325
++L+
Sbjct: 230 RDQLVQ 235
|
Length = 501 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 7e-11
Identities = 64/230 (27%), Positives = 105/230 (45%), Gaps = 31/230 (13%)
Query: 767 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 826
+L + AG S A VGA+GSGKS++ + +G+ I RL+ + L+ LV
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQ---KLV 79
Query: 827 QQEPALFAASIFDNIAYGKE--GATEAEVVE--------AARAANVHGFVSALPNAYKTP 876
E + + D ++ G++ G T AE+++ + A G + L +K
Sbjct: 80 SDE---WQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFK-- 134
Query: 877 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTT 935
LS G+ ++ + +A++ P +L+LDE LD S L E L L + G T
Sbjct: 135 ------YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITL 188
Query: 936 VLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH 984
VLV +R I V GV+ D + E G E++ + + + QL H
Sbjct: 189 VLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ-----ALVAQLAH 233
|
Length = 490 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 8e-11
Identities = 57/240 (23%), Positives = 112/240 (46%), Gaps = 39/240 (16%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
I + S+ V + ++ G+ A++G +G+GKST++ ++ ++P G +
Sbjct: 6 ISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI 62
Query: 160 LLDNVDIKTLQLRWLRDQ--IGLVNQEPALF-ATTILENILYGK---------PEATMAE 207
++N++ L + L Q IG++ QE ++ T+LEN+ G+ E
Sbjct: 63 TINNINYNKLDHK-LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWRE 121
Query: 208 VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 267
+ A+ + LL G + E+ LS KQ + IA+ ++ + K++++DE TS
Sbjct: 122 MRVRAA-------MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTS 174
Query: 268 ALDAGSESIVQEALDRLMV--------GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 318
S+ + +D L + G V ++H+L+ IR + D V++ G V +G
Sbjct: 175 -------SLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 8e-11
Identities = 59/213 (27%), Positives = 105/213 (49%), Gaps = 31/213 (14%)
Query: 127 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG-LVNQEP 185
AG+ + +VG +G+GKST+++ + P +G + ++ L L Q+
Sbjct: 21 AGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAYLSQQQT 79
Query: 186 ALFATTILENI-LYGKPEATMAEVEAAAS-AANAHSFITLLPNGYSTQVGERGVQLSGGQ 243
FA + + + L+ + V +A + A A L S QLSGG+
Sbjct: 80 PPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGR--SVN------QLSGGE 131
Query: 244 KQRIAIARAMLK-----NP--KILLLDEATSALDAGSESIVQE-ALDRLMV-----GRTT 290
QR+ +A +L+ NP ++LLLDE ++LD + Q+ ALDRL+ G
Sbjct: 132 WQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD-----VAQQAALDRLLSELCQQGIAV 186
Query: 291 VVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEE 322
V+ +H L+ T+R+ D V +++QG+++ +G +E
Sbjct: 187 VMSSHDLNHTLRHADRVWLLKQGKLLASGRRDE 219
|
Length = 248 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 8e-11
Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 6/60 (10%)
Query: 883 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG--RTTVLVAH 940
QLSGG+K R+A+A+ +L+NP +LLLDE T+ LD ES EALE ++ T +LV+H
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES----IEALEEALKEYPGTVILVSH 125
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 1e-10
Identities = 58/230 (25%), Positives = 96/230 (41%), Gaps = 23/230 (10%)
Query: 110 PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT- 168
R V +D S AG+ V + G +G+G+S +V I P +G +LL+ D+
Sbjct: 266 KDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGR 325
Query: 169 ---LQLRWL--------RDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANA 217
+ R L R GLV L +L KP + ++ A A
Sbjct: 326 LSPRERRRLGLAYVPEDRHGHGLVLDLS-LAENLVL-GRHDKKPFSRGGFLDRRAIRKFA 383
Query: 218 HSFIT---LLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274
I + LSGG +Q++ +AR + + P +L+ + T LD G+
Sbjct: 384 RELIEEFDVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAI 439
Query: 275 SIVQEALDRL-MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEE 322
+ E L L G+ ++++ L I + D +AVI +G++V EE
Sbjct: 440 EFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489
|
Length = 501 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 60.1 bits (145), Expect = 1e-10
Identities = 34/179 (18%), Positives = 59/179 (32%), Gaps = 58/179 (32%)
Query: 128 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPAL 187
G+ + +VG GSGK+T+ + R P G V+ + + ++ I
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII-------- 53
Query: 188 FATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247
VG + SG + R+
Sbjct: 54 --------------------------------------------VGGKKASGSGELRLRL 69
Query: 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV------GRTTVVVAHRLSTI 300
A+A A P +L+LDE TS LDA E+++ + ++ TV++
Sbjct: 70 ALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 35/205 (17%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+ L +V ++ R V D +L ++ G+ L+G +G+GKS+++ ++ P G +
Sbjct: 5 VSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQ----EPAL-FAASIFDNIAYGKEGATEAEVVEAARA 859
+GK L+IG V Q + L + F + G + ++ +A
Sbjct: 62 KRNGK-----------LRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQA 110
Query: 860 ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 919
++ P+ +LSGG+ QR+ +ARA+L P +L+LDE T +D +
Sbjct: 111 GHLIDA----------PMQ----KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQ 156
Query: 920 CVLQEALERLMR--GRTTVLVAHRL 942
L + +++L R ++V+H L
Sbjct: 157 VALYDLIDQLRRELDCAVLMVSHDL 181
|
Length = 251 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 64/233 (27%), Positives = 108/233 (46%), Gaps = 29/233 (12%)
Query: 769 RIRAGQSQALVGASGSGKS----SVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824
++ G+ +VG SGSGKS +++ LI+ A K+ +G+D++R++ K R +G
Sbjct: 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVG 88
Query: 825 ----LVQQEPAL-------FAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAY 873
++ Q+P I + I + G + RA ++ V +P+
Sbjct: 89 AEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTR---RQRAIDLLNQV-GIPD-- 142
Query: 874 KTPVGERGV---QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM 930
P V QLSGG QR+ IA A+ P +L+ DE T+ALD + + E L L
Sbjct: 143 --PASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQ 200
Query: 931 RGRTT--VLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 980
+ VL+ H L+ + I V+ G++VE G ++ P Y++ L
Sbjct: 201 QKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQAL 253
|
Length = 326 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-10
Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 31/203 (15%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+ +NV+ S+ R + D S+ GK + ++G +G+GKST+V ++ P+ G +
Sbjct: 5 VSLENVSVSFGQRR---VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTIL--ENILYGKPEATMAEVEAAASAANA 217
+ +LR IG V Q+ L T L L +P ++ A A
Sbjct: 62 ------KRNGKLR-----IGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQA 110
Query: 218 HSFITLLPNGYSTQVGERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 276
I + +Q LSGG+ QR+ +ARA+L P++L+LDE T +D +
Sbjct: 111 GHLI------------DAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVA 158
Query: 277 VQEALDRLM--VGRTTVVVAHRL 297
+ + +D+L + ++V+H L
Sbjct: 159 LYDLIDQLRRELDCAVLMVSHDL 181
|
Length = 251 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 19/220 (8%)
Query: 114 DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLI--ERFYDPNAGHVLLDNVDIKTL-- 169
D I + ++ G+ A++G +GSGKST+ I Y+ +G +L D+ L
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP 71
Query: 170 QLRWLRDQIGLVNQEPALFATTILENILYGKPEA-TMAEVEAAASAANAHSFITLLPN-- 226
R R + L Q P L A A E + F+ LL
Sbjct: 72 DER-ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLD---FLKLLKAKL 127
Query: 227 ---GYSTQVGERGVQ--LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL 281
G + R V SGG+K+R I + L PK+ +LDE S LD + IV E +
Sbjct: 128 ALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGI 187
Query: 282 DRLMV-GRTTVVVAH--RLSTIRNVDTVAVIQQGQVVETG 318
+RL R+ +++ H RL D V V+ G++V++G
Sbjct: 188 NRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 3e-10
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 54/185 (29%)
Query: 770 IRAGQSQALVGASGSGKSS---VIA------LIERFYDPTAGKVMIDGKDIRRLNLKSLR 820
++ G AL+G SG+GK++ V+A +I G+++I+G+ + K+ +
Sbjct: 30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT-------GEILINGRPLD----KNFQ 78
Query: 821 LKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGER 880
G V+Q+ V EA R F + L R
Sbjct: 79 RSTGYVEQQDVHSP---------------NLTVREALR------FSALL----------R 107
Query: 881 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL-MRGRTTVLVA 939
G LS Q++R+ I + P+IL LDE TS LD+++ + L++L G+ +
Sbjct: 108 G--LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTI 165
Query: 940 HRLST 944
H+ S
Sbjct: 166 HQPSA 170
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 5e-10
Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 16/226 (7%)
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSS---VIALIERFYDPTAGKVMIDGKDIRRLN 815
D + K NL ++ G+ A++G +GSGKS+ IA Y+ T+G ++ G+D+ L
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPS-YEVTSGTILFKGQDLLELE 70
Query: 816 LKSLRLKIGL---VQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNA 872
R + GL Q + S + + A E + + A
Sbjct: 71 PDE-RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLAL 129
Query: 873 YKTP--VGERGVQ--LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALER 928
R V SGG+K+R I + L P + +LDE S LD ++ ++ E + R
Sbjct: 130 LGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINR 189
Query: 929 LM-RGRTTVLVAHRLSTIRGV--DCIGVVQDGRIVEQGSHSELVSR 971
L R+ +++ H + + D + V+ DGRIV+ G EL
Sbjct: 190 LREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD-VELAKE 234
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 5e-10
Identities = 65/271 (23%), Positives = 105/271 (38%), Gaps = 30/271 (11%)
Query: 56 SFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYP----S 111
+ L F + +E+ ++ D+ +IE K+V + S
Sbjct: 300 ACQRLADFGERFNEPEPELELSDADNVLLLAH------DKSVDSIELKDVHMNPKAPEGS 353
Query: 112 RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL 171
+ D I G V +VG +G GKST+ L Y P G +LLD +
Sbjct: 354 EGFALGPIDLRI--AQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSR 411
Query: 172 RWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAAN----AHSFITLLPNG 227
RD A+FA L + L G E A ++ A A + + G
Sbjct: 412 DDYRDLFS------AIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADK-VKIEDGG 464
Query: 228 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL--DRLM 285
+ST LS GQ++R+A+ A L++ ILL DE + D + E L D
Sbjct: 465 FSTTTA-----LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR 519
Query: 286 VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVE 316
G+T ++++H D + + G +V+
Sbjct: 520 QGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 5e-10
Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 22/229 (9%)
Query: 743 GEIELRHVDFAYPSRPDVVVFK--DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT 800
IEL+ V + F +LRI G +VG +G GKS++ L Y P
Sbjct: 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ 395
Query: 801 AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARA 859
G++++DG + + R A+FA +FD++ EG E A
Sbjct: 396 EGEILLDGAAVSADSRDDYR------DLFSAIFADFHLFDDLIGPDEG-------EHASL 442
Query: 860 ANVHGFVSALPNAYKTPVGERG----VQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 915
N ++ L A K + + G LS GQ++R+A+ A L++ ILL DE + D
Sbjct: 443 DNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQD 502
Query: 916 AESECVLQEAL--ERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 962
+ E L + +G+T ++++H D I + G IV+
Sbjct: 503 PAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 5e-10
Identities = 54/196 (27%), Positives = 95/196 (48%), Gaps = 26/196 (13%)
Query: 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822
+D + + G ALVG +GSGKS++ + F +GK+ I G+ R+ K+L
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNL--- 79
Query: 823 IGLVQQEPAL---FAASIFDNIAYGKEG---------ATEAEVVEAARAANVHGFVSALP 870
+ V Q + F + D + G+ G + ++V AA A V +
Sbjct: 80 VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALAR-----VDMVE 134
Query: 871 NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM 930
++ +GE LSGGQK+R+ +ARA+ + ++LLDE + +D ++E + L L
Sbjct: 135 FRHRQ-IGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELR 189
Query: 931 -RGRTTVLVAHRLSTI 945
G+T ++ H L ++
Sbjct: 190 DEGKTMLVSTHNLGSV 205
|
Length = 272 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 6e-10
Identities = 61/214 (28%), Positives = 107/214 (50%), Gaps = 27/214 (12%)
Query: 773 GQSQALVGASGSGKSSVI-ALIERFYDPT-AGKVMIDGKDIRRLNLKSLRLKIGLVQQEP 830
G+ A++G SGSGKS+++ AL R G ++ + + + LK + G V Q+
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILK----RTGFVTQDD 149
Query: 831 ALFA------ASIFDNIAYGKEGATEAEVVEAARAANVHGFVS--ALPNAYKTPVGE--- 879
L+ +F ++ + T+ E + A + +S L T +G
Sbjct: 150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESV-----ISELGLTKCENTIIGNSFI 204
Query: 880 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLV 938
RG+ SGG+++R++IA +L NP++L+LDE TS LDA + L L L +G+T V
Sbjct: 205 RGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTS 262
Query: 939 AHRLST--IRGVDCIGVVQDGRIVEQGSHSELVS 970
H+ S+ + D + V+ +GR + G S+ ++
Sbjct: 263 MHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296
|
Length = 659 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 58.2 bits (142), Expect = 6e-10
Identities = 27/58 (46%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAH 295
QLSGG+K R+A+A+ +L+NP +LLLDE T+ LD S ++EAL T ++V+H
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSH 125
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 6e-10
Identities = 54/211 (25%), Positives = 110/211 (52%), Gaps = 16/211 (7%)
Query: 767 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL-KSLRLKIGL 825
+L I G+ L+GA+G+GK++++ + T+G+++ DGKDI K +R + +
Sbjct: 25 SLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAI 84
Query: 826 VQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQL 884
V + +F+ ++ +N+A G A + E R V+ P ++ + +R +
Sbjct: 85 VPEGRRVFSRMTVEENLAMGGFFAERDQFQE--RIKWVYEL---FPRLHERRI-QRAGTM 138
Query: 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR----GRTTVLVAH 940
SGG++Q +AI RA++ P +LLLDE + L + ++Q+ + + + G T LV
Sbjct: 139 SGGEQQMLAIGRALMSQPRLLLLDEPSLGL---APIIIQQIFDTIEQLREQGMTIFLVEQ 195
Query: 941 RLS-TIRGVDCIGVVQDGRIVEQGSHSELVS 970
+ ++ D V+++G +V + + L++
Sbjct: 196 NANQALKLADRGYVLENGHVVLEDTGDALLA 226
|
Length = 237 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 7e-10
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 32/173 (18%)
Query: 111 SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL- 169
R + I+F S AG+ V + G +G+GK++++ ++ P+AG VL I+
Sbjct: 10 ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR 69
Query: 170 -----QLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLL 224
L +L Q G+ + L T LEN+ + + + EA A
Sbjct: 70 DEYHQDLLYLGHQPGI---KTEL---TALENLRFYQRLHGPGDDEALWEAL--------- 114
Query: 225 PNGYSTQVGERGV------QLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271
QVG G QLS GQ++R+A+AR L + +LDE +A+D
Sbjct: 115 -----AQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDK 162
|
Length = 204 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 8e-10
Identities = 66/240 (27%), Positives = 102/240 (42%), Gaps = 37/240 (15%)
Query: 93 LDEVNGNIEFKNVTFSYPSRPDVI---IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIE 149
LD EF+++ S+ R VI + R+ ++ G VAVVG SG+GK+T++ +I
Sbjct: 371 LDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMIL 430
Query: 150 RF--------YDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP 201
Y P++G V + + L EP TILE+ L K
Sbjct: 431 GAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEY---------EPEFGEVTILEH-LRSKT 480
Query: 202 EATMAEVEAAASA-ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKIL 260
A VE A + Y + E LS GQK+R +A+ + + P +L
Sbjct: 481 GDLNAAVEILNRAGLSDAVL-------YRRKFSE----LSTGQKERAKLAKLLAERPNVL 529
Query: 261 LLDEATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIRNV--DTVAVIQQGQVVE 316
L+DE + LD + V + L G T +VV HR + DT+ ++ G+V
Sbjct: 530 LIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVPV 589
|
Length = 593 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 1e-09
Identities = 60/218 (27%), Positives = 108/218 (49%), Gaps = 25/218 (11%)
Query: 767 NLRIRAGQSQALVGASGSGKSSVIALIERFY--DPTAG-KVMIDGKDIRRL-----NLKS 818
+L I G+ AL+G SGSGKS+++ + D +AG + + G+ ++R +++
Sbjct: 24 DLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRK 83
Query: 819 LRLKIGLVQQEPALF-AASIFDNIAYGKEGATEA--------EVVEAARAANVHGFVSAL 869
R G + Q+ L S+ +N+ G G+T + RA V +
Sbjct: 84 SRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV 143
Query: 870 PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL 929
A+ +R LSGGQ+QR+AIARA+++ ++L DE ++LD ES ++ + L +
Sbjct: 144 HFAH-----QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDI 198
Query: 930 MR--GRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGS 964
+ G T V+ H++ +R + I ++ G + GS
Sbjct: 199 NQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236
|
Length = 262 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 1e-09
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 32/212 (15%)
Query: 127 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPA 186
G+ + ++G +G+GK+T++ I P G V + IG V Q
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGA-----SPGKGWRHIGYVPQRHE 59
Query: 187 L---FATTILENILYGKP----------EATMAEVEAAASAANAHSFITLLPNGYSTQVG 233
F ++ ++ G+ A A V A T++
Sbjct: 60 FAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGL------------TELA 107
Query: 234 ERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTV 291
+R V +LSGGQ+QR+ +ARA+ P +LLLDE + LD ++ ++ E L G +
Sbjct: 108 DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAIL 167
Query: 292 VVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323
+ H L+ V+ G+V+ GT ++L
Sbjct: 168 MTTHDLAQAMATCDRVVLLNGRVIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 2e-09
Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 54/202 (26%)
Query: 753 AYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM--IDGKD 810
P P + KD +L G ++G +G+GKS+++ ++M +D K+
Sbjct: 15 VVP--PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLL------------RIMAGVD-KE 59
Query: 811 IR---RLNLKSLRLKIGLVQQEP------------------------------ALFAASI 837
R + +K+G + QEP A +A
Sbjct: 60 FEGEARP---APGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPD 116
Query: 838 FDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIAR 896
D A E E+++AA A ++ + +A + P + V +LSGG+++R+A+ R
Sbjct: 117 ADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCR 176
Query: 897 AVLKNPAILLLDEATSALDAES 918
+L+ P +LLLDE T+ LDAES
Sbjct: 177 LLLEKPDMLLLDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 57/208 (27%), Positives = 89/208 (42%), Gaps = 52/208 (25%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI--DGKDIRRLN---- 815
V ++ +L + AG+ L G SGSGKS+++ + Y P G++++ +G+ + +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 816 --LKSLRLKIGLVQQ---------------EPALFAASIFDNIAYGKEGATEAEVVEAAR 858
L+ R IG V Q EP L EV A
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLL-------------ARGVPREVARAKA 132
Query: 859 AA-----NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 913
A N+ + +L A SGG++QR+ IAR + + ILLLDE T++
Sbjct: 133 ADLLTRLNLPERLWSLAPA----------TFSGGEQQRVNIARGFIVDYPILLLDEPTAS 182
Query: 914 LDAESECVLQEAL-ERLMRGRTTVLVAH 940
LDA + V+ E + E RG V + H
Sbjct: 183 LDATNRAVVVELIREAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-09
Identities = 61/212 (28%), Positives = 102/212 (48%), Gaps = 37/212 (17%)
Query: 739 ETIR-GEI--ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIER 795
E R G+I E+ +V++ + KDF+ +++ G AL+G +G GK++++ L+
Sbjct: 311 EASRSGKIVFEMENVNYQID---GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLG 367
Query: 796 FYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALF--AASIFDNIAYGKEGATEAEV 853
+G++ K L++ Q A ++ DN+A GK+ EV
Sbjct: 368 QLQADSGRIHCGTK-----------LEVAYFDQHRAELDPEKTVMDNLAEGKQ-----EV 411
Query: 854 VEAARAANVHGFVSAL---PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 910
+ R +V G++ P TPV LSGG++ R+ +AR LK +L+LDE
Sbjct: 412 MVNGRPRHVLGYLQDFLFHPKRAMTPVK----ALSGGERNRLLLARLFLKPSNLLILDEP 467
Query: 911 TSALDAESECVLQEALERLMRGR--TTVLVAH 940
T+ LD E+ E LE L+ T +LV+H
Sbjct: 468 TNDLDVET----LELLEELLDSYQGTVLLVSH 495
|
Length = 635 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 3e-09
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 30/170 (17%)
Query: 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFY---DPTAGKVMIDGKDIRRLNLKSL 819
F++ +L +RAG+ L G G+G++ L E Y G++M++GK+I L+
Sbjct: 279 FRNISLEVRAGEILGLAGVVGAGRTE---LAETLYGLRPARGGRIMLNGKEINALSTAQ- 334
Query: 820 RLKIGLV-----QQEPALF---------AASIFDNIAYGKEGATEAEVVEAARAANVHGF 865
RL GLV +Q L+ A + + + A E V+E R A F
Sbjct: 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF 394
Query: 866 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 915
N + LSGG +Q++ IA+ + +P +L++DE T +D
Sbjct: 395 -----NHAEQAAR----TLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435
|
Length = 510 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-09
Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHR 941
LSGG+KQR+ +AR + K P + L DE T LD ++ ++ ALE ++ G + VL +H
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 942 LSTIRGVDCIGV-VQDGRIVEQGSHSELVSR 971
I + + +++G I E+G+ E+V+
Sbjct: 229 PEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 4e-09
Identities = 62/238 (26%), Positives = 99/238 (41%), Gaps = 31/238 (13%)
Query: 100 IEFKNVTFSYPSR-----P-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD 153
+E +NVTF+Y P ++ I R G+ + ++GG+GSGKST+ L+ Y
Sbjct: 323 LELRNVTFAYQDNGFSVGPINLTIKR--------GELLFLIGGNGSGKSTLAMLLTGLYQ 374
Query: 154 PNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAAS 213
P +G +LLD + Q R V + LF + PE A
Sbjct: 375 PQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLL-------GPEGKPANPALVEK 427
Query: 214 AANAHSFITLLPNGYSTQVGER--GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271
L R ++LS GQK+R+A+ A+ + ILLLDE + D
Sbjct: 428 WLE-----RLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDP 482
Query: 272 GSESIV-QEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVE-TGTHEELIAK 326
Q L L +G+T ++H + D + ++ GQ+ E TG + ++
Sbjct: 483 HFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERDAASR 540
|
Length = 547 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 5e-09
Identities = 63/219 (28%), Positives = 97/219 (44%), Gaps = 33/219 (15%)
Query: 128 GKTVAVVGGSGSGKS----TVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG---- 179
G+ V +VG SGSGKS ++ LI+ A + + D++ + + R+ +G
Sbjct: 33 GEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVA 92
Query: 180 LVNQEPALFATTILENILYGKPEATMAEV---EAAASAANAHSFITLLPNGYSTQVG--- 233
++ Q+P T L N Y M + + I LL QVG
Sbjct: 93 MIFQDP----MTSL-NPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLL-----NQVGIPD 142
Query: 234 ---ERGV---QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG 287
V QLSGG QR+ IA A+ PK+L+ DE T+ALD ++ + E L L
Sbjct: 143 PASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK 202
Query: 288 RTT--VVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
V++ H L+ + + V+ GQVVETG ++
Sbjct: 203 ENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDI 241
|
Length = 326 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 5e-09
Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 34/214 (15%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
I+ ++ P+ V+ + + + +G + + G +G GKSS+ ++ + G++
Sbjct: 452 IKFENIPLVTPN--GDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRL 509
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAY-------GKEGATEAEVVEAA 857
K K+ V Q P + ++ D I Y + G ++ ++ +
Sbjct: 510 TKPAKG-----------KLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQIL 558
Query: 858 RAANVHGFVSALPNAYKTPVGERGVQ-----LSGGQKQRIAIARAVLKNPAILLLDEATS 912
NV L + + G VQ LSGG+KQRIA+AR P +LDE TS
Sbjct: 559 D--NVQ-----LTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTS 611
Query: 913 ALDAESECVLQEALERLMRGRTTVLVAHRLSTIR 946
A+ + E + G T V+HR S +
Sbjct: 612 AVSVDVEGYMYRLCREF--GITLFSVSHRKSLWK 643
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 6e-09
Identities = 56/233 (24%), Positives = 110/233 (47%), Gaps = 19/233 (8%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+ F V+ Y + + S+ G+ V ++G +G+GK+T++ + +G +
Sbjct: 6 LSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62
Query: 160 LLDNVDIKTLQL-RWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANA 217
+ D DI Q + +R+ + +V + +F+ T+ EN+ G A + +
Sbjct: 63 VFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYE 122
Query: 218 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 277
L P + ++ +R +SGG++Q +AI RA++ P++LLLDE + L + I+
Sbjct: 123 -----LFPRLHERRI-QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL---APIII 173
Query: 278 QEALDRLMV----GRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELIA 325
Q+ D + G T +V + ++ D V++ G VV T + L+A
Sbjct: 174 QQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226
|
Length = 237 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 9e-09
Identities = 60/227 (26%), Positives = 101/227 (44%), Gaps = 45/227 (19%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
I F + +F YP P ++F++ + +A+VG +G GKST++ LI P++G V
Sbjct: 509 ISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQE----------PALFATTILENILYGKPEATMAEVE 209
R + ++ + +Q P L+ + K A +
Sbjct: 567 F-----------RSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG 615
Query: 210 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 269
+ A L Y+ LSGGQK R+A A+ K P ILLLDE ++ L
Sbjct: 616 VTGNLA--------LQPMYT---------LSGGQKSRVAFAKITFKKPHILLLDEPSNHL 658
Query: 270 DAGS-ESIVQEALDRLMVGRTTVVVAHRLSTIR-NVDTVAVIQQGQV 314
D + E+++Q + L G ++V+H I +VD + V+ +G+V
Sbjct: 659 DLDAVEALIQGLV--LFQG-GVLMVSHDEHLISGSVDELWVVSEGKV 702
|
Length = 718 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 9e-09
Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 22/217 (10%)
Query: 756 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 815
S P V + NL++R AL+G +G+GKS+++ + Y +G ++ GK+I +
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEI---D 63
Query: 816 LKS----LRLKIGLVQQEPALF-AASIFDNI---AYGKEG--ATEAEVVEAARAANVHGF 865
KS L I +V QE L S+ DN+ Y +G + ++ +A
Sbjct: 64 FKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELD 123
Query: 866 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEA 925
+ P + LS Q Q I IA+A N I+++DE TS+L + L
Sbjct: 124 IDIDPR-------AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI 176
Query: 926 LERLM-RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIV 960
+ +L RG V ++H++ I + D I +++DG+ +
Sbjct: 177 IRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213
|
Length = 491 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 58/221 (26%), Positives = 101/221 (45%), Gaps = 34/221 (15%)
Query: 118 FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL---RWL 174
RD S P G A+VG +GSGKST+ + G V L + I L + L
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKAL-------MGFVRLASGKISILGQPTRQAL 75
Query: 175 RDQ-IGLVNQEPAL---FATTILENILYGK---------PEATMAEVEAAASAANAHSFI 221
+ + V Q + F + + ++ G+ + ++ AA A +
Sbjct: 76 QKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALAR-----V 130
Query: 222 TLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL 281
++ + Q+GE LSGGQK+R+ +ARA+ + +++LLDE + +D +E+ + L
Sbjct: 131 DMVEFRHR-QIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLL 185
Query: 282 DRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHE 321
L G+T +V H L ++ V+ +G V+ +G E
Sbjct: 186 RELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTE 226
|
Length = 272 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 61/228 (26%), Positives = 103/228 (45%), Gaps = 33/228 (14%)
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERF--YDPTAGKVMIDGKDIRRLN- 815
+ + K NL I G+ A++G +GSGKS++ +I Y G ++ G+ I L
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78
Query: 816 -LKSLRLKIGLVQQEPALFAA---SIFDNIAYG----KEGATEAEVVEAARAANVHGFVS 867
++ L I L Q P + F +AY +G E + +E F+
Sbjct: 79 EERA-HLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLE---------FLE 128
Query: 868 ALPNAYKTPVG------ERGVQ--LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 919
+ K VG R V SGG+K+R I + L + + +LDE S LD ++
Sbjct: 129 IINEKLKL-VGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDAL 187
Query: 920 CVLQEALERLMR-GRTTVLVAH--RLSTIRGVDCIGVVQDGRIVEQGS 964
++ E + +LM + +L+ H RL D + V+Q+G+I++ G
Sbjct: 188 KIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235
|
Length = 252 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 4e-08
Identities = 63/228 (27%), Positives = 104/228 (45%), Gaps = 41/228 (17%)
Query: 84 IQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKST 143
I P R D+V IE +N++ + + ++ D S P G V V+G +G+GKST
Sbjct: 310 IYIPPGPRLGDKV---IEAENLSKGFGDK---LLIDDLSFKLPPGGIVGVIGPNGAGKST 363
Query: 144 VVSLIERFYDPNAGHVLL-DNVDIKTLQLRWLRDQIGLVNQE-PALFAT-TILENILYGK 200
+ +I P++G + + + V ++ V+Q AL T+ E I G
Sbjct: 364 LFRMITGQEQPDSGTIKIGETV------------KLAYVDQSRDALDPNKTVWEEISGGL 411
Query: 201 PEATMAEVEAAASA-ANAHSFITLLPNGYSTQ--VGERGVQLSGGQKQRIAIARAMLKNP 257
+ + E + A +F G Q VG QLSGG++ R+ +A+ +
Sbjct: 412 DIIQLGKREVPSRAYVGRFNF-----KGSDQQKKVG----QLSGGERNRVHLAKTLKSGG 462
Query: 258 KILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAH------RLST 299
+LLLDE T+ LD + ++EAL L VV++H R++T
Sbjct: 463 NVLLLDEPTNDLDVETLRALEEAL--LEFAGCAVVISHDRWFLDRIAT 508
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 4e-08
Identities = 61/216 (28%), Positives = 98/216 (45%), Gaps = 37/216 (17%)
Query: 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEP 185
P G+ V ++G +GSGKST+ +LI PN G VDIK + GL Q
Sbjct: 48 PEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKG-----TVDIKG-SAALIAISSGLNGQ-- 99
Query: 186 ALFATTILENI-----LYGKPEATMAEV-EAAASAANAHSFITLLPNGYSTQVGERGVQL 239
T +ENI + G + + E+ A+ FI YS+
Sbjct: 100 ----LTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSS--------- 146
Query: 240 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL----MVGRTTVVVAH 295
G K R+ A ++ NP IL++DE AL G ++ ++ LD++ G+T ++H
Sbjct: 147 --GMKSRLGFAISVHINPDILVIDE---ALSVGDQTFTKKCLDKMNEFKEQGKTIFFISH 201
Query: 296 RLSTIRNVDTVAV-IQQGQVVETGTHEELIAKAGAY 330
LS +++ T A+ + GQV E G +E++ +
Sbjct: 202 SLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEF 237
|
Length = 549 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 5e-08
Identities = 58/225 (25%), Positives = 95/225 (42%), Gaps = 31/225 (13%)
Query: 87 PTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVS 146
P G + NG I+F+N+ P+ DV+I S P+G + + G +G GKS++
Sbjct: 440 PGRGIVEYQDNG-IKFENIPLVTPNG-DVLI-ESLSFEVPSGNNLLICGPNGCGKSSLFR 496
Query: 147 LIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMA 206
++ + G + + ++ V Q P + T+ + I+Y P+++
Sbjct: 497 ILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIY--PDSSED 543
Query: 207 EVEAAASAANAHSFITLLPNGYSTQVGERGV----------QLSGGQKQRIAIARAMLKN 256
S + +L N T + ER LSGG+KQRIA+AR
Sbjct: 544 MKRRGLSDKD---LEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHK 600
Query: 257 PKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIR 301
P+ +LDE TSA+ E + G T V+HR S +
Sbjct: 601 PQFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVSHRKSLWK 643
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 6e-08
Identities = 62/227 (27%), Positives = 107/227 (47%), Gaps = 25/227 (11%)
Query: 756 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 815
+ P V L + G+ ALVG +G+GKS+++ ++ Y AG ++ GK++
Sbjct: 13 AFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG 72
Query: 816 LK-SLRLKIGLVQQEPALFAA-SIFDNIAYGKEGATE----------AEVVEAARAANVH 863
K S IG++ QE L +I +NI G+E AE + N+
Sbjct: 73 PKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNL- 131
Query: 864 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL-DAESECVL 922
+ VGE LS G++Q + IA+ + ++++DE T AL D E+E +
Sbjct: 132 ------RFSSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLF 181
Query: 923 QEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSEL 968
+ E +GR V ++HRL I + D + V +DG+ + + ++L
Sbjct: 182 RVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228
|
Length = 501 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 52.4 bits (125), Expect = 8e-08
Identities = 43/179 (24%), Positives = 61/179 (34%), Gaps = 61/179 (34%)
Query: 777 ALVGASGSGKSSVIALIERFYDPTAGKV-MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA 835
+VG GSGK+++ + R P G V IDG+DI L L L I
Sbjct: 6 LIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII------------ 53
Query: 836 SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895
VG + SG + R+A+A
Sbjct: 54 -----------------------------------------VGGKKASGSGELRLRLALA 72
Query: 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLM-------RGRTTVLVAHRLSTIRG 947
A P +L+LDE TS LDAE E +L E + + T +L + +
Sbjct: 73 LARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGP 131
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 8e-08
Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 16/195 (8%)
Query: 104 NVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163
+ F Y +P + + S PAG + + G +G+GK+T++ LI +P G +L +
Sbjct: 6 ELDFDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER 62
Query: 164 VDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFIT 222
IK L + Q+ V + T+ EN LY ++ + A
Sbjct: 63 QSIKK-DLCTYQKQLCFVGHRSGINPYLTLRENCLY--------DIHFSPGAVGITELCR 113
Query: 223 LLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS-ESIVQEAL 281
L + G+ LS GQK+++A+ R + K+ LLDE ALD S +I+ +
Sbjct: 114 LFSLEHLIDY-PCGL-LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQ 171
Query: 282 DRLMVGRTTVVVAHR 296
+ G ++ +H+
Sbjct: 172 EHRAKGGAVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 8e-08
Identities = 67/260 (25%), Positives = 109/260 (41%), Gaps = 42/260 (16%)
Query: 93 LDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY 152
LD N IEFK S+ V S+ G+ +VG SGSGKS + I
Sbjct: 4 LDIRNLTIEFKT------SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVN 57
Query: 153 DPN----AGHVLLDNVDIKTLQLRWLRDQIG----LVNQEPAL-------FATTILENIL 197
N A + D++D+ L R R +G ++ QEP +++NI
Sbjct: 58 KDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNI- 116
Query: 198 YGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERG---------VQLSGGQKQRIA 248
P T I LL +VG + +L+ G+ Q++
Sbjct: 117 ---PAWTYKGRWWQRFGWRKRRAIELL-----HRVGIKDHKDIMRSYPYELTEGECQKVM 168
Query: 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIRN-VDT 305
IA A+ P++L+ DE T++++ +++ + L RL T ++++H L I D
Sbjct: 169 IAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADK 228
Query: 306 VAVIQQGQVVETGTHEELIA 325
+ V+ GQ VE+ EEL+
Sbjct: 229 INVLYCGQTVESAPSEELVT 248
|
Length = 330 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 53/243 (21%), Positives = 103/243 (42%), Gaps = 29/243 (11%)
Query: 736 EPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVI-ALIE 794
EP E +E R++ P D + +R G+ + G G+G++ ++ AL
Sbjct: 249 EPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFG 308
Query: 795 RFYDPTAGKVMIDGKDIR-RLNLKSLRLKIGLVQQEP---------------ALFAASIF 838
+ G V I+GK + R +++R I +V ++ L F
Sbjct: 309 AYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSF 368
Query: 839 DNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 898
A + A + V LP +LSGG +Q+ +A+ +
Sbjct: 369 CFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG----------RLSGGNQQKAVLAKML 418
Query: 899 LKNPAILLLDEATSALDAESECVLQEALERLMR-GRTTVLVAHRLSTIRGV-DCIGVVQD 956
L NP +L+LDE T +D ++ + + + +L + G ++V+ L+ + G+ D + V+ +
Sbjct: 419 LTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGE 478
Query: 957 GRI 959
G++
Sbjct: 479 GKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 54/245 (22%), Positives = 95/245 (38%), Gaps = 35/245 (14%)
Query: 100 IEFKNVTFSY------------------PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGK 141
IE N++ SY +V + S G+ V +G +G+GK
Sbjct: 1 IEVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGK 60
Query: 142 STVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA--TTILENILYG 199
+T + ++ P +G +++ L + + + + +F T + ++
Sbjct: 61 TTTLKILSGLLQPTSG-------EVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI 113
Query: 200 KPEATMAE---VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256
+A + A LL R QLS GQ+ R IA A+L
Sbjct: 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVR--QLSLGQRMRAEIAAALLHE 171
Query: 257 PKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVV--AHRLSTIRNV-DTVAVIQQGQ 313
P+IL LDE T LD ++ ++ L R T V+ +H + I + V VI +G+
Sbjct: 172 PEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGR 231
Query: 314 VVETG 318
++ G
Sbjct: 232 LLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 2e-07
Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 31/234 (13%)
Query: 766 FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI-- 823
+ +RAG+ L G G+G+S ++ L+ TAG+V +DGK ++++S R I
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGK---PIDIRSPRDAIRA 328
Query: 824 GLV------QQEPALFAASIFDNIAYG--KEGATEAEVVEAAR-AANVHGFVSALPNAYK 874
G++ + E + S+ DNI + ++ A N F+ +L K
Sbjct: 329 GIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSL--NIK 386
Query: 875 TPVGERG-VQLSGGQKQRIAIARAVLKNPAILLLDEATSALD--AESEC--VLQEALERL 929
TP E+ + LSGG +Q+ + R + ++ ++LLDE T +D A+ E V+ E
Sbjct: 387 TPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA-- 444
Query: 930 MRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 982
+G + V+ L + GV D I V+++GRI + ++R + L L
Sbjct: 445 -QGVAVLFVSSDLPEVLGVADRIVVMREGRIAGE------LAREQATERQALSL 491
|
Length = 501 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-07
Identities = 60/200 (30%), Positives = 100/200 (50%), Gaps = 23/200 (11%)
Query: 127 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ----IGLVN 182
G+ +A+VG +G+GKST++ ++ Y +AG +L K + + IG+++
Sbjct: 29 PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLG---KEVTFNGPKSSQEAGIGIIH 85
Query: 183 QEPALFAT-TILENILYGK-PEATMAEVEAAASAANAHSFITLLPNGYSTQ--VGERGVQ 238
QE L TI ENI G+ ++ A A + L +S+ VGE
Sbjct: 86 QELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGE---- 141
Query: 239 LSGGQKQRIAIARAMLKNPKILLLDEATSAL-DAGSES---IVQEALDRLMVGRTTVVVA 294
LS G++Q + IA+ + K++++DE T AL D +ES +++E + GR V ++
Sbjct: 142 LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ---GRGIVYIS 198
Query: 295 HRLSTIRNV-DTVAVIQQGQ 313
HRL I + D V V + GQ
Sbjct: 199 HRLKEIFEICDDVTVFRDGQ 218
|
Length = 501 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)
Query: 100 IEFKNVTFSYPS-RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTV---------VSLIE 149
+ +KN+ ++ P + + S + G A++G SG+GK+T+ +I
Sbjct: 4 LTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT 63
Query: 150 RFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEV 208
G +L++ + R G V Q+ T+ E + +
Sbjct: 64 -------GEILINGRPLDKNFQR----STGYVEQQDVHSPNLTVREALRF---------- 102
Query: 209 EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSA 268
SA RG LS Q++R+ I + P IL LDE TS
Sbjct: 103 ----SALL------------------RG--LSVEQRKRLTIGVELAAKPSILFLDEPTSG 138
Query: 269 LDAGSESIVQEALDRL-MVGRTTVVVAHRLS--TIRNVDTVAVIQQ-GQVV 315
LD+ + + L +L G+ + H+ S D + ++++ G+ V
Sbjct: 139 LDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTV 189
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 58/227 (25%), Positives = 96/227 (42%), Gaps = 41/227 (18%)
Query: 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF--YDPNAGHVLLDNVDIKTLQLRWLRDQ 177
+ SI G+ A++G +GSGKST+ +I Y G +L I L+ R
Sbjct: 27 NLSIN--KGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE-ERAH 83
Query: 178 IGL------------VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLP 225
+G+ V+ L + G PE + F+ ++
Sbjct: 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPEL------------DPLEFLEII- 130
Query: 226 NGYSTQVG------ERGVQ--LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 277
N VG R V SGG+K+R I + L + ++ +LDE S LD + I+
Sbjct: 131 NEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKII 190
Query: 278 QEALDRLM-VGRTTVVVAH--RLSTIRNVDTVAVIQQGQVVETGTHE 321
E +++LM + +++ H RL D V V+Q G++++TG E
Sbjct: 191 AEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237
|
Length = 252 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 57/243 (23%), Positives = 106/243 (43%), Gaps = 40/243 (16%)
Query: 767 NLRIRAGQSQALVGASGSGKS----SVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822
++ + G+ + LVG SGSGKS ++ + + + TA ++ D D+ RL+ + R
Sbjct: 27 SMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKL 86
Query: 823 IG----LVQQEPAL-------FAASIFDNIA-----------YGKEGATEAEVVEAARAA 860
+G ++ QEP + NI +G E++
Sbjct: 87 VGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIK 146
Query: 861 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 920
+ + + P +L+ G+ Q++ IA A+ P +L+ DE T++++ ++
Sbjct: 147 DHKDIMRSYPY-----------ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQA 195
Query: 921 VLQEALERL--MRGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPDGAYS 977
+ L RL T +L++H L I + D I V+ G+ VE ELV+ P Y+
Sbjct: 196 QIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTMPHHPYT 255
Query: 978 RLL 980
+ L
Sbjct: 256 QAL 258
|
Length = 330 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 4e-07
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL-MRGRTTVLV 938
+ LSGG+ QR+AIA A+L+N L DE ++ LD E A+ RL G+ T LV
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALV 127
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 10/127 (7%)
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVV--VAH 295
+L+ G+ Q++ IA A+ P++L+ DE T+A++ +++ + L RL T + ++H
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217
Query: 296 RLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA-GAYASLIRFQEMVRNR-DFANPSTRR 352
L + D + V+ GQ VET +EL+ Y Q ++R DF + +
Sbjct: 218 DLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYT-----QALIRAIPDFGSAMPHK 272
Query: 353 SRSTRLS 359
SR L
Sbjct: 273 SRLNTLP 279
|
Length = 330 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 5e-07
Identities = 64/261 (24%), Positives = 103/261 (39%), Gaps = 72/261 (27%)
Query: 119 RDFSIFFPAGKTVAVVGGSGSGKSTVV------SLIERFYDPNAGHVLLDNVD-IKTLQL 171
++ + P G V G SGSGKS+++ +L R + N D I+ L+
Sbjct: 12 KNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLH---LKKEQPGNHDRIEGLEH 68
Query: 172 RWLRDQIGLVNQEP-----------------------------ALFATTILENILY-GKP 201
D++ +++Q P + LE + Y GK
Sbjct: 69 I---DKVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLE-VRYKGK- 123
Query: 202 EATMAEVEAAASAANAHSFITLLPN-------------GYSTQVGERGVQLSGGQKQRIA 248
++A+V + A F +P GY ++G+ LSGG+ QRI
Sbjct: 124 --SIADV-LDMTVEEALEFFENIPKIARKLQTLCDVGLGY-IKLGQPATTLSGGEAQRIK 179
Query: 249 IARAMLK---NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVD 304
+A+ + K + +LDE T+ L + E L RL+ G T VV+ H L I+ D
Sbjct: 180 LAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCAD 239
Query: 305 TVAVI------QQGQVVETGT 319
+ + GQVV +GT
Sbjct: 240 WIIDLGPEGGDGGGQVVASGT 260
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 6e-07
Identities = 49/218 (22%), Positives = 85/218 (38%), Gaps = 57/218 (26%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKSS---VIALIERFYDPTAGKVMIDGKDIRRLNLKSLR 820
KDF+ ++ G+ ++G GSG S+ +A G + +G + +
Sbjct: 24 KDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKE-FAEKYP 82
Query: 821 LKIGLVQQE----PALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTP 876
+I V +E P L T E ++ A + FV
Sbjct: 83 GEIIYVSEEDVHFPTL----------------TVRETLDFALRCKGNEFV---------- 116
Query: 877 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTV 936
RG+ SGG+++R++IA A++ ++L D +T LD+ + ALE L RT
Sbjct: 117 ---RGI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSST------ALEILKCIRTMA 165
Query: 937 LVAHRLSTIRG-----------VDCIGVVQDGRIVEQG 963
V + +T D + V+ +GR + G
Sbjct: 166 DVL-KTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 6e-07
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IEL ++ Y + + KD +L I G LVG +G+GKS+++ LI +P G V
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQ 828
+KIG +Q
Sbjct: 58 TWGST-----------VKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 6e-07
Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 40/169 (23%)
Query: 128 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQE-PA 186
G+ V +VG +G GKST+++L++ + G QL W VNQE PA
Sbjct: 27 GQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG----NWQLAW-------VNQETPA 75
Query: 187 LFATTILENILYGKPEATMAEVEAAASAANA----HSFITL------------------L 224
L LE ++ G E ++EA AN H+ T+ L
Sbjct: 76 L-PQPALEYVIDGDRE--YRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASL 132
Query: 225 PNG--YSTQVGERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALD 270
+G +S + ER V SGG + R+ +A+A++ +LLLDE T+ LD
Sbjct: 133 LHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
|
Length = 638 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 7e-07
Identities = 59/253 (23%), Positives = 111/253 (43%), Gaps = 36/253 (14%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN-AGH 158
+E +N+T P D S G+ + V G G+G++ +V + Y G+
Sbjct: 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN 317
Query: 159 VLLDN--VDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAAN 216
V ++ VDI+ + +R I +V ++ I+ + GK S
Sbjct: 318 VFINGKPVDIRNPA-QAIRAGIAMVPEDRK--RHGIVPILGVGK--------NITLSVLK 366
Query: 217 AHSFITLLPNGYSTQVGERGVQ---------------LSGGQKQRIAIARAMLKNPKILL 261
+ F + Q+ +Q LSGG +Q+ +A+ +L NP++L+
Sbjct: 367 SFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLI 426
Query: 262 LDEATSALDAGSESIVQEALDRLMV-GRTTVVVAHRLSTIRNV-DTVAVIQQGQV----V 315
LDE T +D G++ + + +++L G +VV+ L+ + + D V VI +G++ V
Sbjct: 427 LDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486
Query: 316 ETG-THEELIAKA 327
T E+++A A
Sbjct: 487 NHALTQEQVLAAA 499
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 8e-07
Identities = 53/230 (23%), Positives = 105/230 (45%), Gaps = 21/230 (9%)
Query: 118 FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR-WLRD 176
RD S AG+ + + G G+G++ + + ++G +LLD ++ R ++
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334
Query: 177 QIGLV---NQEPALFAT-TILENILYG--KPEATMAEVEAAASAANAHSFITLL---PNG 227
I V + L +I ENI + + ++ A A +I L
Sbjct: 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394
Query: 228 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV- 286
+G LSGG +Q++ +AR + +PK+L+LDE T +D G+++ + + L
Sbjct: 395 PEQPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE 450
Query: 287 GRTTVVVAHRLSTIRNV-DTVAVIQQGQVV-----ETGTHEELIAKAGAY 330
G+ ++++ L + + D + V+++G++V E T E ++A A
Sbjct: 451 GKAILMISSELPELLGLSDRILVMREGRIVGELDREEATEEAIMAAAFGG 500
|
Length = 500 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 9e-07
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 12/149 (8%)
Query: 208 VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 267
++A + A A S + L QV + SGG + RIA+ARA+ P +LLLDE T+
Sbjct: 315 IDAYTAEARAASILAGLSFTPEMQV-KATKTFSGGWRMRIALARALFIEPDLLLLDEPTN 373
Query: 268 ALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA 327
LD + ++ L L +T +VV+H + V T + GQ +L+
Sbjct: 374 HLDLHAVLWLETYL--LKWPKTFIVVSHAREFLNTVVTDILHLHGQ--------KLVTYK 423
Query: 328 GAYASLIRF-QEMVRNRDFANPSTRRSRS 355
G Y + R +E ++N+ A S RSRS
Sbjct: 424 GDYDTFERTREEQLKNQQKAFESNERSRS 452
|
Length = 718 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 9e-07
Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 26/191 (13%)
Query: 756 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 815
SR + VF + + AG++ + G +G+GK++++ ++ +G++ IDGK R +
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 816 LKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGF-VSALPNAY 873
+ + P L A S +N+ + +HG +P +
Sbjct: 80 RSRF---MAYLGHLPGLKADLSTLENLHF---------------LCGLHGRRAKQMPGSA 121
Query: 874 KTPVGERGV------QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 927
VG G QLS GQK+R+A+AR L + LLDE + LD E ++ +
Sbjct: 122 LAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMIS 181
Query: 928 RLMRGRTTVLV 938
+RG LV
Sbjct: 182 AHLRGGGAALV 192
|
Length = 214 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 1e-06
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IE +N++ +Y + + +D S+ G + +VG +G+GKST++ LI +P+ G V
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 160 LLD 162
Sbjct: 58 TWG 60
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 2e-06
Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 51/224 (22%)
Query: 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQE 829
+R G+ L+G +G+GK++ ++ T+G + GK I N+ + +G Q
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGYCPQF 2020
Query: 830 PALFAASIFDNIAYGKE---------GATEAEVVEAA----RAANVHGFVSALPNAYKTP 876
A+ D++ G+E G E+ + A ++ + + L Y
Sbjct: 2021 DAI------DDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTY--- 2071
Query: 877 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTT 935
SGG K++++ A A++ P ++LLDE T+ +D ++ +L + ++R GR
Sbjct: 2072 --------SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAV 2123
Query: 936 VLVAHRLS-----------TIRGV-DCIGVVQ-------DGRIV 960
VL +H + ++G C+G +Q DG IV
Sbjct: 2124 VLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIV 2167
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 21/155 (13%)
Query: 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ---LRWLRD 176
D SI F + G +G GKS+++ +I P++G++ N +I + ++
Sbjct: 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH 77
Query: 177 QIGLVNQEPALFATTILENI-LYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGER 235
+GL T+ EN+ + + + + AA H + E+
Sbjct: 78 NLGLK------LEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-----------EK 120
Query: 236 GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALD 270
LS G ++ +AIAR + + LLDE + L
Sbjct: 121 CYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155
|
Length = 195 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 2e-06
Identities = 24/60 (40%), Positives = 33/60 (55%)
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRL 297
+LSGG+ QR+AIA A+L++ DE TS LD V + L G+ +VV H L
Sbjct: 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDL 271
|
Length = 590 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 3e-06
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 237 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVA 294
+ LSGG+ QR+AIA A+L+N L DE ++ LD A+ RL +T +VV
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 295 HRLSTIRNVDTVAVIQQGQ 313
H L+ + + + +G+
Sbjct: 130 HDLAVLDYLSDRIHVFEGE 148
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 3e-06
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 234 ERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR--TT 290
ER V LSGG+ QR+AIA A+ + + LLDE ++ LD IV + + R + T
Sbjct: 450 ERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTA 509
Query: 291 VVVAHRLSTI 300
+VV H + I
Sbjct: 510 LVVDHDIYMI 519
|
Length = 591 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 4e-06
Identities = 46/199 (23%), Positives = 92/199 (46%), Gaps = 24/199 (12%)
Query: 749 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808
+DF Y +P + + + + AG L G++G+GK++++ LI +P G+++ +
Sbjct: 6 ELDFDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER 62
Query: 809 KDIRRLNLKSLRLKIGLVQQE----PALFAASIFDNIAYG-KEGATEAEVVEAARAANVH 863
+ I++ +L + + ++ V P L ++ +N Y + E R
Sbjct: 63 QSIKK-DLCTYQKQLCFVGHRSGINPYL---TLRENCLYDIHFSPGAVGITELCR----- 113
Query: 864 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES-ECVL 922
+ +L + P G LS GQK+++A+ R + + LLDE ALD S ++
Sbjct: 114 --LFSLEHLIDYPCG----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTII 167
Query: 923 QEALERLMRGRTTVLVAHR 941
+ E +G +L +H+
Sbjct: 168 TKIQEHRAKGGAVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 883 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAH 940
+L+ G+ Q++ IA A+ P +L+ DE T+A++ ++ + L RL + T +L++H
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217
Query: 941 RLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 980
L + + D I V+ G+ VE ELV+ P Y++ L
Sbjct: 218 DLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYTQAL 258
|
Length = 330 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 4e-06
Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 22/173 (12%)
Query: 125 FPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQE 184
+ + ++G +G GK+T + ++ P+ G + ++ + D G V
Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRD- 80
Query: 185 PALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244
+L +I + E A +L +V E LSGG+
Sbjct: 81 -------LLSSITKDFYTHPYFKTEIA----KPLQIEQILDR----EVPE----LSGGEL 121
Query: 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG--RTTVVVAH 295
QR+AIA + K+ I LLDE ++ LD + + + R +T VV H
Sbjct: 122 QRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 7e-06
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 869 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALER 928
L + + PV E LSGG+ QR+AIA A+ + + LLDE ++ LD E ++ + + R
Sbjct: 445 LEDLLERPVDE----LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRR 500
Query: 929 LMRGR--TTVLVAHRLSTI 945
+ T ++V H + I
Sbjct: 501 FIENNEKTALVVDHDIYMI 519
|
Length = 591 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 8e-06
Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 11/111 (9%)
Query: 227 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEALDRLM 285
G+ TQ+G LSGG +Q++ I R +L P+IL+LDE T +D G++ I Q +
Sbjct: 384 GHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK 439
Query: 286 VGRTTVVVAHRLSTIRNV-DTVAVIQQGQV---VETG--THEELIAKAGAY 330
+ ++++ + + + D + V+ G V V+T T E++ A +
Sbjct: 440 KDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTTTQNEILRLASLH 490
|
Length = 491 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 65/229 (28%), Positives = 100/229 (43%), Gaps = 30/229 (13%)
Query: 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVV-SLIERFYDPNA-------GHVLLDN---V 164
I RD S+ G+ A++G +G+GKST++ +L A G V L+
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74
Query: 165 DIKTLQLRWLRDQIGLVNQEPALFATTILENILYGK-PEATMAEVEAAASAANAHSFITL 223
I +L LR + Q PA FA + E +L G+ P A A A + L
Sbjct: 75 AIDAPRLARLRAVLPQAAQ-PA-FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALAL 132
Query: 224 LPNGYSTQVGERGVQLSGGQKQRIAIARAMLK---------NPKILLLDEATSALDAGSE 274
G + VG LSGG+ R+ AR + + P+ LLLDE T+ALD +
Sbjct: 133 A--GATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQ 190
Query: 275 SIVQEALDRLM----VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT 319
+ + + RL +G +V L+ R+ D +A++ G +V G
Sbjct: 191 HRLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAIVAHGA 238
|
Length = 272 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 52/219 (23%), Positives = 100/219 (45%), Gaps = 52/219 (23%)
Query: 132 AVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN--VDIKTLQLRWLRDQIGLVNQEPALF- 188
A++G +G+GKST++ + Y ++G +L +D K+ + L + I +V+QE L
Sbjct: 28 ALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSK-EALENGISMVHQELNLVL 86
Query: 189 ATTILENI----------------LYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQV 232
++++N+ +Y +A E++ I + P
Sbjct: 87 QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELD-----------IDIDPR------ 129
Query: 233 GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-------SIVQEALDRLM 285
+ LS Q Q I IA+A N KI+++DE TS+L +E +I+++ +R
Sbjct: 130 -AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL---TEKEVNHLFTIIRKLKER-- 183
Query: 286 VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 323
G V ++H++ I + D + +++ GQ + T L
Sbjct: 184 -GCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221
|
Length = 491 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 1e-05
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 27/150 (18%)
Query: 780 GASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL-------KSLRLKIGLVQQEPAL 832
GA+G GKSS++ +I P++G + +I + +L LK+ +
Sbjct: 33 GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEM------- 85
Query: 833 FAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892
++F+N+ + E AE + AA +H F + E+ LS G ++ +
Sbjct: 86 ---TVFENLKFWSEIYNSAETLYAA----IHYF------KLHDLLDEKCYSLSSGMQKIV 132
Query: 893 AIARAVLKNPAILLLDEATSALDAESECVL 922
AIAR + + LLDE + L E+ +L
Sbjct: 133 AIARLIACQSDLWLLDEVETNLSKENRDLL 162
|
Length = 195 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-05
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 239 LSGGQKQRIAIARAMLK---NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVA 294
LSGG+ QR+ +A+ + K + +LDE T+ L + E L RL+ G T +V+
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 295 HRLSTIRNVDTVAVI------QQGQVVETGTHEELIAKAGAY 330
H L I+ D + + G++V +GT EE+ +Y
Sbjct: 883 HNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASY 924
|
Length = 935 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-05
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 232 VGERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL-DRLMVGRT 289
VG GV LS Q++R+ IA ++ NP I+ +DE TS LDA + +IV + + + GRT
Sbjct: 1012 VGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1071
Query: 290 TVVVAHRLS 298
V H+ S
Sbjct: 1072 VVCTIHQPS 1080
|
Length = 1470 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-05
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 16/86 (18%)
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE--------SIVQEALDRLMVGRT 289
+LSGG +Q+ +A+ +L NPKIL+LDE T +D G++ +VQ+ G
Sbjct: 405 RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-------GVA 457
Query: 290 TVVVAHRLSTIRNV-DTVAVIQQGQV 314
+V++ L + + D V V+ +G++
Sbjct: 458 IIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 64/258 (24%), Positives = 100/258 (38%), Gaps = 66/258 (25%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL-- 821
K+ ++ I G + G SGSGKSS+I + Y P + K + N +
Sbjct: 12 KNIDVDIPLGVLTCVTGVSGSGKSSLI--NDTLY-PAL-ARRLHLKKEQPGNHDRIEGLE 67
Query: 822 ---KIGLVQQEP--------ALFAASIFDNI-----------AYGKE-------GATEAE 852
K+ ++ Q P +FD I Y +E G + A+
Sbjct: 68 HIDKVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIAD 127
Query: 853 V----VEAARAANVHGFVSALPNAYKT------------PVGERGVQLSGGQKQRIAIAR 896
V VE A F +P + +G+ LSGG+ QRI +A+
Sbjct: 128 VLDMTVEEA-----LEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAK 182
Query: 897 AVLK---NPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCI- 951
+ K + +LDE T+ L L E L+RL+ +G T V++ H L I+ D I
Sbjct: 183 ELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWII 242
Query: 952 -----GVVQDGRIVEQGS 964
G G++V G+
Sbjct: 243 DLGPEGGDGGGQVVASGT 260
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 25/193 (12%)
Query: 111 SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ 170
SR + +F AG+ + V G +G+GK+T++ ++ +G + +D
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 171 LRWLRDQ-IGLVNQEPALFAT-TILENI-----LYGKPEATMAEVEAAASAANAHSFITL 223
R + + + P L A + LEN+ L+G+ A +A + + L
Sbjct: 80 ----RSRFMAYLGHLPGLKADLSTLENLHFLCGLHGR--------RAKQMPGSALAIVGL 127
Query: 224 LPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALD- 282
GY + QLS GQK+R+A+AR L + LLDE + LD ++V +
Sbjct: 128 --AGYEDTLVR---QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISA 182
Query: 283 RLMVGRTTVVVAH 295
L G +V H
Sbjct: 183 HLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 3e-05
Identities = 44/186 (23%), Positives = 87/186 (46%), Gaps = 24/186 (12%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE ++ + + ++ D + ++ G ++G +G+GKS++ +I P +G +
Sbjct: 323 IEAENLSKGFGDK---LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA--SIFDNIAYGKEGATEAEVVEAARAANV 862
I G+ + K+ V Q ++++ I+ G + + +RA
Sbjct: 380 KI-GETV----------KLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRA--- 425
Query: 863 HGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 921
+V +K ++ V QLSGG++ R+ +A+ + +LLLDE T+ LD E+
Sbjct: 426 --YVGRF--NFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRA 481
Query: 922 LQEALE 927
L+EAL
Sbjct: 482 LEEALL 487
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-05
Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 49/199 (24%)
Query: 104 NVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163
N+T + ++P +F + S+ F G ++G +G GKST + ++ +P+AG+V LD
Sbjct: 6 NITMQFGAKP---LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP 62
Query: 164 VDIKTLQLRWLR-DQIGLVNQ---------EPALFATTILENILYGKPEAT------MAE 207
+L LR DQ L+ + +Y PE + +A+
Sbjct: 63 ----NERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVAD 118
Query: 208 VEAAASAANAHSFITLLPNGYSTQ--VGE--RGV------------QLSGGQKQRIAIAR 251
+E F + +GY+ + GE GV +++ G K R+ +A+
Sbjct: 119 LEVK--------FAEM--DGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQ 168
Query: 252 AMLKNPKILLLDEATSALD 270
A+ NP ILLLDE T+ LD
Sbjct: 169 ALFSNPDILLLDEPTNNLD 187
|
Length = 530 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 4e-05
Identities = 47/187 (25%), Positives = 78/187 (41%), Gaps = 55/187 (29%)
Query: 768 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID-GKDIRRLNLKSLRLKIGLV 826
L I + LVG +G+GKS+++ ++ G+V++D G+ I +L RL
Sbjct: 24 LHIEDNERVCLVGRNGAGKSTLMKIL-------NGEVLLDDGRIIYEQDLIVARL----- 71
Query: 827 QQEPALFAA-SIFDNIAYGKEGATEA---------------------------EVVEAA- 857
QQ+P +++D +A G E E E ++
Sbjct: 72 QQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHN 131
Query: 858 ------RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT 911
R V + P+ + LSGG ++ A+ RA++ NP +LLLDE T
Sbjct: 132 LWQLENRINEVLAQLGLDPD---AALSS----LSGGWLRKAALGRALVSNPDVLLLDEPT 184
Query: 912 SALDAES 918
+ LD E+
Sbjct: 185 NHLDIET 191
|
Length = 635 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-05
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272
LSGG +Q++AIAR ++ PK+L+LDE T +D G
Sbjct: 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVG 429
|
Length = 501 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 4e-05
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 26/104 (25%)
Query: 865 FVSALPNAYKTPVG-------ERGV-------------------QLSGGQKQRIAIARAV 898
+V +P +K V ERG +LSGG+ QR+AIA A+
Sbjct: 168 YVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAAL 227
Query: 899 LKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRL 942
L++ DE TS LD + + L G+ ++V H L
Sbjct: 228 LRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDL 271
|
Length = 590 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 4e-05
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 876 PVGERGVQLSGGQKQRIAIARAVLK---NPAILLLDEATSALDAESECVLQEALERLM-R 931
+G+ LSGG+ QRI +A+ + K + +LDE T+ L + L E L+RL+ +
Sbjct: 822 RLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDK 881
Query: 932 GRTTVLVAHRLSTIRGVDCI------GVVQDGRIVEQGSHSEL 968
G T V++ H L I+ D I G G +V G+ E+
Sbjct: 882 GNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTVVASGTPEEV 924
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 237 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG-RTTVVVAH 295
V SGG+K+R I + + P++ +LDE+ S LD + IV + ++ L G R+ ++V H
Sbjct: 144 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTH 203
Query: 296 --RLSTIRNVDTVAVIQQGQVVETGTH 320
R+ D V V+ QG++V++G
Sbjct: 204 YQRILDYIKPDYVHVLYQGRIVKSGDF 230
|
Length = 248 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 8e-05
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 872 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD--AESECVLQEALERL 929
++T +G LSGG +Q++ I R +L P IL+LDE T +D A+ E + Q E
Sbjct: 384 GHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFE-IYQLIAELA 438
Query: 930 MRGRTTVLVAHRLSTIRGV-DCIGVVQDGR---IVE 961
+ + ++++ + + G+ D I V+ +G IV+
Sbjct: 439 KKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVD 474
|
Length = 491 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 8e-05
Identities = 42/197 (21%), Positives = 60/197 (30%), Gaps = 59/197 (29%)
Query: 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR 175
F + F G + G +GSGKST++
Sbjct: 9 SYFVPNDVTFGEGSLTIITGPNGSGKSTIL------------------------------ 38
Query: 176 DQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGER 235
D IGL A + K +A V A I
Sbjct: 39 DAIGLA----LGGAQSATRRRSGVKAGCIVAAVSA--------ELIFTRL---------- 76
Query: 236 GVQLSGGQKQRIAIARAM---LKNPKIL-LLDEATSALDAGSESIVQEALDRLMVGRTTV 291
QLSGG+K+ A+A + P+ L +LDE LD + EA+ +V V
Sbjct: 77 --QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134
Query: 292 VVA-HRLSTIRNVDTVA 307
+V H D +
Sbjct: 135 IVITHLPELAELADKLI 151
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 9e-05
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV-GRTTVVVAHR 296
LS G+ ++ + +A++ P +L+LDE LD S + E L L G T V+V +R
Sbjct: 135 YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNR 194
Query: 297 LSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327
I + V V+ + ETG EE++ +A
Sbjct: 195 FDEIPDFVQFAGVLADCTLAETGEREEILQQA 226
|
Length = 490 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 9e-05
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 52/204 (25%)
Query: 770 IRAGQSQALVGASGSGKSSVI-ALIERFYDP--TAGKVMIDGKDIRRLNLKSLRLKIGLV 826
++ G AL+GASG+GK++++ L ER T G +++G+ + S + IG V
Sbjct: 786 VKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYV 841
Query: 827 QQ-----------EPALFAA--------SIFDNIAYGKEGATEAEVVEAARAANVHGFVS 867
QQ E F+A S + + Y V E + + +
Sbjct: 842 QQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEY---------VEEVIKLLEMESYAD 892
Query: 868 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILL-LDEATSALDAESECVLQEAL 926
A+ VG G L+ Q++R+ I ++ P +LL LDE TS LD+++ ++
Sbjct: 893 AV-------VGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAW----SI 941
Query: 927 ERLMR-----GRTTVLVAHRLSTI 945
+LMR G+ + H+ S I
Sbjct: 942 CKLMRKLADHGQAILCTIHQPSAI 965
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 9e-05
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 230 TQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV-G 287
V +R + QLSGG+ QR+AIA A+ ++ DE +S LD + L
Sbjct: 130 RHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDD 189
Query: 288 RTTVVVAHRLS 298
+VV H L+
Sbjct: 190 NYVLVVEHDLA 200
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 55/236 (23%), Positives = 106/236 (44%), Gaps = 46/236 (19%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERF-YDPTA-GKVMIDGKDIR-RLNLKSLR 820
+D + + G+ G GSG++ ++ + F D A G++ ++GKDI R L +++
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCL--FGVDKRAGGEIRLNGKDISPRSPLDAVK 337
Query: 821 LKIGLV---QQEPALFAA-SIFDNIAY-------GKEGA-------TEAEVVEAARAANV 862
+ + +++ F SI N+A G +GA E E R
Sbjct: 338 KGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRE--- 394
Query: 863 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD--AESEC 920
L V + +LSGG +Q++ I++ + P +++ DE T +D A++E
Sbjct: 395 ------LLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAE- 447
Query: 921 VLQEALERLMR-----GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVS 970
+ ++MR G+ ++V+ L I V D I V +GR+ + ++ + +S
Sbjct: 448 -----IYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDMS 498
|
Length = 510 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 36/185 (19%)
Query: 765 DFNLRIRAG---QSQAL--VGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 819
+F L + G +S+ + +G +G GK++ I ++ P G + I+ + + K
Sbjct: 12 EFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV---SYKPQ 68
Query: 820 RLKI---GLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYK-T 875
+K G V+ +SI + F + + +
Sbjct: 69 YIKADYEGTVRD----LLSSITKD------------------FYTHPYFKTEIAKPLQIE 106
Query: 876 PVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL-MRGR 933
+ +R V +LSGG+ QR+AIA + K+ I LLDE ++ LD E + + + R
Sbjct: 107 QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNE 166
Query: 934 TTVLV 938
T V
Sbjct: 167 KTAFV 171
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 877 VGERGVQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRT 934
VG GV LS Q++R+ IA ++ NP+I+ +DE TS LDA + ++ + + GRT
Sbjct: 1012 VGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1071
Query: 935 TVLVAHRLS 943
V H+ S
Sbjct: 1072 VVCTIHQPS 1080
|
Length = 1470 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 239 LSGGQKQRIAIARAMLKNPK--ILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAH 295
LSGG+ QR+ +A + P + +LDE ++ L + + E + L+ +G T +++ H
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147
Query: 296 RLSTIRNVDTV 306
L + + D +
Sbjct: 148 NLDVLSSADWI 158
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 34/217 (15%)
Query: 118 FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY---DPNAGHVLLDNVDIKTLQLRWL 174
FR+ S+ AG+ + + G G+G++ L E Y G ++L+ +I L
Sbjct: 279 FRNISLEVRAGEILGLAGVVGAGRT---ELAETLYGLRPARGGRIMLNGKEINALSTA-Q 334
Query: 175 RDQIGLV-----NQEPALF----------ATTILENILYGKPEATMAEVEAAASAANAHS 219
R GLV Q L+ A T + KP A +E A N
Sbjct: 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALN--- 391
Query: 220 FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 279
I N LSGG +Q++ IA+ + +P++L++DE T +D + + + +
Sbjct: 392 -IKF--NHAEQAAR----TLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQ 444
Query: 280 ALDRLMVGRTTVV-VAHRLSTIRNV-DTVAVIQQGQV 314
+ + V+ ++ L I + D V V+ QG++
Sbjct: 445 LIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 26/98 (26%), Positives = 57/98 (58%), Gaps = 8/98 (8%)
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHR 296
+LSGG +Q++ I++ + P++++ DE T +D G+++ + + + +L G+ ++V+
Sbjct: 409 ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSE 468
Query: 297 LSTIRNV-DTVAVIQQGQVVE------TGTHEELIAKA 327
L I V D +AV +G++ + + EE++A A
Sbjct: 469 LPEIITVCDRIAVFCEGRLTQILTNRDDMSEEEIMAWA 506
|
Length = 510 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 57/240 (23%), Positives = 114/240 (47%), Gaps = 35/240 (14%)
Query: 743 GEI--ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT 800
GE+ E+R++ P P + D + +R G+ + G G+G++ ++ + Y P
Sbjct: 256 GEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY-PG 314
Query: 801 A--GKVMIDGKDIR-RLNLKSLRLKIGLVQQE-------PALFAASIFDNI--AYGKEGA 848
G++ IDGK ++ R +++ I +V ++ P + + NI A
Sbjct: 315 RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVM---GVGKNITLAALDRFT 371
Query: 849 TEAEVVEAARAANVHGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLKNPAILLL 907
+ + +AA + + L KT E + +LSGG +Q+ +A+ +L NP IL+L
Sbjct: 372 GGSRIDDAAELKTILESIQRL--KVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILIL 429
Query: 908 DEATSALD--AESECVLQEALERLM-----RGRTTVLVAHRLSTIRGV-DCIGVVQDGRI 959
DE T +D A+ E + +L+ +G ++++ L + G+ D + V+ +G++
Sbjct: 430 DEPTRGIDVGAKYE------IYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 2e-04
Identities = 57/202 (28%), Positives = 88/202 (43%), Gaps = 51/202 (25%)
Query: 84 IQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKST 143
I P R D+V IE +N++ S+ R ++ D S P G V ++G +G+GKST
Sbjct: 312 IFIPPGPRLGDKV---IEAENLSKSFGDR---LLIDDLSFSLPPGGIVGIIGPNGAGKST 365
Query: 144 VVSLIERFYDPNAGHVLL-DNVDIKTLQLRWLRDQIGLVNQ-----EPALFATTILENIL 197
+ +I P++G + + + V ++ V+Q +P T+ E I
Sbjct: 366 LFKMITGQEQPDSGTIKIGETV------------KLAYVDQSRDALDP---NKTVWEEIS 410
Query: 198 YGKPEATMAEVE----AAASAANAHSFITLLPNGYSTQ--VGERGVQLSGGQKQRIAIAR 251
G + E A N F G Q VG LSGG++ R+ +A+
Sbjct: 411 GGLDIIKVGNREIPSRAYVGRFN---F-----KGGDQQKKVG----VLSGGERNRLHLAK 458
Query: 252 AMLK---NPKILLLDEATSALD 270
LK N +LLLDE T+ LD
Sbjct: 459 -TLKQGGN--VLLLDEPTNDLD 477
|
Length = 556 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALD 270
LSGG ++ A+ RA++ NP +LLLDE T+ LD
Sbjct: 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
|
Length = 635 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-04
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 869 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALER 928
L V + LSGG+ QR+AIA + ++ + LLDE ++ LD E + +A+ R
Sbjct: 443 LERLLDKNVKD----LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR 498
Query: 929 LMRGR-TTVLV 938
+ R T LV
Sbjct: 499 IAEEREATALV 509
|
Length = 590 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE----SIVQEALDRLMVGRTTVVV 293
+LSGG+ QR+AIA A+L++ + DE +S LD +++E + G+ +VV
Sbjct: 213 ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED---GKYVIVV 269
Query: 294 AHRLSTI 300
H L+ +
Sbjct: 270 EHDLAVL 276
|
Length = 591 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-04
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 884 LSGGQKQRIAIARAVLK---NPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVA 939
LSGG+ QR+ +A+ + K + +LDE T+ L + L E L RL+ +G T +++
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 940 HRLSTIRGVDCI------GVVQDGRIVEQGSHSELVSRPD---GAY 976
H L I+ D I G G IV G+ E+ G Y
Sbjct: 883 HNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKY 928
|
Length = 935 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 46/202 (22%), Positives = 77/202 (38%), Gaps = 37/202 (18%)
Query: 763 FKDFNLRI-RAGQSQALVGASGSGKSSVIALIE--------RFYDPTAGKVMIDG----- 808
FK L + R GQ LVG +G GKS+ + ++ +F DP ++D
Sbjct: 15 FKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSE 74
Query: 809 -----KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVH 863
+ ++K + K V P + + + E E+V+
Sbjct: 75 LQNYFTKLLEGDVKVIV-KPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLEL---- 129
Query: 864 GFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 922
V +R + QLSGG+ QR+AIA A+ ++ DE +S LD +
Sbjct: 130 -----------RHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNA 178
Query: 923 QEALERLMR-GRTTVLVAHRLS 943
+ L ++V H L+
Sbjct: 179 ARLIRELAEDDNYVLVVEHDLA 200
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 3e-04
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR--TTVVVAHR 296
LSGG+ QR+AIA + ++ + LLDE ++ LD V +A+ R+ R T +VV H
Sbjct: 454 LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHD 513
Query: 297 LSTI 300
+ I
Sbjct: 514 IYMI 517
|
Length = 590 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-04
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 27/108 (25%)
Query: 865 FVSALPNAYKTPVG-------ERGV-------------------QLSGGQKQRIAIARAV 898
+V +P K VG ERG +LSGG+ QR+AIA A+
Sbjct: 169 YVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAAL 228
Query: 899 LKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVA-HRLSTI 945
L++ + DE +S LD + L V+V H L+ +
Sbjct: 229 LRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVL 276
|
Length = 591 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-04
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 228 YSTQVGE---RGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271
+T+VG RGV SGG+++R++IA A L KI D AT LD+
Sbjct: 198 RNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWDNATRGLDS 242
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 884 LSGGQKQRIAIARAVLKNP--AILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAH 940
LSGG+ QR+ +A + P + +LDE ++ L + L E ++ L+ G T +L+ H
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147
Query: 941 RLSTIRGVDCI------GVVQDGRIVEQG 963
L + D I G++V G
Sbjct: 148 NLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 4e-04
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 857 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 916
ARAA++ +S P + SGG + RIA+ARA+ P +LLLDE T+ LD
Sbjct: 322 ARAASILAGLSFTPEMQV----KATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDL 377
Query: 917 ESECVLQEALERLMRGRTTVLVAH 940
+ L+ L L +T ++V+H
Sbjct: 378 HAVLWLETYL--LKWPKTFIVVSH 399
|
Length = 718 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-04
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 14/98 (14%)
Query: 239 LSGGQKQRIAIARAMLK---NPKILLLDEATSALDAGSESIVQ--EALDRLM-VGRTTVV 292
LSGG+ QRI +A+ + K + +LDE T+ L + I + E L RL+ G T VV
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLH--FDDIKKLLEVLQRLVDKGNTVVV 887
Query: 293 VAHRLSTIRNVDTVAVI------QQGQVVETGTHEELI 324
+ H L I+ D + + G VV +GT EE+
Sbjct: 888 IEHNLDVIKTADYIIDLGPEGGDGGGTVVASGTPEEVA 925
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 5e-04
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 877 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTV 936
V E + SGG+K R+ +A V + P +LLLDE T+ LD + L EAL G V
Sbjct: 424 VTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-EG-ALV 481
Query: 937 LVAHRLSTIRG-VDCIGVVQDGRI 959
+V+H +R D + +V DG++
Sbjct: 482 VVSHDRHLLRSTTDDLYLVHDGKV 505
|
Length = 638 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 231 QVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTT 290
+V E + SGG+K R+ +A + + P +LLLDE T+ LD + EAL +
Sbjct: 423 KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL--IDFEGAL 480
Query: 291 VVVAHRLSTIRN-VDTVAVIQQGQV 314
VVV+H +R+ D + ++ G+V
Sbjct: 481 VVVSHDRHLLRSTTDDLYLVHDGKV 505
|
Length = 638 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 7e-04
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG-RTTVLVAH 940
V SGG+K+R I + + P + +LDE+ S LD ++ ++ + + L G R+ ++V H
Sbjct: 144 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTH 203
Query: 941 --RLSTIRGVDCIGVVQDGRIVEQGSHS 966
R+ D + V+ GRIV+ G +
Sbjct: 204 YQRILDYIKPDYVHVLYQGRIVKSGDFT 231
|
Length = 248 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 8e-04
Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 35/196 (17%)
Query: 738 VETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFY 797
++ GE+ L+ + + P DV F LR G+ + G G+G++ ++ ++
Sbjct: 249 LDKAPGEVRLKVDNLSGPGVNDV----SFTLR--KGEILGVSGLMGAGRTELMKVLYGAL 302
Query: 798 DPTAGKVMIDGKDIRRLN---------------LKSLRLKIGL-VQQEPALFAASIFDNI 841
T+G V +DG ++ + K L +G+ V++ +L A F
Sbjct: 303 PRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRA 362
Query: 842 AYGKEGATEAEVVEA-ARAANVHGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVL 899
+ A E + V R N+ KTP E+ + LSGG +Q++AIAR ++
Sbjct: 363 GGSLKHADEQQAVSDFIRLFNI-----------KTPSMEQAIGLLSGGNQQKVAIARGLM 411
Query: 900 KNPAILLLDEATSALD 915
P +L+LDE T +D
Sbjct: 412 TRPKVLILDEPTRGVD 427
|
Length = 501 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 239 LSGGQKQRIA-IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV-GRTTVV-VAH 295
LS GQ QR+A I RA++K+P +L+LDE LD + +V+ +D L+ G T ++ V+H
Sbjct: 402 LSWGQ-QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSH 460
|
Length = 490 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 30/191 (15%)
Query: 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG--------KDIRRLNLKSLRL 821
I GQ LVG +G GKS+++AL++ G G ++ L +L
Sbjct: 24 INPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEY 83
Query: 822 KIG----LVQQEPALFAASIFDN---IA--YGKEGATEAEVVEAARAANVHGFVSALPNA 872
I Q E L A+ ++ IA +GK A +A + + A+ +HG
Sbjct: 84 VIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL------G 137
Query: 873 YKTPVGERGVQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR 931
+ ER V SGG + R+ +A+A++ +LLLDE T+ LD ++ V+ LE+ ++
Sbjct: 138 FSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDA--VIW--LEKWLK 193
Query: 932 GR--TTVLVAH 940
T +L++H
Sbjct: 194 SYQGTLILISH 204
|
Length = 638 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 42/209 (20%)
Query: 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 801
R +E+ ++ + + P +FK+ NL + AG+ A++G +G GK++++ + +P +
Sbjct: 317 RNALEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDS 373
Query: 802 GKVMIDGKDIRRLNLK-SLRLKIGLVQQEPAL-FAA--SIFDNIA-YGKEGATEAEVVEA 856
G V K S IG Q+ A F ++FD ++ + +EG E +A
Sbjct: 374 GTV------------KWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDE----QA 417
Query: 857 ARAANVHGFVSALPNAYKTPV-----GERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT 911
R S + K V GE+G L G + +++ P +L++DE T
Sbjct: 418 VRGTLGRLLFSQ--DDIKKSVKVLSGGEKGRMLFG---------KLMMQKPNVLVMDEPT 466
Query: 912 SALDAESECVLQEALERLMRGRTTVLVAH 940
+ +D ES L ALE G T + V+H
Sbjct: 467 NHMDMESIESLNMALE-KYEG-TLIFVSH 493
|
Length = 530 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 16/60 (26%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E +N+T + + P +F++ ++ AG+ +A++G +G GK+T++ + +P++G V
Sbjct: 320 LEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
|
Length = 530 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALI--ERFYDPTAGKVMIDGKDIRRL 814
+ + NL +R G+ A++G +GSGKS++ A + Y+ T G V GKD+ L
Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLEL 70
|
Length = 248 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 856 AARAANVHGFVSALPNAYKTPVGE---RGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 912
A A+V+ L + T VG RGV SGG+++R++IA A L I D AT
Sbjct: 181 AKHIADVYMATYGLSHTRNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWDNATR 238
Query: 913 ALDAESECVLQEALERLMR-GRTTVLVA 939
LD+ + AL+ TT LVA
Sbjct: 239 GLDSATALEFIRALKTSANILDTTPLVA 266
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 56/237 (23%), Positives = 103/237 (43%), Gaps = 33/237 (13%)
Query: 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179
D S+ G + +VG +GSGKST+ ++I P G V + ++ + + G
Sbjct: 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-EVSVIAI-----SAG 95
Query: 180 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQ- 238
L Q T +ENI + E A F +++GE Q
Sbjct: 96 LSGQ------LTGIENIEFKMLCMGFKRKEIKAMTPKIIEF---------SELGEFIYQP 140
Query: 239 ---LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM----VGRTTV 291
S G + ++ + + NP IL++DE AL G ++ Q+ LD++ +T
Sbjct: 141 VKKYSSGMRAKLGFSINITVNPDILVIDE---ALSVGDQTFAQKCLDKIYEFKEQNKTIF 197
Query: 292 VVAHRLSTIRNVDT-VAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFAN 347
V+H L +R T +A I+ G++ + G ++++ K A+ + + + ++F N
Sbjct: 198 FVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDFKKKSKAEQKEFRN 254
|
Length = 264 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 13/209 (6%)
Query: 101 EFKNVTFSYP-SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVS-LIERFYDPNAGH 158
++N+T+ + +I + + G A++G SG+GK+T+++ L ER G
Sbjct: 761 HWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERV---TTGV 817
Query: 159 VLLDN--VDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAA 215
+ + V+ + L + R IG V Q+ T T+ E++ + V +
Sbjct: 818 ITGGDRLVNGRPLDSSFQR-SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKME 876
Query: 216 NAHSFITLLP-NGYSTQ-VGERGVQLSGGQKQRIAIARAMLKNPKILL-LDEATSALDAG 272
I LL Y+ VG G L+ Q++R+ I ++ PK+LL LDE TS LD+
Sbjct: 877 YVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQ 936
Query: 273 SESIVQEALDRLM-VGRTTVVVAHRLSTI 300
+ + + + +L G+ + H+ S I
Sbjct: 937 TAWSICKLMRKLADHGQAILCTIHQPSAI 965
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL 281
LSGG+K R+ + M++ P +L++DE T+ +D ESI E+L
Sbjct: 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDM--ESI--ESL 477
|
Length = 530 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 40/177 (22%), Positives = 72/177 (40%), Gaps = 54/177 (30%)
Query: 777 ALVGASGSGKSSVIALIERFY------DPTAGKVMIDGKDIR--------RLNLKSLRLK 822
+VG +G+GK+++I + Y P + D K IR +L ++ K
Sbjct: 26 LIVGQNGAGKTTIIEAL--KYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGK 83
Query: 823 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGV 882
+ + A I +N+ + +G + +++ RG
Sbjct: 84 KYTITRSLA-----ILENVIFCHQGESNWPLLD-----------------------MRG- 114
Query: 883 QLSGGQKQ------RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR 933
+ SGG+K R+A+A N IL LDE T+ LD E+ ++E+L ++ R
Sbjct: 115 RCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEEN---IEESLAEIIEER 168
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 883 QLSGGQKQ------RIAIARAVLKNPAI--LLLDEATSALDAESECVLQEALERL-MRGR 933
LSGG++ R+A++ + + L LDE LD E L E LE L GR
Sbjct: 815 TLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGR 874
Query: 934 TTVLVAH 940
++++H
Sbjct: 875 QIIIISH 881
|
Length = 908 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 987 | |||
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-185 Score=1641.04 Aligned_cols=974 Identities=53% Similarity=0.863 Sum_probs=885.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001980 2 AKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKP 81 (987)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~ 81 (987)
+.+...|+++++.+.++++.+|||+.++..+..++|++++++++++.....+++..+.+..+..+++|+.+|++.++..|
T Consensus 253 ~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~ 332 (1228)
T KOG0055|consen 253 FKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKP 332 (1228)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCC
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE
Q 001980 82 SIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL 161 (987)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~ 161 (987)
.+++............+.|+++||+|+||.+++.++|+|+||+|++|+.+||||||||||||++++|.|+|+|++|+|.+
T Consensus 333 ~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~i 412 (1228)
T KOG0055|consen 333 SIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLI 412 (1228)
T ss_pred CCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEE
Confidence 76544323333445678899999999999999889999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCCh
Q 001980 162 DNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSG 241 (987)
Q Consensus 162 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSg 241 (987)
||.|++.++.+|+|.+||.|.|+|.||++||+|||.||+|+++.+++.++|+.+++++++..+|+|++|.+||+|.+|||
T Consensus 413 dG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSG 492 (1228)
T KOG0055|consen 413 DGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSG 492 (1228)
T ss_pred cCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChH
Q 001980 242 GQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHE 321 (987)
Q Consensus 242 GqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~ 321 (987)
||||||||||||++||+||||||||||||+++++.++++|++..+|+|.|+|+||++++++||+|++|++|+|+|.|+|+
T Consensus 493 GQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ 572 (1228)
T KOG0055|consen 493 GQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHD 572 (1228)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCC
Q 001980 322 ELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKN 401 (987)
Q Consensus 322 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (987)
||++..|.|.++.+.|+.....+..+.+.+.......+...+... ....+.. ..........+ .++.+.....
T Consensus 573 ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~-----~~~~~~~-~~~~~~~~~~~-~e~~~~~~~~ 645 (1228)
T KOG0055|consen 573 ELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSS-----PSLSRGS-NRSNLLSVKPE-GEDPEEPVSE 645 (1228)
T ss_pred HHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhcccccccc-----ccccCCc-ccccccccccc-cccccccccc
Confidence 999999999999998876543221000000000000000000000 0000000 00000000000 0000000011
Q ss_pred CCCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHH
Q 001980 402 PAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYL 481 (987)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (987)
.....++++++++.+|.|++++++++++++.|+..|++++.++.++..+...+++.+......|.++|+++++...++.+
T Consensus 646 ~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~ 725 (1228)
T KOG0055|consen 646 EDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNF 725 (1228)
T ss_pred ccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12566789999999999999999999999999999999999999999888666555555555699999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 482 IQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAF 561 (987)
Q Consensus 482 ~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 561 (987)
++.++|...+++++.++|.++|++++++++.|||.++|. |.+.+|+.+|...++..+...+..+++++.+++.++++.|
T Consensus 726 ~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf 804 (1228)
T KOG0055|consen 726 LQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAF 804 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHH
Q 001980 562 IVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQT 641 (987)
Q Consensus 562 ~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~ 641 (987)
+++|++++++++++|++++..+.+.+++....++......+......|++++++||++|+.|+++.+.|.+.++...+..
T Consensus 805 ~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~ 884 (1228)
T KOG0055|consen 805 IYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSS 884 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 642 LRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFST 721 (987)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~ 721 (987)
.+++.+.++.+++++.+.++.+++.+|+|.+|+..|.+++.+++.+++++.+.+..+++..++.|++.++..++.+++++
T Consensus 885 ~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i 964 (1228)
T KOG0055|consen 885 FKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEI 964 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC
Q 001980 722 LDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 801 (987)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~ 801 (987)
+++++..+++.+.+...++.+|+|+|+||+|+||.+|+.+||+|+||+|++||++||||||||||||++.+|.|||||.+
T Consensus 965 ~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~ 1044 (1228)
T KOG0055|consen 965 LDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDA 1044 (1228)
T ss_pred hcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 99988766654333344568899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCC
Q 001980 802 GKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERG 881 (987)
Q Consensus 802 G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G 881 (987)
|.|+|||+||+++++++||++|++|.|||.||++||||||.||.++++++|+.+|++.|++|+||.+||+||||+|||+|
T Consensus 1045 G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG 1124 (1228)
T KOG0055|consen 1045 GKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERG 1124 (1228)
T ss_pred CeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCccc
Confidence 99999999999999999999999999999999999999999996668999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEE
Q 001980 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVE 961 (987)
Q Consensus 882 ~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive 961 (987)
.+||||||||||||||++||||||||||||||||.++|+.||++|++...|||+|+|||||+||++||.|+|+++|+|+|
T Consensus 1125 ~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE 1204 (1228)
T KOG0055|consen 1125 VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVE 1204 (1228)
T ss_pred CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHhcCCCchHHHHHHhhh
Q 001980 962 QGSHSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 962 ~Gt~~eLl~~~~g~f~~l~~~q~ 984 (987)
+|||++|+++ +|.|++|++.|.
T Consensus 1205 ~GtH~~L~~~-~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1205 QGTHDELLAK-RGIYFRLVQLQS 1226 (1228)
T ss_pred cccHHHHHhC-CCchHHHhhhcc
Confidence 9999999995 999999999885
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-165 Score=1507.79 Aligned_cols=927 Identities=24% Similarity=0.346 Sum_probs=754.8
Q ss_pred HHHHHHHHH-HHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCc
Q 001980 20 LVFWYAGVF-IRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNG 98 (987)
Q Consensus 20 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (987)
..+.++++. ..++.+++..+|+++.++..+..|+..+|..+..+.++++|.+|+.+|+..++. +............+.
T Consensus 439 ~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~-~~~~~~~~~~~~~~~ 517 (1381)
T KOG0054|consen 439 SVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEEL-DPDSVERSPDEAGEN 517 (1381)
T ss_pred HHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-CccccccCCCCCCCc
Confidence 334556666 567889999999999988888999999999999999999999999999987543 222211112223345
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|.+|+|++....+.|+||||+|++|+++||||++|||||+||.+|+|++++.+|++.++| .+
T Consensus 518 ~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-------------si 584 (1381)
T KOG0054|consen 518 AIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-------------SV 584 (1381)
T ss_pred eEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-------------eE
Confidence 69999999999874455689999999999999999999999999999999999999999999998 69
Q ss_pred EEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 179 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 179 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
+||||+||+|++||||||+||.| .+.++++++.+.|.+.+|++.+|.|+.|+|||+|.+|||||||||+||||+|+|+|
T Consensus 585 aYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~ad 663 (1381)
T KOG0054|consen 585 AYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDAD 663 (1381)
T ss_pred EEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCC
Confidence 99999999999999999999987 46788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHH-HHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHHHHH
Q 001980 259 ILLLDEATSALDAGS-ESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 337 (987)
Q Consensus 259 illlDEpts~LD~~~-~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 337 (987)
|||||||+||+|+|+ .+.+.++++.+.++||+|+|||+++++++||+|++|++|+|.+.|+++|+++....+.++....
T Consensus 664 IYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~ 743 (1381)
T KOG0054|consen 664 IYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEE 743 (1381)
T ss_pred EEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhcc
Confidence 999999999999996 5556678878888999999999999999999999999999999999999998888887773322
Q ss_pred HhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCchHHHHHHHHhCC
Q 001980 338 EMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAP 417 (987)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (987)
....+........+.. ..+...... .........+... ..........+.+++..+...+..|..|.+.
T Consensus 744 ~~~~~~~~~~~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a 812 (1381)
T KOG0054|consen 744 ESEQEEEASEKDLESG---ESSRESESR-------SLESLSSEEEKSK-DEKEEEDKLVQEEERETGKVSWSVYKKYIKA 812 (1381)
T ss_pred chhhcccccccccccc---ccccchhhh-------hhhhhcccccccc-cccchhhHHHHHHHHhcCEeeHHHHHHHHHh
Confidence 2111111000000000 000000000 0000000000000 0000001111223345666666666666554
Q ss_pred chHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 418 EWPYS--IMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLT 495 (987)
Q Consensus 418 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (987)
.++++ .+.+++.+...++.....+|++.|.+.-...... .....+|+++|.++++...++.+++.+.+...+.+++
T Consensus 813 ~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~--~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS 890 (1381)
T KOG0054|consen 813 AGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT--TVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKAS 890 (1381)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 2233444444455555555555544321110000 0346689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001980 496 TRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTY 575 (987)
Q Consensus 496 ~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~ 575 (987)
++||++|+++++|+||+|||+ +|.|+|+|||++|++.+|..+|..+..++++++.+++.++++.+..| +++++++
T Consensus 891 ~~Lh~~ml~~Ilrapm~FFdt--TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P---~fli~~~ 965 (1381)
T KOG0054|consen 891 RKLHDKLLNSILRAPMSFFDT--TPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTP---WFLIAII 965 (1381)
T ss_pred HHHHHHHHHHHHhCcchhcCC--CCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhH---HHHHHHH
Confidence 999999999999999999996 79999999999999999999999999999999999999998888877 4666777
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001980 576 PLLVLANFAQQLSLKGFAGDTAKAH----AKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGIL 651 (987)
Q Consensus 576 pl~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (987)
|+.+++++++.+|++. +|+.+|.. +|..+|++|+++|+.|||||+.+++|.+++.+..|.+.+..+.......|+
T Consensus 966 pl~v~~~~~~~~Y~~t-sReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWl 1044 (1381)
T KOG0054|consen 966 PLGVIYYFVQRYYLAT-SRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWL 1044 (1381)
T ss_pred HHHHHHHHHHHHHHHH-hHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 8888888888777776 77777764 789999999999999999999999999999999999998877655444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Q 001980 652 FGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPD 731 (987)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~ 731 (987)
..-..++..+....+..+.+.. ..+.++.|.+...+.+.+.....+...+....++++.+.|+||+.+|.+.++|.+..
T Consensus 1045 a~Rle~ig~~~v~~~al~~vl~-~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~ 1123 (1381)
T KOG0054|consen 1045 AVRLELLGNLVVLIAALFAVLL-PSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLE 1123 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCC
Confidence 4333333333322222222211 122266888888889999999999999999999999999999999999977662211
Q ss_pred CCC--CCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCc
Q 001980 732 DPD--AEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK 809 (987)
Q Consensus 732 ~~~--~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~ 809 (987)
.+. +++.||.+|+|+|+|++++|.++ .++|||||||+|+||||||||||||||||||+++|+|+.+|.+|+|.|||+
T Consensus 1124 ~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgv 1202 (1381)
T KOG0054|consen 1124 IEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGV 1202 (1381)
T ss_pred CcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCe
Confidence 111 34457999999999999999654 347999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 810 DIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 810 di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
||+++++++||+++++|||||+||+||+|+|||| ..+++|++||+||++|+++++|+++|+|||++|.|+|.|||.|||
T Consensus 1203 dI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDP-f~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQR 1281 (1381)
T KOG0054|consen 1203 DISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDP-FDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQR 1281 (1381)
T ss_pred ecccccHHHHHhcCeeeCCCCceecCccccccCc-ccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHH
Confidence 9999999999999999999999999999999985 567999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHh
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl 969 (987)
|++||||||||++|||+||||||++|++||..||++||+.|++||||+||||++||+|||||+|||+|+|+|+|+|++|+
T Consensus 1282 QLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll 1361 (1381)
T KOG0054|consen 1282 QLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELL 1361 (1381)
T ss_pred HHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHhh
Q 001980 970 SRPDGAYSRLLQLQ 983 (987)
Q Consensus 970 ~~~~g~f~~l~~~q 983 (987)
++++|.|++++...
T Consensus 1362 ~~~~S~f~~~l~~~ 1375 (1381)
T KOG0054|consen 1362 SDKDSLFSSLLKEA 1375 (1381)
T ss_pred hCCcchHHHHHHHH
Confidence 99999998776554
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-149 Score=1434.17 Aligned_cols=976 Identities=32% Similarity=0.539 Sum_probs=796.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHcC--------ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 4 GLGLGCTYGIACMSWALVFWYAGVFIRNG--------VTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLME 75 (987)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~ 75 (987)
+...++..++.++++++++|||++++..| .+++|.+++++++.+.....+..+.+.+..++.+..|++|+.+
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ 360 (1466)
T PTZ00265 281 SLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYE 360 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888889999999999999985 5788998888877777677777788889999999999999999
Q ss_pred HHhcCCCCCCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC
Q 001980 76 IIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 155 (987)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~ 155 (987)
+++.+++.+... .....+. ...|+++||+|+|+++++.++|+|+||+|++||++||+||||||||||+++|+|+|+|+
T Consensus 361 ii~~~~~~~~~~-~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~ 438 (1466)
T PTZ00265 361 IINRKPLVENND-DGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT 438 (1466)
T ss_pred HHcCCCCCCCCC-CCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC
Confidence 998776532211 1111121 23699999999998654456999999999999999999999999999999999999999
Q ss_pred ccEEEE-CCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCC---------------------------------
Q 001980 156 AGHVLL-DNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP--------------------------------- 201 (987)
Q Consensus 156 ~G~i~~-~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~--------------------------------- 201 (987)
+|+|.+ +|.++++++..++|++|+||+|+|.||++||+|||.+|.+
T Consensus 439 ~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (1466)
T PTZ00265 439 EGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKC 518 (1466)
T ss_pred CCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccc
Confidence 999999 5799999999999999999999999999999999999742
Q ss_pred ------------------------CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 202 ------------------------EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 202 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
..+++++.++++.+++++++..+|+|++|.+|++|.+|||||||||+|||||+++|
T Consensus 519 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P 598 (1466)
T PTZ00265 519 AGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNP 598 (1466)
T ss_pred cchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 13457889999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCccccCCEEEEEeCC-----------------------
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQG----------------------- 312 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~~l~~G----------------------- 312 (987)
+|||||||||+||+++++.+++.|.++. +|+|+|+||||++.++.||+|++|++|
T Consensus 599 ~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~ 678 (1466)
T PTZ00265 599 KILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENN 678 (1466)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccc
Confidence 9999999999999999999999999985 489999999999999899999999986
Q ss_pred ------------------------EEEEecChHHHHH-hhhhHHHHHHHHHhhhccccCC--CCcccccccccccccccc
Q 001980 313 ------------------------QVVETGTHEELIA-KAGAYASLIRFQEMVRNRDFAN--PSTRRSRSTRLSHSLSTK 365 (987)
Q Consensus 313 ------------------------~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 365 (987)
+|+|+|+|+||++ .+|.|+.+...|.......... ..................
T Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (1466)
T PTZ00265 679 NKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGY 758 (1466)
T ss_pred cccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccccccccc
Confidence 5999999999998 6899999987764432111000 000000000000000000
Q ss_pred cccccccc--cccccccccCCCCcccccccccccc-c---------CCCCCchHHHHHHHHhCCchHHHHHHHHHHHHHH
Q 001980 366 SLSLRSGS--LRNLSYSYSTGADGRIEMVSNAETD-R---------KNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSG 433 (987)
Q Consensus 366 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (987)
........ ....................+.... + ..+.....+.+++++.++.++.++++++++++.+
T Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (1466)
T PTZ00265 759 DPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIALSILVAG 838 (1466)
T ss_pred ccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0000000000000000000000000 0 0011111334445555555556778888888999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Q 001980 434 FIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGW 513 (987)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~f 513 (987)
++.++++++++.+++.++.. .........|.+++++++++..++.+++.++..+.+.++..++|.++|++++++|++|
T Consensus 839 ~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~ 916 (1466)
T PTZ00265 839 GLYPVFALLYAKYVSTLFDF--ANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISF 916 (1466)
T ss_pred HHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999998876532 1122234467777888888888999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 001980 514 FDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFA 593 (987)
Q Consensus 514 fd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~ 593 (987)
||..++++|++++|+++|++.++..+...+..++..++.++++++++++++|.+++++++++|++...+....+......
T Consensus 917 fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 996 (1466)
T PTZ00265 917 FDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKD 996 (1466)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99877899999999999999999999999999999999999999999999999988776555444333222211111000
Q ss_pred -H-H-------------HHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 594 -G-D-------------TAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFA 658 (987)
Q Consensus 594 -~-~-------------~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (987)
+ . ..+........+.|++.|+++||+|+.|+++.++|.+..+...+...+.....+++.++.+.+
T Consensus 997 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1076 (1466)
T PTZ00265 997 VEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSA 1076 (1466)
T ss_pred HHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 112245567889999999999999999999999999999999888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCC-
Q 001980 659 LHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEP- 737 (987)
Q Consensus 659 ~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~- 737 (987)
.++..++++|+|.+++..|.++++.++.++.++.+...++..+....+++.++..+.+|++++++.+++.+..+.....
T Consensus 1077 ~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~ 1156 (1466)
T PTZ00265 1077 QLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRI 1156 (1466)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCccccc
Confidence 9999999999999999999999999998887776666678888899999999999999999999876543211111111
Q ss_pred --CCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC----------------
Q 001980 738 --VETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP---------------- 799 (987)
Q Consensus 738 --~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p---------------- 799 (987)
++...|.|+|+||+|+||++|+.+||+|+||+|+|||++||||+||||||||+++|+|||+|
T Consensus 1157 ~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~ 1236 (1466)
T PTZ00265 1157 KNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDM 1236 (1466)
T ss_pred ccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccc
Confidence 12346789999999999877666899999999999999999999999999999999999999
Q ss_pred --------------------------------------CCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHh
Q 001980 800 --------------------------------------TAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI 841 (987)
Q Consensus 800 --------------------------------------~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL 841 (987)
++|+|+|||+||+++++++||++|+||||||+||+|||||||
T Consensus 1237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI 1316 (1466)
T PTZ00265 1237 TNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENI 1316 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHH
Confidence 699999999999999999999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q 001980 842 AYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 921 (987)
Q Consensus 842 ~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~ 921 (987)
.+|.++++|+|+++|++.+++++||.+||+||||.|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.
T Consensus 1317 ~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~ 1396 (1466)
T PTZ00265 1317 KFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKL 1396 (1466)
T ss_pred hcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeC----CEE-EEecChhHHhcCCCchHHHHHHhh
Q 001980 922 LQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQD----GRI-VEQGSHSELVSRPDGAYSRLLQLQ 983 (987)
Q Consensus 922 I~~~l~~~~--~~~TvI~IaHRl~ti~~~D~Iivl~~----G~i-ve~Gt~~eLl~~~~g~f~~l~~~q 983 (987)
|+++|++.. +++|+|+||||++++++||+|+||++ |++ +|.|+|+||+++++|.|++||+.|
T Consensus 1397 I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1397 IEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred HHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 999999984 68999999999999999999999999 995 499999999985589999999876
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-148 Score=1437.00 Aligned_cols=925 Identities=23% Similarity=0.299 Sum_probs=712.2
Q ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCC
Q 001980 18 WALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVN 97 (987)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 97 (987)
++.++++|++++.+|.++++.+|+++.++..+..|+..++..+..+.++++|++||.++++.++.... . .. ......
T Consensus 536 ~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~-~-~~-~~~~~~ 612 (1622)
T PLN03130 536 LVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL-P-NP-PLEPGL 612 (1622)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-c-CC-cccCCC
Confidence 34566889999999999999999998888888899999999999999999999999999976543211 1 00 011112
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-cEEEECCEeCCCCCHHHHhc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA-GHVLLDNVDIKTLQLRWLRD 176 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~-G~i~~~g~~~~~~~~~~~~~ 176 (987)
..|+++|++|+|+.+++.++|+|+||+|++|++++|+||||||||||+++|+|+++|++ |+|.+.|
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~------------- 679 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG------------- 679 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC-------------
Confidence 46999999999985444568999999999999999999999999999999999999999 9998654
Q ss_pred ceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 177 QIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
+|+||+|+||+|++||||||+||.|. ++++++++++.|++.++++.+|+|++|.+||+|.+|||||||||+||||+|++
T Consensus 680 ~Iayv~Q~p~LfngTIreNI~fg~~~-d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~ 758 (1622)
T PLN03130 680 TVAYVPQVSWIFNATVRDNILFGSPF-DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSN 758 (1622)
T ss_pred eEEEEcCccccCCCCHHHHHhCCCcc-cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999874 68899999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHH-HHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHHH
Q 001980 257 PKILLLDEATSALDAGSESIVQ-EALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 335 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~-~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 335 (987)
|+||||||||||||+++++.+. +++.+..+++|+|+|||+++.++.||+|++|++|+|+++|++++++++.+.|..+..
T Consensus 759 ~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~ 838 (1622)
T PLN03130 759 SDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLME 838 (1622)
T ss_pred CCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHH
Confidence 9999999999999999887665 567777789999999999999999999999999999999999999988888887765
Q ss_pred HHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCchHHHHHHHHh
Q 001980 336 FQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLN 415 (987)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (987)
.+....+........... ......... ................. ...... ...+++..+...+..|.+|.
T Consensus 839 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~---~~~e~~~~g~v~~~vy~~Y~ 908 (1622)
T PLN03130 839 NAGKMEEYVEENGEEEDD--QTSSKPVAN----GNANNLKKDSSSKKKSK-EGKSVL---IKQEERETGVVSWKVLERYK 908 (1622)
T ss_pred hccccccccccccccccc--ccccccccc----ccccccccccccccccc-ccchhh---hhHHHHhcCccCHHHHHHHH
Confidence 432211110000000000 000000000 00000000000000000 000000 01122223434455555443
Q ss_pred CC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 416 AP--EWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGEN 493 (987)
Q Consensus 416 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (987)
+. .++.+.+.+++.++..++.....+|++.|.+... ........|+++|++++++..++.+++.+++.+.+.+
T Consensus 909 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~-----~~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~ 983 (1622)
T PLN03130 909 NALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGT-----PKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLY 983 (1622)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 1222222222222333333333344444332111 1112234678889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001980 494 LTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILG 573 (987)
Q Consensus 494 ~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~ 573 (987)
++.++|.+++++++++|++|||+ +++|+++|||++|++.+|..++..+..++..++.+++.++++++++|... ++
T Consensus 984 ~~~~L~~~l~~~ll~~p~~ffd~--~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~---~~ 1058 (1622)
T PLN03130 984 AAKRLHDAMLGSILRAPMSFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISL---WA 1058 (1622)
T ss_pred HHHHHHHHHHHHHHcCCHHHhcc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 99999999999999999999985 79999999999999999999999999999999999988888877776332 33
Q ss_pred HHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001980 574 TYPLLVLANFAQQLS---LKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGI 650 (987)
Q Consensus 574 ~~pl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (987)
++|+.++++..+.++ .+...+......++..+++.|+++|++|||+|+++++|.+.+.+..+...+..+.......+
T Consensus 1059 ~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~w 1138 (1622)
T PLN03130 1059 IMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRW 1138 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333333333 23333333344578899999999999999999999999988888877766554433322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001980 651 LFGISQFALHASEALILWYGVHLVGKGV-ST-----FSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDR 724 (987)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~g~~lv~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~ 724 (987)
+.....++. .+++.+.+...+..+. .. .+.+..++.+.......+..+......++..+.+++|+.++++.
T Consensus 1139 l~~~l~~~~---~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~ 1215 (1622)
T PLN03130 1139 LAIRLETLG---GLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDL 1215 (1622)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 222222211 1122222333333321 11 22333333444455566666777777888999999999999987
Q ss_pred cCCCCCCC--CCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCc
Q 001980 725 STRIDPDD--PDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802 (987)
Q Consensus 725 ~~~~~~~~--~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G 802 (987)
+++.+... ..+.+.+|.+|.|+|+||+|+|+++ .++||+|+||+|+||||||||||||||||||+++|+|+|+|++|
T Consensus 1216 ~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G 1294 (1622)
T PLN03130 1216 PSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1294 (1622)
T ss_pred CCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCc
Confidence 65542211 1112234667999999999999643 24699999999999999999999999999999999999999999
Q ss_pred eEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCC
Q 001980 803 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGV 882 (987)
Q Consensus 803 ~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~ 882 (987)
+|+|||+||+++++++||++|++|||||+||+|||||||+++. +++|+|+|+||++++++++|.++|+||||+|||+|.
T Consensus 1295 ~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~ 1373 (1622)
T PLN03130 1295 RILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGE 1373 (1622)
T ss_pred eEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCC
Confidence 9999999999999999999999999999999999999999875 689999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEe
Q 001980 883 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 962 (987)
Q Consensus 883 ~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~ 962 (987)
+|||||||||||||||+|+|+|||||||||+||.+||+.||++|++.+++||+|+||||++|+++||||+||++|+|+|+
T Consensus 1374 nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~ 1453 (1622)
T PLN03130 1374 NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEF 1453 (1622)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhcCCCchHHHHHHhhh
Q 001980 963 GSHSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 963 Gt~~eLl~~~~g~f~~l~~~q~ 984 (987)
|+|+||+++++|.|++|++.+.
T Consensus 1454 Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1454 DTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred CCHHHHHhCCCCHHHHHHHHcC
Confidence 9999999987899999997764
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-146 Score=1424.27 Aligned_cols=922 Identities=22% Similarity=0.298 Sum_probs=710.9
Q ss_pred HHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCc
Q 001980 19 ALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNG 98 (987)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (987)
+.++++|++++.+|.+|++.+|+++.++..+..|+..++..+..+.++++|++||.++++.+++..... ........
T Consensus 537 ~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~---~~~~~~~~ 613 (1495)
T PLN03232 537 VTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN---PPLQPGAP 613 (1495)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc---CCcCCCCC
Confidence 335688999999999999999999988888889999999999999999999999999998654321111 01111224
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++|+|+.+++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+. .+|++|
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~~~~I 681 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VIRGSV 681 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------EecCcE
Confidence 69999999999854445799999999999999999999999999999999999999998763 235689
Q ss_pred EEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 179 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 179 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
+||+|+||+|++||||||+||.+ .++++++++++.|++.++++.+|+|++|.+||+|.+|||||||||+||||+|++|+
T Consensus 682 ayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 760 (1495)
T PLN03232 682 AYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1495)
T ss_pred EEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999986 57889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHH-HHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHHHHH
Q 001980 259 ILLLDEATSALDAGSESIVQE-ALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 337 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 337 (987)
||||||||||||+++++++.+ ++....+++|+|+|||+++.++.||+|++|++|+|+++|+|++++++++.|.++...+
T Consensus 761 IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~ 840 (1495)
T PLN03232 761 IYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENA 840 (1495)
T ss_pred EEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhc
Confidence 999999999999999887755 5666667999999999999999999999999999999999999999888888877554
Q ss_pred HhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCchHHHHHHHHhCC
Q 001980 338 EMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAP 417 (987)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (987)
....+.....+.. . .... ..... ........... ....+...... .+++++..+...+..|.+|.+.
T Consensus 841 ~~~~~~~~~~~~~--~---~~~~-~~~~~--~~~~~~~~~~~--~~~~~~~~~~~---~~~e~~~~g~v~~~vy~~y~~~ 907 (1495)
T PLN03232 841 GKMDATQEVNTND--E---NILK-LGPTV--TIDVSERNLGS--TKQGKRGRSVL---VKQEERETGIISWNVLMRYNKA 907 (1495)
T ss_pred ccccccccccccc--c---cccc-ccccc--ccccccccccc--ccccccchhhh---hhHHHHhcCcccHHHHHHHHHH
Confidence 3211110000000 0 0000 00000 00000000000 00000000000 0111222344445555555443
Q ss_pred ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 418 EW--PYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLT 495 (987)
Q Consensus 418 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (987)
.. +.+.+.+++.++..+......+|++.|. ...........+|+++|++++++..++.+++.+++.+.+.+++
T Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~-----~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~ 982 (1495)
T PLN03232 908 VGGLWVVMILLVCYLTTEVLRVSSSTWLSIWT-----DQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAA 982 (1495)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2222222222222222222223333222 1111001224578899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001980 496 TRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTY 575 (987)
Q Consensus 496 ~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~ 575 (987)
.++|++++++++++|++|||+ +++|+++||+++|++.+|..++..+..++..++.++++++++++.++.. +++++
T Consensus 983 ~~lr~~l~~~ll~~p~~ff~~--~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~---~~~~~ 1057 (1495)
T PLN03232 983 KRLHDAMLNSILRAPMLFFHT--NPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTIS---LWAIM 1057 (1495)
T ss_pred HHHHHHHHHHHHcCCeeeeCc--CCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 999999999999999999985 7999999999999999999999999999998888888887777766533 22334
Q ss_pred HHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001980 576 PLLVLANFAQQLS---LKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILF 652 (987)
Q Consensus 576 pl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (987)
|+.++++..+..+ .+...+......++..+++.|+++|++|||+|+.+++|.+++.+..+...+..+.......+..
T Consensus 1058 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~ 1137 (1495)
T PLN03232 1058 PLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLT 1137 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333333322 2333444445567889999999999999999999999999888887777665543333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-ccCC----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 001980 653 GISQFALHASEALILWYGVHLVG-KGVS----T-FSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRST 726 (987)
Q Consensus 653 ~~~~~~~~~~~~~~~~~g~~lv~-~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 726 (987)
..... +..++..+.+...+. .+.+ . .+.+..++.+......++..+...+.+++..+.+++|+.++++.++
T Consensus 1138 ~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~ 1214 (1495)
T PLN03232 1138 IRLET---LGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPS 1214 (1495)
T ss_pred HHHHH---HHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 11111 112222222333333 2322 1 1222223344444556777888888899999999999999998765
Q ss_pred CCCCCCC--CCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceE
Q 001980 727 RIDPDDP--DAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804 (987)
Q Consensus 727 ~~~~~~~--~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I 804 (987)
+.+...+ ...+.+|.+|.|+|+||+|+|+++ .++||+|+||+|+||||||||||||||||||+++|+|+|+|++|+|
T Consensus 1215 e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I 1293 (1495)
T PLN03232 1215 EATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRI 1293 (1495)
T ss_pred cccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceE
Confidence 5332111 112224667899999999999643 2469999999999999999999999999999999999999999999
Q ss_pred EECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCC
Q 001980 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQL 884 (987)
Q Consensus 805 ~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 884 (987)
+|||+||+++++++||++|++|||||+||+|||||||+++. +++|+|+|+|++.++++++|.++|+||||+|||+|.+|
T Consensus 1294 ~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~L 1372 (1495)
T PLN03232 1294 MIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENF 1372 (1495)
T ss_pred EECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCC
Confidence 99999999999999999999999999999999999999875 69999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecC
Q 001980 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGS 964 (987)
Q Consensus 885 SgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt 964 (987)
||||||||||||||+|+|+|||||||||+||++||+.||++|++.+++||+|+||||++|+++||||+||++|+|+|+|+
T Consensus 1373 SgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt 1452 (1495)
T PLN03232 1373 SVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDS 1452 (1495)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhcCCCchHHHHHHhhh
Q 001980 965 HSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 965 ~~eLl~~~~g~f~~l~~~q~ 984 (987)
|+||+++++|.|++|++.+.
T Consensus 1453 ~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1453 PQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred HHHHHhCCCCHHHHHHHHhC
Confidence 99999987789999998764
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-142 Score=1389.48 Aligned_cols=935 Identities=22% Similarity=0.270 Sum_probs=725.8
Q ss_pred HHHHHHHH--cCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCccE
Q 001980 23 WYAGVFIR--NGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNI 100 (987)
Q Consensus 23 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i 100 (987)
.++.+.+. ++.++++.+|+++.++..+..|+..++..+..+.+++.|++||.++++.+++...........+.....+
T Consensus 558 ~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i 637 (1522)
T TIGR00957 558 TFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSI 637 (1522)
T ss_pred HHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCCCCcE
Confidence 45566665 3678999999988777777889999999999999999999999999976543211000000001112369
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 001980 101 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180 (987)
Q Consensus 101 ~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 180 (987)
+++|++|+|++. +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| +|+|
T Consensus 638 ~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~y 703 (1522)
T TIGR00957 638 TVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAY 703 (1522)
T ss_pred EEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEE
Confidence 999999999743 34689999999999999999999999999999999999999999999997 6999
Q ss_pred EcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 001980 181 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKIL 260 (987)
Q Consensus 181 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~il 260 (987)
|+|+||+|++||+|||.||.+ .+.+++.++++.|++.+++..+|+|++|.+|++|.+|||||||||+||||+|++|+|+
T Consensus 704 v~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~il 782 (1522)
T TIGR00957 704 VPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY 782 (1522)
T ss_pred EcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999976 3456778888888889999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHh---hhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHHHHH
Q 001980 261 LLDEATSALDAGSESIVQEALDR---LMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 337 (987)
Q Consensus 261 llDEpts~LD~~~~~~i~~~l~~---~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 337 (987)
|||||||+||+++++.+.+.+.+ +.+++|+|+|||+++.+..||+|++|++|+++++|+++++.++.+.|.++...+
T Consensus 783 lLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 862 (1522)
T TIGR00957 783 LFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTY 862 (1522)
T ss_pred EEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhh
Confidence 99999999999999999998854 456899999999999999999999999999999999999998888887776543
Q ss_pred HhhhccccCCCC-cc---cccccc--cccccc-----cccccc---cccccccc-c-c--cc-cCCCCcccccccccccc
Q 001980 338 EMVRNRDFANPS-TR---RSRSTR--LSHSLS-----TKSLSL---RSGSLRNL-S-Y--SY-STGADGRIEMVSNAETD 398 (987)
Q Consensus 338 ~~~~~~~~~~~~-~~---~~~~~~--~~~~~~-----~~~~~~---~~~~~~~~-~-~--~~-~~~~~~~~~~~~~~~~~ 398 (987)
............ .. ...... .++... ...... ........ . . +. ................+
T Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1522)
T TIGR00957 863 APDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEA 942 (1522)
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHH
Confidence 221111000000 00 000000 000000 000000 00000000 0 0 00 00000000000000011
Q ss_pred cCCCCCchHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHH
Q 001980 399 RKNPAPDGYFLRLLKLNAP-EWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAV 477 (987)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (987)
+.+..+...+..|.+|.+. ++...++.+++.++..++.....+|++.|.+.... ........+|+.+|++++++..
T Consensus 943 e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~---~~~~~~~~~~~~iy~~l~i~~~ 1019 (1522)
T TIGR00957 943 DKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMV---NGTQNNTSLRLSVYGALGILQG 1019 (1522)
T ss_pred HHHhcCcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cCCCCCcchHHHHHHHHHHHHH
Confidence 1222333344444444332 23332232333333333333444455444321100 0011123456778888999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 478 VAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSF 557 (987)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~ 557 (987)
++.++..+++.+.+.+++.++|++++++++++|++|||. +++|+++|||++|++.+|..++..+..++..++.+++.+
T Consensus 1020 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~l 1097 (1522)
T TIGR00957 1020 FAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER--TPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGAL 1097 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888889999999999999999999999999999985 799999999999999999999999999999999999998
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHH
Q 001980 558 IVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVP 637 (987)
Q Consensus 558 ~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~ 637 (987)
+++++.+|.+++++++++++++++..++.+..+...+......++..+++.|+++|+++||+|+++++|.+++.+..+..
T Consensus 1098 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~ 1177 (1522)
T TIGR00957 1098 IVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDEN 1177 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHH
Confidence 88888887655544444333333333333333333444445567889999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 638 QSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVG-KGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVG 716 (987)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 716 (987)
++..+.......++.....++.. +++++++...+. .+.++.|.+..++.+......++..+...+.++...+.+++
T Consensus 1178 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~e 1254 (1522)
T TIGR00957 1178 QKAYYPSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVE 1254 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776655555554444333322 233334444443 57899999998888988889999999999999999999999
Q ss_pred HHHHHhcccCCCCC--CCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHh
Q 001980 717 SVFSTLDRSTRIDP--DDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIE 794 (987)
Q Consensus 717 ri~~~~~~~~~~~~--~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~ 794 (987)
|+.++++.+++.+. +.....+.+|.+|.|+|+||+|+|+++. .+||+||||+|+||||||||||||||||||+++|+
T Consensus 1255 Ri~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~ 1333 (1522)
T TIGR00957 1255 RLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLF 1333 (1522)
T ss_pred HHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 99999977654321 1111122346779999999999997542 36999999999999999999999999999999999
Q ss_pred ccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCC
Q 001980 795 RFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYK 874 (987)
Q Consensus 795 rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gld 874 (987)
|+|+|++|+|+|||+||+++++++||++|++|||||+||+||||+||++. ++++|+|+|+|++.++++++|.++|+|||
T Consensus 1334 rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~-~~~sdeei~~al~~a~l~~~I~~lp~GLd 1412 (1522)
T TIGR00957 1334 RINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF-SQYSDEEVWWALELAHLKTFVSALPDKLD 1412 (1522)
T ss_pred cCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc-cCCCHHHHHHHHHHcCcHHHHhhCccCCC
Confidence 99999999999999999999999999999999999999999999999854 47999999999999999999999999999
Q ss_pred CccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEE
Q 001980 875 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVV 954 (987)
Q Consensus 875 t~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl 954 (987)
|+|||+|.+|||||||||||||||+|+|+|||||||||+||.+||+.||++|++.+++||||+||||++|+.+||||+||
T Consensus 1413 t~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVl 1492 (1522)
T TIGR00957 1413 HECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVL 1492 (1522)
T ss_pred ceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCEEEEecChhHHhcCCCchHHHHHHhh
Q 001980 955 QDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983 (987)
Q Consensus 955 ~~G~ive~Gt~~eLl~~~~g~f~~l~~~q 983 (987)
|+|+|+|+|+|+||+++ +|.|++|++..
T Consensus 1493 d~G~IvE~G~~~eLl~~-~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1493 DKGEVAEFGAPSNLLQQ-RGIFYSMAKDA 1520 (1522)
T ss_pred ECCEEEEECCHHHHHhC-CCHHHHHHHHc
Confidence 99999999999999998 79999999864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-136 Score=1330.80 Aligned_cols=930 Identities=20% Similarity=0.260 Sum_probs=706.0
Q ss_pred HHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC---C--C--------C
Q 001980 22 FWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ---D--P--------T 88 (987)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~--~--------~ 88 (987)
+.++++.+.++.+|++.+|+++.++..+..|+..++..+..+.++.+|++||.+||+.++.... + . .
T Consensus 486 ~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~ 565 (1560)
T PTZ00243 486 VVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHS 565 (1560)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhcccccccc
Confidence 3567888899999999999999988888899999999999999999999999999976431000 0 0 0
Q ss_pred C--C---------------Cc---------------------------CCCCCccEEEEeEEEECCCC------------
Q 001980 89 N--G---------------RC---------------------------LDEVNGNIEFKNVTFSYPSR------------ 112 (987)
Q Consensus 89 ~--~---------------~~---------------------------~~~~~~~i~~~~~~~~y~~~------------ 112 (987)
. . .. .......+.++|+++.++..
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (1560)
T PTZ00243 566 TACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGG 645 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccccccc
Confidence 0 0 00 00011246677777765310
Q ss_pred -------------------------CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC
Q 001980 113 -------------------------PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK 167 (987)
Q Consensus 113 -------------------------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~ 167 (987)
.+.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++
T Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~----- 720 (1560)
T PTZ00243 646 GHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE----- 720 (1560)
T ss_pred cccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-----
Confidence 12358999999999999999999999999999999999999999999875
Q ss_pred CCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHH
Q 001980 168 TLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247 (987)
Q Consensus 168 ~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRi 247 (987)
++|+||+|+||+|++||+|||.++.+. +.+++.++++.+++.++++.+|+|++|.+|++|.+|||||||||
T Consensus 721 --------~~i~yv~Q~~~l~~~Tv~enI~~~~~~-~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRv 791 (1560)
T PTZ00243 721 --------RSIAYVPQQAWIMNATVRGNILFFDEE-DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARV 791 (1560)
T ss_pred --------CeEEEEeCCCccCCCcHHHHHHcCChh-hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHH
Confidence 379999999999999999999998653 44567788888899999999999999999999999999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHH-HHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQE-ALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+||||||++|++||||||||+||+++++.+.+ ++....+|+|+|+|||+++.+..||+|++|++|+++++|+++++++.
T Consensus 792 aLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~ 871 (1560)
T PTZ00243 792 SLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT 871 (1560)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 99999999999999999999999998777765 44444568999999999999999999999999999999999999875
Q ss_pred hhhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCch
Q 001980 327 AGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDG 406 (987)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (987)
+.|..+........+........+.................... .............+...... ...+++..+..
T Consensus 872 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l---~~~e~~~~g~v 946 (1560)
T PTZ00243 872 -SLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAK-QEGNAEGGDGAALDAAAGRL---MTREEKASGSV 946 (1560)
T ss_pred -hHHHHHHHhhcccccccccccccccccccccccccccccccccc-cccccccccccccccccchh---hhHHHHhcCcc
Confidence 34555543221111000000000000000000000000000000 00000000000000000000 01111222333
Q ss_pred HHHHHHHHhCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001980 407 YFLRLLKLNAPE--WPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQH 484 (987)
Q Consensus 407 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (987)
.|..|..|.+.. +.+.+..++..++..++.....+|++.|.. .. .......|+.+|+++.++..++.+++.
T Consensus 947 ~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~-----~~--~~~~~~~~l~~y~~~~~~~~~~~~l~~ 1019 (1560)
T PTZ00243 947 PWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWST-----RS--FKLSAATYLYVYLGIVLLGTFSVPLRF 1019 (1560)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cc--cCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 444444443321 111111111112222222223333333221 11 112234577788888777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001980 485 YFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVE 564 (987)
Q Consensus 485 ~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (987)
+.....+.+.+.++|+++|++++++|+.|||. ++.|+++|||++|++.+|..++..+..++..++.++++++++++.+
T Consensus 1020 ~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~--~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~ 1097 (1560)
T PTZ00243 1020 FLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT--TPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQ 1097 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhhccC--CCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888889999999999999999999995 7999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHH
Q 001980 565 WRVSLLILGTYPLLVLANFAQQ---LSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQT 641 (987)
Q Consensus 565 ~~l~l~~l~~~pl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~ 641 (987)
|.+. ++++|+.+++.++.. +..+...+......++..+++.|+++|+++||+|++++.+.++|.+..+...+..
T Consensus 1098 p~~~---~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~ 1174 (1560)
T PTZ00243 1098 PFVL---VALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCS 1174 (1560)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 7433 333444433333333 3333333444455678899999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 642 LRRSLTAGILFGISQFALHASEALILWYGVHLV--GKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVF 719 (987)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~ 719 (987)
+.......+......++..+..+++.+++.... ..+.++++.+..++.+......++..+...+.+++..+.+++|+.
T Consensus 1175 ~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~ 1254 (1560)
T PTZ00243 1175 YLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLL 1254 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666666655555555444444444444333 344567887777777777888899999999999999999999999
Q ss_pred HHhcccCCCC-CC------------------------CCC-C---CCCCCccccEEEEeEEEECCCCCCccceeeeeEEE
Q 001980 720 STLDRSTRID-PD------------------------DPD-A---EPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRI 770 (987)
Q Consensus 720 ~~~~~~~~~~-~~------------------------~~~-~---~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I 770 (987)
++++..++++ +. ++. . .+.++..|.|+|+||+|+|+++ .++||+||||+|
T Consensus 1255 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I 1333 (1560)
T PTZ00243 1255 YYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRI 1333 (1560)
T ss_pred HHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEE
Confidence 9986433211 00 000 0 1122356899999999999754 346999999999
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCH
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATE 850 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd 850 (987)
+||||||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+||||+||+++ .+++|
T Consensus 1334 ~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~-~~~sd 1412 (1560)
T PTZ00243 1334 APREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPF-LEASS 1412 (1560)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcc-cCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875 57999
Q ss_pred HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001980 851 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN-PAILLLDEATSALDAESECVLQEALERL 929 (987)
Q Consensus 851 ~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~-p~ILlLDEaTS~LD~~te~~I~~~l~~~ 929 (987)
+|+|+|+++++++++|.++|+||||+|||+|.||||||||||||||||+++ |+|||||||||+||++||+.|+++|++.
T Consensus 1413 eeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~ 1492 (1560)
T PTZ00243 1413 AEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSA 1492 (1560)
T ss_pred HHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999996 8999999999999999999999999999
Q ss_pred cCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhhh
Q 001980 930 MRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 930 ~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q~ 984 (987)
+++||||+||||++|+.+||+|+||++|+|+|+|+|+||+++++|.|++|++.+.
T Consensus 1493 ~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1493 FSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred CCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999877899999998764
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-134 Score=1309.89 Aligned_cols=935 Identities=19% Similarity=0.269 Sum_probs=696.4
Q ss_pred HHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCC
Q 001980 17 SWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLG-QSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDE 95 (987)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~ 95 (987)
.++.++++++|.+.++ ++++.+|+++.++..+..|+. .++..+..+.++.+|++||.+||..++.. .... ..
T Consensus 316 ~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~-~~~~-----~~ 388 (1490)
T TIGR01271 316 FFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYK-TLEY-----NL 388 (1490)
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-cccc-----cC
Confidence 3445566777777654 688999998877777767764 68999999999999999999999765421 1110 01
Q ss_pred CCccEEEEeEEEECCCCC-------------------------------CccceeeeeEEEeCCcEEEEEcCCCccHHHH
Q 001980 96 VNGNIEFKNVTFSYPSRP-------------------------------DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTV 144 (987)
Q Consensus 96 ~~~~i~~~~~~~~y~~~~-------------------------------~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTL 144 (987)
....++++|++|.|+... ..++|+|+||+|++|++++|+||||||||||
T Consensus 389 ~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTL 468 (1490)
T TIGR01271 389 TTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSL 468 (1490)
T ss_pred CCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHH
Confidence 123589999999995310 1358999999999999999999999999999
Q ss_pred HHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhC
Q 001980 145 VSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLL 224 (987)
Q Consensus 145 l~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (987)
+++|+|+++|++|+|.++| +|+||+|+||+|++||+|||+||.+ .+.+++.++++.|++.+++..+
T Consensus 469 l~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l 534 (1490)
T TIGR01271 469 LMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALF 534 (1490)
T ss_pred HHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhc
Confidence 9999999999999999998 6999999999999999999999965 3445677777888889999999
Q ss_pred CCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHH-HHHhhhCCCeEEEEcCCCCccccC
Q 001980 225 PNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE-ALDRLMVGRTTVVVAHRLSTIRNV 303 (987)
Q Consensus 225 ~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~vtH~~~~~~~~ 303 (987)
|.|++|.+|++|.+|||||||||+||||+|++|+++|||||||+||+++++.+++ ++.++.+++|+|+|||+++.+..|
T Consensus 535 ~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~a 614 (1490)
T TIGR01271 535 PEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKA 614 (1490)
T ss_pred cccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999987 567777799999999999999999
Q ss_pred CEEEEEeCCEEEEecChHHHHHhhhhHHHHHHHHHhhh----cc--------------c--c-----C-C------CCcc
Q 001980 304 DTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVR----NR--------------D--F-----A-N------PSTR 351 (987)
Q Consensus 304 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~----~~--------------~--~-----~-~------~~~~ 351 (987)
|+|++|++|++++.|+++++.+..+.|........... +. . . . . .+.+
T Consensus 615 d~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1490)
T TIGR01271 615 DKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPP 694 (1490)
T ss_pred CEEEEEECCEEEEEcCHHHHHhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999877666655542110000 00 0 0 0 0 0000
Q ss_pred cccccc----------------------------c-cccccccc--------------cccccccc---------ccc--
Q 001980 352 RSRSTR----------------------------L-SHSLSTKS--------------LSLRSGSL---------RNL-- 377 (987)
Q Consensus 352 ~~~~~~----------------------------~-~~~~~~~~--------------~~~~~~~~---------~~~-- 377 (987)
...... . ........ .+...... ...
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (1490)
T TIGR01271 695 EFAEKRKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQS 774 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccc
Confidence 000000 0 00000000 00000000 000
Q ss_pred -----cccccCC--------C--------Cc----ccc-----c-ccc-----------c------ccccCCCCCchHHH
Q 001980 378 -----SYSYSTG--------A--------DG----RIE-----M-VSN-----------A------ETDRKNPAPDGYFL 409 (987)
Q Consensus 378 -----~~~~~~~--------~--------~~----~~~-----~-~~~-----------~------~~~~~~~~~~~~~~ 409 (987)
....... . +. ... . ..+ . ..++++..+...|.
T Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~ 854 (1490)
T TIGR01271 775 VLQLMTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWN 854 (1490)
T ss_pred hhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHH
Confidence 0000000 0 00 000 0 000 0 00111223344555
Q ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h-hcC-cch-h---------hhhhHHH-HHHHHHH
Q 001980 410 RLLKLNAP--EWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVF--Y-YRN-PAS-M---------ERKTKEF-VFIYIGA 472 (987)
Q Consensus 410 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~-~~~-~---------~~~~~~~-~~~~~~~ 472 (987)
.|++|.+. .+..+++.+++.++..++.....+|+..|+... + ... ... . .....+| +.+|+++
T Consensus 855 vY~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1490)
T TIGR01271 855 TYLRYITTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGT 934 (1490)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHH
Confidence 55555432 222222223333333333444444444332100 0 000 000 0 0011223 4555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 001980 473 GLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTS 552 (987)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~ 552 (987)
++...++.+++.+++...+.+++.++|.+++++++++|++||++ ++.|+++|||++|++.+|..++..+..++..++.
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~ 1012 (1490)
T TIGR01271 935 ADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT--MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLI 1012 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65666777888889999999999999999999999999999986 7899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHH
Q 001980 553 LLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSL---KGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSL 629 (987)
Q Consensus 553 ~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~ 629 (987)
+++.++++++++|.+++ +++|++++++++..++. +...+......++..+++.|+++|+.|||+|++++++.++
T Consensus 1013 ~i~~l~~i~~~~p~l~l---~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~ 1089 (1490)
T TIGR01271 1013 VLGAIFVVSVLQPYIFI---AAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETL 1089 (1490)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHH
Confidence 99999888888886544 34444444333333333 3333444445678899999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 630 FCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEII 709 (987)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (987)
+.+..+...+..+.......|+.....++..+...+..+++ +....++.+.+..++.+......++..++..+.++.
T Consensus 1090 ~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~---~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le 1166 (1490)
T TIGR01271 1090 FHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIA---IGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVD 1166 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999877665554444333333332222221111111111 111223444555555555566677778888888999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCC----------------CCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCC
Q 001980 710 RGGESVGSVFSTLDRSTRIDPDDP----------------DAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAG 773 (987)
Q Consensus 710 ~~~~s~~ri~~~~~~~~~~~~~~~----------------~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~G 773 (987)
..+.+++|+.++++.+++.....+ ..++.||..|.|+|+||+|+|++. .++||+|+||+|+||
T Consensus 1167 ~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~G 1245 (1490)
T TIGR01271 1167 GLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGG 1245 (1490)
T ss_pred HHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCC
Confidence 999999999999976654321100 011235677999999999999753 457999999999999
Q ss_pred cEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHH
Q 001980 774 QSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEV 853 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei 853 (987)
||||||||||||||||+++|+|+++ ++|+|+|||+||++++++++|++|++|||||+||+||||+||++. .+++|+++
T Consensus 1246 ekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~-~~~tdeei 1323 (1490)
T TIGR01271 1246 QRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY-EQWSDEEI 1323 (1490)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcc-cCCCHHHH
Confidence 9999999999999999999999998 799999999999999999999999999999999999999999865 46899999
Q ss_pred HHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCC
Q 001980 854 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR 933 (987)
Q Consensus 854 ~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~ 933 (987)
|+||+.+++++++.++|+||||+|+|+|.+|||||||||||||||||+|+|||||||||+||.+||+.|++.|++.+++|
T Consensus 1324 ~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~ 1403 (1490)
T TIGR01271 1324 WKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNC 1403 (1490)
T ss_pred HHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhhh
Q 001980 934 TTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 934 TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q~ 984 (987)
|||+||||++++.+||||+||++|+|+|+|+|++|+++ +|.|++|++.+.
T Consensus 1404 TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1404 TVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAAD 1453 (1490)
T ss_pred EEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhC
Confidence 99999999999999999999999999999999999975 899999998764
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-110 Score=951.03 Aligned_cols=574 Identities=38% Similarity=0.610 Sum_probs=543.8
Q ss_pred hHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 406 GYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHY 485 (987)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (987)
..+++++.+.++.|+++..+.++.++........+.+.+.+++.++...+ ..........+..++.+.+.++.+++.+
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~--~~~~~~~~~~~l~~l~~~~a~~~~~r~~ 210 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDD--SADALKRACTILLGLFLIGALANAIRGG 210 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999888888899999999988776111 1233344566677777888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001980 486 FFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEW 565 (987)
Q Consensus 486 ~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (987)
++.+.+.+...++|.++|++++++.++|||. +..|++++|++.|+..+.+.++..+...+.+++..++++++|++.+|
T Consensus 211 ~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~--nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~ 288 (716)
T KOG0058|consen 211 LLQYAGERVVARLRTDLFRSLLRQDIAFFDE--NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSW 288 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence 9999999999999999999999999999996 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHH
Q 001980 566 RVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRS 645 (987)
Q Consensus 566 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (987)
.++++.++.+|++++...++.++.++.+++.+...+.......|.+.+++|||+|+.|+...++|.+.++...+...+..
T Consensus 289 ~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a 368 (716)
T KOG0058|consen 289 RLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEA 368 (716)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 001980 646 LTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRS 725 (987)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~ 725 (987)
...+++++...+..++....++|+|..++..|.++.|++..++++......++..+...+.++.++..+.+|+++++|++
T Consensus 369 ~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~ 448 (716)
T KOG0058|consen 369 VAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRK 448 (716)
T ss_pred HHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEE
Q 001980 726 TRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 805 (987)
Q Consensus 726 ~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~ 805 (987)
|..++. ....|. ..+|.|+|+||+|+||.+|+.+||||+||+|+|||+||+||||||||||++++|.|||+|++|+|+
T Consensus 449 P~i~~~-G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il 526 (716)
T KOG0058|consen 449 PRIPLT-GTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL 526 (716)
T ss_pred CCCCCC-Cccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 877654 222332 578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCC
Q 001980 806 IDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLS 885 (987)
Q Consensus 806 idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 885 (987)
+||+||++++.++||++||+|.|||+||+|||+|||.||.+.++||||.+|+++|++++||.++|+||||.|||+|..||
T Consensus 527 lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLS 606 (716)
T KOG0058|consen 527 LDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLS 606 (716)
T ss_pred ECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 001980 886 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSH 965 (987)
Q Consensus 886 gGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~ 965 (987)
|||||||||||||+|||+||||||||||||+++|..||++|.+..+++|||+|||||+||+.+|+|+|+++|+|+|.|+|
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h 686 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTH 686 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHHhhhc
Q 001980 966 SELVSRPDGAYSRLLQLQHH 985 (987)
Q Consensus 966 ~eLl~~~~g~f~~l~~~q~~ 985 (987)
+|||++++|.|++|+++|..
T Consensus 687 ~eLl~~~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 687 DELLSKPNGLYAKLVQRQLD 706 (716)
T ss_pred HHHhhCcccHHHHHHHHhcc
Confidence 99999988999999999854
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-97 Score=885.46 Aligned_cols=577 Identities=42% Similarity=0.678 Sum_probs=539.3
Q ss_pred chHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 001980 405 DGYFLRLLKLNA-PEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQ 483 (987)
Q Consensus 405 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (987)
..++..++++.. ..+..+.++.+++++.++..|++.++++.+.+.+..............+.+.|+.+++..++..+++
T Consensus 12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q 91 (1228)
T KOG0055|consen 12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQ 91 (1228)
T ss_pred ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666644 3567778899999999999999999999988877654422222355668888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 484 HYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIV 563 (987)
Q Consensus 484 ~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 563 (987)
..++.+.++|...++|++.+++++|++++|||.. ..|.+..|++.|++.+++.++..+..+++.+.++++++++.|+.
T Consensus 92 ~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~--~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~ 169 (1228)
T KOG0055|consen 92 VSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN--STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY 169 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc--cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999974 44999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHH
Q 001980 564 EWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLR 643 (987)
Q Consensus 564 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~ 643 (987)
.|+++++++++.|+++++.....+.+.+...+.+..+++..+...|++.+++||.+|+.|++..++|.+.++...+...+
T Consensus 170 ~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~ 249 (1228)
T KOG0055|consen 170 GWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIK 249 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001980 644 RSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLD 723 (987)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~ 723 (987)
...+.++..++..++.++.++..+|||..++..+..+.|.++.++..++.....+++.......+.++..++.++++.++
T Consensus 250 ~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~ 329 (1228)
T KOG0055|consen 250 KGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETID 329 (1228)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhc
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCce
Q 001980 724 RSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803 (987)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~ 803 (987)
..+..++...........+|+|+|+||+|+||.||+.++|+|+||+|++||.|||||+|||||||++++|.|||+|++|+
T Consensus 330 ~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~ 409 (1228)
T KOG0055|consen 330 RKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGE 409 (1228)
T ss_pred CCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCce
Confidence 88877665433334445789999999999999999989999999999999999999999999999999999999999999
Q ss_pred EEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCC
Q 001980 804 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ 883 (987)
Q Consensus 804 I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~ 883 (987)
|+|||.|+++++.++||++||+|.|||+||++||+|||.+|+|+++++++.+|+|.+++++||.++|+||||.|||+|..
T Consensus 410 V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~q 489 (1228)
T KOG0055|consen 410 VLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQ 489 (1228)
T ss_pred EEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEec
Q 001980 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQG 963 (987)
Q Consensus 884 LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~G 963 (987)
|||||||||||||||+|+|+|||||||||+||+++|+.||++|++..+|+|+|+|||||+||+++|+|+||++|+|||.|
T Consensus 490 LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G 569 (1228)
T KOG0055|consen 490 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQG 569 (1228)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHhhh
Q 001980 964 SHSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 964 t~~eLl~~~~g~f~~l~~~q~ 984 (987)
+|+||++++ |.|++|++.|.
T Consensus 570 ~h~ELi~~~-G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 570 THDELIALG-GIYSSLVRLQE 589 (1228)
T ss_pred CHHHHHhcc-chHHHHHHHHh
Confidence 999999985 99999999884
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-95 Score=860.77 Aligned_cols=568 Identities=31% Similarity=0.500 Sum_probs=519.6
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF 487 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (987)
+.+++....+.+..+.-.++.+++.+++..+.+++...+++.+..... ..........++.++++..++.+++.+++
T Consensus 142 ~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~---~~tL~vl~ig~~~~~l~~~~l~~lr~~~~ 218 (709)
T COG2274 142 LSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS---RSTLTVLAIGLLLAALFEALLRLLRTYLI 218 (709)
T ss_pred hHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666666666666677777777777777776654322 12223344555666777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001980 488 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV 567 (987)
Q Consensus 488 ~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 567 (987)
...+.+....+-.++|+|+++.|++||.+ ++.|++++|+ +|.+.|++++...+...+..++.+++.++++++++|.+
T Consensus 219 ~~~~~rld~~l~~~~~~hll~Lpl~~f~~--r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L 295 (709)
T COG2274 219 AHLGKRLDLELSGRFFRHLLRLPLSYFEK--RSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKL 295 (709)
T ss_pred HHHHHHHhHHHHHHHHHHHHcCcHHHccC--CChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999974 7999999998 58999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001980 568 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 647 (987)
Q Consensus 568 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (987)
+++.++.+|++++..++..+++++..++.....+...+.+.|++.|++|||+.+.|.++..+|++.+.++.+..++....
T Consensus 296 ~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~ 375 (709)
T COG2274 296 TLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKL 375 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001980 648 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTR 727 (987)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~ 727 (987)
..+...+..++..+..++++|+|+.+|..|.+|+|.++++.+....+..|+..+...+.++.+...+.+|+.++++.++|
T Consensus 376 ~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E 455 (709)
T COG2274 376 ALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPE 455 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC
Q 001980 728 IDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 807 (987)
Q Consensus 728 ~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~id 807 (987)
.+.+.. ....++..|+|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+|+|.|+|+|++|+|++|
T Consensus 456 ~~~~~~-~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~d 533 (709)
T COG2274 456 QEGDKT-LIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLD 533 (709)
T ss_pred cccccc-cccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 543321 22345678999999999999765 3479999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 001980 808 GKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 887 (987)
Q Consensus 808 G~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 887 (987)
|+|+++++++.||++|+|||||++||+|||||||+++.|++++||+++||+.+++++||.++|.||||+|||+|.+||||
T Consensus 534 g~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGG 613 (709)
T COG2274 534 GVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGG 613 (709)
T ss_pred CEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhH
Q 001980 888 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 888 QrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~e 967 (987)
|||||+|||||++||+||||||||||||++||+.|.+.|.+..++||+|+||||++++++||||+|||+|+|+|+|+|+|
T Consensus 614 QrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~e 693 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEE 693 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHHHhhh
Q 001980 968 LVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 968 Ll~~~~g~f~~l~~~q~ 984 (987)
|++. +|.|+++|+.|.
T Consensus 694 ll~~-~g~y~~l~~~q~ 709 (709)
T COG2274 694 LLAQ-GGLYARLYQQQE 709 (709)
T ss_pred HHHh-cChHHHHHhccC
Confidence 9998 999999998873
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-89 Score=818.92 Aligned_cols=554 Identities=34% Similarity=0.559 Sum_probs=492.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 418 EWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTR 497 (987)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (987)
.+ .+.++.++.++...+....++++...++... ........+...++++.++..++.++..++..+.+.+...+
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 86 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-----ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVAD 86 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 5566666666666666666777776666554 11122233444555555567777778888888888999999
Q ss_pred HHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001980 498 VRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPL 577 (987)
Q Consensus 498 l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl 577 (987)
+|.++++++++.|++||+. ++.|.+++|+++|++.++..+......+...++.+++.+++++..+|.+++++++.+|+
T Consensus 87 lr~~~~~~l~~~~~~~~~~--~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 164 (567)
T COG1132 87 LRRDLFEKLLRLPLSFFDK--AKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPL 164 (567)
T ss_pred HHHHHHHHHHhCCHHHhCc--CCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999986 67999999999999999999999966666678888899999999999999999999898
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001980 578 LVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQF 657 (987)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (987)
+.+......++.++..+..+...++....+.|+++|+++||+|+.++...+++.+..+...+...+..........+...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (567)
T COG1132 165 LALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLL 244 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877776666677788888888999999999999999999999999999999999888888887878888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCC
Q 001980 658 ALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEP 737 (987)
Q Consensus 658 ~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~ 737 (987)
+.....++.+++|..++..+.+++|.+..++.+......++..+......+.....+.+|++++++.+++....+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--- 321 (567)
T COG1132 245 LSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--- 321 (567)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999976543221111
Q ss_pred CCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH
Q 001980 738 VETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK 817 (987)
Q Consensus 738 ~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~ 817 (987)
.....|+|+|+||+|+|++ +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+|||+||++++++
T Consensus 322 ~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~ 399 (567)
T COG1132 322 LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLD 399 (567)
T ss_pred CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHH
Confidence 2344578999999999974 34699999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 818 SLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 818 ~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
+||++|++|||||+||+|||+|||++|+++++|||+++|++.++++|||.++|+||||+|||+|.+||||||||||||||
T Consensus 400 ~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARa 479 (567)
T COG1132 400 SLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARA 479 (567)
T ss_pred HHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYS 977 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~ 977 (987)
++++|+|||||||||+||++||+.|++++++..+++|+|+||||++|+++||+|+|||+|+|+|+|+|+||+++ +|.|+
T Consensus 480 ll~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~ 558 (567)
T COG1132 480 LLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYA 558 (567)
T ss_pred HhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHH
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999998 99999
Q ss_pred HHHHhhhc
Q 001980 978 RLLQLQHH 985 (987)
Q Consensus 978 ~l~~~q~~ 985 (987)
+||+.|..
T Consensus 559 ~l~~~~~~ 566 (567)
T COG1132 559 RLYQAQGG 566 (567)
T ss_pred HHHHHhhc
Confidence 99998854
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-87 Score=813.67 Aligned_cols=570 Identities=24% Similarity=0.302 Sum_probs=482.8
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF 487 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (987)
+++++++.++.++.++++++++++..++....++++..+++.....+.. ......+..+++++.++..++.+++.++.
T Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (588)
T PRK11174 10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP--REALLPPFILLILLFVLRALLAWLRERVG 87 (588)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888888888888888888888888765422111 11122234445555666777888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001980 488 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV 567 (987)
Q Consensus 488 ~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 567 (987)
...+.+...++|.++|+++++.|..||+. +++|++++|+++|++.++..+...+..++..++.++++++++++++|.+
T Consensus 88 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 165 (588)
T PRK11174 88 FKAGQHIRQQIRQQVLDKLQQLGPAWIQG--KPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAA 165 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhcc--CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999984 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001980 568 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 647 (987)
Q Consensus 568 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (987)
++++++.+|+.+++.....+..++..++.++..+.....+.|.++|+++||+|++|+.+.++|.+..+...+...+..+.
T Consensus 166 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 245 (588)
T PRK11174 166 GLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRM 245 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887777777777777777788888999999999999999999999999999999998888877776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 648 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKV---------IKVFVVLVVTANSVAETVSLAPEIIRGGESVGSV 718 (987)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri 718 (987)
......+...+..+..+++.+++...+ .|.+++|.+ +..+.+......|+..+......+.++..+.+|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri 324 (588)
T PRK11174 246 AFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESL 324 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555555555544444444444333 377776653 1111233345678888888888999999999999
Q ss_pred HHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 719 FSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
.++++.+++.++.. ....+.+..+.|+|+||+|.|++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|
T Consensus 325 ~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~- 400 (588)
T PRK11174 325 VTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL- 400 (588)
T ss_pred HHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-
Confidence 99998654321111 10111123457999999988854 346999999999999999999999999999999999999
Q ss_pred CCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccC
Q 001980 799 PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVG 878 (987)
Q Consensus 799 p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vg 878 (987)
|++|+|++||+|+++++.+++|++|+||||||+||+|||||||.+++|+++|+|+++|++.+++++++.++|+||||.||
T Consensus 401 p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vg 480 (588)
T PRK11174 401 PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIG 480 (588)
T ss_pred CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCE
Q 001980 879 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGR 958 (987)
Q Consensus 879 e~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ 958 (987)
|+|.+|||||||||||||||+++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++.+||+|+||++|+
T Consensus 481 e~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~ 560 (588)
T PRK11174 481 DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQ 560 (588)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCe
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred EEEecChhHHhcCCCchHHHHHHhhhccC
Q 001980 959 IVEQGSHSELVSRPDGAYSRLLQLQHHHI 987 (987)
Q Consensus 959 ive~Gt~~eLl~~~~g~f~~l~~~q~~~~ 987 (987)
|+|.|+|+||+++ +|.|+++++.|.+++
T Consensus 561 i~e~G~~~eL~~~-~~~y~~l~~~q~~~~ 588 (588)
T PRK11174 561 IVQQGDYAELSQA-GGLFATLLAHRQEEI 588 (588)
T ss_pred EeecCCHHHHHhc-chHHHHHHHHhhcCC
Confidence 9999999999987 789999999998765
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-87 Score=817.55 Aligned_cols=564 Identities=32% Similarity=0.503 Sum_probs=499.7
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 407 YFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYF 486 (987)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (987)
.+++++++.++.++.+...+++.++.++.....+++...+++....... .......+.+++++.++..++.+++.++
T Consensus 148 ~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 224 (711)
T TIGR00958 148 LLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG---PPALASAIFFMCLLSIASSVSAGLRGGS 224 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777778777777777788888888888888888876543221 1111223344445556677778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001980 487 FSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWR 566 (987)
Q Consensus 487 ~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (987)
+.+.+.+...++|.++|++++++|+.||+. ++.|++++|+++|++.+++.+...+..++..++.+++++++++.++|.
T Consensus 225 ~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~--~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~ 302 (711)
T TIGR00958 225 FNYTMARINLRIREDLFRSLLRQDLGFFDE--NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPR 302 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999985 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHH
Q 001980 567 VSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL 646 (987)
Q Consensus 567 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (987)
+++++++.+|+.+++.....++.++..++.++..++....+.|+++|+++||+|+.|+++.++|.+..++..+...+...
T Consensus 303 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 382 (711)
T TIGR00958 303 LTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKAL 382 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888887777777887888888888899999999999999999999999999999999988888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 001980 647 TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRST 726 (987)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 726 (987)
...........+..+..++++++|.+++..|.++.|.++++..+......++..+.....++.+...+.+|+.++++.++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 462 (711)
T TIGR00958 383 AYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKP 462 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 76666666667777777888899999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEE
Q 001980 727 RIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 806 (987)
Q Consensus 727 ~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~i 806 (987)
+.++.. ...+.+..|.|+|+||+|+||++++.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 463 ~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 540 (711)
T TIGR00958 463 NIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540 (711)
T ss_pred CCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 432211 111223467899999999998766668999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 001980 807 DGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 886 (987)
Q Consensus 807 dG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 886 (987)
||+|+++++.+++|++|+||||||++|+|||||||.++.++++|+++++|++.++++++++++|+|+||.+||+|.+|||
T Consensus 541 dg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 620 (711)
T TIGR00958 541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG 620 (711)
T ss_pred CCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChh
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHS 966 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~ 966 (987)
|||||||||||++++|+|||||||||+||+++|+.|++ ....+++|+|+||||++++..||+|+||++|+|+|+|+|+
T Consensus 621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~ 698 (711)
T TIGR00958 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHK 698 (711)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHH
Confidence 99999999999999999999999999999999999999 3345789999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHH
Q 001980 967 ELVSRPDGAYSRLL 980 (987)
Q Consensus 967 eLl~~~~g~f~~l~ 980 (987)
||+++ +|.|++|+
T Consensus 699 eL~~~-~~~y~~lv 711 (711)
T TIGR00958 699 QLMED-QGCYKHLV 711 (711)
T ss_pred HHHhC-CCchHhcC
Confidence 99987 78999874
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-85 Score=808.28 Aligned_cols=562 Identities=25% Similarity=0.350 Sum_probs=495.7
Q ss_pred HHHHHHH-hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKL-NAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYF 486 (987)
Q Consensus 408 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (987)
+++++++ .++.++.++..++++++..++....+++...+++....... ......+...++++.++..++.+++.++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 199 (686)
T TIGR03797 123 LRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD---RSLLVQIALALLAAAVGAAAFQLAQSLA 199 (686)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 34556666666667777777777777777777766542211 1112234445555666677888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001980 487 FSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWR 566 (987)
Q Consensus 487 ~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (987)
....+.+...++|.++|+++++.|+.||+. .+.|++++|++ |++.+++.+...+...+..++.+++++++++.++|.
T Consensus 200 ~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~--~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (686)
T TIGR03797 200 VLRLETRMDASLQAAVWDRLLRLPVSFFRQ--YSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWK 276 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHCC--CChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999974 79999999997 899999999988888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHH
Q 001980 567 VSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL 646 (987)
Q Consensus 567 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (987)
+++++++++|+.+++.++..+..++..++..+..++..+.+.|+++|+++||+|+.++++.++|.+..+...+...+...
T Consensus 277 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 356 (686)
T TIGR03797 277 LALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQR 356 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888877777777777888888888999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 001980 647 TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRST 726 (987)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 726 (987)
...+...+...+..+..++++|+|.+++..|.++.|.++++..+......++..+......+.....+.+|+.++++.++
T Consensus 357 ~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 436 (686)
T TIGR03797 357 IENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALP 436 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999988654
Q ss_pred CCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEE
Q 001980 727 RIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 806 (987)
Q Consensus 727 ~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~i 806 (987)
+.+... ..+.+..|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 437 e~~~~~---~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 512 (686)
T TIGR03797 437 EVDEAK---TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFY 512 (686)
T ss_pred ccccCc---CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 432111 1122345789999999999743 357999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 001980 807 DGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 886 (987)
Q Consensus 807 dG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 886 (987)
||+|+++++.+++|++|+||||||++|+|||||||.++.+ ++|+++++|++.+++++++.++|+|+||++||+|.+|||
T Consensus 513 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSG 591 (686)
T TIGR03797 513 DGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSG 591 (686)
T ss_pred CCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 9999999999999999999999999999999999999988 999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChh
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHS 966 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~ 966 (987)
||||||+|||||+++|+|||||||||+||++||+.|++.|++. ++|+|+||||++++..||+|+||++|+|+|.|+|+
T Consensus 592 GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~ 669 (686)
T TIGR03797 592 GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYD 669 (686)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999999986 68999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHhh
Q 001980 967 ELVSRPDGAYSRLLQLQ 983 (987)
Q Consensus 967 eLl~~~~g~f~~l~~~q 983 (987)
||+++ +|.|++|++.|
T Consensus 670 ~Ll~~-~~~y~~l~~~q 685 (686)
T TIGR03797 670 ELMAR-EGLFAQLARRQ 685 (686)
T ss_pred HHHhC-CcHHHHHHHhc
Confidence 99987 89999999876
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-85 Score=728.66 Aligned_cols=552 Identities=27% Similarity=0.377 Sum_probs=485.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 425 GAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLA 504 (987)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 504 (987)
..++.++.+++...+.++++..+...+.... ......+...++++.++..++.+.+.....+.+.++...+|+++++
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~ 81 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL---FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLD 81 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666777777778877777664432 1223345666667777888888999999999999999999999999
Q ss_pred HHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001980 505 AILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFA 584 (987)
Q Consensus 505 ~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~ 584 (987)
++.+.+..|-.. .++|++...++..++.++.++...++.++.+.+..+..++.+++++|..+++++++.|++.+++++
T Consensus 82 ~l~~~gp~~~~~--~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil 159 (559)
T COG4988 82 KLAKLGPAFIAQ--KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL 159 (559)
T ss_pred HHHhCChhhhcC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999998875 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 585 QQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEA 664 (987)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (987)
.....+..+++.......+..++.+.++|+.|+|+||..+...++..+..++..+..++.-+..-....+..++.++..+
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiA 239 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIA 239 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888888888899999999999999999999999999999999999988888887666666666666777777766
Q ss_pred HHHHHH-HHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccc
Q 001980 665 LILWYG-VHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRG 743 (987)
Q Consensus 665 ~~~~~g-~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g 743 (987)
++..+. ..++..|.++....+.++...-=++.|+-.+.+.+.....+..+.+.++.+.+.+.+..+........+..+.
T Consensus 240 lvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (559)
T COG4988 240 LVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPI 319 (559)
T ss_pred HHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCc
Confidence 665444 4444437888877777766666678899999999999999988999999998876554332221111122234
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
+|+++|++|+|++++ ++++|+||+++||+++||||+||||||||+++|+|+++|++|+|.+||+|+++++.++||+++
T Consensus 320 ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i 397 (559)
T COG4988 320 EISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI 397 (559)
T ss_pred eeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHe
Confidence 567779999998653 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCC
Q 001980 824 GLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA 903 (987)
Q Consensus 824 ~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ 903 (987)
++|||+|++|+|||||||.+++++.+|++++++++.+++.+|+.. |+|+||++||+|.+|||||+||++|||||+++++
T Consensus 398 ~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 398 SWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred eeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhh
Q 001980 904 ILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983 (987)
Q Consensus 904 ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q 983 (987)
++|||||||+||.+||+.|++.|.+.++++|||+||||+..+.++|+|+|||+||++|.|+|++|.++ +|.|++|+++|
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q 555 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQ 555 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 89999999988
Q ss_pred hc
Q 001980 984 HH 985 (987)
Q Consensus 984 ~~ 985 (987)
.+
T Consensus 556 ~~ 557 (559)
T COG4988 556 EG 557 (559)
T ss_pred hc
Confidence 53
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-85 Score=804.78 Aligned_cols=564 Identities=23% Similarity=0.377 Sum_probs=496.1
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 407 YFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYF 486 (987)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (987)
.+++++.+.++.++.++..++++++..++....++++..+++.+..... ......+...++++.++..++.+++.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 219 (708)
T TIGR01193 143 SLLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM---MGTLGIISIGLIIAYIIQQILSYIQIFL 219 (708)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666777777777777888887776543221 1112223334444555667788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001980 487 FSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWR 566 (987)
Q Consensus 487 ~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (987)
..+.+.+...++|.++|+++++.|+.||+. .+.|++++|++ |.+.+.+.+...+...+..++.+++.++++++++|+
T Consensus 220 ~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~--~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (708)
T TIGR01193 220 LNVLGQRLSIDIILSYIKHLFELPMSFFST--RRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNML 296 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999985 79999999998 999999999888888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHH
Q 001980 567 VSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL 646 (987)
Q Consensus 567 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (987)
+++++++++|+++++.++..++.++..++.....+...+.+.|+++|+++||+||.++++.++|.+..+...+...+...
T Consensus 297 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 376 (708)
T TIGR01193 297 LFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQK 376 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888889999999999999999999999999999999999888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 001980 647 TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRST 726 (987)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 726 (987)
.......+..++..+..++++|+|.+++..|.+++|.++++..+......|+..+......+.....+.+|+.++++.++
T Consensus 377 ~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 456 (708)
T TIGR01193 377 ADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDS 456 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77777777777777888889999999999999999999999999999999999999999999999999999999988665
Q ss_pred CCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEE
Q 001980 727 RIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 806 (987)
Q Consensus 727 ~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~i 806 (987)
+.+... ...+.++..|.|+|+||+|+|++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 457 e~~~~~-~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~i 533 (708)
T TIGR01193 457 EFINKK-KRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533 (708)
T ss_pred cccccc-cccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEE
Confidence 432211 11112344678999999999963 346999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHHhcccEEEccccccccccHHHHhccC-CCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCC
Q 001980 807 DGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-KEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLS 885 (987)
Q Consensus 807 dG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~-~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 885 (987)
||+|+++++.+++|++|+||||||+||+|||||||.++ .++++|+++++|++.+++++++.++|+||||++||+|.+||
T Consensus 534 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LS 613 (708)
T TIGR01193 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSIS 613 (708)
T ss_pred CCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCC
Confidence 99999999999999999999999999999999999998 57899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 001980 886 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSH 965 (987)
Q Consensus 886 gGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~ 965 (987)
|||||||+||||++++|+|||||||||+||++||+.|++.|++. +++|+|+||||++++..||+|+||++|+++|.|+|
T Consensus 614 gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~ 692 (708)
T TIGR01193 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSH 692 (708)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999985 78999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHH
Q 001980 966 SELVSRPDGAYSRLLQ 981 (987)
Q Consensus 966 ~eLl~~~~g~f~~l~~ 981 (987)
++|+++ +|.|++||+
T Consensus 693 ~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 693 DELLDR-NGFYASLIH 707 (708)
T ss_pred HHHHhc-CCcHHHHhh
Confidence 999987 799999985
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-85 Score=804.22 Aligned_cols=564 Identities=24% Similarity=0.353 Sum_probs=494.8
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 407 YFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYF 486 (987)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (987)
.+++++.+.++.++.+...++++++..++....+++...+++........ .....+...++++.++..++.+++.++
T Consensus 141 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (710)
T TIGR03796 141 LLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQ---DWLRPLLLGMGLTALLQGVLTWLQLYY 217 (710)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666666666666777777777655432211 111223444455556677888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001980 487 FSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWR 566 (987)
Q Consensus 487 ~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (987)
....+.+...+++.++|+++++.|++||+. .+.|++++|++.| +.+.+.+...+...+..++.+++.+++++.++|.
T Consensus 218 ~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~--~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 294 (710)
T TIGR03796 218 LRRLQIKLAVGMSARFLWHILRLPVRFFAQ--RHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPV 294 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHcC--CcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999975 7999999999988 6899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHH
Q 001980 567 VSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL 646 (987)
Q Consensus 567 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (987)
+++++++.+|+.+++.++..+..++..++..+..++..+.+.|+++|+++||++++++.+.++|.+...+..+...+...
T Consensus 295 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 374 (710)
T TIGR03796 295 LTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGV 374 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888777777777777888888899999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 001980 647 TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRST 726 (987)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 726 (987)
...+...+..++..+..++++|+|.+++..|.+++|.++++..+......++..+.....++.....+++|+.++++.++
T Consensus 375 ~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~ 454 (710)
T TIGR03796 375 LTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPV 454 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCCCC---C-CCCC-CCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC
Q 001980 727 RIDPDDP---D-AEPV-ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 801 (987)
Q Consensus 727 ~~~~~~~---~-~~~~-~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~ 801 (987)
+.+...+ . .... ++..|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++
T Consensus 455 e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~ 533 (710)
T TIGR03796 455 DPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533 (710)
T ss_pred ccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 4322110 0 0111 2346789999999999753 3579999999999999999999999999999999999999999
Q ss_pred ceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCC
Q 001980 802 GKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERG 881 (987)
Q Consensus 802 G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G 881 (987)
|+|++||+|+++++.+++|++|+||||||++|+|||||||.++.++++|+++++|++.+++++++.++|+||||++||+|
T Consensus 534 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 534 GEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred cEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEE
Q 001980 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVE 961 (987)
Q Consensus 882 ~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive 961 (987)
.+|||||||||||||||+++|+|||||||||+||++||+.|.+.|++ .++|+|+||||++++..||+|+||++|+|+|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~ 691 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQ 691 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999987 5899999999999999999999999999999
Q ss_pred ecChhHHhcCCCchHHHHH
Q 001980 962 QGSHSELVSRPDGAYSRLL 980 (987)
Q Consensus 962 ~Gt~~eLl~~~~g~f~~l~ 980 (987)
.|+|+||+++ +|.|++|+
T Consensus 692 ~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 692 RGTHEELWAV-GGAYARLI 709 (710)
T ss_pred ecCHHHHHHc-CCcHHHHh
Confidence 9999999987 89999987
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-84 Score=777.86 Aligned_cols=567 Identities=22% Similarity=0.310 Sum_probs=484.0
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPA-SMERKTKEFVFIYIGAGLYAVVAYLIQHYF 486 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (987)
+++++++.++.++.+++++++.++..++....++++..+++........ ............+++++++..++.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (574)
T PRK11160 4 LLPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLV 83 (574)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566667777777777777777777766777777766654321110 000001112233444556677788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001980 487 FSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWR 566 (987)
Q Consensus 487 ~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (987)
....+.+...++|.++|++++++|+.||+. .++|++++|+++|++.++..+...+..++..++.++++++++++++|.
T Consensus 84 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (574)
T PRK11160 84 SHDATFRVLTHLRVFTFSKLLPLSPAGLAR--YRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLT 161 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHhhcc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999985 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHH
Q 001980 567 VSLLILGTYPLLVLA-NFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRS 645 (987)
Q Consensus 567 l~l~~l~~~pl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (987)
+++++++++|+++++ .++..+..+...++.++..+.....+.|.++|+++||+|+.++++.++|.+..++..+...+..
T Consensus 162 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 241 (574)
T PRK11160 162 LALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQA 241 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888876543 3555566666677777788889999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001980 646 LTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVV-TANSVAETVSLAPEIIRGGESVGSVFSTLDR 724 (987)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~ 724 (987)
+...+...+..++..+..++++++|.+++ .|.++.|.+++++.+... ...++..+......+.+...+.+|+.++++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~ 320 (574)
T PRK11160 242 NLTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQ 320 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88888888888888888888889999884 788999988876665433 3456666677778888899999999999987
Q ss_pred cCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceE
Q 001980 725 STRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804 (987)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I 804 (987)
+++.+... .....+..+.|+|+||+|+|+++ +.++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|
T Consensus 321 ~~~~~~~~--~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I 397 (574)
T PRK11160 321 KPEVTFPT--TSTAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI 397 (574)
T ss_pred CCCCCCCc--ccCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 65422111 11112345789999999999753 2469999999999999999999999999999999999999999999
Q ss_pred EECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCC
Q 001980 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQL 884 (987)
Q Consensus 805 ~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 884 (987)
++||+|+++++.+++|++|+||||||++|+|||+|||.++.++++|++++++++.+++++++.+ |+||||++||+|.+|
T Consensus 398 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~L 476 (574)
T PRK11160 398 LLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQL 476 (574)
T ss_pred EECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCC
Confidence 9999999999999999999999999999999999999999989999999999999999999999 999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecC
Q 001980 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGS 964 (987)
Q Consensus 885 SgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt 964 (987)
|||||||||||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+
T Consensus 477 SgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~ 556 (574)
T PRK11160 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGT 556 (574)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCchHHHHHHh
Q 001980 965 HSELVSRPDGAYSRLLQL 982 (987)
Q Consensus 965 ~~eLl~~~~g~f~~l~~~ 982 (987)
|+||+++ +|.|++||+.
T Consensus 557 ~~~l~~~-~g~y~~l~~~ 573 (574)
T PRK11160 557 HQELLAQ-QGRYYQLKQR 573 (574)
T ss_pred HHHHHhc-CcHHHHHHhh
Confidence 9999987 8999999863
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-87 Score=713.65 Aligned_cols=503 Identities=29% Similarity=0.421 Sum_probs=437.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 476 AVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLT 555 (987)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~ 555 (987)
+.++.-++.+++..+.+-....+-.++|+|+..+++.|+-. ...|+++.-+.+....+. ++...+.++.-.+..+.+
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~--rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~v 348 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLN--RRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGV 348 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeec--ccccceeehhccCcchhh-HHHHHHhhcccHHHHhhh
Confidence 35666678888888888999999999999999999999965 678888888888877776 555555555555555555
Q ss_pred HHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHH
Q 001980 556 SFIVA-FIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHEL 634 (987)
Q Consensus 556 ~~~~~-~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~ 634 (987)
+++.. ..++|+.+++++.+..++........-...++.|++.....+....-.+++-+.+|+|.||++++..++|.+..
T Consensus 349 a~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAi 428 (790)
T KOG0056|consen 349 AMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAI 428 (790)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHH
Confidence 55543 34688888887776666554443333333344555555566667777899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 635 RVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGES 714 (987)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 714 (987)
.++++...+....-.++......+..+...+...+..++|..+..++|+++.+..+++....|+.....+...+++....
T Consensus 429 l~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiD 508 (790)
T KOG0056|consen 429 LKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFID 508 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhh
Confidence 99999887766666666666666666666666666667777888999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHh
Q 001980 715 VGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIE 794 (987)
Q Consensus 715 ~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~ 794 (987)
+|+++++++++++.. +.|...|....+|.|+|+||+|.|. |++|||+||||+++||+.+|+|||||+||||++++|+
T Consensus 509 mEnmfdllkee~eVv-d~P~a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLf 585 (790)
T KOG0056|consen 509 MENMFDLLKEEPEVV-DLPGAPPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLF 585 (790)
T ss_pred HHHHHHHhhcCchhh-cCCCCCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHH
Confidence 999999998776643 2333334445689999999999995 5678999999999999999999999999999999999
Q ss_pred ccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCC
Q 001980 795 RFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYK 874 (987)
Q Consensus 795 rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gld 874 (987)
||||.++|.|.|||+||+.+..++||++||+||||.+||+.||.+||.|++|.+++||+++|++.|++||-|.++|+||+
T Consensus 586 Rffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~ 665 (790)
T KOG0056|consen 586 RFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYN 665 (790)
T ss_pred HHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEE
Q 001980 875 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVV 954 (987)
Q Consensus 875 t~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl 954 (987)
|.|||+|-.||||||||+||||++|++|.|++||||||+||..||+.||.++.+...++|.|+|||||+|+.++|.|+|+
T Consensus 666 t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi 745 (790)
T KOG0056|consen 666 TRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVI 745 (790)
T ss_pred hhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCEEEEecChhHHhcCCCchHHHHHHhhh
Q 001980 955 QDGRIVEQGSHSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 955 ~~G~ive~Gt~~eLl~~~~g~f~~l~~~q~ 984 (987)
++|+|+|.|+|+||+.+++|.|++||+.|+
T Consensus 746 ~~G~IvErG~HeeLl~rdgG~Ya~MWq~qq 775 (790)
T KOG0056|consen 746 SNGRIVERGRHEELLKRDGGAYADMWQAQQ 775 (790)
T ss_pred eCCeEeecCcHHHHHhccCCcHHHHHHHHH
Confidence 999999999999999999999999997764
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-83 Score=775.31 Aligned_cols=567 Identities=30% Similarity=0.474 Sum_probs=489.7
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 409 LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFS 488 (987)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (987)
++++.+.++.++.++..+++.++..+.....++++..+++....... ......+...++++.++..++.+++.++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 90 (582)
T PRK11176 14 RRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD---RSVLKWMPLVVIGLMILRGITSFISSYCIS 90 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555544455444445555556655554432111 111112233344456667777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001980 489 IMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVS 568 (987)
Q Consensus 489 ~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 568 (987)
+.+.+....+|.++++++++.|..+|+. .+.|++++|+++|++.+...+...+..++..++.++++++++++++|.++
T Consensus 91 ~~~~~~~~~lr~~~~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 168 (582)
T PRK11176 91 WVSGKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLS 168 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999975 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001980 569 LLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTA 648 (987)
Q Consensus 569 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (987)
+++++++|+.+++.+...+..++..++.++........+.|.++|+++||+|+.++.+.++|.+..+...+...+.....
T Consensus 169 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (582)
T PRK11176 169 LILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSAS 248 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888877777777777778888888889999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 001980 649 GILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRI 728 (987)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~ 728 (987)
.+...+...+..+..++++++|..++..|.+++|.++.++.+......++..+......+.....+.+|+.++++.+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 328 (582)
T PRK11176 249 SISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEK 328 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 88788888888888888899999999999999999998888888888999999999999999999999999988765432
Q ss_pred CCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 001980 729 DPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808 (987)
Q Consensus 729 ~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG 808 (987)
+.. ....++..+.|+|+||+|+|+++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 329 ~~~---~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g 404 (582)
T PRK11176 329 DEG---KRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG 404 (582)
T ss_pred CCC---CcCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECC
Confidence 211 11122334679999999999754 35799999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCC-CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 001980 809 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEG-ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 887 (987)
Q Consensus 809 ~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~-~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 887 (987)
+|+++++.+++|++|+||||||++|+|||||||.++.++ ++|++++++++.++++++++++|+|+||++||+|.+||||
T Consensus 405 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 405 HDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred EEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 999999999999999999999999999999999998654 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhH
Q 001980 888 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 888 QrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~e 967 (987)
|||||+|||||+++|+|||||||||+||++||+.+.+.|.+..+++|+|+||||++++..||+|++|++|+|+|.|+|++
T Consensus 485 qrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~ 564 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAE 564 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHHHhhhc
Q 001980 968 LVSRPDGAYSRLLQLQHH 985 (987)
Q Consensus 968 Ll~~~~g~f~~l~~~q~~ 985 (987)
|+++ ++.|++|++.|.+
T Consensus 565 l~~~-~~~y~~l~~~~~~ 581 (582)
T PRK11176 565 LLAQ-NGVYAQLHKMQFG 581 (582)
T ss_pred HHhC-CChHHHHHHHHhc
Confidence 9987 7899999987754
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-83 Score=789.50 Aligned_cols=554 Identities=26% Similarity=0.402 Sum_probs=487.0
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 409 LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFS 488 (987)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (987)
.+++.+.++.++.+...++++++..++....++++..+++........ .....+...++++.++..++.+++.++..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (694)
T TIGR03375 136 HWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAF---ETLWVLAIGVALAIVFDFVLKTLRSYFLD 212 (694)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445566666666666666666777777777777665422111 11122333344445566778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001980 489 IMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVS 568 (987)
Q Consensus 489 ~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 568 (987)
+.+.+...++|.++|+|+++.|+.| + ..+.|++++|+ +|++.+++.+...+...+..++.+++.++++++++|.++
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 288 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLV 288 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999998 4 36899999999 799999999999888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001980 569 LLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTA 648 (987)
Q Consensus 569 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (987)
+++++.+|+++++.++..++.++..++.....++..+.+.|+++|+++||+|+.++.+.++|.+..+...+...+.....
T Consensus 289 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (694)
T TIGR03375 289 WVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLS 368 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888788888888999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 001980 649 GILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRI 728 (987)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~ 728 (987)
.+...+...+..+..++++|+|.+++..|.+++|.++++..+......++..+.....++.....+.+|+.++++.+++.
T Consensus 369 ~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~ 448 (694)
T TIGR03375 369 NLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVER 448 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 001980 729 DPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808 (987)
Q Consensus 729 ~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG 808 (987)
++.. .....++..|.|+|+||+|+|++. +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 449 ~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg 526 (694)
T TIGR03375 449 PEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDG 526 (694)
T ss_pred CCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 2211 111122345789999999999753 34699999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 809 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 809 ~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
+|+++++++++|++|+||||||++|+|||||||.++.++++++++++|++.+++++++.++|+||||.+||+|.+|||||
T Consensus 527 ~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQ 606 (694)
T TIGR03375 527 VDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQ 606 (694)
T ss_pred EEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHH
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eL 968 (987)
||||+||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|+||
T Consensus 607 rQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eL 686 (694)
T TIGR03375 607 RQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQV 686 (694)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred hcC
Q 001980 969 VSR 971 (987)
Q Consensus 969 l~~ 971 (987)
+++
T Consensus 687 l~~ 689 (694)
T TIGR03375 687 LEA 689 (694)
T ss_pred HHH
Confidence 875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-83 Score=772.79 Aligned_cols=565 Identities=23% Similarity=0.346 Sum_probs=475.9
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF 487 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (987)
+++++.+.++.++.++..+++.++.+++....++++..+++......+... .....+.++++++.++..++.+++.++.
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (592)
T PRK10790 11 LKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL-GLVAGLAAAYVGLQLLAAGLHYAQSLLF 89 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666777777777777777777777776543211110 1111122334444556667778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001980 488 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV 567 (987)
Q Consensus 488 ~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 567 (987)
...+.+...++|.++|+++++.|.+||+. .+.|++++|+++|++.++..+...+..++..++.+++.++++++++|.+
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 167 (592)
T PRK10790 90 NRAAVGVVQQLRTDVMDAALRQPLSAFDT--QPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRM 167 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999985 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001980 568 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 647 (987)
Q Consensus 568 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (987)
++++++++|+.++.........+...++..+...+...++.|.++|+++||+|+.++.+.+++.+..+...+...+....
T Consensus 168 ~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (592)
T PRK10790 168 ALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRL 247 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888777766666667667777777788889999999999999999999999999999888777766665554
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 001980 648 AGIL-FGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRST 726 (987)
Q Consensus 648 ~~~~-~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 726 (987)
..+. ..+..+...+...+..+++.. +..|.+++|.++++..+......++..+......+.+...+.+|+.++++.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 326 (592)
T PRK10790 248 DGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPR 326 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4432 222333332222222222233 57899999999999888888999999999999999999999999999987653
Q ss_pred CCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEE
Q 001980 727 RIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 806 (987)
Q Consensus 727 ~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~i 806 (987)
+... . ...+...++|+|+||+|+|+++ .++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus 327 ~~~~-~---~~~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 400 (592)
T PRK10790 327 QQYG-N---DDRPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400 (592)
T ss_pred ccCC-C---CccCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEE
Confidence 3211 1 1112235689999999999742 46999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 001980 807 DGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 886 (987)
Q Consensus 807 dG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 886 (987)
||+|+++++.+.+|++|+||||||++|+|||||||.++. +++|++++++++.+++++++.++|+||||.+||+|.+|||
T Consensus 401 dg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSG 479 (592)
T PRK10790 401 DGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSV 479 (592)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 999999999999999999999999999999999999987 6899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChh
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHS 966 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~ 966 (987)
||||||||||||+++|+|||||||||+||++|++.|++.|++..++||+|+||||++++..||+|++|++|+++|.|+|+
T Consensus 480 GqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~ 559 (592)
T PRK10790 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQ 559 (592)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHhhh
Q 001980 967 ELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 967 eLl~~~~g~f~~l~~~q~ 984 (987)
||+++ ++.|+++++.|.
T Consensus 560 ~L~~~-~~~y~~l~~~~~ 576 (592)
T PRK10790 560 QLLAA-QGRYWQMYQLQL 576 (592)
T ss_pred HHHhC-CCHHHHHHHHHh
Confidence 99988 799999998774
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-82 Score=780.70 Aligned_cols=567 Identities=27% Similarity=0.417 Sum_probs=497.3
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF 487 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (987)
+.+++.+.++.+..+...++++++..++....++++..+++....... ......+...++++.++..++.+++.++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~---~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 203 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG---LSTLSVLALAMLAVAIFEPALGGLRTYLF 203 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555566666666666666677777777766542211 11222334445555666778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001980 488 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV 567 (987)
Q Consensus 488 ~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 567 (987)
...+.+...++|.++|++++++|+.||+. .+.|++++|+ +|++.+++.+...+...+..++.+++.++++++++|.+
T Consensus 204 ~~~~~~~~~~l~~~~~~~l~~l~~~~f~~--~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 280 (694)
T TIGR01846 204 AHLTSRIDVELGARLYRHLLGLPLGYFES--RRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTL 280 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHcCC--CCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999985 7999999999 69999999998888888877777777788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001980 568 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 647 (987)
Q Consensus 568 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (987)
++++++++|+++++.++..+..++..++..+..++....+.|+++|+++||+||.++.+.++|.+..+...+...+..+.
T Consensus 281 ~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 360 (694)
T TIGR01846 281 TGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNL 360 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888777777777777777777888999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001980 648 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTR 727 (987)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~ 727 (987)
..+...+..++..+..++++|+|.+++..|.+++|.++++..+......|+..+......+.....+.+|+.++++.+++
T Consensus 361 ~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e 440 (694)
T TIGR01846 361 GNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTE 440 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999986654
Q ss_pred CCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC
Q 001980 728 IDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 807 (987)
Q Consensus 728 ~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~id 807 (987)
.+.. .....+...|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++|
T Consensus 441 ~~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~id 517 (694)
T TIGR01846 441 PRSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVD 517 (694)
T ss_pred ccCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 3221 111122345789999999999744 3469999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 001980 808 GKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 887 (987)
Q Consensus 808 G~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 887 (987)
|+|+++++.+++|++|+||||||++|+|||||||.++.++++++++++|++.+++++++.++|+||||.++++|.+||||
T Consensus 518 g~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgG 597 (694)
T TIGR01846 518 GVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGG 597 (694)
T ss_pred CEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhH
Q 001980 888 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 888 QrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~e 967 (987)
||||+||||||+++|+|||||||||+||+++++.+.+.|++..+++|+|+||||++++..||+|++|++|+|+|.|+|++
T Consensus 598 q~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~ 677 (694)
T TIGR01846 598 QRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEE 677 (694)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHHHhhh
Q 001980 968 LVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 968 Ll~~~~g~f~~l~~~q~ 984 (987)
|+++ +|.|++|++.|.
T Consensus 678 l~~~-~~~y~~l~~~~~ 693 (694)
T TIGR01846 678 LLAL-QGLYARLWQQQS 693 (694)
T ss_pred HHHc-CChHHHHHHhhc
Confidence 9987 799999998764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-82 Score=697.47 Aligned_cols=504 Identities=23% Similarity=0.342 Sum_probs=432.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001980 471 GAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNM 550 (987)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~ 550 (987)
++++...+..++..+..+....++...+|.++|+++...+..-.. ....|+++||+..|++.+|+.+-..+.+.+..+
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~--r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~ 143 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLL--RYRSGDLLNRLVADVDALDNLYLRVIAPAVVAL 143 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHH--hcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHH
Confidence 456777788888888889999999999999999999988776655 378999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHH
Q 001980 551 TSLLTSFIVAFIVEWRVSLLILGTY-PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSL 629 (987)
Q Consensus 551 ~~~~~~~~~~~~~~~~l~l~~l~~~-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~ 629 (987)
....+..+...+++|.+++.+...+ .+++++..+..++-++..+......+...+++.|.++|....+.||+++++.+.
T Consensus 144 ~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~ 223 (573)
T COG4987 144 VLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTA 223 (573)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHH
Confidence 8888888888788888877665544 344455666777777778888888899999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 001980 630 FCHELRVPQSQTLRRSLTAGILFGISQFALHASEA-LILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETV-SLAPE 707 (987)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 707 (987)
+.+..+...+...+.....++...+.+++..+..+ ..+|.++ .+..|..+......+.+..+....++.-+. ....+
T Consensus 224 l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~-~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~ 302 (573)
T COG4987 224 LEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAA-QVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQH 302 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence 99998888888888888888877777776666655 4455544 344555554333333333333333333333 44567
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChH
Q 001980 708 IIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKS 787 (987)
Q Consensus 708 ~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKS 787 (987)
..+...|+.|+.++.+++++...+.++ .+ .+.+ .++++||||+||+. ..++|+|+||++++||||||+||||||||
T Consensus 303 lgq~~~Sa~Rl~~i~~q~~e~~~~~~~-~~-~~~~-~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKS 378 (573)
T COG4987 303 LGQVIASARRLNDILDQKPEVTFPDEQ-TA-TTGQ-ALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKS 378 (573)
T ss_pred hhHHHHHHHHHhhhccCCcccCCCccc-cC-Cccc-eeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHH
Confidence 778888999999998877665433111 11 1112 79999999999876 45799999999999999999999999999
Q ss_pred HHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHh
Q 001980 788 SVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVS 867 (987)
Q Consensus 788 TL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~ 867 (987)
|++++|.|.|+|++|+|.++|.+++.++.+++|+.|++++|.+++|++|+|+||.+++|++||||+|+++++++++++++
T Consensus 379 TllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~ 458 (573)
T COG4987 379 TLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLE 458 (573)
T ss_pred HHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc
Q 001980 868 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG 947 (987)
Q Consensus 868 ~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~ 947 (987)
+.|+||+|++||+|.+||||||||+||||+||+|++++||||||.+||++||+.|.+.|.+..+|+|+|+||||+..+..
T Consensus 459 ~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~ 538 (573)
T COG4987 459 SAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER 538 (573)
T ss_pred hChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHh
Q 001980 948 VDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 982 (987)
Q Consensus 948 ~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~ 982 (987)
||||+|||+|+++|+|+|++|+++ +|.|++|++.
T Consensus 539 ~drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q~ 572 (573)
T COG4987 539 MDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQL 572 (573)
T ss_pred cCEEEEEECCeeeecCCHHhhhcc-ccHHHHHhcc
Confidence 999999999999999999999997 8999999863
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-83 Score=700.43 Aligned_cols=544 Identities=27% Similarity=0.416 Sum_probs=460.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 001980 433 GFIGPTFAIVMACMIEVFYYRNP-ASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEV 511 (987)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~ 511 (987)
.......+.++...++.....+. +.........+..|..+.+.+.++..++.+++.++.+++..+.-.++|.+.+++..
T Consensus 43 K~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~ 122 (591)
T KOG0057|consen 43 KILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDL 122 (591)
T ss_pred hHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34444445555555544421111 11112223456778888888999999999999999999999999999999999999
Q ss_pred cccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001980 512 GWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIV-AFIVEWRVSLLILGTYPLLVLANFAQQLSLK 590 (987)
Q Consensus 512 ~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~ 590 (987)
+||-. .++|.+.+...+....+...+...+..++..++.+...... ..-+.+..+++.+..+..+..+.+....+..
T Consensus 123 ~~~~~--~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn 200 (591)
T KOG0057|consen 123 SFFLS--RGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRN 200 (591)
T ss_pred HhhcC--CCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHH
Confidence 99975 68889988888888888888887777777666655544433 3334555555555555555555555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 591 GFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYG 670 (987)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 670 (987)
++.++...+.......+.|++.+..+||+||.|++..++|+..+..+.+...+.+...+++......+.....+.+...+
T Consensus 201 ~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~ 280 (591)
T KOG0057|consen 201 RFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLG 280 (591)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777788888888999999999999999999999999999999999999888888888888887777778888888888
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeE
Q 001980 671 VHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHV 750 (987)
Q Consensus 671 ~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~v 750 (987)
..=+..+.+++++++.+.....+...++..+.....++.++...+...+...+....... .+.+....+|.|+|+||
T Consensus 281 ~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~---~~~~i~~~~~~I~F~dV 357 (591)
T KOG0057|consen 281 SNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE---AALPIELFGGSIEFDDV 357 (591)
T ss_pred hhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh---ccCCcccCCCcEEEEee
Confidence 888888999999999888888888888988888888888888888877765443222111 11233345678999999
Q ss_pred EEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEcccc
Q 001980 751 DFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEP 830 (987)
Q Consensus 751 sf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp 830 (987)
+|.|+ |++++|+++||+|++||||||||+|||||||++++|+||+| ++|+|+|||+||++++++.+|+.||+||||.
T Consensus 358 ~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~ 434 (591)
T KOG0057|consen 358 HFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDS 434 (591)
T ss_pred EEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcc
Confidence 99996 34569999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred ccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 001980 831 ALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 910 (987)
Q Consensus 831 ~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEa 910 (987)
.||++||.+||.||++.+++||+.++||++++||.+.++|+||+|.|||+|..||||||||++||||+|++|+|+++|||
T Consensus 435 ~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEa 514 (591)
T KOG0057|consen 435 VLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEA 514 (591)
T ss_pred cccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhhhc
Q 001980 911 TSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHH 985 (987)
Q Consensus 911 TS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q~~ 985 (987)
||+||.+||+.|.++|.....++|+|+|+||++++++||+|+|||+|+|+|+|+|+||++ +.+.|+++|..|..
T Consensus 515 TS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~~~ 588 (591)
T KOG0057|consen 515 TSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQTS 588 (591)
T ss_pred ccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhccccc
Confidence 999999999999999999889999999999999999999999999999999999999999 58999999988753
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-81 Score=758.50 Aligned_cols=564 Identities=32% Similarity=0.516 Sum_probs=504.7
Q ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 411 LLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIM 490 (987)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (987)
++.+.++.++.++++++++++.+++.+..++++..+++....... ......+..+++++.++..++.+++.++..+.
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 81 (571)
T TIGR02203 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD---RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWV 81 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556677777777777777777777777777765443221 11222334456666777788888899999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001980 491 GENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLL 570 (987)
Q Consensus 491 ~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 570 (987)
+.+....+|..+++++++.|.++|+. .+.|++++|+++|++.++..+...+..++..++.++++++++++++|.++++
T Consensus 82 ~~~~~~~lr~~l~~~~~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i 159 (571)
T TIGR02203 82 SNKVVRDIRVRMFEKLLGLPVSFFDR--QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLI 159 (571)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999975 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001980 571 ILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGI 650 (987)
Q Consensus 571 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (987)
++++.|+.+++.++..+..+...++..+...+....+.|.++|+++||+++.++.+.++|.+..+...+...+..+...+
T Consensus 160 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (571)
T TIGR02203 160 VVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSI 239 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888899999999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 001980 651 LFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDP 730 (987)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~ 730 (987)
...+...+..+..++++++|..++..|.+++|.++++..+......|+..+......+.+...+.+|+.++++.+++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 319 (571)
T TIGR02203 240 SSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT 319 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 88888888888888999999999999999999999999999999999999999999999999999999999876543221
Q ss_pred CCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcc
Q 001980 731 DDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD 810 (987)
Q Consensus 731 ~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~d 810 (987)
. ..+..+..+.|+|+||+|+|+++ +.++|+|+||+|+|||+++|+|+||||||||+++|.|+|+|++|+|++||+|
T Consensus 320 ~---~~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~ 395 (571)
T TIGR02203 320 G---TRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD 395 (571)
T ss_pred C---CCCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEe
Confidence 1 11112345689999999999754 3479999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcccEEEccccccccccHHHHhccCCC-CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 811 IRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE-GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 811 i~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~-~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
+++++.+++|++++||||||++|+|||||||.++.+ +.+|++++++++.+++++++.++|+|+||++|++|.+||||||
T Consensus 396 i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqr 475 (571)
T TIGR02203 396 LADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQR 475 (571)
T ss_pred HHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHH
Confidence 999999999999999999999999999999999886 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHh
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl 969 (987)
||||||||++++|+|||||||||+||+++++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|+
T Consensus 476 QRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 476 QRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHhhh
Q 001980 970 SRPDGAYSRLLQLQH 984 (987)
Q Consensus 970 ~~~~g~f~~l~~~q~ 984 (987)
++ ++.|+++++.+.
T Consensus 556 ~~-~~~~~~~~~~~~ 569 (571)
T TIGR02203 556 AR-NGLYAQLHNMQF 569 (571)
T ss_pred Hc-CCHHHHHHHHhh
Confidence 87 789999988764
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-80 Score=750.54 Aligned_cols=565 Identities=28% Similarity=0.429 Sum_probs=482.1
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF 487 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (987)
+++++.+.++.++.+++.++++++..++....++++..+++..... .....+..+++++.++..+..++..++.
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (588)
T PRK13657 7 YARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGK------GDIFPLLAAWAGFGLFNIIAGVLVARHA 80 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666667777777777777777777777777654321 1112223333333344444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001980 488 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV 567 (987)
Q Consensus 488 ~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 567 (987)
.+...+....++.++|+++++.|..+|+. .+.|++++|+++|++.+...+...+..++..++.+++.+++++.++|.+
T Consensus 81 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 158 (588)
T PRK13657 81 DRLAHRRRLAVLTEYFERIIQLPLAWHSQ--RGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRL 158 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHCc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666667779999999999999974 7999999999999999999888888888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001980 568 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 647 (987)
Q Consensus 568 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (987)
++++++++|+.+++.+...+..+...++..+........+.|.++|+++||+|+.++.+.+++.+..+...+...+....
T Consensus 159 ~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (588)
T PRK13657 159 SLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSW 238 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888777777666667767777777788899999999999999999999999999999999988888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001980 648 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTR 727 (987)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~ 727 (987)
..+...+.+++..+..++++++|.+++..|.+++|.++++..+......++..+......+..+..+.+|+.+.++.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~ 318 (588)
T PRK13657 239 WALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPD 318 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 77777777788888888899999999999999999999999888888999999999999999999999999998876443
Q ss_pred CCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC
Q 001980 728 IDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 807 (987)
Q Consensus 728 ~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~id 807 (987)
.+.. +...+..+..+.|+|+||+|+|+++ .++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus 319 ~~~~-~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~ 395 (588)
T PRK13657 319 VRDP-PGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILID 395 (588)
T ss_pred cCCC-CCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEEC
Confidence 2111 1111112234679999999999743 359999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 001980 808 GKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 887 (987)
Q Consensus 808 G~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 887 (987)
|+|+++++.+++|++|+||||||++|+|||||||.++.++.+|++++++++.+++++++.++|+|+||.++++|.+||||
T Consensus 396 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 475 (588)
T PRK13657 396 GTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGG 475 (588)
T ss_pred CEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhH
Q 001980 888 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 888 QrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~e 967 (987)
|||||||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++.++.||+|++|++|+++|.|+|++
T Consensus 476 q~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~ 555 (588)
T PRK13657 476 ERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDE 555 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHHHhhh
Q 001980 968 LVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 968 Ll~~~~g~f~~l~~~q~ 984 (987)
|+++ ++.|++|++.+.
T Consensus 556 l~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 556 LVAR-GGRFAALLRAQG 571 (588)
T ss_pred HHHC-CChHHHHHHHhh
Confidence 9987 799999998663
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-80 Score=743.92 Aligned_cols=521 Identities=21% Similarity=0.265 Sum_probs=446.1
Q ss_pred HHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 412 LKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEF--VFIYIGAGLYAVVAYLIQHYFFSI 489 (987)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 489 (987)
+++.++.++.++..++++++..++....+++++.+++....... ....+ +..++++.+...++.++..++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (529)
T TIGR02868 5 LPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-----VLYLSVAAVAVRAFGIGRAVFRYLERLVGHD 79 (529)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666676777777777777765432211 11111 111223445566777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001980 490 MGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSL 569 (987)
Q Consensus 490 ~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 569 (987)
.+.+...++|.++|+++++.|..||++ +++|++++|+++|++.++..+...+..++..++.++++++++++++|.+++
T Consensus 80 ~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 157 (529)
T TIGR02868 80 AALRSLGRLRVRVYDRLARLALAGRRR--FQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAAL 157 (529)
T ss_pred HHHHHHHHHHHHHHHHhhccCcccccc--CChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999999975 789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001980 570 LILGTYPLLVLAN-FAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTA 648 (987)
Q Consensus 570 ~~l~~~pl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (987)
++++.+|++.++. ++..+..+...++.+...++...++.|.++|+++||+|++++.+.++|.+..+...+...+..+..
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02868 158 VLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARAT 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888877776554 444444455556666777888999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 001980 649 GILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRI 728 (987)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~ 728 (987)
.+...+..++..+..++.+|+|.+++..|.++.+.++++..+......++..+......+.+...+.+|+.++++.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 317 (529)
T TIGR02868 238 GLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPR 317 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 88888888888888888899999999999999999999888888888899998888999999999999999999765542
Q ss_pred CCCCCC-CCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC
Q 001980 729 DPDDPD-AEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 807 (987)
Q Consensus 729 ~~~~~~-~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~id 807 (987)
+..+.. ....++..+.|+|+||+|+|+++ .++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 318 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~ 395 (529)
T TIGR02868 318 PEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLD 395 (529)
T ss_pred CCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 211111 11112234679999999999753 359999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 001980 808 GKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 887 (987)
Q Consensus 808 G~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 887 (987)
|+|++++ .+++|++|+||||||+||+|||||||.++.++++|+++++|++.+++++++.++|+||||++||+|.+||||
T Consensus 396 g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 474 (529)
T TIGR02868 396 GVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGG 474 (529)
T ss_pred CEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCc
Q 001980 888 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRL 942 (987)
Q Consensus 888 QrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl 942 (987)
||||||||||++++|+|||||||||+||++||+.|++.+++..+++|+|+||||+
T Consensus 475 QrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 475 ERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999988999999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-80 Score=746.54 Aligned_cols=567 Identities=35% Similarity=0.555 Sum_probs=491.0
Q ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 411 LLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIM 490 (987)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (987)
++++.++.++.+.+.+++.++.+++....++.+..+++..+.... ......+..+++++.++..++.+++.++....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (576)
T TIGR02204 9 LWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS---SGLLNRYFAFLLVVALVLALGTAARFYLVTWL 85 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455566666666677777777777777777765432211 11122234444445555666777888888999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001980 491 GENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLL 570 (987)
Q Consensus 491 ~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 570 (987)
+.+....+|..+++++++.|.++|+. .+.|++++|+++|++.+++.+...+..++..++.+++++++++.++|.++++
T Consensus 86 ~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (576)
T TIGR02204 86 GERVVADIRRAVFAHLISLSPSFFDK--NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSL 163 (576)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999975 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001980 571 ILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGI 650 (987)
Q Consensus 571 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (987)
+++.+|+.++..++..+..++..++...........+.|.++|+++||+|+.++.+.++|.+..+...+...+......+
T Consensus 164 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (576)
T TIGR02204 164 VLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRAL 243 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888877777777777778888888888999999999999999999999999999999999888777777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 001980 651 LFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDP 730 (987)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~ 730 (987)
...+...+.+...++++++|.+++..|.++.|.++++..+......++..+.....++.....+.+|+.++++.+++.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 323 (576)
T TIGR02204 244 LTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA 323 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 66666666667777888899999999999999999999888889999999999999999999999999999876543221
Q ss_pred CCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcc
Q 001980 731 DDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD 810 (987)
Q Consensus 731 ~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~d 810 (987)
.........+..+.|+|+||+|+|+++.+.++|+|+||+|+|||+++|+|+||||||||+++|+|+|+|++|+|++||+|
T Consensus 324 ~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~ 403 (576)
T TIGR02204 324 PAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD 403 (576)
T ss_pred CCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 11111111223467999999999986433579999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 811 IRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 811 i~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
+++++.+++|++|+|+||||++|+|||||||.++.++.+|++++++++.+++.+++.++|+|+||+++|+|.+|||||||
T Consensus 404 i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 404 LRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred HHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 99999999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhc
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
||+||||++++|+|||||||||+||+++++.+.+.|++..+++|+|+||||++.+..+|+|++|++|+++|.|+|++|++
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred CCCchHHHHHHhh
Q 001980 971 RPDGAYSRLLQLQ 983 (987)
Q Consensus 971 ~~~g~f~~l~~~q 983 (987)
+ ++.|++|++.|
T Consensus 564 ~-~~~~~~l~~~~ 575 (576)
T TIGR02204 564 K-GGLYARLARLQ 575 (576)
T ss_pred c-CChHHHHHhhc
Confidence 6 89999999876
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-79 Score=739.23 Aligned_cols=565 Identities=28% Similarity=0.423 Sum_probs=484.2
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF 487 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (987)
+++++++.++.++.++..++++++..++....+++++.+++.....+. ...++.+++++.++..+..++..++.
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD------VLPTLALWAGFGVFNTIAYVLVAREA 80 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666677777777888888888888888888888876543211 11122222233333444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001980 488 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV 567 (987)
Q Consensus 488 ~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 567 (987)
.....+...++|.++|++++++|++||+. +++|++++|+++|++.+...+...+..++..++.+++.+++++.++|.+
T Consensus 81 ~~~~~~~~~~lr~~~~~~l~~l~~~~~~~--~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 158 (585)
T TIGR01192 81 DRLAHGRRATLLTEAFGRIISMPLSWHQQ--RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRL 158 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666677789999999999999985 7899999999999999999999888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001980 568 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 647 (987)
Q Consensus 568 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (987)
++++++++|+++++.....++.++..++.....+...+.+.|+++|+++||+|+.++.+.+++.+..+...+...+..+.
T Consensus 159 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (585)
T TIGR01192 159 SIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDW 238 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998988877777777777666667777788899999999999999999999999999999988888777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001980 648 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTR 727 (987)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~ 727 (987)
..+...+...+..+..++++++|.+++..|.+++|.++++..+......++..+......+..+..+.+|+.+..+.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 318 (585)
T TIGR01192 239 WALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQ 318 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 77777777777777788889999999999999999999998888888899999999999999999999999998876543
Q ss_pred CCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC
Q 001980 728 IDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 807 (987)
Q Consensus 728 ~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~id 807 (987)
..... .....+...+.|+|+||+|+|+++ .++|+|+||+|++||++||||+||||||||+++|.|+|+|++|+|++|
T Consensus 319 ~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~ 395 (585)
T TIGR01192 319 REEPA-DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILID 395 (585)
T ss_pred ccCCc-cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEEC
Confidence 22111 111112234679999999999743 358999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 001980 808 GKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 887 (987)
Q Consensus 808 G~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 887 (987)
|+|+++++.+++|++++||||||.+|++|++|||.++.+++++++++++++.+++++++.++|+|+||.+|++|.+||||
T Consensus 396 g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgG 475 (585)
T TIGR01192 396 GIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGG 475 (585)
T ss_pred CEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhH
Q 001980 888 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 888 QrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~e 967 (987)
|||||+|||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++
T Consensus 476 q~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 555 (585)
T TIGR01192 476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQE 555 (585)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HhcCCCchHHHHHHhhh
Q 001980 968 LVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 968 Ll~~~~g~f~~l~~~q~ 984 (987)
|+++ +|.|+++|+.|.
T Consensus 556 l~~~-~~~y~~l~~~~~ 571 (585)
T TIGR01192 556 LIQK-DGRFYKLLRRSG 571 (585)
T ss_pred HHHC-CChHHHHHHhCc
Confidence 9987 799999998774
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-80 Score=797.76 Aligned_cols=571 Identities=28% Similarity=0.477 Sum_probs=503.9
Q ss_pred CchHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001980 404 PDGYFLRLLKLNA-PEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLI 482 (987)
Q Consensus 404 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (987)
...++..++++.. .++..++++++++++.+++.++++++++.+++.+... .....+++.+++++++.+++.++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~------~~~~~~~~~~~~~~i~~~~~~~~ 116 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG------ENVNDIIFSLVLIGIFQFILSFI 116 (1466)
T ss_pred ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777754 4667788888999999999999999999988865421 11233455666777778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 483 QHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFI 562 (987)
Q Consensus 483 ~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 562 (987)
+.+++.+.+.+...++|.++|++++++|++|||. ++.|.+.+|++.|++.+...+...+..++..++.++++++++|+
T Consensus 117 ~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~--~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~ 194 (1466)
T PTZ00265 117 SSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDN--NPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF 194 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999996 57899999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHH
Q 001980 563 VEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTL 642 (987)
Q Consensus 563 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~ 642 (987)
++|.+++++++++|+++++.++..++++...++.+...+...+.+.|++.|+++||+|+.|+++.++|.+..+...+...
T Consensus 195 ~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~ 274 (1466)
T PTZ00265 195 KNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYIL 274 (1466)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888877777777777889999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 643 RRSLTAGILFGISQFALHASEALILWYGVHLVGKG--------VSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGES 714 (987)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 714 (987)
+.....++..++..++.++..++.+|+|.+++..| .++.+.+++++...+.....+..+...+..+..+..+
T Consensus 275 k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a 354 (1466)
T PTZ00265 275 KANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEA 354 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888999999999999999886 4778888877776666666666677777888899999
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHh
Q 001980 715 VGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIE 794 (987)
Q Consensus 715 ~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~ 794 (987)
++|+++.++.+++.++.. .+... +..+.|+|+||+|+|+++++.++|+|+||+|++||++||||+||||||||+++|.
T Consensus 355 ~~ri~~ii~~~~~~~~~~-~~~~~-~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~ 432 (1466)
T PTZ00265 355 TNSLYEIINRKPLVENND-DGKKL-KDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIE 432 (1466)
T ss_pred HHHHHHHHcCCCCCCCCC-CCccC-CCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999999998766543211 11111 1224799999999998665557999999999999999999999999999999999
Q ss_pred ccCCCCCceEEE-CCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCC---------------------------
Q 001980 795 RFYDPTAGKVMI-DGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE--------------------------- 846 (987)
Q Consensus 795 rl~~p~~G~I~i-dG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--------------------------- 846 (987)
|+|+|++|+|++ ||+|+++++.+++|++|++|||+|.||++||+|||.++..
T Consensus 433 gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1466)
T PTZ00265 433 RLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRN 512 (1466)
T ss_pred HhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccc
Confidence 999999999999 6799999999999999999999999999999999998631
Q ss_pred ------------------------------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 847 ------------------------------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 847 ------------------------------~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+.+|+++++|++.+++++|+.++|+||||.+|++|.+|||||||||||||
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIAR 592 (1466)
T PTZ00265 513 SCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIAR 592 (1466)
T ss_pred cccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCC-----------------
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDG----------------- 957 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~~D~Iivl~~G----------------- 957 (987)
||+++|+|||||||||+||+++++.|++.|++.. +++|+|+||||+++++.||+|+||++|
T Consensus 593 All~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~ 672 (1466)
T PTZ00265 593 AIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTK 672 (1466)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccc
Confidence 9999999999999999999999999999999986 489999999999999999999999986
Q ss_pred ------------------------------EEEEecChhHHhcCCCchHHHHHHhhh
Q 001980 958 ------------------------------RIVEQGSHSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 958 ------------------------------~ive~Gt~~eLl~~~~g~f~~l~~~q~ 984 (987)
+|+|+|+|+||+++++|.|+.|++.|.
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~ 729 (1466)
T PTZ00265 673 DNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQK 729 (1466)
T ss_pred cccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhc
Confidence 599999999999866999999998874
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-80 Score=739.17 Aligned_cols=541 Identities=25% Similarity=0.380 Sum_probs=469.1
Q ss_pred HHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Q 001980 436 GPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD 515 (987)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd 515 (987)
....+++++.+++........ ......|+.+++++.++..++.++..++....+.+...++|.++|+++++.|++||+
T Consensus 11 ~~~~p~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~ 88 (569)
T PRK10789 11 QLIPPKVVGIIVDGVTEQHMT--TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYL 88 (569)
T ss_pred HHHHHHHHHHHHHHhccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc
Confidence 344455566666544322111 111223444555555566677778888888899999999999999999999999997
Q ss_pred cCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 001980 516 EEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVA-FIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAG 594 (987)
Q Consensus 516 ~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~ 594 (987)
. +++|++++|+++|++.+...+...+..++..++.++++++++ +.++|.+++++++++|+.+++.+...+..++..+
T Consensus 89 ~--~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~ 166 (569)
T PRK10789 89 R--HRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFK 166 (569)
T ss_pred C--CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 789999999999999999888888888887766666665555 5789999999999889888877777777777677
Q ss_pred HHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 595 DTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLV 674 (987)
Q Consensus 595 ~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv 674 (987)
+.+...+.....+.|.++|+++||+|+.++.+.++|.+..+...+...+..+.......+.+....+..++++++|.+++
T Consensus 167 ~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv 246 (569)
T PRK10789 167 LAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMV 246 (569)
T ss_pred HHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888999999999999999999999999999999998888888877777777767677777777788889999999
Q ss_pred HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEEC
Q 001980 675 GKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAY 754 (987)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y 754 (987)
..|.+++|.++++..+......|+..+......+.....+.+|+.++++.+++.+... .+.++..+.|+|+||+|+|
T Consensus 247 ~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~~~y 323 (569)
T PRK10789 247 VNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQFTY 323 (569)
T ss_pred HcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEEEEC
Confidence 9999999999999999988899999999999999999999999999987654322111 1112335689999999999
Q ss_pred CCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEcccccccc
Q 001980 755 PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA 834 (987)
Q Consensus 755 ~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~ 834 (987)
++. +.++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++||+|+++++.+++|++++||||+|++|+
T Consensus 324 ~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~ 402 (569)
T PRK10789 324 PQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS 402 (569)
T ss_pred CCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeecc
Confidence 753 3469999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 001980 835 ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 914 (987)
Q Consensus 835 gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~L 914 (987)
+||||||.++.+++++++++++++.+++++++.++|+|+||.+|++|.+||||||||++||||++++|+|||||||||+|
T Consensus 403 ~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~L 482 (569)
T PRK10789 403 DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAV 482 (569)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccC
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhhhc
Q 001980 915 DAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHH 985 (987)
Q Consensus 915 D~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q~~ 985 (987)
|+++++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|+++ ++.|++|++.|..
T Consensus 483 D~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 483 DGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence 999999999999998889999999999999999999999999999999999999987 7899999987643
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-82 Score=670.14 Aligned_cols=491 Identities=31% Similarity=0.449 Sum_probs=435.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 001980 485 YFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIV-AFIV 563 (987)
Q Consensus 485 ~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~~~ 563 (987)
.++...++.+...+--+.|.|+..+++.|.-. ..+|-+..........++..+...+...+..++-+...+++ ...+
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~--r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE--RRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhh--cccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 45667777888888889999999999999865 34444444445555566666666666666666655554444 4457
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHH
Q 001980 564 EWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLR 643 (987)
Q Consensus 564 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~ 643 (987)
+|+.+++.++++.+++++.....-..-.+.|+...+.+.......+++-+.+|+|.||.|+.+..+|...++.+.+...+
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 89999888888888887776665555666778888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001980 644 RSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLD 723 (987)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~ 723 (987)
.+....++......+...........+...+..|.++.|+++..-.++.....|+........++.++...+++.+++++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 88888888888888888888888888888999999999999988888888888988888888999999999999999988
Q ss_pred ccCCCCCCCCCCCCCC-CccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCc
Q 001980 724 RSTRIDPDDPDAEPVE-TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802 (987)
Q Consensus 724 ~~~~~~~~~~~~~~~~-~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G 802 (987)
.+.+... .+..++.+ -..|.|.|+||+|.|. |..|+|+++||++++|+++||||+||+||||+.++|+||||+++|
T Consensus 242 ~~~~v~d-~pda~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 242 VEAEVSD-APDAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred cchhhcc-CCCCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 7665432 22333334 3468899999999995 456899999999999999999999999999999999999999999
Q ss_pred eEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCC
Q 001980 803 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGV 882 (987)
Q Consensus 803 ~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~ 882 (987)
.|.|||+||+++..+.+|+.||+||||.+||+.|+..|+.+|+|+++++|++.|++.+++++||+++|+||||.|||+|-
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEe
Q 001980 883 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 962 (987)
Q Consensus 883 ~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~ 962 (987)
.||||||||+||||++|++|+||+||||||+||..||+.||.+|++..+++|.++|||||+||.++|.|+||++|+|+|.
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhcCCCchHHHHHH
Q 001980 963 GSHSELVSRPDGAYSRLLQ 981 (987)
Q Consensus 963 Gt~~eLl~~~~g~f~~l~~ 981 (987)
|+|+||+++ +|.|++||.
T Consensus 479 g~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 479 GTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred CcHHHHHHc-CChHHHHhc
Confidence 999999998 999999996
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-77 Score=716.99 Aligned_cols=527 Identities=24% Similarity=0.302 Sum_probs=454.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 420 PYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVR 499 (987)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 499 (987)
+.+..+++++++.+++....+++.+.+++....... .......+..++++++++..++.++..++....+.+...++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 3 RALALLGLLGALGALLIIAQAWLLARVIDGLISAGE--PLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777777788888887776531111 111223345556666677788888999999999999999999
Q ss_pred HHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001980 500 RMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLV 579 (987)
Q Consensus 500 ~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~ 579 (987)
.++|+++++.|..||+. .++|++++|+++|++.++..+...+..++..++.+++++++++.++|.+++++++.+|+.+
T Consensus 81 ~~l~~~l~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~ 158 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQG--RPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIP 158 (529)
T ss_pred HHHHHHHHhCCchhhcc--CChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999974 7999999999999999999999999999999888888899999999999999998888887
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 580 LANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFAL 659 (987)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (987)
++.+...++.+...++.+....+....+.|+++|+++||+|+.++.+.++|.+..++..+...+..+.......+..++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02857 159 IFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666667777777788899999999999999999999999999999988888877777776666666666666
Q ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCC
Q 001980 660 HASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVE 739 (987)
Q Consensus 660 ~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~ 739 (987)
.+...++..++...+..|.++++.++++..+......++..+......+.+...+.+|+.++++.+++..+. . ....
T Consensus 239 ~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~--~-~~~~ 315 (529)
T TIGR02857 239 TLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK--A-PVTA 315 (529)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--c-CCCC
Confidence 665555555555666689999999998888888888899999999999999999999999999744321111 1 1111
Q ss_pred CccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH
Q 001980 740 TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 819 (987)
Q Consensus 740 ~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l 819 (987)
+..+.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++||+|+++++.+++
T Consensus 316 ~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 316 APAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred CCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHH
Confidence 123679999999999754 3469999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 820 RLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 820 R~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
|++++||||||++|+|||||||.++.++++|++++++++.++++++++++|+||||++||+|.+||||||||++||||++
T Consensus 395 r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~ 474 (529)
T TIGR02857 395 RDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFL 474 (529)
T ss_pred HhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEE
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVV 954 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl 954 (987)
++|+|||||||||+||++|++.|++.|++..+++|+|+||||+++++.||+|+||
T Consensus 475 ~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 475 RDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-79 Score=688.99 Aligned_cols=481 Identities=31% Similarity=0.493 Sum_probs=371.8
Q ss_pred cEEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC----ccEEEECCEeCCCCCHHH
Q 001980 99 NIEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN----AGHVLLDNVDIKTLQLRW 173 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~-~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~----~G~i~~~g~~~~~~~~~~ 173 (987)
-++++|++..|..... ..+++||||++.+||++||||+|||||||++++|.|++++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999975422 35899999999999999999999999999999999999987 899999999998887654
Q ss_pred H---h-cceEEEcCCCC-Cchh--cHHHHHhc----CCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccc--cCCCCCCC
Q 001980 174 L---R-DQIGLVNQEPA-LFAT--TILENILY----GKPEATMAEVEAAASAANAHSFITLLPNGYSTQV--GERGVQLS 240 (987)
Q Consensus 174 ~---~-~~i~~v~Q~~~-l~~~--tv~eni~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~--~~~g~~LS 240 (987)
+ | +.|+|+||+|+ .+|. ||.+-|.- ... ...++.. ..+.+.++.. |+.... ...+.+||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~-~~~~ea~-----~~a~elL~~V--gl~~~~~~~~yPheLS 156 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK-GSRAEAR-----KRAVELLEQV--GLPDPERRDRYPHQLS 156 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc-ccHHHHH-----HHHHHHHHHc--CCCChhhhccCCcccC
Confidence 3 3 46999999984 3433 66665542 111 1111111 1112223322 332222 55888999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEe
Q 001980 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVET 317 (987)
Q Consensus 241 gGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~ 317 (987)
||||||+.||+||+.+|++||+||||++||+.++..|.+.|+++. .|.++|+||||+..+.. ||||+||++|+++|.
T Consensus 157 GG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~ 236 (539)
T COG1123 157 GGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVET 236 (539)
T ss_pred chHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999986 48999999999999876 899999999999999
Q ss_pred cChHHHHHhhh-hHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccc
Q 001980 318 GTHEELIAKAG-AYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAE 396 (987)
Q Consensus 318 g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (987)
|+.++++++.. .|....
T Consensus 237 G~~~~i~~~p~hpYT~~L-------------------------------------------------------------- 254 (539)
T COG1123 237 GPTEEILSNPQHPYTRGL-------------------------------------------------------------- 254 (539)
T ss_pred cCHHHHHhccCCcccHHH--------------------------------------------------------------
Confidence 99999875310 000000
Q ss_pred cccCCCCCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHH
Q 001980 397 TDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYA 476 (987)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (987)
+. ..
T Consensus 255 ---------------l~---------------------------------------a~---------------------- 258 (539)
T COG1123 255 ---------------LA---------------------------------------AV---------------------- 258 (539)
T ss_pred ---------------Hh---------------------------------------hC----------------------
Confidence 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 477 VVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTS 556 (987)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~ 556 (987)
| ..+... ..
T Consensus 259 ---------------------------------p--~~~~~~-~~----------------------------------- 267 (539)
T COG1123 259 ---------------------------------P--RLGDEK-II----------------------------------- 267 (539)
T ss_pred ---------------------------------C--Cccccc-cc-----------------------------------
Confidence 0 000000 00
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhH
Q 001980 557 FIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRV 636 (987)
Q Consensus 557 ~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~ 636 (987)
T Consensus 268 -------------------------------------------------------------------------------- 267 (539)
T COG1123 268 -------------------------------------------------------------------------------- 267 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 637 PQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVG 716 (987)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 716 (987)
T Consensus 268 -------------------------------------------------------------------------------- 267 (539)
T COG1123 268 -------------------------------------------------------------------------------- 267 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCC--------CccceeeeeEEEeCCcEEEEEcCCCCChHH
Q 001980 717 SVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRP--------DVVVFKDFNLRIRAGQSQALVGASGSGKSS 788 (987)
Q Consensus 717 ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~--------~~~vL~~vsl~I~~Ge~vaIVG~sGsGKST 788 (987)
..+... + . +...-++++|++.+|..+. ...+++||||+|++||++||||+|||||||
T Consensus 268 ------~~~~~~-~--~------~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKST 332 (539)
T COG1123 268 ------RLPRRG-P--L------RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKST 332 (539)
T ss_pred ------cccccc-c--c------ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHH
Confidence 000000 0 0 0112489999999997421 236899999999999999999999999999
Q ss_pred HHHHHhccCCCCCceEEECCcc--CCCCCHHHHhcccEEEccccccc---cccHHHHhccCCC---C----CCHHHHHHH
Q 001980 789 VIALIERFYDPTAGKVMIDGKD--IRRLNLKSLRLKIGLVQQEPALF---AASIFDNIAYGKE---G----ATEAEVVEA 856 (987)
Q Consensus 789 L~~lL~rl~~p~~G~I~idG~d--i~~i~l~~lR~~i~~VpQdp~lF---~gTIreNL~~~~~---~----~sd~ei~~a 856 (987)
|.++|+|+++|++|+|.++|.| ++.-....+|+++-+|+|||+-. ..||+++|.-+.. . ...+.+.+.
T Consensus 333 lar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~l 412 (539)
T COG1123 333 LARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAEL 412 (539)
T ss_pred HHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHH
Confidence 9999999999999999999977 34334566889999999999742 4699999864321 1 112346666
Q ss_pred HHHcCchh-hHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CC
Q 001980 857 ARAANVHG-FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GR 933 (987)
Q Consensus 857 l~~a~l~~-~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~ 933 (987)
++.+++.. +..+- ...||||||||+||||||..+|++||+|||||+||+.+.+.|.+.|.++.+ |.
T Consensus 413 l~~VgL~~~~l~ry-----------P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~ 481 (539)
T COG1123 413 LELVGLPPEFLDRY-----------PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGL 481 (539)
T ss_pred HHHcCCCHHHHhcC-----------chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCC
Confidence 77887764 33333 356999999999999999999999999999999999999999999998764 79
Q ss_pred eEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHh
Q 001980 934 TTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 982 (987)
Q Consensus 934 TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~ 982 (987)
|.|+|||+++.++. ||||+||++|+|||.|+.+++.+++...|.+....
T Consensus 482 t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~ 531 (539)
T COG1123 482 TYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLA 531 (539)
T ss_pred EEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHHH
Confidence 99999999999987 89999999999999999999999999999876543
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-76 Score=704.22 Aligned_cols=537 Identities=24% Similarity=0.342 Sum_probs=457.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 419 WPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRV 498 (987)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 498 (987)
++.++..++++++..++....++++..+++....... ......+..+++++.++..++.+++.++....+.+...++
T Consensus 5 k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 5 KSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS---VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666667777777777765542211 1112234445555566677888888999999999999999
Q ss_pred HHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001980 499 RRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAD-RISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPL 577 (987)
Q Consensus 499 ~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl 577 (987)
|.++|+++++.|+..+ +...+++++|++.++..+.. .+..++..++.++ .+++++.++|.+++++++.+|+
T Consensus 82 r~~~~~~ll~~~~~~~-------~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l 153 (544)
T TIGR01842 82 NQPIFAASFSATLRRG-------KIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVV 153 (544)
T ss_pred HHHHHHHHhcCcccCc-------cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999998533 34678899999999998877 4455555555444 4467888999999988888887
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001980 578 LVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQF 657 (987)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (987)
++++.++..+..++..++.+...++....+.|+++|+++||+|+.++.+.++|.+..++..+...+.....+....+...
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (544)
T TIGR01842 154 LVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKY 233 (544)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666666666667777778888999999999999999999999999999999998888887777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCC
Q 001980 658 ALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEP 737 (987)
Q Consensus 658 ~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~ 737 (987)
+..+..++++++|.+++..|.+++|.++++..+......++..+......+.....+.+|+.++++.+++..+. .+
T Consensus 234 ~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~ 309 (544)
T TIGR01842 234 FRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MP 309 (544)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----CC
Confidence 77777788889999999999999999999999988899999999999999999999999999998765432211 11
Q ss_pred CCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH
Q 001980 738 VETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK 817 (987)
Q Consensus 738 ~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~ 817 (987)
.++..+.|+++||+|+|++. +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+
T Consensus 310 ~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~ 388 (544)
T TIGR01842 310 LPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRE 388 (544)
T ss_pred CCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHH
Confidence 12234679999999999753 34699999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 818 SLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 818 ~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
.+|++++||||||++|++|+||||.++.+++++++++++++.++++++++++|+|+||.+|++|.+||||||||++||||
T Consensus 389 ~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARa 468 (544)
T TIGR01842 389 TFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARA 468 (544)
T ss_pred HHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999998777789999999999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcC
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
++++|+|||||||||+||+++++.+.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|++|+++
T Consensus 469 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 469 LYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred HhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999999999999875 68999999999999999999999999999999999999753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-76 Score=707.39 Aligned_cols=497 Identities=26% Similarity=0.381 Sum_probs=368.1
Q ss_pred cEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC----------
Q 001980 99 NIEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK---------- 167 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~---------- 167 (987)
.|+++|++++|+... ..++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 599999999996321 246999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-cceEEEcCCC--CCchh-cHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCc---ccccC
Q 001980 168 TLQLR---WLR-DQIGLVNQEP--ALFAT-TILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYS---TQVGE 234 (987)
Q Consensus 168 ~~~~~---~~~-~~i~~v~Q~~--~l~~~-tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~---t~~~~ 234 (987)
..+.. .+| ++||||+|+| .+++. ||+||+.++.. .....+.. ..+.+.++.+ |+. .....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~ 164 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM-----VEAKRMLDQV--RIPEAQTILSR 164 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChhhHHhC
Confidence 12222 233 4799999998 57764 99999987521 11111111 1122334444 542 34577
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCcccc-CCEEEEEeC
Q 001980 235 RGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQ 311 (987)
Q Consensus 235 ~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~~l~~ 311 (987)
...+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.++++. + |+|+|+|||+++.+.. ||||++|++
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~ 244 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ 244 (623)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeC
Confidence 788999999999999999999999999999999999999999999999985 3 8999999999999865 899999999
Q ss_pred CEEEEecChHHHHHhhh-hHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccc
Q 001980 312 GQVVETGTHEELIAKAG-AYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIE 390 (987)
Q Consensus 312 G~i~~~g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (987)
|++++.|+++++..... .|..... . .... .. .
T Consensus 245 G~i~~~g~~~~~~~~~~~~~~~~l~---------~-----------~~~~-------------~~--------------~ 277 (623)
T PRK10261 245 GEAVETGSVEQIFHAPQHPYTRALL---------A-----------AVPQ-------------LG--------------A 277 (623)
T ss_pred CeecccCCHHHhhcCCCChhhhhhh---------h-----------ccCc-------------cc--------------c
Confidence 99999999887643210 0000000 0 0000 00 0
Q ss_pred cccccccccCCCCCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHH
Q 001980 391 MVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYI 470 (987)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (987)
. .. .
T Consensus 278 ~------------------------------------------------------------~~--~-------------- 281 (623)
T PRK10261 278 M------------------------------------------------------------KG--L-------------- 281 (623)
T ss_pred c------------------------------------------------------------cc--c--------------
Confidence 0 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 001980 471 GAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNM 550 (987)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~ 550 (987)
..+ .-+... ..
T Consensus 282 -------------------------------------~~~-~~~~~~--~~----------------------------- 292 (623)
T PRK10261 282 -------------------------------------DYP-RRFPLI--SL----------------------------- 292 (623)
T ss_pred -------------------------------------cCC-cccccc--cc-----------------------------
Confidence 000 000000 00
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHH
Q 001980 551 TSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLF 630 (987)
Q Consensus 551 ~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~ 630 (987)
T Consensus 293 -------------------------------------------------------------------------------- 292 (623)
T PRK10261 293 -------------------------------------------------------------------------------- 292 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 631 CHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIR 710 (987)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (987)
...
T Consensus 293 -------~~~---------------------------------------------------------------------- 295 (623)
T PRK10261 293 -------EHP---------------------------------------------------------------------- 295 (623)
T ss_pred -------ccc----------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCC--------CccceeeeeEEEeCCcEEEEEcCC
Q 001980 711 GGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRP--------DVVVFKDFNLRIRAGQSQALVGAS 782 (987)
Q Consensus 711 ~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~--------~~~vL~~vsl~I~~Ge~vaIVG~s 782 (987)
. ...+.......+ ....-|+++||+++|+.+. ..++|+||||+|++||++||+|+|
T Consensus 296 ---------~-~~~~~~~~~~~~------~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~n 359 (623)
T PRK10261 296 ---------A-KQEPPIEQDTVV------DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGES 359 (623)
T ss_pred ---------c-ccCccccccccc------CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCC
Confidence 0 000000000000 0011499999999996311 235999999999999999999999
Q ss_pred CCChHHHHHHHhccCCCCCceEEECCccCCCCCHH---HHhcccEEEccccc--ccc-ccHHHHhccCC--CCC-C----
Q 001980 783 GSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLRLKIGLVQQEPA--LFA-ASIFDNIAYGK--EGA-T---- 849 (987)
Q Consensus 783 GsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~---~lR~~i~~VpQdp~--lF~-gTIreNL~~~~--~~~-s---- 849 (987)
|||||||+++|.|+.+|++|+|.++|.++..++.. .+|++|+||||+|. ++. .|+++|+.++. ... .
T Consensus 360 GsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~ 439 (623)
T PRK10261 360 GSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAA 439 (623)
T ss_pred CCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHH
Confidence 99999999999999999999999999999877643 46788999999983 664 59999987531 111 1
Q ss_pred HHHHHHHHHHcCch-hhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 001980 850 EAEVVEAARAANVH-GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALER 928 (987)
Q Consensus 850 d~ei~~al~~a~l~-~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~ 928 (987)
++++.+.++.+++. +.... .+ ..||||||||++|||||+.+|+|||||||||+||+.+.+.|.+.|++
T Consensus 440 ~~~~~~~L~~~gL~~~~~~~-------~~----~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~ 508 (623)
T PRK10261 440 AARVAWLLERVGLLPEHAWR-------YP----HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD 508 (623)
T ss_pred HHHHHHHHHHcCCCHHHhhC-------Cc----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 23456677777774 33322 22 46999999999999999999999999999999999999999999988
Q ss_pred HcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCCchHHH
Q 001980 929 LMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 978 (987)
Q Consensus 929 ~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~ 978 (987)
..+ +.|+|+|||+++.+.. ||||+||++|+|+|.|++++++.++...|.+
T Consensus 509 l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 509 LQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTR 561 (623)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHH
Confidence 753 7899999999999876 8999999999999999999998876666754
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-76 Score=699.36 Aligned_cols=459 Identities=23% Similarity=0.412 Sum_probs=357.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEeCCCCCHHH-Hh
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP--NAGHVLLDNVDIKTLQLRW-LR 175 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~-~~ 175 (987)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+|+|+|+++| ++|+|.++|.++...+... ++
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999973 3589999999999999999999999999999999999996 8999999999997766543 46
Q ss_pred cceEEEcCCCCCchh-cHHHHHhcCCCC-----CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 176 DQIGLVNQEPALFAT-TILENILYGKPE-----ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
+.++|++|++.+++. |++||+.++... ...++..+ .+.+.++.+ |+.........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 789999999988865 999999986431 11112111 123345554 66555677788999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
||||+.+|++|||||||++||+.++..+.+.|.++. +|+|+|++||+++.+.. ||+|++|++|+++..|+.+++....
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 234 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTEDD 234 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCHHH
Confidence 999999999999999999999999999999998875 48999999999999875 8999999999998876533210000
Q ss_pred hhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCchH
Q 001980 328 GAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGY 407 (987)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (987)
.
T Consensus 235 -----~-------------------------------------------------------------------------- 235 (506)
T PRK13549 235 -----I-------------------------------------------------------------------------- 235 (506)
T ss_pred -----H--------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF 487 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (987)
+..+
T Consensus 236 ---------------------------------------~~~~------------------------------------- 239 (506)
T PRK13549 236 ---------------------------------------ITMM------------------------------------- 239 (506)
T ss_pred ---------------------------------------HHHh-------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001980 488 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV 567 (987)
Q Consensus 488 ~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 567 (987)
+..+ .
T Consensus 240 --------------------------~~~~---~---------------------------------------------- 244 (506)
T PRK13549 240 --------------------------VGRE---L---------------------------------------------- 244 (506)
T ss_pred --------------------------hCcC---c----------------------------------------------
Confidence 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001980 568 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 647 (987)
Q Consensus 568 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (987)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001980 648 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTR 727 (987)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~ 727 (987)
. ...+.
T Consensus 245 --------------------------------------------------------------------~------~~~~~ 250 (506)
T PRK13549 245 --------------------------------------------------------------------T------ALYPR 250 (506)
T ss_pred --------------------------------------------------------------------c------ccccc
Confidence 0 00000
Q ss_pred CCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-CCCceEEE
Q 001980 728 IDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-PTAGKVMI 806 (987)
Q Consensus 728 ~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-p~~G~I~i 806 (987)
... + +....|+++|++++|+.+.+.++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+
T Consensus 251 ~~~--~------~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~ 322 (506)
T PRK13549 251 EPH--T------IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFI 322 (506)
T ss_pred ccc--C------CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEE
Confidence 000 0 00114899999999953223459999999999999999999999999999999999998 59999999
Q ss_pred CCccCCCCCH-HHHhcccEEEcccc---ccc-cccHHHHhccCCC-C------CCH----HHHHHHHHHcCchhhHhhCC
Q 001980 807 DGKDIRRLNL-KSLRLKIGLVQQEP---ALF-AASIFDNIAYGKE-G------ATE----AEVVEAARAANVHGFVSALP 870 (987)
Q Consensus 807 dG~di~~i~l-~~lR~~i~~VpQdp---~lF-~gTIreNL~~~~~-~------~sd----~ei~~al~~a~l~~~i~~lp 870 (987)
+|.++...+. +.+|++++||||++ .+| ..|+.+|+.++.. . .+. +++.+.++..++.+
T Consensus 323 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------ 396 (506)
T PRK13549 323 DGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT------ 396 (506)
T ss_pred CCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC------
Confidence 9999875543 45678899999997 355 4699999976421 0 111 23444455544421
Q ss_pred CcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-c
Q 001980 871 NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-V 948 (987)
Q Consensus 871 ~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~ 948 (987)
+-.+.++ ..||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. |
T Consensus 397 ~~~~~~~----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~ 472 (506)
T PRK13549 397 ASPELAI----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLS 472 (506)
T ss_pred CCccccc----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhC
Confidence 1123333 4699999999999999999999999999999999999999999999864 58899999999998865 8
Q ss_pred CEEEEEeCCEEEEecChhHHh
Q 001980 949 DCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 949 D~Iivl~~G~ive~Gt~~eLl 969 (987)
|++++|++|+++..|+++++.
T Consensus 473 d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 473 DRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred CEEEEEECCEEEEEeccccCC
Confidence 999999999999999988773
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-75 Score=695.41 Aligned_cols=469 Identities=28% Similarity=0.457 Sum_probs=360.1
Q ss_pred cEEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCCCHH
Q 001980 99 NIEFKNVTFSYPSR-PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTLQLR 172 (987)
Q Consensus 99 ~i~~~~~~~~y~~~-~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~ 172 (987)
.++++|++++|++. ...++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124689999999999999999999999999999999999987 799999999998776543
Q ss_pred ---HHh-cceEEEcCCCC--Cch-hcHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCcc---cccCCCCCC
Q 001980 173 ---WLR-DQIGLVNQEPA--LFA-TTILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYST---QVGERGVQL 239 (987)
Q Consensus 173 ---~~~-~~i~~v~Q~~~--l~~-~tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~t---~~~~~g~~L 239 (987)
.+| ++|+|++|+|. +++ .|+++|+.++.. .....+..+ .+.+.++.+ |+.. .......+|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~~L 157 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARG-----EILNCLDRV--GIRQAAKRLTDYPHQL 157 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHC--CCCChHHHHhhCCccc
Confidence 233 57999999985 444 499999874310 111111111 112334443 4432 246677899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEE
Q 001980 240 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVE 316 (987)
Q Consensus 240 SgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~ 316 (987)
|||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. .|+|+|+|||+++.+.. ||||++|++|++++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 37999999999998875 89999999999999
Q ss_pred ecChHHHHHhhhhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccc
Q 001980 317 TGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAE 396 (987)
Q Consensus 317 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (987)
.|+.+++..... . .
T Consensus 238 ~g~~~~~~~~~~-------------------------------~------------------~----------------- 251 (529)
T PRK15134 238 QNRAATLFSAPT-------------------------------H------------------P----------------- 251 (529)
T ss_pred eCCHHHHhhCCC-------------------------------C------------------H-----------------
Confidence 887765521100 0 0
Q ss_pred cccCCCCCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHH
Q 001980 397 TDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYA 476 (987)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (987)
+.+ .
T Consensus 252 -----------~~~--------------------------------------~--------------------------- 255 (529)
T PRK15134 252 -----------YTQ--------------------------------------K--------------------------- 255 (529)
T ss_pred -----------HHH--------------------------------------H---------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 477 VVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTS 556 (987)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~ 556 (987)
+++ .+ +
T Consensus 256 -------------------------~~~----~~---------~------------------------------------ 261 (529)
T PRK15134 256 -------------------------LLN----SE---------P------------------------------------ 261 (529)
T ss_pred -------------------------HHH----hC---------c------------------------------------
Confidence 000 00 0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhH
Q 001980 557 FIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRV 636 (987)
Q Consensus 557 ~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~ 636 (987)
T Consensus 262 -------------------------------------------------------------------------------- 261 (529)
T PRK15134 262 -------------------------------------------------------------------------------- 261 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 637 PQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVG 716 (987)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 716 (987)
T Consensus 262 -------------------------------------------------------------------------------- 261 (529)
T PRK15134 262 -------------------------------------------------------------------------------- 261 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCC--------CCccceeeeeEEEeCCcEEEEEcCCCCChHH
Q 001980 717 SVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSR--------PDVVVFKDFNLRIRAGQSQALVGASGSGKSS 788 (987)
Q Consensus 717 ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~--------~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKST 788 (987)
...+. .+ .... ...|+++|++++|+.. .+.++|+|+||+|++||++||+|+|||||||
T Consensus 262 ------~~~~~-~~-~~~~------~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKST 327 (529)
T PRK15134 262 ------SGDPV-PL-PEPA------SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKST 327 (529)
T ss_pred ------ccccc-cc-CCCC------CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHH
Confidence 00000 00 0000 1148999999999521 1246999999999999999999999999999
Q ss_pred HHHHHhccCCCCCceEEECCccCCCCCHHH---HhcccEEEcccc--cccc-ccHHHHhccCCC----CCC----HHHHH
Q 001980 789 VIALIERFYDPTAGKVMIDGKDIRRLNLKS---LRLKIGLVQQEP--ALFA-ASIFDNIAYGKE----GAT----EAEVV 854 (987)
Q Consensus 789 L~~lL~rl~~p~~G~I~idG~di~~i~l~~---lR~~i~~VpQdp--~lF~-gTIreNL~~~~~----~~s----d~ei~ 854 (987)
|+++|.|+++ ++|+|.+||.++..++... +|++++||||++ .+|. .|+++|+.++.. ... ++.+.
T Consensus 328 Llk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~ 406 (529)
T PRK15134 328 TGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVI 406 (529)
T ss_pred HHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHH
Confidence 9999999984 8999999999998776543 478899999998 3665 599999976421 011 23455
Q ss_pred HHHHHcCch-hhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--
Q 001980 855 EAARAANVH-GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-- 931 (987)
Q Consensus 855 ~al~~a~l~-~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~-- 931 (987)
++++..++. +... . ...+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+
T Consensus 407 ~~l~~~~l~~~~~~-------~----~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 475 (529)
T PRK15134 407 AVMEEVGLDPETRH-------R----YPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKH 475 (529)
T ss_pred HHHHHcCCCHHHHh-------c----CCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhh
Confidence 666666664 2222 2 2346999999999999999999999999999999999999999999998752
Q ss_pred CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCCchH
Q 001980 932 GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAY 976 (987)
Q Consensus 932 ~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~g~f 976 (987)
++|||+|||+++.+.. ||+|++|++|+|++.|+++++++.+...|
T Consensus 476 ~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 521 (529)
T PRK15134 476 QLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEY 521 (529)
T ss_pred CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcCCCChH
Confidence 7899999999998865 89999999999999999999987654444
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-75 Score=688.00 Aligned_cols=456 Identities=21% Similarity=0.380 Sum_probs=354.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-Hhcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 177 (987)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999974 34899999999999999999999999999999999999999999999999998776654 3457
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCCC---------CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHH
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPEA---------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRi 247 (987)
|+|++|++.+++. |++||+.++.... ...+.. ..+.+.++.+ |+.........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMR-----VRAAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 9999999988876 9999998763210 111111 1123344444 665556777889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
+|||||+.+|++|||||||++||+.++..+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 99999999999999999999999999999999999885 48999999999999875 89999999999988876554311
Q ss_pred hhhhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCc
Q 001980 326 KAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPD 405 (987)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (987)
.. ...
T Consensus 235 ~~-----~~~---------------------------------------------------------------------- 239 (510)
T PRK09700 235 DD-----IVR---------------------------------------------------------------------- 239 (510)
T ss_pred HH-----HHH----------------------------------------------------------------------
Confidence 00 000
Q ss_pred hHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 406 GYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHY 485 (987)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (987)
..
T Consensus 240 -------------------------------------------~~----------------------------------- 241 (510)
T PRK09700 240 -------------------------------------------LM----------------------------------- 241 (510)
T ss_pred -------------------------------------------Hh-----------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001980 486 FFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEW 565 (987)
Q Consensus 486 ~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (987)
+.....+
T Consensus 242 ----------------------------~~~~~~~--------------------------------------------- 248 (510)
T PRK09700 242 ----------------------------VGRELQN--------------------------------------------- 248 (510)
T ss_pred ----------------------------cCCCccc---------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHH
Q 001980 566 RVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRS 645 (987)
Q Consensus 566 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (987)
T Consensus 249 -------------------------------------------------------------------------------- 248 (510)
T PRK09700 249 -------------------------------------------------------------------------------- 248 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 001980 646 LTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRS 725 (987)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~ 725 (987)
+ .....
T Consensus 249 -----------------------------------------------------------------------~---~~~~~ 254 (510)
T PRK09700 249 -----------------------------------------------------------------------R---FNAMK 254 (510)
T ss_pred -----------------------------------------------------------------------c---ccccc
Confidence 0 00000
Q ss_pred CCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEE
Q 001980 726 TRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 805 (987)
Q Consensus 726 ~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~ 805 (987)
+. +..+. ....|+++|+++.|. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.
T Consensus 255 ~~--~~~~~------~~~~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~ 321 (510)
T PRK09700 255 EN--VSNLA------HETVFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIR 321 (510)
T ss_pred cc--cccCC------CCcEEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEE
Confidence 00 00000 011499999999762 289999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCCH-HHHhcccEEEcccc---cccc-ccHHHHhccCCCC-----------CCH----HHHHHHHHHcCchhh
Q 001980 806 IDGKDIRRLNL-KSLRLKIGLVQQEP---ALFA-ASIFDNIAYGKEG-----------ATE----AEVVEAARAANVHGF 865 (987)
Q Consensus 806 idG~di~~i~l-~~lR~~i~~VpQdp---~lF~-gTIreNL~~~~~~-----------~sd----~ei~~al~~a~l~~~ 865 (987)
++|.++...+. +.+|++++||||++ .+|. -|+++|+.++... ... +++.++++..++.
T Consensus 322 ~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-- 399 (510)
T PRK09700 322 LNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK-- 399 (510)
T ss_pred ECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC--
Confidence 99999876543 45778999999984 4665 5999999865210 011 2234455554442
Q ss_pred HhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchh
Q 001980 866 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLST 944 (987)
Q Consensus 866 i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~t 944 (987)
++..+.+++ .||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.
T Consensus 400 ----~~~~~~~~~----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~ 471 (510)
T PRK09700 400 ----CHSVNQNIT----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPE 471 (510)
T ss_pred ----CCCccCccc----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 022344444 599999999999999999999999999999999999999999999864 57899999999998
Q ss_pred hhc-cCEEEEEeCCEEEEecChhH
Q 001980 945 IRG-VDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 945 i~~-~D~Iivl~~G~ive~Gt~~e 967 (987)
+.. ||+|++|++|++++.+++.+
T Consensus 472 ~~~~~d~i~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 472 IITVCDRIAVFCEGRLTQILTNRD 495 (510)
T ss_pred HHhhCCEEEEEECCEEEEEecCcc
Confidence 754 89999999999999887633
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-72 Score=671.50 Aligned_cols=534 Identities=16% Similarity=0.149 Sum_probs=433.4
Q ss_pred HHHHHHHHhC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 407 YFLRLLKLNA-PEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHY 485 (987)
Q Consensus 407 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (987)
..++++++.+ +.++.++++++++++.++.....++++..+++.. .. ... ..+..++++.++..++.++..+
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~----~~--~~~--~~~~~~~~~~~~~~~~~~~~~~ 75 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEE----NF--LGQ--GSLFSFGGLCLLALLFRIGADI 75 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----Cc--ccc--hHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777 7888888887777777776666666555554311 00 000 1122234445566677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001980 486 FFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEW 565 (987)
Q Consensus 486 ~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (987)
+....+.+...++|.++|+++++.|+.||++ +++|++++|+++|++.++..+.. +..++..++.++++++++++++|
T Consensus 76 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 152 (555)
T TIGR01194 76 FPAYAGMHIIANLRIALCEKILGAPIEEIDR--RGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSV 152 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHh--cCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH
Confidence 8999999999999999999999999999985 79999999999999999998864 77778888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHH--HHHHHHHHHHhHHHHHHHH
Q 001980 566 RVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQN--KILSLFCHELRVPQSQTLR 643 (987)
Q Consensus 566 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~--~~~~~~~~~~~~~~~~~~~ 643 (987)
.+++++++.+|+.+++..+..++.++..++.+...+.....+.|.+.|++++|+|+.++ ...+++.+..+...+...+
T Consensus 153 ~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
T TIGR01194 153 PMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII 232 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999988888877777666666666666777777888999999999999999999954 5567777777777666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001980 644 RSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLD 723 (987)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~ 723 (987)
..........+...+......+.++++... +.++.|.++++..+......|+..+......+.++..+.+|+.++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~ 309 (555)
T TIGR01194 233 EILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGE 309 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444555433 78999999999999999999999999999999999999999999976
Q ss_pred ccCCCCCC--CCCCC-----CCCCccccEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHh
Q 001980 724 RSTRIDPD--DPDAE-----PVETIRGEIELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIE 794 (987)
Q Consensus 724 ~~~~~~~~--~~~~~-----~~~~~~g~I~f~~vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~ 794 (987)
.+.+.++. .+... ++....+.|+|+||+|+|++.+ ..++|+|+||+|++||++|||||||||||||+++|.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~ 389 (555)
T TIGR01194 310 RFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFC 389 (555)
T ss_pred hhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 32111110 01000 1112346899999999997532 236999999999999999999999999999999999
Q ss_pred ccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCC
Q 001980 795 RFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYK 874 (987)
Q Consensus 795 rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gld 874 (987)
|+|+|++|+|++||+|+++++.+++|+++++|||||++|++|+++|+ .+++++++++++++.+++++++..+|+|||
T Consensus 390 g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~ 466 (555)
T TIGR01194 390 GLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFS 466 (555)
T ss_pred CCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccC
Confidence 99999999999999999999999999999999999999999999996 356789999999999999999999999999
Q ss_pred CccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHH-H-cCCCeEEEEecCchhhhccCEEE
Q 001980 875 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALER-L-MRGRTTVLVAHRLSTIRGVDCIG 952 (987)
Q Consensus 875 t~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~-~-~~~~TvI~IaHRl~ti~~~D~Ii 952 (987)
|. .+|||||||||+||||++++|+|||||||||+||++|++.+++.+.+ . .+++|+|+||||++++..||+|+
T Consensus 467 t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~ 541 (555)
T TIGR01194 467 TT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQII 541 (555)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEE
Confidence 95 68999999999999999999999999999999999999999987753 3 36899999999999999999999
Q ss_pred EEeCCEEEEe
Q 001980 953 VVQDGRIVEQ 962 (987)
Q Consensus 953 vl~~G~ive~ 962 (987)
||++|+++|.
T Consensus 542 ~l~~G~i~~~ 551 (555)
T TIGR01194 542 KLAAGCIVKD 551 (555)
T ss_pred EEECCEEEEe
Confidence 9999999985
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-74 Score=684.40 Aligned_cols=451 Identities=24% Similarity=0.387 Sum_probs=352.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-Hhcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 177 (987)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 35899999999999999999999999999999999999999999999999987655433 4567
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCCC------CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHH
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPEA------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialA 250 (987)
++|++|++.+++. |++||+.++.... ...+..+ .+.+.++.+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 9999999988865 9999999864211 1111111 122344444 565556677789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhhh
Q 001980 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKAG 328 (987)
Q Consensus 251 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 328 (987)
|||+.+|++|||||||++||+.+++.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|+.+++....
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~- 232 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDS- 232 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCHHH-
Confidence 99999999999999999999999999999998875 47899999999999865 8999999999998776433221000
Q ss_pred hHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCchHH
Q 001980 329 AYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYF 408 (987)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (987)
+
T Consensus 233 ----~--------------------------------------------------------------------------- 233 (501)
T PRK10762 233 ----L--------------------------------------------------------------------------- 233 (501)
T ss_pred ----H---------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 409 LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFS 488 (987)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (987)
...+
T Consensus 234 --------------------------------------~~~~-------------------------------------- 237 (501)
T PRK10762 234 --------------------------------------IEMM-------------------------------------- 237 (501)
T ss_pred --------------------------------------HHHh--------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001980 489 IMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVS 568 (987)
Q Consensus 489 ~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 568 (987)
+...
T Consensus 238 -------------------------~~~~--------------------------------------------------- 241 (501)
T PRK10762 238 -------------------------VGRK--------------------------------------------------- 241 (501)
T ss_pred -------------------------cCCC---------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001980 569 LLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTA 648 (987)
Q Consensus 569 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (987)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 001980 649 GILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRI 728 (987)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~ 728 (987)
. . ...+..
T Consensus 242 ---------------------------------------------------------------------~-~--~~~~~~ 249 (501)
T PRK10762 242 ---------------------------------------------------------------------L-E--DQYPRL 249 (501)
T ss_pred ---------------------------------------------------------------------c-c--cccccc
Confidence 0 0 000000
Q ss_pred CCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 001980 729 DPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808 (987)
Q Consensus 729 ~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG 808 (987)
+ .+ +..-.|+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||
T Consensus 250 -~-~~------~~~~~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g 313 (501)
T PRK10762 250 -D-KA------PGEVRLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDG 313 (501)
T ss_pred -c-cC------CCCcEEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 0 00 0011489999984 269999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCH-HHHhcccEEEcccc---ccc-cccHHHHhccCCCC--------CC----HHHHHHHHHHcCchhhHhhCCC
Q 001980 809 KDIRRLNL-KSLRLKIGLVQQEP---ALF-AASIFDNIAYGKEG--------AT----EAEVVEAARAANVHGFVSALPN 871 (987)
Q Consensus 809 ~di~~i~l-~~lR~~i~~VpQdp---~lF-~gTIreNL~~~~~~--------~s----d~ei~~al~~a~l~~~i~~lp~ 871 (987)
.++...+. +.+|++++||||+| .+| ..|+++|+.++... .+ ++++.++++..++.+ +
T Consensus 314 ~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~ 387 (501)
T PRK10762 314 HEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT------P 387 (501)
T ss_pred EECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC------C
Confidence 99987665 34678899999997 344 46999999764210 11 123444455544420 1
Q ss_pred cCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cC
Q 001980 872 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VD 949 (987)
Q Consensus 872 gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D 949 (987)
-.+.+ ...||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||
T Consensus 388 ~~~~~----~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d 463 (501)
T PRK10762 388 SMEQA----IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSD 463 (501)
T ss_pred CccCc----hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCC
Confidence 12333 34699999999999999999999999999999999999999999999875 47899999999998865 79
Q ss_pred EEEEEeCCEEEEecChhHHh
Q 001980 950 CIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 950 ~Iivl~~G~ive~Gt~~eLl 969 (987)
+|++|++|++++.|+++++.
T Consensus 464 ~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 464 RILVMHEGRISGEFTREQAT 483 (501)
T ss_pred EEEEEECCEEEEEeccccCC
Confidence 99999999999999887763
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-74 Score=688.11 Aligned_cols=457 Identities=26% Similarity=0.453 Sum_probs=350.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEEC---------------
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY--DPNAGHVLLD--------------- 162 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~--~~~~G~i~~~--------------- 162 (987)
|+++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 478999999963 35899999999999999999999999999999999996 7999999997
Q ss_pred --------CEeCC-------CCC---HHHHhcceEEEcCC-CCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHH
Q 001980 163 --------NVDIK-------TLQ---LRWLRDQIGLVNQE-PALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSF 220 (987)
Q Consensus 163 --------g~~~~-------~~~---~~~~~~~i~~v~Q~-~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~ 220 (987)
|.++. ..+ ...+++.++|++|+ +.+++. |++||+.++... ....+.. ..+.+.
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~ 152 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAV-----GRAVDL 152 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHH
Confidence 22221 111 12356789999998 577764 999999875321 1111111 112234
Q ss_pred HHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCC
Q 001980 221 ITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLS 298 (987)
Q Consensus 221 ~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~ 298 (987)
++.+ |++........+||||||||++|||||+.+|++|||||||++||+.+++++.+.|+++. .|+|||+|||+++
T Consensus 153 l~~~--gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 153 IEMV--QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHc--CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 4444 66555667788999999999999999999999999999999999999999999999884 3899999999999
Q ss_pred cccc-CCEEEEEeCCEEEEecChHHHHHhhhhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccc
Q 001980 299 TIRN-VDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNL 377 (987)
Q Consensus 299 ~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (987)
.+.. ||+|++|++|+++..|+++++.... .
T Consensus 231 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~------~------------------------------------------- 261 (520)
T TIGR03269 231 VIEDLSDKAIWLENGEIKEEGTPDEVVAVF------M------------------------------------------- 261 (520)
T ss_pred HHHHhcCEEEEEeCCEEeeecCHHHHHHHH------H-------------------------------------------
Confidence 9865 8999999999998776554331100 0
Q ss_pred cccccCCCCcccccccccccccCCCCCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcch
Q 001980 378 SYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPAS 457 (987)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (987)
T Consensus 262 -------------------------------------------------------------------------------- 261 (520)
T TIGR03269 262 -------------------------------------------------------------------------------- 261 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHH
Q 001980 458 MERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKS 537 (987)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~ 537 (987)
..
T Consensus 262 ---------------------------------------------------------~~--------------------- 263 (520)
T TIGR03269 262 ---------------------------------------------------------EG--------------------- 263 (520)
T ss_pred ---------------------------------------------------------hh---------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHH
Q 001980 538 AIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTV 617 (987)
Q Consensus 538 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI 617 (987)
+ .
T Consensus 264 ---------------------------~---------------------------~------------------------ 265 (520)
T TIGR03269 264 ---------------------------V---------------------------S------------------------ 265 (520)
T ss_pred ---------------------------c---------------------------h------------------------
Confidence 0 0
Q ss_pred HHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Q 001980 618 AAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANS 697 (987)
Q Consensus 618 raf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~ 697 (987)
T Consensus 266 -------------------------------------------------------------------------------- 265 (520)
T TIGR03269 266 -------------------------------------------------------------------------------- 265 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCC--CCCccceeeeeEEEeCCcE
Q 001980 698 VAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPS--RPDVVVFKDFNLRIRAGQS 775 (987)
Q Consensus 698 ~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~--~~~~~vL~~vsl~I~~Ge~ 775 (987)
+. ..... .+ .. ...|+++|++++|++ +...++|+|+||+|++||+
T Consensus 266 -------------------~~----~~~~~-~~---~~------~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~ 312 (520)
T TIGR03269 266 -------------------EV----EKECE-VE---VG------EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEI 312 (520)
T ss_pred -------------------hh----ccccc-cC---CC------CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCE
Confidence 00 00000 00 00 114999999999953 1124699999999999999
Q ss_pred EEEEcCCCCChHHHHHHHhccCCCCCceEEEC-Cc---cCCCCC---HHHHhcccEEEcccccccc-ccHHHHhccCCC-
Q 001980 776 QALVGASGSGKSSVIALIERFYDPTAGKVMID-GK---DIRRLN---LKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE- 846 (987)
Q Consensus 776 vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~id-G~---di~~i~---l~~lR~~i~~VpQdp~lF~-gTIreNL~~~~~- 846 (987)
+||+|+||||||||+++|.|+++|++|+|.++ |. ++...+ ...+|++++|+||++.+|. .|+++|+.++..
T Consensus 313 ~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~ 392 (520)
T TIGR03269 313 FGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL 392 (520)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc
Confidence 99999999999999999999999999999996 64 344332 2356788999999998886 599999975311
Q ss_pred CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 001980 847 GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 922 (987)
Q Consensus 847 ~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I 922 (987)
.. .++++.++++..++.+.- ..+-++.++ ..||||||||++|||||+.+|+||||||||++||+.+.+.+
T Consensus 393 ~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l 466 (520)
T TIGR03269 393 ELPDELARMKAVITLKMVGFDEEK--AEEILDKYP----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDV 466 (520)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCcc--chhhhhCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 11 123455666666664310 000123333 46999999999999999999999999999999999999999
Q ss_pred HHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001980 923 QEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 923 ~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
.+.|++.. .+.|||+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 467 ~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 467 THSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999875 27899999999999875 89999999999999999998864
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-74 Score=679.57 Aligned_cols=453 Identities=25% Similarity=0.394 Sum_probs=351.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL-RWLRDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ 177 (987)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999974 348999999999999999999999999999999999999999999999999875543 456778
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCC-----CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPE-----ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
|+|++|++.+++. |++||+.++... ....+..+ .+.+.++.+ |+.........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 9999999988876 999999986421 11111111 123445554 5555556777899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhhhh
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKAGA 329 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 329 (987)
||+.+|+++||||||++||+.+++.+.+.|.++. +|+|+|+|||+++.+.. ||+|++|++|+++..++..+.
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~------ 227 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQ------ 227 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCcccc------
Confidence 9999999999999999999999999999999875 48999999999999865 899999999999754321000
Q ss_pred HHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCchHHH
Q 001980 330 YASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFL 409 (987)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (987)
... +
T Consensus 228 ----------------------------~~~---------------------------------~--------------- 231 (501)
T PRK11288 228 ----------------------------VDR---------------------------------D--------------- 231 (501)
T ss_pred ----------------------------CCH---------------------------------H---------------
Confidence 000 0
Q ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 410 RLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSI 489 (987)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (987)
.+ .
T Consensus 232 ~~-----------------------------------~------------------------------------------ 234 (501)
T PRK11288 232 QL-----------------------------------V------------------------------------------ 234 (501)
T ss_pred HH-----------------------------------H------------------------------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001980 490 MGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSL 569 (987)
Q Consensus 490 ~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 569 (987)
... .... .
T Consensus 235 --------------~~~-------~~~~---~------------------------------------------------ 242 (501)
T PRK11288 235 --------------QAM-------VGRE---I------------------------------------------------ 242 (501)
T ss_pred --------------HHh-------cCCC---c------------------------------------------------
Confidence 000 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001980 570 LILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAG 649 (987)
Q Consensus 570 ~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (987)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 001980 650 ILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRID 729 (987)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~ 729 (987)
. ..... .
T Consensus 243 ------------------------------------------------------------------~------~~~~~-~ 249 (501)
T PRK11288 243 ------------------------------------------------------------------G------DIYGY-R 249 (501)
T ss_pred ------------------------------------------------------------------c------ccccc-c
Confidence 0 00000 0
Q ss_pred CCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCc
Q 001980 730 PDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK 809 (987)
Q Consensus 730 ~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~ 809 (987)
+. + +.+..++++|++++ .+++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.
T Consensus 250 ~~-~------~~~~~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~ 315 (501)
T PRK11288 250 PR-P------LGEVRLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGK 315 (501)
T ss_pred cc-C------CCCcEEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCE
Confidence 00 0 00114899999842 3899999999999999999999999999999999999999999999999
Q ss_pred cCCCCC-HHHHhcccEEEccccc---cc-cccHHHHhccCCCCC--------C----HHHHHHHHHHcCchhhHhhCCCc
Q 001980 810 DIRRLN-LKSLRLKIGLVQQEPA---LF-AASIFDNIAYGKEGA--------T----EAEVVEAARAANVHGFVSALPNA 872 (987)
Q Consensus 810 di~~i~-l~~lR~~i~~VpQdp~---lF-~gTIreNL~~~~~~~--------s----d~ei~~al~~a~l~~~i~~lp~g 872 (987)
++...+ .+.+|++++|+||+|. +| ..|+.+|+.++.... . ++++.+.++..++. ++-
T Consensus 316 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~ 389 (501)
T PRK11288 316 PIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK------TPS 389 (501)
T ss_pred ECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcc------cCC
Confidence 987543 3456789999999973 55 579999997642110 1 12344445554441 112
Q ss_pred CCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCE
Q 001980 873 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDC 950 (987)
Q Consensus 873 ldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~ 950 (987)
.+++++ +||||||||++|||||+.+|++|||||||++||+.+.+.+++.|+++. .+.|||+|||+++.+.. ||+
T Consensus 390 ~~~~~~----~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~ 465 (501)
T PRK11288 390 REQLIM----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADR 465 (501)
T ss_pred ccCccc----cCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCE
Confidence 344444 699999999999999999999999999999999999999999998875 47899999999998865 799
Q ss_pred EEEEeCCEEEEecChhHHh
Q 001980 951 IGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 951 Iivl~~G~ive~Gt~~eLl 969 (987)
|++|++|++++.|++++..
T Consensus 466 i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 466 IVVMREGRIAGELAREQAT 484 (501)
T ss_pred EEEEECCEEEEEEccccCC
Confidence 9999999999999988764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-74 Score=680.23 Aligned_cols=457 Identities=23% Similarity=0.371 Sum_probs=350.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEeCCCCCHHH-Hhc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP--NAGHVLLDNVDIKTLQLRW-LRD 176 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~-~~~ 176 (987)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .++
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999963 3589999999999999999999999999999999999987 7999999999998766543 456
Q ss_pred ceEEEcCCCCCchh-cHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHHhCCCCCcccc-cCCCCCCChHHHHHHH
Q 001980 177 QIGLVNQEPALFAT-TILENILYGKPE------ATMAEVEAAASAANAHSFITLLPNGYSTQV-GERGVQLSGGQKQRIA 248 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~-tv~eni~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~-~~~g~~LSgGqkqRia 248 (987)
+|+|++|++.+++. |++||+.++... ...++..+ .+.+.++.+ |+.... .....+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence 79999999988865 999999886421 11111111 123344444 444332 3456789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 249 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|||||+.+|++|||||||++||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++..|+.+++...
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSED 231 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCCHH
Confidence 9999999999999999999999999999999998875 48899999999999876 899999999999865432110000
Q ss_pred hhhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCch
Q 001980 327 AGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDG 406 (987)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (987)
T Consensus 232 -------------------------------------------------------------------------------- 231 (500)
T TIGR02633 232 -------------------------------------------------------------------------------- 231 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 407 YFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYF 486 (987)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (987)
.. ...+
T Consensus 232 ---~~-----------------------------------~~~~------------------------------------ 237 (500)
T TIGR02633 232 ---DI-----------------------------------ITMM------------------------------------ 237 (500)
T ss_pred ---HH-----------------------------------HHHH------------------------------------
Confidence 00 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001980 487 FSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWR 566 (987)
Q Consensus 487 ~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (987)
+... .
T Consensus 238 ---------------------------~~~~---~--------------------------------------------- 242 (500)
T TIGR02633 238 ---------------------------VGRE---I--------------------------------------------- 242 (500)
T ss_pred ---------------------------hCcc---c---------------------------------------------
Confidence 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHH
Q 001980 567 VSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL 646 (987)
Q Consensus 567 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (987)
T Consensus 243 -------------------------------------------------------------------------------- 242 (500)
T TIGR02633 243 -------------------------------------------------------------------------------- 242 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 001980 647 TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRST 726 (987)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 726 (987)
. . ..+
T Consensus 243 ---------------------------------------------------------------------~---~--~~~- 247 (500)
T TIGR02633 243 ---------------------------------------------------------------------T---S--LYP- 247 (500)
T ss_pred ---------------------------------------------------------------------c---c--ccc-
Confidence 0 0 000
Q ss_pred CCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-CCceEE
Q 001980 727 RIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-TAGKVM 805 (987)
Q Consensus 727 ~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-~~G~I~ 805 (987)
.. + .+. .+-.|+++|++++|+.+.+.++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.
T Consensus 248 ~~-~-~~~------~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~ 319 (500)
T TIGR02633 248 HE-P-HEI------GDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVF 319 (500)
T ss_pred cc-c-cCC------CCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 00 0 000 01148999999999432123589999999999999999999999999999999999995 899999
Q ss_pred ECCccCCCCCH-HHHhcccEEEcccc---cccc-ccHHHHhccCCC-------CCC----HHHHHHHHHHcCchhhHhhC
Q 001980 806 IDGKDIRRLNL-KSLRLKIGLVQQEP---ALFA-ASIFDNIAYGKE-------GAT----EAEVVEAARAANVHGFVSAL 869 (987)
Q Consensus 806 idG~di~~i~l-~~lR~~i~~VpQdp---~lF~-gTIreNL~~~~~-------~~s----d~ei~~al~~a~l~~~i~~l 869 (987)
++|.++...+. ..+|++++|+||++ .+|. .|+++|+.++.. ... .+++.++++..++.+
T Consensus 320 ~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----- 394 (500)
T TIGR02633 320 INGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT----- 394 (500)
T ss_pred ECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC-----
Confidence 99999875443 56788999999996 3554 699999976421 011 123445555554421
Q ss_pred CCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-
Q 001980 870 PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG- 947 (987)
Q Consensus 870 p~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~- 947 (987)
.-.+.++ ..||||||||++|||||+++|++|||||||++||+.+...+++.|++.. ++.|||+|||+++.+..
T Consensus 395 -~~~~~~~----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~ 469 (500)
T TIGR02633 395 -ASPFLPI----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGL 469 (500)
T ss_pred -CCccCcc----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 1123444 4699999999999999999999999999999999999999999998864 57899999999999865
Q ss_pred cCEEEEEeCCEEEEecChhHH
Q 001980 948 VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 948 ~D~Iivl~~G~ive~Gt~~eL 968 (987)
||+|++|++|+++..++.+++
T Consensus 470 ~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 470 SDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred CCEEEEEECCEEEEEEccccC
Confidence 799999999999988765543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-73 Score=673.67 Aligned_cols=462 Identities=22% Similarity=0.383 Sum_probs=356.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHh-cc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR-DQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~ 177 (987)
.|+++|++++|++ ..+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 5999999999974 3489999999999999999999999999999999999999999999999999877665544 46
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
++|++|++.+++. |++||+.++.... .+..+ .+.+.++.+ |+.........+||||||||++|||||+.+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKR--QASMQ-----KMKQLLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccc--hHHHH-----HHHHHHHHc--CCCccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999988876 9999999875321 11111 112334444 555556777889999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhhhhHHHHH
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKAGAYASLI 334 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 334 (987)
|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.... ..
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~-----~~ 233 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD-----II 233 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHH-----HH
Confidence 99999999999999999999999999875 48999999999998865 8999999999999998877653210 00
Q ss_pred HHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCchHHHHHHHH
Q 001980 335 RFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKL 414 (987)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (987)
. ... .. . ...
T Consensus 234 ~--~~~-~~-~------------~~~------------------------------------------------------ 243 (510)
T PRK15439 234 Q--AIT-PA-A------------REK------------------------------------------------------ 243 (510)
T ss_pred H--HHh-Cc-c------------ccc------------------------------------------------------
Confidence 0 000 00 0 000
Q ss_pred hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 415 NAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENL 494 (987)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (987)
T Consensus 244 -------------------------------------------------------------------------------- 243 (510)
T PRK15439 244 -------------------------------------------------------------------------------- 243 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001980 495 TTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGT 574 (987)
Q Consensus 495 ~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~ 574 (987)
.+ . ..
T Consensus 244 ---------------~~-----~--~~----------------------------------------------------- 248 (510)
T PRK15439 244 ---------------SL-----S--AS----------------------------------------------------- 248 (510)
T ss_pred ---------------cc-----c--cc-----------------------------------------------------
Confidence 00 0 00
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001980 575 YPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGI 654 (987)
Q Consensus 575 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (987)
.
T Consensus 249 ---------------------------------------------------------------~---------------- 249 (510)
T PRK15439 249 ---------------------------------------------------------------Q---------------- 249 (510)
T ss_pred ---------------------------------------------------------------c----------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 001980 655 SQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPD 734 (987)
Q Consensus 655 ~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~ 734 (987)
+. . ...+.. .+..+
T Consensus 250 --------------------------------------------------------------~~-~-~~~~~~-~~~~~- 263 (510)
T PRK15439 250 --------------------------------------------------------------KL-W-LELPGN-RRQQA- 263 (510)
T ss_pred --------------------------------------------------------------cc-c-cccccc-ccccC-
Confidence 00 0 000000 00000
Q ss_pred CCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCC
Q 001980 735 AEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL 814 (987)
Q Consensus 735 ~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i 814 (987)
+.+-.|+++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|.++...
T Consensus 264 -----~~~~~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~ 330 (510)
T PRK15439 264 -----AGAPVLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINAL 330 (510)
T ss_pred -----CCCceEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCC
Confidence 0011489999983 159999999999999999999999999999999999999999999999999877
Q ss_pred CHHH-HhcccEEEcccc---cccc-ccHHHHhccCC----CC--CC---HHHHHHHHHHcCchhhHhhCCCcCCCccCCC
Q 001980 815 NLKS-LRLKIGLVQQEP---ALFA-ASIFDNIAYGK----EG--AT---EAEVVEAARAANVHGFVSALPNAYKTPVGER 880 (987)
Q Consensus 815 ~l~~-lR~~i~~VpQdp---~lF~-gTIreNL~~~~----~~--~s---d~ei~~al~~a~l~~~i~~lp~gldt~vge~ 880 (987)
+... +|++|+|+||++ .+|. .|+.+|+.... +. .. ++.+.++++..++. ++..+.++
T Consensus 331 ~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~--- 401 (510)
T PRK15439 331 STAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK------FNHAEQAA--- 401 (510)
T ss_pred CHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCC------CCCccCcc---
Confidence 6654 467899999996 3565 59999985320 10 01 12234444444432 12234444
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCE
Q 001980 881 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGR 958 (987)
Q Consensus 881 G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ 958 (987)
..||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||+|++|++|+
T Consensus 402 -~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~ 480 (510)
T PRK15439 402 -RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGE 480 (510)
T ss_pred -ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 4699999999999999999999999999999999999999999999875 47899999999999876 89999999999
Q ss_pred EEEecChhHHhc
Q 001980 959 IVEQGSHSELVS 970 (987)
Q Consensus 959 ive~Gt~~eLl~ 970 (987)
++..|+++++..
T Consensus 481 i~~~~~~~~~~~ 492 (510)
T PRK15439 481 ISGALTGAAINV 492 (510)
T ss_pred EEEEEccccCCH
Confidence 999999988754
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-73 Score=598.27 Aligned_cols=471 Identities=32% Similarity=0.493 Sum_probs=366.0
Q ss_pred cEEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCCCHH
Q 001980 99 NIEFKNVTFSYPSR-PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTLQLR 172 (987)
Q Consensus 99 ~i~~~~~~~~y~~~-~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~ 172 (987)
-++++|++..|... ....++++|||+|++||.+||||+||||||-..+.++|+++. -+|+|.++|.++-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 48899999988632 245689999999999999999999999999999999999974 379999999999888776
Q ss_pred HHhc----ceEEEcCCCC--Cchh-cHHHHHh----cCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCc---ccccCCCCC
Q 001980 173 WLRD----QIGLVNQEPA--LFAT-TILENIL----YGKPEATMAEVEAAASAANAHSFITLLPNGYS---TQVGERGVQ 238 (987)
Q Consensus 173 ~~~~----~i~~v~Q~~~--l~~~-tv~eni~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---t~~~~~g~~ 238 (987)
.+|+ +|++++|+|. |-+- ||...|. +... +......+...+.++.. |+. -.+...+.+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg------~~~~~Ar~r~lelL~~V--gI~~p~~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRG------LSRAAARARALELLELV--GIPEPEKRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHHc--CCCchhhhhhhCCcc
Confidence 6553 7999999994 3232 5555443 3211 11111111122222221 332 245677889
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEE
Q 001980 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVV 315 (987)
Q Consensus 239 LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~ 315 (987)
|||||||||.||.||+.+|++||.||||.|||...+..|.+.|+++.+ |..+++||||+..+++ ||||+||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 999999999999999999999999999999999999999999999853 8999999999999987 7999999999999
Q ss_pred EecChHHHHHhh-hhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccc
Q 001980 316 ETGTHEELIAKA-GAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSN 394 (987)
Q Consensus 316 ~~g~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (987)
|+|+.+++++.. ..|.+..
T Consensus 238 E~~~t~~lF~~PqHpYTr~L------------------------------------------------------------ 257 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKL------------------------------------------------------------ 257 (534)
T ss_pred ecCcHHHHhhCCCChHHHHH------------------------------------------------------------
Confidence 999877765431 0010000
Q ss_pred cccccCCCCCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHH
Q 001980 395 AETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGL 474 (987)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (987)
T Consensus 258 -------------------------------------------------------------------------------- 257 (534)
T COG4172 258 -------------------------------------------------------------------------------- 257 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 475 YAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLL 554 (987)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~ 554 (987)
T Consensus 258 -------------------------------------------------------------------------------- 257 (534)
T COG4172 258 -------------------------------------------------------------------------------- 257 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHH
Q 001980 555 TSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHEL 634 (987)
Q Consensus 555 ~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~ 634 (987)
T Consensus 258 -------------------------------------------------------------------------------- 257 (534)
T COG4172 258 -------------------------------------------------------------------------------- 257 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 635 RVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGES 714 (987)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 714 (987)
T Consensus 258 -------------------------------------------------------------------------------- 257 (534)
T COG4172 258 -------------------------------------------------------------------------------- 257 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCC--------CccceeeeeEEEeCCcEEEEEcCCCCCh
Q 001980 715 VGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRP--------DVVVFKDFNLRIRAGQSQALVGASGSGK 786 (987)
Q Consensus 715 ~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~--------~~~vL~~vsl~I~~Ge~vaIVG~sGsGK 786 (987)
++.++.-.+ .+.+....--++.+||...|+-++ ...++++|||+.++||++||||+|||||
T Consensus 258 -------l~aeP~g~~----~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGK 326 (534)
T COG4172 258 -------LAAEPSGDP----PPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGK 326 (534)
T ss_pred -------HhcCCCCCC----CCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCc
Confidence 000010000 000011112467777777775322 1248999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCceEEECCccCCCCCHHH---HhcccEEEcccccc-c--cccHHHHhc----cCCCCCC----HHH
Q 001980 787 SSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---LRLKIGLVQQEPAL-F--AASIFDNIA----YGKEGAT----EAE 852 (987)
Q Consensus 787 STL~~lL~rl~~p~~G~I~idG~di~~i~l~~---lR~~i~~VpQdp~l-F--~gTIreNL~----~~~~~~s----d~e 852 (987)
|||-.+|+|+.+++ |+|.++|.||..++.+. +|+++-+|+|||+= + ..||.+=|. .-.|..+ ++.
T Consensus 327 sTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~r 405 (534)
T COG4172 327 STLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQR 405 (534)
T ss_pred chHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHH
Confidence 99999999999876 99999999999998776 68999999999962 2 245555443 2233333 456
Q ss_pred HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--
Q 001980 853 VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-- 930 (987)
Q Consensus 853 i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-- 930 (987)
+.+|++.+|++.-... .-...||||||||||||||++-+|++++||||||+||..-.++|.+.++++.
T Consensus 406 v~~aL~EVGLDp~~r~----------RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k 475 (534)
T COG4172 406 VIEALEEVGLDPATRN----------RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK 475 (534)
T ss_pred HHHHHHHcCCChhHhh----------cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHH
Confidence 7889999998754432 1234699999999999999999999999999999999999999999999875
Q ss_pred CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCCchHHHH
Q 001980 931 RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 931 ~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l 979 (987)
.+-+-++|+|+|..++. ||+|+||.+|+|||+|+-++++++|...|.+-
T Consensus 476 ~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 476 HGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred hCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHHH
Confidence 46799999999999976 89999999999999999999999999999764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-73 Score=668.50 Aligned_cols=450 Identities=21% Similarity=0.356 Sum_probs=346.8
Q ss_pred EEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcceEE
Q 001980 102 FKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL-RWLRDQIGL 180 (987)
Q Consensus 102 ~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~ 180 (987)
++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..++++++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999974 358999999999999999999999999999999999999999999999999876554 345678999
Q ss_pred EcCCCCCchh-cHHHHHhcCCCCC-----CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 181 VNQEPALFAT-TILENILYGKPEA-----TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 181 v~Q~~~l~~~-tv~eni~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
++|++.++.. |++||+.++.... ...+.. ..+.+.++.+ |++........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMY-----RDTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 9999988765 9999998764210 111111 1123445554 6666667778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhhhhHHH
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKAGAYAS 332 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 332 (987)
.+|++|||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++... .
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-----~ 225 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD-----K 225 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH-----H
Confidence 9999999999999999999999999998875 48999999999998865 899999999999987654332000 0
Q ss_pred HHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCchHHHHHH
Q 001980 333 LIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLL 412 (987)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (987)
.
T Consensus 226 ~------------------------------------------------------------------------------- 226 (491)
T PRK10982 226 I------------------------------------------------------------------------------- 226 (491)
T ss_pred H-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 413 KLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGE 492 (987)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (987)
...
T Consensus 227 ----------------------------------~~~------------------------------------------- 229 (491)
T PRK10982 227 ----------------------------------IAM------------------------------------------- 229 (491)
T ss_pred ----------------------------------HHH-------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001980 493 NLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLIL 572 (987)
Q Consensus 493 ~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l 572 (987)
. +...
T Consensus 230 -------------~-------~~~~------------------------------------------------------- 234 (491)
T PRK10982 230 -------------M-------VGRS------------------------------------------------------- 234 (491)
T ss_pred -------------H-------hCCC-------------------------------------------------------
Confidence 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001980 573 GTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILF 652 (987)
Q Consensus 573 ~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 652 (987)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 001980 653 GISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDD 732 (987)
Q Consensus 653 ~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~ 732 (987)
. . . .. +. +..
T Consensus 235 --------------------------~------------------------------------~---~--~~-~~--~~~ 244 (491)
T PRK10982 235 --------------------------L------------------------------------T---Q--RF-PD--KEN 244 (491)
T ss_pred --------------------------c------------------------------------c---c--cc-cc--ccC
Confidence 0 0 0 00 00 000
Q ss_pred CCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC
Q 001980 733 PDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR 812 (987)
Q Consensus 733 ~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~ 812 (987)
+ +.+..|+++|++++| + ++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++.
T Consensus 245 ~------~~~~~i~~~~l~~~~--~---~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 313 (491)
T PRK10982 245 K------PGEVILEVRNLTSLR--Q---PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKIN 313 (491)
T ss_pred C------CCCcEEEEeCccccc--C---cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECC
Confidence 0 001248999999975 2 4899999999999999999999999999999999999999999999999998
Q ss_pred CCCHH-HHhcccEEEccccc---ccc-ccHHHH-----hccCCC--C-CCH----HHHHHHHHHcCchhhHhhCCCcCCC
Q 001980 813 RLNLK-SLRLKIGLVQQEPA---LFA-ASIFDN-----IAYGKE--G-ATE----AEVVEAARAANVHGFVSALPNAYKT 875 (987)
Q Consensus 813 ~i~l~-~lR~~i~~VpQdp~---lF~-gTIreN-----L~~~~~--~-~sd----~ei~~al~~a~l~~~i~~lp~gldt 875 (987)
..+.. .+|+.++|+||++. +|. .|+.+| +..... . .+. +++.+.++..++. .+..+.
T Consensus 314 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~ 387 (491)
T PRK10982 314 NHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVK------TPGHRT 387 (491)
T ss_pred CCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCcc------CCCccc
Confidence 77654 45788999999963 554 466666 432111 1 111 2233333333331 112344
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEE
Q 001980 876 PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGV 953 (987)
Q Consensus 876 ~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iiv 953 (987)
++ ..||||||||++||||++++|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+.. |||+++
T Consensus 388 ~~----~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~ 463 (491)
T PRK10982 388 QI----GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILV 463 (491)
T ss_pred cc----ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEE
Confidence 44 4699999999999999999999999999999999999999999998864 58999999999998865 799999
Q ss_pred EeCCEEEEecChhHH
Q 001980 954 VQDGRIVEQGSHSEL 968 (987)
Q Consensus 954 l~~G~ive~Gt~~eL 968 (987)
|++|+++..++++++
T Consensus 464 l~~g~i~~~~~~~~~ 478 (491)
T PRK10982 464 MSNGLVAGIVDTKTT 478 (491)
T ss_pred EECCEEEEEEccccC
Confidence 999999988877544
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-71 Score=602.89 Aligned_cols=492 Identities=26% Similarity=0.349 Sum_probs=443.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001980 469 YIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQ 548 (987)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~ 548 (987)
.+++.++..++..++.++..+++.+...+++.++|...+++|..-- ..|+=. .--+|.++++.++...-+..+.
T Consensus 69 al~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~-----~~g~~~-Q~LrDL~qvR~Fltg~g~~A~f 142 (580)
T COG4618 69 ALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRR-----GSGDGL-QPLRDLDQVRQFLTGTGLTAFF 142 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhc-----CCCccc-cchhhHHHHHHHHcCCCcchhc
Confidence 3344556677888999999999999999999999999987766422 222211 2247999999999998888888
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHH
Q 001980 549 NMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILS 628 (987)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~ 628 (987)
...++-+.++++|.++++++++.++...+++.+.++..+..++-.++..+.......+...+..+.++|++.|+.....+
T Consensus 143 DaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~ 222 (580)
T COG4618 143 DAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAK 222 (580)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHH
Confidence 88889999999999999999999999988888888888888887788888888888999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 629 LFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEI 708 (987)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (987)
+|.+....+.....+.+-..+.+..++..+-.+....++..|.+|+..|++|.|.+++..........|+...+..|.++
T Consensus 223 rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~ 302 (580)
T COG4618 223 RWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQF 302 (580)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHH
Confidence 99998888888777777777888888889999999999999999999999999999988888888889999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHH
Q 001980 709 IRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSS 788 (987)
Q Consensus 709 ~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKST 788 (987)
..+..+..|+.+.+...+...+ .-+.|..+|.+.++++++.-|+. ++|+|+|+||.++|||-+||+|||||||||
T Consensus 303 ~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKST 377 (580)
T COG4618 303 VAARQSYKRLNELLAELPAAAE----RMPLPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKST 377 (580)
T ss_pred HHHHHHHHHHHHHHHhCccccC----CCCCCCCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHH
Confidence 9999999999999987654332 23344557899999999977655 568999999999999999999999999999
Q ss_pred HHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhh
Q 001980 789 VIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSA 868 (987)
Q Consensus 789 L~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~ 868 (987)
|.++|.|.+.|.+|.|.+||-|+++++.+.+-++|||.|||..||+|||+|||+-+.++.+++.+.+|++.++.||.|.+
T Consensus 378 LaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~ 457 (580)
T COG4618 378 LARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILR 457 (580)
T ss_pred HHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999977788999999999999999999999
Q ss_pred CCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc
Q 001980 869 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG 947 (987)
Q Consensus 869 lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~ 947 (987)
+|+||||.||++|..|||||||||+|||||+.+|++++||||.||||.+-|+.+.++|.+.. +|+|+|+||||++.+..
T Consensus 458 lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~ 537 (580)
T COG4618 458 LPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALAS 537 (580)
T ss_pred CcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999876 79999999999999999
Q ss_pred cCEEEEEeCCEEEEecChhHHhcC
Q 001980 948 VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 948 ~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
+|+|+||++|++..+|+-+|.+++
T Consensus 538 ~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 538 VDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred cceeeeecCChHHhcCCHHHHHHH
Confidence 999999999999999999998865
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-70 Score=700.45 Aligned_cols=220 Identities=26% Similarity=0.408 Sum_probs=188.7
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..|+++|+++.|++. +..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+|++
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 369999999999632 2459999999999999999999999999999999999999999999999999864 45567889
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+|||||++.+++. ||+|||.++... ...++..+ .+.+.++.+ |+.........+||||||||++|||||+
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999999876 999999875221 11111111 123344444 6666677888899999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|+|+||||||++||+.+++.+++.|+++++|+|||++||+++++.. ||||++|++|++++.|+.+++.++
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999998779999999999999976 899999999999999999998764
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-73 Score=646.70 Aligned_cols=335 Identities=49% Similarity=0.766 Sum_probs=317.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 001980 3 KGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPS 82 (987)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~ 82 (987)
.+..++.+.++.++..+.++|||++++..|.+|.|.+.+++++......++..+...++.+.++..|.+|++|+++.+|.
T Consensus 371 ~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~ 450 (716)
T KOG0058|consen 371 YGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPR 450 (716)
T ss_pred hhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCC
Confidence 45567778888889999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC
Q 001980 83 IIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD 162 (987)
Q Consensus 83 ~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~ 162 (987)
.+.+ ....+....+.|+|+||+|+||.+++.++|+|+||+|+|||.||+||||||||||++++|.++|+|++|+|.+|
T Consensus 451 i~~~--G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllD 528 (716)
T KOG0058|consen 451 IPLT--GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLD 528 (716)
T ss_pred CCCC--CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEEC
Confidence 6543 22222356788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChH
Q 001980 163 NVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG 242 (987)
Q Consensus 163 g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgG 242 (987)
|+|++++++.++|++||+|.|||.||++||+|||.||.++.+++++..+++.+++++||..+|+||+|.+||+|..||||
T Consensus 529 G~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGG 608 (716)
T KOG0058|consen 529 GVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGG 608 (716)
T ss_pred CeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHH
Q 001980 243 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEE 322 (987)
Q Consensus 243 qkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 322 (987)
|||||||||||++||.||||||+|||||++++..++++|.+..+++|||+|+||++++++||+|+|+++|+++|.|+|+|
T Consensus 609 QKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~e 688 (716)
T KOG0058|consen 609 QKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDE 688 (716)
T ss_pred HHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhh-hhHHHHHHHHHh
Q 001980 323 LIAKA-GAYASLIRFQEM 339 (987)
Q Consensus 323 l~~~~-~~~~~~~~~~~~ 339 (987)
|+++. +.|.++.+.|..
T Consensus 689 Ll~~~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 689 LLSKPNGLYAKLVQRQLD 706 (716)
T ss_pred HhhCcccHHHHHHHHhcc
Confidence 99988 799999876643
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-72 Score=662.91 Aligned_cols=452 Identities=23% Similarity=0.293 Sum_probs=345.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++. .+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSDT---KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCCe---eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 38999999999743 489999999999999999999999999999999999999999999999888766666667789
Q ss_pred EEEcCCCCC--c-------hhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 179 GLVNQEPAL--F-------ATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 179 ~~v~Q~~~l--~-------~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
+|++|++.+ + ..|++||+.++. ...+++.+ .++.+ |+.........+||||||||++|
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQ---------LAQQF--GITALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccch--hHHHHHHH---------HHHHc--CCHhhhhCCcccCCHHHHHHHHH
Confidence 999998753 1 348888886531 11122222 33333 55445566778999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
||||+.+|++|||||||++||+.+++.+.+.|.++. +|+|+|++||+++.+.. ||+|++|++|+++..|+.+++....
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 226 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQA 226 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcch
Confidence 999999999999999999999999999999999885 47899999999998876 8999999999999988766653210
Q ss_pred hhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCchH
Q 001980 328 GAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGY 407 (987)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (987)
. ...+.. . .
T Consensus 227 ~-~~~~~~-----------------~------~----------------------------------------------- 235 (490)
T PRK10938 227 L-VAQLAH-----------------S------E----------------------------------------------- 235 (490)
T ss_pred h-hhhhhh-----------------h------h-----------------------------------------------
Confidence 0 000000 0 0
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF 487 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (987)
T Consensus 236 -------------------------------------------------------------------------------- 235 (490)
T PRK10938 236 -------------------------------------------------------------------------------- 235 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001980 488 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV 567 (987)
Q Consensus 488 ~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 567 (987)
.+ ... +.+.
T Consensus 236 ----------------------~~--~~~-~~~~---------------------------------------------- 244 (490)
T PRK10938 236 ----------------------QL--EGV-QLPE---------------------------------------------- 244 (490)
T ss_pred ----------------------cc--Ccc-ccCc----------------------------------------------
Confidence 00 000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001980 568 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 647 (987)
Q Consensus 568 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (987)
T Consensus 245 -------------------------------------------------------------------------------- 244 (490)
T PRK10938 245 -------------------------------------------------------------------------------- 244 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001980 648 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTR 727 (987)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~ 727 (987)
... +.
T Consensus 245 --------------------------------------------------------------------------~~~-~~ 249 (490)
T PRK10938 245 --------------------------------------------------------------------------PDE-PS 249 (490)
T ss_pred --------------------------------------------------------------------------ccc-cc
Confidence 000 00
Q ss_pred CCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-CCceEEE
Q 001980 728 IDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-TAGKVMI 806 (987)
Q Consensus 728 ~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-~~G~I~i 806 (987)
. +.... .....|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+
T Consensus 250 ~-~~~~~-----~~~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~ 320 (490)
T PRK10938 250 A-RHALP-----ANEPRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTL 320 (490)
T ss_pred c-ccccC-----CCCceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEE
Confidence 0 00000 01124999999999953 3589999999999999999999999999999999998875 6999999
Q ss_pred CCccCCC-CCHHHHhcccEEEcccccccc---ccHHHHhccCCC-------CCC---HHHHHHHHHHcCchh-hHhhCCC
Q 001980 807 DGKDIRR-LNLKSLRLKIGLVQQEPALFA---ASIFDNIAYGKE-------GAT---EAEVVEAARAANVHG-FVSALPN 871 (987)
Q Consensus 807 dG~di~~-i~l~~lR~~i~~VpQdp~lF~---gTIreNL~~~~~-------~~s---d~ei~~al~~a~l~~-~i~~lp~ 871 (987)
+|.++.. .+...+|++++|+||++.++. .|+++++..+.. ... ++++.++++..++.+ .
T Consensus 321 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------ 394 (490)
T PRK10938 321 FGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRT------ 394 (490)
T ss_pred ecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhh------
Confidence 9987642 234457889999999987642 467777643211 111 234566666666643 2
Q ss_pred cCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-C-CeEEEEecCchhhhc--
Q 001980 872 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-G-RTTVLVAHRLSTIRG-- 947 (987)
Q Consensus 872 gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~-~-~TvI~IaHRl~ti~~-- 947 (987)
.+.++ ..||||||||++|||||+++|++|||||||++||+.+...+.+.|++..+ + .|||+|||+++.+..
T Consensus 395 -~~~~~----~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~ 469 (490)
T PRK10938 395 -ADAPF----HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACI 469 (490)
T ss_pred -ccCch----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhh
Confidence 22333 46999999999999999999999999999999999999999999998753 4 479999999999975
Q ss_pred cCEEEEEeCCEEEEec
Q 001980 948 VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 948 ~D~Iivl~~G~ive~G 963 (987)
||++++|++|+|++.-
T Consensus 470 ~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 470 THRLEFVPDGDIYRYV 485 (490)
T ss_pred heeEEEecCCceEEee
Confidence 6999999999998763
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-70 Score=706.85 Aligned_cols=213 Identities=24% Similarity=0.429 Sum_probs=182.5
Q ss_pred cEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC---CCCceEEECCccCCCCCHHHH
Q 001980 744 EIELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD---PTAGKVMIDGKDIRRLNLKSL 819 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~l~~l 819 (987)
.++++||+++|+.++ ++++|+|||++|+|||++||+||||||||||+++|.|+.+ |++|+|++||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 479999999996322 3469999999999999999999999999999999999997 78899999999985 257
Q ss_pred hcccEEEccccc-cccccHHHHhccCC----C-CCCHHH----HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 820 RLKIGLVQQEPA-LFAASIFDNIAYGK----E-GATEAE----VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 820 R~~i~~VpQdp~-lF~gTIreNL~~~~----~-~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
|++++||||++. ++..||||||.++. + +.++++ +.++++..++. +..|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-------SYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhCCCeeCCCCCCCCHHHh
Confidence 899999999875 55689999998642 1 234433 45666666654 3468899988889999999
Q ss_pred HHHHHHHHHccCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhh--hccCEEEEEeCC-EEEEecC
Q 001980 890 QRIAIARAVLKNPA-ILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTI--RGVDCIGVVQDG-RIVEQGS 964 (987)
Q Consensus 890 QrlaLARAllr~p~-ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti--~~~D~Iivl~~G-~ive~Gt 964 (987)
||++|||||+++|+ ||+||||||+||+.+...|++.|++.. +|+|||+++|+++.. ..+|+|++|++| +++++|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999999874 689999999999974 578999999997 9999998
Q ss_pred hhH
Q 001980 965 HSE 967 (987)
Q Consensus 965 ~~e 967 (987)
+.+
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 743
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-70 Score=653.95 Aligned_cols=480 Identities=24% Similarity=0.389 Sum_probs=345.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. .+|+
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999974 35899999999999999999999999999999999999999999999872 3699
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCCC----------------CHH---HHHHH----------HHHHhHHHHHHhCCCCCc
Q 001980 180 LVNQEPALFAT-TILENILYGKPEA----------------TMA---EVEAA----------ASAANAHSFITLLPNGYS 229 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~~----------------~~~---~~~~~----------~~~~~~~~~~~~~~~g~~ 229 (987)
|++|++.+++. |++||+.++.... ... .+.+. .....+.+.++.+ |+.
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 99999988765 9999998753100 000 00000 0011223445555 554
Q ss_pred ccc-cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEE
Q 001980 230 TQV-GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVA 307 (987)
Q Consensus 230 t~~-~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~ 307 (987)
... .....+||||||||++|||||+.+|++|||||||++||+.+++++.+.|.+ .+.|||+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 332 345789999999999999999999999999999999999999999999975 47899999999999876 89999
Q ss_pred EEeCCEE-EEecChHHHHHhhhh-HHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCC
Q 001980 308 VIQQGQV-VETGTHEELIAKAGA-YASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGA 385 (987)
Q Consensus 308 ~l~~G~i-~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (987)
+|++|++ ++.|+++++++.... +.......... ..
T Consensus 224 ~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~------------------~~------------------------- 260 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMTAATQARERLLADNAKK------------------KA------------------------- 260 (530)
T ss_pred EEeCCEEEEecCCHHHHHHHHHHHHHHHHHHHHHH------------------HH-------------------------
Confidence 9999999 478988887542110 00000000000 00
Q ss_pred CcccccccccccccCCCCCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHH
Q 001980 386 DGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEF 465 (987)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
. ...
T Consensus 261 --------~-------------~~~------------------------------------------------------- 264 (530)
T PRK15064 261 --------Q-------------IAE------------------------------------------------------- 264 (530)
T ss_pred --------H-------------HHH-------------------------------------------------------
Confidence 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHH
Q 001980 466 VFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISV 545 (987)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~ 545 (987)
++. ... + .. ...
T Consensus 265 --------------------------------~~~-~~~---~-----~~---~~~------------------------ 276 (530)
T PRK15064 265 --------------------------------LQS-FVS---R-----FS---ANA------------------------ 276 (530)
T ss_pred --------------------------------HHH-HHH---H-----hh---ccc------------------------
Confidence 000 000 0 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHH
Q 001980 546 ILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNK 625 (987)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~ 625 (987)
...
T Consensus 277 ------------------------------------------------~~~----------------------------- 279 (530)
T PRK15064 277 ------------------------------------------------SKA----------------------------- 279 (530)
T ss_pred ------------------------------------------------hhh-----------------------------
Confidence 000
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 626 ILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLA 705 (987)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (987)
.....
T Consensus 280 ---------~~~~~------------------------------------------------------------------ 284 (530)
T PRK15064 280 ---------KQATS------------------------------------------------------------------ 284 (530)
T ss_pred ---------HHHHH------------------------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHH-h-cccCCCCCCCC-C-CCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcC
Q 001980 706 PEIIRGGESVGSVFST-L-DRSTRIDPDDP-D-AEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGA 781 (987)
Q Consensus 706 ~~~~~~~~s~~ri~~~-~-~~~~~~~~~~~-~-~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~ 781 (987)
...++.+. . ........... . .......+..|+++|++++|++ .++|+|+||+|++||++||+|+
T Consensus 285 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~ 353 (530)
T PRK15064 285 --------RAKQIDKIKLEEVKPSSRQNPFIRFEQDKKLHRNALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGE 353 (530)
T ss_pred --------HHHHHhhccccccCCccccCceeeCCCCCCCCCceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECC
Confidence 00000000 0 00000000000 0 0000011236999999999953 3599999999999999999999
Q ss_pred CCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccc--cc-cccHHHHhccCC-CCCCHHHHHHHH
Q 001980 782 SGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPA--LF-AASIFDNIAYGK-EGATEAEVVEAA 857 (987)
Q Consensus 782 sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~--lF-~gTIreNL~~~~-~~~sd~ei~~al 857 (987)
||||||||+++|.|+++|++|+|.++| +++++|+||++. ++ ..|+++|+.... ....++++.+++
T Consensus 354 NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l 422 (530)
T PRK15064 354 NGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTL 422 (530)
T ss_pred CCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHH
Confidence 999999999999999999999999998 367999999984 44 369999986432 223455677788
Q ss_pred HHcCch-hhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEE
Q 001980 858 RAANVH-GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTV 936 (987)
Q Consensus 858 ~~a~l~-~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI 936 (987)
+..++. +.. +.++ ..||||||||++||||++++|+||||||||++||+.+...+.+.|++. +.|||
T Consensus 423 ~~~~l~~~~~-------~~~~----~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi 489 (530)
T PRK15064 423 GRLLFSQDDI-------KKSV----KVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLI 489 (530)
T ss_pred HHcCCChhHh-------cCcc----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEE
Confidence 887763 222 2333 469999999999999999999999999999999999999999999886 46999
Q ss_pred EEecCchhhhc-cCEEEEEeCCEEE-EecChhHHhcC
Q 001980 937 LVAHRLSTIRG-VDCIGVVQDGRIV-EQGSHSELVSR 971 (987)
Q Consensus 937 ~IaHRl~ti~~-~D~Iivl~~G~iv-e~Gt~~eLl~~ 971 (987)
+|||+++.+.. ||+|++|++|+++ ..|+++++++.
T Consensus 490 ~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 490 FVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred EEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 99999999876 8999999999998 78999988765
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-69 Score=642.34 Aligned_cols=482 Identities=22% Similarity=0.331 Sum_probs=339.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 5899999999972 23589999999999999999999999999999999999999999999975 2469
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCC----------------CH----------HHHHHHHH-------HHhHHHHHHhC
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEA----------------TM----------AEVEAAAS-------AANAHSFITLL 224 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~----------------~~----------~~~~~~~~-------~~~~~~~~~~~ 224 (987)
+||+|+|.+++. |++||+.++.... .. .++.+.+. ...+.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999876 9999998752100 00 00001110 11122334444
Q ss_pred CCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-C
Q 001980 225 PNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-V 303 (987)
Q Consensus 225 ~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~ 303 (987)
|+. .......+||||||||++|||||+.+|++|||||||++||+.+..++.+.|+++. .|+|+|||+++++.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhc
Confidence 443 2466778999999999999999999999999999999999999999999998873 599999999999876 7
Q ss_pred CEEEEEeCCEEE-EecChHHHHHhhhhHHHHHHHHHhhhccccCCCCccccccccccccccccccccccccccccccccc
Q 001980 304 DTVAVIQQGQVV-ETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYS 382 (987)
Q Consensus 304 d~i~~l~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (987)
|+|++|++|+++ ..|+++++.+....... ..... .
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~~~~~~~~---~~~~~-------------------~---------------------- 263 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLEQKAKRLA---QEEKQ-------------------E---------------------- 263 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHHHHHHHHH---HHHHH-------------------H----------------------
Confidence 999999999986 78888876543110000 00000 0
Q ss_pred CCCCcccccccccccccCCCCCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhh
Q 001980 383 TGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKT 462 (987)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (987)
.. ...
T Consensus 264 ----------~~-------------~~~---------------------------------------------------- 268 (556)
T PRK11819 264 ----------AA-------------RQK---------------------------------------------------- 268 (556)
T ss_pred ----------HH-------------HHH----------------------------------------------------
Confidence 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHH
Q 001980 463 KEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADR 542 (987)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~ 542 (987)
.++ ++.. |.+. .+.+
T Consensus 269 ----------------------------------~~~-~~~~--------~~~~--~~~~-------------------- 283 (556)
T PRK11819 269 ----------------------------------ALK-RELE--------WVRQ--SPKA-------------------- 283 (556)
T ss_pred ----------------------------------HHH-HHHH--------HHHH--hhhh--------------------
Confidence 000 0000 0000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhcc
Q 001980 543 ISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNA 622 (987)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~ 622 (987)
+. . ..
T Consensus 284 -----------------------------------------------~~-~-~~-------------------------- 288 (556)
T PRK11819 284 -----------------------------------------------RQ-A-KS-------------------------- 288 (556)
T ss_pred -----------------------------------------------hH-H-HH--------------------------
Confidence 00 0 00
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 001980 623 QNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETV 702 (987)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (987)
+ ...
T Consensus 289 ~-~~~--------------------------------------------------------------------------- 292 (556)
T PRK11819 289 K-ARL--------------------------------------------------------------------------- 292 (556)
T ss_pred H-HHH---------------------------------------------------------------------------
Confidence 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCC-CCCC-CCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEc
Q 001980 703 SLAPEIIRGGESVGSVFSTLDRSTRIDP-DDPD-AEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVG 780 (987)
Q Consensus 703 ~~~~~~~~~~~s~~ri~~~~~~~~~~~~-~~~~-~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG 780 (987)
...++..+. .+...+. .... .......+..|+++||+++|++ .++|+|+||+|++||++||+|
T Consensus 293 ----------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G 357 (556)
T PRK11819 293 ----------ARYEELLSE--EYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIG 357 (556)
T ss_pred ----------HHHHHhhcc--cccccCCCceeecCCCCCCCCeEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEEC
Confidence 000000000 0000000 0000 0000011235999999999953 359999999999999999999
Q ss_pred CCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEcccc-cccc-ccHHHHhccCCCC----CCHHHHH
Q 001980 781 ASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEP-ALFA-ASIFDNIAYGKEG----ATEAEVV 854 (987)
Q Consensus 781 ~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp-~lF~-gTIreNL~~~~~~----~sd~ei~ 854 (987)
+||||||||+++|.|+++|++|+|.+++ + .+|+|+||++ .++. -|+++|+.++... ..+.+..
T Consensus 358 ~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 426 (556)
T PRK11819 358 PNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSR 426 (556)
T ss_pred CCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHH
Confidence 9999999999999999999999999964 2 1699999997 5554 5999999765321 1233444
Q ss_pred HHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCe
Q 001980 855 EAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRT 934 (987)
Q Consensus 855 ~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~T 934 (987)
++++..++.+. ..+.++ ..||||||||++||||++.+|++|||||||++||+.+...+.+.|++. + .|
T Consensus 427 ~~l~~~~l~~~------~~~~~~----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~t 494 (556)
T PRK11819 427 AYVGRFNFKGG------DQQKKV----GVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GC 494 (556)
T ss_pred HHHHhCCCChh------HhcCch----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-Ce
Confidence 55665555321 123333 469999999999999999999999999999999999999999999986 3 49
Q ss_pred EEEEecCchhhhc-cCEEEEEeC-CEEEE-ecChhHHhcC
Q 001980 935 TVLVAHRLSTIRG-VDCIGVVQD-GRIVE-QGSHSELVSR 971 (987)
Q Consensus 935 vI~IaHRl~ti~~-~D~Iivl~~-G~ive-~Gt~~eLl~~ 971 (987)
||+|||+++.+.. ||+|++|++ |++.+ .|+++++++.
T Consensus 495 vi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 495 AVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred EEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999998865 899999986 88874 6888877654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-67 Score=684.29 Aligned_cols=471 Identities=21% Similarity=0.286 Sum_probs=381.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001980 488 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV 567 (987)
Q Consensus 488 ~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 567 (987)
.+.+.+....++..+|+++++.|..+|+. ..+|+++|++++|++.++..+ ..+..++...+.+++++++++ +.+
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~--~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~---~~l 439 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKN--FASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLY---QQL 439 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCC--CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 56777888888889999999999998874 689999999999999999986 455555544444444433322 223
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHH
Q 001980 568 SLLILGTYPLLV---LANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRR 644 (987)
Q Consensus 568 ~l~~l~~~pl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~ 644 (987)
++..++.+++++ .+..+..+..++..++..+...+....+.|.++|+++||+|++|+.+.+++.+..+...+...+.
T Consensus 440 g~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~ 519 (1495)
T PLN03232 440 GVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKA 519 (1495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322222211 12333445555556666677778889999999999999999999999999988776666555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001980 645 SLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDR 724 (987)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~ 724 (987)
.....+...+.... ...+..+++|.+++..+.++++.+++++.+......++..+......+.++..+.+|+.++++.
T Consensus 520 ~~~~~~~~~~~~~~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~ 597 (1495)
T PLN03232 520 QLLSAFNSFILNSI--PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLS 597 (1495)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44443332222111 1223346788888889999999999998888888889988888889999999999999999976
Q ss_pred cCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceE
Q 001980 725 STRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804 (987)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I 804 (987)
+++.....+ +..+..+.|+|+|++|+|+++++.++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+
T Consensus 598 ~~~~~~~~~---~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i 674 (1495)
T PLN03232 598 EERILAQNP---PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674 (1495)
T ss_pred ccccccccC---CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCE
Confidence 543211111 11122357999999999976444679999999999999999999999999999999999999999876
Q ss_pred EECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCC
Q 001980 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQL 884 (987)
Q Consensus 805 ~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 884 (987)
. .+|++|+||||+|.+|+|||||||.+|.+ +++++++++++.|++.++++.+|+|++|+|||+|.+|
T Consensus 675 ~------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~L 741 (1495)
T PLN03232 675 V------------VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNI 741 (1495)
T ss_pred E------------EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCccc
Confidence 3 46889999999999999999999999875 7999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEec
Q 001980 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEA-LERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQG 963 (987)
Q Consensus 885 SgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~-l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~G 963 (987)
|||||||||||||++++|+|+||||||||||+++++.|.+. ++...+++|+|+||||++++..||+|++|++|+|+|.|
T Consensus 742 SGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~G 821 (1495)
T PLN03232 742 SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEG 821 (1495)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999988654 66666899999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHhh
Q 001980 964 SHSELVSRPDGAYSRLLQLQ 983 (987)
Q Consensus 964 t~~eLl~~~~g~f~~l~~~q 983 (987)
+|++|+++ ++.|+++++.+
T Consensus 822 t~~eL~~~-~~~~~~l~~~~ 840 (1495)
T PLN03232 822 TFAELSKS-GSLFKKLMENA 840 (1495)
T ss_pred CHHHHHhc-chhHHHHHHhc
Confidence 99999986 78999998755
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-67 Score=626.55 Aligned_cols=473 Identities=18% Similarity=0.232 Sum_probs=376.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 476 AVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLT 555 (987)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~ 555 (987)
..++.++..++..+.+.+...++|.++++++++.|++||+. +++|++++|+++|++.+...+. .++.++..++.+++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~--~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~ 137 (547)
T PRK10522 61 LMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQ--LGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLG 137 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhc--cCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34566778888899999999999999999999999999985 7899999999999999998765 57778888888888
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccH---HHHHHHHHH
Q 001980 556 SFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ---NKILSLFCH 632 (987)
Q Consensus 556 ~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~---~~~~~~~~~ 632 (987)
+++++++++|.+++++++++|+.+++.+...++.++..++.++..++....+.|.++|+++++ ++.+ +.+.+++.+
T Consensus 138 ~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~ 216 (547)
T PRK10522 138 SAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEP 216 (547)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhH
Confidence 999999999999999999998888777766666666677777788899999999999999995 4443 456777877
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 633 ELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGG 712 (987)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (987)
..+...+...+..........+.........++.++++..+ +..+.+.+..+..+......++..+......+....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 293 (547)
T PRK10522 217 DAQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQ 293 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766655555444333332222222222222223333221 112333333333333345578888999999999999
Q ss_pred HHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHH
Q 001980 713 ESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIAL 792 (987)
Q Consensus 713 ~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~l 792 (987)
.+.+|+.++.+.+.+.+.. ...+ .+..+.|+|+||+|+|+++ .++|+|+||+|+|||++||||+||||||||+++
T Consensus 294 ~a~~ri~~l~~~~~~~~~~--~~~~-~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~l 368 (547)
T PRK10522 294 VAFNKLNKLALAPYKAEFP--RPQA-FPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAML 368 (547)
T ss_pred HHHHHHHHHhccccccccc--cccc-cCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 9999999986543221111 1111 1123579999999999743 369999999999999999999999999999999
Q ss_pred HhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCc
Q 001980 793 IERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNA 872 (987)
Q Consensus 793 L~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~g 872 (987)
|+|+|+|++|+|++||+|+++++.+++|++++||||||++|++|+++| + ++.++++++++++.+++.+++. .++|
T Consensus 369 l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~-~~~~ 443 (547)
T PRK10522 369 LTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLE-LEDG 443 (547)
T ss_pred HhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhh-cccc
Confidence 999999999999999999999999999999999999999999999999 2 4578889999999998887665 3444
Q ss_pred CCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCE
Q 001980 873 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDC 950 (987)
Q Consensus 873 ldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~~D~ 950 (987)
. .+|.+||||||||++||||++++|+|||||||||+||+++++.+.+.+.+.. +++|+|+||||++++..||+
T Consensus 444 ~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~ 518 (547)
T PRK10522 444 R-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADR 518 (547)
T ss_pred C-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCE
Confidence 2 2478999999999999999999999999999999999999999999998654 48999999999999999999
Q ss_pred EEEEeCCEEEEe-cChhHHhc
Q 001980 951 IGVVQDGRIVEQ-GSHSELVS 970 (987)
Q Consensus 951 Iivl~~G~ive~-Gt~~eLl~ 970 (987)
|++|++|+++|. |++.+-..
T Consensus 519 i~~l~~G~i~e~~~~~~~~~~ 539 (547)
T PRK10522 519 LLEMRNGQLSELTGEERDAAS 539 (547)
T ss_pred EEEEECCEEEEecCCchhhhh
Confidence 999999999987 55555443
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-67 Score=680.51 Aligned_cols=538 Identities=20% Similarity=0.240 Sum_probs=402.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 420 PYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVR 499 (987)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 499 (987)
+.+++++++.++..++....++++..+++.+...+.. .....++.++++..++..++..-..+.....+.++...++
T Consensus 301 ~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~ 377 (1622)
T PLN03130 301 GRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPA---WIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLV 377 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555556666666777666544322110 0001111111111111111111111123467777888888
Q ss_pred HHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001980 500 RMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLV 579 (987)
Q Consensus 500 ~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~ 579 (987)
..+|+++++.|..++.. ...|+++|++++|++.++..+ ..+..++...+.+++++++++..-...+++.++++.+++
T Consensus 378 ~~i~~k~L~l~~~~~~~--~~~G~ivnl~s~Dv~~i~~~~-~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~ 454 (1622)
T PLN03130 378 AAVFRKSLRLTHEGRKK--FTSGKITNLMTTDAEALQQIC-QQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMF 454 (1622)
T ss_pred HHHHHHHhcCChhhcCC--CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999864 789999999999999999987 445555555555555544443321111222222222222
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 580 LANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFAL 659 (987)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (987)
.+..+..+++++..++......+....+.|.++|+++||.|++|+.+.+++.+..+...+...+......+...+.....
T Consensus 455 ~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~ 534 (1622)
T PLN03130 455 PIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIP 534 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233344455555566666677788999999999999999999999999887766654444333333333222222211
Q ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCC
Q 001980 660 HASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVE 739 (987)
Q Consensus 660 ~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~ 739 (987)
..+.+.++|.+++..|.++++.+++++.+......|+..+......+.++..+++|+.++++.++......+ +..
T Consensus 535 --~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~---~~~ 609 (1622)
T PLN03130 535 --VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNP---PLE 609 (1622)
T ss_pred --HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCC---ccc
Confidence 134556788888889999999999888888888888888888889999999999999999875432211111 111
Q ss_pred CccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC-ceEEECCccCCCCCHHH
Q 001980 740 TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA-GKVMIDGKDIRRLNLKS 818 (987)
Q Consensus 740 ~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~-G~I~idG~di~~i~l~~ 818 (987)
+..+.|+|+||+|+|+++++.++|+|+||+|++||+++|||+||||||||+++|+|+++|++ |+|.+
T Consensus 610 ~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l------------ 677 (1622)
T PLN03130 610 PGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI------------ 677 (1622)
T ss_pred CCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE------------
Confidence 12357999999999975444579999999999999999999999999999999999999999 99974
Q ss_pred HhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHH
Q 001980 819 LRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 898 (987)
Q Consensus 819 lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAl 898 (987)
|.+|+||||+|.+|+|||||||.+|.+ +++++++++++.|+++++++.+|+|++|.|||+|.+||||||||||||||+
T Consensus 678 -~~~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAl 755 (1622)
T PLN03130 678 -RGTVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAV 755 (1622)
T ss_pred -cCeEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999999876 689999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001980 899 LKNPAILLLDEATSALDAESECVLQ-EALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYS 977 (987)
Q Consensus 899 lr~p~ILlLDEaTS~LD~~te~~I~-~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~ 977 (987)
+++|+|+||||||||||+++++.|. +.++...+++|+|+||||++.+..+|+|++|++|+|+|.|+|++|+++ ++.|+
T Consensus 756 y~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~-~~~~~ 834 (1622)
T PLN03130 756 YSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN-GPLFQ 834 (1622)
T ss_pred hCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc-chhHH
Confidence 9999999999999999999998875 567767789999999999999999999999999999999999999976 78899
Q ss_pred HHHHhh
Q 001980 978 RLLQLQ 983 (987)
Q Consensus 978 ~l~~~q 983 (987)
++++.+
T Consensus 835 ~l~~~~ 840 (1622)
T PLN03130 835 KLMENA 840 (1622)
T ss_pred HHHHhc
Confidence 988654
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-68 Score=635.85 Aligned_cols=482 Identities=24% Similarity=0.340 Sum_probs=337.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|++ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999972 23589999999999999999999999999999999999999999999975 2479
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCC-----------------C-C--------HHHHHHHHHHHh-------HHHHHHhC
Q 001980 179 GLVNQEPALFAT-TILENILYGKPE-----------------A-T--------MAEVEAAASAAN-------AHSFITLL 224 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~-----------------~-~--------~~~~~~~~~~~~-------~~~~~~~~ 224 (987)
+||+|+|++++. |++||+.++... . . ..++.+.++.++ +.+.+..+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 999999999865 999999875310 0 0 011222222221 22233333
Q ss_pred CCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-C
Q 001980 225 PNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-V 303 (987)
Q Consensus 225 ~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~ 303 (987)
|+. .......+||||||||++|||||+.+|++|||||||++||+.+.+++.+.|.++ +.|+|+|||+++.+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 443 245677899999999999999999999999999999999999999999999876 3599999999999876 7
Q ss_pred CEEEEEeCCEEE-EecChHHHHHhhhhHHHHHHHHHhhhccccCCCCccccccccccccccccccccccccccccccccc
Q 001980 304 DTVAVIQQGQVV-ETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYS 382 (987)
Q Consensus 304 d~i~~l~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (987)
|+|++|++|+++ ..|+++++.+....- . ..+... .
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~~~~~~--~-~~~~~~-------------------~---------------------- 261 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLEQKEKR--L-EQEEKE-------------------E---------------------- 261 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHHHHHHH--H-HHHHHH-------------------H----------------------
Confidence 999999999975 778888765421100 0 000000 0
Q ss_pred CCCCcccccccccccccCCCCCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhh
Q 001980 383 TGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKT 462 (987)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (987)
..
T Consensus 262 --------------------------~~---------------------------------------------------- 263 (552)
T TIGR03719 262 --------------------------SA---------------------------------------------------- 263 (552)
T ss_pred --------------------------HH----------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHH
Q 001980 463 KEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADR 542 (987)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~ 542 (987)
....+ .+..
T Consensus 264 -----------------------------------~~~~~-----------------------~~~~------------- 272 (552)
T TIGR03719 264 -----------------------------------RQKAL-----------------------KREL------------- 272 (552)
T ss_pred -----------------------------------HHHHH-----------------------HHHH-------------
Confidence 00000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhcc
Q 001980 543 ISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNA 622 (987)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~ 622 (987)
.| .... .. .++. . .
T Consensus 273 ---------------------~~------------------~~~~--~~-~~~~-~--------------------~--- 286 (552)
T TIGR03719 273 ---------------------EW------------------VRSS--PK-ARQA-K--------------------S--- 286 (552)
T ss_pred ---------------------HH------------------HHhh--hh-hHHH-H--------------------H---
Confidence 00 0000 00 0000 0 0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 001980 623 QNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETV 702 (987)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (987)
+ ....+
T Consensus 287 ~-~~~~~------------------------------------------------------------------------- 292 (552)
T TIGR03719 287 K-ARLAR------------------------------------------------------------------------- 292 (552)
T ss_pred H-HHHHH-------------------------------------------------------------------------
Confidence 0 00000
Q ss_pred HHHHHHHHHHHHHHHHHH-HhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcC
Q 001980 703 SLAPEIIRGGESVGSVFS-TLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGA 781 (987)
Q Consensus 703 ~~~~~~~~~~~s~~ri~~-~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~ 781 (987)
.++..+ .....++......+ ......+..|+++|++++|++ .++|+|+||+|++||++||+|+
T Consensus 293 ------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~ 356 (552)
T TIGR03719 293 ------------YEELLSQEFQKRNETAEIYIP-PGPRLGDKVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGP 356 (552)
T ss_pred ------------HHhhhhhcccccCCCceeecC-CCCCCCCeEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECC
Confidence 000000 00000000000000 000011225999999999953 3599999999999999999999
Q ss_pred CCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccc-ccc-ccHHHHhccCCCC--C--CHHHHHH
Q 001980 782 SGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPA-LFA-ASIFDNIAYGKEG--A--TEAEVVE 855 (987)
Q Consensus 782 sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~-lF~-gTIreNL~~~~~~--~--sd~ei~~ 855 (987)
||||||||+++|.|+.+|++|+|.+++ + .+|+|+||++. ++. .|+++|+.++... . .+.+..+
T Consensus 357 NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 425 (552)
T TIGR03719 357 NGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRA 425 (552)
T ss_pred CCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHH
Confidence 999999999999999999999999964 2 16999999973 554 5999999865321 1 1233444
Q ss_pred HHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeE
Q 001980 856 AARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTT 935 (987)
Q Consensus 856 al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~Tv 935 (987)
+++..++.+. -.+.++ ..||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. . .||
T Consensus 426 ~l~~~~l~~~------~~~~~~----~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~v 493 (552)
T TIGR03719 426 YVGRFNFKGS------DQQKKV----GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCA 493 (552)
T ss_pred HHHhCCCChh------HhcCch----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeE
Confidence 5555554321 123333 469999999999999999999999999999999999999999999987 3 499
Q ss_pred EEEecCchhhhc-cCEEEEEeC-CEEEE-ecChhHHhc
Q 001980 936 VLVAHRLSTIRG-VDCIGVVQD-GRIVE-QGSHSELVS 970 (987)
Q Consensus 936 I~IaHRl~ti~~-~D~Iivl~~-G~ive-~Gt~~eLl~ 970 (987)
|+|||+++.+.. ||+|++|++ |++++ .|+++++++
T Consensus 494 iivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 494 VVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 999999999876 899999997 68874 477776653
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-67 Score=631.18 Aligned_cols=200 Identities=26% Similarity=0.405 Sum_probs=167.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|.|+++|++|+|.+++. .++
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5999999999953 35999999999999999999999999999999999999999999999741 369
Q ss_pred EEEcccc--ccc-cccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 001980 824 GLVQQEP--ALF-AASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900 (987)
Q Consensus 824 ~~VpQdp--~lF-~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr 900 (987)
+|+||++ .++ ..|+.+|+....+...++++.+.++..++.+- -.+.++ ..||||||||++||||+++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~------~~~~~~----~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGD------KVTEET----RRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChh------HhcCch----hhCCHHHHHHHHHHHHHhc
Confidence 9999985 233 34788887422233345566777777766321 123334 4699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEE-EecChhHHh
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIV-EQGSHSELV 969 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~iv-e~Gt~~eLl 969 (987)
+|++|||||||++||+.+...+.+.|++. . .|||+|||+++.+.. ||+|++|++|+++ ..|++++..
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999999999999999999999986 3 599999999999865 8999999999998 678888874
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-67 Score=626.41 Aligned_cols=331 Identities=42% Similarity=0.638 Sum_probs=308.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001980 5 LGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSII 84 (987)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 84 (987)
....+..++..++.++++|+|+++|.+|.+|.|.++++.+.......|+..+...+..+++++.+.+|+.++++.++|.+
T Consensus 378 ~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~ 457 (709)
T COG2274 378 ILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQE 457 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 34556778888999999999999999999999999998888888889999999999999999999999999999887643
Q ss_pred CCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE
Q 001980 85 QDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV 164 (987)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~ 164 (987)
.+.. ....+...+.|+++||+|+|+.++ +++|+|+||+|++||++||||+||||||||+|+|+|+|+|++|+|++||.
T Consensus 458 ~~~~-~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~ 535 (709)
T COG2274 458 GDKT-LIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV 535 (709)
T ss_pred cccc-cccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 2221 123445678899999999998653 46999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 165 DIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 165 ~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
|+.++++..+|++||||+||+.||+|||+|||.++.|+.+++++.++|+.+++++++..+|.||+|.+||+|.+||||||
T Consensus 536 dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQr 615 (709)
T COG2274 536 DLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQR 615 (709)
T ss_pred eHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
||++|||||+++|+||||||||||||+++++.+.+.|.++..|+|+|+||||++.+++||||+||++|+|+++|+|+|++
T Consensus 616 QrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell 695 (709)
T COG2274 616 QRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELL 695 (709)
T ss_pred HHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHHH
Q 001980 325 AKAGAYASLIRFQ 337 (987)
Q Consensus 325 ~~~~~~~~~~~~~ 337 (987)
+.+|.|++++..|
T Consensus 696 ~~~g~y~~l~~~q 708 (709)
T COG2274 696 AQGGLYARLYQQQ 708 (709)
T ss_pred HhcChHHHHHhcc
Confidence 9999999887543
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-65 Score=651.44 Aligned_cols=213 Identities=22% Similarity=0.391 Sum_probs=177.7
Q ss_pred cEEEEeEEEECCCC----------CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC--CCceEEECCccC
Q 001980 744 EIELRHVDFAYPSR----------PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP--TAGKVMIDGKDI 811 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~----------~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p--~~G~I~idG~di 811 (987)
.+.|+||++.++.. ....+|+|||++|+|||.+||+||||||||||+++|.|..++ .+|+|.+||.++
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 69999999997521 123699999999999999999999999999999999999763 689999999886
Q ss_pred CCCCHHHHhcccEEEcccccccc-ccHHHHhccCC----C-CCCHHH----HHHHHHHcCchhhHhhCCCcCCCccCCCC
Q 001980 812 RRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGK----E-GATEAE----VVEAARAANVHGFVSALPNAYKTPVGERG 881 (987)
Q Consensus 812 ~~i~l~~lR~~i~~VpQdp~lF~-gTIreNL~~~~----~-~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G 881 (987)
++ ..+|+.++||+|++.++. .|++|||.++. + +.++++ +.++++..++.+. .|+.+|..+
T Consensus 947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140 947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence 53 456788999999987765 69999997642 1 223332 5567777766543 466676543
Q ss_pred -CCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchh--hhccCEEEEEeC-
Q 001980 882 -VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLST--IRGVDCIGVVQD- 956 (987)
Q Consensus 882 -~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~t--i~~~D~Iivl~~- 956 (987)
..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|++.. +|+|||+++|+++. ...+|++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6799999999999999999999999999999999999999999999875 57999999999984 466899999996
Q ss_pred CEEEEecChh
Q 001980 957 GRIVEQGSHS 966 (987)
Q Consensus 957 G~ive~Gt~~ 966 (987)
|+++.+|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-66 Score=622.61 Aligned_cols=200 Identities=28% Similarity=0.462 Sum_probs=165.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
-|+++||+++|++ .++|+|+||+|++|+++||+|+||||||||+++|.|+++|++|+|.+ |.++ +|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4899999999953 35999999999999999999999999999999999999999999999 4332 59
Q ss_pred EEEcccc-cccc-ccHHHHhccCCCCC--C--HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 824 GLVQQEP-ALFA-ASIFDNIAYGKEGA--T--EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 824 ~~VpQdp-~lF~-gTIreNL~~~~~~~--s--d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
+|++|++ .++. .|+.+|+.++.+.. . +.++.+.++..++.+ +..+.+++ .||||||||++||||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~----~LSgGekqRl~la~a 454 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHP------KRAMTPVK----ALSGGERNRLLLARL 454 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCH------HHHhChhh----hCCHHHHHHHHHHHH
Confidence 9999986 3554 49999998653321 1 334555555555421 12344443 699999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEe-CCEEEEe-cChhHHh
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQ-DGRIVEQ-GSHSELV 969 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~-~G~ive~-Gt~~eLl 969 (987)
|+++|++|||||||++||+.+...+.+.|++. +.|||+|||+++.+.. ||+|++|+ +|+|+++ |++++.+
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 99999999999999999999999999999876 5699999999998865 89999998 8999875 6777664
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-65 Score=617.99 Aligned_cols=199 Identities=29% Similarity=0.454 Sum_probs=165.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+++ +.+|
T Consensus 508 ~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 59999999999532 3589999999999999999999999999999999999999999999976 3579
Q ss_pred EEEccccccccccHHHHhcc----CCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 824 GLVQQEPALFAASIFDNIAY----GKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 824 ~~VpQdp~lF~gTIreNL~~----~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
+|+||++. ...++.+|... ..+..+++++.++++..++.+.. .+. ....||||||||++||||++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~------~~~----~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL------ALQ----PMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH------hcC----CccccCHHHHHHHHHHHHHh
Confidence 99999973 22345555321 12345677888888888875321 122 23479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEE-EecChhHH
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIV-EQGSHSEL 968 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~iv-e~Gt~~eL 968 (987)
++|++|||||||++||+.+...+.+.+.+. + .|||+|||+++.+.. ||+|++|++|+++ ..|++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999999999999875 3 599999999999876 8999999999998 56777664
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-65 Score=575.15 Aligned_cols=457 Identities=24% Similarity=0.414 Sum_probs=357.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH-HHhcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR-WLRDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~-~~~~~ 177 (987)
-++++|++++|++ +++|+++||++.+||++|++|+||||||||+|+|+|.|+|++|+|.++|+++...++. .....
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4889999999984 4699999999999999999999999999999999999999999999999999887775 45567
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCCCC------HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHH
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPEAT------MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialA 250 (987)
|+.|+|+..|++. ||.|||.+|.+... ..++.+.+ .+.++.+ |.+........+||+||||-|+||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A-----~~~l~~l--g~~~~~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRA-----RELLARL--GLDIDPDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHH-----HHHHHHc--CCCCChhhhhhhCCHHHHHHHHHH
Confidence 9999999999976 99999999976432 23333222 2334444 332225666678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecCh-HHHHHhh
Q 001980 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTH-EELIAKA 327 (987)
Q Consensus 251 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~-~~l~~~~ 327 (987)
|||..+++|+|||||||+|+....+.+++.+++++ +|.++|+|||+++++.. ||||.||+||+.+..++. .++-.
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~-- 235 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSE-- 235 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCH--
Confidence 99999999999999999999999999999999997 69999999999999876 899999999998865431 11000
Q ss_pred hhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCchH
Q 001980 328 GAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGY 407 (987)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (987)
+
T Consensus 236 ------------------------------------------------------------------~------------- 236 (500)
T COG1129 236 ------------------------------------------------------------------D------------- 236 (500)
T ss_pred ------------------------------------------------------------------H-------------
Confidence 0
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF 487 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (987)
. ++..+.
T Consensus 237 --~-----------------------------------lv~~Mv------------------------------------ 243 (500)
T COG1129 237 --E-----------------------------------LVRLMV------------------------------------ 243 (500)
T ss_pred --H-----------------------------------HHHHhh------------------------------------
Confidence 0 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001980 488 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV 567 (987)
Q Consensus 488 ~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 567 (987)
|
T Consensus 244 ----------------------------------G--------------------------------------------- 244 (500)
T COG1129 244 ----------------------------------G--------------------------------------------- 244 (500)
T ss_pred ----------------------------------C---------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001980 568 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 647 (987)
Q Consensus 568 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (987)
T Consensus 245 -------------------------------------------------------------------------------- 244 (500)
T COG1129 245 -------------------------------------------------------------------------------- 244 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 001980 648 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTR 727 (987)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~ 727 (987)
| +.-+..+.
T Consensus 245 ---------------------------------------------------------------------r--~~~~~~~~ 253 (500)
T COG1129 245 ---------------------------------------------------------------------R--ELEDLFPE 253 (500)
T ss_pred ---------------------------------------------------------------------c--chhhhccc
Confidence 0 00000000
Q ss_pred CCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC
Q 001980 728 IDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 807 (987)
Q Consensus 728 ~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~id 807 (987)
.+ .+ .+..-.++++|++..- .++|+||++++||.+||.|--|||+|-++.+|+|..++.+|+|.+|
T Consensus 254 -~~-~~-----~~~~~~l~v~~l~~~~-------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~ 319 (500)
T COG1129 254 -PP-EE-----GIGEPVLEVRNLSGGG-------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLD 319 (500)
T ss_pred -cc-cc-----CCCCcEEEEecCCCCC-------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEEC
Confidence 00 00 0011136788876421 4899999999999999999999999999999999999999999999
Q ss_pred CccCCCCC-HHHHhcccEEEccccc----cccccHHHHhccCC-CCCCHH-HHHHHHHHcCchhhHhhCC---CcCCCcc
Q 001980 808 GKDIRRLN-LKSLRLKIGLVQQEPA----LFAASIFDNIAYGK-EGATEA-EVVEAARAANVHGFVSALP---NAYKTPV 877 (987)
Q Consensus 808 G~di~~i~-l~~lR~~i~~VpQdp~----lF~gTIreNL~~~~-~~~sd~-ei~~al~~a~l~~~i~~lp---~gldt~v 877 (987)
|.++.--+ .+..+..|+|||-|.- +...||++|+.++. ...+.. -+....++....+++..|. ...+.++
T Consensus 320 G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v 399 (500)
T COG1129 320 GKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI 399 (500)
T ss_pred CEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh
Confidence 99887666 4478999999999874 45779999998762 111111 2333444455556666552 2344555
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEe
Q 001980 878 GERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQ 955 (987)
Q Consensus 878 ge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~ 955 (987)
+ +||||.+|+++|||+|..+|+||||||||.++|..+.+.|.+.|+++. +|.+||+||-.+..+. .||||+||.
T Consensus 400 ~----~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~ 475 (500)
T COG1129 400 G----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMR 475 (500)
T ss_pred h----cCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEE
Confidence 4 699999999999999999999999999999999999999999999986 6899999999999886 699999999
Q ss_pred CCEEEEecChhH
Q 001980 956 DGRIVEQGSHSE 967 (987)
Q Consensus 956 ~G~ive~Gt~~e 967 (987)
+|+|+..=+.++
T Consensus 476 ~Gri~~e~~~~~ 487 (500)
T COG1129 476 EGRIVGELDREE 487 (500)
T ss_pred CCEEEEEecccc
Confidence 999997544433
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=583.92 Aligned_cols=485 Identities=27% Similarity=0.394 Sum_probs=351.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|.++|++++|++ .++|+|+||++.+|+++||||+||||||||||+|+|...|++|+|...+. -+|
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 4889999999974 45999999999999999999999999999999999999999999998751 269
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCCC--HHHHHHHHH-------------------------HHhHHHHHHhCCCCCcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEAT--MAEVEAAAS-------------------------AANAHSFITLLPNGYST 230 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~~--~~~~~~~~~-------------------------~~~~~~~~~~~~~g~~t 230 (987)
+|++|++.+.+. ||.+.+..+..... ..++..+.. .+.+...+..+ |+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~ 146 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD 146 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence 999999999866 99999987753211 011111100 01222233333 4444
Q ss_pred cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEE
Q 001980 231 QVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVI 309 (987)
Q Consensus 231 ~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l 309 (987)
. .....+||||||.|++|||||+.+||+|||||||++||..+..++.+.|.++. | |+|+||||.+++.. |++|+.+
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhhheEEe
Confidence 4 56677899999999999999999999999999999999999999999998764 5 99999999999998 7999999
Q ss_pred eCCEE-EEecChHHHHHhhhhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcc
Q 001980 310 QQGQV-VETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGR 388 (987)
Q Consensus 310 ~~G~i-~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (987)
+.|++ .+.|+++...+............... . .
T Consensus 224 d~g~l~~y~Gny~~~~~~r~~~~~~~~~~~~~------------~---------------------~------------- 257 (530)
T COG0488 224 DRGKLTPYKGNYSSYLEQKAERLRQEAAAYEK------------Q---------------------Q------------- 257 (530)
T ss_pred cCCceeEecCCHHHHHHHHHHHHHHHHHHHHH------------H---------------------H-------------
Confidence 99987 56777776554321110000000000 0 0
Q ss_pred cccccccccccCCCCCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHH
Q 001980 389 IEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFI 468 (987)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (987)
....+. ..|+
T Consensus 258 -----------------~~~~~~--------------------------------~~~i--------------------- 267 (530)
T COG0488 258 -----------------KELAKE--------------------------------QEWI--------------------- 267 (530)
T ss_pred -----------------HHHHHH--------------------------------HHHH---------------------
Confidence 000000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001980 469 YIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQ 548 (987)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~ 548 (987)
+|+
T Consensus 268 ---------------------------------------------------------~r~-------------------- 270 (530)
T COG0488 268 ---------------------------------------------------------RRG-------------------- 270 (530)
T ss_pred ---------------------------------------------------------HHH--------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHH
Q 001980 549 NMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILS 628 (987)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~ 628 (987)
T Consensus 271 -------------------------------------------------------------------------------- 270 (530)
T COG0488 271 -------------------------------------------------------------------------------- 270 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 629 LFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEI 708 (987)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (987)
........+..
T Consensus 271 --~~~~~~~k~a~------------------------------------------------------------------- 281 (530)
T COG0488 271 --KAAASKAKKAK------------------------------------------------------------------- 281 (530)
T ss_pred --HhccchHHHHH-------------------------------------------------------------------
Confidence 00000000000
Q ss_pred HHHHHHHHHHHHH--hcccCC-CCCC--CCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCC
Q 001980 709 IRGGESVGSVFST--LDRSTR-IDPD--DPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASG 783 (987)
Q Consensus 709 ~~~~~s~~ri~~~--~~~~~~-~~~~--~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sG 783 (987)
.....++++.+. ...+.. ..+. .....+....+--++++|+++.|+++ .++++++||.|.+|++||||||||
T Consensus 282 -sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG 358 (530)
T COG0488 282 -SRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNG 358 (530)
T ss_pred -HHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCC
Confidence 000000111100 000000 0000 00000001123359999999999643 469999999999999999999999
Q ss_pred CChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEcccc-ccc-cccHHHHhccCCCCCCHHHHHHHHHHcC
Q 001980 784 SGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEP-ALF-AASIFDNIAYGKEGATEAEVVEAARAAN 861 (987)
Q Consensus 784 sGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp-~lF-~gTIreNL~~~~~~~sd~ei~~al~~a~ 861 (987)
+|||||+++|.|-..|.+|+|.++-. -++||.+|+. .++ +.|+-|++....++..+.++...|.+.+
T Consensus 359 ~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 359 AGKSTLLKLLAGELGPLSGTVKVGET-----------VKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCHHHHHHHHhhhcccCCceEEeCCc-----------eEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 99999999999999999999998742 4699999998 444 3489999987776666889999999988
Q ss_pred chhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecC
Q 001980 862 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHR 941 (987)
Q Consensus 862 l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHR 941 (987)
+..- -..++|+ .||||||-|+.||+.++.+|.+|||||||.+||.+|...+.++|.++ .-|||+|||+
T Consensus 428 F~~~------~~~~~v~----~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHD 495 (530)
T COG0488 428 FTGE------DQEKPVG----VLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHD 495 (530)
T ss_pred CChH------HHhCchh----hcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCC
Confidence 7642 3345555 59999999999999999999999999999999999999999999986 4599999999
Q ss_pred chhhhc-cCEEEEEeCCEEEEe-cChhHHhcC
Q 001980 942 LSTIRG-VDCIGVVQDGRIVEQ-GSHSELVSR 971 (987)
Q Consensus 942 l~ti~~-~D~Iivl~~G~ive~-Gt~~eLl~~ 971 (987)
...+.. |++|+++++ ++.++ |++++..+.
T Consensus 496 r~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 496 RYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred HHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 999977 699999999 88887 888877654
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=595.72 Aligned_cols=529 Identities=14% Similarity=0.134 Sum_probs=432.8
Q ss_pred HHHHHHHhCCchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWP-----YSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLI 482 (987)
Q Consensus 408 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (987)
+++++++..|+|. .+++.+++.++...+....+++.+.+++.....+..........+.++++++.++..+..++
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~ 158 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYL 158 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777765 45566666667777777778888888776653322112111223444455555666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 483 QHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFI 562 (987)
Q Consensus 483 ~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 562 (987)
..++......++...+|++.+++....++.|||. +.|.+.+|+++|++.+...+...+..++..++.++++++.++.
T Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~---~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 159 LKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS---RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC---CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888899999999999988889999984 6799999999999999999999999999999999988887776
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHH
Q 001980 563 -VEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQT 641 (987)
Q Consensus 563 -~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~ 641 (987)
.+|.+++++++.+|+.+++..+..+.+.+..++.+...+.....+.|.++|+++||+|+.++.+.+++.+..+...+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999888888888889999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-c----cCCCHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHH
Q 001980 642 LRRSLTAGILFGISQFALHA--SEALILWYGVHLVG-K----GVSTFSKVIKV-FVV---LVVTANSVAETVSLAPEIIR 710 (987)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~lv~-~----~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~ 710 (987)
.+..........+..++... ..++.++.|...+. . |.++.+.++.. +.+ +.....++..+.....++.+
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777777776543 22333334443332 2 67888876653 332 34557888999999999999
Q ss_pred HHHHHHHHHHHhcccCCCC------CCCCC---C-------------CCCCCccccEEEEeEEEECCCCCCccceeeeeE
Q 001980 711 GGESVGSVFSTLDRSTRID------PDDPD---A-------------EPVETIRGEIELRHVDFAYPSRPDVVVFKDFNL 768 (987)
Q Consensus 711 ~~~s~~ri~~~~~~~~~~~------~~~~~---~-------------~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl 768 (987)
...+.+|++++++.+++.. +..+. . .......+.|+++||+|+|+++ .++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceE
Confidence 9999999999987543211 00000 0 0011234679999999999743 369999999
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCC---
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK--- 845 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~--- 845 (987)
+|++||++||+|+||||||||+++|.|+++|++|+|.+|+ |++++||||+|.+|++|++|||.++.
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999874 67899999999999999999998864
Q ss_pred ----CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH
Q 001980 846 ----EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 921 (987)
Q Consensus 846 ----~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~ 921 (987)
++.++++++++++.+++.+++.. |.|+||..+ .+.+||||||||++||||++++|++||||||||+||+++++.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~ 620 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY 620 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 34678899999999999999987 999999986 567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeC
Q 001980 922 LQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 956 (987)
Q Consensus 922 I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~ 956 (987)
+++.+++. ++|+|+||||++++..||+|++|+.
T Consensus 621 l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 621 MYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999874 8999999999999999999999973
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-65 Score=603.06 Aligned_cols=192 Identities=23% Similarity=0.315 Sum_probs=163.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.++++|++++|.+ ..|+++||+|++||++||+|+||||||||+++|.|+.+|++|+|.++ .++
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 4899999999953 25999999999999999999999999999999999999999999986 159
Q ss_pred EEEcccccc-ccccHHHHhccCCCCCC-HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 001980 824 GLVQQEPAL-FAASIFDNIAYGKEGAT-EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901 (987)
Q Consensus 824 ~~VpQdp~l-F~gTIreNL~~~~~~~s-d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~ 901 (987)
+|+||++.+ ++.|+++|+.++..... +..+.++++..++.+... .++ ..||||||||++|||||+++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-------~~~----~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-------KNV----KDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-------CCc----ccCCHHHHHHHHHHHHHhcC
Confidence 999999875 56799999986532222 334567777777765433 333 36999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecC
Q 001980 902 PAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGS 964 (987)
Q Consensus 902 p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt 964 (987)
|+||||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+.. ||||++|++ ++...|+
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 999999999999999999999999998753 7899999999998865 899999965 8877776
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-60 Score=622.14 Aligned_cols=540 Identities=19% Similarity=0.216 Sum_probs=403.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 420 PYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVR 499 (987)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 499 (987)
+.++..++..++..++....++++..+++.+...... ......+++.++++.++..++.....+...+.+.++...++
T Consensus 317 ~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~ 394 (1522)
T TIGR00957 317 PYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAP--DWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVM 394 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555566666777666544322111 11111122223333333333333334456778889999999
Q ss_pred HHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001980 500 RMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLV 579 (987)
Q Consensus 500 ~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~ 579 (987)
..+|+|+++.+..+++. ...|+++|+++.|++.+.... ..+..++...+.+++++++++......+++.++++++++
T Consensus 395 ~~iy~K~L~l~~~~~~~--~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~ 471 (1522)
T TIGR00957 395 GAVYRKALVITNSARKS--STVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMV 471 (1522)
T ss_pred HHHHHHHHhCChhhcCC--CCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999998864 788999999999999998855 455555555555555555444332223344444444444
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 580 LANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFAL 659 (987)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (987)
.+.+...+.+++..++......+....+.|.++|+++||.|++|+.+.+++.+..+...+...+......+.........
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~ 551 (1522)
T TIGR00957 472 PLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTP 551 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666667777778889999999999999999999999999987766655444333333322221111111
Q ss_pred HHHHHHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCC
Q 001980 660 HASEALILWYGVHLVGK--GVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEP 737 (987)
Q Consensus 660 ~~~~~~~~~~g~~lv~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~ 737 (987)
..+....++.+++.. +.++.+..+..+.++.....|+..+......+.++..+.+|+.++++.+++... ......
T Consensus 552 --~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~-~~~~~~ 628 (1522)
T TIGR00957 552 --FLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPD-SIERRT 628 (1522)
T ss_pred --HHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-cccccc
Confidence 111222344455543 467888888777777777788999999999999999999999999976533211 000011
Q ss_pred CCC-ccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH
Q 001980 738 VET-IRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL 816 (987)
Q Consensus 738 ~~~-~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l 816 (987)
..+ ..+.|+++|++|+|++. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||
T Consensus 629 ~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------- 699 (1522)
T TIGR00957 629 IKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------- 699 (1522)
T ss_pred cCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--------
Confidence 111 12479999999999643 34699999999999999999999999999999999999999999999997
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+|+||||+|.+|++||||||.++.+ .++++..++++.+++.+.+..+|+|++|.+|++|.+||||||||++|||
T Consensus 700 -----~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLAR 773 (1522)
T TIGR00957 700 -----SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLAR 773 (1522)
T ss_pred -----EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHH
Confidence 5999999999999999999998865 5678888999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHH---HcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALER---LMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~---~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
|++++|+|+|||||||+||+++++.|.+.+.+ ..+++|+|+|||+++.+..||+|++|++|+|++.|+|++++++ +
T Consensus 774 Al~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~-~ 852 (1522)
T TIGR00957 774 AVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR-D 852 (1522)
T ss_pred HHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhc-c
Confidence 99999999999999999999999999999964 4578999999999999999999999999999999999999986 7
Q ss_pred chHHHHHHhh
Q 001980 974 GAYSRLLQLQ 983 (987)
Q Consensus 974 g~f~~l~~~q 983 (987)
+.|+++++.+
T Consensus 853 ~~~~~l~~~~ 862 (1522)
T TIGR00957 853 GAFAEFLRTY 862 (1522)
T ss_pred hhHHHHHHhh
Confidence 8898887643
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-63 Score=539.27 Aligned_cols=462 Identities=26% Similarity=0.460 Sum_probs=362.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL-RWLRDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ 177 (987)
.++++++++.|| ...+++||||++++||++||+|+||+|||||+++|.|+|+|++|+|.++|+++.-.++ +..+..
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 589999999998 3568999999999999999999999999999999999999999999999999987766 567778
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
||+|+|++.|++. ||.|||.+|.+......+........+.+..+.+ |++-...+....||-||||||.|-+|||++
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHHHhcC
Confidence 9999999999977 9999999998642111111111122223334444 777778888899999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhhhhHHHHH
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKAGAYASLI 334 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 334 (987)
|++||||||||-|-|...+.+++.++++. .|+|||+|||++.++.. |||+-||++|+++..-++ .
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~--~----------- 225 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDP--V----------- 225 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecC--C-----------
Confidence 99999999999999999999999999986 59999999999999877 899999999998643210 0
Q ss_pred HHHHhhhccccCCCCcccccccccccccccccccccccccccccccccCCCCcccccccccccccCCCCCchHHHHHHHH
Q 001980 335 RFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKL 414 (987)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (987)
.+ . .. . .+
T Consensus 226 -------------~~---~-----t~-----------------------------~-------------------el--- 233 (501)
T COG3845 226 -------------AE---T-----TE-----------------------------E-------------------EL--- 233 (501)
T ss_pred -------------CC---C-----CH-----------------------------H-------------------HH---
Confidence 00 0 00 0 00
Q ss_pred hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 415 NAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENL 494 (987)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (987)
...+...
T Consensus 234 --------------------------------a~lMvG~----------------------------------------- 240 (501)
T COG3845 234 --------------------------------AELMVGR----------------------------------------- 240 (501)
T ss_pred --------------------------------HHHhcCC-----------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001980 495 TTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGT 574 (987)
Q Consensus 495 ~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~ 574 (987)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T COG3845 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001980 575 YPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGI 654 (987)
Q Consensus 575 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (987)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T COG3845 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 001980 655 SQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPD 734 (987)
Q Consensus 655 ~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~ 734 (987)
.+ .......+
T Consensus 241 -----------------------~v-------------------------------------------~~~~~~~~---- 250 (501)
T COG3845 241 -----------------------EV-------------------------------------------VLRVVKPP---- 250 (501)
T ss_pred -----------------------cc-------------------------------------------ccccccCC----
Confidence 00 00000000
Q ss_pred CCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccC-CC
Q 001980 735 AEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI-RR 813 (987)
Q Consensus 735 ~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di-~~ 813 (987)
..|.+--++++|++..-+ + +.+.+++|||+|++||.+||.|-.|-|-+-|+.+|.|+.+|.+|+|.++|.|+ ..
T Consensus 251 ---~~pg~~vL~V~~L~v~~~-~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~ 325 (501)
T COG3845 251 ---STPGEVVLEVEDLSVKDR-R-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGR 325 (501)
T ss_pred ---CCCCCeEEEEeeeEeecC-C-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEecccc
Confidence 011122589999998543 2 34689999999999999999999999999999999999999999999999997 66
Q ss_pred CCHHHHh-cccEEEccccc----cccccHHHHhccCCCC---------CCHHHHHHHHHHcCchhhHhhC---CCcCCCc
Q 001980 814 LNLKSLR-LKIGLVQQEPA----LFAASIFDNIAYGKEG---------ATEAEVVEAARAANVHGFVSAL---PNAYKTP 876 (987)
Q Consensus 814 i~l~~lR-~~i~~VpQdp~----lF~gTIreNL~~~~~~---------~sd~ei~~al~~a~l~~~i~~l---p~gldt~ 876 (987)
.+...+| ..++|||.|.+ ....|+.||+.+.... ....++...++ +.++.. +.+.+++
T Consensus 326 ~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~-----~li~~fdVr~~~~~~~ 400 (501)
T COG3845 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR-----ELIEEFDVRAPSPDAP 400 (501)
T ss_pred CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH-----HHHHHcCccCCCCCcc
Confidence 6777654 57999999985 5678999999765432 11233322222 222221 3455555
Q ss_pred cCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEE
Q 001980 877 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVV 954 (987)
Q Consensus 877 vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl 954 (987)
+. +||||+.||+-+||-|.++|++||..+||-+||..+.+.|++.|.+.. +|+.|++|+-+|+.+.. ||||.||
T Consensus 401 a~----~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi 476 (501)
T COG3845 401 AR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVI 476 (501)
T ss_pred hh----hcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeee
Confidence 54 699999999999999999999999999999999999999999999876 68999999999998865 8999999
Q ss_pred eCCEEEEecChhH
Q 001980 955 QDGRIVEQGSHSE 967 (987)
Q Consensus 955 ~~G~ive~Gt~~e 967 (987)
.+|+|+....+++
T Consensus 477 ~~Gri~~~~~~~~ 489 (501)
T COG3845 477 YEGRIVGIVPPEE 489 (501)
T ss_pred eCCceeccccccc
Confidence 9999998877765
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-63 Score=556.57 Aligned_cols=329 Identities=36% Similarity=0.506 Sum_probs=300.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001980 7 LGCTYGIACMSWALVFWYAGVFIRN-GVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ 85 (987)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 85 (987)
-++..++++++++++..|.+....+ |.++....+.++...--.+.|+..+...++.-..+.+|.+++..+++.+++...
T Consensus 227 s~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~ 306 (559)
T COG4988 227 SAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPG 306 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCC
Confidence 4567889999999999998888888 899998888888888888999999999999999999999999999988754322
Q ss_pred CCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 001980 86 DPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 165 (987)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~ 165 (987)
...........+..++.+|++|.|++.+ ++++|+||++++|+++||||+||||||||+++|+|+++|++|+|.+||++
T Consensus 307 ~~~~~~~~~~~~~ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~ 384 (559)
T COG4988 307 SGEKAEVANEPPIEISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGID 384 (559)
T ss_pred CccccccccCCCceeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCcc
Confidence 2111011122233455669999998643 68999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 166 IKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 166 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
+++++.+.||++++||+|+|++|++|+||||++++++.+++++.++++.+++.+++.. |+|+||.+||+|.+|||||+|
T Consensus 385 l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~Q 463 (559)
T COG4988 385 LRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQ 463 (559)
T ss_pred ccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|++|||||+++++++|||||||+||.++++.+.+.|.++.+++|+|+||||++.+..+|+|++|++|+++++|+|+++.+
T Consensus 464 RlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 464 RLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred HHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHH
Q 001980 326 KAGAYASLIRFQE 338 (987)
Q Consensus 326 ~~~~~~~~~~~~~ 338 (987)
+++.|++++..|+
T Consensus 544 ~~~~y~~l~~~q~ 556 (559)
T COG4988 544 KQGLYANLLKQQE 556 (559)
T ss_pred cCcHHHHHHHHHh
Confidence 9999999987664
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-62 Score=590.61 Aligned_cols=328 Identities=45% Similarity=0.720 Sum_probs=304.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001980 6 GLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ 85 (987)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 85 (987)
..++..++..+..++++++|++.+..+.+++|.+.+++.+......|+..+...+..+..+..|++|++++++.+++...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 317 (567)
T COG1132 238 LAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED 317 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC
Confidence 34677788888999999999999999999999999988888888899999999999999999999999999998654322
Q ss_pred CCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 001980 86 DPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 165 (987)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~ 165 (987)
.... .....+.|+++||+|+|++ +.++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|.+||+|
T Consensus 318 ~~~~---~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~d 392 (567)
T COG1132 318 PPDP---LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGID 392 (567)
T ss_pred CCCC---CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEe
Confidence 1111 1223456999999999984 3459999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 166 IKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 166 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
+++++.+++|++|+||||+|+||++||+|||.+|.|+.++++++++|+.++++++++.+|+|+||.+||+|.+|||||||
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQ 472 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQ 472 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|++||||++++|+|+|||||||+||+++++.+++.+.++.++||+|+|+||++.++.||+|+||++|+|++.|+|+||++
T Consensus 473 rlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 473 RLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHH
Q 001980 326 KAGAYASLIRFQE 338 (987)
Q Consensus 326 ~~~~~~~~~~~~~ 338 (987)
++|.|++++..+.
T Consensus 553 ~~g~y~~l~~~~~ 565 (567)
T COG1132 553 KGGLYARLYQAQG 565 (567)
T ss_pred cCCHHHHHHHHhh
Confidence 9999999987653
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-62 Score=589.75 Aligned_cols=326 Identities=29% Similarity=0.418 Sum_probs=280.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001980 8 GCTYGIACMSWALVFWYAGVFIRNGVTDGGKA---------FTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIK 78 (987)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~ 78 (987)
++..++..++.+++++++++.+. |.++.|.+ +.++.+......|+..+...+..+.+++.+++|+.++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 329 (588)
T PRK11174 251 AVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLE 329 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444444455455566665544 67776643 222233344568899999999999999999999999998
Q ss_pred cCCCCCCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccE
Q 001980 79 QKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158 (987)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~ 158 (987)
.+++... ......+....+.|+++||+|.|+++ .++|+|+||+|++|+++|||||||||||||+++|+|++ |++|+
T Consensus 330 ~~~~~~~-~~~~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~ 405 (588)
T PRK11174 330 TPLAHPQ-QGEKELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGS 405 (588)
T ss_pred CCCcccC-CCccccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcE
Confidence 7543211 11101111123469999999877532 45899999999999999999999999999999999999 99999
Q ss_pred EEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCC
Q 001980 159 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQ 238 (987)
Q Consensus 159 i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~ 238 (987)
|.+||+|+++++.+++|++|+||||+|+||++||+|||++|.|+.++++++++|+.++++++++.+|+|++|.+||+|.+
T Consensus 406 I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~ 485 (588)
T PRK11174 406 LKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAG 485 (588)
T ss_pred EEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCC
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEec
Q 001980 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETG 318 (987)
Q Consensus 239 LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g 318 (987)
|||||||||+|||||+++|+|||||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|+++++|
T Consensus 486 LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G 565 (588)
T PRK11174 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQG 565 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChHHHHHhhhhHHHHHHHHH
Q 001980 319 THEELIAKAGAYASLIRFQE 338 (987)
Q Consensus 319 ~~~~l~~~~~~~~~~~~~~~ 338 (987)
+|+|++++++.|++++..|.
T Consensus 566 ~~~eL~~~~~~y~~l~~~q~ 585 (588)
T PRK11174 566 DYAELSQAGGLFATLLAHRQ 585 (588)
T ss_pred CHHHHHhcchHHHHHHHHhh
Confidence 99999999999999886553
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-61 Score=594.66 Aligned_cols=324 Identities=35% Similarity=0.465 Sum_probs=296.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001980 6 GLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ 85 (987)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 85 (987)
..++..++..+..++++|+|++++.+|.+|.|.++++..+......|+..+...+..+++++.+++|+.++++.+++...
T Consensus 361 ~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 440 (686)
T TIGR03797 361 LTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE 440 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 34555666778888899999999999999999999988888888899999999999999999999999999987554221
Q ss_pred CCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 001980 86 DPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 165 (987)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~ 165 (987)
. ...+....+.|+++||+|+|++. +.++|+|+||+|++||++||||+||||||||+|+|+|+++|++|+|.+||+|
T Consensus 441 ~---~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 516 (686)
T TIGR03797 441 A---KTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQD 516 (686)
T ss_pred C---cCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEE
Confidence 1 11112234579999999999743 3569999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 166 IKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 166 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
+++++.+++|++|+||||+|++|++||+|||.++.| .++++++++++.++++++++.+|+|++|.+|++|.+|||||||
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQ 595 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQ 595 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHH
Confidence 999999999999999999999999999999999988 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
||+|||||+++|+|||||||||+||+++++.+.+.|+++ ++|+|+||||++.++.||+|++|++|+|+++|+|+++++
T Consensus 596 RialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 596 RLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999999886 689999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHH
Q 001980 326 KAGAYASLIRF 336 (987)
Q Consensus 326 ~~~~~~~~~~~ 336 (987)
+++.|++++..
T Consensus 674 ~~~~y~~l~~~ 684 (686)
T TIGR03797 674 REGLFAQLARR 684 (686)
T ss_pred CCcHHHHHHHh
Confidence 99999988754
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=524.74 Aligned_cols=327 Identities=43% Similarity=0.613 Sum_probs=300.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 001980 11 YGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNG 90 (987)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~ 90 (987)
..+..++.+..-.+.+|++..+.+|+|+..-+..+++.+.+|+..+......++....-+++++++++++++..+.+ +.
T Consensus 450 n~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P-~a 528 (790)
T KOG0056|consen 450 NGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLP-GA 528 (790)
T ss_pred hhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCC-CC
Confidence 34444555555566678888999999998888889999999999999999999999999999999999887764332 22
Q ss_pred CcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC
Q 001980 91 RCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ 170 (987)
Q Consensus 91 ~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~ 170 (987)
.+.....+.|+|+||+|.|+. .+++|+||||+++||+.+|+|||||+||||++++|.++++.++|.|.+||+|++...
T Consensus 529 ~pl~~~~G~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt 606 (790)
T KOG0056|consen 529 PPLKVTQGKIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVT 606 (790)
T ss_pred CCccccCCeEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHH
Confidence 333445688999999999974 467999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHH
Q 001980 171 LRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialA 250 (987)
..++|++||.||||..|||+||..||.+++|.++.+++.++++.++.||.+..+|+|++|.+||+|-.||||||||||||
T Consensus 607 ~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiA 686 (790)
T KOG0056|consen 607 QSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIA 686 (790)
T ss_pred HHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh-hhh
Q 001980 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK-AGA 329 (987)
Q Consensus 251 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~ 329 (987)
|+++++|.|++|||+|||||..+++.|+.+|.++..++|.|+|+||++.+-+||.|+++++|+|+|.|+|+|++++ .|.
T Consensus 687 RtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~ 766 (790)
T KOG0056|consen 687 RTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGA 766 (790)
T ss_pred HHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987 799
Q ss_pred HHHHHHHHHhh
Q 001980 330 YASLIRFQEMV 340 (987)
Q Consensus 330 ~~~~~~~~~~~ 340 (987)
|+++++.|+.+
T Consensus 767 Ya~MWq~qqa~ 777 (790)
T KOG0056|consen 767 YADMWQAQQAM 777 (790)
T ss_pred HHHHHHHHHhc
Confidence 99999876654
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=531.91 Aligned_cols=325 Identities=30% Similarity=0.507 Sum_probs=280.8
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCC
Q 001980 6 GLGCTYGIACMSWA-LVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSF-SNLGAFSKGKAAGYKLMEIIKQKPSI 83 (987)
Q Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ri~~~l~~~~~~ 83 (987)
......++..+.++ +++|.+ ..+..|..+...+..+++.++....++..+. ..+....+...|+.|+.++++++++.
T Consensus 245 ~~a~~~l~~g~~v~~~l~w~a-~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~ 323 (573)
T COG4987 245 SDAILLLIAGLLVIGLLLWMA-AQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEV 323 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCccc
Confidence 33444444445555 334444 3345566665555555555455555555555 67788889999999999999987764
Q ss_pred CCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 001980 84 IQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163 (987)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g 163 (987)
..... .. +..+..++++||+|+|+++ +.++|+|+||++++||++||+|+||||||||+++|.|.++|++|+|.++|
T Consensus 324 ~~~~~--~~-~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g 399 (573)
T COG4987 324 TFPDE--QT-ATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNG 399 (573)
T ss_pred CCCcc--cc-CCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECC
Confidence 32211 11 1112279999999999975 45799999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHH
Q 001980 164 VDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ 243 (987)
Q Consensus 164 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 243 (987)
.++..++.+.+|+.|++++|.+++|++|+|||+.+++|++++++++++++.+++++.++..|+|++|++||.|..|||||
T Consensus 400 ~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE 479 (573)
T COG4987 400 VEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGE 479 (573)
T ss_pred cChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHH
Q 001980 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 244 kqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 323 (987)
|||+||||+|++|++++||||||.+||+.|++.+++.+.+..+|||+|+||||+..++.+|||++|++|+++++|+|+++
T Consensus 480 ~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~L 559 (573)
T COG4987 480 RRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAEL 559 (573)
T ss_pred HHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhh
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHH
Q 001980 324 IAKAGAYASLIR 335 (987)
Q Consensus 324 ~~~~~~~~~~~~ 335 (987)
++++|.|.++++
T Consensus 560 l~~~g~~~~l~q 571 (573)
T COG4987 560 LANNGRYKRLYQ 571 (573)
T ss_pred hccccHHHHHhc
Confidence 999999988763
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-61 Score=529.38 Aligned_cols=320 Identities=38% Similarity=0.572 Sum_probs=283.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 001980 12 GIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGR 91 (987)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~ 91 (987)
.+.....+.+.+.+..-+.++.+|.+.+.........+..|+..+...+..+.++..-+.-++...+....+.. ...
T Consensus 267 ~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~---~~~ 343 (591)
T KOG0057|consen 267 AIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE---AAL 343 (591)
T ss_pred HHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh---ccC
Confidence 33334445555666666788899999988777777777789988988888888888777766655433222111 112
Q ss_pred cCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH
Q 001980 92 CLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL 171 (987)
Q Consensus 92 ~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~ 171 (987)
+....++.|+|+||+|+|++ ++++|+++||+|++||++||||+|||||||++|+|.++++ ++|+|++||+|+++++.
T Consensus 344 ~i~~~~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~ 420 (591)
T KOG0057|consen 344 PIELFGGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSL 420 (591)
T ss_pred CcccCCCcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhCh
Confidence 22334567999999999984 4569999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
+.+|+.||||||+..||++||.+||.+|++..+++++.++|+.++++|.+..+|+||+|.+||+|..|||||||||+|||
T Consensus 421 ~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaR 500 (591)
T KOG0057|consen 421 ESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLAR 500 (591)
T ss_pred HHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHH
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYA 331 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 331 (987)
|+++||+|+++|||||+||.++|+.+.+.+.+...+||+|+|.||+.+++.+|+|+++++|++.+.|+|+|++...+.|+
T Consensus 501 a~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~ 580 (591)
T KOG0057|consen 501 AFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYA 580 (591)
T ss_pred HHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHH
Confidence 99999999999999999999999999999999878999999999999999999999999999999999999999888888
Q ss_pred HHHHHH
Q 001980 332 SLIRFQ 337 (987)
Q Consensus 332 ~~~~~~ 337 (987)
.++..+
T Consensus 581 ~~w~~~ 586 (591)
T KOG0057|consen 581 DLWTTQ 586 (591)
T ss_pred HHhccc
Confidence 887654
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-61 Score=593.20 Aligned_cols=326 Identities=34% Similarity=0.524 Sum_probs=295.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001980 6 GLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ 85 (987)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 85 (987)
...+..++..++.++++|+|++++.+|.+|+|.++++..+......|+..+...+..+++++.+++|+.++++.+++...
T Consensus 379 ~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 458 (710)
T TIGR03796 379 LGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLL 458 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc
Confidence 34556667777888899999999999999999999988888888899999999999999999999999999987654321
Q ss_pred CCC---C-CCcC-CCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE
Q 001980 86 DPT---N-GRCL-DEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL 160 (987)
Q Consensus 86 ~~~---~-~~~~-~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~ 160 (987)
... . .... +...+.|+++||+|+|++. +.++|+|+||+|++||+++||||||||||||+++|+|+++|++|+|.
T Consensus 459 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 537 (710)
T TIGR03796 459 EEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537 (710)
T ss_pred ccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 110 0 0111 2234579999999999853 34699999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCC
Q 001980 161 LDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240 (987)
Q Consensus 161 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LS 240 (987)
+||.|+++++.+++|++|+||||+|++|++||+|||.++.|+.++++++++++.+++++++..+|+|++|.+||+|.+||
T Consensus 538 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LS 617 (710)
T TIGR03796 538 FDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLS 617 (710)
T ss_pred ECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCC
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecCh
Q 001980 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTH 320 (987)
Q Consensus 241 gGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~ 320 (987)
|||||||+|||||+++|+|+|||||||+||+++++.+.+.|++ .++|+|+||||++.++.||+|++|++|++++.|+|
T Consensus 618 GGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~ 695 (710)
T TIGR03796 618 GGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTH 695 (710)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCH
Confidence 9999999999999999999999999999999999999999986 48999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHH
Q 001980 321 EELIAKAGAYASLI 334 (987)
Q Consensus 321 ~~l~~~~~~~~~~~ 334 (987)
++++++++.|++++
T Consensus 696 ~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 696 EELWAVGGAYARLI 709 (710)
T ss_pred HHHHHcCCcHHHHh
Confidence 99999989888765
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-61 Score=588.88 Aligned_cols=322 Identities=42% Similarity=0.670 Sum_probs=291.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 001980 8 GCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDP 87 (987)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 87 (987)
.+..++..++.++++++|++++.+|.+++|.+++++.+......|+..+...+..+++++.+.+|+.++++.+++.+...
T Consensus 389 ~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~ 468 (711)
T TIGR00958 389 WTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTG 468 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 34445556667778899999999999999999999999888899999999999999999999999999998765432111
Q ss_pred CCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC
Q 001980 88 TNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK 167 (987)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~ 167 (987)
...+.+..+.|+++||+|+|+++++.++|+|+||+|++||+++||||||||||||+++|+|+++|++|+|.+||+|++
T Consensus 469 --~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~ 546 (711)
T TIGR00958 469 --TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLV 546 (711)
T ss_pred --CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHH
Confidence 111122345699999999998654567999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHH
Q 001980 168 TLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247 (987)
Q Consensus 168 ~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRi 247 (987)
+++.+++|++|+||+|+|++|++||+|||.+|.++.++++++++++.++++++++.+|+|++|.+|++|.+|||||||||
T Consensus 547 ~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRl 626 (711)
T TIGR00958 547 QYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRI 626 (711)
T ss_pred hcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHH
Confidence 99999999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhh
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
+||||++++|+|+|||||||+||+++++.+.+ . ...+++|+|+||||++.++.+|+|++|++|+|+++|+|+|+++++
T Consensus 627 alARALl~~p~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~ 704 (711)
T TIGR00958 627 AIARALVRKPRVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ 704 (711)
T ss_pred HHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCC
Confidence 99999999999999999999999999999998 3 234689999999999999999999999999999999999999988
Q ss_pred hhHHHH
Q 001980 328 GAYASL 333 (987)
Q Consensus 328 ~~~~~~ 333 (987)
+.|+++
T Consensus 705 ~~y~~l 710 (711)
T TIGR00958 705 GCYKHL 710 (711)
T ss_pred CchHhc
Confidence 888764
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-60 Score=574.83 Aligned_cols=327 Identities=43% Similarity=0.631 Sum_probs=295.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 001980 7 LGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQD 86 (987)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 86 (987)
..+..++..++.++++++|++.+..|.+++|.+++++.+......|+..+...+..+..++.+++|+.++++.+++.+..
T Consensus 252 ~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 331 (582)
T PRK11176 252 DPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEG 331 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCC
Confidence 44556666677778889999999999999999888887777788999999999999999999999999999765432111
Q ss_pred CCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 001980 87 PTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI 166 (987)
Q Consensus 87 ~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~ 166 (987)
. ...+...+.|+++|++|+|++. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.|+
T Consensus 332 ~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i 407 (582)
T PRK11176 332 K---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDL 407 (582)
T ss_pred C---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEh
Confidence 1 1112223469999999999753 35699999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCC-CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 167 KTLQLRWLRDQIGLVNQEPALFATTILENILYGKPE-ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 167 ~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
++++.+++|++|+||||+|++|++||+|||.+|.++ .++++++++++.++++++++.+|+|++|.+|++|.+|||||||
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQ 487 (582)
T PRK11176 408 RDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQ 487 (582)
T ss_pred hhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHH
Confidence 999999999999999999999999999999999764 6889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
||+|||||+++|+|+|||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|++++.|+|+++++
T Consensus 488 Ri~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 488 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999999877899999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHH
Q 001980 326 KAGAYASLIRFQ 337 (987)
Q Consensus 326 ~~~~~~~~~~~~ 337 (987)
+++.|++++..+
T Consensus 568 ~~~~y~~l~~~~ 579 (582)
T PRK11176 568 QNGVYAQLHKMQ 579 (582)
T ss_pred CCChHHHHHHHH
Confidence 999999988654
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-60 Score=586.58 Aligned_cols=324 Identities=32% Similarity=0.498 Sum_probs=294.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 001980 7 LGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQD 86 (987)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 86 (987)
.++..++..++.++++|+|++++.+|.+|+|.++++..+......|+..+...+..+++++.+.+|+.++++.+++.+..
T Consensus 382 ~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 461 (708)
T TIGR01193 382 QAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINK 461 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 34555666677788899999999999999999999888888888999999999999999999999999999876543211
Q ss_pred CCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 001980 87 PTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI 166 (987)
Q Consensus 87 ~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~ 166 (987)
. .....+...+.|+++||+|+|++ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+
T Consensus 462 ~-~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i 538 (708)
T TIGR01193 462 K-KRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSL 538 (708)
T ss_pred c-cccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEH
Confidence 1 10111223457999999999974 24689999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcceEEEcCCCCCchhcHHHHHhcC-CCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 167 KTLQLRWLRDQIGLVNQEPALFATTILENILYG-KPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 167 ~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
++++.+++|++|+||||+|++|++||+|||.++ .++.++++++++++.+++++++..+|.|++|.+|++|.+|||||||
T Consensus 539 ~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQ 618 (708)
T TIGR01193 539 KDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQ 618 (708)
T ss_pred HHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHH
Confidence 999999999999999999999999999999998 5778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
||+||||++++|+|||||||||+||+++++.+.+.|.++ +++|+|+||||++.++.||+|++|++|++++.|+|+++++
T Consensus 619 RialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 619 RIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999999885 6899999999999999999999999999999999999999
Q ss_pred hhhhHHHHH
Q 001980 326 KAGAYASLI 334 (987)
Q Consensus 326 ~~~~~~~~~ 334 (987)
+++.|++++
T Consensus 698 ~~~~y~~l~ 706 (708)
T TIGR01193 698 RNGFYASLI 706 (708)
T ss_pred cCCcHHHHh
Confidence 889998775
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-60 Score=581.94 Aligned_cols=319 Identities=34% Similarity=0.521 Sum_probs=290.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001980 6 GLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ 85 (987)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 85 (987)
...+..++..++.++++|+|++++.+|.+|+|.+++++.+......|+..+...+..+..++.+.+|+.++++.+++...
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 34455666667788889999999999999999999988888888899999999999999999999999999987654221
Q ss_pred CCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 001980 86 DPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 165 (987)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~ 165 (987)
.. .....+...+.|+++||+|+|++. +.++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|.+||+|
T Consensus 451 ~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 528 (694)
T TIGR03375 451 GT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVD 528 (694)
T ss_pred CC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 11 111112234579999999999753 3468999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 166 IKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 166 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
+++++..++|++|+||||+|++|++||+|||.++.|+.++++++++++.++++++++.+|+|++|.+||+|.+|||||||
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQ 608 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQ 608 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|++|||||+++|+++|||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|+++++|+|+|+++
T Consensus 609 RlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~ 688 (694)
T TIGR03375 609 AVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688 (694)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999976
Q ss_pred h
Q 001980 326 K 326 (987)
Q Consensus 326 ~ 326 (987)
+
T Consensus 689 ~ 689 (694)
T TIGR03375 689 A 689 (694)
T ss_pred H
Confidence 4
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=583.79 Aligned_cols=525 Identities=19% Similarity=0.214 Sum_probs=393.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 428 GSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAIL 507 (987)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll 507 (987)
..++..++....++++..++..+. ............+++.++++.++..++.....+.....+.++...+...+|+|++
T Consensus 88 ~~~~~~~~~~~~P~ll~~li~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L 166 (1490)
T TIGR01271 88 LLYFGEATKAVQPLLLGRIIASYD-PFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTL 166 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455556666666665442 1111100111123333333334444555555666667777788888888899999
Q ss_pred hCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 508 RNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQL 587 (987)
Q Consensus 508 ~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~ 587 (987)
+.+...++. .++|.++|++++|++.+...+... ..++...+.+++++++++....+.+++.++++++++.+..+..+
T Consensus 167 ~l~~~~~~~--~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~ 243 (1490)
T TIGR01271 167 KLSSRVLDK--ISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQ 243 (1490)
T ss_pred hCCHHHhcC--CCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988874 788999999999999999976543 44445555555555555555455566666667776666666666
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 588 SLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALIL 667 (987)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (987)
++.+..++......+....+.|.++|+++||.|++|+.|.+++.+.-+...+...+......+...+..... ..+..+
T Consensus 244 ~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 321 (1490)
T TIGR01271 244 KMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSG--FFVVFL 321 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 666667777777778889999999999999999999999988887766555544444433322222222211 223344
Q ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEE
Q 001980 668 WYGVHLVGKGVSTFSKVIKVFVVLVVTANSVA-ETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIE 746 (987)
Q Consensus 668 ~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~ 746 (987)
.++.+.+..+ .+.+.+++++.++.....++. .+......+.++..+++|+.+++..++... .. . ......|+
T Consensus 322 ~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~-~~---~--~~~~~~i~ 394 (1490)
T TIGR01271 322 SVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKT-LE---Y--NLTTTEVE 394 (1490)
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc-cc---c--cCCCCceE
Confidence 4555554444 567777776666555555553 466667777889999999999997543211 10 0 01123589
Q ss_pred EEeEEEECCCCC-------------------------------CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 001980 747 LRHVDFAYPSRP-------------------------------DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 747 f~~vsf~Y~~~~-------------------------------~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~r 795 (987)
++|++|.|+... ..++|+|+||+|++||.++|+||+|||||||+++|+|
T Consensus 395 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G 474 (1490)
T TIGR01271 395 MVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMG 474 (1490)
T ss_pred EecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 999999995310 1358999999999999999999999999999999999
Q ss_pred cCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCC
Q 001980 796 FYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKT 875 (987)
Q Consensus 796 l~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt 875 (987)
+++|++|+|.+|| +|+||||+|.+|++||+|||.++.+ +++++..++++.+++.+.+..+|+|.+|
T Consensus 475 ~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t 540 (1490)
T TIGR01271 475 ELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKT 540 (1490)
T ss_pred CCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhccccccc
Confidence 9999999999998 4999999999999999999998754 5666777888999999999999999999
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHcCCCeEEEEecCchhhhccCEEEEE
Q 001980 876 PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEA-LERLMRGRTTVLVAHRLSTIRGVDCIGVV 954 (987)
Q Consensus 876 ~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~-l~~~~~~~TvI~IaHRl~ti~~~D~Iivl 954 (987)
.+|++|.+|||||||||+||||++++|+|+|||||||+||+++++.|.+. +.+..+++|+|+|||+++.+..||+|++|
T Consensus 541 ~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l 620 (1490)
T TIGR01271 541 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLL 620 (1490)
T ss_pred cccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999999985 66777899999999999999999999999
Q ss_pred eCCEEEEecChhHHhcCCCchHHHHH
Q 001980 955 QDGRIVEQGSHSELVSRPDGAYSRLL 980 (987)
Q Consensus 955 ~~G~ive~Gt~~eLl~~~~g~f~~l~ 980 (987)
++|+|++.|+|+++.+. ++.|.+++
T Consensus 621 ~~g~i~~~g~~~~l~~~-~~~~~~~~ 645 (1490)
T TIGR01271 621 HEGVCYFYGTFSELQAK-RPDFSSLL 645 (1490)
T ss_pred ECCEEEEEcCHHHHHhc-ChHHHHHH
Confidence 99999999999999875 56676665
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-57 Score=554.68 Aligned_cols=479 Identities=23% Similarity=0.301 Sum_probs=368.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 483 QHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFI 562 (987)
Q Consensus 483 ~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 562 (987)
..+...+.+.++-..+-..+|++.++.+-.-- ..+..|+++|-++.|++.+++.... +..+....+.+++++..++.
T Consensus 262 ~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~--~~~t~G~ivNlms~D~~ri~~~~~~-~h~~w~~Plqi~~~l~lLy~ 338 (1381)
T KOG0054|consen 262 YFFVSFRVGMRLRSALISAIYRKALRLSNSAR--GETTVGEIVNLMSVDAQRLSDAACF-LHLLWSAPLQIILALYLLYG 338 (1381)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhcCchhhc--cCCCcchhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34445666777777777788888888765533 2468999999999999999987643 34455555555555555544
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHH
Q 001980 563 VEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTL 642 (987)
Q Consensus 563 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~ 642 (987)
.--..+++.++++.+++.+..+..+..+++..+......+....++|.++|+++||.|+||+.|.++..+.-++..+...
T Consensus 339 ~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lr 418 (1381)
T KOG0054|consen 339 LLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLR 418 (1381)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444555555555566666666677788899999999999999999999988766554444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 643 RRSLTAGILFGISQFALHASEALILWYGVHL-VGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFST 721 (987)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~ 721 (987)
+.....++...+......+..++ .++.+. ...+..+....++++.+....-.|+..+-.....+.++..+++|+.++
T Consensus 419 k~~~~~~~~~~~~~~~p~lv~~~--tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~f 496 (1381)
T KOG0054|consen 419 KSAYLSALNSFLNFFSPVLVSVV--TFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEF 496 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333322 233333 345566776777777777777777777777777888899999999999
Q ss_pred hcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC
Q 001980 722 LDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 801 (987)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~ 801 (987)
+..+... +......+..+.+-.|+++|.+|++.+..+.+.|+||||+|++|+.+||||++|||||||+.+|+|-.+..+
T Consensus 497 l~~~e~~-~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~s 575 (1381)
T KOG0054|consen 497 LLSEELD-PDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLS 575 (1381)
T ss_pred hcCcccC-ccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccccc
Confidence 8754322 111111122233446999999999975333459999999999999999999999999999999999999999
Q ss_pred ceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCC
Q 001980 802 GKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERG 881 (987)
Q Consensus 802 G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G 881 (987)
|++.++|. ++||||+|.+|+|||||||.||.| ++++.-.++++.|+|...++.||.|-.|+|||+|
T Consensus 576 G~v~v~gs-------------iaYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErG 641 (1381)
T KOG0054|consen 576 GSVAVNGS-------------VAYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERG 641 (1381)
T ss_pred ceEEEcCe-------------EEEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCc
Confidence 99999984 999999999999999999998875 8888899999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEE
Q 001980 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEA-LERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIV 960 (987)
Q Consensus 882 ~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~-l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~iv 960 (987)
.||||||||||+||||++++++|.+||.|-||+|+++-+.|.+. |+...+++|+|.|||.++.+.++|.|+||++|+|+
T Consensus 642 inLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~ 721 (1381)
T KOG0054|consen 642 INLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIV 721 (1381)
T ss_pred cCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEe
Confidence 99999999999999999999999999999999999998877655 55566899999999999999999999999999999
Q ss_pred EecChhHHhcCCCchHHHHHHh
Q 001980 961 EQGSHSELVSRPDGAYSRLLQL 982 (987)
Q Consensus 961 e~Gt~~eLl~~~~g~f~~l~~~ 982 (987)
|.|+|+||++. ++.|.+|.+.
T Consensus 722 ~~Gty~el~~~-~~~~~~l~~~ 742 (1381)
T KOG0054|consen 722 ESGTYEELLKS-GGDFAELAHE 742 (1381)
T ss_pred cccCHHHHHhc-chhHHHHhhc
Confidence 99999999976 7888888544
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-59 Score=562.98 Aligned_cols=326 Identities=29% Similarity=0.484 Sum_probs=290.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 001980 5 LGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSA-IVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSI 83 (987)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~ 83 (987)
...++..++..++.++++|+|++++ +|.+++|.+++++.+. +....++..+...+..+++++.+++|+.++++.+++.
T Consensus 246 ~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~ 324 (574)
T PRK11160 246 LSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEV 324 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3445666677777778889999884 7889999887765544 3345678888889999999999999999999876542
Q ss_pred CCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 001980 84 IQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163 (987)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g 163 (987)
.... . .......+.|+++||+|+|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||
T Consensus 325 ~~~~-~-~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g 401 (574)
T PRK11160 325 TFPT-T-STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNG 401 (574)
T ss_pred CCCc-c-cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 2111 1 1111234569999999999753 24689999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHH
Q 001980 164 VDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ 243 (987)
Q Consensus 164 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 243 (987)
+++++++.+++|++|+||+|+|++|++||+|||.++.|+.++++++++++.++++++++. |+|+||.+|++|.+|||||
T Consensus 402 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGq 480 (574)
T PRK11160 402 QPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGE 480 (574)
T ss_pred EEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHH
Confidence 999999999999999999999999999999999999988899999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHH
Q 001980 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 244 kqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 323 (987)
|||++||||++++|+++|||||||+||+++++.+.+.+.++.+++|+|+||||++.++.||+|++|++|++++.|+|+|+
T Consensus 481 rqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l 560 (574)
T PRK11160 481 QRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQEL 560 (574)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHH
Q 001980 324 IAKAGAYASLIR 335 (987)
Q Consensus 324 ~~~~~~~~~~~~ 335 (987)
+++++.|+++++
T Consensus 561 ~~~~g~y~~l~~ 572 (574)
T PRK11160 561 LAQQGRYYQLKQ 572 (574)
T ss_pred HhcCcHHHHHHh
Confidence 999999998864
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-59 Score=563.99 Aligned_cols=311 Identities=32% Similarity=0.498 Sum_probs=282.3
Q ss_pred HHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCccE
Q 001980 21 VFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNI 100 (987)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i 100 (987)
++++++. +..|.+++|.+++++.+......|+..+...+..+.+++.+++|+.++++.+++... . . ..+...+.|
T Consensus 267 ~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~-~-~--~~~~~~~~i 341 (592)
T PRK10790 267 LLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG-N-D--DRPLQSGRI 341 (592)
T ss_pred HHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC-C-C--ccCCCCCeE
Confidence 3334444 578999999999888888888899999999999999999999999999976543111 1 1 111223569
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 001980 101 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180 (987)
Q Consensus 101 ~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 180 (987)
+++|++|+|+++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.|+++++.+++|++|+|
T Consensus 342 ~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~ 419 (592)
T PRK10790 342 DIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAM 419 (592)
T ss_pred EEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEE
Confidence 999999999742 459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 001980 181 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKIL 260 (987)
Q Consensus 181 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~il 260 (987)
|||+|++|++||+|||.++. +.++++++++++.++++++++.+|+|++|.+|++|.+|||||||||+|||||+++|+|+
T Consensus 420 v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~il 498 (592)
T PRK10790 420 VQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQIL 498 (592)
T ss_pred EccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999997 57889999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHHHHHHh
Q 001980 261 LLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEM 339 (987)
Q Consensus 261 llDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 339 (987)
|||||||+||+++++.+.+.|+++.+++|+|+||||++.++.+|+|++|++|++++.|+|+|++++++.|+++++.+..
T Consensus 499 llDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~~~ 577 (592)
T PRK10790 499 ILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQLA 577 (592)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHHHHHhh
Confidence 9999999999999999999999987789999999999999999999999999999999999999999999999876543
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=560.09 Aligned_cols=328 Identities=40% Similarity=0.616 Sum_probs=296.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 001980 7 LGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQD 86 (987)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 86 (987)
.++..++..++.++++++|++++.+|.+|+|.+++++.++.....|+..+...+..+..++.+++|+.++++.+++.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~- 321 (588)
T PRK13657 243 SVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRD- 321 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-
Confidence 3445566667777888999999999999999999988888888899999999999999999999999999876543211
Q ss_pred CCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 001980 87 PTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI 166 (987)
Q Consensus 87 ~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~ 166 (987)
.......+...+.|+++|++|+|+++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++
T Consensus 322 ~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i 399 (588)
T PRK13657 322 PPGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDI 399 (588)
T ss_pred CCCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEh
Confidence 11111111223469999999999743 3589999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHH
Q 001980 167 KTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 167 ~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqR 246 (987)
.+++.+.+|++|+||||+|++|++|++|||+++.|+.++++++.+++.+++++++..+|+|++|.+|++|.+||||||||
T Consensus 400 ~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QR 479 (588)
T PRK13657 400 RTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQR 479 (588)
T ss_pred hhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
++|||||+++|+|+|||||||+||+++++.+++.|.++.+++|+|+||||++.++.+|+|++|++|++++.|+|+++++.
T Consensus 480 ialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~ 559 (588)
T PRK13657 480 LAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR 559 (588)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC
Confidence 99999999999999999999999999999999999988779999999999999999999999999999999999999998
Q ss_pred hhhHHHHHHHH
Q 001980 327 AGAYASLIRFQ 337 (987)
Q Consensus 327 ~~~~~~~~~~~ 337 (987)
.+.|.+++..+
T Consensus 560 ~~~y~~l~~~~ 570 (588)
T PRK13657 560 GGRFAALLRAQ 570 (588)
T ss_pred CChHHHHHHHh
Confidence 89999988754
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=559.03 Aligned_cols=327 Identities=45% Similarity=0.669 Sum_probs=298.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001980 6 GLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ 85 (987)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 85 (987)
..++..++..+..++++++|++++..|.+|+|.+++++.++.....|+..+...+..+.+++.+++|+.++++.+++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 319 (571)
T TIGR02203 240 SSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT 319 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 45566667777788889999999999999999999999888889999999999999999999999999999986554221
Q ss_pred CCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 001980 86 DPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 165 (987)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~ 165 (987)
.. .......+.|+++||+|+|++. +.++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||++
T Consensus 320 ~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~ 395 (571)
T TIGR02203 320 GT---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD 395 (571)
T ss_pred CC---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEe
Confidence 11 1111223569999999999754 3468999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCC-CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 166 IKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP-EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 166 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
+++++.+++|++|+||||+|++|++|++|||.++.+ +.++++++++++.+++++++..+|+|+||.+|++|.+||||||
T Consensus 396 i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqr 475 (571)
T TIGR02203 396 LADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQR 475 (571)
T ss_pred HHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHH
Confidence 999999999999999999999999999999999986 7889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
|||+||||++++|+|+|||||||+||+++++.+.+.|.++.+++|+|+||||++.+..||+|++|++|++++.|+|++++
T Consensus 476 QRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 476 QRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL 555 (571)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHH
Q 001980 325 AKAGAYASLIRF 336 (987)
Q Consensus 325 ~~~~~~~~~~~~ 336 (987)
+.++.|++++..
T Consensus 556 ~~~~~~~~~~~~ 567 (571)
T TIGR02203 556 ARNGLYAQLHNM 567 (571)
T ss_pred HcCCHHHHHHHH
Confidence 888888876653
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-58 Score=567.66 Aligned_cols=328 Identities=37% Similarity=0.598 Sum_probs=299.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001980 6 GLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ 85 (987)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 85 (987)
...+..++..++.++++|+|++++..|.+|+|.++++..+......|+..+...+..+++++.+++|+.++++.+++...
T Consensus 364 ~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 443 (694)
T TIGR01846 364 AGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS 443 (694)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence 34555666777888889999999999999999999988888888899999999999999999999999999987654221
Q ss_pred CCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 001980 86 DPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 165 (987)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~ 165 (987)
. .....+...+.|+++||+|+|++. +.++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||++
T Consensus 444 ~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~ 520 (694)
T TIGR01846 444 A--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVD 520 (694)
T ss_pred C--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe
Confidence 1 111112234579999999999743 3458999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 166 IKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 166 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
+++++.+++|++|+||+|+|++|++||+|||.++.|+.++++++++|+.+++++++..+|+|++|.+|++|.+|||||||
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~q 600 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQ 600 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHH
Confidence 99999999999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|++|||||+++|+|+|||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|++++.|+|+++++
T Consensus 601 ri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 601 RIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999878999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHH
Q 001980 326 KAGAYASLIRF 336 (987)
Q Consensus 326 ~~~~~~~~~~~ 336 (987)
+++.|++++..
T Consensus 681 ~~~~y~~l~~~ 691 (694)
T TIGR01846 681 LQGLYARLWQQ 691 (694)
T ss_pred cCChHHHHHHh
Confidence 99999998764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-58 Score=556.04 Aligned_cols=328 Identities=46% Similarity=0.727 Sum_probs=293.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 001980 9 CTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPT 88 (987)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~ 88 (987)
+..++..++.++++++|++++..|.+++|.++++..+......|+..++..+..+.+++.+++|+.++++.+++.+....
T Consensus 247 ~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~ 326 (576)
T TIGR02204 247 IVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAH 326 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCC
Confidence 33444556666777889999999999999998888888888899999999999999999999999999986543211111
Q ss_pred CCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC
Q 001980 89 NGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT 168 (987)
Q Consensus 89 ~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~ 168 (987)
......+..+.|+++||+|+|+++.+.++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++++
T Consensus 327 ~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~ 406 (576)
T TIGR02204 327 PKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQ 406 (576)
T ss_pred CccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHh
Confidence 11111112346999999999985433569999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHH
Q 001980 169 LQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIA 248 (987)
Q Consensus 169 ~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRia 248 (987)
++..++|++|+|+||+|++|++||+|||.++.|+.++++++++++.+++.++++.+|+|++|.+|++|.+||||||||++
T Consensus 407 ~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~ 486 (576)
T TIGR02204 407 LDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIA 486 (576)
T ss_pred cCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHH
Confidence 99999999999999999999999999999998877889999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhh
Q 001980 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAG 328 (987)
Q Consensus 249 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 328 (987)
||||++++|+++|||||||+||+++++.+++.++++.+++|+|+||||++.++.+|+|++|++|++++.|+++++.++++
T Consensus 487 laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~ 566 (576)
T TIGR02204 487 IARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGG 566 (576)
T ss_pred HHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCC
Confidence 99999999999999999999999999999999999878999999999999999999999999999999999999999888
Q ss_pred hHHHHHHH
Q 001980 329 AYASLIRF 336 (987)
Q Consensus 329 ~~~~~~~~ 336 (987)
.|++++..
T Consensus 567 ~~~~l~~~ 574 (576)
T TIGR02204 567 LYARLARL 574 (576)
T ss_pred hHHHHHhh
Confidence 88887643
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-58 Score=550.97 Aligned_cols=327 Identities=32% Similarity=0.518 Sum_probs=296.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 001980 8 GCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDP 87 (987)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 87 (987)
++...+..++.++++++|++++.+|.+|+|.+++++.+......|+..++..+..+..++.+.+|+.++++.+++.....
T Consensus 225 ~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~ 304 (569)
T PRK10789 225 PTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS 304 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC
Confidence 34445555667778899999999999999999998888888889999999999999999999999999998754321111
Q ss_pred CCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC
Q 001980 88 TNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK 167 (987)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~ 167 (987)
...+...+.|+++|++|+|+.. +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+||+++.
T Consensus 305 ---~~~~~~~~~I~~~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~ 380 (569)
T PRK10789 305 ---EPVPEGRGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLT 380 (569)
T ss_pred ---CCCCCCCCcEEEEEEEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHh
Confidence 1112223569999999999753 346899999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHH
Q 001980 168 TLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247 (987)
Q Consensus 168 ~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRi 247 (987)
+++..++|++|+|++|+|++|++|++|||.++.++.++++++++++.+++++++..+|+|++|.+|++|.+||||||||+
T Consensus 381 ~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi 460 (569)
T PRK10789 381 KLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRI 460 (569)
T ss_pred hCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHH
Confidence 99999999999999999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhh
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
+||||++++|+++|||||||+||+++++.+.+.|+++.+++|+|+||||++.++.+|+|++|++|++++.|+|+++++++
T Consensus 461 ~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 540 (569)
T PRK10789 461 SIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQS 540 (569)
T ss_pred HHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcC
Confidence 99999999999999999999999999999999999887899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHH
Q 001980 328 GAYASLIRFQE 338 (987)
Q Consensus 328 ~~~~~~~~~~~ 338 (987)
+.|++++..++
T Consensus 541 ~~y~~l~~~~~ 551 (569)
T PRK10789 541 GWYRDMYRYQQ 551 (569)
T ss_pred ChHHHHHHHhh
Confidence 99999887654
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-55 Score=567.54 Aligned_cols=544 Identities=19% Similarity=0.206 Sum_probs=406.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 418 EWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTR 497 (987)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (987)
.++.++..++..++..++....++++..++..+...+ ........+++.++++.++..++.....+...+.+.++...
T Consensus 242 ~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~--~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~ 319 (1560)
T PTZ00243 242 LPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADN--ATWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSA 319 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666666666666766665432111 11000111222222333334444444556667778888888
Q ss_pred HHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001980 498 VRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPL 577 (987)
Q Consensus 498 l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl 577 (987)
+...+|+++++.+...+..++...|+++|.++.|++.+...+. .+..++...+.+++++++++....+.+++.++++++
T Consensus 320 L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~-~~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v 398 (1560)
T PTZ00243 320 LNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQ-YCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLV 398 (1560)
T ss_pred HHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999998877765556899999999999999999984 455666666666666666665544455555555555
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001980 578 LVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQF 657 (987)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (987)
++.+..+..+++....++...........+.|.++|+++||.+++|+.|.+++.+.-+...+...+......+...+...
T Consensus 399 ~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~ 478 (1560)
T PTZ00243 399 TLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNA 478 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555566666667777889999999999999999999999999887665555544444444443333333
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-----CCCC
Q 001980 658 ALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRI-----DPDD 732 (987)
Q Consensus 658 ~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~-----~~~~ 732 (987)
...+..+ ..++.+.+..+.++++.+++++.++.....|+..+...+..+.++..+++|+.++++.++.. +..+
T Consensus 479 ~p~l~~~--~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~ 556 (1560)
T PTZ00243 479 TPTLMIA--VVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEE 556 (1560)
T ss_pred HHHHHHH--HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchh
Confidence 3322222 23456667788999999999999988888999988899999999999999999998754310 0000
Q ss_pred ---------C--C----------------CCC-------------------------CCCccccEEEEeEEEECCCC---
Q 001980 733 ---------P--D----------------AEP-------------------------VETIRGEIELRHVDFAYPSR--- 757 (987)
Q Consensus 733 ---------~--~----------------~~~-------------------------~~~~~g~I~f~~vsf~Y~~~--- 757 (987)
+ . ..+ .....+.+.++|++|.++..
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1560)
T PTZ00243 557 YWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASR 636 (1560)
T ss_pred hcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccc
Confidence 0 0 000 00012357788887765310
Q ss_pred ----------------------------------CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCce
Q 001980 758 ----------------------------------PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803 (987)
Q Consensus 758 ----------------------------------~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~ 803 (987)
.+.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~ 716 (1560)
T PTZ00243 637 HIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGR 716 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcE
Confidence 1235899999999999999999999999999999999999999999
Q ss_pred EEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCC
Q 001980 804 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ 883 (987)
Q Consensus 804 I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~ 883 (987)
|.++ ++|+|+||+|.+|++||+|||.++.+ .++++..++++.+++.+.++.+|+|++|.++++|.+
T Consensus 717 i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~ 782 (1560)
T PTZ00243 717 VWAE-------------RSIAYVPQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVN 782 (1560)
T ss_pred EEEC-------------CeEEEEeCCCccCCCcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCC
Confidence 9863 57999999999999999999998754 455678888999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEe
Q 001980 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEA-LERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 962 (987)
Q Consensus 884 LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~-l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~ 962 (987)
||||||||++||||++++|+|+|||||||+||+.+.+.+.+. +....+++|+|+|||+++.+..||+|++|++|++++.
T Consensus 783 LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~ 862 (1560)
T PTZ00243 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFS 862 (1560)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999998877654 4445578999999999999999999999999999999
Q ss_pred cChhHHhcCCCchHHHHHHh
Q 001980 963 GSHSELVSRPDGAYSRLLQL 982 (987)
Q Consensus 963 Gt~~eLl~~~~g~f~~l~~~ 982 (987)
|+|+++++. +.|.++...
T Consensus 863 G~~~~l~~~--~~~~~~~~~ 880 (1560)
T PTZ00243 863 GSSADFMRT--SLYATLAAE 880 (1560)
T ss_pred cCHHHHHhC--hHHHHHHHh
Confidence 999999864 568877654
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-58 Score=489.26 Aligned_cols=322 Identities=41% Similarity=0.621 Sum_probs=293.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 001980 12 GIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGR 91 (987)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~ 91 (987)
.+...+...+...+..-+..|.+|.|++...-.++.....|+..+......+.+++.-+++.++.++.+.+....+....
T Consensus 175 ~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~ 254 (497)
T COG5265 175 AIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPP 254 (497)
T ss_pred HHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCcc
Confidence 33444445555667777889999999988888888888899999999999999999999999999987665433221111
Q ss_pred cCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH
Q 001980 92 CLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL 171 (987)
Q Consensus 92 ~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~ 171 (987)
..+...+.+.|+||+|.|.. .+++|+++||++++|+.+|||||||+||||++++|.++|++++|.|.+||+|+++...
T Consensus 255 L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq 332 (497)
T COG5265 255 LWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQ 332 (497)
T ss_pred ccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHH
Confidence 11134567999999999974 4679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
+.+|+.||.|||+..||++|+..||.+|.|..+.+++..+++.+.++++++.+|+|++|.+||+|-.||||||||+||||
T Consensus 333 ~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar 412 (497)
T COG5265 333 QSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIAR 412 (497)
T ss_pred HHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHH
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYA 331 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 331 (987)
+++++|+|++|||.||+||.++++.++..|++..+|+|.++|.||++++-.||.|+||++|+|+|.|+|++|++.+|.|+
T Consensus 413 ~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g~ya 492 (497)
T COG5265 413 TILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYA 492 (497)
T ss_pred HHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 001980 332 SLIR 335 (987)
Q Consensus 332 ~~~~ 335 (987)
+++.
T Consensus 493 ~mw~ 496 (497)
T COG5265 493 EMWR 496 (497)
T ss_pred HHhc
Confidence 8873
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-58 Score=499.38 Aligned_cols=316 Identities=31% Similarity=0.443 Sum_probs=290.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001980 6 GLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ 85 (987)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 85 (987)
..+++-.+-++....++..|+|+++.|++|+|.+++.-..+.-...|+-.....|.++..++.|++|+.++|...|...
T Consensus 245 ~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~- 323 (580)
T COG4618 245 FGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA- 323 (580)
T ss_pred HHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-
Confidence 4455667777888899999999999999999998887666666667999999999999999999999999998765421
Q ss_pred CCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 001980 86 DPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 165 (987)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~ 165 (987)
.....+.+++.+.++++++.-|+. ++++++++||++++||.++||||||||||||.|+|.|.++|.+|.|++||.+
T Consensus 324 ---~~m~LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~ 399 (580)
T COG4618 324 ---ERMPLPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGAD 399 (580)
T ss_pred ---CCCCCCCCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchh
Confidence 223445667889999999987654 5789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 166 IKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 166 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
+++++.+.+-++|||+||+-.||+|||+|||.-..++.+.+++.++++.++.||.|..+|+||||.+|+.|..|||||||
T Consensus 400 l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQ 479 (580)
T COG4618 400 LRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQ 479 (580)
T ss_pred hhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHH
Confidence 99999999999999999999999999999998766778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
||+||||||.||.+++||||-|+||.+.|..+.+.|...+ +|.|+|+||||++.+..+|+|++|++|++...|+.+|++
T Consensus 480 RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVL 559 (580)
T COG4618 480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVL 559 (580)
T ss_pred HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999886 599999999999999999999999999999999999987
Q ss_pred Hh
Q 001980 325 AK 326 (987)
Q Consensus 325 ~~ 326 (987)
++
T Consensus 560 a~ 561 (580)
T COG4618 560 AK 561 (580)
T ss_pred HH
Confidence 64
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-57 Score=541.08 Aligned_cols=328 Identities=39% Similarity=0.542 Sum_probs=295.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 001980 7 LGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQD 86 (987)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 86 (987)
..+..++..++.++++++|++++.+|.+++|.+++++.++.....|+..+...+..+..++.+.+|+.++++.+++....
T Consensus 243 ~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 322 (585)
T TIGR01192 243 SGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEP 322 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCC
Confidence 34455566677788889999999999999999998888888888899999999999999999999999999865432111
Q ss_pred CCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 001980 87 PTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI 166 (987)
Q Consensus 87 ~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~ 166 (987)
. .....+...+.++++|++|+|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++
T Consensus 323 ~-~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~ 399 (585)
T TIGR01192 323 A-DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDI 399 (585)
T ss_pred c-cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEh
Confidence 1 111111223469999999999743 3489999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHH
Q 001980 167 KTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 167 ~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqR 246 (987)
.+++.+++|++++||+|+|++|++|++|||.++.++.++++++++++.+++++++..+|+|++|.+|++|.+||||||||
T Consensus 400 ~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qr 479 (585)
T TIGR01192 400 NTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQR 479 (585)
T ss_pred hhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999988778899999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
++|||||+++|+++|||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|++++.|+|++++++
T Consensus 480 l~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 480 LAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC
Confidence 99999999999999999999999999999999999988789999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHH
Q 001980 327 AGAYASLIRFQ 337 (987)
Q Consensus 327 ~~~~~~~~~~~ 337 (987)
++.|++++..+
T Consensus 560 ~~~y~~l~~~~ 570 (585)
T TIGR01192 560 DGRFYKLLRRS 570 (585)
T ss_pred CChHHHHHHhC
Confidence 99999888654
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-57 Score=541.90 Aligned_cols=289 Identities=32% Similarity=0.493 Sum_probs=259.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001980 6 GLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ 85 (987)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 85 (987)
..++..++..++.++++|+|++++.+|.+++|.+++++++......|+..+...+..+.+++.+.+|+.++++.+++...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 319 (529)
T TIGR02868 240 GAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPE 319 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCC
Confidence 34556667777778888999999999999999999888888888899999999999999999999999999987654221
Q ss_pred CCCC-CCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE
Q 001980 86 DPTN-GRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV 164 (987)
Q Consensus 86 ~~~~-~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~ 164 (987)
.... ........+.|+++||+|+|+++ .++|+|+||++++||+++||||||||||||+++|+|+++|++|+|.+||+
T Consensus 320 ~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~ 397 (529)
T TIGR02868 320 GVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGV 397 (529)
T ss_pred CCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 1110 00111123469999999999753 35899999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 165 DIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 165 ~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
|++++ .+++|++|+||||+|++|++||+|||.+|.|+.++++++++++.+++++++..+|+|+||.+||+|.+||||||
T Consensus 398 ~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQr 476 (529)
T TIGR02868 398 SVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGER 476 (529)
T ss_pred EhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHH
Confidence 99999 99999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCC
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRL 297 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~ 297 (987)
|||+|||||+++|+|+|||||||+||+++++.+++.+.++.+++|+|+||||+
T Consensus 477 QRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 477 QRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999888899999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=535.32 Aligned_cols=314 Identities=32% Similarity=0.450 Sum_probs=283.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 001980 7 LGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQD 86 (987)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 86 (987)
.++..++..++.++++++|++++.+|.+|+|.+++++.++.....|+..+...+..+.+++.+.+|+.++++.+++...
T Consensus 228 ~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~- 306 (544)
T TIGR01842 228 SNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP- 306 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC-
Confidence 3444555566677788999999999999999999988888888899999999999999999999999999976543211
Q ss_pred CCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 001980 87 PTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI 166 (987)
Q Consensus 87 ~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~ 166 (987)
. ...+...+.++++|++|+|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++
T Consensus 307 ~---~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i 382 (544)
T TIGR01842 307 A---MPLPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADL 382 (544)
T ss_pred C---CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeh
Confidence 1 1112223469999999999743 34689999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHH
Q 001980 167 KTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 167 ~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqR 246 (987)
.+++.+++|++++||||+|++|++|++|||.++.++.++++++++++.++++++++.+|+|++|.+|++|.+||||||||
T Consensus 383 ~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qr 462 (544)
T TIGR01842 383 KQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQR 462 (544)
T ss_pred hhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHH
Confidence 99999999999999999999999999999998777678899999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHH
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
++||||++++|+++|||||||+||+++++.+.+.+.++. +++|+|++|||++.++.||+|++|++|++++.|+|+++++
T Consensus 463 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 463 IALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999999999999999885 5899999999999988899999999999999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-55 Score=522.22 Aligned_cols=296 Identities=36% Similarity=0.515 Sum_probs=263.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 001980 10 TYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTN 89 (987)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~ 89 (987)
..++..+..+++++++++.+..|.+++|.+++++.+......|+..+...+..+.+++.+++|+.++++.+++... ..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~-~~- 311 (529)
T TIGR02857 234 LELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG-KA- 311 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-Cc-
Confidence 3344445555555667777779999999998888888788889999999999999999999999999975432111 11
Q ss_pred CCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC
Q 001980 90 GRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL 169 (987)
Q Consensus 90 ~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~ 169 (987)
.......+.|+++||+|+|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+|++++
T Consensus 312 -~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~ 389 (529)
T TIGR02857 312 -PVTAAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADA 389 (529)
T ss_pred -CCCCCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhC
Confidence 1111122469999999999854 24689999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 170 QLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 170 ~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
+.+++|++|+||+|+|++|++||+|||.++.++.++++++++++.++++++++.+|+|+||.+|++|.+||||||||++|
T Consensus 390 ~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~l 469 (529)
T TIGR02857 390 DADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLAL 469 (529)
T ss_pred CHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHH
Confidence 99999999999999999999999999999988788899999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEE
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVI 309 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l 309 (987)
|||++++|+++|||||||+||+++++.+.+.+.++.+++|+|+||||++.++.||+|++|
T Consensus 470 aRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 470 ARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999999999987899999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-55 Score=473.93 Aligned_cols=237 Identities=23% Similarity=0.424 Sum_probs=223.8
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
|.|+|+|++++|++. +.++|+|+||+|++||++||+|+||||||||+++|+|+++ .+|+|+|||+++..++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 579999999999643 3469999999999999999999999999999999999998 78999999999999999999999
Q ss_pred cEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 001980 823 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 902 (987)
Q Consensus 823 i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p 902 (987)
|+||||+|.+|++|+++|+++.. ..++++++++++.+++.+++..+|+++++.++++|.+||||||||+||||||+++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999997543 36789999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHh
Q 001980 903 AILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 982 (987)
Q Consensus 903 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~ 982 (987)
+||||||||++||+.+++.+++.|++.++++|+|+||||++++..||||+||++|+++|.|+|++|+++ .+.|++++..
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 236 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISP 236 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhh
Confidence 999999999999999999999999998889999999999999999999999999999999999999996 6889998865
Q ss_pred h
Q 001980 983 Q 983 (987)
Q Consensus 983 q 983 (987)
.
T Consensus 237 ~ 237 (275)
T cd03289 237 S 237 (275)
T ss_pred c
Confidence 4
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-53 Score=413.94 Aligned_cols=218 Identities=33% Similarity=0.545 Sum_probs=189.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC-CCHHHHhcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT-LQLRWLRDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~-~~~~~~~~~ 177 (987)
.|+++|++++|++ ..+|+|||++|++||.++|+|||||||||||++|.|+-+|++|+|.++|.++.. .+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 3899999999984 349999999999999999999999999999999999999999999999987743 377889999
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPE---ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
+|+|+|+..||+- ||.||+.++.-. .+.++..+. +.+.++.. |+.......+.+|||||||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~-----A~~lL~~V--GL~~ka~~yP~qLSGGQqQRVAIARAL 151 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREK-----ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 151 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHH-----HHHHHHHc--CchhhhhhCccccCcHHHHHHHHHHHH
Confidence 9999999999976 999999987421 122222211 12334443 666666777789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+.+|+++|+|||||||||+....+.+.++++. .|.|.|+|||.+.+++. ||||+.|++|+|+++|+++++..+
T Consensus 152 aM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 152 AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred cCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999986 58999999999999998 799999999999999999998765
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-50 Score=480.18 Aligned_cols=288 Identities=21% Similarity=0.288 Sum_probs=246.6
Q ss_pred HHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCC-CC-CCC---
Q 001980 19 ALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPS--IIQD-PT-NGR--- 91 (987)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~--~~~~-~~-~~~--- 91 (987)
++++|++++. +.++.|.+++++.+......|+..+...+..++.++.+++|+.++++.+++ .... +. ...
T Consensus 253 ~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~ 329 (555)
T TIGR01194 253 GCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLL 329 (555)
T ss_pred HHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccc
Confidence 3344444433 689999999988888888899999999999999999999999999863211 1000 00 000
Q ss_pred cCCCCCccEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC
Q 001980 92 CLDEVNGNIEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL 169 (987)
Q Consensus 92 ~~~~~~~~i~~~~~~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~ 169 (987)
........|+++||+|+|++.+ ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.+++++
T Consensus 330 ~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~ 409 (555)
T TIGR01194 330 AHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSAD 409 (555)
T ss_pred ccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC
Confidence 0111235699999999997532 23589999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 170 QLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 170 ~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
+..++|++++||+|+|++|++|+++|+ .++.++++++++++.+++++++..+|+|++|. .+||||||||++|
T Consensus 410 ~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlal 481 (555)
T TIGR01194 410 SRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLAL 481 (555)
T ss_pred CHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHH
Confidence 999999999999999999999999995 35567788999999999999999999999994 6899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHH-hh-hCCCeEEEEcCCCCccccCCEEEEEeCCEEEEe
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALD-RL-MVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVET 317 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~-~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~ 317 (987)
|||++++|+|+|||||||+||+++++.+.+.+. .+ .+++|+|+||||++.++.||+|++|++|++++.
T Consensus 482 aRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 482 ICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999988764 34 358999999999999999999999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=449.31 Aligned_cols=228 Identities=32% Similarity=0.544 Sum_probs=202.4
Q ss_pred CCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCC-
Q 001980 739 ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIR- 812 (987)
Q Consensus 739 ~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~- 812 (987)
|+..+.|+|+|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.|||+|+.
T Consensus 75 ~~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 4566889999999999643 3469999999999999999999999999999999999997 57999999999997
Q ss_pred -CCCHHHHhcccEEEccccccccccHHHHhccCCC--CCCHHHH-----HHHHHHcCchhhHhhCCCcCCCccCCCCCCC
Q 001980 813 -RLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE--GATEAEV-----VEAARAANVHGFVSALPNAYKTPVGERGVQL 884 (987)
Q Consensus 813 -~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~sd~ei-----~~al~~a~l~~~i~~lp~gldt~vge~G~~L 884 (987)
.+++..+|++++||||+|.+|++|+++||.++.. ..++++. .++++.++++ +++++.++++|.+|
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-------~~l~~~~~~~~~~L 226 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALW-------DEVKDDLDKAGNAL 226 (329)
T ss_pred cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCc-------chhhhhhhCCcccC
Confidence 4566789999999999999999999999986532 2445544 4455666653 45567889999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001980 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 885 SgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~G 963 (987)
|||||||+|||||++++|+|||||||||+||+++.+.+++.|++.++++|+|+|||+++++.+ ||||+||++|+|+|.|
T Consensus 227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999999889999999999999988 9999999999999999
Q ss_pred ChhHHhcCCCc
Q 001980 964 SHSELVSRPDG 974 (987)
Q Consensus 964 t~~eLl~~~~g 974 (987)
+|++++..+..
T Consensus 307 ~~~~l~~~~~~ 317 (329)
T PRK14257 307 ETKTIFIHPKN 317 (329)
T ss_pred CHHHHhcCCCc
Confidence 99999887553
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-50 Score=436.25 Aligned_cols=194 Identities=30% Similarity=0.424 Sum_probs=164.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
-|.|+||+|.|++.+ ..+++++|-|.++++||+|||||+|||||++++.+...|+.|.|.-.-. -++
T Consensus 389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKL 455 (614)
T ss_pred eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccc
Confidence 599999999997654 5899999999999999999999999999999999999999999866532 223
Q ss_pred EEEccc---cccccccHHHHhccCCCC-CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 824 GLVQQE---PALFAASIFDNIAYGKEG-ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 824 ~~VpQd---p~lF~gTIreNL~~~~~~-~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
++.-|. ...++-|.-+++..-.++ -..+++...+.+.|+..-.+ +.+++ +||+|||.||+.||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q------~~p~~----~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQ------VVPMS----QLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccc------ccchh----hcccccchhHHHHHHHh
Confidence 344443 345677888888765554 66788889999999975433 34443 69999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEe
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQ 962 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~ 962 (987)
++|.||||||||++||.++-....++|.++ ..+||+|+|+...|.. +++|.+.++|.+...
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~ 587 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKW 587 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeec
Confidence 999999999999999999999999999986 4599999999999987 599999999988764
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=397.47 Aligned_cols=218 Identities=31% Similarity=0.565 Sum_probs=194.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC-CCCHHHHhcc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR-RLNLKSLRLK 822 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~-~i~l~~lR~~ 822 (987)
-|+++||+.+|. +..||+|||++|++||+++|+||||||||||+++|.++-+|++|+|.|||.++. ..++..+|++
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 489999999995 346999999999999999999999999999999999999999999999998773 3378899999
Q ss_pred cEEEcccccccc-ccHHHHhccCCC---CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 823 IGLVQQEPALFA-ASIFDNIAYGKE---GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 823 i~~VpQdp~lF~-gTIreNL~~~~~---~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
+|+|+|+..||. -|+.||+.++.- ..+. +.-.+.|+++++.+..+.-| ..|||||+||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 999999999996 699999987631 1222 23456778899988887776 4699999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCC
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRP 972 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~ 972 (987)
||||.-+|+++++|||||||||+.-..+.+.++++. .|.|+|+|||.+...++ +|||+.||+|+|+|+|+|+++..+|
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999999987 57899999999999988 5999999999999999999999987
Q ss_pred Cch
Q 001980 973 DGA 975 (987)
Q Consensus 973 ~g~ 975 (987)
...
T Consensus 228 ~~~ 230 (240)
T COG1126 228 KSE 230 (240)
T ss_pred CCH
Confidence 654
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-50 Score=415.11 Aligned_cols=220 Identities=40% Similarity=0.643 Sum_probs=194.2
Q ss_pred EEEEeEEEECCCC--CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC---HHHH
Q 001980 745 IELRHVDFAYPSR--PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSL 819 (987)
Q Consensus 745 I~f~~vsf~Y~~~--~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---l~~l 819 (987)
|+|++||+.|+.. +...+|+||||+|++||..||+|+||||||||++++.++-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999753 1246999999999999999999999999999999999999999999999998887766 5567
Q ss_pred hcccEEEcccccccc-ccHHHHhccCCC--CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 820 RLKIGLVQQEPALFA-ASIFDNIAYGKE--GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 820 R~~i~~VpQdp~lF~-gTIreNL~~~~~--~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
|++||+|+|++.|++ .|+.+|+.|+.. ..+.+ .+.+.|+.+|+.|+...-| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 899999999999997 899999998743 23333 4566777888877765544 58999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
+|||||..+|+||+.|||||||||+|-+.|.+.|++.- -|-|+++|||-++.+++ |||+.||++|+|+|.|+-.++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999998764 37899999999999987 8999999999999999999999
Q ss_pred cCCCch
Q 001980 970 SRPDGA 975 (987)
Q Consensus 970 ~~~~g~ 975 (987)
.+|...
T Consensus 231 ~~Pk~~ 236 (339)
T COG1135 231 ANPKHA 236 (339)
T ss_pred cCcchH
Confidence 887543
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-50 Score=401.19 Aligned_cols=218 Identities=34% Similarity=0.540 Sum_probs=190.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++||||+|.+ ..+++|+||+|++||+++++|||||||||+||+|.++++|++|+|++||+++++++..++|++||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 789999999973 45899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcc--cccCCCCCCChHHHHHHHHHHHhc
Q 001980 180 LVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYST--QVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t--~~~~~g~~LSgGqkqRialARal~ 254 (987)
||-|+.-||+. ||.|||.+-..- .+.+++.+. ..+.+..+ |++. ...+.+.+|||||+|||.+||||+
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r-----~~ELl~lv--gL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKR-----ADELLDLV--GLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHH-----HHHHHHHh--CCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 99999999976 999999975331 122222221 22333333 5542 456778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
.+|+|+|+||||+||||.++..+++.+.++.+ ++|+|+||||+++.-+ +|||.+|++|+|+..+++++++.+.
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 99999999999999999999999999988864 8999999999998655 8999999999999999999998764
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-50 Score=413.47 Aligned_cols=223 Identities=38% Similarity=0.588 Sum_probs=190.9
Q ss_pred EEEEeEEEECCCC--CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HH
Q 001980 100 IEFKNVTFSYPSR--PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WL 174 (987)
Q Consensus 100 i~~~~~~~~y~~~--~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~ 174 (987)
|++++|++.|+.. ....+|+||||+|++||+.+|||+||+|||||++++.++-.|++|+|.+||.++..++.. ..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999852 235699999999999999999999999999999999999999999999999999888654 56
Q ss_pred hcceEEEcCCCCCch-hcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 175 RDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 175 ~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
|++||+++|++.|++ .||.+|+.|..+-....+-+...+. .+.++.. |+....+..+.+|||||||||+|||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV---~elLelV--gL~dk~~~yP~qLSGGQKQRVaIARAL 156 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRV---AELLELV--GLSDKADRYPAQLSGGQKQRVAIARAL 156 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHH---HHHHHHc--CChhhhccCchhcCcchhhHHHHHHHH
Confidence 789999999999997 5999999997542221111111112 2233333 666677788889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
+.+|+|||.|||||||||++.+.|.+.|+++. .|.|+++|||.++.++. ||||.||++|+++|+|+..+++.+.
T Consensus 157 a~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~P 233 (339)
T COG1135 157 ANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP 233 (339)
T ss_pred hcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCc
Confidence 99999999999999999999999999999885 38999999999999988 8999999999999999999998764
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=386.65 Aligned_cols=220 Identities=35% Similarity=0.567 Sum_probs=198.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC-----ceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA-----GKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~-----G~I~idG~di~~--i~l 816 (987)
.++++|+++.|. +..+|+|||++|++++.+|++|||||||||++++|.|+.+..+ |+|.+||.||-+ ++.
T Consensus 7 ~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 589999999995 3459999999999999999999999999999999999999876 999999999975 678
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~------~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
-.||+++|+|+|.|.-|..||+||+.+|.. ..-|+-++++|+.|.|||-+.. .| .+.+..|||||+|
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD---rL----~~sa~~LSGGQQQ 156 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD---RL----HKSALGLSGGQQQ 156 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH---Hh----hCCccCCChhHHH
Confidence 899999999999999999999999998832 1224557899999999998864 33 4556679999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
||||||||.-+|+||+||||||+|||.+...|.+.|.++.++-||++|||.+.-... +|+...+-.|++||+|.-+++.
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999999999999999999999999999999999987655 6999999999999999999999
Q ss_pred cCCC
Q 001980 970 SRPD 973 (987)
Q Consensus 970 ~~~~ 973 (987)
.+|.
T Consensus 237 ~~P~ 240 (253)
T COG1117 237 TNPK 240 (253)
T ss_pred cCcc
Confidence 8864
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-49 Score=382.86 Aligned_cols=219 Identities=32% Similarity=0.486 Sum_probs=196.6
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-----cEEEECCEeCCC--CC
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA-----GHVLLDNVDIKT--LQ 170 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~-----G~i~~~g~~~~~--~~ 170 (987)
..++++|+++.|++ ..+|+|||++|++++++|++|||||||||||+++.++.+... |+|.++|+++.+ .+
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 35899999999984 349999999999999999999999999999999999988765 999999999966 57
Q ss_pred HHHHhcceEEEcCCCCCchhcHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 171 LRWLRDQIGLVNQEPALFATTILENILYGKPE------ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
...+|++||+|+|.|.-|+.||+||+.+|... .-++.++++++.+.+++.+.. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 88999999999999999999999999998431 123557788888888886643 35667788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+-+|+|||||||||||||.+...|.+.+.++++.-|||+|||+++...+ .|+..++..|+++|.|+.+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 9999999999999999999999999999999999999999989999999999999877 599999999999999999998
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
..+
T Consensus 236 F~~ 238 (253)
T COG1117 236 FTN 238 (253)
T ss_pred hcC
Confidence 764
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=410.42 Aligned_cols=236 Identities=49% Similarity=0.792 Sum_probs=218.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|+.+ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999642 246999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 001980 825 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 904 (987)
Q Consensus 825 ~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~I 904 (987)
|+||++.+|+.|+++||.++.+..+.+++.++++..++.+++..+|.|+++.....+.+||||||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999876554566777888888999999999999999998888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHh
Q 001980 905 LLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 982 (987)
Q Consensus 905 LlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~ 982 (987)
|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|++++++.+ .+.|+.+++.
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~~ 236 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQL 236 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHhc
Confidence 9999999999999999999999998778999999999999988999999999999999999999987 7888887753
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=414.92 Aligned_cols=235 Identities=24% Similarity=0.395 Sum_probs=216.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|+.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|.++|.++..++...+|++|
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 48999999999643 2458999999999999999999999999999999999997 799999999999988988999999
Q ss_pred EEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 179 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 179 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
+|+||+|++|++|+++|+....+ .+.++++++++.+++.+++..+|.++++.++++|.+||||||||++|||||+++|+
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred EEECCCcccchhhHHHHhhhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999964322 35678888999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHHHH
Q 001980 259 ILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRF 336 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 336 (987)
|+||||||++||+.++..+.+.|.+...++|+|+|||+++.+..||||++|++|++++.|+++++++..+.|+++...
T Consensus 159 illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 236 (275)
T cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP 236 (275)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhh
Confidence 999999999999999999999999877789999999999998889999999999999999999999977777666643
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=412.57 Aligned_cols=242 Identities=33% Similarity=0.517 Sum_probs=224.1
Q ss_pred CccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH
Q 001980 740 TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 819 (987)
Q Consensus 740 ~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l 819 (987)
...|.|+++|++++|++. +.++|+|+||+|+|||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 356789999999999642 2459999999999999999999999999999999999999999999999999999998899
Q ss_pred hcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 820 RLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 820 R~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
|++++|+||+|.+|++|+++|+.+.. ...+++++++++.+++.+++..+|.|+++.+++.+.+||+|||||++|||||+
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPEC-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcCC-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999997542 23566788899999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHH
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l 979 (987)
++|++|||||||++||+++.+.+.+.+++..+++|+|++||+++.+..||||++|++|++++.|+++++++.+++.|+.+
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHH
Confidence 99999999999999999999999999998777899999999999999999999999999999999999998877889988
Q ss_pred HHhh
Q 001980 980 LQLQ 983 (987)
Q Consensus 980 ~~~q 983 (987)
+..+
T Consensus 253 ~~~~ 256 (257)
T cd03288 253 VRTD 256 (257)
T ss_pred Hhcc
Confidence 8654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-48 Score=388.14 Aligned_cols=221 Identities=35% Similarity=0.575 Sum_probs=197.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+|+|||++|. +..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++...||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999996 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccccccc-ccHHHHhccCC--CCCC----HHHHHHHHHHcCch--hhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 825 LVQQEPALFA-ASIFDNIAYGK--EGAT----EAEVVEAARAANVH--GFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 825 ~VpQdp~lF~-gTIreNL~~~~--~~~s----d~ei~~al~~a~l~--~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
||-|.--||. .||.+||..-. ...+ ++.+.+.++.+++. +|..+.| ..|||||+||+.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHH
Confidence 9999999995 79999997421 1223 44566778888886 4666666 46999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhh-hccCEEEEEeCCEEEEecChhHHhcCC
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRP 972 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti-~~~D~Iivl~~G~ive~Gt~~eLl~~~ 972 (987)
|||..+|+||+||||.+|||+-+...+|+-+.+..+ ++|+|+|||+++.. +-+|||.||++|+|+.+|+|++++++|
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999988654 79999999999875 568999999999999999999999998
Q ss_pred CchHHHH
Q 001980 973 DGAYSRL 979 (987)
Q Consensus 973 ~g~f~~l 979 (987)
...|-+-
T Consensus 228 an~FV~~ 234 (309)
T COG1125 228 ANDFVED 234 (309)
T ss_pred cHHHHHH
Confidence 8777543
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-47 Score=451.46 Aligned_cols=254 Identities=24% Similarity=0.319 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEE
Q 001980 46 AIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFF 125 (987)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i 125 (987)
.+....|+..+...+..++.++.+++|+.++++.+++... . .....+ ..+.++++|++|+|+++ .++|+|+||++
T Consensus 272 ~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~-~-~~~~~~-~~~~i~~~~v~f~y~~~--~~~l~~i~~~i 346 (547)
T PRK10522 272 LLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF-P-RPQAFP-DWQTLELRNVTFAYQDN--GFSVGPINLTI 346 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-c-cccccC-cCceEEEEEEEEEeCCC--CeEEecceEEE
Confidence 3334578999999999999999999999999764332111 1 111111 12469999999999743 35899999999
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCH
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATM 205 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 205 (987)
++||+++|+||||||||||+++|+|+++|++|+|.+||+++++++..++|++|+||+|+|++|++|++|| + +..++
T Consensus 347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~ 422 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANP 422 (547)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 2 23444
Q ss_pred HHHHHHHHHHhHHHHHHhCCCCCcccccC---CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHH
Q 001980 206 AEVEAAASAANAHSFITLLPNGYSTQVGE---RGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALD 282 (987)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~---~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~ 282 (987)
+++.++++..++.+ .+..++ +|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+.
T Consensus 423 ~~~~~~~~~~~l~~---------~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~ 493 (547)
T PRK10522 423 ALVEKWLERLKMAH---------KLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLL 493 (547)
T ss_pred HHHHHHHHHcCCch---------hhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 55555554444333 332333 378999999999999999999999999999999999999999999987
Q ss_pred hhh--CCCeEEEEcCCCCccccCCEEEEEeCCEEEEe
Q 001980 283 RLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVET 317 (987)
Q Consensus 283 ~~~--~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~ 317 (987)
+.. .++|+|+||||++.++.||+|++|++|++++.
T Consensus 494 ~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 494 PLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 653 48999999999999999999999999999876
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-46 Score=444.07 Aligned_cols=198 Identities=23% Similarity=0.396 Sum_probs=167.8
Q ss_pred CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC--CCceEEECCccCCCCCHHHHhcccEEEcccc-ccccc
Q 001980 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP--TAGKVMIDGKDIRRLNLKSLRLKIGLVQQEP-ALFAA 835 (987)
Q Consensus 759 ~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p--~~G~I~idG~di~~i~l~~lR~~i~~VpQdp-~lF~g 835 (987)
.+..|+|||=-++||..+|++|+||||||||++.|.+-..- .+|+|+|||.+..+ +..++.+|||.|++ |+=.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 34689999999999999999999999999999999987542 47899999998876 67899999999977 55567
Q ss_pred cHHHHhccCC-----CCCCHHH----HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC-CEE
Q 001980 836 SIFDNIAYGK-----EGATEAE----VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP-AIL 905 (987)
Q Consensus 836 TIreNL~~~~-----~~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p-~IL 905 (987)
||||-|.+.. .+.+++| +.++.+..++.++- |..||.-|..||..||.||.||--|+.|| .||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 9999997642 2334443 45666666666554 44588888999999999999999999999 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchh--hhccCEEEEEe-CCEEEEecChh
Q 001980 906 LLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLST--IRGVDCIGVVQ-DGRIVEQGSHS 966 (987)
Q Consensus 906 lLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~t--i~~~D~Iivl~-~G~ive~Gt~~ 966 (987)
.||||||+||+++...|.+.+++.. .|+||++.-|.++. .+.+|+++.|+ +|+.|.+|+..
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 9999999999999999999999976 69999999999975 46789999996 57999998754
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-47 Score=379.05 Aligned_cols=223 Identities=35% Similarity=0.562 Sum_probs=189.4
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HH
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WL 174 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~ 174 (987)
..|++++++|+|++ +.+++|+||+|++||+++|+||||||||||+|+|.|+++|++|+|.++|+++.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 45999999999974 4599999999999999999999999999999999999999999999999999988764 56
Q ss_pred hcceEEEcCCCCCchh-cHHHHHhcCCCCC---CHHHHHHHHHHHhHHHHHHhCCCCCccc-ccCCCCCCChHHHHHHHH
Q 001980 175 RDQIGLVNQEPALFAT-TILENILYGKPEA---TMAEVEAAASAANAHSFITLLPNGYSTQ-VGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 175 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~t~-~~~~g~~LSgGqkqRial 249 (987)
|+++|+++|+..||+. ||+||+.|...+. ..+.+.+ .... .++.. |+... ....+.+||||+++|+||
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~-lv~~----KL~~V--GL~~~~~~~~PsELSGGM~KRvaL 156 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRE-LVLM----KLELV--GLRGAAADLYPSELSGGMRKRVAL 156 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHH-HHHH----HHHhc--CCChhhhhhCchhhcchHHHHHHH
Confidence 8899999999999977 9999999853321 2222222 1111 12221 55544 344567999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|||++.||+|+++|||||+|||.+...+.+.|++++. |.|+|+||||++.+.. ||||+++.+|+|+..|+++|+.+.
T Consensus 157 ARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s 236 (263)
T COG1127 157 ARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236 (263)
T ss_pred HHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999998864 8999999999999887 799999999999999999999886
Q ss_pred hhhH
Q 001980 327 AGAY 330 (987)
Q Consensus 327 ~~~~ 330 (987)
...|
T Consensus 237 d~P~ 240 (263)
T COG1127 237 DDPW 240 (263)
T ss_pred CCHH
Confidence 5443
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-46 Score=404.46 Aligned_cols=209 Identities=29% Similarity=0.403 Sum_probs=170.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.+++.+|+|.|+.++. +.+.++++.+..-+++++||++|+||||+++++.+-..|..|.+-+.+ |.+|
T Consensus 362 ~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ri 429 (582)
T KOG0062|consen 362 NLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLRI 429 (582)
T ss_pred eeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------ccee
Confidence 5999999999965432 689999999999999999999999999999999999999999998876 7899
Q ss_pred EEEccccccc-cccH--HHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 001980 824 GLVQQEPALF-AASI--FDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900 (987)
Q Consensus 824 ~~VpQdp~lF-~gTI--reNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr 900 (987)
+|-.|.-+=| +-.+ -+-+.--.|..+++|+++.|...|+..-+...+ + ..||||||-|+++|-....
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s------i----~~LSGGQKsrvafA~~~~~ 499 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS------I----ASLSGGQKSRVAFAACTWN 499 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc------c----cccCCcchhHHHHHHHhcC
Confidence 9999976533 2221 111111235569999999999998876554322 2 3599999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCCchHHHH
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l 979 (987)
+|.+|||||||.+||.++-..+-++|+.+ +.-||+|||+.+.+.. |+.++|.++|+|... +-.-..|+++
T Consensus 500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~i-------eg~~~~yKkl 570 (582)
T KOG0062|consen 500 NPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTPI-------EGGIDKYKKL 570 (582)
T ss_pred CCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEee-------eccHHHHHHH
Confidence 99999999999999999999999999876 3479999999999976 799999999999763 1111246666
Q ss_pred HHhh
Q 001980 980 LQLQ 983 (987)
Q Consensus 980 ~~~q 983 (987)
...+
T Consensus 571 ~~~e 574 (582)
T KOG0062|consen 571 LGAE 574 (582)
T ss_pred HHHH
Confidence 6554
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=416.37 Aligned_cols=277 Identities=25% Similarity=0.361 Sum_probs=214.4
Q ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCccEEEEeEEEECCC
Q 001980 32 GVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPS 111 (987)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~ 111 (987)
+.+++..+|+.+..+.....++..++.. .....|+..++..++ .+..... ...+..+.|+++|++++|++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~i~~~nls~~y~~ 92 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLP-------KQKKAELKQFLNKKK-TQVDLLK--EDFNHANVFEIRNFNFWYMN 92 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhcc-------cccchhhhhcccccc-ccccccc--CCCCcCceEEEEeeEEEecC
Confidence 4566777777665444433333222111 112457777765432 1110000 01123357999999999974
Q ss_pred CCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CCHHHHhcceEEEcCC
Q 001980 112 RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--LQLRWLRDQIGLVNQE 184 (987)
Q Consensus 112 ~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--~~~~~~~~~i~~v~Q~ 184 (987)
. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+...+|+.++||||+
T Consensus 93 ~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~ 171 (329)
T PRK14257 93 R-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQK 171 (329)
T ss_pred C-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecC
Confidence 3 3458999999999999999999999999999999999996 579999999999974 3456778899999999
Q ss_pred CCCchhcHHHHHhcCCCC--CCHHHH-----HHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 185 PALFATTILENILYGKPE--ATMAEV-----EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 185 ~~l~~~tv~eni~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
||+|++|++|||.|+... .+.++. ..+++.++ ++.++++.+++++.+||||||||++|||||+++|
T Consensus 172 ~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p 244 (329)
T PRK14257 172 PTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNALSGGQQQRLCIARAIALEP 244 (329)
T ss_pred CccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence 999999999999986421 222222 22233332 3445667899999999999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+||||||||++||+++...+.+.|.++.+++|+|+|||+++++.. ||||++|++|+|++.|+++++...
T Consensus 245 ~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 245 EVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999998878999999999999887 999999999999999999998754
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-47 Score=394.75 Aligned_cols=214 Identities=35% Similarity=0.530 Sum_probs=188.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++|+|++ .++|+|+||++++||+++|+||||||||||||+|+|+++|.+|+|.++|+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 3789999999984 4599999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCC-chhcHHHHHhcCCCCC----------CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHH
Q 001980 179 GLVNQEPAL-FATTILENILYGKPEA----------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247 (987)
Q Consensus 179 ~~v~Q~~~l-~~~tv~eni~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRi 247 (987)
|||||++.. +.-||+|-+.+|+... +.+.+.++++..++.+ ...+...+||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~-----------la~r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEH-----------LADRPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHH-----------HhcCcccccChhHHHHH
Confidence 999999755 4569999999985321 1223445555554444 44555678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcc-ccCCEEEEEeCCEEEEecChHHHH
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
.|||||+++|+|++||||||+||...+.++++.++++. +|+|+|+|+||++.. +.||++++|++|+++.+|++++++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999986 389999999999876 559999999999999999999987
Q ss_pred Hh
Q 001980 325 AK 326 (987)
Q Consensus 325 ~~ 326 (987)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 65
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-47 Score=383.29 Aligned_cols=199 Identities=36% Similarity=0.509 Sum_probs=168.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.+++++++++|++ ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|.++..- ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4889999999985 4599999999999999999999999999999999999999999999999887432 3479
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCCC--HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEAT--MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+||+|++.||+= ||+||+.++..... .++..+ .+.+.++.. |+...-+..+.+||||||||+||||||+.
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~-----~a~~~L~~V--gL~~~~~~~P~qLSGGMrQRVaiARAL~~ 147 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE-----RAKELLELV--GLAGFEDKYPHQLSGGMRQRVAIARALAT 147 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHH-----HHHHHHHHc--CCcchhhcCccccChHHHHHHHHHHHHhc
Confidence 999999999986 99999999865321 111111 112333333 55555566677999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCC
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQG 312 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G 312 (987)
+|+||||||||+|||+.|+..+++.+.++. .++||++||||+++.-. +|||++|.++
T Consensus 148 ~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999999998885 37999999999998765 8999999983
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-46 Score=398.06 Aligned_cols=234 Identities=48% Similarity=0.800 Sum_probs=211.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|+.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999642 245899999999999999999999999999999999999999999999999988777777888999
Q ss_pred EEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 001980 180 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKI 259 (987)
Q Consensus 180 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~i 259 (987)
|++|++++|+.|++||+.++.+....+++...++..++.+.+..+|.|+++..+..+.+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999989999999986543444556666677777888899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHH
Q 001980 260 LLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLI 334 (987)
Q Consensus 260 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 334 (987)
+||||||++||+.+++.+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++....+.|..+.
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence 999999999999999999999998877899999999999998899999999999999999999988776665543
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-46 Score=397.21 Aligned_cols=233 Identities=58% Similarity=0.924 Sum_probs=214.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++. ..++|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999643 235899999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 001980 825 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 904 (987)
Q Consensus 825 ~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~I 904 (987)
|+||++.+|..|++||+.++......+++.+.++..++.+++..+|.|+++........||+|||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999887655566777788888899999999999999999888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHH
Q 001980 905 LLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 905 LlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l 979 (987)
|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++..+ .+.|+.+
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~ 233 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhhh
Confidence 9999999999999999999999998788999999999999988999999999999999999999876 5666543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-46 Score=396.80 Aligned_cols=235 Identities=53% Similarity=0.839 Sum_probs=218.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999632 35899999999999999999999999999999999999999999999999999988888999999
Q ss_pred EEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 001980 825 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 904 (987)
Q Consensus 825 ~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~I 904 (987)
|+||++.+|++|+++|+.++....+++++.++++.+++.+++..+|.|+++.+.....+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999887665677788888999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHh
Q 001980 905 LLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 982 (987)
Q Consensus 905 LlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~ 982 (987)
|||||||++||+++...+.+.|.+..++.|+|+++|+++.+..||++++|++|++++.|+++++..+ .+.|+.++..
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~~~ 235 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWKA 235 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHHhc
Confidence 9999999999999999999999987668899999999999988999999999999999999999875 6778777654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-46 Score=392.83 Aligned_cols=221 Identities=35% Similarity=0.593 Sum_probs=207.2
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
|.|+++|++++|+.. +.++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 468999999999643 2369999999999999999999999999999999999999999999999999998898899999
Q ss_pred cEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 001980 823 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 902 (987)
Q Consensus 823 i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p 902 (987)
++|+||+|.+|++|++||+.+.. ....+++.++++..++.+++..+|.|+++..++.+.+||+|||||++|||||+++|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG-EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC-CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998654 35678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 001980 903 AILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSH 965 (987)
Q Consensus 903 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~ 965 (987)
++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|++
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 999999999999999999999999998778999999999999999999999999999998863
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-46 Score=396.84 Aligned_cols=236 Identities=62% Similarity=1.002 Sum_probs=215.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++..+.++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999996532346999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 001980 825 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 904 (987)
Q Consensus 825 ~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~I 904 (987)
|+||++.+|..|++||+.++......+++.+.++..++.+++..+|.|+++.......+||||||||++|||||+++|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999887555566777888888899999999999999999888899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHH
Q 001980 905 LLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 981 (987)
Q Consensus 905 LlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~ 981 (987)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++... .+.++.++.
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 236 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKLVK 236 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHHHhh
Confidence 9999999999999999999999987778999999999999988999999999999999999999875 555665553
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=393.40 Aligned_cols=227 Identities=51% Similarity=0.879 Sum_probs=212.1
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
|.|+++|++++|++. .++|+|+||+|++||+++|+|+||||||||+++|.|+++|.+|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 468999999999632 358999999999999999999999999999999999999999999999999998888889999
Q ss_pred cEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 001980 823 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 902 (987)
Q Consensus 823 i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p 902 (987)
++|+||++.+|.+|+++|+.++.+...++++.++++..++.++++.+|.|+++.++.....||||||||++|||||+++|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998876555677888888999999999999999999999889999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcC
Q 001980 903 AILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 903 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|++++++++
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999999999988778999999999999988999999999999999999988765
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-46 Score=411.90 Aligned_cols=221 Identities=35% Similarity=0.598 Sum_probs=192.7
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH---Hh
Q 001980 745 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---LR 820 (987)
Q Consensus 745 I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~---lR 820 (987)
|+++||+++|++.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996321 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cccEEEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 821 LKIGLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 821 ~~i~~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
++|+||||++.+|. .|+++|+.++.. ..+ ++.+.++++.+++.++....| ..||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 89999999999995 799999986531 222 234667888888876654433 479999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
|||||+.+|+|||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+|+|.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999999753 7899999999999965 89999999999999999999987
Q ss_pred CCCchH
Q 001980 971 RPDGAY 976 (987)
Q Consensus 971 ~~~g~f 976 (987)
++...+
T Consensus 231 ~p~~~~ 236 (343)
T TIGR02314 231 HPKTPL 236 (343)
T ss_pred CCCcHH
Confidence 765444
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=403.19 Aligned_cols=213 Identities=33% Similarity=0.541 Sum_probs=187.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++.. +++|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|.+++++++++ +.|
T Consensus 3 ~i~l~~v~K~yg~~~---~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSFE---VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCce---eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 489999999998432 899999999999999999999999999999999999999999999999999999875 589
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCCC------HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEAT------MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
|+|+|+..||+. ||+|||.|+..... ++++.++++.. +++..+.+++.+|||||||||||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L-----------~l~~lL~r~P~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLL-----------GLEHLLNRKPLQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHc-----------CChhHHhcCcccCChhhHHHHHHHH
Confidence 999999999977 99999999865321 33444555444 4444555566799999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
||+++|+++|||||+|+||++.+..+...|+++.+ +.|+|+||||..++.. +|||.+|++|+|.+.|++.|+..+.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 99999999999999999999999999999988753 7899999999888765 8999999999999999999998654
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=372.96 Aligned_cols=217 Identities=34% Similarity=0.551 Sum_probs=187.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC---HHHHh
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ---LRWLR 175 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~~ 175 (987)
.|+++|+++.||+ ...+|+||||+|++||+++|+|+||||||||||+|.|+.+|++|+|.++|.++.... ...+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999984 356999999999999999999999999999999999999999999999999988776 45678
Q ss_pred cceEEEcCCCCCchh-cHHHHHhcCCCCC-----------CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHH
Q 001980 176 DQIGLVNQEPALFAT-TILENILYGKPEA-----------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ 243 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 243 (987)
++|||++|++.|.+. ||.+|++.|.-.. +.++...+ .+.++.+ |+....-.+..+|||||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~A------l~aLerv--gi~~~A~qra~~LSGGQ 152 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQA------LDALERV--GILDKAYQRASTLSGGQ 152 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHH------HHHHHHc--CcHHHHHHHhccCCcch
Confidence 899999999999876 9999999875321 12222211 2223333 55555666778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecCh
Q 001980 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTH 320 (987)
Q Consensus 244 kqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~ 320 (987)
+|||+|||||+++|+|+|.|||+|+|||.+.+.+++.|++.. .|.|+|+.-|+++.++. ||||+-|++|+|+.+|+.
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 999999999999999999999999999999999999999885 48999999999999865 899999999999999999
Q ss_pred HHHHH
Q 001980 321 EELIA 325 (987)
Q Consensus 321 ~~l~~ 325 (987)
+|+-+
T Consensus 233 ~el~~ 237 (258)
T COG3638 233 SELTD 237 (258)
T ss_pred hhhhH
Confidence 98644
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-46 Score=386.84 Aligned_cols=214 Identities=34% Similarity=0.565 Sum_probs=192.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.++++|++|+|.+ .++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|++||.|+.+++.+++-+++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 3789999999963 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccc-ccccccHHHHhccCCCC-------CC--H-HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 824 GLVQQEP-ALFAASIFDNIAYGKEG-------AT--E-AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 824 ~~VpQdp-~lF~gTIreNL~~~~~~-------~s--d-~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
+||||++ .-|.-||+|=+.+|+-. .+ | +.+.+|++..++.++..+. + ..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-------~----~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-------V----DELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-------c----cccChhHHHHH
Confidence 9999996 45677999999877421 12 3 3478889999999886542 3 35999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhh-hccCEEEEEeCCEEEEecChhHHh
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti-~~~D~Iivl~~G~ive~Gt~~eLl 969 (987)
.|||||.++|+||+||||||+||......|++.+++.. +++|+|+|.|+++.. +.||++++|++|+|+.+|+|+|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999976 379999999999864 678999999999999999999988
Q ss_pred cC
Q 001980 970 SR 971 (987)
Q Consensus 970 ~~ 971 (987)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 64
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=353.90 Aligned_cols=210 Identities=35% Similarity=0.560 Sum_probs=188.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
+.+++|.|+|+..+ -..+++|++||++||+||||||||||+++|+|+..|.+|+|.++|+|....++.+ +-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChh
Confidence 56789999997432 4678999999999999999999999999999999999999999999998877754 4699
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 180 LVNQEPALFAT-TILENILYGKPE------ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
+++|+..||.- ||++||.+|... ...+++..++..+++..+.+++|. +||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 99999999976 999999999531 234678888999999999988886 899999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
|+++-+||+||||+|+|||.-++.+...+.++. ++.|+++|||+++.+.. +|+++++++|+|.++|+.+++....
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 999999999999999999999999999998885 48899999999999876 7999999999999999999887643
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-46 Score=377.57 Aligned_cols=209 Identities=36% Similarity=0.537 Sum_probs=173.1
Q ss_pred EEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HH-
Q 001980 100 IEFKNVTFSYPSR-PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WL- 174 (987)
Q Consensus 100 i~~~~~~~~y~~~-~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~- 174 (987)
++++|+++.|... ....+|+++||+|++||+++|+|||||||||||++|.|+..|++|+|.++|.++..++.+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 5789999999643 225689999999999999999999999999999999999999999999999999988753 33
Q ss_pred hcceEEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCccccc-CCCCCCChHHHHHHHHH
Q 001980 175 RDQIGLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVG-ERGVQLSGGQKQRIAIA 250 (987)
Q Consensus 175 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~-~~g~~LSgGqkqRialA 250 (987)
+++||||+|+..|++. |++|||.+... .....+..+ ...+.++.+ |+..... ..+.+||||||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~-----~~~~l~~~l--gl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR-----AAEELLEVL--GLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHH-----HHHHHHHhc--CChhhhccCCchhcCHHHHHHHHHH
Confidence 4579999999999977 99999996321 111111111 111223333 5553343 66789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCccccCCEEEEEeCCEEE
Q 001980 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVV 315 (987)
Q Consensus 251 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~ 315 (987)
|||+.+|++++.||||++||.++.+.+++.+.++. .|+|+|+||||......|||++.|++|++.
T Consensus 155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 155 RALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 99999999999999999999999999999999984 389999999999999999999999999954
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=360.05 Aligned_cols=206 Identities=33% Similarity=0.514 Sum_probs=183.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH---HHHhc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL---RWLRD 176 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~~ 176 (987)
|+|+||+++|++. .++|+|+||+|++||++-|+||||||||||+|+|.+...|+.|+|.++|.|+..+.. -.+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999864 569999999999999999999999999999999999999999999999999987754 35899
Q ss_pred ceEEEcCCCCCchh-cHHHHHhcCCC------CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 177 QIGLVNQEPALFAT-TILENILYGKP------EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~-tv~eni~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
+||+|+||..|... ||.||+.|... ..-.+++.++++.+++.+....+|. +||||||||++|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 99999999998866 99999998643 1123566777777777777767765 899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccC-CEEEEEeCCEEEEec
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 318 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~-d~i~~l~~G~i~~~g 318 (987)
|||++.+|++||.||||.+|||.....|++.+.++. .|.||+++||+.+.+..+ -|++.+++|+++...
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999999999999999999999999986 499999999999999886 789999999998654
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=406.45 Aligned_cols=214 Identities=36% Similarity=0.534 Sum_probs=187.6
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..++++|++++|+ +..+++|+||+|++||+++++|||||||||||++|+|+..|++|+|.++|+++..++++. +.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~k--R~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK--RP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhh--cc
Confidence 3589999999998 345999999999999999999999999999999999999999999999999999998874 58
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCC---CCH----HHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPE---ATM----AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
|++|+|+..||+- ||+|||.||... ... +++.++++.+++.+ .-.+++.+|||||||||||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~-----------~~~R~p~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG-----------FADRKPHQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-----------hhhhChhhhChHHHHHHHH
Confidence 9999999999976 999999999651 111 24555555554444 4455667999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHHHh
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
||||..+|++||||||+|+||.+-+..+...++++. .|.|.|+||||.++.- .+|||.+|++|+|...|+++|+...
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999999999998875 3999999999998865 4799999999999999999999876
Q ss_pred h
Q 001980 327 A 327 (987)
Q Consensus 327 ~ 327 (987)
.
T Consensus 228 P 228 (352)
T COG3842 228 P 228 (352)
T ss_pred c
Confidence 4
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=370.16 Aligned_cols=226 Identities=31% Similarity=0.518 Sum_probs=191.0
Q ss_pred cEEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCC-CHHHHhc
Q 001980 744 EIELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL-NLKSLRL 821 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i-~l~~lR~ 821 (987)
.++++|+++.|+.+.. .++|+||||+|.+||++||||+||||||||.++|.|+.+|++|+|++||.++... ..+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 4889999999975421 1499999999999999999999999999999999999999999999999777553 3446788
Q ss_pred ccEEEcccccc-cc--ccHHHHhccCC----CCCCHHHHHHHHHHcCchh-hHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 822 KIGLVQQEPAL-FA--ASIFDNIAYGK----EGATEAEVVEAARAANVHG-FVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 822 ~i~~VpQdp~l-F~--gTIreNL~~~~----~~~sd~ei~~al~~a~l~~-~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
.+.+|+|||.- ++ -||++-|.-+. -+..+.+++++++.+++.+ |..+.| ..||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 99999999962 22 36666554221 1234566999999999965 444444 469999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR--TTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~--TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
|||||.-+|++||||||||+||...++.|++.+.+..+++ |.|+|||++..+.. ||||+||++|++||.++-.++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999999987654 99999999999977 89999999999999999999998
Q ss_pred CCCchHHHHH
Q 001980 971 RPDGAYSRLL 980 (987)
Q Consensus 971 ~~~g~f~~l~ 980 (987)
.+...|.+..
T Consensus 232 ~~~h~ytr~L 241 (252)
T COG1124 232 HPSHPYTREL 241 (252)
T ss_pred CCccHHHHHH
Confidence 8666777654
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-46 Score=356.11 Aligned_cols=208 Identities=34% Similarity=0.562 Sum_probs=188.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH---Hhc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---LRL 821 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~---lR~ 821 (987)
|+|+||+.+|++. .++|+||||+|++||.+-++|||||||||++++|++...|+.|+|.++|.|++.++-++ ||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 8999999999865 46999999999999999999999999999999999999999999999999999887654 899
Q ss_pred ccEEEccccccc-cccHHHHhccCCC--CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 822 KIGLVQQEPALF-AASIFDNIAYGKE--GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 822 ~i~~VpQdp~lF-~gTIreNL~~~~~--~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
+||+|+||..|+ +-|+.||++++.. .. -.+.+.++|+.++|.+-...+|. .|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 999999999876 5699999998742 22 24567889999999999999984 699999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhcc-CEEEEEeCCEEEEecCh
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSH 965 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~-D~Iivl~~G~ive~Gt~ 965 (987)
|||++.+|++||-||||-+||+++...|++.+.+.- .|.|||+.||+.+.+..+ -|++.+++|+++....+
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 999999999999999999999999999999999865 589999999999999887 67999999999987654
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=396.80 Aligned_cols=218 Identities=37% Similarity=0.619 Sum_probs=198.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|.+. .+|+|+||+|+.||.++|+|||||||||++++|.||.+|++|+|.|||.|++++++++ +.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999532 2899999999999999999999999999999999999999999999999999999876 889
Q ss_pred EEEcccccccc-ccHHHHhccCCCC------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKEG------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~~------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
++|+|+..||. .||++||.|+... -.++++.++++..++...+++.| ..||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 99999999996 5999999987532 23567789999999999988877 469999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
||+++|++++||||.|+||+.....+...|+++.+ +.|+|.|||+...++. +|||+||.+|+|.+.|+|.|+..+|.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999999999999988653 6899999999988765 79999999999999999999999987
Q ss_pred chHH
Q 001980 974 GAYS 977 (987)
Q Consensus 974 g~f~ 977 (987)
+.|-
T Consensus 227 n~fV 230 (338)
T COG3839 227 NLFV 230 (338)
T ss_pred chhh
Confidence 7664
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=364.91 Aligned_cols=226 Identities=32% Similarity=0.569 Sum_probs=197.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH---HHh
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLR 820 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~---~lR 820 (987)
.|++++|+++|.+ ..||+||||+|++||.+||+|+||||||||++++.|+..|++|+|.|+|.|+.+++-+ .+|
T Consensus 8 ~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 5999999999953 3699999999999999999999999999999999999999999999999999998865 469
Q ss_pred cccEEEccccccccc-cHHHHhccCCCC---CCHHHHH----HHHHHcCchhh-HhhCCCcCCCccCCCCCCCChhHHHH
Q 001980 821 LKIGLVQQEPALFAA-SIFDNIAYGKEG---ATEAEVV----EAARAANVHGF-VSALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 821 ~~i~~VpQdp~lF~g-TIreNL~~~~~~---~sd~ei~----~al~~a~l~~~-i~~lp~gldt~vge~G~~LSgGQrQr 891 (987)
+++|+++|+..||+. ||+||+.++-.+ .+++++. ..++.+||..- .+..| ..||||.+.|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR 153 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR 153 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence 999999999999965 999999987543 3444443 45667777665 33334 5699999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
+||||||.-+|+||++|||||+|||.+...+-+.|+++.+ +.|+++|||+++++.. ||||+++.+|+|+-+|++++|
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988764 7899999999999877 599999999999999999999
Q ss_pred hcCCCchHHHHHHhh
Q 001980 969 VSRPDGAYSRLLQLQ 983 (987)
Q Consensus 969 l~~~~g~f~~l~~~q 983 (987)
.+.++...+++++..
T Consensus 234 ~~sd~P~v~qf~~G~ 248 (263)
T COG1127 234 LASDDPWVRQFFNGI 248 (263)
T ss_pred HhCCCHHHHHHhcCC
Confidence 998777777766543
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-45 Score=386.84 Aligned_cols=226 Identities=51% Similarity=0.869 Sum_probs=206.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++. .++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 48999999999732 3489999999999999999999999999999999999999999999999998877777788889
Q ss_pred EEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 179 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 179 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
+|++|++++|+.|++||+.++.+.....++..+++..++.+.++.+|.|+++.++....+||||||||++|||||+.+|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998999999998765545566777777788888899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 259 ILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++.++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999999999988778999999999999888999999999999999998877543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-45 Score=388.17 Aligned_cols=230 Identities=62% Similarity=0.944 Sum_probs=207.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++++|++. +.++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999743 235899999999999999999999999999999999999999999999999988777777788899
Q ss_pred EEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 001980 180 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKI 259 (987)
Q Consensus 180 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~i 259 (987)
|++|++++|+.|++||+.++.+.....++...++..++.+.++.+|.|+++..+..+.+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987654444566666777778888999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhH
Q 001980 260 LLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAY 330 (987)
Q Consensus 260 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 330 (987)
+||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++....+.|
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~ 230 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVY 230 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcch
Confidence 99999999999999999999999887789999999999999889999999999999999998887654443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-45 Score=384.23 Aligned_cols=220 Identities=45% Similarity=0.743 Sum_probs=203.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
|.|+++|++++|++. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++...+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 468999999999642 2469999999999999999999999999999999999999999999999999988887788899
Q ss_pred cEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 001980 823 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 902 (987)
Q Consensus 823 i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p 902 (987)
++|+||++.+|..|++||+.++....+++++.++++..++.+.+..+|.|++|.+.....+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998765445666788889999999999999999999999888999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEec
Q 001980 903 AILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQG 963 (987)
Q Consensus 903 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~G 963 (987)
++|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999987668999999999988889999999999998764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=387.83 Aligned_cols=473 Identities=16% Similarity=0.150 Sum_probs=354.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCh---HHHHHHHHhhHHHHHHHHHH
Q 001980 465 FVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNS---SLVAARLATDAADVKSAIAD 541 (987)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~---g~i~~r~s~D~~~i~~~l~~ 541 (987)
.+.+|..++.+..++...+.|+......+.-.-|-+.++++-+...-.|+-...-.. -..=.|+..|+..+-+.-..
T Consensus 88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~ 167 (604)
T COG4178 88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLD 167 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHH
Confidence 455666677777777777888877777777777777777777766533332211000 11226888998888776666
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001980 542 RISVILQNMTSLLTSFIVAF---------------IVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMI 606 (987)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (987)
....++.++++++...++++ .++..+.+++++.+++.-++.+...+.+.+.+-+..+.++.....
T Consensus 168 l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~ 247 (604)
T COG4178 168 LSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYS 247 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHH
Confidence 66667777776666655554 222233333444444444444555666666677777777777777
Q ss_pred HHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHH
Q 001980 607 AGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIK 686 (987)
Q Consensus 607 ~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~ 686 (987)
+.-..++.+.|..|+.|+...++..+..+.......+.......+..+.....++..++-...+......|.+++|.++.
T Consensus 248 Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmq 327 (604)
T COG4178 248 LVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQ 327 (604)
T ss_pred HHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHH
Confidence 77788889999999999887777766665555544444444444444444444444455556666677899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CCCCCCCCC--CCC---CCccccEEEEeEEEECCCCCC
Q 001980 687 VFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRST--RIDPDDPDA--EPV---ETIRGEIELRHVDFAYPSRPD 759 (987)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~--~~~~~~~~~--~~~---~~~~g~I~f~~vsf~Y~~~~~ 759 (987)
...++.....+++.++...+.+..-.....|+.++.+... +.++..+.. ... ...+..|+|+|++..-|++
T Consensus 328 a~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~-- 405 (604)
T COG4178 328 AVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG-- 405 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--
Confidence 9999999999999999999999999999999988764322 111111111 000 1114679999999998754
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHH
Q 001980 760 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 839 (987)
Q Consensus 760 ~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIre 839 (987)
.+.|+++||.|+|||.+-|.|+||||||||+++|.|+++-.+|+|.+=. -..+-|+||.|++-.||+||
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre 474 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLRE 474 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHHH
Confidence 3689999999999999999999999999999999999999999987641 14588999999999999999
Q ss_pred HhccCCCC--CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 001980 840 NIAYGKEG--ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 917 (987)
Q Consensus 840 NL~~~~~~--~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~ 917 (987)
=|+||... .+|+|+.++|.+++|.++++++.+ .+ .-..-||+|||||||+||.||++|++++|||||||||++
T Consensus 475 ~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-~~----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~ 549 (604)
T COG4178 475 ALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-ED----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549 (604)
T ss_pred HHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-cC----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChH
Confidence 99998764 899999999999999999998743 22 245679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEe
Q 001980 918 SECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQ 955 (987)
Q Consensus 918 te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~ 955 (987)
+|..+.+.+++...++|+|.|+||.....-.++.+-++
T Consensus 550 ~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 550 TEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 99999999999999999999999998877777766554
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=388.14 Aligned_cols=229 Identities=72% Similarity=1.085 Sum_probs=205.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|+++.|++..+.++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 46899999997533346899999999999999999999999999999999999999999999999988777777777899
Q ss_pred EEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 001980 180 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKI 259 (987)
Q Consensus 180 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~i 259 (987)
|++|++.+++.|++||+.++.+....++....++..++.+++..+|.|+++..+....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999988999999987654444555666666777888889999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhh
Q 001980 260 LLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAG 328 (987)
Q Consensus 260 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 328 (987)
+||||||++||+.+++.+.+.|+++.+|+|+|++||+++.+..||++++|++|++++.|+.+++.....
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 229 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKG 229 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcCh
Confidence 999999999999999999999988777899999999999988899999999999999999888766543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=386.67 Aligned_cols=230 Identities=57% Similarity=0.854 Sum_probs=208.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++. ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999632 34899999999999999999999999999999999999999999999999998888777888899
Q ss_pred EEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 001980 180 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKI 259 (987)
Q Consensus 180 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~i 259 (987)
|++|++++|+.|++||+.++.+......+...++..++.+.+..+|.|+++.+..++.+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987654455556666777788888899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHH
Q 001980 260 LLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYA 331 (987)
Q Consensus 260 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 331 (987)
+||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++......+.
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~ 230 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYA 230 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHH
Confidence 999999999999999999999998866899999999999998899999999999999999988876544443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-45 Score=376.65 Aligned_cols=210 Identities=30% Similarity=0.497 Sum_probs=180.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|+++ ++|+||||++++|++++|+||||||||||+|+|+|+++|++|+|.+.|.+.+.... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 48999999999743 49999999999999999999999999999999999999999999999987655432 3579
Q ss_pred EEEcCCC---CCchhcHHHHHhcCCCCC----------CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 179 GLVNQEP---ALFATTILENILYGKPEA----------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 179 ~~v~Q~~---~l~~~tv~eni~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
|||||.. |-|+-||+|-+.+|.... +.+++.++++.+++.++ ..+...+|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~-----------~~r~i~~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDL-----------RDRQIGELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhh-----------hCCcccccCcHHHH
Confidence 9999965 668999999999984321 13566667766665543 34556689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC-CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
|+.|||||+++|++|+|||||+++|+.++..+++.|+++++ |+||++||||++.+.. +|+|+.|+ +++...|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999999999999974 9999999999998865 89999996 568899999998
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
.+.
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 764
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-45 Score=378.53 Aligned_cols=215 Identities=39% Similarity=0.660 Sum_probs=195.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC-CCCHHHHhcc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR-RLNLKSLRLK 822 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~-~i~l~~lR~~ 822 (987)
.|+++|++|+|+++ .++|+++||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.+++ ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999765 47999999999999999999999999999999999999999999999999998 5889999999
Q ss_pred cEEEcccc--ccccccHHHHhccCCC--CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 823 IGLVQQEP--ALFAASIFDNIAYGKE--GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 823 i~~VpQdp--~lF~gTIreNL~~~~~--~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
+|+|+|+| .+|..||.+.+.|+.. ..+.+ .+.++++.+++.++.+.-| .+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHh
Confidence 99999999 7999999999998753 23443 4677888888887754443 5799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|.+|..+|+|||||||||+||+...+.+.+.++++.+ ++|+|+|||+++.+.. |||++||++|+++.+|+|++++++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999999864 4799999999999988 899999999999999999999876
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-45 Score=379.32 Aligned_cols=215 Identities=35% Similarity=0.590 Sum_probs=189.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC-CCCHHHHhcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK-TLQLRWLRDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~-~~~~~~~~~~ 177 (987)
.++++|++|+|++. .++|+|+||+|++|+.++|+|+||||||||++++.|+++|++|+|.++|.++. ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999865 46999999999999999999999999999999999999999999999999988 4778889999
Q ss_pred eEEEcCCC--CCchhcHHHHHhcCCCCC--CHH----HHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 178 IGLVNQEP--ALFATTILENILYGKPEA--TMA----EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 178 i~~v~Q~~--~l~~~tv~eni~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
||||+|+| .+|..||.|.+.||..+. ..+ ++.++++.+ |+.....+...+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~v-----------gl~~~~~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELV-----------GLEELLDRPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHc-----------CchhhccCCccccCCcceeeHHh
Confidence 99999999 788999999999996532 222 333444444 44444556667999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|.+|+.+|++||||||||+||+..++.+.+.++++.+ |+|+|++|||++.+.. ||++++|++|+++.+|++.++.+.
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999999863 5899999999999876 999999999999999999888764
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=358.43 Aligned_cols=475 Identities=20% Similarity=0.284 Sum_probs=354.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHH
Q 001980 465 FVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRIS 544 (987)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~ 544 (987)
++..+.++..+..+...+........+++...++|.++.++++.+|+.-+.+ .+.++++.++++|+.++. +-...++
T Consensus 50 ~l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier--~~~~rlla~L~~Dvr~IS-f~~s~lp 126 (546)
T COG4615 50 VLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER--LGSARLLAGLTSDVRNIS-FAFSRLP 126 (546)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH--hcccchhhhhccccccee-ehHhhhH
Confidence 3444555555555666677778888999999999999999999999999975 799999999999999998 4455667
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHH
Q 001980 545 VILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQN 624 (987)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~ 624 (987)
.+.+..+.++++...+++.++++.+++++.+.+.++..++.....-+..+..+..+..+..+.+..++|.+.++..+--.
T Consensus 127 ~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~ 206 (546)
T COG4615 127 ELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERA 206 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHH
Confidence 78888888999999999999998888887777777777766666656566777777888889999999999988764322
Q ss_pred H--HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 001980 625 K--ILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETV 702 (987)
Q Consensus 625 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (987)
+ +.+.|....+...+...+............+.+.+......+|+...+. .-+.....+..+.+.+...|+.+.+
T Consensus 207 ~~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~---w~st~~a~tivlvlLflr~pL~s~v 283 (546)
T COG4615 207 EYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLG---WASTNVAATIVLVLLFLRTPLLSAV 283 (546)
T ss_pred HHHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchhhHHHHHHHHHHHHhhHHHHHH
Confidence 2 2222222222222211111111112233444555555555566655432 2233333445556666778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCC
Q 001980 703 SLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGAS 782 (987)
Q Consensus 703 ~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~s 782 (987)
...+.+.++..+.+++.++-..+...+-..+...| .. ..|+++||.|.|++.. --+..||++|++||.|-|+|.|
T Consensus 284 gilP~l~~AqvA~~kiakle~~~~~a~~~~~q~~p--~~-~~lelrnvrfay~~~~--FhvgPiNl~ikrGelvFliG~N 358 (546)
T COG4615 284 GILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFP--DW-KTLELRNVRFAYQDNA--FHVGPINLTIKRGELVFLIGGN 358 (546)
T ss_pred hhhhHHHHHHHHHHHHHHhhcCCccccCCCCCcCC--cc-cceeeeeeeeccCccc--ceecceeeEEecCcEEEEECCC
Confidence 99999999999999998765432211111111111 22 3599999999997431 3578999999999999999999
Q ss_pred CCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCC-CCHHHHHHHHHHcC
Q 001980 783 GSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEG-ATEAEVVEAARAAN 861 (987)
Q Consensus 783 GsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~-~sd~ei~~al~~a~ 861 (987)
||||||++++|.|+|.|++|+|++||.+++.=+++++|+-++-|+-|.+||+.++ +.+. ++++.+..-+++..
T Consensus 359 GsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLe 432 (546)
T COG4615 359 GSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLE 432 (546)
T ss_pred CCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998764 3333 66776666555554
Q ss_pred chhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEe
Q 001980 862 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVA 939 (987)
Q Consensus 862 l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~Ia 939 (987)
+....+ +.+|==++ ..||-|||.|+|+--|++-+.+|+++||=-+--||.=.+...+.+--.. .|+||+.||
T Consensus 433 l~~kts-l~d~~fs~-----~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIs 506 (546)
T COG4615 433 LAHKTS-LNDGRFSN-----LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAIS 506 (546)
T ss_pred Hhhhhc-ccCCcccc-----cccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEe
Confidence 433322 22332222 3699999999999999999999999999999999999988877765443 499999999
Q ss_pred cCchhhhccCEEEEEeCCEEEEe
Q 001980 940 HRLSTIRGVDCIGVVQDGRIVEQ 962 (987)
Q Consensus 940 HRl~ti~~~D~Iivl~~G~ive~ 962 (987)
|+-.-...+||++.|++|+++|.
T Consensus 507 HDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 507 HDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred cCchhhhhHHHHHHHhcCceeec
Confidence 99999999999999999999986
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=397.07 Aligned_cols=221 Identities=24% Similarity=0.437 Sum_probs=184.9
Q ss_pred cEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCC-------
Q 001980 744 EIELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL------- 814 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i------- 814 (987)
.|+++|++|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999996421 23699999999999999999999999999999999999999999999999998653
Q ss_pred ---------CHHHHhcccEEEcccc--ccccccHHHHhccCCC--CCCHHHHHHHHHHcCchhhHhhCCCcCC-CccCCC
Q 001980 815 ---------NLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEAEVVEAARAANVHGFVSALPNAYK-TPVGER 880 (987)
Q Consensus 815 ---------~l~~lR~~i~~VpQdp--~lF~gTIreNL~~~~~--~~sd~ei~~al~~a~l~~~i~~lp~gld-t~vge~ 880 (987)
....+|++++||+|+| .+|++|+++|+.++.. ..++++..+ .+ .+++..+ |++ ......
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~~--~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---LA--KFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---HH--HHHHHHc--CCChhHhcCC
Confidence 3567899999999998 6899999999987532 233433321 11 1223322 332 234566
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhh-hccCEEEEEeCCE
Q 001980 881 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTI-RGVDCIGVVQDGR 958 (987)
Q Consensus 881 G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti-~~~D~Iivl~~G~ 958 (987)
+.+||||||||++|||||+++|+||||||||++||+.+...+.+.|++.. +++|||+|||+++.+ ..||+|++|++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 77899999999999999999999999999999999999999999998864 589999999999987 5699999999999
Q ss_pred EEEecChhHHhcC
Q 001980 959 IVEQGSHSELVSR 971 (987)
Q Consensus 959 ive~Gt~~eLl~~ 971 (987)
+++.|+|++++.+
T Consensus 254 i~~~g~~~~~~~~ 266 (320)
T PRK13631 254 ILKTGTPYEIFTD 266 (320)
T ss_pred EEEeCCHHHHhcC
Confidence 9999999987654
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=385.56 Aligned_cols=218 Identities=37% Similarity=0.600 Sum_probs=186.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH---HHHhc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL---KSLRL 821 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l---~~lR~ 821 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999953 359999999999999999999999999999999999999999999999999987764 56789
Q ss_pred ccEEEccccccccc-cHHHHhccCCC---CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 822 KIGLVQQEPALFAA-SIFDNIAYGKE---GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 822 ~i~~VpQdp~lF~g-TIreNL~~~~~---~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
.++||||++.+|.+ |+++|+.++.. ..+. +++.++++..++.++... . ...||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDL-------Y----PAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcC-------C----hhhCCHHHHHHHH
Confidence 99999999999986 99999986521 1232 335566777766554332 2 2469999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
|||||+++|+||||||||++||+.+...+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999998753 7899999999998875 89999999999999999999986
Q ss_pred CCCchHH
Q 001980 971 RPDGAYS 977 (987)
Q Consensus 971 ~~~g~f~ 977 (987)
. ...|.
T Consensus 227 ~-~~~~~ 232 (235)
T cd03261 227 S-DDPLV 232 (235)
T ss_pred C-CChhh
Confidence 5 44443
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-44 Score=385.96 Aligned_cols=236 Identities=32% Similarity=0.520 Sum_probs=211.3
Q ss_pred CCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHh
Q 001980 96 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR 175 (987)
Q Consensus 96 ~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~ 175 (987)
..+.|+++|++++|+.. ...+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...++
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 35679999999999742 23589999999999999999999999999999999999999999999999999888888888
Q ss_pred cceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 176 DQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+.|+|++|+|++|++|++||+..... ...+++..+.+..++.+.+..+|.|+++.+++.+.+||||||||++|||||++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 89999999999999999999975432 23455666777778888899999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhh-hhHHHH
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA-GAYASL 333 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~ 333 (987)
+|+++||||||++||+.+++.+.+.+.++.++.|+|++||+++.+..||+|++|++|++++.|+++++.+.. +.+..+
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHH
Confidence 999999999999999999999999998876789999999999999889999999999999999999987653 344443
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-45 Score=361.28 Aligned_cols=222 Identities=34% Similarity=0.565 Sum_probs=193.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC---HHHHh
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSLR 820 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---l~~lR 820 (987)
.|+++||+.+||+ +..+|+||||+|++||.|||+|+||||||||+++|.|+.+|++|+|.++|.++..++ ++.+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999985 346999999999999999999999999999999999999999999999999998888 66789
Q ss_pred cccEEEcccccccc-ccHHHHhccCCCC-----------C---CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCC
Q 001980 821 LKIGLVQQEPALFA-ASIFDNIAYGKEG-----------A---TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLS 885 (987)
Q Consensus 821 ~~i~~VpQdp~lF~-gTIreNL~~~~~~-----------~---sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 885 (987)
++||+|+|++.|-. -|+.+|+..|+-. . ......+||+++++.++.-. +..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCC
Confidence 99999999999875 5899999766421 2 23456788899999887643 345799
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEe
Q 001980 886 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQ 962 (987)
Q Consensus 886 gGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~ 962 (987)
|||+||++|||||.++|+|++-|||||+|||.+.+.|++.|++.. .|.|||+.-|.++..+. ||||+-|++|+|+-.
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999999865 57999999999999865 699999999999999
Q ss_pred cChhHHhcCCCchHHHHHH
Q 001980 963 GSHSELVSRPDGAYSRLLQ 981 (987)
Q Consensus 963 Gt~~eLl~~~~g~f~~l~~ 981 (987)
|+++||- +..+...|.
T Consensus 230 g~~~el~---~~~~~~iYg 245 (258)
T COG3638 230 GPASELT---DEALDEIYG 245 (258)
T ss_pred CChhhhh---HHHHHHHhc
Confidence 9999963 234444443
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=401.53 Aligned_cols=220 Identities=34% Similarity=0.553 Sum_probs=186.7
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHh
Q 001980 100 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WLR 175 (987)
Q Consensus 100 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~ 175 (987)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996321 24699999999999999999999999999999999999999999999999999887654 357
Q ss_pred cceEEEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 176 DQIGLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
++|+|+||++.+|+ .|++||+.++... ....+..+ ...+.++.+ |+.......+.+||||||||++||||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~v~e~l~~v--gL~~~~~~~~~~LSgGqkQRV~IARA 154 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR-----KVTELLALV--GLGDKHDSYPSNLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 78999999999996 5999999985321 12222111 112233333 55556677788999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|+.+|++||||||||+||+.+++.+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~ 231 (343)
T TIGR02314 155 LASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH 231 (343)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcC
Confidence 9999999999999999999999999999999853 8999999999999866 899999999999999999998764
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=384.51 Aligned_cols=212 Identities=39% Similarity=0.629 Sum_probs=185.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccC-----CCCCceEEECCccCCCCC--HH
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFY-----DPTAGKVMIDGKDIRRLN--LK 817 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~-----~p~~G~I~idG~di~~i~--l~ 817 (987)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.++|.++.+.+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999964 35999999999999999999999999999999999999 999999999999998776 66
Q ss_pred HHhcccEEEccccccccccHHHHhccCCCC---C----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 818 SLRLKIGLVQQEPALFAASIFDNIAYGKEG---A----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 818 ~lR~~i~~VpQdp~lF~gTIreNL~~~~~~---~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
.+|++++|+||++.+|..|++||+.++... . .++++.++++..++.+.....++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 788999999999999988999999864321 1 13456777888887665543321 3579999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999999999999999999999999999998655899999999998865 899999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=382.10 Aligned_cols=219 Identities=53% Similarity=0.826 Sum_probs=200.1
Q ss_pred ccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHh
Q 001980 741 IRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLR 820 (987)
Q Consensus 741 ~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR 820 (987)
..|.|+++|++++|+++...++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+...+|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45689999999999753234699999999999999999999999999999999999999999999999999888888888
Q ss_pred cccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 001980 821 LKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900 (987)
Q Consensus 821 ~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr 900 (987)
++++|+||++.+|.+|+++|+.++.......++++..+...+.++++.+|.|+++.+.....+||||||||++|||||++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999987655445556666667788889999999899998999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEE
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRI 959 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~i 959 (987)
+|++|||||||++||+++...+.+.|++..+++|+|+|||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999998777899999999999988999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=376.74 Aligned_cols=213 Identities=35% Similarity=0.517 Sum_probs=180.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE---eCCCCCHHHHh
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV---DIKTLQLRWLR 175 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~---~~~~~~~~~~~ 175 (987)
.|.++|+++.|+. ..+++|||++|+.||.+|+.|||||||||||++|+|+..|+.|.|.+||. |.+..... .
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--D 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--h
Confidence 3788999999974 34899999999999999999999999999999999999999999999999 55553332 3
Q ss_pred cceEEEcCCCCCchh-cHHHHHhcCCCC--------CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHH
Q 001980 176 DQIGLVNQEPALFAT-TILENILYGKPE--------ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqR 246 (987)
++||||+|+..||.- ||++||.||.+- ....++.+.++.+++...- ...+.+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la-----------~ryP~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLA-----------DRYPAQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchh-----------hcCchhcChHHHHH
Confidence 579999999999965 999999999731 1123344444444443333 44566999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
|||||||...|++||||||+++||++.+..+.+.|.++.. |.|+++||||.++... ||||++|++|+|...|+++|+
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999999988753 8999999999998755 899999999999999999999
Q ss_pred HHhh
Q 001980 324 IAKA 327 (987)
Q Consensus 324 ~~~~ 327 (987)
..+.
T Consensus 226 ~~~P 229 (345)
T COG1118 226 YDHP 229 (345)
T ss_pred hcCC
Confidence 7653
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=372.38 Aligned_cols=217 Identities=30% Similarity=0.559 Sum_probs=189.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++|+|.++ +||+||||+|++|+.+||+||||||||||+++++|+.+|++|+|.++|.++++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 59999999999643 59999999999999999999999999999999999999999999999998876543 5789
Q ss_pred EEEccccc---cccccHHHHhccCCCC----------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 824 GLVQQEPA---LFAASIFDNIAYGKEG----------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 824 ~~VpQdp~---lF~gTIreNL~~~~~~----------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
|||||... -|.-||+|=+.+|... .+.+++.+||+.+++.++.. .++|+ |||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-------r~i~~----LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-------RQIGE----LSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-------Ccccc----cCcHHHH
Confidence 99999663 4788999999876422 12478999999999998864 34664 9999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~-~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
|+.|||||+++|++|+|||||+++|+.++..+.+.|.++.+ |||||+|+|+++.+.. +|+|+.| +++++..|+|++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhc
Confidence 99999999999999999999999999999999999999874 8999999999999876 7999988 5788999999999
Q ss_pred hcCCCchHHHHH
Q 001980 969 VSRPDGAYSRLL 980 (987)
Q Consensus 969 l~~~~g~f~~l~ 980 (987)
+.. ..+.+.+
T Consensus 226 ~~~--~~l~~~~ 235 (254)
T COG1121 226 LTE--ENLEKAF 235 (254)
T ss_pred cCH--HHHHHHh
Confidence 864 3344444
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=341.94 Aligned_cols=211 Identities=35% Similarity=0.566 Sum_probs=189.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|.+++|.|+|..-| =.++++|++||+|||+||||||||||++++.||..|.+|+|.|+|+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56889999995332 468899999999999999999999999999999999999999999999887764 47799
Q ss_pred EEcccccccc-ccHHHHhccCCCC------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFA-ASIFDNIAYGKEG------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~-gTIreNL~~~~~~------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
+++||..||. -||++|+.+|... ...+.+..++.++|+.++.++||+ .||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 9999999996 5999999988531 235678899999999999999994 599999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
|+|+-+||+||||.|+||+.-.+.+...+.+.. ++.|+++|||.++.+.. +|+++++++|||++.|.-+++++.++
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 999999999999999999999999999998876 47899999999998765 79999999999999999999997744
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-44 Score=364.56 Aligned_cols=206 Identities=38% Similarity=0.581 Sum_probs=176.4
Q ss_pred EEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH---H-
Q 001980 745 IELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---L- 819 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~---l- 819 (987)
++++||+..|..... .++|+++||+|++||.|||+||||||||||+++|.++..|++|.|.++|.|+..++-+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 679999999964322 36999999999999999999999999999999999999999999999999999998544 3
Q ss_pred hcccEEEcccccccc-ccHHHHhccCC--CCC----CHHHHHHHHHHcCchhhHh-hCCCcCCCccCCCCCCCChhHHHH
Q 001980 820 RLKIGLVQQEPALFA-ASIFDNIAYGK--EGA----TEAEVVEAARAANVHGFVS-ALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 820 R~~i~~VpQdp~lF~-gTIreNL~~~~--~~~----sd~ei~~al~~a~l~~~i~-~lp~gldt~vge~G~~LSgGQrQr 891 (987)
|++||+|+|+..|+. -|++||+.++. ... ..+...+.++..++.+... ..| ..||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 567999999999875 59999998531 111 2344566666777765544 333 4699999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCCEEEE
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVE 961 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive 961 (987)
+||||||+.+|+|++.||||.+||.+|.+.|++.+++.. .++|+|+|||+......|||++.|.+|++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999985 3789999999999999999999999999543
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=384.36 Aligned_cols=223 Identities=33% Similarity=0.530 Sum_probs=194.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC---CCCceEEECCccCCCCCHHHHh
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD---PTAGKVMIDGKDIRRLNLKSLR 820 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~l~~lR 820 (987)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999963 359999999999999999999999999999999999985 6899999999999988888889
Q ss_pred cccEEEccccccccccHHHHhccCCC--------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 821 LKIGLVQQEPALFAASIFDNIAYGKE--------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 821 ~~i~~VpQdp~lF~gTIreNL~~~~~--------~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
++++|+||+|.+|..|+++|+.++.. ...++++.++++.+++.+++..+ ..+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHH
Confidence 99999999999999999999976521 11233567778888886655432 2345568999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
+|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999999877899999999999886 5899999999999999999999866
Q ss_pred CCchH
Q 001980 972 PDGAY 976 (987)
Q Consensus 972 ~~g~f 976 (987)
+...|
T Consensus 232 ~~~~~ 236 (246)
T PRK14269 232 PKQEK 236 (246)
T ss_pred CCcHH
Confidence 44333
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-44 Score=377.74 Aligned_cols=219 Identities=35% Similarity=0.561 Sum_probs=201.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|+.. ..++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 48999999999743 23589999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 179 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 179 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
+|++|++.+++.|++||+.+... ...+++.++++..++.+.+..+|.|+++..++.+.+||||||||++|||||+.+|+
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 159 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK 159 (221)
T ss_pred EEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999986543 34567777888888888999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecC
Q 001980 259 ILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT 319 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 319 (987)
++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999999999998877899999999999998899999999999998775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-44 Score=381.05 Aligned_cols=223 Identities=34% Similarity=0.602 Sum_probs=193.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEccccccccccHHHHhccCCC--CCCHHHHHHHHHHcCch-hhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 001980 824 GLVQQEPALFAASIFDNIAYGKE--GATEAEVVEAARAANVH-GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900 (987)
Q Consensus 824 ~~VpQdp~lF~gTIreNL~~~~~--~~sd~ei~~al~~a~l~-~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr 900 (987)
+|+||++.+|..|+++|+.++.. ...++++.+.++..++. ++. ......||||||||++||||+++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYA-----------TRDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHh-----------hCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999986532 12244566677776664 222 22345799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAYS 977 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~ 977 (987)
+|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|++++++..+...|.
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 228 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHH
Confidence 999999999999999999999999999875 37999999999999875 899999999999999999999876554565
Q ss_pred HHH
Q 001980 978 RLL 980 (987)
Q Consensus 978 ~l~ 980 (987)
+.+
T Consensus 229 ~~~ 231 (241)
T PRK14250 229 KLF 231 (241)
T ss_pred HHH
Confidence 544
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-44 Score=376.39 Aligned_cols=219 Identities=43% Similarity=0.708 Sum_probs=198.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|++. ..++|+|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 48899999999742 24589999999999999999999999999999999999999999999999998777776777889
Q ss_pred EEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 179 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 179 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
+|++|++++++.|++||+.++.+....+++.+.++..++.+.+...|.|++|.+.....+||||||||++|||||+.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999988899999988754444556677788888888888999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEec
Q 001980 259 ILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETG 318 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g 318 (987)
++||||||++||+.++..+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999986568999999999988779999999999998654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-44 Score=390.13 Aligned_cols=217 Identities=33% Similarity=0.565 Sum_probs=192.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|++....++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999642123599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcccc--ccccccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 824 GLVQQEP--ALFAASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 824 ~~VpQdp--~lF~gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
+|+||+| .++..|+++||.++.. ..+ ++.+.++++.+++.++....| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 3667899999987532 122 345678888888877655443 47999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcC
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998753 7999999999999888999999999999999999998765
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-44 Score=372.28 Aligned_cols=206 Identities=34% Similarity=0.575 Sum_probs=184.5
Q ss_pred CccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH
Q 001980 740 TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 819 (987)
Q Consensus 740 ~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l 819 (987)
+..+.|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+
T Consensus 2 ~~~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 2 PEHGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 345679999999999642 2369999999999999999999999999999999999999999999999999998888889
Q ss_pred hcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 820 RLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 820 R~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
|++++|+||+|.+|++|+++|+.+.. ..+++++.++++ +......|||||+||++||||++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~-~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~ 141 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFD-EYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALL 141 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccC-CCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999997643 345555555443 23456689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSH 965 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~ 965 (987)
++|++|||||||++||+++...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+|
T Consensus 142 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 142 KRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999999998778999999999999988999999999999998875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=426.02 Aligned_cols=263 Identities=19% Similarity=0.296 Sum_probs=220.1
Q ss_pred CccCHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC---------CCCCC--------
Q 001980 32 GVTDGGKAFTA-IF---SAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ---------DPTNG-------- 90 (987)
Q Consensus 32 ~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---------~~~~~-------- 90 (987)
|.+|.|..+.. +. ++.....|+..+...+..++++.++.+|+.++++.+++... ...+.
T Consensus 358 g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (659)
T TIGR00954 358 LEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSN 437 (659)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 67888876552 22 24455789999999999999999999999999975332110 00000
Q ss_pred -----CcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 001980 91 -----RCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 165 (987)
Q Consensus 91 -----~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~ 165 (987)
.......+.|+++|++|+|+++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 438 ~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-- 513 (659)
T TIGR00954 438 LVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-- 513 (659)
T ss_pred ccccccccccCCCeEEEEeeEEECCCC--CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC--
Confidence 0001123469999999999742 3589999999999999999999999999999999999999999999875
Q ss_pred CCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCC-------CCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCC
Q 001980 166 IKTLQLRWLRDQIGLVNQEPALFATTILENILYGK-------PEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQ 238 (987)
Q Consensus 166 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~ 238 (987)
+++++||||+|++|++|++|||.++. +..+++++.++++.+++.+++.. |.|++|..+ .+.+
T Consensus 514 ---------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~ 582 (659)
T TIGR00954 514 ---------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDV 582 (659)
T ss_pred ---------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccC
Confidence 46899999999999999999999874 23456788889999999988877 889999876 5779
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeC
Q 001980 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQ 311 (987)
Q Consensus 239 LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~ 311 (987)
||||||||++|||||+++|+++|||||||+||+++++.+.+.+++. ++|+|+||||++.++.||++++|+.
T Consensus 583 LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 583 LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999998774 8999999999999999999999973
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=391.82 Aligned_cols=220 Identities=37% Similarity=0.605 Sum_probs=199.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+.+|. +..+++|+||+|++||.++++|||||||||++++|.||..|++|+|.+||.|+..++++ ++.|
T Consensus 5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 699999999995 44699999999999999999999999999999999999999999999999999999886 4889
Q ss_pred EEEcccccccc-ccHHHHhccCCC---CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKE---GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~---~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
++|+|+..||. .||++|+.||.. ...+ +.+.++++.+++.++-.+.| ..|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHH
Confidence 99999999995 799999999854 1222 36789999999999877766 46999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhh-hccCEEEEEeCCEEEEecChhHHhcCC
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRP 972 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti-~~~D~Iivl~~G~ive~Gt~~eLl~~~ 972 (987)
|||..+|++|+||||-|+||.+-...++..+++..+ |.|.|+|||+-+.. .-+|||+||.+|+|...|+|+|+..+|
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 999999999999999999999999999999988653 88999999999875 457999999999999999999999998
Q ss_pred CchHHHH
Q 001980 973 DGAYSRL 979 (987)
Q Consensus 973 ~g~f~~l 979 (987)
...|-.-
T Consensus 229 ~~~fVA~ 235 (352)
T COG3842 229 ATRFVAD 235 (352)
T ss_pred chHHHHH
Confidence 8777543
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=397.60 Aligned_cols=223 Identities=39% Similarity=0.624 Sum_probs=190.1
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH---Hh
Q 001980 745 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---LR 820 (987)
Q Consensus 745 I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~---lR 820 (987)
|+++||+++|+.+. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996211 346999999999999999999999999999999999999999999999999999887654 57
Q ss_pred cccEEEcccccccc-ccHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 821 LKIGLVQQEPALFA-ASIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 821 ~~i~~VpQdp~lF~-gTIreNL~~~~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
++|+||||++.+|. .|+++|+.++.. ..++ +++.+.++..++.++... ...+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADR-----------YPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 89999999999886 799999986521 1222 345666777766554432 23579999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
|||||+++|+||||||||++||+.+...+++.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 7899999999999876 89999999999999999999987
Q ss_pred CCCchHHH
Q 001980 971 RPDGAYSR 978 (987)
Q Consensus 971 ~~~g~f~~ 978 (987)
++...+.+
T Consensus 231 ~~~~~~~~ 238 (343)
T PRK11153 231 HPKHPLTR 238 (343)
T ss_pred CCCcHHHH
Confidence 65444433
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=396.48 Aligned_cols=219 Identities=33% Similarity=0.552 Sum_probs=193.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|.+ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.+ |++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999953 3589999999999999999999999999999999999999999999999999887653 6889
Q ss_pred EEEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+||+|++.+|. .|++||+.++.. ..+ ++++.++++..++.++..+.| ..||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 599999997632 122 346677888888876654443 479999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
||+++|++||||||||+||+.+...+++.|++..+ ++|+|+|||+++.+.. ||+|+||++|+|++.|+|+++.+++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999998764 7899999999998755 89999999999999999999998877
Q ss_pred chHHH
Q 001980 974 GAYSR 978 (987)
Q Consensus 974 g~f~~ 978 (987)
..|..
T Consensus 230 ~~~~a 234 (351)
T PRK11432 230 SRFMA 234 (351)
T ss_pred chHHH
Confidence 65543
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-44 Score=358.41 Aligned_cols=218 Identities=31% Similarity=0.475 Sum_probs=179.8
Q ss_pred cEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC-HHHHhc
Q 001980 99 NIEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ-LRWLRD 176 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~~~ 176 (987)
.++++|+++.|+... ..++++||||+|.+||+++|+|+||||||||+++|+|+.+|++|+|.++|.++.... ....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999998532 124899999999999999999999999999999999999999999999998776543 335677
Q ss_pred ceEEEcCCCC--Cchh-cHHHHHhcCCCC----CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 177 QIGLVNQEPA--LFAT-TILENILYGKPE----ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 177 ~i~~v~Q~~~--l~~~-tv~eni~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
.|-+|+|||. |-+- ||++-|.-+... ...+++.++++.+++.+ ....+++.+|||||+|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~----------~~l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPP----------SFLDRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCH----------HHHhcCchhcChhHHHHHHH
Confidence 8999999995 3333 787776543221 12233344443333321 34556677999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
||||..+|++||||||||+||+..+..|++.+.++++ +-|.|+||||+..+.+ ||||+||++|+++|.++.+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999999999999999999998865 6799999999999988 899999999999999999998776
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=396.34 Aligned_cols=219 Identities=32% Similarity=0.520 Sum_probs=193.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|++ +.++|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++.+++.. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3899999999942 23599999999999999999999999999999999999999999999999999887764 4789
Q ss_pred EEEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+||||++.+|. .|+++||.++.. ..+ ++++.++++..++.++..+.| .+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999995 699999987643 122 245678888888887766555 479999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
||+++|++||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+. .||+|++|++|++++.|+|+++++++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999999998754 789999999999775 589999999999999999999998876
Q ss_pred chHH
Q 001980 974 GAYS 977 (987)
Q Consensus 974 g~f~ 977 (987)
..|.
T Consensus 228 ~~~~ 231 (356)
T PRK11650 228 STFV 231 (356)
T ss_pred cHHH
Confidence 6554
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-44 Score=361.34 Aligned_cols=197 Identities=38% Similarity=0.572 Sum_probs=176.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.+++++|+.+|.+ ..||+|+||+|++||.|+|+||||||||||++++.|+.+|++|+|.++|.++... ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4899999999964 4699999999999999999999999999999999999999999999999988543 4679
Q ss_pred EEEcccccccc-ccHHHHhccCCCCC------CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKEGA------TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~~~------sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+||+|++.||. -||++|+.++.... ..+...+.++.+|+.+|-+..| ..||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHH
Confidence 99999999998 69999999875431 2346788999999999988777 469999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeC--CEE
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQD--GRI 959 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~-~~D~Iivl~~--G~i 959 (987)
||+.+|+||+||||.+|||+.|...+|+-+.+.. .++||++|||+++... -+|||+||.+ |+|
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 9999999999999999999999999999998875 3689999999998754 5799999999 555
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=391.28 Aligned_cols=222 Identities=27% Similarity=0.460 Sum_probs=188.2
Q ss_pred ccEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC------
Q 001980 98 GNIEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL------ 169 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~------ 169 (987)
..|+++|++|+|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3599999999997421 23599999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhcceEEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccC
Q 001980 170 ----------QLRWLRDQIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYS-TQVGE 234 (987)
Q Consensus 170 ----------~~~~~~~~i~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~ 234 (987)
....++++|+||+|+| ++|+.|++|||.++... .+.++..+ . ..+.++.+ |+. ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~--~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---L--AKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---H--HHHHHHHc--CCChhHhcC
Confidence 3456788999999998 78889999999987421 22222211 1 12344554 664 46788
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccc-cCCEEEEEeCC
Q 001980 235 RGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIR-NVDTVAVIQQG 312 (987)
Q Consensus 235 ~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G 312 (987)
.+.+||||||||++|||||+++|++|||||||++||+.+++.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999998874 5899999999999875 59999999999
Q ss_pred EEEEecChHHHHHh
Q 001980 313 QVVETGTHEELIAK 326 (987)
Q Consensus 313 ~i~~~g~~~~l~~~ 326 (987)
++++.|+++++...
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999998654
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=396.56 Aligned_cols=218 Identities=33% Similarity=0.520 Sum_probs=191.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.. ++.+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 3589999999999999999999999999999999999999999999999999887764 6789
Q ss_pred EEEcccccccc-ccHHHHhccCCCC--CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKEG--AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~~--~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+||||++.+|. .|++||+.++... .+ ++.+.++++..++.++..+. ..+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~-----------~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKY-----------PGQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCC-----------hhhCCHHHHHHHHHHH
Confidence 99999999996 6999999876321 12 34566777777776655443 3579999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
||+++|++||||||||+||+.+...+++.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++++++.
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~ 227 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPA 227 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999998754 7899999999998754 89999999999999999999998877
Q ss_pred chHH
Q 001980 974 GAYS 977 (987)
Q Consensus 974 g~f~ 977 (987)
..|.
T Consensus 228 ~~~~ 231 (353)
T TIGR03265 228 TPFV 231 (353)
T ss_pred CHHH
Confidence 6653
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=381.73 Aligned_cols=225 Identities=32% Similarity=0.509 Sum_probs=192.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~l 816 (987)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5999999999963 3599999999999999999999999999999999999997 48999999999863 345
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCCC---C----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKEG---A----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~---~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|++++|+||++.+|..|++|||.++... . .++.+.++++.+++.+.+ ++.+++. ..+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNTN----ALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhCC----cccCCHHHH
Confidence 6788999999999999999999999865311 1 134566777777765433 2344554 457999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|++|||||||++||+.+...+++.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999855 899999999999999999999
Q ss_pred hcCCCchHHH
Q 001980 969 VSRPDGAYSR 978 (987)
Q Consensus 969 l~~~~g~f~~ 978 (987)
.+++.-.|.+
T Consensus 237 ~~~~~~~~~~ 246 (254)
T PRK14273 237 FFNPKNTKTE 246 (254)
T ss_pred HhCCCChHHH
Confidence 8765555543
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=377.37 Aligned_cols=217 Identities=33% Similarity=0.533 Sum_probs=183.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH---HHHhc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL---RWLRD 176 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~~ 176 (987)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468999999973 358999999999999999999999999999999999999999999999999877654 46778
Q ss_pred ceEEEcCCCCCchh-cHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 177 QIGLVNQEPALFAT-TILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~-tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
.|+|++|++.+|+. |++||+.++.. ....++..+. +.+.++.+ |+.........+||||||||++||||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI-----VLEKLEAV--GLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHH-----HHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 89999999999886 99999987632 1122222111 12233433 55555567778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|+.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999998753 7999999999998865 899999999999999999887643
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=387.00 Aligned_cols=218 Identities=33% Similarity=0.530 Sum_probs=185.7
Q ss_pred EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC--HHHHh
Q 001980 745 IELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN--LKSLR 820 (987)
Q Consensus 745 I~f~~vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~--l~~lR 820 (987)
|+++||+++|++.. ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999996421 136999999999999999999999999999999999999999999999999998754 45788
Q ss_pred cccEEEcccc--ccccccHHHHhccCCC--CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 821 LKIGLVQQEP--ALFAASIFDNIAYGKE--GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 821 ~~i~~VpQdp--~lF~gTIreNL~~~~~--~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
++++||||+| .+|+.|+++||.++.. ..+++ .+.++++.+++.. .+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHHH
Confidence 9999999998 5789999999986521 23333 3566677776640 0112233457999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHh
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl 969 (987)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|||+|||+++.+. .||||++|++|++++.|++++++
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998753 789999999999885 58999999999999999999987
Q ss_pred cC
Q 001980 970 SR 971 (987)
Q Consensus 970 ~~ 971 (987)
+.
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 53
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=378.60 Aligned_cols=223 Identities=36% Similarity=0.578 Sum_probs=190.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-----CceEEECCccCCCC--CHH
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT-----AGKVMIDGKDIRRL--NLK 817 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~-----~G~I~idG~di~~i--~l~ 817 (987)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 35899999999999999999999999999999999999998 99999999998763 456
Q ss_pred HHhcccEEEccccccccccHHHHhccCCC--C-CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 818 SLRLKIGLVQQEPALFAASIFDNIAYGKE--G-AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 818 ~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~-~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
.+|++++|+||++.+|..|+++|+.++.. . .+ ++++.++++..++.+++.. -+ .....+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~----~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD---RL----HDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh---Hh----hCCcccCCHHHHH
Confidence 77899999999999999999999976421 1 11 2456777888887644321 12 2334579999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999998865 8999999999999999999998
Q ss_pred cCCCchHH
Q 001980 970 SRPDGAYS 977 (987)
Q Consensus 970 ~~~~g~f~ 977 (987)
..+...+.
T Consensus 232 ~~~~~~~~ 239 (247)
T TIGR00972 232 TNPKEKRT 239 (247)
T ss_pred hCCCChHH
Confidence 76544443
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=380.09 Aligned_cols=225 Identities=33% Similarity=0.558 Sum_probs=192.5
Q ss_pred cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCC--C
Q 001980 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--L 814 (987)
Q Consensus 742 ~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i 814 (987)
.+.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 457999999999963 359999999999999999999999999999999999986 579999999999863 4
Q ss_pred CHHHHhcccEEEccccccccccHHHHhccCCC---CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 001980 815 NLKSLRLKIGLVQQEPALFAASIFDNIAYGKE---GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 887 (987)
Q Consensus 815 ~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~---~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 887 (987)
+...+|++++|+||++.+|..|+++|+.++.. ..+ +++++++++.+++.+.+.. ...+...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD-------KLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH-------HHhcCCCCCCHH
Confidence 56678999999999999999999999986532 122 2456777888877543322 233445679999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChh
Q 001980 888 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHS 966 (987)
Q Consensus 888 QrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~ 966 (987)
||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777899999999998865 8999999999999999999
Q ss_pred HHhcCCCchH
Q 001980 967 ELVSRPDGAY 976 (987)
Q Consensus 967 eLl~~~~g~f 976 (987)
++...+...|
T Consensus 241 ~~~~~~~~~~ 250 (260)
T PRK10744 241 TIFTKPAKKQ 250 (260)
T ss_pred HHHhCCCcHH
Confidence 9987644433
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=374.62 Aligned_cols=219 Identities=51% Similarity=0.837 Sum_probs=194.1
Q ss_pred CCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHh
Q 001980 96 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR 175 (987)
Q Consensus 96 ~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~ 175 (987)
..+.++++|++++|++....++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+...++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 34569999999999753234589999999999999999999999999999999999999999999999988777777777
Q ss_pred cceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 176 DQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
++++|++|++.+|+.|++||+.++.......++.+......+.+.++.+|.|+++.+.+.+.+||||||||++|||||++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 88999999999999999999998754333444444444556678888898899998999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEE
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQV 314 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i 314 (987)
+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999988767899999999999988999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=380.79 Aligned_cols=221 Identities=33% Similarity=0.567 Sum_probs=190.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~l 816 (987)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4999999999953 359999999999999999999999999999999999975 589999999999875 345
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC--C-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--G-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|++++|+||++.+|..|+++|+.++.. . ..++++.++++.+++.+.+.. .......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHH
Confidence 678899999999999999999999986421 1 123456777888877654432 12344567999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|||++||+++.+.. ||+|++|++|+|++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998767899999999999855 899999999999999999999
Q ss_pred hcCCCc
Q 001980 969 VSRPDG 974 (987)
Q Consensus 969 l~~~~g 974 (987)
.+.+..
T Consensus 236 ~~~~~~ 241 (253)
T PRK14242 236 FTRPRE 241 (253)
T ss_pred HcCCCc
Confidence 876443
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=393.73 Aligned_cols=207 Identities=36% Similarity=0.574 Sum_probs=183.4
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH----hcccEEEcccccccc-
Q 001980 760 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL----RLKIGLVQQEPALFA- 834 (987)
Q Consensus 760 ~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l----R~~i~~VpQdp~lF~- 834 (987)
.++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|+|||.|+..++...+ |++++||||++.+|.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 358999999999999999999999999999999999999999999999999999998887 789999999999997
Q ss_pred ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 001980 835 ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLD 908 (987)
Q Consensus 835 gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLD 908 (987)
.|+++|+.++.. ..+ .+.+.++++.+++.++..+.| .+||||||||++|||||+++|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 599999986532 112 345677888888876655443 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhh-hccCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001980 909 EATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPDGAYS 977 (987)
Q Consensus 909 EaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti-~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~ 977 (987)
||||+||+.+.+.+++.+.+.. .++|+|+|||+++.+ ..||+|++|++|++++.|+|+++++++...|.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 9999999999999999999874 379999999999986 45899999999999999999999987655554
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=382.56 Aligned_cols=213 Identities=33% Similarity=0.588 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999632 3599999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcccc--ccccccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 824 GLVQQEP--ALFAASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 824 ~~VpQdp--~lF~gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
+|+||+| .+|..|+++|+.++.. ..+ ++++.++++.+++.++..+.| ..||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 6788999999986522 122 245677888888876655444 36999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHh
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl 969 (987)
|||+++|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999999999999999999999999999999875 4799999999999985 58999999999999999987653
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=394.70 Aligned_cols=217 Identities=27% Similarity=0.430 Sum_probs=184.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ +..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...++. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3899999999942 23589999999999999999999999999999999999999999999999999887664 3689
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+||+|++.+|+. ||+|||.|+... ....+..+ .+.+.++.+ |++......+.+|||||||||+|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~QRvalARAL~~ 151 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEE-----RVAEAARIL--ELEPLLDRKPRELSGGQRQRVAMGRAIVR 151 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999965 999999987431 11111111 112233333 55555667778999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++.++
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 152 EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 9999999999999999999999999998753 8999999999998765 899999999999999999998764
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=374.87 Aligned_cols=213 Identities=36% Similarity=0.544 Sum_probs=183.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999963 359999999999999999999999999999999999999999999999999876653 367899
Q ss_pred EEcccccccc-ccHHHHhccCCCC--C----C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 825 LVQQEPALFA-ASIFDNIAYGKEG--A----T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 825 ~VpQdp~lF~-gTIreNL~~~~~~--~----s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
|+||+|.+|. .|+++|+.++... . . ++++.++++..++.++... ...+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR-----------YPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhc-----------ChhhCCHHHHHHHH
Confidence 9999999885 6999999865321 1 1 2345566677766544332 23579999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999998755 89999999999999999999986
Q ss_pred CCC
Q 001980 971 RPD 973 (987)
Q Consensus 971 ~~~ 973 (987)
.+.
T Consensus 227 ~~~ 229 (239)
T cd03296 227 HPA 229 (239)
T ss_pred CCC
Confidence 543
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=376.46 Aligned_cols=213 Identities=31% Similarity=0.556 Sum_probs=182.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH-hccc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-RLKI 823 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l-R~~i 823 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999963 359999999999999999999999999999999999999999999999999988876654 6789
Q ss_pred EEEccccccccc-cHHHHhccCCCCC------------C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 001980 824 GLVQQEPALFAA-SIFDNIAYGKEGA------------T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 886 (987)
Q Consensus 824 ~~VpQdp~lF~g-TIreNL~~~~~~~------------s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 886 (987)
+|+||++.+|.+ |+++|+.++.... . .+.+.++++..++ +.........|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL-----------ADLADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCc-----------cchhhCChhhCCH
Confidence 999999999986 9999997653211 0 1123344444443 3333344567999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecC
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGS 964 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt 964 (987)
|||||++|||||+++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999999999875 68899999999999866 89999999999999999
Q ss_pred hhHHhcC
Q 001980 965 HSELVSR 971 (987)
Q Consensus 965 ~~eLl~~ 971 (987)
+++++.+
T Consensus 227 ~~~~~~~ 233 (236)
T cd03219 227 PDEVRNN 233 (236)
T ss_pred HHHhccC
Confidence 9998764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=384.63 Aligned_cols=216 Identities=29% Similarity=0.541 Sum_probs=184.9
Q ss_pred EEEEeEEEECCCCCC--ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC----CCHHH
Q 001980 745 IELRHVDFAYPSRPD--VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR----LNLKS 818 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~--~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~----i~l~~ 818 (987)
|+++||+|+|+.... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999963311 259999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcccEEEcccc--ccccccHHHHhccCCC--CCCH----HHHHHHHHHcCch-hhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 819 LRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATE----AEVVEAARAANVH-GFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 819 lR~~i~~VpQdp--~lF~gTIreNL~~~~~--~~sd----~ei~~al~~a~l~-~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
+|++++||+|+| .+|..|+.+|+.++.. ..+. +++.++++.+++. ++.. ....+||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE-----------KSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc-----------CCcccCCHHHH
Confidence 899999999998 7899999999987532 1222 2355666666663 2322 33457999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~e 967 (987)
||++|||||+.+|+||||||||++||+.+...+.+.|+++. +++|||+|||+++.+. .||+|++|++|++++.|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998865 4789999999999885 599999999999999999999
Q ss_pred HhcC
Q 001980 968 LVSR 971 (987)
Q Consensus 968 Ll~~ 971 (987)
+..+
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 8754
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=382.84 Aligned_cols=216 Identities=32% Similarity=0.555 Sum_probs=191.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 38999999999642 23599999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEcccc--ccccccHHHHhccCCCC--CCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 824 GLVQQEP--ALFAASIFDNIAYGKEG--ATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 824 ~~VpQdp--~lF~gTIreNL~~~~~~--~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
+|+||+| .+++.|++|||.++... .+. +++.++++..++.+++...| ..||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 46778999999865221 222 34677788888877666544 37999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcC
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|||+.+|+||||||||++||+.+...+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++++.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998763 7899999999999988999999999999999999998764
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=379.60 Aligned_cols=225 Identities=31% Similarity=0.478 Sum_probs=190.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCC--CCCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIR--RLNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~--~i~l 816 (987)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999963 3599999999999999999999999999999999999987 4999999999997 4566
Q ss_pred HHHhcccEEEccccccccc-cHHHHhccCCC--C--CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 001980 817 KSLRLKIGLVQQEPALFAA-SIFDNIAYGKE--G--AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 887 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~g-TIreNL~~~~~--~--~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 887 (987)
..+|++++|+||++.+|.+ |+++|+.++.. . .. ++++.++++..++.+.+.. .+ .....+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~----~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD---RL----NDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh---hh----ccChhhCCHH
Confidence 6788999999999999975 99999976421 1 01 2345677777776544321 12 3345679999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChh
Q 001980 888 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHS 966 (987)
Q Consensus 888 QrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~ 966 (987)
||||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777999999999999865 8999999999999999999
Q ss_pred HHhcCCCchHHH
Q 001980 967 ELVSRPDGAYSR 978 (987)
Q Consensus 967 eLl~~~~g~f~~ 978 (987)
++++.+...|.+
T Consensus 234 ~~~~~~~~~~~~ 245 (253)
T PRK14267 234 KVFENPEHELTE 245 (253)
T ss_pred HHHhCCCcHHHH
Confidence 998664434444
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=372.88 Aligned_cols=211 Identities=27% Similarity=0.476 Sum_probs=182.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++||+++|++. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.... ..+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5789999999642 146999999999999999999999999999999999999999999999999987643 66788999
Q ss_pred EEccccccc-cccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALF-AASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF-~gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||++.+| ..|+++|+.++.. ..+ ++++.++++..++.+.. ++.+ .+||+|||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-------NKRA----RTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-------hChh----hhCCHHHHHHHHHHHH
Confidence 999999998 5799999975421 112 23456667776665443 3333 4699999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
++++|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999998777999999999999865 899999999999999999875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=381.43 Aligned_cols=217 Identities=33% Similarity=0.522 Sum_probs=190.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
-|+++||+++|++....++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743234599999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcccc--ccccccHHHHhccCCC--CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 824 GLVQQEP--ALFAASIFDNIAYGKE--GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 824 ~~VpQdp--~lF~gTIreNL~~~~~--~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
+|+||+| .++..|+.+||.++.. ..+++ .+.++++.+++.++.... ...||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 4678899999986422 23333 345677777776654432 347999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcC
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|||+++|+||||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998754 7899999999999988999999999999999999998865
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=391.83 Aligned_cols=218 Identities=35% Similarity=0.542 Sum_probs=190.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+. .|+++
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3889999999963 359999999999999999999999999999999999999999999999999987654 46789
Q ss_pred EEEcccccccc-ccHHHHhccCCC------CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKE------GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~------~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
+||||++.+|. .|++||+.++.. ..+ ++++.++++..++.++..+.| ..||||||||+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRv 145 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRV 145 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHH
Confidence 99999999997 599999987632 112 245667778887766554433 47999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
+|||||+++|++||||||||+||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+|++++
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998764 7899999999998765 8999999999999999999999
Q ss_pred cCCCchHH
Q 001980 970 SRPDGAYS 977 (987)
Q Consensus 970 ~~~~g~f~ 977 (987)
+++...|.
T Consensus 226 ~~p~~~~~ 233 (353)
T PRK10851 226 REPATRFV 233 (353)
T ss_pred hCccchHH
Confidence 88765553
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=384.73 Aligned_cols=217 Identities=30% Similarity=0.494 Sum_probs=183.9
Q ss_pred cEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCC----CHH
Q 001980 744 EIELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL----NLK 817 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~l~ 817 (987)
.|+++||+++|++.+ ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996432 13699999999999999999999999999999999999999999999999999753 346
Q ss_pred HHhcccEEEcccc--ccccccHHHHhccCCC--CCCHHH----HHHHHHHcCchhhHhhCCCcCCCc-cCCCCCCCChhH
Q 001980 818 SLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEAE----VVEAARAANVHGFVSALPNAYKTP-VGERGVQLSGGQ 888 (987)
Q Consensus 818 ~lR~~i~~VpQdp--~lF~gTIreNL~~~~~--~~sd~e----i~~al~~a~l~~~i~~lp~gldt~-vge~G~~LSgGQ 888 (987)
.+|++|+||||+| .+|..|+++||.++.. ..+.++ +.++++.++ +++. ....+.+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~~LSgGq 150 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLG-----------FSRDVMSQSPFQMSGGQ 150 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcC-----------CChhhhhCCcccCCHHH
Confidence 7899999999998 5888999999987532 223333 333444444 3322 234567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecCh
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSH 965 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~ 965 (987)
|||++|||||+.+|+||||||||++||+.+...+++.|+++. .++|||+|||+++.+. .||||++|++|++++.|++
T Consensus 151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~ 230 (286)
T PRK13646 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSP 230 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999874 4799999999999885 5899999999999999999
Q ss_pred hHHhcC
Q 001980 966 SELVSR 971 (987)
Q Consensus 966 ~eLl~~ 971 (987)
++++++
T Consensus 231 ~~~~~~ 236 (286)
T PRK13646 231 KELFKD 236 (286)
T ss_pred HHHHhC
Confidence 998765
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=374.32 Aligned_cols=216 Identities=37% Similarity=0.586 Sum_probs=185.8
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH---HHh
Q 001980 745 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLR 820 (987)
Q Consensus 745 I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~---~lR 820 (987)
|+++|++++|+++. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431 12699999999999999999999999999999999999999999999999999877654 357
Q ss_pred cccEEEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 821 LKIGLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 821 ~~i~~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
++++|+||++.+|. .|++||+.++.. ..+ ++++.++++..++.+..... ..+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAY-----------PAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcC-----------hhhCCHHHHHHHH
Confidence 89999999999997 699999975421 112 34566777777776554432 3579999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
|||||+++|++|||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+++++++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999875 37899999999999865 89999999999999999999875
Q ss_pred C
Q 001980 971 R 971 (987)
Q Consensus 971 ~ 971 (987)
.
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 4
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-43 Score=394.75 Aligned_cols=221 Identities=28% Similarity=0.494 Sum_probs=195.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++.+++...+|++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccccc-ccccHHHHhccCCCC----------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 824 GLVQQEPAL-FAASIFDNIAYGKEG----------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 824 ~~VpQdp~l-F~gTIreNL~~~~~~----------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
+||||++.+ |+.|++||+.++... ..++.+.++++.+++.++..+ + ...||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-------~----~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-------P----VTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-------C----hhhCCHHHHHHH
Confidence 999999987 688999999875421 123467888999998776543 2 346999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
+|||||+++|+||||||||++||+.+...+++.|+++. +++|||+++|+++.+. .||||++|++|++++.|+|++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999875 5789999999999995 589999999999999999999986
Q ss_pred CCCchHHHHH
Q 001980 971 RPDGAYSRLL 980 (987)
Q Consensus 971 ~~~g~f~~l~ 980 (987)
. ....+++
T Consensus 229 ~--~~l~~~~ 236 (402)
T PRK09536 229 A--DTLRAAF 236 (402)
T ss_pred c--HHHHHHh
Confidence 4 3455554
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=392.46 Aligned_cols=219 Identities=33% Similarity=0.543 Sum_probs=192.3
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC--ceEEECCccCCCCCHHHHh
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA--GKVMIDGKDIRRLNLKSLR 820 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~--G~I~idG~di~~i~l~~lR 820 (987)
|.|+++||+++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++ |+|.+||.++...+. .+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 67999999999963 359999999999999999999999999999999999999999 999999999987665 36
Q ss_pred cccEEEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 821 LKIGLVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 821 ~~i~~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
++|+||+|++.+|.. |+++||.++.. ..+ ++.+.++++..++.++..+.| .+||||||||++
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva 147 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA 147 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence 789999999999965 99999987532 122 234667788888877665554 479999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC---CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMR---GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~---~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
|||||+++|++||||||||+||+.+...+++.|++..+ +.|+|+|||+++.+.. ||+|+||++|++++.|+|+++.
T Consensus 148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999998754 6899999999998755 8999999999999999999999
Q ss_pred cCCCchHH
Q 001980 970 SRPDGAYS 977 (987)
Q Consensus 970 ~~~~g~f~ 977 (987)
+++...|.
T Consensus 228 ~~p~~~~~ 235 (362)
T TIGR03258 228 DAPADGFA 235 (362)
T ss_pred hCcCcHHH
Confidence 88765553
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=371.89 Aligned_cols=203 Identities=34% Similarity=0.568 Sum_probs=176.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH---HHhc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLRL 821 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~---~lR~ 821 (987)
|+++|++++|++. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999642 23599999999999999999999999999999999999999999999999999876543 4788
Q ss_pred ccEEEcccccccc-ccHHHHhccCCC------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 822 KIGLVQQEPALFA-ASIFDNIAYGKE------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 822 ~i~~VpQdp~lF~-gTIreNL~~~~~------~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
+++|+||++.+|. .|++||+.++.. ...++++.++++..++.++....| .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999886 599999986421 112456778888888876654433 3699999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEE
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRI 959 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~i 959 (987)
||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999874 47899999999999875 799999999985
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=392.10 Aligned_cols=216 Identities=30% Similarity=0.473 Sum_probs=184.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. +++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5899999999974 3489999999999999999999999999999999999999999999999999876653 4689
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+||+|++.+|+. ||+|||.|+... ....+..+ .+.+.++.+ |+.......+.+|||||||||+|||||+.
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~~--gl~~~~~r~~~~LSgGq~QRVaLARaL~~ 153 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQ-----RVKEALELV--DLAGFEDRYVDQISGGQQQRVALARALIL 153 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999999976 999999997431 11222111 112223333 55555567778999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+|++||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++++.. ||+|++|++|++++.|+++++..+
T Consensus 154 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 154 KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998853 8999999999998755 899999999999999999998764
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-43 Score=376.08 Aligned_cols=212 Identities=36% Similarity=0.591 Sum_probs=183.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC---HHHHhc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSLRL 821 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---l~~lR~ 821 (987)
|+++||+++|++ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999964 136999999999999999999999999999999999999999999999999998876 566889
Q ss_pred ccEEEcccccccc-ccHHHHhccCCCC--------------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 001980 822 KIGLVQQEPALFA-ASIFDNIAYGKEG--------------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 886 (987)
Q Consensus 822 ~i~~VpQdp~lF~-gTIreNL~~~~~~--------------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 886 (987)
+++|+||++.+|. .|+++|+.++... ..++++.++++..++.+.. ...+..|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA-----------YQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh-----------CCCcccCCH
Confidence 9999999998886 6999999764211 1123455666666654432 234467999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEec
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQG 963 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~G 963 (987)
|||||++|||||+++|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+. .||+|++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999875 3799999999999998 58999999999999999
Q ss_pred ChhHHh
Q 001980 964 SHSELV 969 (987)
Q Consensus 964 t~~eLl 969 (987)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 999874
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-43 Score=375.95 Aligned_cols=227 Identities=33% Similarity=0.503 Sum_probs=194.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCCCCHHH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRRLNLKS 818 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i~l~~ 818 (987)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999963 3599999999999999999999999999999999999974 6999999999999888888
Q ss_pred HhcccEEEccccccc-cccHHHHhccCCC--C------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 819 LRLKIGLVQQEPALF-AASIFDNIAYGKE--G------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 819 lR~~i~~VpQdp~lF-~gTIreNL~~~~~--~------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
+|++++|+||+|.+| ..|++||+.++.. . ..++++.++++..++.+.+. +.+++.+ .+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~~----~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK---DRLDAPA----GKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh---hhhcCCc----ccCCHHHH
Confidence 999999999999755 6799999976421 1 11345677888888765432 2234444 46999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999885 5899999999999999999999
Q ss_pred hcCCCchHHHHH
Q 001980 969 VSRPDGAYSRLL 980 (987)
Q Consensus 969 l~~~~g~f~~l~ 980 (987)
.+.+...+.+.+
T Consensus 233 ~~~~~~~~~~~~ 244 (250)
T PRK14247 233 FTNPRHELTEKY 244 (250)
T ss_pred HcCCccHHHHHH
Confidence 876554454433
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=382.08 Aligned_cols=219 Identities=37% Similarity=0.595 Sum_probs=187.2
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH----hc
Q 001980 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL----RL 821 (987)
Q Consensus 746 ~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l----R~ 821 (987)
.++|++++|.+ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45677777742 358999999999999999999999999999999999999999999999999988765543 46
Q ss_pred ccEEEcccccccc-ccHHHHhccCCC--CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 822 KIGLVQQEPALFA-ASIFDNIAYGKE--GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 822 ~i~~VpQdp~lF~-gTIreNL~~~~~--~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
+++|+||++.+|. .|+++|+.++.. .. .++++.++++..++.+++...| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 8999999999884 699999976421 11 1345677888888876665544 3699999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||||+++|+||||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999875 37999999999998755 899999999999999999999876
Q ss_pred CCchHHH
Q 001980 972 PDGAYSR 978 (987)
Q Consensus 972 ~~g~f~~ 978 (987)
+...|.+
T Consensus 252 ~~~~~~~ 258 (269)
T cd03294 252 PANDYVR 258 (269)
T ss_pred cCcHHHH
Confidence 6555544
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=378.00 Aligned_cols=224 Identities=33% Similarity=0.549 Sum_probs=191.7
Q ss_pred cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCC--C
Q 001980 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRR--L 814 (987)
Q Consensus 742 ~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i 814 (987)
.+.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999963 3599999999999999999999999999999999999975 89999999999875 3
Q ss_pred CHHHHhcccEEEccccccccccHHHHhccCCC--C-----C-CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 001980 815 NLKSLRLKIGLVQQEPALFAASIFDNIAYGKE--G-----A-TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 886 (987)
Q Consensus 815 ~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~-----~-sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 886 (987)
+...+|++++|+||+|.+|..|+++|+.++.. . . .++++.++++.+++.+++.. .....+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-------RLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCH
Confidence 55678899999999999999999999986421 1 1 13446777888887654421 12334567999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecCh
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSH 965 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~ 965 (987)
|||||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988777899999999999855 799999999999999999
Q ss_pred hHHhcCCCch
Q 001980 966 SELVSRPDGA 975 (987)
Q Consensus 966 ~eLl~~~~g~ 975 (987)
++++.++...
T Consensus 247 ~~~~~~~~~~ 256 (267)
T PRK14235 247 EKMFTNPDDP 256 (267)
T ss_pred HHHHhCCCCH
Confidence 9998654443
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-43 Score=387.11 Aligned_cols=225 Identities=27% Similarity=0.390 Sum_probs=189.7
Q ss_pred cEEEEeEEEECCCCC----------CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC
Q 001980 744 EIELRHVDFAYPSRP----------DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR 813 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~----------~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~ 813 (987)
-|+++|++++|+.+. ..++++||||+|++||.+||+|+||||||||+++|+|+++|++|+|++||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999998
Q ss_pred CCHHH---HhcccEEEcccc--ccc-cccHHHHhccCC----CCCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCC
Q 001980 814 LNLKS---LRLKIGLVQQEP--ALF-AASIFDNIAYGK----EGATEA----EVVEAARAANVHGFVSALPNAYKTPVGE 879 (987)
Q Consensus 814 i~l~~---lR~~i~~VpQdp--~lF-~gTIreNL~~~~----~~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge 879 (987)
++.+. +|++|+||+|+| .+| ..||.+||.++. +..+.+ .+.++++.+++.+. -+ ..
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~------~~----~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN------LI----NR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH------Hh----cC
Confidence 87543 678999999999 466 579999986431 123433 34456666666321 11 22
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeC
Q 001980 880 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQD 956 (987)
Q Consensus 880 ~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~ 956 (987)
....||||||||++|||||+.+|++||+||||++||..+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 3457999999999999999999999999999999999999999999998753 7899999999999976 899999999
Q ss_pred CEEEEecChhHHhcCCCchHHH
Q 001980 957 GRIVEQGSHSELVSRPDGAYSR 978 (987)
Q Consensus 957 G~ive~Gt~~eLl~~~~g~f~~ 978 (987)
|+|+|.|+++++++++...|.+
T Consensus 238 G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999999876666765
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-43 Score=391.49 Aligned_cols=218 Identities=38% Similarity=0.602 Sum_probs=193.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|.+ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++..++.+ ++++
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999963 3589999999999999999999999999999999999999999999999999887764 5789
Q ss_pred EEEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+||+|++.+|.. ||+|||.++.. ..+ ++++.++++..++.++..+.| ..||||||||+||||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999965 99999987642 122 235677888888887776655 469999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
||+++|++||||||||+||..+...+.+.|++..+ +.|+|+|||+++.+. -+|+|++|++|+|++.|+|+++++++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998764 789999999999875 489999999999999999999998876
Q ss_pred chHH
Q 001980 974 GAYS 977 (987)
Q Consensus 974 g~f~ 977 (987)
..|.
T Consensus 238 ~~~~ 241 (375)
T PRK09452 238 NLFV 241 (375)
T ss_pred cHHH
Confidence 6553
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=371.08 Aligned_cols=213 Identities=28% Similarity=0.448 Sum_probs=179.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH-hccc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-RLKI 823 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l-R~~i 823 (987)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999963 359999999999999999999999999999999999999999999999999988877654 6789
Q ss_pred EEEccccccccc-cHHHHhccCCCCCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHH
Q 001980 824 GLVQQEPALFAA-SIFDNIAYGKEGATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 898 (987)
Q Consensus 824 ~~VpQdp~lF~g-TIreNL~~~~~~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAl 898 (987)
+|+||++.+|.+ |+++|+.++....... ++.++++.. ..+++.++ .....||||||||++|||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~l~~~~~----~~~~~LS~G~~qrv~laral 147 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------PRLKERRK----QLAGTLSGGEQQMLAIARAL 147 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------Hhhhhhhh----CchhhCCHHHHHHHHHHHHH
Confidence 999999999986 9999998754322111 222222222 11222333 34457999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001980 899 LKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 899 lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
+++|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 99999999999999999999999999999875 57899999999998765 89999999999999999988754
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=392.14 Aligned_cols=217 Identities=31% Similarity=0.493 Sum_probs=187.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...++. ++.|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999974 3489999999999999999999999999999999999999999999999999877654 5689
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+||+|++.+|+. ||+||+.|+.... +..+.. ..+.+.++.+ |++....+.+.+||||||||++|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~-----~~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA-----ERVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999975 9999999874321 111111 1223445555 67667778889999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
+|+++|||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++.++.
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999999998753 8999999999998755 8999999999999999999998653
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=376.63 Aligned_cols=224 Identities=34% Similarity=0.569 Sum_probs=190.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCCC--CH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRRL--NL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~l 816 (987)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 3599999999999999999999999999999999999985 799999999998653 34
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
..+|+.++|+||++.+|..|+++|+.++.. ..+. +++.++++.+++.+.+. +.++++ ...|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~----~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLKSP----ALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhcCC----hhhCCHHHHH
Confidence 567889999999999999999999986421 1222 34566777777654321 223433 4579999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
|++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988778999999999999865 8999999999999999999998
Q ss_pred cCCCchHH
Q 001980 970 SRPDGAYS 977 (987)
Q Consensus 970 ~~~~g~f~ 977 (987)
+++...|.
T Consensus 242 ~~~~~~~~ 249 (258)
T PRK14268 242 HNPREKST 249 (258)
T ss_pred cCCCCHHH
Confidence 76555443
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-43 Score=380.16 Aligned_cols=221 Identities=31% Similarity=0.500 Sum_probs=186.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743224589999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEcCCCC--CchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 179 GLVNQEPA--LFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 179 ~~v~Q~~~--l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+|++|+|. ++..||+|||.++... .+.++..+. +.+.++.+ |+.........+||||||||++|||||+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LSgGq~qrv~lAral~ 156 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER-----VNEALELV--GMQDFKEREPARLSGGQKQRVAIAGAVA 156 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHH-----HHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999984 4566999999987431 122221111 11223333 5555556667899999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|++|||||||++||+.+++.+.+.|.++.+ |+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 157 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 157 MRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999999998853 8999999999999877999999999999999999887654
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-43 Score=373.88 Aligned_cols=221 Identities=34% Similarity=0.543 Sum_probs=187.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
++++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999641 35999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||+|.+|. .|++||+.++.. ..+ ++++.++++..++.+- ......+.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---------~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA---------EFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH---------HHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999985 699999976421 111 2345566666665420 01223446799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCCc
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDG 974 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~g 974 (987)
|+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+++..
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 229 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPAN 229 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCCC
Confidence 9999999999999999999999999999998753 7999999999998754 899999999999999999999765433
Q ss_pred hH
Q 001980 975 AY 976 (987)
Q Consensus 975 ~f 976 (987)
.|
T Consensus 230 ~~ 231 (242)
T cd03295 230 DF 231 (242)
T ss_pred hH
Confidence 33
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=391.92 Aligned_cols=205 Identities=33% Similarity=0.506 Sum_probs=177.2
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH----hcceEEEcCCCCCchh
Q 001980 115 VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL----RDQIGLVNQEPALFAT 190 (987)
Q Consensus 115 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~v~Q~~~l~~~ 190 (987)
..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++ +++|+||+|++++|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 348999999999999999999999999999999999999999999999999999888776 7789999999999975
Q ss_pred -cHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 001980 191 -TILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 267 (987)
Q Consensus 191 -tv~eni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts 267 (987)
||+|||.++.+.. ..++..+ .+.+.++.+ |++...++.+.+|||||||||+|||||+.+|+|+|||||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~v--gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~s 158 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKE-----KALELLKLV--GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFS 158 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999999864321 1111111 112233333 66666778888999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 268 ALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 268 ~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+||+.+++.+++.+.++. .++|+|+|||+++++.. ||+|++|++|++++.|++++++++
T Consensus 159 aLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 159 ALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999999999875 38999999999998755 899999999999999999998765
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-43 Score=374.85 Aligned_cols=212 Identities=32% Similarity=0.559 Sum_probs=182.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH---HHHhc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL---KSLRL 821 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l---~~lR~ 821 (987)
|+++||+++|+. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2359999999999999999999999999999999999999999999999999987654 44788
Q ss_pred ccEEEcccccccc-ccHHHHhccCCCC--------------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 001980 822 KIGLVQQEPALFA-ASIFDNIAYGKEG--------------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 886 (987)
Q Consensus 822 ~i~~VpQdp~lF~-gTIreNL~~~~~~--------------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 886 (987)
+++|+||++.+|. .|+++|+.++... ..++++.++++..++.++.. ....+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCH
Confidence 9999999998886 6999999764311 11234566666666654432 33457999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~G 963 (987)
|||||++|||||+++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999875 37899999999999854 8999999999999999
Q ss_pred ChhHHh
Q 001980 964 SHSELV 969 (987)
Q Consensus 964 t~~eLl 969 (987)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999873
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=372.72 Aligned_cols=220 Identities=30% Similarity=0.457 Sum_probs=195.9
Q ss_pred ccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHh
Q 001980 741 IRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLR 820 (987)
Q Consensus 741 ~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR 820 (987)
..+.|+++|+++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||
T Consensus 36 ~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------ 98 (282)
T cd03291 36 DDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------ 98 (282)
T ss_pred CCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------
Confidence 34579999999952 2599999999999999999999999999999999999999999999998
Q ss_pred cccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 001980 821 LKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900 (987)
Q Consensus 821 ~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr 900 (987)
+++|+||++.+|.+|+++|+.++.. ..+.++.++++.+++.+.+..+|.++++.+++.+..||||||||++|||||++
T Consensus 99 -~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~ 176 (282)
T cd03291 99 -RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK 176 (282)
T ss_pred -EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 3999999999999999999986532 34456677788889999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH-HHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHH
Q 001980 901 NPAILLLDEATSALDAESECVLQEAL-ERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l-~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l 979 (987)
+|++|||||||++||+++...+.+.+ ++..+++|||+|||+++.+..||+|++|++|++++.|+++++.+. ...|.+.
T Consensus 177 ~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~~ 255 (282)
T cd03291 177 DADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFSSK 255 (282)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHHHH
Confidence 99999999999999999999888754 555568999999999999988999999999999999999999865 3456544
Q ss_pred H
Q 001980 980 L 980 (987)
Q Consensus 980 ~ 980 (987)
+
T Consensus 256 ~ 256 (282)
T cd03291 256 L 256 (282)
T ss_pred H
Confidence 4
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=375.25 Aligned_cols=218 Identities=32% Similarity=0.522 Sum_probs=186.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC---------
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN--------- 815 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~--------- 815 (987)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999963 35999999999999999999999999999999999999999999999999987653
Q ss_pred ----HHHHhcccEEEcccccccc-ccHHHHhccCCC---CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCC
Q 001980 816 ----LKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE---GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ 883 (987)
Q Consensus 816 ----l~~lR~~i~~VpQdp~lF~-gTIreNL~~~~~---~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~ 883 (987)
...+|++++|+||++.+|. .|+++|+.++.. .. .++++.++++..++.++... ....
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADH-----------MPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhc-----------Chhh
Confidence 2467899999999999885 799999986411 11 23445667777776655443 3357
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEE
Q 001980 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIV 960 (987)
Q Consensus 884 LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~iv 960 (987)
||||||||++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 7899999999999854 8999999999999
Q ss_pred EecChhHHhcCCCchH
Q 001980 961 EQGSHSELVSRPDGAY 976 (987)
Q Consensus 961 e~Gt~~eLl~~~~g~f 976 (987)
+.|+++++.+.+.-.|
T Consensus 227 ~~g~~~~~~~~~~~~~ 242 (252)
T TIGR03005 227 EQGKPDEIFRQPKEER 242 (252)
T ss_pred EeCCHHHHhcCCCcHH
Confidence 9999999987654334
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=369.19 Aligned_cols=203 Identities=38% Similarity=0.611 Sum_probs=175.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 478999999963 359999999999999999999999999999999999999999999999999986543 577899
Q ss_pred EEcccccccc-ccHHHHhccCCCC--CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFA-ASIFDNIAYGKEG--AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~-gTIreNL~~~~~~--~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||++.+|. .|+++|+.++... .+ ++++.++++..++.++.... ..+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRY-----------PHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHHHHHH
Confidence 9999998885 6999999764221 11 23456677777776554433 24799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~G 963 (987)
|+++|++|||||||++||+.+...+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999875 37899999999998765 8999999999998865
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-43 Score=377.09 Aligned_cols=223 Identities=32% Similarity=0.551 Sum_probs=189.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCCCC--HH
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRRLN--LK 817 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~i~--l~ 817 (987)
-+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999953 369999999999999999999999999999999999986 47999999999987653 34
Q ss_pred HHhcccEEEccccccccccHHHHhccCC--CC------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 818 SLRLKIGLVQQEPALFAASIFDNIAYGK--EG------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 818 ~lR~~i~~VpQdp~lF~gTIreNL~~~~--~~------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
.+|++++|+||++.+|.+|+++|+.++. .+ ..++++.++++..++.+.+. +.+...+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 6789999999999999999999997641 11 12345667778777755322 123344567999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 899999999999999999999
Q ss_pred hcCCCchHH
Q 001980 969 VSRPDGAYS 977 (987)
Q Consensus 969 l~~~~g~f~ 977 (987)
++.+...|.
T Consensus 236 ~~~~~~~~~ 244 (251)
T PRK14244 236 FKNPQSSKT 244 (251)
T ss_pred hcCCCChHH
Confidence 877655553
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=370.61 Aligned_cols=210 Identities=29% Similarity=0.464 Sum_probs=179.9
Q ss_pred cEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH---H
Q 001980 744 EIELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---L 819 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~---l 819 (987)
.++++||+++|+++. ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||.++..++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999996432 146999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cccEEEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 001980 820 R-LKIGLVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 820 R-~~i~~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 891 (987)
| +.++|+||++.+|.. |+++|+.++.. ... ++++.++++..++.++.. ....+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRAN-----------HRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHH
Confidence 3 679999999998875 99999976311 111 234566777776654433 2345799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCCEEEEecC
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGS 964 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt 964 (987)
++||||++++|+||||||||++||+.+...+.+.|++.. +++|+|+|||+++.+..+|++++|++|+|++.++
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999874 4799999999999999999999999999998775
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=392.29 Aligned_cols=218 Identities=34% Similarity=0.545 Sum_probs=189.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.. +++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999876653 5789
Q ss_pred EEEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+||||++.+|. .|++||+.++.. ..+ ++++.++++..++.++..+.| ..||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 599999987532 122 235677778887766544433 469999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
||+++|++||||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++..++.
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~ 226 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998753 7899999999998765 89999999999999999999988766
Q ss_pred chHH
Q 001980 974 GAYS 977 (987)
Q Consensus 974 g~f~ 977 (987)
..|-
T Consensus 227 ~~~~ 230 (369)
T PRK11000 227 NRFV 230 (369)
T ss_pred cHHH
Confidence 5553
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=379.99 Aligned_cols=215 Identities=28% Similarity=0.550 Sum_probs=186.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC--CCCHHHHhc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--RLNLKSLRL 821 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~l~~lR~ 821 (987)
-|+++||+++|++ +.++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999952 235999999999999999999999999999999999999999999999999984 345667899
Q ss_pred ccEEEcccc--ccccccHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 822 KIGLVQQEP--ALFAASIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 822 ~i~~VpQdp--~lF~gTIreNL~~~~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
+++|+||+| .+|+.|+++|+.++.. ..+. +.+.++++..++.++.. ....+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHHHHHHHH
Confidence 999999998 5789999999976421 1232 34566677777755432 334579999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
|||||+.+|+||||||||++||+.+...+.+.|++..+ ++|||++||+++.+. .||+|++|++|++++.|+++++++
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998764 799999999999986 599999999999999999999876
Q ss_pred C
Q 001980 971 R 971 (987)
Q Consensus 971 ~ 971 (987)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=372.36 Aligned_cols=213 Identities=35% Similarity=0.580 Sum_probs=177.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-----CCCccEEEECCEeCCCCC--HH
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY-----DPNAGHVLLDNVDIKTLQ--LR 172 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-----~~~~G~i~~~g~~~~~~~--~~ 172 (987)
|+++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+ ..
T Consensus 1 i~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 4789999999743 4899999999999999999999999999999999999 999999999999987766 45
Q ss_pred HHhcceEEEcCCCCCchhcHHHHHhcCCCCC---CHHHHHHHHHHHhHHHHHHhCCCCCcccccCC--CCCCChHHHHHH
Q 001980 173 WLRDQIGLVNQEPALFATTILENILYGKPEA---TMAEVEAAASAANAHSFITLLPNGYSTQVGER--GVQLSGGQKQRI 247 (987)
Q Consensus 173 ~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~--g~~LSgGqkqRi 247 (987)
.++++++|++|++.+|+.|++||+.++.... ..++..+ .+.+.++.+ |+....... +.+||||||||+
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~LSgG~~qrv 150 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE-----RVEEALRKA--ALWDEVKDRLHALGLSGGQQQRL 150 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHH-----HHHHHHHHc--CCChHHhccCCcccCCHHHHHHH
Confidence 6678899999999988779999998753211 1111111 112223333 444333444 579999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHH
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEE 322 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 322 (987)
+|||||+.+|+++||||||++||+.+++.+.+.|+++.+.+|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999999999999999999999999999999999988645899999999998765 89999999999999988765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-43 Score=373.74 Aligned_cols=221 Identities=31% Similarity=0.506 Sum_probs=185.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcce
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL-RDQI 178 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~i 178 (987)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999973 358999999999999999999999999999999999999999999999999987776543 5679
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCCCHHHH-------HHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHH
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEATMAEV-------EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialA 250 (987)
+|++|++.+++. |++||+.++........+ ........+.+.++.+ |++...+....+||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 999999999886 999999876421110000 0001111233455555 677777888899999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 251 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 99999999999999999999999999999999876 58999999999999866 89999999999999999888754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=377.41 Aligned_cols=224 Identities=29% Similarity=0.497 Sum_probs=188.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH---HHh
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLR 820 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~---~lR 820 (987)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999953 3599999999999999999999999999999999999999999999999999876643 457
Q ss_pred cccEEEccccccccc-cHHHHhccCCC---CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 821 LKIGLVQQEPALFAA-SIFDNIAYGKE---GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 821 ~~i~~VpQdp~lF~g-TIreNL~~~~~---~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
++++|+||++.+|.+ |+++|+.++.. ..+. +.+.++++..++.+... . ....||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~----~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-------L----MPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-------C----ChhhCCHHHHHHH
Confidence 889999999999986 99999975421 1222 23445666666544322 2 2347999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
+|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999998866 8999999999999999999998
Q ss_pred cCCCchHHHHHH
Q 001980 970 SRPDGAYSRLLQ 981 (987)
Q Consensus 970 ~~~~g~f~~l~~ 981 (987)
+++...+..++.
T Consensus 233 ~~~~~~~~~~~~ 244 (269)
T PRK11831 233 ANPDPRVRQFLD 244 (269)
T ss_pred cCCcHHHHHHHH
Confidence 765445555554
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=375.62 Aligned_cols=225 Identities=31% Similarity=0.527 Sum_probs=189.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~l 816 (987)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 359999999999999999999999999999999999997 479999999999864 345
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC--CC-----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~-----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|+.++|++|++.+|+.|+++|+.++.. .. .++++.++++..+++... ...++ ....+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~----~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---KDNLD----RNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---HHHhc----cChhhCCHHHH
Confidence 667889999999999999999999986431 11 123456667777764321 11223 34467999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|++|||||||++||+++...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777999999999999866 899999999999999999999
Q ss_pred hcCCCchHHH
Q 001980 969 VSRPDGAYSR 978 (987)
Q Consensus 969 l~~~~g~f~~ 978 (987)
...+.-.|.+
T Consensus 234 ~~~~~~~~~~ 243 (251)
T PRK14251 234 FIAPKKQITS 243 (251)
T ss_pred HhCCCCHHHH
Confidence 8765444443
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=381.98 Aligned_cols=217 Identities=32% Similarity=0.512 Sum_probs=184.3
Q ss_pred EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC----CCHHH
Q 001980 745 IELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR----LNLKS 818 (987)
Q Consensus 745 I~f~~vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~----i~l~~ 818 (987)
|+++|++++|++.. ..++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 89999999996421 1359999999999999999999999999999999999999999999999999863 34667
Q ss_pred HhcccEEEcccc--ccccccHHHHhccCCC--CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 819 LRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 819 lR~~i~~VpQdp--~lF~gTIreNL~~~~~--~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
.|++++||||+| .+|+.|+++|+.++.. ..+.+ .+.++++.+++.+.+ .+ .....|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~------~~----~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL------LA----RSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh------hh----CCcccCCHHHHH
Confidence 888999999998 6888999999986532 12333 345566666664211 12 234579999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhH
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~e 967 (987)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+ +.|||+|||+++.+. .||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998753 789999999999885 489999999999999999999
Q ss_pred HhcC
Q 001980 968 LVSR 971 (987)
Q Consensus 968 Ll~~ 971 (987)
+.++
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8754
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=380.08 Aligned_cols=220 Identities=30% Similarity=0.517 Sum_probs=184.7
Q ss_pred EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC--HHHHh
Q 001980 100 IEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ--LRWLR 175 (987)
Q Consensus 100 i~~~~~~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~--~~~~~ 175 (987)
|+++|++|+|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997422 135999999999999999999999999999999999999999999999999997653 34677
Q ss_pred cceEEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCc--ccccCCCCCCChHHHHHHHH
Q 001980 176 DQIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYS--TQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 176 ~~i~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~--t~~~~~g~~LSgGqkqRial 249 (987)
++|+||||+| .+|+.|++||+.++... .+.++..+. +.+.++.+ |+. +.....+.+||||||||++|
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR-----VKRAMNIV--GLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHH-----HHHHHHHc--CCCchhhccCCcccCCHHHHHHHHH
Confidence 8999999998 56788999999986321 122222211 12233333 554 45677788999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHHHh
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
||||+.+|++|||||||++||+.+++.+.+.|.++.+ |+|||++||+++.+. .||||++|++|++++.|+.+++.+.
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999998853 899999999999885 5999999999999999999988653
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=381.18 Aligned_cols=217 Identities=25% Similarity=0.468 Sum_probs=184.1
Q ss_pred cEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC--------
Q 001980 744 EIELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR-------- 813 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~-------- 813 (987)
.|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 389999999996432 1259999999999999999999999999999999999999999999999887632
Q ss_pred ----------------CCHHHHhcccEEEcccc--ccccccHHHHhccCCC--CCCH----HHHHHHHHHcCch-hhHhh
Q 001980 814 ----------------LNLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATE----AEVVEAARAANVH-GFVSA 868 (987)
Q Consensus 814 ----------------i~l~~lR~~i~~VpQdp--~lF~gTIreNL~~~~~--~~sd----~ei~~al~~a~l~-~~i~~ 868 (987)
.+...+|++|+||||+| .+|..|++|||.++.. ..+. +++.++++.+++. ++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~- 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ- 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-
Confidence 13467889999999986 6888999999987532 2233 3456667777664 3322
Q ss_pred CCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-
Q 001980 869 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR- 946 (987)
Q Consensus 869 lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~- 946 (987)
.....||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.
T Consensus 161 ----------~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 161 ----------RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred ----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 3345799999999999999999999999999999999999999999999875 4899999999999874
Q ss_pred ccCEEEEEeCCEEEEecChhHHhcC
Q 001980 947 GVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 947 ~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
.||||++|++|++++.|+++++.++
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHhcC
Confidence 5899999999999999999998765
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=369.60 Aligned_cols=212 Identities=29% Similarity=0.547 Sum_probs=181.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 789999999963 36999999999999999999999999999999999999999999999999998776544 45899
Q ss_pred EEcccccc-ccccHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPAL-FAASIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~l-F~gTIreNL~~~~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||++.+ +..|+++|+.++.. ..+. +++.+.++..++.+ ........||||||||++||||
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrl~lara 146 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAE-----------RADDKVRELNGGHRRRVEIARA 146 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHH
Confidence 99999987 56899999976421 1222 23344455444432 2334445799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcC
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|+++|+||||||||++||+.+...+.+.|++.. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999999999999875 47899999999999988999999999999999999999865
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=375.07 Aligned_cols=224 Identities=32% Similarity=0.506 Sum_probs=190.1
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCC--CC
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LN 815 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~ 815 (987)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 36999999999963 359999999999999999999999999999999999987 589999999999863 56
Q ss_pred HHHHhcccEEEccccccccccHHHHhccCCCC--C---CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 816 LKSLRLKIGLVQQEPALFAASIFDNIAYGKEG--A---TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 816 l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~--~---sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
...+|++++|+||++.+|..|++||+.++... . .++++.++++.+++.+.+. .........|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHHHH
Confidence 67789999999999999999999999865321 1 1345666777777654332 1223344579999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeC-----------CE
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQD-----------GR 958 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~-----------G~ 958 (987)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999998778899999999998854 899999996 67
Q ss_pred EEEecChhHHhcCCCchH
Q 001980 959 IVEQGSHSELVSRPDGAY 976 (987)
Q Consensus 959 ive~Gt~~eLl~~~~g~f 976 (987)
++|.|++++++..+...|
T Consensus 242 ~~~~~~~~~~~~~~~~~~ 259 (269)
T PRK14259 242 LVEFNETKKIFNSPKQKA 259 (269)
T ss_pred EEEeCCHHHHHhCcCChH
Confidence 999999999987644333
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=380.25 Aligned_cols=220 Identities=26% Similarity=0.501 Sum_probs=184.3
Q ss_pred EEEEeEEEECCCCCC--ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC----CCHHH
Q 001980 100 IEFKNVTFSYPSRPD--VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT----LQLRW 173 (987)
Q Consensus 100 i~~~~~~~~y~~~~~--~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~----~~~~~ 173 (987)
|+++|++|+|+.... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999974321 258999999999999999999999999999999999999999999999999853 23456
Q ss_pred HhcceEEEcCCC--CCchhcHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHHHHH
Q 001980 174 LRDQIGLVNQEP--ALFATTILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIA 248 (987)
Q Consensus 174 ~~~~i~~v~Q~~--~l~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkqRia 248 (987)
+++.|+||+|+| .+|+.|+.||+.|+.... ..++... .+.+.++.+ |+. ....+.+.+||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK-----IAAEKLEMV--GLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhccCCcccCCHHHHHHHH
Confidence 788999999998 788889999999874321 2222211 112333333 543 3456778899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHHHh
Q 001980 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 249 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|||||+.+|+++||||||++||+.++..+.+.|.++. .|+|||++||+++.+. .||+|++|++|+++++|+++++...
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999999999998875 4899999999999885 5999999999999999999998654
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=375.39 Aligned_cols=221 Identities=31% Similarity=0.509 Sum_probs=190.9
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCC--CC
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LN 815 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~ 815 (987)
..|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 36999999999953 469999999999999999999999999999999999997 579999999999864 34
Q ss_pred HHHHhcccEEEccccccccccHHHHhccCCC--CC-----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 816 LKSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 816 l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~-----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
...+|+.++|+||++.+|.+|+++|+.++.. .. .++++.++++..++.+.+.. ........|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-------DLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhh-------hhcCCcccCCHHH
Confidence 6678999999999999999999999986422 11 13446677778877655432 2345566899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhH
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~e 967 (987)
|||++|||||+++|++|||||||++||+.+...+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999998855 89999999999999999999
Q ss_pred HhcCCC
Q 001980 968 LVSRPD 973 (987)
Q Consensus 968 Ll~~~~ 973 (987)
+.+.+.
T Consensus 249 ~~~~~~ 254 (267)
T PRK14237 249 IFTNPK 254 (267)
T ss_pred HhcCCC
Confidence 986543
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=377.20 Aligned_cols=216 Identities=31% Similarity=0.560 Sum_probs=188.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|+++ +.++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999632 34699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcccc--ccccccHHHHhccCCC--CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 824 GLVQQEP--ALFAASIFDNIAYGKE--GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 824 ~~VpQdp--~lF~gTIreNL~~~~~--~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
+|+||+| .++..|+++|+.++.. ..+.+ .+.++++..++.++.... ..+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-----------PQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 4567899999986421 12333 345666777776654433 357999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcC
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998753 4899999999999888999999999999999999998764
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=374.06 Aligned_cols=223 Identities=33% Similarity=0.536 Sum_probs=189.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcc---CCC--CCceEEECCccCCCC--CH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERF---YDP--TAGKVMIDGKDIRRL--NL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl---~~p--~~G~I~idG~di~~i--~l 816 (987)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999963 3599999999999999999999999999999999997 444 589999999998764 35
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC--C-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--G-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|++++|+||++.+|..|+++|+.++.. . ..+++++++++..++.+.+.. .....+..||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD-------KLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhh-------hhhCCcccCCHHHH
Confidence 677899999999999999999999975421 1 123456677777777554432 22344568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999855 899999999999999999999
Q ss_pred hcCCCchH
Q 001980 969 VSRPDGAY 976 (987)
Q Consensus 969 l~~~~g~f 976 (987)
.+++...|
T Consensus 233 ~~~~~~~~ 240 (250)
T PRK14245 233 FTNPEKEA 240 (250)
T ss_pred hcCCCChH
Confidence 87654443
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=376.15 Aligned_cols=223 Identities=33% Similarity=0.553 Sum_probs=191.6
Q ss_pred cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCC--C
Q 001980 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRR--L 814 (987)
Q Consensus 742 ~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i 814 (987)
.+.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 446999999999953 3599999999999999999999999999999999999984 89999999999875 4
Q ss_pred CHHHHhcccEEEccccccccccHHHHhccCCC--CC-C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 001980 815 NLKSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 887 (987)
Q Consensus 815 ~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~-s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 887 (987)
+...+|++++|+||++.+|.+|+++|+.++.. .. . ++.+.++++.+++.+.+.. .....+..||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHH
Confidence 45678999999999999999999999976421 11 1 2346777777777654432 234456689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChh
Q 001980 888 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHS 966 (987)
Q Consensus 888 QrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~ 966 (987)
||||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999998778999999999999865 8999999999999999999
Q ss_pred HHhcCCCc
Q 001980 967 ELVSRPDG 974 (987)
Q Consensus 967 eLl~~~~g 974 (987)
++.+++..
T Consensus 253 ~~~~~~~~ 260 (272)
T PRK14236 253 TLFTSPAK 260 (272)
T ss_pred HHhcCCCc
Confidence 99866443
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=378.85 Aligned_cols=217 Identities=30% Similarity=0.516 Sum_probs=190.0
Q ss_pred cEEEEeEEEECCCCC---CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC-HHHH
Q 001980 744 EIELRHVDFAYPSRP---DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN-LKSL 819 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~---~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~-l~~l 819 (987)
-|+++|++++|++.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999996421 236999999999999999999999999999999999999999999999999997654 4567
Q ss_pred hcccEEEccccc--cccccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 001980 820 RLKIGLVQQEPA--LFAASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 820 R~~i~~VpQdp~--lF~gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 891 (987)
|++++|+||+|. +|..|+.+|+.++.. ..+ ++++.++++.+++.++..+.| ..||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 899999999984 677789999986521 112 345777888888877665543 4799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHh
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl 969 (987)
++|||||+++|++|||||||++||+.+...+.+.|++.. .++|||+|||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999874 378999999999999889999999999999999999997
Q ss_pred cC
Q 001980 970 SR 971 (987)
Q Consensus 970 ~~ 971 (987)
.+
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 64
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=377.66 Aligned_cols=217 Identities=31% Similarity=0.549 Sum_probs=191.2
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC---ceEEECCccCCCCCHHHH
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA---GKVMIDGKDIRRLNLKSL 819 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~---G~I~idG~di~~i~l~~l 819 (987)
+.|+++|++++|++. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++ |+|.+||.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 369999999999643 2359999999999999999999999999999999999999987 899999999988887788
Q ss_pred hcccEEEcccc--ccccccHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 001980 820 RLKIGLVQQEP--ALFAASIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 820 R~~i~~VpQdp--~lF~gTIreNL~~~~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 891 (987)
|++++|+||+| .++..|++|||.++.. ..+. +++.++++.+++.++....| .+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHH
Confidence 99999999998 4678999999986522 2333 34667788888876655443 5799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHh
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl 969 (987)
++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|||++||+++.+..||+|++|++|++++.|++++++
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999998753 78999999999999889999999999999999999987
Q ss_pred cC
Q 001980 970 SR 971 (987)
Q Consensus 970 ~~ 971 (987)
..
T Consensus 232 ~~ 233 (282)
T PRK13640 232 SK 233 (282)
T ss_pred cC
Confidence 54
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=373.49 Aligned_cols=227 Identities=33% Similarity=0.535 Sum_probs=192.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCCC--CH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRRL--NL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~l 816 (987)
.|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999963 3589999999999999999999999999999999999984 899999999998753 34
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC---CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE---GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~---~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|++++|+||+|.+|..|+++|+.++.. .. .++++.++++..++.+.+.. .......+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHH
Confidence 567889999999999999999999986421 11 23345667777777654322 13345568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999998778999999999998754 899999999999999999999
Q ss_pred hcCCCchHHHHH
Q 001980 969 VSRPDGAYSRLL 980 (987)
Q Consensus 969 l~~~~g~f~~l~ 980 (987)
.+++...|.+.+
T Consensus 233 ~~~~~~~~~~~~ 244 (250)
T PRK14262 233 VERPKNKLTEEY 244 (250)
T ss_pred HhCCCChHHHHH
Confidence 876544455543
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=360.68 Aligned_cols=200 Identities=36% Similarity=0.548 Sum_probs=181.7
Q ss_pred EEEEeEEEECCCCCC--ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 745 IELRHVDFAYPSRPD--VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~--~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
|+++||+++|++..+ .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999964311 3599999999999999999999999999999999999999999999999 6
Q ss_pred cEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 001980 823 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 902 (987)
Q Consensus 823 i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p 902 (987)
|+|+||+|.+|++|++||+.++.. .++++.+++++.+++.+++..+|.|+++.+.+.+..||+|||||++|||||+++|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999987633 4566788888999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHHHHc-CCCeEEEEecCchhhhccCEEEEEeCCE
Q 001980 903 AILLLDEATSALDAESECVLQE-ALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGR 958 (987)
Q Consensus 903 ~ILlLDEaTS~LD~~te~~I~~-~l~~~~-~~~TvI~IaHRl~ti~~~D~Iivl~~G~ 958 (987)
+++||||||++||+++.+.+.+ .+++.. +++|||++||+++.+..||+|++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999888877 456554 4689999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=376.07 Aligned_cols=222 Identities=30% Similarity=0.482 Sum_probs=187.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~l 816 (987)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.++|.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5999999999963 359999999999999999999999999999999999865 789999999999865 345
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC---C----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE---G----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~---~----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|++++|+||++.+|.+|+++|+.++.. . ..++.+.++++..++.+.+.. .......+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKD-------RLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHH-------HHhcCcccCCHHHH
Confidence 567899999999999999999999985421 1 112345667777766432221 12334567999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+. .||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999876789999999999876 4899999999999999999999
Q ss_pred hcCCCch
Q 001980 969 VSRPDGA 975 (987)
Q Consensus 969 l~~~~g~ 975 (987)
+.++...
T Consensus 251 ~~~~~~~ 257 (268)
T PRK14248 251 FTSPKQQ 257 (268)
T ss_pred HhCCCCh
Confidence 8764433
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=373.77 Aligned_cols=221 Identities=31% Similarity=0.502 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC--C---CCceEEECCccCCCC--CH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--P---TAGKVMIDGKDIRRL--NL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~--p---~~G~I~idG~di~~i--~l 816 (987)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 359999999999999999999999999999999999954 6 489999999998653 34
Q ss_pred HHHhcccEEEccccccccccHHHHhccCC---CC----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGK---EG----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~---~~----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|+.++|+||++.+|+.|++||+.++. +. ..++++.++++.+++.+.+.. ........||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD-------RLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHH-------HHhcCcccCCHHHH
Confidence 56788999999999999999999997542 11 113445566777776543321 22344567999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998767999999999998765 899999999999999999999
Q ss_pred hcCCCc
Q 001980 969 VSRPDG 974 (987)
Q Consensus 969 l~~~~g 974 (987)
++.+..
T Consensus 235 ~~~~~~ 240 (252)
T PRK14239 235 FMNPKH 240 (252)
T ss_pred HhCCCC
Confidence 876543
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=371.51 Aligned_cols=224 Identities=35% Similarity=0.599 Sum_probs=190.1
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCC--CC
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRR--LN 815 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~ 815 (987)
|.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 56999999999963 3599999999999999999999999999999999999863 68999999999875 45
Q ss_pred HHHHhcccEEEccccccccccHHHHhccCCC--C-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 816 LKSLRLKIGLVQQEPALFAASIFDNIAYGKE--G-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 816 l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
...+|++++|+||++.+|..|+++|+.++.. . ..++++.++++.+++.+.+.. ........|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-------RLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-------HHhcCCCCCCHHH
Confidence 6678999999999999999999999986421 1 123455666777776543321 1233455799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhH
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~e 967 (987)
|||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999998865 89999999999999999999
Q ss_pred HhcCCCchH
Q 001980 968 LVSRPDGAY 976 (987)
Q Consensus 968 Ll~~~~g~f 976 (987)
+..++...+
T Consensus 232 ~~~~~~~~~ 240 (250)
T PRK14240 232 LFTNPKDKR 240 (250)
T ss_pred HHhCCCChH
Confidence 986654444
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=373.39 Aligned_cols=224 Identities=32% Similarity=0.494 Sum_probs=189.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC--C---CCceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--P---TAGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~--p---~~G~I~idG~di~~--i~l 816 (987)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999963 359999999999999999999999999999999999997 3 58999999999864 455
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCCC---CCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKEG---ATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~---~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|++++|+||++.+|.+|+++|+.++... ..+ +++.++++..++.+++.. ........||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD-------RLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHH
Confidence 6788999999999999999999999764211 122 234556667776544321 12334557999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|+||||||||++||+.+...+++.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 899999999999999999999
Q ss_pred hcCCCchHH
Q 001980 969 VSRPDGAYS 977 (987)
Q Consensus 969 l~~~~g~f~ 977 (987)
+.++...|.
T Consensus 242 ~~~~~~~~~ 250 (259)
T PRK14274 242 FSNPDDQRT 250 (259)
T ss_pred hhCCCCHHH
Confidence 876554443
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=388.66 Aligned_cols=220 Identities=38% Similarity=0.600 Sum_probs=186.7
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---Hh
Q 001980 100 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW---LR 175 (987)
Q Consensus 100 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~~ 175 (987)
|+++|++|+|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... ++
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 346999999999999999999999999999999999999999999999999998776543 46
Q ss_pred cceEEEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 176 DQIGLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
++|+|++|++.+|+ .|++||+.++... ....+..+ .+.+.++.+ |+.......+.+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 78999999999986 5999999875321 11222111 122344444 66666677788999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|+.+|+++||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~ 231 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH 231 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999998853 8999999999999876 899999999999999999998764
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-43 Score=364.16 Aligned_cols=199 Identities=28% Similarity=0.516 Sum_probs=174.4
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEE
Q 001980 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 825 (987)
Q Consensus 746 ~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~ 825 (987)
+++|++++|++. .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.. ...|++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 468999999641 359999999999999999999999999999999999999999999999998864 456788999
Q ss_pred Ecccc--ccccccHHHHhccCCCCC--CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 001980 826 VQQEP--ALFAASIFDNIAYGKEGA--TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901 (987)
Q Consensus 826 VpQdp--~lF~gTIreNL~~~~~~~--sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~ 901 (987)
+||+| .+|..|++||+.++.... .++++.++++..++.++....| ..||||||||++|||||+++
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhC
Confidence 99998 467899999998754322 2357788888888877654443 36999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEE
Q 001980 902 PAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIV 960 (987)
Q Consensus 902 p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~iv 960 (987)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999874 57899999999999875 8999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=389.27 Aligned_cols=217 Identities=31% Similarity=0.506 Sum_probs=184.2
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ 87 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRH 87 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCC
Confidence 35999999999974 3489999999999999999999999999999999999999999999999999877654 467
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
|+||+|++.+|+. ||+|||.|+... ....+..+ .+.+.++.+ |+.........+|||||||||+|||||+
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~p~~LSgGq~QRVaLARaL~ 160 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP-----RVMEALRMV--QLEEFAQRKPHQLSGGQQQRVAIARAVV 160 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 9999999999976 999999987431 11111111 111223333 5555566677799999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++++.. +|+|++|++|+|++.|++++++.+
T Consensus 161 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 161 NKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999998853 8999999999998754 899999999999999999998764
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=382.24 Aligned_cols=226 Identities=27% Similarity=0.437 Sum_probs=190.0
Q ss_pred cEEEEeEEEECCCCC-------CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH
Q 001980 744 EIELRHVDFAYPSRP-------DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~-------~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l 816 (987)
-|+++|++++|+.+. ..++|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996321 2369999999999999999999999999999999999999999999999999988875
Q ss_pred H---HHhcccEEEccccc--ccc-ccHHHHhccCC---CCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCC
Q 001980 817 K---SLRLKIGLVQQEPA--LFA-ASIFDNIAYGK---EGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ 883 (987)
Q Consensus 817 ~---~lR~~i~~VpQdp~--lF~-gTIreNL~~~~---~~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~ 883 (987)
. .+|++|+||||+|. |+. -|+.+|+..+. .... .+.+.++++.+++.+ ..++... ..
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~~p----~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDRYP----HM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcCCC----cc
Confidence 3 56889999999994 444 48888885321 1112 245677777777742 1233333 46
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEE
Q 001980 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIV 960 (987)
Q Consensus 884 LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~iv 960 (987)
||||||||++|||||+.+|++||+||||++||..+.+.|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 7899999999999975 8999999999999
Q ss_pred EecChhHHhcCCCchHHHH
Q 001980 961 EQGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 961 e~Gt~~eLl~~~~g~f~~l 979 (987)
|.|+++++++++...|.+.
T Consensus 235 e~g~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQA 253 (327)
T ss_pred EECCHHHHhcCCCCHHHHH
Confidence 9999999998776667654
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=388.84 Aligned_cols=217 Identities=28% Similarity=0.473 Sum_probs=186.1
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc--cEEEECCEeCCCCCHHHHh
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA--GHVLLDNVDIKTLQLRWLR 175 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~--G~i~~~g~~~~~~~~~~~~ 175 (987)
+.++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...++. +
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~--~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH--K 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH--H
Confidence 35899999999974 348999999999999999999999999999999999999999 9999999999776653 4
Q ss_pred cceEEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 176 DQIGLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
+.|+||+|++.+|+. ||+|||.|+... ....+..+ ...+.++.+ |++....+...+|||||||||+||||
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSgGq~QRvaLARA 151 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE-----RVADALKLV--GLGDAAAHLPAQLSGGMQQRIAIARA 151 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCCchhhCChhhCCHHHHHHHHHHHH
Confidence 689999999999976 999999987431 12122211 122334444 66666778888999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC---CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLMV---GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|+.+|++||||||||+||+.+++.+.+.|+++.+ |.|+|+|||+++++.. ||+|++|++|++++.|+++++...
T Consensus 152 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 152 IAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999998753 7899999999998765 899999999999999999999765
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=371.42 Aligned_cols=225 Identities=29% Similarity=0.510 Sum_probs=190.5
Q ss_pred cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC--C---CCceEEECCccCCCC--
Q 001980 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--P---TAGKVMIDGKDIRRL-- 814 (987)
Q Consensus 742 ~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~--p---~~G~I~idG~di~~i-- 814 (987)
+|.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++...
T Consensus 2 ~~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 2 NNKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred CcEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 367999999999963 359999999999999999999999999999999999986 4 689999999998653
Q ss_pred CHHHHhcccEEEcccccccc-ccHHHHhccCCC--C-CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 001980 815 NLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE--G-AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 886 (987)
Q Consensus 815 ~l~~lR~~i~~VpQdp~lF~-gTIreNL~~~~~--~-~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 886 (987)
....+|++++|+||++.+|. .|+++|+.++.. . .+ ++.+.++++..++.+++..+ ....+.+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~ 151 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR-------LKSNAMELSG 151 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH-------hhCCcCcCCH
Confidence 45577899999999999987 699999975421 1 11 23456677777776544321 2234567999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecCh
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSH 965 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~ 965 (987)
|||||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|+|++.|++
T Consensus 152 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14256 152 GQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET 231 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998777899999999999855 899999999999999999
Q ss_pred hHHhcCCCchH
Q 001980 966 SELVSRPDGAY 976 (987)
Q Consensus 966 ~eLl~~~~g~f 976 (987)
+++...+...|
T Consensus 232 ~~~~~~~~~~~ 242 (252)
T PRK14256 232 KKIFTTPEKKQ 242 (252)
T ss_pred HHHHhCCCcHH
Confidence 99987655443
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=376.09 Aligned_cols=222 Identities=32% Similarity=0.561 Sum_probs=189.4
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCC--CC
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LN 815 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~ 815 (987)
..|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++.. .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35999999999963 359999999999999999999999999999999999997 689999999999865 34
Q ss_pred HHHHhcccEEEccccccccccHHHHhccCC-----CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 816 LKSLRLKIGLVQQEPALFAASIFDNIAYGK-----EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 816 l~~lR~~i~~VpQdp~lF~gTIreNL~~~~-----~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
...+|++++|+||++.+|..|+++|+.++. +...+++++++++..++...+... ......+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQ-------LDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHH-------HhCCcccCCHHHHH
Confidence 567889999999999999899999997542 111245677788888775443221 23345679999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEE-EEeCCEEEEecChhHH
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIG-VVQDGRIVEQGSHSEL 968 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Ii-vl~~G~ive~Gt~~eL 968 (987)
|++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. |||++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998777899999999999876 89975 5799999999999999
Q ss_pred hcCCCc
Q 001980 969 VSRPDG 974 (987)
Q Consensus 969 l~~~~g 974 (987)
.+++..
T Consensus 268 ~~~~~~ 273 (285)
T PRK14254 268 FENPES 273 (285)
T ss_pred HhCcCC
Confidence 866443
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=389.69 Aligned_cols=206 Identities=38% Similarity=0.631 Sum_probs=180.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH----hcccEEEcccccccc-c
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL----RLKIGLVQQEPALFA-A 835 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l----R~~i~~VpQdp~lF~-g 835 (987)
++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.|+.+++...+ |++++||||++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999998876654 468999999999986 5
Q ss_pred cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeC
Q 001980 836 SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 909 (987)
Q Consensus 836 TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDE 909 (987)
|++||+.++.. ..+ ++++.++++.+++.++..+.| .+||||||||++|||||+.+|+||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999986521 112 345677888888877655544 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001980 910 ATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAYS 977 (987)
Q Consensus 910 aTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~ 977 (987)
||++||+.+.+.+++.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|++++++.++...|.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v 261 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYV 261 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHH
Confidence 999999999999999999874 47899999999998865 899999999999999999999887655443
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=364.00 Aligned_cols=203 Identities=26% Similarity=0.501 Sum_probs=178.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++||+++|++ .++|+|+||+|++| ++||+|+||||||||+++|.|+++|++|+|.++|.++...+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999953 35999999999999 99999999999999999999999999999999999998777 77899999
Q ss_pred EEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||+|.+|.+ |++||+.+... ..+ ++++.++++..++.++.+ +.+ ..||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-------KKI----GSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-------Cch----hhCCHHHHHHHHHHHH
Confidence 99999999876 99999975311 111 345677788888765533 333 4699999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~G 963 (987)
|+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. +|++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999998777999999999999865 8999999999999865
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=372.93 Aligned_cols=219 Identities=29% Similarity=0.505 Sum_probs=187.2
Q ss_pred cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCC-------
Q 001980 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL------- 814 (987)
Q Consensus 742 ~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i------- 814 (987)
.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..+
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 3 ENKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred CccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 357999999999963 3599999999999999999999999999999999999999999999999988642
Q ss_pred ------CHHHHhcccEEEcccccccc-ccHHHHhccCC---CCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCC
Q 001980 815 ------NLKSLRLKIGLVQQEPALFA-ASIFDNIAYGK---EGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGER 880 (987)
Q Consensus 815 ------~l~~lR~~i~~VpQdp~lF~-gTIreNL~~~~---~~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~ 880 (987)
....+|++++|+||++.+|. .|++||+.++. .... ++++.++++..++.+... ...
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~ 149 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKY 149 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCC
Confidence 13467889999999999997 59999997531 1111 234566677776655431 233
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCE
Q 001980 881 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGR 958 (987)
Q Consensus 881 G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ 958 (987)
...||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||||++|++|+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 45799999999999999999999999999999999999999999999875 48999999999999986 89999999999
Q ss_pred EEEecChhHHhcCCC
Q 001980 959 IVEQGSHSELVSRPD 973 (987)
Q Consensus 959 ive~Gt~~eLl~~~~ 973 (987)
+++.|+++++++.+.
T Consensus 230 i~~~~~~~~~~~~~~ 244 (257)
T PRK10619 230 IEEEGAPEQLFGNPQ 244 (257)
T ss_pred EEEeCCHHHhhhCcc
Confidence 999999999986543
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=387.26 Aligned_cols=215 Identities=33% Similarity=0.522 Sum_probs=183.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++ .+++|+
T Consensus 3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 789999999974 348999999999999999999999999999999999999999999999999977654 346899
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 180 LVNQEPALFAT-TILENILYGKPE------ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
||+|++.+|+. |++||+.|+... .+.++..+ .+.+.++.+ |+.......+.+||||||||++||||
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalArA 150 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA-----KVTQLLEMV--QLAHLADRYPAQLSGGQKQRVALARA 150 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 99999999975 999999987431 11111111 122334444 55555677788999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|+.+|+++||||||++||+.+++.+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++..+
T Consensus 151 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 151 LAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999998853 7899999999998765 899999999999999999998764
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=365.70 Aligned_cols=207 Identities=26% Similarity=0.478 Sum_probs=177.9
Q ss_pred EEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 745 IELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
|+++||+++|++... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 789999999964311 159999999999999999999999999999999999999999999999999976 456778999
Q ss_pred EEEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+|+||+|.+|.+ |++||+.++.. ..+ ++++.++++..++.+.... ...+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-----------RVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhh-----------hhhhcCHHHHHHHHHHH
Confidence 999999999985 99999975321 111 3455667777777655432 34579999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~G 963 (987)
|++++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. +|+|++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999875 47899999999998865 7999999999998865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=376.28 Aligned_cols=214 Identities=31% Similarity=0.534 Sum_probs=188.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
++++||+++|+++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999632 25999999999999999999999999999999999999999999999999998878888899999
Q ss_pred EEcccc--ccccccHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 825 LVQQEP--ALFAASIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 825 ~VpQdp--~lF~gTIreNL~~~~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
|+||+| .+|..|+++|+.++.. ..+. +.+.++++..++.++....| ..||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 4788999999975421 1222 34677788888776654433 479999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999998753 789999999999985 5899999999999999999999764
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=378.97 Aligned_cols=220 Identities=31% Similarity=0.537 Sum_probs=183.8
Q ss_pred EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC----CCHHH
Q 001980 100 IEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT----LQLRW 173 (987)
Q Consensus 100 i~~~~~~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~----~~~~~ 173 (987)
++++|++|+|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997422 1359999999999999999999999999999999999999999999999999863 23456
Q ss_pred HhcceEEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHHHHH
Q 001980 174 LRDQIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIA 248 (987)
Q Consensus 174 ~~~~i~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkqRia 248 (987)
++++|+||+|+| .+|+.||+|||.|+... .+.++..+. +.+.++.+ |+. ......+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK-----AREMIELV--GLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCChhhhhCCcccCCHHHHHHHH
Confidence 777899999998 57888999999986321 122222111 12334443 554 3346677899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 249 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|||||+.+|+++||||||++||+.++..+.+.|+++. .|.|||++||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999999885 38999999999999865 89999999999999999998865
Q ss_pred h
Q 001980 326 K 326 (987)
Q Consensus 326 ~ 326 (987)
.
T Consensus 236 ~ 236 (290)
T PRK13634 236 D 236 (290)
T ss_pred C
Confidence 4
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=377.87 Aligned_cols=220 Identities=34% Similarity=0.572 Sum_probs=186.0
Q ss_pred EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----CHHH
Q 001980 100 IEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL----QLRW 173 (987)
Q Consensus 100 i~~~~~~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~----~~~~ 173 (987)
++++|++|+|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997422 13599999999999999999999999999999999999999999999999998653 3456
Q ss_pred HhcceEEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcc-cccCCCCCCChHHHHHHH
Q 001980 174 LRDQIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYST-QVGERGVQLSGGQKQRIA 248 (987)
Q Consensus 174 ~~~~i~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~~~~g~~LSgGqkqRia 248 (987)
++++||||||+| .+|+.|+.|||.++... .+.++..+. +.+.+..+ |+.+ .....+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 67888999999986321 122222221 22344444 7763 456788999999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHHH
Q 001980 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 249 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|||||+.+|+++||||||++||+.++..+.+.|+++. .|+|+|++||+++.+. .||||++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999885 3899999999999875 589999999999999999998865
Q ss_pred h
Q 001980 326 K 326 (987)
Q Consensus 326 ~ 326 (987)
.
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 4
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=372.13 Aligned_cols=217 Identities=31% Similarity=0.466 Sum_probs=182.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCEeCCCCCHHHHhc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD---PNAGHVLLDNVDIKTLQLRWLRD 176 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~~ 176 (987)
++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+....++
T Consensus 3 ~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 3 AKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred eeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 789999999974 358999999999999999999999999999999999984 69999999999998877777788
Q ss_pred ceEEEcCCCCCchhcHHHHHhcCCCCC----C-H---HHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHH
Q 001980 177 QIGLVNQEPALFATTILENILYGKPEA----T-M---AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIA 248 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~tv~eni~~~~~~~----~-~---~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRia 248 (987)
.|+|++|++.+|+.|++||+.++.... . . +++.+.++..++.+ .+.+...+.+.+||||||||++
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFE-------EVKDKLKQNALALSGGQQQRLC 152 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCCh-------hhhHHhcCCcccCCHHHHHHHH
Confidence 999999999999999999998753210 0 0 11222222222211 1123456678899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 249 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|||||+++|+++||||||++||+.++..+.+.|.++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++...
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999988778999999999998865 899999999999999999988653
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=362.48 Aligned_cols=203 Identities=27% Similarity=0.468 Sum_probs=179.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+. ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999953 3699999999999999999999999999999999999999999999999998765 56788999
Q ss_pred EEccccccc-cccHHHHhccCC--CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 001980 825 LVQQEPALF-AASIFDNIAYGK--EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901 (987)
Q Consensus 825 ~VpQdp~lF-~gTIreNL~~~~--~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~ 901 (987)
|+||++.+| ..|++||+.++. ...+++++.++++..++.+..... ...||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcC
Confidence 999999887 579999997642 123566788888888887655432 346999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001980 902 PAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 902 p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~G 963 (987)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999865 47899999999999865 8999999999999865
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=374.68 Aligned_cols=221 Identities=28% Similarity=0.454 Sum_probs=191.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5999999999963 3699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcccccccc-ccHHHHhccCCC----------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKE----------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~----------~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
+|+||++.+|. .|+++|+.++.. ...++++.++++.+++.++....| .+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHH
Confidence 99999987765 499999986421 112345778888888866544332 36999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHh
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl 969 (987)
+|||||+.+|+||||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999999874 3799999999999986 58999999999999999999986
Q ss_pred cCCCchHHHHH
Q 001980 970 SRPDGAYSRLL 980 (987)
Q Consensus 970 ~~~~g~f~~l~ 980 (987)
.. .....++
T Consensus 237 ~~--~~~~~~~ 245 (265)
T PRK10575 237 RG--ETLEQIY 245 (265)
T ss_pred CH--HHHHHHh
Confidence 43 3344444
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=369.86 Aligned_cols=212 Identities=24% Similarity=0.446 Sum_probs=183.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH-hccc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-RLKI 823 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l-R~~i 823 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |+.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 359999999999999999999999999999999999999999999999999988776654 5679
Q ss_pred EEEccccccccc-cHHHHhccCCCC--------------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 824 GLVQQEPALFAA-SIFDNIAYGKEG--------------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 824 ~~VpQdp~lF~g-TIreNL~~~~~~--------------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
+|+||++.+|.+ |++||+.++... ..++++.++++..++.+. .......|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADE-----------ADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHH
Confidence 999999999986 999999865321 012344555555554332 233445799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhH
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~e 967 (987)
|||++||||++++|++|||||||++||+++...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999999875 89999999999999999999
Q ss_pred Hhc
Q 001980 968 LVS 970 (987)
Q Consensus 968 Ll~ 970 (987)
++.
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=365.03 Aligned_cols=209 Identities=27% Similarity=0.509 Sum_probs=180.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 578999999953 3599999999999999999999999999999999999999999999999988763 356788999
Q ss_pred EEccccccccc-cHHHHhccCCC--CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKE--GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~--~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||++.+|.. |+++|+.++.. .. .++++.++++..++.++.... + ..||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~----~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-------V----KTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-------h----hhCCHHHHHHHHHHHH
Confidence 99999998874 99999975311 11 234567778888876654332 2 3699999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
++.+|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999998753 7899999999999865 899999999999999998875
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=386.66 Aligned_cols=220 Identities=33% Similarity=0.518 Sum_probs=191.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
..|+++|++++|.+ .++|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++.+++. .|+.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999953 358999999999999999999999999999999999999999999999999987764 4789
Q ss_pred cEEEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 823 IGLVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 823 i~~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
++||+|++.+|.. |++|||.++.. ..+ .+++.++++..++.++.++.| .+||||||||++||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999999999975 99999987632 122 234567777777766554443 46999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcCC
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRP 972 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~~ 972 (987)
|||+++|++||||||||+||..+...+.+.|++.. .+.|+|+|||+++.+. -+|+|++|++|++++.|+|+++..++
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999998888764 3789999999999875 48999999999999999999999887
Q ss_pred CchHHH
Q 001980 973 DGAYSR 978 (987)
Q Consensus 973 ~g~f~~ 978 (987)
...|..
T Consensus 242 ~~~~~a 247 (377)
T PRK11607 242 TTRYSA 247 (377)
T ss_pred ccHHHH
Confidence 766543
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=367.00 Aligned_cols=204 Identities=35% Similarity=0.506 Sum_probs=174.1
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH----H
Q 001980 745 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS----L 819 (987)
Q Consensus 745 I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~----l 819 (987)
|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996421 136999999999999999999999999999999999999999999999999998876432 4
Q ss_pred hcccEEEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 820 RLKIGLVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 820 R~~i~~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
|++++|+||++.+|.+ |++||+.++.. ... ++++.++++..++.+... ....+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN-----------HYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------cChhhcCHHHHHHH
Confidence 6789999999999976 99999986432 111 234566677766654433 23357999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEE
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRI 959 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~D~Iivl~~G~i 959 (987)
+|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998754 7899999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=352.58 Aligned_cols=178 Identities=34% Similarity=0.642 Sum_probs=166.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++. +.++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999643 23599999999999999999999999999999999999999999999999988776 667889999
Q ss_pred EEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 001980 825 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 904 (987)
Q Consensus 825 ~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~I 904 (987)
|+||+|.+|+.|++||+ ...||+|||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 347999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEec
Q 001980 905 LLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQG 963 (987)
Q Consensus 905 LlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~G 963 (987)
|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887789999999999999889999999999999865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=380.70 Aligned_cols=213 Identities=28% Similarity=0.512 Sum_probs=184.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.|+|.|+...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5999999999953 35999999999999999999999999999999999999999999999999998755 4578999
Q ss_pred EEEcccccccc-ccHHHHhccCCC--CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKE--GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~--~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+|+||++.+|. .|++||+.+... ..+.. .+.++++..++. +..+++++ +||+|||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~----~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-------NKADAKVG----ELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-------hHhcCchh----hCCHHHHHHHHHHH
Confidence 99999999885 699999975321 12222 334555555543 34555554 69999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||+++|++|+|||||++||+.+...+++.|+++. +++|||++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999975 47899999999999865 899999999999999999999754
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=343.63 Aligned_cols=221 Identities=30% Similarity=0.458 Sum_probs=191.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-Hhcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 177 (987)
.++++|++..|+. ..+|++|||++++||+++|+|+||+|||||+|+|+|+.+|.+|+|.++|+|++..++.. .|..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4789999999974 45999999999999999999999999999999999999999999999999999998765 5667
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|+||||.-.+|+. ||+||+..|......++.. ....++..+.+| -+......++.+|||||||-+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~----~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQ----ERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccc----cccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 9999999999977 9999999874322211111 111334556677 466778889999999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
|++|+|||||.+|-|.-.+.|++.|+++++ +.||++|.++...... +||.|+|++|+|+.+|+.+++..+.
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 999999999999999999999999999974 6799999999998654 8999999999999999999997653
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=374.05 Aligned_cols=214 Identities=30% Similarity=0.542 Sum_probs=186.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC-HHHHhccc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN-LKSLRLKI 823 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~-l~~lR~~i 823 (987)
|+++|++++|++ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|+++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999953 235999999999999999999999999999999999999999999999999998775 46788899
Q ss_pred EEEccccc--cccccHHHHhccCCCC--CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 824 GLVQQEPA--LFAASIFDNIAYGKEG--AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 824 ~~VpQdp~--lF~gTIreNL~~~~~~--~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
+|+||+|. ++..|+++||.++... .+ ++.+.++++..++.++... ....||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR-----------SPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------CcccCCHHHHHHHHHH
Confidence 99999985 5778999999865321 22 2345666777776655433 2357999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcC
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|||+++|+||||||||++||+.+...+++.|++.. +++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999999865 48999999999999988999999999999999999998754
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=367.77 Aligned_cols=213 Identities=26% Similarity=0.486 Sum_probs=181.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH-hccc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-RLKI 823 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l-R~~i 823 (987)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999963 359999999999999999999999999999999999999999999999999988776554 5789
Q ss_pred EEEccccccccc-cHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFAA-SIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~g-TIreNL~~~~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+|+||++.+|.+ |+++|+.++.. .... +++.+.++..++.+ .......+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH-----------LRKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHHHHH
Confidence 999999999986 99999986432 1121 22334444444433 233445679999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|++++|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 223 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhcC
Confidence 9999999999999999999999999999999875 47899999999987755 899999999999999999998653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=366.95 Aligned_cols=207 Identities=28% Similarity=0.484 Sum_probs=171.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHhc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WLRD 176 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~~ 176 (987)
++++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+++
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999642 23589999999999999999999999999999999999999999999999998766543 3677
Q ss_pred ceEEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 177 QIGLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
+++|++|++.++.. |++||+.++... ...+... ..+.+.++.+ |+.........+||||||||++|||||
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral 153 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDAN-----ERVSAALEKV--GLEGKAHALPMQLSGGEQQRVAIARAI 153 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 89999999998865 999999875211 1111111 1112233333 444455666679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEE
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQV 314 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i 314 (987)
+.+|+++||||||++||+.+++.+.+.|.++. .++|+|++||+++.+.. ||++++|++|++
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999875 48999999999999875 899999999974
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=370.45 Aligned_cols=221 Identities=35% Similarity=0.557 Sum_probs=182.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC---HHHHhc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ---LRWLRD 176 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~~~ 176 (987)
++++|++++|++. .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4689999999741 35899999999999999999999999999999999999999999999999988766 455677
Q ss_pred ceEEEcCCCCCch-hcHHHHHhcCCCCCC--HHHH---HHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHH
Q 001980 177 QIGLVNQEPALFA-TTILENILYGKPEAT--MAEV---EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250 (987)
Q Consensus 177 ~i~~v~Q~~~l~~-~tv~eni~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialA 250 (987)
.++|++|++.+|+ .|++||+.++..... .... ........+.+.++.+ |+.......+.+||||||||++||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la 156 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV--GLLDKAYQRADQLSGGQQQRVAIA 156 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc--CChhhhCCCcccCCHHHHHHHHHH
Confidence 8999999998887 599999987532100 0000 0000011122334444 565566778889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHH
Q 001980 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 251 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
|||+.+|+++||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 99999999999999999999999999999999875 3899999999999988 48999999999999999988863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=373.68 Aligned_cols=223 Identities=29% Similarity=0.510 Sum_probs=187.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~l 816 (987)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999963 359999999999999999999999999999999999987 699999999999853 456
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC--CCCH-----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--GATE-----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~sd-----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|++++|+||++.+|..|+++|+.++.. +.++ +.+.++++..++.+.+ .......+..||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-------~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL-------KDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchH-------HHHHhcCcccCCHHHH
Confidence 678899999999999999999999986421 1221 2234455555443222 2223445568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+++|+++.+.. ||+|++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 899999999999999999999
Q ss_pred hcCCCchH
Q 001980 969 VSRPDGAY 976 (987)
Q Consensus 969 l~~~~g~f 976 (987)
..++...|
T Consensus 254 ~~~~~~~~ 261 (271)
T PRK14238 254 FSNPSDKR 261 (271)
T ss_pred HcCCCCHH
Confidence 87654333
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=373.49 Aligned_cols=216 Identities=30% Similarity=0.481 Sum_probs=187.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|++. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999643 23589999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEccccc--cccccHHHHhccCCCC--CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 824 GLVQQEPA--LFAASIFDNIAYGKEG--AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 824 ~~VpQdp~--lF~gTIreNL~~~~~~--~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
+|+||+|. ++..|+++|+.++... .. ++++.++++..++.++.. ....+||+|||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHH
Confidence 99999984 4556899999765321 12 234566677777655433 23457999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcC
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||++++|++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998753 7899999999999888999999999999999999998765
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=370.34 Aligned_cols=214 Identities=35% Similarity=0.544 Sum_probs=180.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999974 358999999999999999999999999999999999999999999999999876543 246799
Q ss_pred EEcCCCCCch-hcHHHHHhcCCCCC------CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 180 LVNQEPALFA-TTILENILYGKPEA------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 180 ~v~Q~~~l~~-~tv~eni~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
|++|+|.+++ .|++||+.++.... ...+.. ..+.+.++.+ |+.........+||||||||++||||
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~a 150 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR-----AKVHELLKLV--QLDWLADRYPAQLSGGQRQRVALARA 150 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHH-----HHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 9999999886 49999998763211 111111 1122334444 55555667778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|+.+|+++||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 151 LAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 9999999999999999999999999999998853 7899999999998765 89999999999999999988754
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=357.36 Aligned_cols=217 Identities=36% Similarity=0.587 Sum_probs=191.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCc---cCCCCCHHHHh
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK---DIRRLNLKSLR 820 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~---di~~i~l~~lR 820 (987)
.|+++|++..|+. .++++|||++|+.||.+|+.||||||||||+++|.|+..|++|+|.+||. |.+++..+ .
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--D 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--h
Confidence 4788999999963 46899999999999999999999999999999999999999999999999 87775544 4
Q ss_pred cccEEEccccccc-cccHHHHhccCCC--------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 001980 821 LKIGLVQQEPALF-AASIFDNIAYGKE--------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 821 ~~i~~VpQdp~lF-~gTIreNL~~~~~--------~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 891 (987)
++||+|+|+..|| ..||++||.||.. ...+..+.+.|+.+++.++-++-| ..||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHH
Confidence 7899999999988 5799999999862 123445666788888877766555 5799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHH
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eL 968 (987)
+||||||..+|++|+||||.++||+.-.+.+++-|++... +.|+++|||+.+.+. -||||+||++|+|...|+|+|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999999998753 789999999998765 5899999999999999999999
Q ss_pred hcCCCchH
Q 001980 969 VSRPDGAY 976 (987)
Q Consensus 969 l~~~~g~f 976 (987)
...|++.|
T Consensus 226 ~~~P~s~f 233 (345)
T COG1118 226 YDHPASRF 233 (345)
T ss_pred hcCCCccc
Confidence 99888765
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=380.94 Aligned_cols=218 Identities=27% Similarity=0.461 Sum_probs=182.7
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ 81 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQR 81 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhc
Confidence 35999999999973 35999999999999999999999999999999999999999999999999987654 356788
Q ss_pred eEEEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 178 IGLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 178 i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
|||+||++.++. .|++||+.+.... ....+.... +.+.++.+ |+.........+||||||||++|||||+
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~aL~ 154 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL-----VPPLLEFA--KLENKADAKVGELSGGMKRRLTLARALV 154 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchHhcCchhhCCHHHHHHHHHHHHHh
Confidence 999999999886 4999999863221 111222111 12233333 4444445566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|++++|||||++||+.+++.+++.|+++. +|+|+|++||+++++.. ||||++|++|++++.|+++++.+.
T Consensus 155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 155 NDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999985 48999999999999976 899999999999999999998653
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=371.64 Aligned_cols=223 Identities=31% Similarity=0.491 Sum_probs=190.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCC--CC
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRR--LN 815 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~ 815 (987)
+.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36999999999953 3599999999999999999999999999999999999985 48999999999864 45
Q ss_pred HHHHhcccEEEccccccccccHHHHhccCCC------CCC-HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 816 LKSLRLKIGLVQQEPALFAASIFDNIAYGKE------GAT-EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 816 l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~------~~s-d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
...+|++++|+||++.+|..|++||+.++.. +.. ++.+.++++.+++.+++... + ...+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~----~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK---L----NKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH---h----cCCcccCCHHH
Confidence 5678899999999999999999999976421 111 23456777888876554322 2 33455799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEe-----CCEEEEe
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQ-----DGRIVEQ 962 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~-----~G~ive~ 962 (987)
|||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999998777999999999999865 79999998 5999999
Q ss_pred cChhHHhcCCCch
Q 001980 963 GSHSELVSRPDGA 975 (987)
Q Consensus 963 Gt~~eLl~~~~g~ 975 (987)
|+++++.+.+...
T Consensus 236 ~~~~~~~~~~~~~ 248 (259)
T PRK14260 236 GVTTQIFSNPLDS 248 (259)
T ss_pred CCHHHHhcCCCCh
Confidence 9999998764443
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=370.25 Aligned_cols=228 Identities=28% Similarity=0.511 Sum_probs=192.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCCC--CH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRRL--NL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~l 816 (987)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+.+| ++|+|.+||.++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999963 3599999999999999999999999999999999999763 489999999999876 45
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC--C-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--G-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
...|+.++|+||++.+|+.|++||+.++.. . ..++.+.++++.+++.+.+. +.....+..||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHH
Confidence 677889999999999999999999986521 1 11234556666666644332 223455668999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++||||++.+|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999998777999999999999865 899999999999999999999
Q ss_pred hcCCCchHHHHHH
Q 001980 969 VSRPDGAYSRLLQ 981 (987)
Q Consensus 969 l~~~~g~f~~l~~ 981 (987)
.+++...+.+.+.
T Consensus 236 ~~~~~~~~~~~~~ 248 (253)
T PRK14261 236 FENPHEELTENYI 248 (253)
T ss_pred HhCCCcHHHHHHh
Confidence 8765545555443
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=364.35 Aligned_cols=205 Identities=28% Similarity=0.489 Sum_probs=174.0
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH---Hh
Q 001980 745 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---LR 820 (987)
Q Consensus 745 I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~---lR 820 (987)
|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 136999999999999999999999999999999999999999999999999998877654 34
Q ss_pred -cccEEEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 821 -LKIGLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 821 -~~i~~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
++++|+||++.+|. .|++||+.++.. ... ++++.++++..++.+... .....||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN-----------HRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHH
Confidence 68999999999985 699999976321 111 234556666666544333 23357999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCCEEE
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDGRIV 960 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~~D~Iivl~~G~iv 960 (987)
+|||||+++|+||||||||++||+.+...+.+.|++.. .++|+|+|||+++.+..+|+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999875 378999999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=370.53 Aligned_cols=218 Identities=33% Similarity=0.519 Sum_probs=183.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC--------H
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN--------L 816 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~--------l 816 (987)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 899999999963 35999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhcccEEEcccccccc-ccHHHHhccCC---CCCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 817 KSLRLKIGLVQQEPALFA-ASIFDNIAYGK---EGATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~-gTIreNL~~~~---~~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
..+|++++||||++.+|. .|++||+.++. ..... +.+.++++..++.+. .......|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChHH
Confidence 567889999999999885 69999997531 11222 234445555554432 233456799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChh
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHS 966 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~ 966 (987)
|||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999875 47899999999999865 8999999999999999999
Q ss_pred HHhcCCCchH
Q 001980 967 ELVSRPDGAY 976 (987)
Q Consensus 967 eLl~~~~g~f 976 (987)
++.+.+.-.|
T Consensus 230 ~~~~~~~~~~ 239 (250)
T PRK11264 230 ALFADPQQPR 239 (250)
T ss_pred HHhcCCCCHH
Confidence 9976543333
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=378.52 Aligned_cols=220 Identities=26% Similarity=0.478 Sum_probs=182.8
Q ss_pred EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC---------
Q 001980 100 IEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT--------- 168 (987)
Q Consensus 100 i~~~~~~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~--------- 168 (987)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997432 1358999999999999999999999999999999999999999999999877532
Q ss_pred ---------------CCHHHHhcceEEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCc
Q 001980 169 ---------------LQLRWLRDQIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYS 229 (987)
Q Consensus 169 ---------------~~~~~~~~~i~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~ 229 (987)
.+...++++||||+|+| .+|..||+|||.|+... ...++..+. +.+.++.+ |++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~ 155 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR-----AAKYIELV--GLD 155 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCC
Confidence 13456778899999986 57788999999987431 222222211 12233443 554
Q ss_pred -ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccc-cCCEE
Q 001980 230 -TQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIR-NVDTV 306 (987)
Q Consensus 230 -t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~i 306 (987)
....+...+||||||||++|||||+.+|++|||||||++||+.++..+.+.|.++. .|+|||+|||+++.+. .||||
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv 235 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT 235 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEE
Confidence 45677888999999999999999999999999999999999999999999999885 4899999999999875 59999
Q ss_pred EEEeCCEEEEecChHHHHHh
Q 001980 307 AVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 307 ~~l~~G~i~~~g~~~~l~~~ 326 (987)
++|++|++++.|+.+++.+.
T Consensus 236 ~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 236 IFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEEECCEEEEECCHHHHhcC
Confidence 99999999999999998654
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-43 Score=337.98 Aligned_cols=220 Identities=32% Similarity=0.482 Sum_probs=186.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
+++.+++++|++ ...+++|+||+++.||+++|.|||||||||+|++|.+++.|++|.|++||.|... ++...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 688999999985 3458999999999999999999999999999999999999999999999998765 4556788999
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 180 LVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
.++-+..++.. |++|||.|...-....+-....+.+ +..+.+ ++...+..+..++|-|+||||+|||||++||+
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~---~l~k~l--~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~ 153 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIA---ELSKRL--QLLEYLDRRVGEFSTGMKQKVAIARALVHDPS 153 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHH---HHHHHh--ChHHHHHHHHhhhchhhHHHHHHHHHHhcCCC
Confidence 99977778765 9999999753211111111122222 333333 55666677788999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhhhC-CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 259 ILLLDEATSALDAGSESIVQEALDRLMV-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
+++||||||+||..+.+.+.+.+.+++. |++||+.||.+++++. ||+|+++++|+++..|+.+++.+..
T Consensus 154 i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 154 ILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 9999999999999999999999999875 9999999999999985 9999999999999999999987653
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=370.65 Aligned_cols=223 Identities=31% Similarity=0.491 Sum_probs=190.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~l 816 (987)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.+||.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999953 359999999999999999999999999999999999986 479999999999853 456
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCCC--C---CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKEG--A---TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~--~---sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 891 (987)
..+|++++|+||++.+|+.|+++|+.++... . .++++.++++.+++.+.+... ....+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDK-------LKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHH-------hcCCcccCCHHHHHH
Confidence 6788999999999999989999999865321 1 134456667777776554321 234456799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEe---------CCEEEE
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQ---------DGRIVE 961 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~---------~G~ive 961 (987)
++|||||+++|+||||||||++||+.+...+.+.|++..+++|||+|||+++.+.. ||+|++|+ +|+|++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999998777899999999998755 79999998 899999
Q ss_pred ecChhHHhcCCCchH
Q 001980 962 QGSHSELVSRPDGAY 976 (987)
Q Consensus 962 ~Gt~~eLl~~~~g~f 976 (987)
.|+++++.+.+...|
T Consensus 240 ~~~~~~~~~~~~~~~ 254 (264)
T PRK14243 240 FDRTEKIFNSPQQQA 254 (264)
T ss_pred eCCHHHHHhCCCcHH
Confidence 999999987654333
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=364.43 Aligned_cols=207 Identities=37% Similarity=0.590 Sum_probs=173.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 468999999974 358999999999999999999999999999999999999999999999999876543 356899
Q ss_pred EEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 180 LVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 180 ~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|++|++.++. .|++||+.++... .......+ .+.+.++.+ |+.........+||||||||++|||||+.+
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRA-----RVRELLELV--GLEGLLNRYPHELSGGQQQRVALARALARE 148 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 4999999875321 11111111 122334444 566666777789999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
|+++||||||++||+.+++.+.+.|.++. .|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999875 38999999999998765 8999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=369.09 Aligned_cols=220 Identities=35% Similarity=0.603 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-----CceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT-----AGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--i~l 816 (987)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 35999999999999999999999999999999999999997 6999999999865 345
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC--CC-C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~-s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|+.++||||+|.+|..|++||+.++.. .. . ++.+.++++..++++.+.. .....+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKD-------NLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhh-------HhhCCcccCCHHHH
Confidence 678999999999999999999999986531 11 1 2334556666676554432 23445668999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999987668999999999999876 699999999999999999999
Q ss_pred hcCCC
Q 001980 969 VSRPD 973 (987)
Q Consensus 969 l~~~~ 973 (987)
...+.
T Consensus 234 ~~~~~ 238 (251)
T PRK14249 234 FSRPR 238 (251)
T ss_pred HhCCC
Confidence 76543
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=374.36 Aligned_cols=220 Identities=31% Similarity=0.509 Sum_probs=185.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999742 24589999999999999999999999999999999999999999999999999887777778889
Q ss_pred EEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 179 GLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 179 ~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+|++|+| .+++.|++|||.++... ....+..+ .+.+.+..+ |+...+.....+||||||||++|||||+
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVE-----RVDQALRQV--GMEDFLNREPHRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHH-----HHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 9999998 35567999999886321 12221111 112223332 4554556667799999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|+++||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999998863 7999999999999888999999999999999999888654
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=367.07 Aligned_cols=216 Identities=37% Similarity=0.604 Sum_probs=184.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++|+|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 3889999999974 3489999999999999999999999999999999999999999999999999877777778899
Q ss_pred EEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 179 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 179 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
+|++|++.+|+.|++||+.++.......+ ..+.+.++.+ |+. ......+.+||||||||++|||||+.+|
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~-------~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKN-------VDVEYYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHH-------HHHHHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999999998999999987642111110 1112333333 443 2445677899999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+++||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999875 38999999999999875 899999999999999999988653
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-42 Score=367.28 Aligned_cols=214 Identities=30% Similarity=0.518 Sum_probs=183.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCC--CHHHHhcc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL--NLKSLRLK 822 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i--~l~~lR~~ 822 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 789999999963 3599999999999999999999999999999999999999999999999999864 34567889
Q ss_pred cEEEcccccccc-ccHHHHhccCCC---CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 823 IGLVQQEPALFA-ASIFDNIAYGKE---GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 823 i~~VpQdp~lF~-gTIreNL~~~~~---~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
++|+||++.+|. .|+++|+.++.. ..+. +.+.++++..++.+... .....||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAH-----------HYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHh-----------cChhhcCHHHHHHHHH
Confidence 999999998885 699999976421 1122 23445555555544332 3345799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCC
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRP 972 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~ 972 (987)
|||++++|++|||||||++||+++...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++.+
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 999999999999999999999999999999999875 47899999999999865 8999999999999999999997653
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=371.27 Aligned_cols=226 Identities=30% Similarity=0.447 Sum_probs=186.6
Q ss_pred EEEEeEEEECCCC------CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH
Q 001980 745 IELRHVDFAYPSR------PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 818 (987)
Q Consensus 745 I~f~~vsf~Y~~~------~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~ 818 (987)
|+++||+++|+.. .+.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 1346999999999999999999999999999999999999999999999999998876543
Q ss_pred ---HhcccEEEccccc--cc-cccHHHHhccCCC---C----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCC
Q 001980 819 ---LRLKIGLVQQEPA--LF-AASIFDNIAYGKE---G----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLS 885 (987)
Q Consensus 819 ---lR~~i~~VpQdp~--lF-~gTIreNL~~~~~---~----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 885 (987)
+|+.++|+||+|. ++ ..|+++|+.++.. . ..++++.++++..++.+. .....+..||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSE----------DADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh----------hhhCChhhCC
Confidence 6788999999983 44 4799999864311 1 123345666666665321 1223445799
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEe
Q 001980 886 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQ 962 (987)
Q Consensus 886 gGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~ 962 (987)
||||||++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999998753 7899999999999975 899999999999999
Q ss_pred cChhHHhcCCCchHHHHH
Q 001980 963 GSHSELVSRPDGAYSRLL 980 (987)
Q Consensus 963 Gt~~eLl~~~~g~f~~l~ 980 (987)
|++++++..++..++.+.
T Consensus 233 g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 233 CDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred CCHHHHcCCCCHHHHHHH
Confidence 999999875333444443
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=368.90 Aligned_cols=220 Identities=32% Similarity=0.526 Sum_probs=188.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCCC--CH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRRL--NL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~l 816 (987)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999963 3599999999999999999999999999999999999975 799999999999653 34
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC--CC-C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~-s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|++++|+||++.+|..|+++|+.++.. .. + ++++.++++.+++.+.+... .......||+|||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDD-------LKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhH-------hhCCcccCCHHHH
Confidence 567899999999999999999999986421 11 1 23456677777775433221 2334567999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999865 899999999999999999999
Q ss_pred hcCCC
Q 001980 969 VSRPD 973 (987)
Q Consensus 969 l~~~~ 973 (987)
...+.
T Consensus 234 ~~~~~ 238 (251)
T PRK14270 234 FLEPQ 238 (251)
T ss_pred hcCCC
Confidence 76543
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=374.11 Aligned_cols=216 Identities=29% Similarity=0.516 Sum_probs=182.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++|+|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+..+++++|
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999632 3489999999999999999999999999999999999999999999999999887777888899
Q ss_pred EEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 179 GLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 179 ~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+|++|+| .++..|++||+.++... ....+..+. +.+.++.+ |+.........+||||||||++|||||+
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~LSgG~~qrv~laraL~ 154 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERR-----VEEALKAV--RMWDFRDKPPYHLSYGQKKRVAIAGVLA 154 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHC--CCHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999998 56778999999986321 111111111 12223333 4444455566799999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHH
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 323 (987)
.+|+++||||||++||+.++..+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 155 MDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999999885 4899999999999985 5999999999999999998654
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=364.99 Aligned_cols=216 Identities=31% Similarity=0.464 Sum_probs=179.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcce
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL-RDQI 178 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~i 178 (987)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 478999999974 358999999999999999999999999999999999999999999999999987776543 5679
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
+|++|++.+|+. |++||+.++.......+.... +.+.++.++ +++......+.+||||||||++|||||+.+|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHH-----HHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999886 999999886432211111111 111222221 2333456677899999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999999875 48999999999998765 8999999999999999887764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=367.80 Aligned_cols=219 Identities=37% Similarity=0.581 Sum_probs=183.6
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHh
Q 001980 100 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WLR 175 (987)
Q Consensus 100 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~ 175 (987)
|+++|++++|++.. ..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999997431 12589999999999999999999999999999999999999999999999998776543 346
Q ss_pred cceEEEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 176 DQIGLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
+.++|++|++.+|+ .|++||+.++... ....... ..+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE-----ERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 78999999999997 4999999875321 1111111 1123345554 66666677778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|+.+|+++||||||++||+.+++.+.+.|.++. + |+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999999875 3 8999999999999865 89999999999999999887753
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=368.11 Aligned_cols=224 Identities=33% Similarity=0.559 Sum_probs=192.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~l 816 (987)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||.++.. .+.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 359999999999999999999999999999999999875 389999999999875 346
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC--CC-C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~-s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|++++|+||+|.+|.+|+++|+.++.. .. + ++.+.++++.+++.+++..+ ++ ..+..||+|||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~----~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK---LD----KSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH---Hh----CCcccCCHHHH
Confidence 678999999999999999999999986521 11 1 23456778888887665432 33 34557999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+.. +|+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999998876 699999999999999999999
Q ss_pred hcCCCchHH
Q 001980 969 VSRPDGAYS 977 (987)
Q Consensus 969 l~~~~g~f~ 977 (987)
...+.+.|.
T Consensus 233 ~~~~~~~~~ 241 (250)
T PRK14266 233 FINPKDKRT 241 (250)
T ss_pred HhCCCChHH
Confidence 877666554
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=379.94 Aligned_cols=228 Identities=25% Similarity=0.375 Sum_probs=187.8
Q ss_pred cEEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC----CCCceEEECCccCCCCCHHH
Q 001980 744 EIELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD----PTAGKVMIDGKDIRRLNLKS 818 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~----p~~G~I~idG~di~~i~l~~ 818 (987)
-|+++|++++|+.... .++|+||||+|++||.+||||+||||||||+++|.|+++ |++|+|.+||.|+.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999964322 359999999999999999999999999999999999997 48999999999999998776
Q ss_pred Hhc----ccEEEccccc--ccc-ccHHHH----hccCCC---CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCC
Q 001980 819 LRL----KIGLVQQEPA--LFA-ASIFDN----IAYGKE---GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQL 884 (987)
Q Consensus 819 lR~----~i~~VpQdp~--lF~-gTIreN----L~~~~~---~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 884 (987)
+|+ .|+||||+|. ++. -|+.+| +..... ....+.+.++++.+++.+.... .......|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--------l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR--------LDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--------HhCCchhC
Confidence 543 6999999995 332 355544 432211 1123456778888888653221 12344579
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEE
Q 001980 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVE 961 (987)
Q Consensus 885 SgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive 961 (987)
|||||||++|||||+.+|++||+||||++||+.+...|.+.|+++.+ +.|+|+|||+++.+. .||||+||++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998753 789999999999985 589999999999999
Q ss_pred ecChhHHhcCCCchHHHH
Q 001980 962 QGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 962 ~Gt~~eLl~~~~g~f~~l 979 (987)
.|+++++++++...|.+.
T Consensus 235 ~g~~~~~~~~p~hpyt~~ 252 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQA 252 (326)
T ss_pred ECCHHHHhhCCCChHHHH
Confidence 999999998877677654
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=368.83 Aligned_cols=221 Identities=32% Similarity=0.528 Sum_probs=181.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH---HHHhc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL---RWLRD 176 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~~ 176 (987)
++++|++++|+. +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2348999999999999999999999999999999999999999999999999876654 34577
Q ss_pred ceEEEcCCCCCchh-cHHHHHhcCCCCCC--HHHH---HHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHH
Q 001980 177 QIGLVNQEPALFAT-TILENILYGKPEAT--MAEV---EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~-tv~eni~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialA 250 (987)
+++|++|++.+|+. |++||+.++..... .... ........+.+.++.+ |+.......+.+||||||||++||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHH
Confidence 89999999998864 99999987632110 0000 0000011123344444 566666778889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 001980 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 251 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
|||+.+|+++||||||++||+.+++.+.+.|.++. .++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 99999999999999999999999999999999874 37999999999999865 8999999999999999988863
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=367.44 Aligned_cols=214 Identities=29% Similarity=0.474 Sum_probs=181.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC------CCCHH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR------RLNLK 817 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~------~i~l~ 817 (987)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .....
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999963 35999999999999999999999999999999999999999999999999873 12345
Q ss_pred HHhcccEEEccccccccc-cHHHHhccCC---CCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 818 SLRLKIGLVQQEPALFAA-SIFDNIAYGK---EGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 818 ~lR~~i~~VpQdp~lF~g-TIreNL~~~~---~~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
.+|++++|+||++.+|.+ |++||+.++. .... .+++.+.++..++.++... ...+||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~ 147 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADR-----------FPLHLSGGQQ 147 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHH
Confidence 678999999999999975 9999996421 1112 2234555566665544433 3357999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~e 967 (987)
||++||||++++|++|||||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 47999999999999865 89999999999999999999
Q ss_pred HhcC
Q 001980 968 LVSR 971 (987)
Q Consensus 968 Ll~~ 971 (987)
+.+.
T Consensus 228 ~~~~ 231 (242)
T PRK11124 228 FTQP 231 (242)
T ss_pred hcCc
Confidence 8654
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-42 Score=368.77 Aligned_cols=216 Identities=32% Similarity=0.515 Sum_probs=182.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCEeCCCC--CHH
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN-----AGHVLLDNVDIKTL--QLR 172 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~-----~G~i~~~g~~~~~~--~~~ 172 (987)
++++|++++|++. .+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 2 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGEK---EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECCe---eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 7899999999742 4899999999999999999999999999999999999998 99999999998753 345
Q ss_pred HHhcceEEEcCCCCCchhcHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhCCCCCc----ccccCCCCCCChHHHH
Q 001980 173 WLRDQIGLVNQEPALFATTILENILYGKPE---ATMAEVEAAASAANAHSFITLLPNGYS----TQVGERGVQLSGGQKQ 245 (987)
Q Consensus 173 ~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~----t~~~~~g~~LSgGqkq 245 (987)
.+++.++|+||++.+|+.|++||+.++... ....+..+. ..+.++.+ |+. ......+.+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEI-----VEESLKKA--ALWDEVKDRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHH-----HHHHHHHc--CCCcchhhHhhCCcccCCHHHHH
Confidence 667889999999999989999999875321 111111111 12233333 443 4566778899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
|++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999998865 8999999999999999998876
Q ss_pred H
Q 001980 325 A 325 (987)
Q Consensus 325 ~ 325 (987)
.
T Consensus 232 ~ 232 (247)
T TIGR00972 232 T 232 (247)
T ss_pred h
Confidence 4
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=388.40 Aligned_cols=222 Identities=24% Similarity=0.419 Sum_probs=186.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..++...++++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999974 3589999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEcCCCCC-chhcHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPAL-FATTILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l-~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+||+|++.+ ++.|++||+.++.... ..... .......+.+.++.+ |+.........+||||||||++|||||++
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~-~~~~~~~v~~~le~v--gl~~~~~~~~~~LSgGerQRv~IArAL~~ 156 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTW-TETDRAAVERAMERT--GVAQFADRPVTSLSGGERQRVLLARALAQ 156 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCC-CHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999987 4669999999874211 00000 000001112223333 45445566778999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+|++|||||||++||+.++..+++.|+++. .++|+|++||+++.+.. |||+++|++|++++.|++++++..
T Consensus 157 ~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 157 ATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 999999999999999999999999999886 48999999999999865 899999999999999999998754
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=366.10 Aligned_cols=214 Identities=25% Similarity=0.396 Sum_probs=180.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH-Hhcc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS-LRLK 822 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~-lR~~ 822 (987)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+... +|+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999963 35999999999999999999999999999999999999999999999999998887654 6788
Q ss_pred cEEEccccccccc-cHHHHhccCCCCCCHHH----HHHHHHHc-CchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 823 IGLVQQEPALFAA-SIFDNIAYGKEGATEAE----VVEAARAA-NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 823 i~~VpQdp~lF~g-TIreNL~~~~~~~sd~e----i~~al~~a-~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
++|+||++.+|.+ |+++|+.++....+.++ +.++++.. ++.+ -.+ .....||||||||++|||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-------~~~----~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-------RRI----QRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-------HHh----CchhhCCHHHHHHHHHHH
Confidence 9999999999985 99999987532122222 22333322 1211 122 234579999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|++++|+||||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 9999999999999999999999999999999875 4899999999999765 4899999999999999999999753
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=362.59 Aligned_cols=203 Identities=35% Similarity=0.595 Sum_probs=175.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 578999999964 3599999999999999999999999999999999999999999999999999766543 57899
Q ss_pred EEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||++.+|. .|+++|+.++.. ... ++++.++++..++.++.... ...||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRK-----------PKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCC-----------hhhCCHHHHHHHHHHHH
Confidence 9999999885 699999986421 112 23456667777776554433 24799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~G 963 (987)
++++|++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999875 37899999999998876 8999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-42 Score=380.68 Aligned_cols=228 Identities=28% Similarity=0.463 Sum_probs=188.1
Q ss_pred cEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC---CceEEECCccCCCCCHHHH
Q 001980 744 EIELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT---AGKVMIDGKDIRRLNLKSL 819 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~---~G~I~idG~di~~i~l~~l 819 (987)
.++++|++++|+.+. ..++|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.|+.+++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 489999999996421 246999999999999999999999999999999999999996 9999999999999987765
Q ss_pred h----cccEEEccccc--ccc-ccHHHHhccC---CCCCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCC
Q 001980 820 R----LKIGLVQQEPA--LFA-ASIFDNIAYG---KEGATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLS 885 (987)
Q Consensus 820 R----~~i~~VpQdp~--lF~-gTIreNL~~~---~~~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 885 (987)
| ++|+||||||. ++. .|+.+|+... ....+.+ .+.+.++.+++. ++.+ .+...+..||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~-------~~~~-~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMP-------EARK-RMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-------ChHH-HhcCCcccCC
Confidence 3 47999999993 443 4777766421 1112322 344555555543 2221 2345567899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEe
Q 001980 886 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQ 962 (987)
Q Consensus 886 gGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~ 962 (987)
||||||++|||||+.+|++||+||||++||..+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998754 7899999999999874 899999999999999
Q ss_pred cChhHHhcCCCchHHHH
Q 001980 963 GSHSELVSRPDGAYSRL 979 (987)
Q Consensus 963 Gt~~eLl~~~~g~f~~l 979 (987)
|+++++++++...|.+.
T Consensus 244 g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 244 GNARDVFYQPSHPYSIG 260 (330)
T ss_pred CCHHHHHhCCCCHHHHH
Confidence 99999998877777764
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=357.27 Aligned_cols=218 Identities=35% Similarity=0.521 Sum_probs=186.6
Q ss_pred cEEEEeEEEECCCCCC---------------------ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 001980 99 NIEFKNVTFSYPSRPD---------------------VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 157 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~---------------------~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G 157 (987)
.|+++|+++-|+.++. ...++|+||+|+.||+..|.|-||||||||++++.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4889999999974321 2358999999999999999999999999999999999999999
Q ss_pred EEEECCEeCCCCCHHHHh----cceEEEcCCCCCchh-cHHHHHhcCCCCC------CHHHHHHHHHHHhHHHHHHhCCC
Q 001980 158 HVLLDNVDIKTLQLRWLR----DQIGLVNQEPALFAT-TILENILYGKPEA------TMAEVEAAASAANAHSFITLLPN 226 (987)
Q Consensus 158 ~i~~~g~~~~~~~~~~~~----~~i~~v~Q~~~l~~~-tv~eni~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 226 (987)
+|.++|.|+..++.+.+| +++++|+|+..|++- ||.||..||.+-. ..++..++++.+++..+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~------ 157 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGY------ 157 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhh------
Confidence 999999999999876543 479999999999976 9999999997522 12333444445544444
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-C
Q 001980 227 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-V 303 (987)
Q Consensus 227 g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~ 303 (987)
-...+.+||||+||||.|||||..+|+|||+|||+|||||--+..+++.|.++.+ +||+|+||||+++.-+ .
T Consensus 158 -----~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 158 -----ADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -----hhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 4445569999999999999999999999999999999999999999999988753 8999999999998766 6
Q ss_pred CEEEEEeCCEEEEecChHHHHHhh
Q 001980 304 DTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 304 d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
|||.+|++|+|+..|+++|+..+.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCc
Confidence 999999999999999999998764
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-42 Score=383.52 Aligned_cols=209 Identities=32% Similarity=0.484 Sum_probs=180.0
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCc----cCCCCCHHHH---h-cccEEEccccc
Q 001980 760 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK----DIRRLNLKSL---R-LKIGLVQQEPA 831 (987)
Q Consensus 760 ~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~----di~~i~l~~l---R-~~i~~VpQdp~ 831 (987)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|++||. |+...+.+.+ | ++|+||||++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 35899999999999999999999999999999999999999999999995 7777766554 3 58999999999
Q ss_pred ccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 001980 832 LFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 904 (987)
Q Consensus 832 lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~I 904 (987)
+|. .|++||+.++.. ..+ .+...++++.+++.++....| .+||||||||++|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 799999987531 122 234567788888776644333 46999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcCCCchHHHH
Q 001980 905 LLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 905 LlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l 979 (987)
||||||||+||+.+...+++.|.+..+ ++|+|+|||+++.+. .||+|++|++|++++.|++++++.++...|.+.
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~~ 263 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVAD 263 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHHH
Confidence 999999999999999999999998753 789999999999875 589999999999999999999998766555543
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=385.25 Aligned_cols=217 Identities=32% Similarity=0.519 Sum_probs=185.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...++ .++.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999974 348999999999999999999999999999999999999999999999999987664 3568
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
||||+|++.+|+. ||+|||.|+... ....+..+ .+.+.++.+ |+.........+|||||||||+|||||+
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~LSgGq~QRVaLARAL~ 165 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLV--HMQEFAKRKPHQLSGGQRQRVALARSLA 165 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 9999999999976 999999987431 12222211 122334444 5555667778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|++||||||||+||+.+++.+.+.|+++. .+.|+|+|||+++++.. +|+|++|++|++++.|+++++..+
T Consensus 166 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 166 KRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999888774 37999999999998755 899999999999999999998765
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=375.59 Aligned_cols=220 Identities=30% Similarity=0.521 Sum_probs=182.4
Q ss_pred cccEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC----C-
Q 001980 742 RGEIELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR----L- 814 (987)
Q Consensus 742 ~g~I~f~~vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~----i- 814 (987)
.+.|+++|++++|++++ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 36799999999996432 1359999999999999999999999999999999999999999999999999852 2
Q ss_pred CHHHHhcccEEEcccc--ccccccHHHHhccCCC--CCCHHH----HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 001980 815 NLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEAE----VVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 886 (987)
Q Consensus 815 ~l~~lR~~i~~VpQdp--~lF~gTIreNL~~~~~--~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 886 (987)
+...+|++++|+||+| .+|..|+++|+.++.. ....++ +.+.++..++ ++++ .......|||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~---~~~~~~~LS~ 153 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PEDY---VKRSPFELSG 153 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------ChhH---hcCChhhCCH
Confidence 4567889999999998 4778899999986432 123332 2334444443 2111 2234457999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEec
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQG 963 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~G 963 (987)
|||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+. .||+|++|++|++++.|
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999998753 789999999999875 48999999999999999
Q ss_pred ChhHHhcC
Q 001980 964 SHSELVSR 971 (987)
Q Consensus 964 t~~eLl~~ 971 (987)
++++++..
T Consensus 234 ~~~~~~~~ 241 (289)
T PRK13645 234 SPFEIFSN 241 (289)
T ss_pred CHHHHhcC
Confidence 99988654
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=371.39 Aligned_cols=218 Identities=31% Similarity=0.523 Sum_probs=181.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CCH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--LQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 171 (987)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4899999999974 348999999999999999999999999999999999974 689999999999864 344
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCC--C-CH----HHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPE--A-TM----AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~--~-~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
..++++++|++|++.+|+.|++||+.++... . .. +++.++++..++.+ .+.+..++.+.+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWD-------EVKDRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCch-------hhhHHhhCCcccCCHHHH
Confidence 5677899999999999988999999875311 1 11 12222222222211 112345677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998768999999999999865 899999999999999999887
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 643
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=364.29 Aligned_cols=205 Identities=38% Similarity=0.570 Sum_probs=176.0
Q ss_pred EEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 745 IELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
|+++|++++|++... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 478999999964111 469999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEcccccccc-ccHHHHhccCCC--CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKE--GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~--~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+|+||+|.+|. .|+++|+.++.. .. .++++.++++..++.++....+ ..||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence 99999999987 699999976421 11 2345677777777766554433 469999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEe--CCEEEEecCh
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQ--DGRIVEQGSH 965 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~--~G~ive~Gt~ 965 (987)
||+++|++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|+ +|++++.++.
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999999874 37899999999998755 89999999 7999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=356.47 Aligned_cols=202 Identities=34% Similarity=0.578 Sum_probs=177.6
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
+.++++|++++|+.. ..++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...++++
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 459999999999743 2358999999999999999999999999999999999999999999999999987777778889
Q ss_pred eEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 178 IGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 178 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
|+|++|+|.+|++|++||+.+... ...+++.++ +. +++++..|||||+||++|||||+.+|
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~---------l~---------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGA---------LR---------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC-CCHHHHHHH---------hh---------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 999999999999999999976532 222222221 11 34567899999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecC
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT 319 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 319 (987)
+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..+|++++|++|++++.|+
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999999999998877899999999999987799999999999998775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=373.79 Aligned_cols=217 Identities=29% Similarity=0.533 Sum_probs=182.9
Q ss_pred cEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCC----CHH
Q 001980 744 EIELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL----NLK 817 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~l~ 817 (987)
.|+++|++++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 13699999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhcccEEEcccc--ccccccHHHHhccCCC--CCCHH----HHHHHHHHcCch-hhHhhCCCcCCCccCCCCCCCChhH
Q 001980 818 SLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEA----EVVEAARAANVH-GFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 818 ~lR~~i~~VpQdp--~lF~gTIreNL~~~~~--~~sd~----ei~~al~~a~l~-~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
..|+.++|+||+| .+|..|++|||.++.. ..+.+ .+.++++..++. ++. ......|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI-----------SKSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-----------hCCcccCCHHH
Confidence 6788999999998 5788899999975421 22222 345555666553 222 23345799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChh
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHS 966 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~ 966 (987)
|||++|||||+++|++|||||||++||+.+...+.+.|+++. ++.|||++||+++.+. -||+|++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999875 4789999999999885 58999999999999999999
Q ss_pred HHhcC
Q 001980 967 ELVSR 971 (987)
Q Consensus 967 eLl~~ 971 (987)
++++.
T Consensus 231 ~~~~~ 235 (287)
T PRK13641 231 EIFSD 235 (287)
T ss_pred HHhcC
Confidence 98754
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=387.20 Aligned_cols=216 Identities=30% Similarity=0.488 Sum_probs=183.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 3899999999974 3489999999999999999999999999999999999999999999999999776553 4679
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+|++|++.+|+. ||+||+.++... ....+..+ .+.+.++.+ |++........+||||||||++|||||+.
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ-----RVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999976 999999986431 11111111 122334444 56656677778999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+|++|||||||++||+.+++.+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++...
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998753 8999999999998765 899999999999999999998654
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-42 Score=373.90 Aligned_cols=227 Identities=34% Similarity=0.516 Sum_probs=190.1
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCCC--C
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRRL--N 815 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~i--~ 815 (987)
..|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35899999999963 359999999999999999999999999999999999865 4999999999998653 3
Q ss_pred HHHHhcccEEEccccccccccHHHHhccCCC--CC-C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 816 LKSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 816 l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~-s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
...+|++++|+||+|.+|.+|++|||.++.. .. + ++.+.++++..++.+.+. +.++ .....|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~----~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS---DRLD----KNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---hHhh----CChhhCCHHH
Confidence 3467899999999999999999999986421 11 1 234556677776654322 1223 3445799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhH
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~e 967 (987)
|||++|||||+++|++|||||||++||+++...+.+.|+++.+++|||++||+++.+.. ||+|++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988777899999999999865 89999999999999999999
Q ss_pred HhcCCCchHHHH
Q 001980 968 LVSRPDGAYSRL 979 (987)
Q Consensus 968 Ll~~~~g~f~~l 979 (987)
+.+++...|.+.
T Consensus 268 ~~~~~~~~~~~~ 279 (286)
T PRK14275 268 LFTNPKDRMTED 279 (286)
T ss_pred HHhCCCcHHHHH
Confidence 987655445443
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=367.65 Aligned_cols=211 Identities=28% Similarity=0.464 Sum_probs=178.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH-Hhccc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS-LRLKI 823 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~-lR~~i 823 (987)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 578999999963 36999999999999999999999999999999999999999999999999998877654 46789
Q ss_pred EEEccccccccc-cHHHHhccCCCCC--CHHH-HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 824 GLVQQEPALFAA-SIFDNIAYGKEGA--TEAE-VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 824 ~~VpQdp~lF~g-TIreNL~~~~~~~--sd~e-i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
+|+||++.+|.. |+++|+.++.... .+++ ..++++..+ +++.........||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999986 9999998653221 1222 233333332 1122223344579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
++|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999998763 7899999999999986 899999999999999999998
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=369.47 Aligned_cols=221 Identities=26% Similarity=0.481 Sum_probs=191.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++..++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 36999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEccccccccc-cHHHHhccCCC----------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKE----------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~----------~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
|+||++.+|.+ |+++|+.++.. ...++++.++++..++.++... ....||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----------RLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----------CcccCCHHHHHHHH
Confidence 99999998876 99999987521 1123456677777777654332 23579999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||||++++|++|||||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 228 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH
Confidence 9999999999999999999999999999999999875 47899999999999865 899999999999999999998753
Q ss_pred CCchHHHHHH
Q 001980 972 PDGAYSRLLQ 981 (987)
Q Consensus 972 ~~g~f~~l~~ 981 (987)
..+.+.+.
T Consensus 229 --~~~~~~~~ 236 (255)
T PRK11231 229 --GLLRTVFD 236 (255)
T ss_pred --HHHHHHhC
Confidence 34555553
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-42 Score=367.05 Aligned_cols=204 Identities=32% Similarity=0.481 Sum_probs=179.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|+++
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 4999999999963 35999999999999999999999999999999999999999999999998763 567899
Q ss_pred EEEcccccccc-ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 902 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p 902 (987)
+|+||++.+|. .|++||+.++.....++++.++++..++.++... ...+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANE-----------WPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 6999999875432235667788888877654432 33579999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChh
Q 001980 903 AILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHS 966 (987)
Q Consensus 903 ~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~ 966 (987)
++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998864 37899999999998754 8999999999999988764
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=369.92 Aligned_cols=221 Identities=29% Similarity=0.484 Sum_probs=188.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCCCC-HH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRRLN-LK 817 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i~-l~ 817 (987)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999963 3699999999999999999999999999999999999986 6999999999998763 45
Q ss_pred HHhcccEEEccccccccccHHHHhccCCC---CCCHHHH----HHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 818 SLRLKIGLVQQEPALFAASIFDNIAYGKE---GATEAEV----VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 818 ~lR~~i~~VpQdp~lF~gTIreNL~~~~~---~~sd~ei----~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
.+|++++|+||+|.+|..|+++|+.++.. ..++++. .+.++..++.+.. ++.......+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHHH
Confidence 67899999999999999999999986531 1344443 3344555554322 22334556689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
|++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999999865 8999999999999999999998
Q ss_pred cCCCc
Q 001980 970 SRPDG 974 (987)
Q Consensus 970 ~~~~g 974 (987)
+.+..
T Consensus 251 ~~~~~ 255 (276)
T PRK14271 251 SSPKH 255 (276)
T ss_pred hCcCc
Confidence 76433
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=361.08 Aligned_cols=201 Identities=40% Similarity=0.687 Sum_probs=173.4
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEE
Q 001980 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 825 (987)
Q Consensus 746 ~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~ 825 (987)
+++|++++|++. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 478999999642 2469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred Ecccc--ccccccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 826 VQQEP--ALFAASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 826 VpQdp--~lF~gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
+||++ .++..|+++|+.++.. ..+ ++++.+.++..++.++..+ ....||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDR-----------SPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHHHHH
Confidence 99998 3678899999976421 112 2345566676666554432 235799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCE
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGR 958 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ 958 (987)
|+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999875 47899999999999987 89999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=368.02 Aligned_cols=217 Identities=33% Similarity=0.547 Sum_probs=183.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999742 34899999999999999999999999999999999999999999999999998877777788999
Q ss_pred EEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcc--cccCCCCCCChHHHHHHHHHHHhc
Q 001980 180 LVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYST--QVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 180 ~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t--~~~~~g~~LSgGqkqRialARal~ 254 (987)
|++|++.+|+ .|++||+.++... ....+. ...+.+.++.+ |+.. ...+.+.+||||||||++|||||+
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999986 5999999875321 111111 11223444544 5553 567778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
++|+++||||||++||+.+++.+.+.|.++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999999885 38999999999998765 89999999999999999888754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=365.40 Aligned_cols=212 Identities=38% Similarity=0.607 Sum_probs=186.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|++||+++.+.+. .|+.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 479999999963 359999999999999999999999999999999999999999999999999987664 368899
Q ss_pred EEccccccccc-cHHHHhccCCC------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKE------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~------~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||++.+|.+ |+++|+.++.. ...++++.++++..++.++....| .+||+|||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 99999975421 112446677778888876665444 4799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCC
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRP 972 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~ 972 (987)
|+++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~ 222 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCC
Confidence 9999999999999999999999999999998753 7999999999999865 7999999999999999999998653
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=369.15 Aligned_cols=225 Identities=31% Similarity=0.535 Sum_probs=191.8
Q ss_pred CccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCC--
Q 001980 740 TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIR-- 812 (987)
Q Consensus 740 ~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~-- 812 (987)
+..+.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 12 ~~~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~ 88 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88 (265)
T ss_pred CCCceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccc
Confidence 34567999999999963 3599999999999999999999999999999999999875 7999999998874
Q ss_pred --CCCHHHHhcccEEEccccccccccHHHHhccCCC--C-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCC
Q 001980 813 --RLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE--G-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ 883 (987)
Q Consensus 813 --~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~ 883 (987)
......+|++++|+||++.+|.+|+++|+.++.. . ..++++.++++.+++.+.+. .........
T Consensus 89 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~ 161 (265)
T PRK14252 89 SPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFN 161 (265)
T ss_pred ccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCccc
Confidence 3445678899999999999999999999986421 1 12456677777777654332 223344568
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEe
Q 001980 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQ 962 (987)
Q Consensus 884 LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~ 962 (987)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 162 LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~ 241 (265)
T PRK14252 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEF 241 (265)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999998777899999999999865 899999999999999
Q ss_pred cChhHHhcCCCc
Q 001980 963 GSHSELVSRPDG 974 (987)
Q Consensus 963 Gt~~eLl~~~~g 974 (987)
|+++++..++..
T Consensus 242 g~~~~~~~~~~~ 253 (265)
T PRK14252 242 GATDTIFIKPKN 253 (265)
T ss_pred CCHHHHHhCCCC
Confidence 999999765433
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=364.44 Aligned_cols=216 Identities=28% Similarity=0.487 Sum_probs=184.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... ++.++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999973 35899999999999999999999999999999999999999999999999987766544 35899
Q ss_pred EEcCCCCCc-hhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 180 LVNQEPALF-ATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 180 ~v~Q~~~l~-~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|++|++.++ ..|++||+.++... ....+.. ..+.+.++.+ |+.......+.+||||||||++|||||+++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999885 56999999875321 1111111 1123445554 677677888889999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|+++||||||++||+.+++.+.+.|.++. +++|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999885 48999999999999888999999999999999999888654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=363.39 Aligned_cols=215 Identities=25% Similarity=0.466 Sum_probs=178.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 4789999999742 145899999999999999999999999999999999999999999999999986543 55677899
Q ss_pred EEcCCCCCch-hcHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 180 LVNQEPALFA-TTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 180 ~v~Q~~~l~~-~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|++|++.+++ .|++||+.+... ....++..+ .+.+.++.+ |+.........+||||||||++|||||+.+
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKE-----EVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 9999999885 599999987421 111111111 112333333 444445566779999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999998777999999999999865 899999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=364.42 Aligned_cols=237 Identities=25% Similarity=0.412 Sum_probs=198.8
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 001980 71 YKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 71 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g 150 (987)
+.+.+.+..+++... ....+.....|+++|+++.. .++|+|+||+|++||+++|+|+||||||||+++|+|
T Consensus 15 ~~~~~~~~~~~~~~~----~~~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~G 85 (282)
T cd03291 15 EGFGELLEKAKQENN----DRKHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILG 85 (282)
T ss_pred HHHHHHHhccccccc----ccccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 356666666543221 12223344569999999962 248999999999999999999999999999999999
Q ss_pred CCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcc
Q 001980 151 FYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYST 230 (987)
Q Consensus 151 ~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t 230 (987)
+++|++|+|.++| .|+|++|++++++.|++||+.++... ...++...++..++.+.+..+|.+.++
T Consensus 86 l~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~~-~~~~~~~~l~~~~l~~~l~~~~~~~~~ 151 (282)
T cd03291 86 ELEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVSY-DEYRYKSVVKACQLEEDITKFPEKDNT 151 (282)
T ss_pred CCCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhccccc-CHHHHHHHHHHhCCHHHHHhccccccc
Confidence 9999999999998 59999999999999999999986432 223445556666777888889999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHH-HhhhCCCeEEEEcCCCCccccCCEEEEE
Q 001980 231 QVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL-DRLMVGRTTVVVAHRLSTIRNVDTVAVI 309 (987)
Q Consensus 231 ~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~vtH~~~~~~~~d~i~~l 309 (987)
.+++.+.+||||||||++|||||+++|++|||||||++||+.+++.+.+.+ ..+.+++|+|++||+++.+..||++++|
T Consensus 152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l 231 (282)
T cd03291 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILIL 231 (282)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999888754 5555689999999999998889999999
Q ss_pred eCCEEEEecChHHHHHhhhhH
Q 001980 310 QQGQVVETGTHEELIAKAGAY 330 (987)
Q Consensus 310 ~~G~i~~~g~~~~l~~~~~~~ 330 (987)
++|++++.|+++++.+....+
T Consensus 232 ~~G~i~~~g~~~~~~~~~~~~ 252 (282)
T cd03291 232 HEGSSYFYGTFSELQSLRPDF 252 (282)
T ss_pred ECCEEEEECCHHHHHhcchHH
Confidence 999999999999987644333
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=373.37 Aligned_cols=217 Identities=32% Similarity=0.544 Sum_probs=182.8
Q ss_pred EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCC----CHHH
Q 001980 745 IELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL----NLKS 818 (987)
Q Consensus 745 I~f~~vsf~Y~~~~--~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~l~~ 818 (987)
|+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996431 13699999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhcccEEEcccc--ccccccHHHHhccCCC--CCCHHH----HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 819 LRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEAE----VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 819 lR~~i~~VpQdp--~lF~gTIreNL~~~~~--~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
+|++|+|+||+| .+|+.|+++|+.++.. ..+.++ +.++++..++.+. ........|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHHH
Confidence 889999999998 6888999999976421 123333 3344555555321 122334579999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
|++|||||+++|++|||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999875 47899999999998865 899999999999999999998
Q ss_pred hcC
Q 001980 969 VSR 971 (987)
Q Consensus 969 l~~ 971 (987)
++.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 764
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=361.57 Aligned_cols=201 Identities=37% Similarity=0.598 Sum_probs=175.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH---HHhc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLRL 821 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~---~lR~ 821 (987)
|+++|++++|++ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 23699999999999999999999999999999999999999999999999999887643 4688
Q ss_pred ccEEEcccccccc-ccHHHHhccCCC------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 822 KIGLVQQEPALFA-ASIFDNIAYGKE------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 822 ~i~~VpQdp~lF~-gTIreNL~~~~~------~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
.++|+||+|.+|. .|+++|+.++.. ...+++++++++..++.+.....| .+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999985 699999976421 112456778888888776554433 4699999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCE
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGR 958 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ 958 (987)
||||+++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999875 48999999999999886 79999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=361.18 Aligned_cols=202 Identities=33% Similarity=0.531 Sum_probs=174.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH---HHHhc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL---KSLRL 821 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l---~~lR~ 821 (987)
|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999642 359999999999999999999999999999999999999999999999999987754 34788
Q ss_pred ccEEEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 822 KIGLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 822 ~i~~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
.++|+||++.+|. .|+++|+.++.. ..+ ++++.++++..++.+..... ..+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRAL-----------PAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHH
Confidence 9999999999987 599999986421 112 33566777777776554433 24799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEE
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRI 959 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~i 959 (987)
||||+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999874 57999999999999976 799999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-42 Score=372.14 Aligned_cols=213 Identities=30% Similarity=0.483 Sum_probs=182.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC--CCCHHHHhcc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--RLNLKSLRLK 822 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~l~~lR~~ 822 (987)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999963 35999999999999999999999999999999999999999999999999985 3445678899
Q ss_pred cEEEccccc--cccccHHHHhccCC--CCCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 823 IGLVQQEPA--LFAASIFDNIAYGK--EGATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 823 i~~VpQdp~--lF~gTIreNL~~~~--~~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
++|+||+|. +|..|+.+|+.++. ...+. +++.++++..++.++. +++ ...||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-------HQP----IQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-------cCC----chhCCHHHHHHHHH
Confidence 999999985 57789999997641 11222 3345667777765543 222 34799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||||+.+|+||||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999875 47899999999999855 899999999999999999998764
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=363.96 Aligned_cols=208 Identities=35% Similarity=0.506 Sum_probs=174.3
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH----HH
Q 001980 100 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR----WL 174 (987)
Q Consensus 100 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~----~~ 174 (987)
|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999997421 13589999999999999999999999999999999999999999999999998776542 24
Q ss_pred hcceEEEcCCCCCchh-cHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 175 RDQIGLVNQEPALFAT-TILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 175 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
+++++|++|++.+|+. |++||+.++.... ...... ..+.+.++.+ |++......+.+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERR-----ERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHH-----HHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 5689999999999876 9999998864211 111111 1223445554 6666667778899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccccCCEEEEEeCCEE
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQV 314 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~~l~~G~i 314 (987)
||+.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998854 8999999999998887899999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=363.69 Aligned_cols=214 Identities=29% Similarity=0.470 Sum_probs=180.0
Q ss_pred cEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---H
Q 001980 99 NIEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW---L 174 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~ 174 (987)
.++++|++|+|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997432 146899999999999999999999999999999999999999999999999998876543 3
Q ss_pred h-cceEEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHH
Q 001980 175 R-DQIGLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250 (987)
Q Consensus 175 ~-~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialA 250 (987)
+ +.++|++|++.+|+. |++||+.++.. .....+..+ .+.+.++.+ |+.....+...+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINS-----RALEMLAAV--GLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHH
Confidence 3 579999999998876 99999987421 111111111 122334444 666667778889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCccccCCEEEEEeCCEEEEecC
Q 001980 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT 319 (987)
Q Consensus 251 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 319 (987)
|||+.+|+++||||||++||+.+++.+.+.|.++. +|+|+|++||+++.+..+|++++|++|++++.|+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999874 4899999999999998889999999999998775
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=366.83 Aligned_cols=225 Identities=31% Similarity=0.484 Sum_probs=192.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCCC--CH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRRL--NL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~l 816 (987)
.+.+++.+++|.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... ..
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 3889999999953 3699999999999999999999999999999999999986 799999999998643 44
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC-----CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE-----GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~-----~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 891 (987)
..+|++++|+||++.+|..|++|||.++.. ...++++.++++.+++.+.+... ..+...+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK-------LKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhh-------hhCCcccCCHHHHHH
Confidence 567889999999999999999999986531 11235677888888876554322 234566899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEe--------CCEEEEe
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQ--------DGRIVEQ 962 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~--------~G~ive~ 962 (987)
++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999998778899999999998865 89999996 8999999
Q ss_pred cChhHHhcCCCchHHH
Q 001980 963 GSHSELVSRPDGAYSR 978 (987)
Q Consensus 963 Gt~~eLl~~~~g~f~~ 978 (987)
|+++++++++...+.+
T Consensus 238 g~~~~~~~~~~~~~~~ 253 (261)
T PRK14263 238 GPTAQIFQNPREQLTS 253 (261)
T ss_pred CCHHHHHhCCCcHHHH
Confidence 9999998765434443
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-42 Score=365.62 Aligned_cols=216 Identities=29% Similarity=0.447 Sum_probs=183.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-Hhcce
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQI 178 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~i 178 (987)
++++|++++|++ ..+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 478999999974 34899999999999999999999999999999999999999999999999988776544 35679
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+|++|++.+|+. |++||+.++.+. ....+.. ..+.+.++.+ |+.........+||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999887 999999875321 1111111 1123445544 66666778888999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998875 48999999999987765 89999999999999999888754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=368.65 Aligned_cols=223 Identities=28% Similarity=0.505 Sum_probs=190.6
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-----CceEEECCccCCC--CC
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT-----AGKVMIDGKDIRR--LN 815 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--i~ 815 (987)
+.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999953 25899999999999999999999999999999999999985 8999999999853 45
Q ss_pred HHHHhcccEEEccccccccccHHHHhccCC------CCCC-HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 816 LKSLRLKIGLVQQEPALFAASIFDNIAYGK------EGAT-EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 816 l~~lR~~i~~VpQdp~lF~gTIreNL~~~~------~~~s-d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
...+|+.++|+||++.+|..|++||+.++. +... ++.+.++++..++.+++..+ ....+..|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK-------IHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHH
Confidence 567889999999999999999999997542 1111 23466777888876655422 234456799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeC-----CEEE
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQD-----GRIV 960 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~-----G~iv 960 (987)
|||++|||||+++|++|||||||++||+++...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999999853 48999999999999865 799999999 9999
Q ss_pred EecChhHHhcCCCch
Q 001980 961 EQGSHSELVSRPDGA 975 (987)
Q Consensus 961 e~Gt~~eLl~~~~g~ 975 (987)
+.|+++++..++...
T Consensus 236 ~~~~~~~~~~~~~~~ 250 (261)
T PRK14258 236 EFGLTKKIFNSPHDS 250 (261)
T ss_pred EeCCHHHHHhCCCCH
Confidence 999999998765543
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=362.75 Aligned_cols=212 Identities=37% Similarity=0.548 Sum_probs=184.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 578999999963 359999999999999999999999999999999999999999999999999987653 478899
Q ss_pred EEccccccccc-cHHHHhccCCC--CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKE--GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~--~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||+|.+|.+ |+++|+.+... .. .++++.++++..++.++.... ..+||+||+||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-----------PNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999975 99999976432 11 134556677777775554432 34799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCC
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRP 972 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~ 972 (987)
|+++|+++||||||++||+++...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.+
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~ 222 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHP 222 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcCC
Confidence 9999999999999999999999999999998654 7999999999999866 8999999999999999999998653
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=368.65 Aligned_cols=219 Identities=33% Similarity=0.524 Sum_probs=185.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~l 816 (987)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999963 3599999999999999999999999999999999999974 69999999999853 455
Q ss_pred HHHhcccEEEcccccccc-ccHHHHhccCCC---CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 817 KSLRLKIGLVQQEPALFA-ASIFDNIAYGKE---GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~-gTIreNL~~~~~---~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
..+|+.++|+||++.+|. .|+++|+.++.. ..+ ++.+.++++..++.+.+.. .......+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD-------RLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHH
Confidence 678899999999999987 599999975421 111 2345667777777543321 1233445799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEe------CCEEEE
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQ------DGRIVE 961 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~-~~D~Iivl~------~G~ive 961 (987)
|||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 9999999999999999999999999999999999999998877789999999999986 489999997 899999
Q ss_pred ecChhHHhcCC
Q 001980 962 QGSHSELVSRP 972 (987)
Q Consensus 962 ~Gt~~eLl~~~ 972 (987)
.|++++++..+
T Consensus 234 ~~~~~~~~~~~ 244 (258)
T PRK14241 234 IDDTEKIFSNP 244 (258)
T ss_pred cCCHHHHHhCc
Confidence 99999998654
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=369.20 Aligned_cols=218 Identities=29% Similarity=0.446 Sum_probs=181.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CCH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT--LQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~--~~~ 171 (987)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5999999999974 3489999999999999999999999999999999999997 48999999998853 234
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCCC---CH----HHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPEA---TM----AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
..++++|+|++|++.+|+.|++|||.++.... .. +++.++++..++.+ ++.......+.+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWN-------EVKDKLNTNALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCch-------hhHHHHhCCcccCCHHHH
Confidence 56778899999999999889999998863211 11 12222222222211 112234556789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 899999999999999999988
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
.++
T Consensus 237 ~~~ 239 (254)
T PRK14273 237 FFN 239 (254)
T ss_pred HhC
Confidence 653
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=365.89 Aligned_cols=221 Identities=34% Similarity=0.575 Sum_probs=188.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCC-CCCHH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIR-RLNLK 817 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~-~i~l~ 817 (987)
.++++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999963 3599999999999999999999999999999999999986 5999999999986 45667
Q ss_pred HHhcccEEEccccccccccHHHHhccCCC--CC-C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 818 SLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 818 ~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~-s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
.+|+.++|+||++.+|..|+++|+.++.. .. . ++++.++++.+++.+.+. .........|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 88999999999999999999999986521 11 1 234455666777654432 1223344579999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
|++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777999999999999876 8999999999999999999987
Q ss_pred cCCCc
Q 001980 970 SRPDG 974 (987)
Q Consensus 970 ~~~~g 974 (987)
.++..
T Consensus 233 ~~~~~ 237 (249)
T PRK14253 233 SNPKD 237 (249)
T ss_pred cCCCC
Confidence 65443
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=367.97 Aligned_cols=225 Identities=33% Similarity=0.561 Sum_probs=187.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-----CceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT-----AGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~-----~G~I~idG~di~~--i~l 816 (987)
-++++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4789999999963 36999999999999999999999999999999999999874 8999999999875 345
Q ss_pred HHHhcccEEEcccccccc-ccHHHHhccCCC--CC-CHHHH----HHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 817 KSLRLKIGLVQQEPALFA-ASIFDNIAYGKE--GA-TEAEV----VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~-gTIreNL~~~~~--~~-sd~ei----~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
..+|+.++|+||++.+|. .|+++|+.++.. .. .+++. .+.++..++++.+ ++.++++ ..+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKTP----ATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcCC----cccCCHHH
Confidence 577899999999999988 599999975421 11 23332 2334444444332 2334444 45799999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhH
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~e 967 (987)
|||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999999886 89999999999999999999
Q ss_pred HhcCCCchHHH
Q 001980 968 LVSRPDGAYSR 978 (987)
Q Consensus 968 Ll~~~~g~f~~ 978 (987)
++.++...|.+
T Consensus 234 ~~~~~~~~~~~ 244 (252)
T PRK14272 234 LFTNPRDERTE 244 (252)
T ss_pred HHhCcCcHHHH
Confidence 98776555543
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=361.46 Aligned_cols=213 Identities=27% Similarity=0.443 Sum_probs=176.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 478999999974 3589999999999999999999999999999999999999999999999988653 345677899
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 180 LVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|++|++.+++. |++||+.++... ....+..+ .+.+.++.+ |+.........+||||||||++||||++.+
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~la~al~~~ 149 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRE-----RIDELLDFV--GLLEAADRLVKTYSGGMRRRLEIARSLVHR 149 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999998876 999999874211 11111111 112333433 444445566679999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
|+++||||||++||+.+++.+.+.|.++. + ++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 150 PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999875 3 7899999999999875 899999999999999887654
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-42 Score=369.39 Aligned_cols=220 Identities=32% Similarity=0.520 Sum_probs=183.6
Q ss_pred CccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--C
Q 001980 97 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--L 169 (987)
Q Consensus 97 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--~ 169 (987)
.+.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 346999999999974 358999999999999999999999999999999999986 589999999999853 3
Q ss_pred CHHHHhcceEEEcCCCCCchhcHHHHHhcCCCC---CCHH----HHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChH
Q 001980 170 QLRWLRDQIGLVNQEPALFATTILENILYGKPE---ATMA----EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG 242 (987)
Q Consensus 170 ~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgG 242 (987)
+...++++|+|++|++.+|+.|++||+.++... .+.+ ++.++++..++ ..++....++...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAAL-------WNEVKDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCC-------ChhhHHHHhcCCCCCCHH
Confidence 455678899999999999989999999875321 1222 12222222221 112234566778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChH
Q 001980 243 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE 321 (987)
Q Consensus 243 qkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 321 (987)
||||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.+
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988768899999999998865 8999999999999999998
Q ss_pred HHHHh
Q 001980 322 ELIAK 326 (987)
Q Consensus 322 ~l~~~ 326 (987)
++...
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 87653
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=361.10 Aligned_cols=198 Identities=31% Similarity=0.508 Sum_probs=170.6
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEE
Q 001980 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 825 (987)
Q Consensus 746 ~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~ 825 (987)
+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999963 35999999999999999999999999999999999999999999999998874 46889999
Q ss_pred Ecccccc---ccccHHHHhccCCCC----------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 826 VQQEPAL---FAASIFDNIAYGKEG----------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 826 VpQdp~l---F~gTIreNL~~~~~~----------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
+||++.+ |..|++||+.++... ..++++.++++..++.++.... ..+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----------IGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHH
Confidence 9999986 668999999865321 1234567788888876654432 246999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~G 963 (987)
+|||||+++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999999875 67899999999999866 7999999986 56654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=368.49 Aligned_cols=229 Identities=26% Similarity=0.445 Sum_probs=190.4
Q ss_pred cEEEEeEEEECCCCC------CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH
Q 001980 744 EIELRHVDFAYPSRP------DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK 817 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~------~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~ 817 (987)
.|+++||+++|+... ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 489999999995311 23699999999999999999999999999999999999999999999999999766666
Q ss_pred HHhcccEEEccccc--ccc-ccHHHHhccCC---CC----CCHHHHHHHHHHcCch-hhHhhCCCcCCCccCCCCCCCCh
Q 001980 818 SLRLKIGLVQQEPA--LFA-ASIFDNIAYGK---EG----ATEAEVVEAARAANVH-GFVSALPNAYKTPVGERGVQLSG 886 (987)
Q Consensus 818 ~lR~~i~~VpQdp~--lF~-gTIreNL~~~~---~~----~sd~ei~~al~~a~l~-~~i~~lp~gldt~vge~G~~LSg 886 (987)
..|++++|+||+|. ++. -|+.+|+.++. .. ..++++.++++.+++. +... .. ..+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~----~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS-------YY----PHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh-------cC----chhcCH
Confidence 66788999999985 443 38888886421 11 1234567788888874 3322 22 246999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~G 963 (987)
|||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999875 37899999999999986 8999999999999999
Q ss_pred ChhHHhcCCC-chHHHHHHhh
Q 001980 964 SHSELVSRPD-GAYSRLLQLQ 983 (987)
Q Consensus 964 t~~eLl~~~~-g~f~~l~~~q 983 (987)
+++++.+.+. ..+++++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGH 253 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhc
Confidence 9999987643 4466677543
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=365.76 Aligned_cols=213 Identities=27% Similarity=0.459 Sum_probs=186.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++...++++++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999963 35999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEcccccc-ccccHHHHhccCCCCC------CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPAL-FAASIFDNIAYGKEGA------TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~l-F~gTIreNL~~~~~~~------sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||++.+ +..|++||+.++.... .++.+.++++..++.++... ....||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGR-----------DYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHH
Confidence 99999987 6789999998653211 13456677777777654332 234799999999999999
Q ss_pred Hc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHH
Q 001980 898 VL------KNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 898 ll------r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eL 968 (987)
|+ ++|++|||||||++||+.+...+.+.|++.. +++|||++||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999999875 4789999999999886 5899999999999999999998
Q ss_pred hcC
Q 001980 969 VSR 971 (987)
Q Consensus 969 l~~ 971 (987)
...
T Consensus 229 ~~~ 231 (258)
T PRK13548 229 LTP 231 (258)
T ss_pred hCh
Confidence 753
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=370.41 Aligned_cols=214 Identities=34% Similarity=0.600 Sum_probs=183.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC--CCHHHHhcc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR--LNLKSLRLK 822 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~--i~l~~lR~~ 822 (987)
|+++||+++|++ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999963 2359999999999999999999999999999999999999999999999999853 334568899
Q ss_pred cEEEcccc--ccccccHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 823 IGLVQQEP--ALFAASIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 823 i~~VpQdp--~lF~gTIreNL~~~~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
|+|+||+| .+|..|++||+.++.. ..+. +.+.++++..++.++.. .. ...||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-------~~----~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-------KP----PHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-------CC----hhhCCHHHHHHHHH
Confidence 99999998 4788999999976421 1222 34566777777654432 22 34699999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||||+++|++|||||||++||+.+...+.+.|+++. +++|||+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999875 47899999999999874 899999999999999999998764
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=359.33 Aligned_cols=199 Identities=32% Similarity=0.518 Sum_probs=167.8
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 001980 101 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180 (987)
Q Consensus 101 ~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 180 (987)
+++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 367999999741 358999999999999999999999999999999999999999999999998753 345678999
Q ss_pred EcCCC--CCchhcHHHHHhcCCCCCC--HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 181 VNQEP--ALFATTILENILYGKPEAT--MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 181 v~Q~~--~l~~~tv~eni~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
++|+| .+++.|++||+.++.+... .+++.++ ++.+ |+.........+||||||||++|||||+.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETV---------LKDL--DLYALKERHPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHH---------HHHc--CCchhcCCCchhCCHHHHHHHHHHHHHHhC
Confidence 99998 4567899999988643221 1223333 3333 444445566679999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEE
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVV 315 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~ 315 (987)
|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999884 58999999999999875 8999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=372.39 Aligned_cols=219 Identities=27% Similarity=0.491 Sum_probs=184.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC--CCCHHHHhc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK--TLQLRWLRD 176 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~~~ 176 (987)
.|+++|++|+|++ ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. ..+...+++
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 235899999999999999999999999999999999999999999999999984 234556788
Q ss_pred ceEEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 177 QIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 177 ~i~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
.++|++|+| .+++.|++||+.++... ...++..+. +.+.++.+ |+.......+.+||||||||++||||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHC--CChhhhhCCcccCCHHHHHHHHHHHH
Confidence 999999998 56788999999875321 122221111 12223333 55555677788999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHHHh
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|+.+|++|||||||++||+.++..+.+.|.++.+ |+|+|++||+++.+. .|||+++|++|++++.|+++++.+.
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999998853 899999999999987 5999999999999999999988654
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=361.33 Aligned_cols=211 Identities=27% Similarity=0.442 Sum_probs=176.8
Q ss_pred EEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 100 IEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 100 i~~~~~~~~y~~~~~-~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
++++|++++|++... .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ...++++++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999975311 258999999999999999999999999999999999999999999999999875 345667889
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+|++|++.+|+. |++||+.+.... ....+..+ .+.+.++.+ |++......+.+||||||||++|||||+.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA-----RLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 999999999886 999999764221 11111111 112334444 66666677888999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
+|+++||||||++||+.+++.+.+.|.++. +++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999885 48999999999998765 8999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=369.28 Aligned_cols=221 Identities=27% Similarity=0.443 Sum_probs=185.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|++....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334589999999999999999999999999999999999999999999999999877777778899
Q ss_pred EEEcCCCC--CchhcHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 179 GLVNQEPA--LFATTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 179 ~~v~Q~~~--l~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+|++|+|. ++..|+.|||.++.. ....++..+.+ .+.++.+ |+..........||||||||++|||||+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lAraL~ 156 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRV-----DEALLAV--NMLDFKTREPARLSGGQKQRVAVAGIIA 156 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHH-----HHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999984 557799999987532 11222221111 1122222 4433445567799999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|+++||||||++||+.+++.+.+.|.++.+ |.|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 157 LRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999998853 8999999999999888999999999999999999988754
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=365.27 Aligned_cols=227 Identities=30% Similarity=0.496 Sum_probs=191.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC------CccCCCCCHH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID------GKDIRRLNLK 817 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~id------G~di~~i~l~ 817 (987)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++ |.++.+++..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 5999999999963 358999999999999999999999999999999999999998666655 5777777888
Q ss_pred HHhcccEEEccccccccc-cHHHHhccCCC--CC-CHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 818 SLRLKIGLVQQEPALFAA-SIFDNIAYGKE--GA-TEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 818 ~lR~~i~~VpQdp~lF~g-TIreNL~~~~~--~~-sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
.+|++++|+||+|.+|.+ |+++|+.++.. .. .++ .+.++++..++.+++.. .....+..||+|||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD-------RLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchh-------hhcCCcccCCHHHH
Confidence 889999999999999975 99999986421 11 222 34566677777544311 12334567999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++||||++++|++|||||||++||..+...+.+.|++..+++|+|+|||+++.+. .||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999995 5899999999999999999999
Q ss_pred hcCCCchHHHHH
Q 001980 969 VSRPDGAYSRLL 980 (987)
Q Consensus 969 l~~~~g~f~~l~ 980 (987)
.+.+...|.+.+
T Consensus 240 ~~~~~~~~~~~~ 251 (257)
T PRK14246 240 FTSPKNELTEKY 251 (257)
T ss_pred HhCCCcHHHHHH
Confidence 887665566554
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=357.57 Aligned_cols=210 Identities=32% Similarity=0.477 Sum_probs=187.0
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH----HHHhc
Q 001980 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL----KSLRL 821 (987)
Q Consensus 746 ~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l----~~lR~ 821 (987)
.+.|++|+|+.+ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 567899999743 469999999999999999999999999999999999999999999999999876542 34577
Q ss_pred ccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 001980 822 KIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901 (987)
Q Consensus 822 ~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~ 901 (987)
.++|+||+|.+|+.|+++|+.++.+ ..+++..++++..++.+++..+|.|+++.++....+||||||||++||||++++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999999999999987643 456677888899999998998999999999888899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHH--HHHHHc-CCCeEEEEecCchhhhccCEEEEEeCCE
Q 001980 902 PAILLLDEATSALDAESECVLQE--ALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGR 958 (987)
Q Consensus 902 p~ILlLDEaTS~LD~~te~~I~~--~l~~~~-~~~TvI~IaHRl~ti~~~D~Iivl~~G~ 958 (987)
|++|||||||++||+.+...+.+ .++... .+.|+|++||+++.+..||++++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999998887 444443 3689999999999999999999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=375.99 Aligned_cols=213 Identities=29% Similarity=0.480 Sum_probs=181.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++... ...+|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999998764 35678999
Q ss_pred EEEcccccccc-ccHHHHhccCC--CCCCHHH----HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGK--EGATEAE----VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~--~~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+|+||++.+|. .|+++|+.+.. ...+..+ +.++++..++. +.+++.+ ..||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-------~~~~~~~----~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-------SKADVRV----ALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-------hHhcCch----hhCCHHHHHHHHHHH
Confidence 99999999885 69999997421 1123332 33444444443 3344444 469999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||+++|++|||||||++||+.+...+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999999875 57899999999999865 899999999999999999999754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=359.42 Aligned_cols=207 Identities=26% Similarity=0.444 Sum_probs=172.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++|+|++ .++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..++++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 478999999964 35899999999999 99999999999999999999999999999999999887665 56778899
Q ss_pred EEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 180 LVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|++|++.+|.. |++||+.+... ....++..+. +.+.++.+ |+.........+||||||||++|||||+++
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 148 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKAR-----VDEVLELV--NLGDRAKKKIGSLSGGMRRRVGIAQALVGD 148 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHH-----HHHHHHHC--CCHHHHhCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999876 99999986421 1111111111 11222322 333334456678999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 149 PSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999998767999999999999865 8999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=379.16 Aligned_cols=218 Identities=28% Similarity=0.470 Sum_probs=182.7
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..|+++|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...++.
T Consensus 40 ~~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ 115 (340)
T PRK13536 40 VAIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARAR 115 (340)
T ss_pred eeEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhcc
Confidence 35999999999974 34999999999999999999999999999999999999999999999999987654 456788
Q ss_pred eEEEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 178 IGLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 178 i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
|||+||++.++. .|++||+.+.... ....+..+.+ .+.++.+ |+.........+||||||||++|||||+
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~L~~~~~~~~~~LS~G~kqrv~lA~aL~ 188 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADARVSDLSGGMKRRLTLARALI 188 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchhhCCChhhCCHHHHHHHHHHHHHh
Confidence 999999999875 4999999853211 1112222111 1223322 4444456666789999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|+++||||||++||+.+++.+++.|+++. .|+|||++||+++.+.. ||+|++|++|+++..|+.+++.+.
T Consensus 189 ~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 189 NDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999885 48999999999999976 899999999999999999998653
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=367.77 Aligned_cols=214 Identities=29% Similarity=0.461 Sum_probs=188.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+++++
T Consensus 7 ~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 7 RLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred EEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 6999999999963 3599999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEcccccccc-ccHHHHhccCC-CC---------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGK-EG---------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~-~~---------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
+|+||++.+|. .|+++|+.++. +. ..++.++++++..++.++..+ ....||||||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv 152 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----------SVDTLSGGQRQRA 152 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCChHHHHHH
Confidence 99999998875 69999997642 10 123456778888887655332 3357999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
+||||++++|++|||||||++||+.+...+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 153 WIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999998765 8999999999999999999987
Q ss_pred cC
Q 001980 970 SR 971 (987)
Q Consensus 970 ~~ 971 (987)
..
T Consensus 233 ~~ 234 (265)
T PRK10253 233 TA 234 (265)
T ss_pred hH
Confidence 53
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=360.52 Aligned_cols=209 Identities=30% Similarity=0.514 Sum_probs=174.8
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---Hh
Q 001980 100 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW---LR 175 (987)
Q Consensus 100 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~~ 175 (987)
++++|++++|++.. ..++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+... ++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999997421 245899999999999999999999999999999999999999999999999998776543 33
Q ss_pred -cceEEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 176 -DQIGLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 176 -~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
+.++|++|++.+++. |++||+.++.. .....+..+ .+.+.++.+ |++......+.+||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKE-----RAYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 679999999998864 99999987421 111111111 112344444 6666667778899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCccccCCEEEEEeCCEEE
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVV 315 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~ 315 (987)
||+.+|++|||||||++||+.+++.+.+.|.++. .++|+|++||+++.+..+|+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999885 379999999999998889999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=360.87 Aligned_cols=208 Identities=27% Similarity=0.444 Sum_probs=179.0
Q ss_pred cEEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH---H
Q 001980 744 EIELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---L 819 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~---l 819 (987)
.|+++|++++|++... .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999964211 25999999999999999999999999999999999999999999999999998887653 2
Q ss_pred -hcccEEEccccccccc-cHHHHhccCC--CCC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 001980 820 -RLKIGLVQQEPALFAA-SIFDNIAYGK--EGA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 820 -R~~i~~VpQdp~lF~g-TIreNL~~~~--~~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 891 (987)
+++++|+||++.+|.. |++||+.++. ... ..+++.++++..++.++....| ..||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 3689999999999874 9999997531 111 2345677788888766554433 4699999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEecCchhhhccCEEEEEeCCEEEEe
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-R-GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 962 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~-~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~ 962 (987)
++|||||+++|++|||||||++||+.+...+.+.|++.. + ++|||+|||+++.+..||+|++|++|+++|.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999874 2 7899999999999988999999999999874
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=344.93 Aligned_cols=172 Identities=42% Similarity=0.712 Sum_probs=162.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++. ..++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+++.+.+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999643 235999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 001980 825 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 904 (987)
Q Consensus 825 ~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~I 904 (987)
|++|+|.+|.+|+++|+ ||||||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEEeCCEE
Q 001980 905 LLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGRI 959 (987)
Q Consensus 905 LlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~Iivl~~G~i 959 (987)
|||||||++||+.+...+.+.|++.. +++|+|++||+++.+..||+|++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999999875 47899999999999988999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=365.58 Aligned_cols=223 Identities=30% Similarity=0.494 Sum_probs=187.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC--C---CCceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--P---TAGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~--p---~~G~I~idG~di~~--i~l 816 (987)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999963 359999999999999999999999999999999999975 4 58999999999864 345
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCC--CC-C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~-s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
..+|++++|+||++.+|..|+++|+.++.. .. . ++++.++++.+++.+.+. ........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHH
Confidence 567889999999999999999999975421 11 1 234556667776654332 122334457999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++.+.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998767899999999999865 899999999999999999999
Q ss_pred hcCCCchH
Q 001980 969 VSRPDGAY 976 (987)
Q Consensus 969 l~~~~g~f 976 (987)
..++...+
T Consensus 235 ~~~~~~~~ 242 (252)
T PRK14255 235 FLNPKEKE 242 (252)
T ss_pred hcCCCChH
Confidence 87655444
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=376.95 Aligned_cols=228 Identities=24% Similarity=0.371 Sum_probs=189.5
Q ss_pred cEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC----CCCceEEECCccCCCCCHHH
Q 001980 744 EIELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD----PTAGKVMIDGKDIRRLNLKS 818 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~----p~~G~I~idG~di~~i~l~~ 818 (987)
-|+++|++++|+.+. ...+|+||||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||+++.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 379999999996421 2369999999999999999999999999999999999986 58999999999999888766
Q ss_pred Hh----cccEEEcccccc--c-cccHHHHhccCC------C----C--CCHHHHHHHHHHcCchhhHhhCCCcCCCccCC
Q 001980 819 LR----LKIGLVQQEPAL--F-AASIFDNIAYGK------E----G--ATEAEVVEAARAANVHGFVSALPNAYKTPVGE 879 (987)
Q Consensus 819 lR----~~i~~VpQdp~l--F-~gTIreNL~~~~------~----~--~sd~ei~~al~~a~l~~~i~~lp~gldt~vge 879 (987)
++ ++|+||||+|.. + ..||.+|+.... . . ..++++.++++.+++.+.-.. + ..
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~----~----~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA----M----RS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH----H----hC
Confidence 53 479999999963 2 358888885310 0 0 013456788888888643211 1 12
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeC
Q 001980 880 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQD 956 (987)
Q Consensus 880 ~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~ 956 (987)
....||||||||++|||||+.+|+||||||||++||+.+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 2357999999999999999999999999999999999999999999998763 7899999999999965 899999999
Q ss_pred CEEEEecChhHHhcCCCchHHHH
Q 001980 957 GRIVEQGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 957 G~ive~Gt~~eLl~~~~g~f~~l 979 (987)
|+|+|.|+++++++++...|.+.
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~~ 257 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQA 257 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHHH
Confidence 99999999999998776677653
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=376.38 Aligned_cols=216 Identities=28% Similarity=0.472 Sum_probs=181.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ....++++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999974 3489999999999999999999999999999999999999999999999988653 34567889
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+|++|++.+++. |++||+.+... ..+..+..+.+ .+.++.+ |+.........+||||||||++|||||+.
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHC--CChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 999999998864 99999975211 11222222111 1223333 45445566677899999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
+|+++||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+++..|+++++..
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999885 48999999999999875 89999999999999999998864
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=360.88 Aligned_cols=211 Identities=33% Similarity=0.598 Sum_probs=184.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 478999999952 27999999999999999999999999999999999999999999999999987654 378999
Q ss_pred EEcccccccc-ccHHHHhccCCCC--C----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFA-ASIFDNIAYGKEG--A----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~-gTIreNL~~~~~~--~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
++||++.+|. .|++||+.++... . .++++.++++..++.+++.+.+ ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHH
Confidence 9999999885 7999999864321 1 2345667788888776655433 4699999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCC
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRP 972 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~ 972 (987)
++++|++|+|||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.+
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 9999999999999999999999999999998653 8999999999999875 8999999999999999999998764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=353.85 Aligned_cols=200 Identities=35% Similarity=0.565 Sum_probs=178.5
Q ss_pred EEEEeEEEECCCCCC--ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 100 IEFKNVTFSYPSRPD--VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 100 i~~~~~~~~y~~~~~--~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
++++|++++|++..+ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 478999999975321 3599999999999999999999999999999999999999999999998 6
Q ss_pred eEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 178 IGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 178 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
|+|++|+|.+|+.|++||+.++... ..++..++++.+++.+++..+|.|+++.+++.+.+||||||||++|||||+.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPF-DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCc-CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999986432 344566677777788889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHH-HHhhh-CCCeEEEEcCCCCccccCCEEEEEeCCE
Q 001980 258 KILLLDEATSALDAGSESIVQEA-LDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQ 313 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~-l~~~~-~~~tvi~vtH~~~~~~~~d~i~~l~~G~ 313 (987)
+++||||||++||+.+.+.+.+. +..+. +++|+|++||+++.+..+|++++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999999999999999888874 55553 4799999999999988899999999984
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=366.39 Aligned_cols=212 Identities=27% Similarity=0.440 Sum_probs=185.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999963 36999999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEccccc-cccccHHHHhccCCCC----------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 825 LVQQEPA-LFAASIFDNIAYGKEG----------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 825 ~VpQdp~-lF~gTIreNL~~~~~~----------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
|+||++. .+..|+++|+.++... ..++++.++++..++.+.... ....||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHH
Confidence 9999985 4568999999765210 112356777777777554332 33579999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
||||++.+|+++||||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999999999999875 4789999999999995 589999999999999999999864
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=366.32 Aligned_cols=214 Identities=23% Similarity=0.436 Sum_probs=181.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH-hcc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-RLK 822 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l-R~~ 822 (987)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999953 369999999999999999999999999999999999999999999999999998876654 456
Q ss_pred cEEEccccccccc-cHHHHhccCCCCC-----------------C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCC
Q 001980 823 IGLVQQEPALFAA-SIFDNIAYGKEGA-----------------T----EAEVVEAARAANVHGFVSALPNAYKTPVGER 880 (987)
Q Consensus 823 i~~VpQdp~lF~g-TIreNL~~~~~~~-----------------s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~ 880 (987)
++|+||+|.+|.+ |+++|+.++.... . .+.+.+.++..++ +......
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGL-----------LEHANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCCh-----------hhhhhCC
Confidence 9999999999985 9999998642100 0 0123333344433 3333445
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCC
Q 001980 881 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDG 957 (987)
Q Consensus 881 G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G 957 (987)
..+||||||||++|||||+++|++|||||||++||+.+...+.+.|.+..+ ++|||++||+++.+.+ ||+|++|++|
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 568999999999999999999999999999999999999999999998753 7899999999999866 8999999999
Q ss_pred EEEEecChhHHhcC
Q 001980 958 RIVEQGSHSELVSR 971 (987)
Q Consensus 958 ~ive~Gt~~eLl~~ 971 (987)
++++.|+++++..+
T Consensus 231 ~i~~~~~~~~~~~~ 244 (255)
T PRK11300 231 TPLANGTPEEIRNN 244 (255)
T ss_pred eEEecCCHHHHhhC
Confidence 99999999998754
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-42 Score=357.32 Aligned_cols=203 Identities=26% Similarity=0.429 Sum_probs=172.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 478999999963 3599999999999999999999999999999999999999999999999987654 45567899
Q ss_pred EEcCCCCCch-hcHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 180 LVNQEPALFA-TTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 180 ~v~Q~~~l~~-~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|++|++.+++ .|++||+.++.. ....+++.++++.. |+.......+.+||||||||++|||||+.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVV-----------GLKDSAKKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHc-----------CCHHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998885 599999987532 11223333333333 444445556778999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
|+++||||||++||+.+++.+.+.|.++. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999875 48999999999999865 8999999999998764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=356.28 Aligned_cols=201 Identities=31% Similarity=0.541 Sum_probs=175.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++. . .|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 5799999999532 2 39999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEccccccccc-cHHHHhccCCC-C-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKE-G-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~-~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||++.+|.+ |++||+.++.. . ..++++.++++..++.++....| ..||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 99999986532 1 13456788888888876655443 3699999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~G 963 (987)
++++|++|||||||++||+++...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999875 37899999999999866 8999999999998864
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=374.18 Aligned_cols=212 Identities=22% Similarity=0.435 Sum_probs=184.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
++++|++++|++ ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.. ....+|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999953 469999999999999999999999999999999999999999999999999977 3457889999
Q ss_pred EEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||+|.+|.+ |++|||.+... ..+ .+++.++++..++.+.. .....+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-----------HKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCchhhCCHHHHHHHHHHHH
Confidence 99999999876 99999975321 112 23455666666665443 23345799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|+++|++|||||||++||+.+.+.+++.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999998778999999999998876 899999999999999999999754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=368.94 Aligned_cols=218 Identities=32% Similarity=0.496 Sum_probs=181.8
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CC
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT--LQ 170 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~--~~ 170 (987)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 18 ~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 18 IKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred ceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 46999999999974 3589999999999999999999999999999999999975 89999999999864 34
Q ss_pred HHHHhcceEEEcCCCCCchhcHHHHHhcCCCC--C--CHHHHHHHHHHHhHHHHHHhCCCCCc----ccccCCCCCCChH
Q 001980 171 LRWLRDQIGLVNQEPALFATTILENILYGKPE--A--TMAEVEAAASAANAHSFITLLPNGYS----TQVGERGVQLSGG 242 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~g~~----t~~~~~g~~LSgG 242 (987)
...+++.++|++|++.+|+.|+.||+.++... . ...+..+ .+.+.++.+ |+. +..+..+.+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDE-----IVETSLRKA--GLWEEVKDRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHH-----HHHHHHHHc--CCchhhhHHhhCCcccCCHH
Confidence 55678889999999999988999999875310 0 1111111 111222222 332 2456678899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChH
Q 001980 243 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE 321 (987)
Q Consensus 243 qkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 321 (987)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988767899999999999865 8999999999999999998
Q ss_pred HHHH
Q 001980 322 ELIA 325 (987)
Q Consensus 322 ~l~~ 325 (987)
++..
T Consensus 248 ~~~~ 251 (267)
T PRK14235 248 KMFT 251 (267)
T ss_pred HHHh
Confidence 8764
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=359.57 Aligned_cols=209 Identities=33% Similarity=0.532 Sum_probs=184.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++||+++|+. . ..|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+. .++.++
T Consensus 2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS 74 (232)
T ss_pred eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence 789999999953 2 249999999999999999999999999999999999999999999999887654 357899
Q ss_pred EEccccccccc-cHHHHhccCC-CC-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFAA-SIFDNIAYGK-EG-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~-~~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||++.+|.+ |+++|+.++. +. ..++++.++++..++.+++...| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 9999998642 11 12456788899998887766554 3699999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
++++|++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999998753 7899999999999865 899999999999999999999865
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=368.88 Aligned_cols=217 Identities=28% Similarity=0.522 Sum_probs=183.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC-HHHHhcce
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ-LRWLRDQI 178 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~~~~i 178 (987)
++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 6899999999632 34899999999999999999999999999999999999999999999999997765 35667789
Q ss_pred EEEcCCCC--CchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 179 GLVNQEPA--LFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 179 ~~v~Q~~~--l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+|++|+|. +++.|++||+.++... .+..+..+. +.+.++.+ |+.......+..||||||||++|||||+
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKR-----VDRALAEI--GLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999985 4567999999886321 122222111 12233444 5666667778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHH
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
.+|+++||||||++||+.++..+.+.|+++. +|+|+|++||+++.+..||+|++|++|++++.|+.+++..
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999875 4899999999999998899999999999999999988754
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=375.44 Aligned_cols=223 Identities=29% Similarity=0.410 Sum_probs=185.1
Q ss_pred ccEEEEeEEEECCCCC----------CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC
Q 001980 98 GNIEFKNVTFSYPSRP----------DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK 167 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~----------~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~ 167 (987)
..|+++|++++|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 3589999999996321 246899999999999999999999999999999999999999999999999998
Q ss_pred CCCHH---HHhcceEEEcCCC--CCch-hcHHHHHhcCC----CCCCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCC
Q 001980 168 TLQLR---WLRDQIGLVNQEP--ALFA-TTILENILYGK----PEATMAEVEAAASAANAHSFITLLPNGYS-TQVGERG 236 (987)
Q Consensus 168 ~~~~~---~~~~~i~~v~Q~~--~l~~-~tv~eni~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g 236 (987)
..+.. .+|++|+||+|+| .+++ .||.|||.++. +..+.++..+.. .+.++.+ |+. ......+
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~-----~~~l~~v--gl~~~~~~~~p 159 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRV-----KAMMLKV--GLLPNLINRYP 159 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHc--CCChHHhcCCc
Confidence 87654 3567899999998 4664 59999997532 112222222211 2233333 442 2456778
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCE
Q 001980 237 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQ 313 (987)
Q Consensus 237 ~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~ 313 (987)
.+|||||||||+|||||+.+|+++|+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ 239 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGH 239 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999998853 8999999999999976 89999999999
Q ss_pred EEEecChHHHHHhh
Q 001980 314 VVETGTHEELIAKA 327 (987)
Q Consensus 314 i~~~g~~~~l~~~~ 327 (987)
|++.|+.+++.++.
T Consensus 240 ive~g~~~~i~~~~ 253 (331)
T PRK15079 240 AVELGTYDEVYHNP 253 (331)
T ss_pred EEEEcCHHHHHcCC
Confidence 99999999988653
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=367.87 Aligned_cols=220 Identities=28% Similarity=0.518 Sum_probs=185.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999632 24589999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEcCCCC--CchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 179 GLVNQEPA--LFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 179 ~~v~Q~~~--l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+|++|+|. ++..|++||+.++... .+.++... .+.+.++.+ |+.........+||||||||++|||||+
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999984 4466999999875321 12222211 112334443 5555567777899999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|+++||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+..||++++|++|++++.|+.+++.+.
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999998753 5899999999999888999999999999999998887653
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=364.20 Aligned_cols=216 Identities=33% Similarity=0.551 Sum_probs=183.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC--CHHHHhcc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL--QLRWLRDQ 177 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~--~~~~~~~~ 177 (987)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... +...++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999973 3489999999999999999999999999999999999999999999999998764 33566778
Q ss_pred eEEEcCCCCCch-hcHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 178 IGLVNQEPALFA-TTILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 178 i~~v~Q~~~l~~-~tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
++|++|++.++. .|++||+.++.. .....+..+ .+.+.++.+ |++.........||||||||++|||||
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999998886 499999987531 111111111 123344444 666667778889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
+.+|+++||||||++||+.++..+.+.|.++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 99999999999999999999999999998875 48999999999999865 89999999999999999888754
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=371.38 Aligned_cols=216 Identities=34% Similarity=0.498 Sum_probs=178.5
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH----hc
Q 001980 101 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL----RD 176 (987)
Q Consensus 101 ~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----~~ 176 (987)
.++|++++|++ ..+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 46688888864 348999999999999999999999999999999999999999999999999887665432 35
Q ss_pred ceEEEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 177 QIGLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 177 ~i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
+++|++|++.+|+ .|++||+.++... .......+ .+.+.++.+ |+...+.....+||||||||++|||||
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREE-----RAAEALELV--GLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 7999999999985 5999999875321 11111111 112233333 555455666779999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+.+|+++||||||++||+.+++.+.+.|.++. .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999884 37999999999998765 899999999999999999988653
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=361.22 Aligned_cols=214 Identities=26% Similarity=0.452 Sum_probs=181.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH-Hhcc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS-LRLK 822 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~-lR~~ 822 (987)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|++
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3889999999963 36999999999999999999999999999999999999999999999999998877644 5789
Q ss_pred cEEEcccccccc-ccHHHHhccCCC---CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 823 IGLVQQEPALFA-ASIFDNIAYGKE---GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 823 i~~VpQdp~lF~-gTIreNL~~~~~---~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
++|+||++.+|. .|++||+.++.. ..+.+ .+.+.++..++ +.........||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHI-----------EHLRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCC-----------HHHhhcchhhCCHHHHHHHHH
Confidence 999999999887 499999986421 11222 23334444433 333334456799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|||++++|++|||||||++||+.+...+.+.+++.. +++|+|++||+++.+. .||+|++|++|++++.|++++++..
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 999999999999999999999999999999998865 4889999999998775 4899999999999999999999754
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=377.23 Aligned_cols=213 Identities=28% Similarity=0.481 Sum_probs=183.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|++ ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++...+ ...|++|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 4999999999963 35999999999999999999999999999999999999999999999999997654 5678999
Q ss_pred EEEccccccc-cccHHHHhccCCC--CCCHHH----HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALF-AASIFDNIAYGKE--GATEAE----VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF-~gTIreNL~~~~~--~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+|+||++.+| ..|++||+.+... ..+..+ +.++++..++ ++..++.++ +||||||||++|||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~~~~~~----~LS~G~kqrv~lA~ 185 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-------ESKADARVS----DLSGGMKRRLTLAR 185 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chhhCCChh----hCCHHHHHHHHHHH
Confidence 9999999886 5799999975321 122222 3344444444 334555554 69999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||+++|++|||||||++||+.+...+++.|+++. +++|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999999875 48999999999999865 899999999999999999999754
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=359.26 Aligned_cols=210 Identities=25% Similarity=0.456 Sum_probs=181.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||++.|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4899999999953 3599999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEccccccccccHHHHhccCC---CC-CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 824 GLVQQEPALFAASIFDNIAYGK---EG-ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 824 ~~VpQdp~lF~gTIreNL~~~~---~~-~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
+|+||++.+|..|++||+.++. .. ..++++.+.++..++.+. .......+||||||||++|||||+
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDT----------ILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChH----------HhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999997531 11 123345566666665321 123344579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEe-CCEEEEecChh
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQ-DGRIVEQGSHS 966 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~~D~Iivl~-~G~ive~Gt~~ 966 (987)
++|++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+..||+|++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999999875 3789999999999998899999995 66777888885
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=362.06 Aligned_cols=218 Identities=25% Similarity=0.410 Sum_probs=180.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-Hhcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 177 (987)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999974 35899999999999999999999999999999999999999999999999998877543 5678
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
++|++|++.+|+. |++||+.++.......+....+ .+.++.++ ++.........+||||||||++|||||+.+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999975 9999998864222222221111 11122221 112223446678999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999999875 48999999999997755 89999999999999999998864
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=382.13 Aligned_cols=221 Identities=35% Similarity=0.525 Sum_probs=183.9
Q ss_pred cEEEEeEEEECCCCCC---------------------ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 001980 99 NIEFKNVTFSYPSRPD---------------------VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 157 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~---------------------~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G 157 (987)
.|+++|+++.|+..+. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 3777888887764321 2379999999999999999999999999999999999999999
Q ss_pred EEEECCEeCCCCCHHHH----hcceEEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcc
Q 001980 158 HVLLDNVDIKTLQLRWL----RDQIGLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYST 230 (987)
Q Consensus 158 ~i~~~g~~~~~~~~~~~----~~~i~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t 230 (987)
+|.++|.++...+...+ +++++|++|++.+|+. |++||+.++... ...++..+ .+.+.++.+ |++.
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~-----~~~e~L~~~--gL~~ 156 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERRE-----KALDALRQV--GLEN 156 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCh
Confidence 99999999988776443 4579999999999975 999999986321 11111111 122334444 6666
Q ss_pred cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEE
Q 001980 231 QVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVA 307 (987)
Q Consensus 231 ~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~ 307 (987)
.......+||||||||++|||||+.+|++|||||||++||+.+++.+++.|.++. .++|+|++||+++++.. ||+|+
T Consensus 157 ~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~ 236 (400)
T PRK10070 157 YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIA 236 (400)
T ss_pred hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEE
Confidence 6677778999999999999999999999999999999999999999999999874 48999999999998765 89999
Q ss_pred EEeCCEEEEecChHHHHHh
Q 001980 308 VIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 308 ~l~~G~i~~~g~~~~l~~~ 326 (987)
+|++|++++.|+++++...
T Consensus 237 vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 237 IMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred EEECCEEEecCCHHHHHhC
Confidence 9999999999999998764
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=365.36 Aligned_cols=218 Identities=29% Similarity=0.436 Sum_probs=182.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCCCHHH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTLQLRW 173 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~ 173 (987)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 3899999999974 3489999999999999999999999999999999999974 7999999999998877777
Q ss_pred HhcceEEEcCCCCCc-hhcHHHHHhcCCCCC----CHHHHHHHHHHHhHHHHHHhCCCCC----cccccCCCCCCChHHH
Q 001980 174 LRDQIGLVNQEPALF-ATTILENILYGKPEA----TMAEVEAAASAANAHSFITLLPNGY----STQVGERGVQLSGGQK 244 (987)
Q Consensus 174 ~~~~i~~v~Q~~~l~-~~tv~eni~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~----~t~~~~~g~~LSgGqk 244 (987)
+++.|+|++|++.++ ..|++||+.++.... ...+..+ .+.+.++.+ |+ .......+.+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE-----RVRWALEKA--QLWDEVKDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHH-----HHHHHHHHc--CCCcchhhhhcCCcccCCHHHH
Confidence 888999999999766 569999998753210 1111111 112223332 32 2345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+++|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998864 899999999999999999988
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14247 233 FTN 235 (250)
T ss_pred HcC
Confidence 643
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=369.72 Aligned_cols=218 Identities=26% Similarity=0.445 Sum_probs=183.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHh
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WLR 175 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~ 175 (987)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999963 3589999999999999999999999999999999999999999999999998766543 346
Q ss_pred cceEEEcCCCCCchh-cHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 176 DQIGLVNQEPALFAT-TILENILYGKPE---ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
++++|++|++.+|+. |++||+.++... ....... ....+.++.+ |+.........+||||||||++|||
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLH-----STVMMKLEAV--GLRGAAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 789999999999976 999999864211 1111111 1112233443 5555566677899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
||+.+|+++||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998753 7999999999998876 899999999999999999998754
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=370.69 Aligned_cols=220 Identities=29% Similarity=0.516 Sum_probs=183.3
Q ss_pred EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----CHHH
Q 001980 100 IEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL----QLRW 173 (987)
Q Consensus 100 i~~~~~~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~----~~~~ 173 (987)
|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +...
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997321 13589999999999999999999999999999999999999999999999998643 2455
Q ss_pred HhcceEEEcCCC--CCchhcHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHHHHH
Q 001980 174 LRDQIGLVNQEP--ALFATTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIA 248 (987)
Q Consensus 174 ~~~~i~~v~Q~~--~l~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkqRia 248 (987)
.++.|+|++|+| .+|+.|++||+.++.. ....++..+ .+.+.++.+ |+. ........+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl~ 155 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKKV--GLSEDLISKSPFELSGGQMRRVA 155 (287)
T ss_pred HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhHhhCCcccCCHHHHHHHH
Confidence 677899999998 5777899999987532 112222211 122334444 665 3456778899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 249 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|||||+.+|++|||||||++||+.+++.+.+.|.++. .|.|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 156 laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13641 156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSD 235 (287)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999885 48999999999998865 899999999999999999887643
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=357.54 Aligned_cols=204 Identities=32% Similarity=0.499 Sum_probs=174.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH---Hhc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---LRL 821 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~---lR~ 821 (987)
|+++|++++|++ +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++.+++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999942 235999999999999999999999999999999999999999999999999998876543 688
Q ss_pred ccEEEcccccc-ccccHHHHhccCC--CCCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 822 KIGLVQQEPAL-FAASIFDNIAYGK--EGATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 822 ~i~~VpQdp~l-F~gTIreNL~~~~--~~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
.++|+||+|.+ +..|+++|+.++. ...+++ ++.++++..++.+...+ ....||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN-----------FPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CchhCCHHHHHHHHH
Confidence 99999999986 5679999998642 122332 34566777776654433 235799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEE
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVE 961 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive 961 (987)
|||++++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999999874 47899999999999976 79999999999864
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=379.33 Aligned_cols=213 Identities=30% Similarity=0.462 Sum_probs=187.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCC----CHHHHh
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL----NLKSLR 820 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~l~~lR 820 (987)
|++ |++++|.+ . .+ |+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++... .....|
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999953 2 23 99999999999999999999999999999999999999999999998653 244568
Q ss_pred cccEEEcccccccc-ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 821 LKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 821 ~~i~~VpQdp~lF~-gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
++++|+||++.+|. .|+++|+.++.....++++.++++..++.++....| .+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHH
Confidence 89999999999996 699999988755455667888888888876655443 479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCCc
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDG 974 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~g 974 (987)
++|++|||||||++||+.+.+.+++.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++..
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~ 222 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAM 222 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcch
Confidence 99999999999999999999999999998753 6899999999998865 899999999999999999999988653
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=364.14 Aligned_cols=220 Identities=31% Similarity=0.509 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCccCCC--CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRR--LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~l 816 (987)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 6999999999963 3599999999999999999999999999999999999864 58999999999864 344
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCCC-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKEG-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 891 (987)
..+|++++|+||++.+|..|+++|+.++... ..++++.++++.+++.+.+.. -++ .....||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~~----~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD---KLK----EKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH---Hhc----CCcccCCHHHHHH
Confidence 5678999999999999989999999864211 123455667777777654432 122 3445799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEe---------CCEEEE
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQ---------DGRIVE 961 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~---------~G~ive 961 (987)
++|||||+++|++|||||||++||+.+...+.+.|++..+++|||+|+|+++.+.. ||+|++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999998778999999999998865 89999997 899999
Q ss_pred ecChhHHhcCCC
Q 001980 962 QGSHSELVSRPD 973 (987)
Q Consensus 962 ~Gt~~eLl~~~~ 973 (987)
.|+++++...+.
T Consensus 250 ~g~~~~~~~~~~ 261 (274)
T PRK14265 250 FSPTEQMFGSPQ 261 (274)
T ss_pred eCCHHHHHhCCC
Confidence 999999987644
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=366.74 Aligned_cols=219 Identities=33% Similarity=0.478 Sum_probs=182.6
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CC
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--LQ 170 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 170 (987)
..|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 35999999999974 348999999999999999999999999999999999987 699999999998853 45
Q ss_pred HHHHhcceEEEcCCCCCchhcHHHHHhcCCCCC--CH---HHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 171 LRWLRDQIGLVNQEPALFATTILENILYGKPEA--TM---AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
...++++++|++|++.+|+.|++||+.++.... .. +++.++++..++ ..++.+.......+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAV-------WDECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCC-------cchhhhhhCCCcccCCHHHHH
Confidence 667788899999999999889999999864311 11 112222222211 112334556777899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeC-----------CE
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQ-----------GQ 313 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~-----------G~ 313 (987)
|++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999988768999999999998865 899999996 67
Q ss_pred EEEecChHHHHHh
Q 001980 314 VVETGTHEELIAK 326 (987)
Q Consensus 314 i~~~g~~~~l~~~ 326 (987)
+++.|+.+++...
T Consensus 242 ~~~~~~~~~~~~~ 254 (269)
T PRK14259 242 LVEFNETKKIFNS 254 (269)
T ss_pred EEEeCCHHHHHhC
Confidence 8999999988653
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=355.75 Aligned_cols=201 Identities=26% Similarity=0.507 Sum_probs=172.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999953 359999999999999999999999999999999999999999999999998753 5678999
Q ss_pred EEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||++.+|.+ |++||+.++.. ..+ ++++.++++..++.+... ....+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~a 142 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-----------KRVEELSKGNQQKVQFIAA 142 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-----------CcHhhCCHHHHHHHHHHHH
Confidence 99999999875 99999975421 111 234555666666654332 2345799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~G 963 (987)
++++|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999999865 47899999999998865 8999999999998864
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=405.31 Aligned_cols=109 Identities=32% Similarity=0.492 Sum_probs=96.2
Q ss_pred cCCC-ccCCCCCCCChhHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh
Q 001980 872 AYKT-PVGERGVQLSGGQKQRIAIARAVLKNP---AILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR 946 (987)
Q Consensus 872 gldt-~vge~G~~LSgGQrQrlaLARAllr~p---~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~ 946 (987)
|++. .++.....||||||||++|||+|+++| +++||||||++||+.+...+.+.|+++. ++.|||+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4543 356677889999999999999999999 9999999999999999999999999875 5889999999999999
Q ss_pred ccCEEEEE------eCCEEEEecChhHHhcCCCchHHHHH
Q 001980 947 GVDCIGVV------QDGRIVEQGSHSELVSRPDGAYSRLL 980 (987)
Q Consensus 947 ~~D~Iivl------~~G~ive~Gt~~eLl~~~~g~f~~l~ 980 (987)
.||+|++| ++|+|++.|+|+++.+++.+.-.+.+
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t~~~l 937 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASYTGRYL 937 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccHHHHHH
Confidence 99999999 79999999999999987655444443
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=370.69 Aligned_cols=221 Identities=31% Similarity=0.524 Sum_probs=189.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCccCCC--CC
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LN 815 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~ 815 (987)
..|+++||+++|++ .++|+++||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 36999999999964 359999999999999999999999999999999999986 689999999999875 34
Q ss_pred HHHHhcccEEEccccccccccHHHHhccCCCC-------------------CCHHHHHHHHHHcCchhhHhhCCCcCCCc
Q 001980 816 LKSLRLKIGLVQQEPALFAASIFDNIAYGKEG-------------------ATEAEVVEAARAANVHGFVSALPNAYKTP 876 (987)
Q Consensus 816 l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~-------------------~sd~ei~~al~~a~l~~~i~~lp~gldt~ 876 (987)
...+|++++|+||++.+|.+|+++|+.++... ..++++.++++.+++.+.+ ++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV-------NDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh-------hHH
Confidence 66788999999999999999999999864210 1134466667777664333 233
Q ss_pred cCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEE-EEE
Q 001980 877 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCI-GVV 954 (987)
Q Consensus 877 vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~I-ivl 954 (987)
......+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 45556789999999999999999999999999999999999999999999998777899999999999865 8997 578
Q ss_pred eCCEEEEecChhHHhcCCC
Q 001980 955 QDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 955 ~~G~ive~Gt~~eLl~~~~ 973 (987)
++|++++.|+++++++.++
T Consensus 274 ~~G~i~~~g~~~~~~~~~~ 292 (305)
T PRK14264 274 TGGELVEYDDTDKIFENPE 292 (305)
T ss_pred cCCEEEEeCCHHHHHhCcc
Confidence 9999999999999986543
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=366.94 Aligned_cols=220 Identities=29% Similarity=0.406 Sum_probs=181.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCC--CCCH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIK--TLQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~--~~~~ 171 (987)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. ..+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999974 3489999999999999999999999999999999999987 4999999999986 3455
Q ss_pred HHHhcceEEEcCCCCCchh-cHHHHHhcCCCC----CCHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHH
Q 001980 172 RWLRDQIGLVNQEPALFAT-TILENILYGKPE----ATMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqk 244 (987)
..++++++|++|++.+|+. |++||+.++... ...+...... .+.++.+ ...+.......+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 155 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERV-----EWALKKAALWDEVKDRLNDYPSNLSGGQR 155 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHH-----HHHHHHcCCccchhhhhccChhhCCHHHH
Confidence 5677889999999999976 999999875311 0111111111 1122222 11112345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (253)
T PRK14267 156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKV 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767999999999998765 899999999999999999888
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14267 236 FEN 238 (253)
T ss_pred HhC
Confidence 653
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=363.27 Aligned_cols=224 Identities=28% Similarity=0.448 Sum_probs=183.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcc-----CCCCCHHH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD-----IRRLNLKS 818 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~d-----i~~i~l~~ 818 (987)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999964 359999999999999999999999999999999999999999999999999 87776654
Q ss_pred ----HhcccEEEccccc--cc-cccHHHHhccCC---CCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCC
Q 001980 819 ----LRLKIGLVQQEPA--LF-AASIFDNIAYGK---EGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQL 884 (987)
Q Consensus 819 ----lR~~i~~VpQdp~--lF-~gTIreNL~~~~---~~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 884 (987)
+|+.++|+||++. ++ ..|+.+|+.+.. .... ++.+.++++..++.+ +.....+..|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~L 152 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTF 152 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccC
Confidence 3567999999984 33 357888875321 1111 122333344433321 2334556789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEE
Q 001980 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVE 961 (987)
Q Consensus 885 SgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive 961 (987)
|||||||++|||||+++|+||||||||++||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus 153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~ 232 (258)
T PRK11701 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998653 7899999999999974 89999999999999
Q ss_pred ecChhHHhcCCCchHHHHH
Q 001980 962 QGSHSELVSRPDGAYSRLL 980 (987)
Q Consensus 962 ~Gt~~eLl~~~~g~f~~l~ 980 (987)
.|+++++..++...|.+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~ 251 (258)
T PRK11701 233 SGLTDQVLDDPQHPYTQLL 251 (258)
T ss_pred eCCHHHHhcCCCCHHHHHH
Confidence 9999999876555565443
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=365.48 Aligned_cols=220 Identities=30% Similarity=0.484 Sum_probs=185.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999743 23589999999999999999999999999999999999999999999999999887777788899
Q ss_pred EEEcCCCC-Cc-hhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 179 GLVNQEPA-LF-ATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 179 ~~v~Q~~~-l~-~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+|++|+|. +| ..|+++|+.++... ...++..+. +.+.++.+ |+.......+.+||||||||++|||||+
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRR-----VSEALKQV--DMLERADYEPNALSGGQKQRVAIAGVLA 158 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHH-----HHHHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999995 44 55999999886321 112221111 11223333 4444556677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 159 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999998753 7999999999998878999999999999999999987654
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=362.42 Aligned_cols=217 Identities=25% Similarity=0.441 Sum_probs=184.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-Hhcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 177 (987)
.++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3889999999974 35899999999999999999999999999999999999999999999999998776543 5678
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPE---ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
++|++|++.+++. |++||+.+.... ...++. ...+.+.++.+ |++........+||||||||++|||||
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 9999999998875 999999875321 111111 11223445555 666666778889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
+.+|++|||||||++||+.+++.+.+.+.++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999998875 48999999999987765 89999999999999999988754
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=369.98 Aligned_cols=214 Identities=32% Similarity=0.509 Sum_probs=182.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|+. ...+|+||||+|++|+++|++||||||||||+|+|+|++.|++|+|.++|.+...- ..+.+++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999973 23599999999999999999999999999999999999999999999999988765 66778899
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 179 GLVNQEPALFAT-TILENILYGKPE------ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
||+||+|.+++. |++||+.|.... ...+++.+.+ +.+ |+......+...||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l---------~~~--~L~~~~~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL---------ELF--GLEDKANKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHH---------HHc--CCchhhCcchhhcCHHHHHHHHHHH
Confidence 999999998876 999999874221 1122333333 333 4433235567789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC-C-CeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLMV-G-RTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~-~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
||+.+|++|||||||++|||.++..+.+.|+++.+ + +||+++||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999864 5 799999999999987 899999999999999998887543
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=334.13 Aligned_cols=223 Identities=26% Similarity=0.446 Sum_probs=190.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL-RDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~ 177 (987)
.+.++|+.++|.. +++++++||++++||+|++.||||+||||.+.++.|+.+|++|+|.+||.|++.++.... |-.
T Consensus 4 ~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 4889999999974 458999999999999999999999999999999999999999999999999999998654 446
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|||+||+|.+|.+ ||+|||..-.+... .......+...+.+.++.+ .+.......+..||||||+|+.|||||+.+
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~-~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~ 157 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIRE-KDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAAN 157 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcC
Confidence 9999999999987 99999986543111 1111122222333445555 677778889999999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCc-cccCCEEEEEeCCEEEEecChHHHHHhh
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLST-IRNVDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~-~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
|+.+||||||+++||.+...|++.++.++ +|..|++.-|+..+ +.-|||.|++.+|++..+|+++|+.++.
T Consensus 158 P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 158 PKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred CCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 99999999999999999999999999886 58899999999875 5669999999999999999999997653
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=368.69 Aligned_cols=221 Identities=28% Similarity=0.476 Sum_probs=184.5
Q ss_pred cEEEEeEEEECCCCC---CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC-HHHH
Q 001980 99 NIEFKNVTFSYPSRP---DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ-LRWL 174 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~---~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~ 174 (987)
.++++|++++|++.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997431 245999999999999999999999999999999999999999999999999987643 3456
Q ss_pred hcceEEEcCCCC--CchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHH
Q 001980 175 RDQIGLVNQEPA--LFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250 (987)
Q Consensus 175 ~~~i~~v~Q~~~--l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialA 250 (987)
++.++|++|+|. ++..|+.||+.|+... ....+..+. +.+.++.+ |+.........+||||||||++||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LS~G~~qrv~la 156 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER-----VDESLKKV--GMYEYRRHAPHLLSGGQKQRVAIA 156 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHH-----HHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHH
Confidence 788999999984 5666999999986321 111111111 12223333 555556667789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 251 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|||+.+|+++||||||++||+.++..+.+.|.++. .|.|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 157 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999999885 38999999999999888999999999999999999998654
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=367.30 Aligned_cols=213 Identities=30% Similarity=0.474 Sum_probs=182.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5899999999974 3589999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCC-------C---HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHH
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEA-------T---MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRi 247 (987)
+|++|++.++.. |+.||+.++.... . .+++... ++.+ |+.........+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEA---------ISLV--GLKPLAHRLVDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHH---------HHHc--CCHHHhcCCcccCCHHHHHHH
Confidence 999999877665 9999998753210 0 1122222 3332 444445556678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
+|||||+.+|+++||||||++||+.+++.+.+.|.++. . ++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999999999999999999999999999885 3 7999999999999865 8999999999999999988875
Q ss_pred H
Q 001980 325 A 325 (987)
Q Consensus 325 ~ 325 (987)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 4
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=361.67 Aligned_cols=221 Identities=27% Similarity=0.462 Sum_probs=185.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-Hhcce
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQI 178 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~i 178 (987)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+..+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999974 35899999999999999999999999999999999999999999999999988776554 34579
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCCC--HHH---HHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEAT--MAE---VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
+|++|++.+|++ |++||+.++..... ... .........+.+.++.+ |++........+||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999987 99999987532100 000 00001111233445554 66666778888999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999998778999999999999875 89999999999999999988754
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=345.42 Aligned_cols=178 Identities=34% Similarity=0.629 Sum_probs=163.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++++|++. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 4789999999753 23589999999999999999999999999999999999999999999999988665 556778899
Q ss_pred EEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 001980 180 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKI 259 (987)
Q Consensus 180 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~i 259 (987)
|++|++++++.|++||+ +.+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999988999998 358999999999999999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEec
Q 001980 260 LLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETG 318 (987)
Q Consensus 260 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g 318 (987)
+||||||++||+.+++.+.+.|.++.+++|+|++||+++.+..+|++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999886789999999999999889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=357.78 Aligned_cols=209 Identities=33% Similarity=0.524 Sum_probs=172.8
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH---HHHh
Q 001980 745 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL---KSLR 820 (987)
Q Consensus 745 I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l---~~lR 820 (987)
|+++||+++|++.. +.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 1259999999999999999999999999999999999999999999999999988774 5778
Q ss_pred cccEEEcccc--ccc-cccHHHHhccCC----CCCCHHHH----HHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 821 LKIGLVQQEP--ALF-AASIFDNIAYGK----EGATEAEV----VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 821 ~~i~~VpQdp--~lF-~gTIreNL~~~~----~~~sd~ei----~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
++++|+||+| .++ ..|+++|+.++. +...+++. .+.++..++.+ ........+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 9999999999 344 579999997531 11112211 13344444321 122344467999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEec
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQG 963 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~G 963 (987)
||++|||||+++|++|||||||++||+.+...+.+.|++..+ ++|||++||+++.+. .||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999998764 789999999999987 58999999999998865
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=366.89 Aligned_cols=219 Identities=29% Similarity=0.488 Sum_probs=183.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|+++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999632 2489999999999999999999999999999999999999999999999999877777778899
Q ss_pred EEEcCCCC--CchhcHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 179 GLVNQEPA--LFATTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 179 ~~v~Q~~~--l~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+|++|+|. +++.|++||+.++.. ..+.++..+ ...+.++.+ |+.......+..||||||||++|||||+
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrl~laraL~ 153 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH-----RVSSALHML--GLEELRDRVPHHLSGGEKKRVAIAGVIA 153 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999983 677899999987532 112221111 112233333 4444456667799999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|+++||||||++||+.+++.+.+.++++.+ +.|+|++||+++.+. .||||++|++|++++.|+++++.+.
T Consensus 154 ~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 154 MEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999998753 899999999999985 5899999999999999999998754
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=372.84 Aligned_cols=216 Identities=24% Similarity=0.406 Sum_probs=185.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+++++|
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999973 358999999999999999999999999999999999999999999999999876 3456778899
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 180 LVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|+||++.+++. |++||+.+.... ...++..+ ...+.++.+ |++........+||||||||++|||||+++
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999876 999999763211 11111111 122344554 676667788889999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|+++||||||++||+.+++.+++.++++.+++|+|++||+++.+.. ||||++|++|+++..|+.+++.+.
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999998778999999999998876 899999999999999999998653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=369.74 Aligned_cols=222 Identities=28% Similarity=0.496 Sum_probs=182.1
Q ss_pred ccEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC----C-C
Q 001980 98 GNIEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT----L-Q 170 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~----~-~ 170 (987)
+.|+++|++++|+++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4599999999997532 1358999999999999999999999999999999999999999999999998852 1 3
Q ss_pred HHHHhcceEEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHH
Q 001980 171 LRWLRDQIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQ 245 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkq 245 (987)
...+++.|+|++|+| .+++.|++||+.++... ...++..+. +.+.++.+ |+. ......+.+|||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~ll~~~--~L~~~~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK-----VPELLKLV--QLPEDYVKRSPFELSGGQKR 157 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhcCChhhCCHHHHH
Confidence 456778899999998 46778999999876321 122222111 11223333 442 3456777899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEE 322 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 322 (987)
|++|||||+.+|++|||||||++||+.+++.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999875 38999999999998765 89999999999999999988
Q ss_pred HHHh
Q 001980 323 LIAK 326 (987)
Q Consensus 323 l~~~ 326 (987)
+...
T Consensus 238 ~~~~ 241 (289)
T PRK13645 238 IFSN 241 (289)
T ss_pred HhcC
Confidence 7653
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=362.74 Aligned_cols=218 Identities=35% Similarity=0.548 Sum_probs=183.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC--------
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ-------- 170 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~-------- 170 (987)
.++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3889999999974 34899999999999999999999999999999999999999999999999986532
Q ss_pred HHHHhcceEEEcCCCCCch-hcHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHH
Q 001980 171 LRWLRDQIGLVNQEPALFA-TTILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqR 246 (987)
...+++.++|++|++.+++ .|++||+.++.. ....++..+ .+.+.++.+ |+.......+.+||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKV--GLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCcchhhCChhhCChHHHHH
Confidence 2456778999999999886 599999986421 111111111 122344444 66655677888999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
++|||||+.+|+++||||||++||+.+++.+.+.|.++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999875 48999999999999865 8999999999999999998876
Q ss_pred Hh
Q 001980 325 AK 326 (987)
Q Consensus 325 ~~ 326 (987)
+.
T Consensus 233 ~~ 234 (250)
T PRK11264 233 AD 234 (250)
T ss_pred cC
Confidence 43
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=360.29 Aligned_cols=214 Identities=31% Similarity=0.487 Sum_probs=178.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH-Hhcce
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQI 178 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~i 178 (987)
|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 478999999974 35899999999999999999999999999999999999999999999999998776654 45689
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
+|++|++.+|+. |++||+.++........ .+. ..+.++.+ +++.........+||||||||++|||||+++|
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~-~~~-----~~~~l~~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRS-RKI-----PDEIYELF-PVLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcch-HHH-----HHHHHHHH-HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999976 99999987632211110 000 01112211 11233456677799999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
+++||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+.. ||+|+++++|++++.|+++++
T Consensus 151 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999998753 7999999999999886 899999999999999999887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=366.95 Aligned_cols=220 Identities=30% Similarity=0.451 Sum_probs=182.3
Q ss_pred EEEEeEEEECCCC------CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH-
Q 001980 100 IEFKNVTFSYPSR------PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR- 172 (987)
Q Consensus 100 i~~~~~~~~y~~~------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~- 172 (987)
|+++|++|+|+.. .+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 134689999999999999999999999999999999999999999999999999876653
Q ss_pred --HHhcceEEEcCCCC--Cch-hcHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHH
Q 001980 173 --WLRDQIGLVNQEPA--LFA-TTILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQ 243 (987)
Q Consensus 173 --~~~~~i~~v~Q~~~--l~~-~tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGq 243 (987)
.+++.|+|++|+|. +++ .|++||+.++.. ....... ...+.+.++.+ |++ ......+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQ-----KARIAELLDMV--GLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence 35678999999983 443 599999975321 0111111 11123344444 664 34577788999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecCh
Q 001980 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTH 320 (987)
Q Consensus 244 kqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~ 320 (987)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 9999999999999999999999999999999999999998853 8999999999999875 899999999999999999
Q ss_pred HHHHHh
Q 001980 321 EELIAK 326 (987)
Q Consensus 321 ~~l~~~ 326 (987)
+++...
T Consensus 236 ~~~~~~ 241 (265)
T TIGR02769 236 AQLLSF 241 (265)
T ss_pred HHHcCC
Confidence 998763
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=362.12 Aligned_cols=205 Identities=31% Similarity=0.467 Sum_probs=174.8
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EARED 82 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCc
Confidence 35999999999974 34899999999999999999999999999999999999999999999998753 35678
Q ss_pred eEEEcCCCCCch-hcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 178 IGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 178 i~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
++|++|++.+++ .|++||+.++......+++. +.++.+ |+.......+.+||||||||++|||||+.+
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~---------~~l~~~--gl~~~~~~~~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLKGQWRDAAL---------QALAAV--GLADRANEWPAALSGGQKQRVALARALIHR 151 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhcccchHHHHHH---------HHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999999887 59999999864211112222 233333 555556677789999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChH
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE 321 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 321 (987)
|+++||||||++||+.++..+.+.|.++. .++|+|++||+++.+.. ||+|++|++|+++++|+.+
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999998874 37999999999998765 8999999999999888654
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=360.22 Aligned_cols=213 Identities=35% Similarity=0.518 Sum_probs=174.7
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH---HHHh
Q 001980 100 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL---RWLR 175 (987)
Q Consensus 100 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~ 175 (987)
|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999997431 1258999999999999999999999999999999999999999999999999987663 4677
Q ss_pred cceEEEcCCC--CCc-hhcHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHHHHH
Q 001980 176 DQIGLVNQEP--ALF-ATTILENILYGKPE---ATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIA 248 (987)
Q Consensus 176 ~~i~~v~Q~~--~l~-~~tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkqRia 248 (987)
++++|++|++ .++ ..|++||+.++... ...++..+.. ..+.++.+ |+. ......+.+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~----~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA----VLLLLVGV--GLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH----HHHHHHHC--CCChhHhhCCchhcCHHHHHHHH
Confidence 8899999999 344 45999999864211 1111111100 01334444 553 4567778899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 249 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
|||||+.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998853 8999999999999874 8999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=356.91 Aligned_cols=201 Identities=34% Similarity=0.573 Sum_probs=171.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC--CCHHHHhcc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR--LNLKSLRLK 822 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~--i~l~~lR~~ 822 (987)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999964 359999999999999999999999999999999999999999999999999853 455678899
Q ss_pred cEEEcccccccc-ccHHHHhccCCC---CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 823 IGLVQQEPALFA-ASIFDNIAYGKE---GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 823 i~~VpQdp~lF~-gTIreNL~~~~~---~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
++|+||++.+|. .|++||+.++.. ..+. +++.++++..++.+.... ...+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADA-----------YPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhh-----------CccccCHHHHHHHHH
Confidence 999999999886 699999976421 2222 234555666655444332 335799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEE
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRI 959 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~i 959 (987)
|||++++|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999875 47899999999999965 899999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=358.73 Aligned_cols=209 Identities=35% Similarity=0.498 Sum_probs=173.2
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 100 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 100 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
++++|++++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 46899999997421 1459999999999999999999999999999999999999999999999998763 35689
Q ss_pred EEEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+|++|++.+++ .|++||+.++... ....... ..+.+.++.+ |+.........+||||||||++|||||+.
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEAR-----ERAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999887 5999999875321 1111111 1122334444 55555666778999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEe--CCEEEEecCh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQ--QGQVVETGTH 320 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~--~G~i~~~g~~ 320 (987)
+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|+ +|+++++++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999999874 37999999999998765 89999999 7999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=367.46 Aligned_cols=220 Identities=29% Similarity=0.519 Sum_probs=185.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc---cEEEECCEeCCCCCHHHHh
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA---GHVLLDNVDIKTLQLRWLR 175 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~---G~i~~~g~~~~~~~~~~~~ 175 (987)
.|+++|++|+|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...++
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 58999999999743 2358999999999999999999999999999999999999998 8999999999877766777
Q ss_pred cceEEEcCCCC--CchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 176 DQIGLVNQEPA--LFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 176 ~~i~~v~Q~~~--l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
++|+|++|+|. +++.|++||+.++... .+.++..+. +.+.++.+ |+.........+||||||||++|||
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~LS~G~~qrv~lar 156 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKI-----VRDVLADV--GMLDYIDSEPANLSGGQKQRVAIAG 156 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHH-----HHHHHHHC--CChhHhcCCcccCCHHHHHHHHHHH
Confidence 89999999984 4577999999876332 122221111 12223333 5555566777899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
||+.+|+++||||||++||+.+++.+.+.|.++.+ |+|||++||+++.+..||++++|++|++++.|+++++...
T Consensus 157 al~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 157 ILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998753 8999999999999888999999999999999999887653
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=356.43 Aligned_cols=207 Identities=31% Similarity=0.534 Sum_probs=173.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGNV---TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECCe---eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 4789999999743 489999999999999999999999999999999999999999999999998765432 35799
Q ss_pred EEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 180 LVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 180 ~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|++|++.+++ .|++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~laral~~~ 148 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-----RVREVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999886 4999999875321 11122111 112233443 555556677789999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999875 38999999999998876 8999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=365.47 Aligned_cols=221 Identities=29% Similarity=0.430 Sum_probs=180.8
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CC
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--LQ 170 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--~~ 170 (987)
..++++|++++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 20 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 20 HILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred ceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 35899999999974 348999999999999999999999999999999999864 799999999999864 33
Q ss_pred HHHHhcceEEEcCCCCCchhcHHHHHhcCCCCC---CHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHHH
Q 001980 171 LRWLRDQIGLVNQEPALFATTILENILYGKPEA---TMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqkq 245 (987)
...++++++|++|++.+|+.|++||+.++.... ......+. +.+.+..+ ..++....+..+.+|||||||
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEI-----VEESLTKAALWDEVKDRLHSSALSLSGGQQQ 171 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHH-----HHHHHHHcCCCcchHHHHhcCcccCCHHHHH
Confidence 446678899999999999889999998753211 11111111 11112222 111123456778899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
|++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998767899999999998765 8999999999999999998876
Q ss_pred Hh
Q 001980 325 AK 326 (987)
Q Consensus 325 ~~ 326 (987)
..
T Consensus 252 ~~ 253 (268)
T PRK14248 252 TS 253 (268)
T ss_pred hC
Confidence 53
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=368.79 Aligned_cols=220 Identities=32% Similarity=0.547 Sum_probs=183.3
Q ss_pred EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----CHHH
Q 001980 100 IEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL----QLRW 173 (987)
Q Consensus 100 i~~~~~~~~y~~~~--~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~----~~~~ 173 (987)
++++|++++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 13589999999999999999999999999999999999999999999999998753 3456
Q ss_pred HhcceEEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHHHHH
Q 001980 174 LRDQIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIA 248 (987)
Q Consensus 174 ~~~~i~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkqRia 248 (987)
+++.|+|++|++ .+++.|++||+.++... .+.++..+. +.+.++.+ |+. ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 778899999998 57788999999875321 122222211 12334433 554 3456778899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 249 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|||||+.+|++|||||||++||+.+++.+.+.|.++. .++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999875 48999999999998865 899999999999999999887653
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=364.40 Aligned_cols=220 Identities=29% Similarity=0.461 Sum_probs=181.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCCC--H
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTLQ--L 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~--~ 171 (987)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++...+ .
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999973 3489999999999999999999999999999999999985 8999999999886432 3
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHHHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQRI 247 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqkqRi 247 (987)
..+++.++|++|++.+|+.|++||+.++... ...++..+ .+.+.++.+ ...........+.+||||||||+
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv 163 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDG-----VVENALRSAALWDETSDRLKSPALSLSGGQQQRL 163 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHH
Confidence 4567789999999999989999999875311 11221111 111222322 00112345667789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 243 (258)
T PRK14268 164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243 (258)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999988768999999999998865 899999999999999999988643
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=362.86 Aligned_cols=212 Identities=26% Similarity=0.419 Sum_probs=184.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC--------CceEEECCccCCCCCH
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT--------AGKVMIDGKDIRRLNL 816 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~--------~G~I~idG~di~~i~l 816 (987)
|+++|++++|.+ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999953 35999999999999999999999999999999999999998 9999999999988888
Q ss_pred HHHhcccEEEccccc-cccccHHHHhccCCC-C------C---CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCC
Q 001980 817 KSLRLKIGLVQQEPA-LFAASIFDNIAYGKE-G------A---TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLS 885 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~-lF~gTIreNL~~~~~-~------~---sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 885 (987)
..+|+.++|+||++. +|..|++||+.++.. . . .++.++++++..++.++ .......||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATAL-----------VGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCC
Confidence 888889999999986 678999999976421 1 1 12345666666666443 333446799
Q ss_pred hhHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEE
Q 001980 886 GGQKQRIAIARAVL---------KNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGV 953 (987)
Q Consensus 886 gGQrQrlaLARAll---------r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iiv 953 (987)
||||||++|||||+ .+|++|||||||++||+.+...+.+.|++..+ ++|||+|||+++.+. .||+|++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999998753 789999999999986 5899999
Q ss_pred EeCCEEEEecChhHHhc
Q 001980 954 VQDGRIVEQGSHSELVS 970 (987)
Q Consensus 954 l~~G~ive~Gt~~eLl~ 970 (987)
|++|++++.|++++++.
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999999875
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=364.12 Aligned_cols=217 Identities=32% Similarity=0.537 Sum_probs=183.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC---------
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ--------- 170 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~--------- 170 (987)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 478999999974 35899999999999999999999999999999999999999999999999886543
Q ss_pred ----HHHHhcceEEEcCCCCCch-hcHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChH
Q 001980 171 ----LRWLRDQIGLVNQEPALFA-TTILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG 242 (987)
Q Consensus 171 ----~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgG 242 (987)
...+++.++|++|++.+++ .|+.||+.++.. ......... .+.+.++.+ |++....+.+.+||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDMV--GLADKADHMPAQLSGG 150 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhHhhcChhhcCHH
Confidence 2356778999999999886 599999987521 111111111 123445554 6666677788899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecC
Q 001980 243 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGT 319 (987)
Q Consensus 243 qkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 319 (987)
||||++|||||+.+|+++||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. +|++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998753 8999999999999864 89999999999999999
Q ss_pred hHHHHHh
Q 001980 320 HEELIAK 326 (987)
Q Consensus 320 ~~~l~~~ 326 (987)
++++.+.
T Consensus 231 ~~~~~~~ 237 (252)
T TIGR03005 231 PDEIFRQ 237 (252)
T ss_pred HHHHhcC
Confidence 9888643
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=364.30 Aligned_cols=216 Identities=30% Similarity=0.461 Sum_probs=183.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++ .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+..++++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999973 35899999999999999999999999999999999999999999999999988777777778899
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCCC----C--HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 180 LVNQEPALFAT-TILENILYGKPEA----T--MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
|++|++.++++ |+.||+.++.... . ..+.. ..+.+.++.+ |++......+..||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lara 152 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDN-----ARVNQAMEQT--RINHLADRRLTDLSGGQRQRAFLAMV 152 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHH-----HHHHHHHHHc--CCHHHHcCCcccCCHHHHHHHHHHHH
Confidence 99999988876 9999999863210 0 01110 0111223332 45445566778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
++.+|+++||||||++||+.+++.+.+.|.++. +++|+|++||+++.+.. +|++++|++|+++..|+.+++..
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999998875 48999999999999865 89999999999999999988754
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=356.76 Aligned_cols=213 Identities=29% Similarity=0.430 Sum_probs=180.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5899999999974 3489999999999999999999999999999999999999999999999999888777778899
Q ss_pred EEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 179 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 179 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
+|++|++.+|+.|++||+.++.......... ..+.+.++.+ |+. +.....+.+||||||||++|||||+++|
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDP-----AIFLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQFMP 156 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHH-----HHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999889999998642100000000 1112344444 553 4567788899999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCccccCCEEEEEe-CCEEEEecChH
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQ-QGQVVETGTHE 321 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~~l~-~G~i~~~g~~~ 321 (987)
+++||||||++||+.+.+.+.+.|.++. .++|+|++||+++.++.||++++|+ ++..+++|+|+
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 157 KVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999874 3889999999999998899999994 66677778765
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=377.19 Aligned_cols=205 Identities=29% Similarity=0.434 Sum_probs=171.7
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE----eCCCCCHHHH---h-cceEEEcCCCC
Q 001980 115 VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV----DIKTLQLRWL---R-DQIGLVNQEPA 186 (987)
Q Consensus 115 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~----~~~~~~~~~~---~-~~i~~v~Q~~~ 186 (987)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++...+...+ | ++|+|++|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 35799999999999999999999999999999999999999999999996 5555554433 3 57999999999
Q ss_pred Cch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 001980 187 LFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLD 263 (987)
Q Consensus 187 l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlD 263 (987)
+|+ .|++||+.++... ...++.. ..+.+.++.+ |+.........+||||||||++|||||+.+|+|||||
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~-----~~a~e~le~v--gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERR-----KRVDEQLELV--GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 997 5999999987421 1111111 1112334443 5655566677899999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHHHh
Q 001980 264 EATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 264 Epts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|||++||+.+++.+++.|.++.+ ++|+|+|||+++++. .+|+|++|++|++++.|+++++..+
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 190 EPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 99999999999999999998853 899999999999875 4899999999999999999998764
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=360.94 Aligned_cols=226 Identities=28% Similarity=0.414 Sum_probs=187.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC----CCceEEECCccCCCCCHHHH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP----TAGKVMIDGKDIRRLNLKSL 819 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p----~~G~I~idG~di~~i~l~~l 819 (987)
.|+++|++++| + .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.+++.. +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 58999999999 3 2589999999999999999999999999999999999999 999999999998632 223
Q ss_pred hcccEEEccccc-ccc--ccHHHHhccC----CCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 820 RLKIGLVQQEPA-LFA--ASIFDNIAYG----KEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 820 R~~i~~VpQdp~-lF~--gTIreNL~~~----~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
++.++||||++. .|. .|+.+|+... .....+++++++++..++.++. +.+......||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA--------RVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChh--------hhhhcCCcccCHHHHHHH
Confidence 467999999985 343 5777776431 1223456778888888876531 122344567999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
+|||||+++|+||||||||++||+.+...+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|++++++
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999999865 8999999999999999999998
Q ss_pred cCCCc-hHHHHHHhh
Q 001980 970 SRPDG-AYSRLLQLQ 983 (987)
Q Consensus 970 ~~~~g-~f~~l~~~q 983 (987)
+++.. .++.++..+
T Consensus 230 ~~~~~~~~~~~~~~~ 244 (254)
T PRK10418 230 NAPKHAVTRSLVSAH 244 (254)
T ss_pred hCCCCHHHHHHHHhh
Confidence 76544 455566554
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=361.53 Aligned_cols=218 Identities=30% Similarity=0.521 Sum_probs=182.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCEeCCCC--CH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN-----AGHVLLDNVDIKTL--QL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~-----~G~i~~~g~~~~~~--~~ 171 (987)
.++++|++|+|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 4899999999974 34899999999999999999999999999999999999997 69999999988643 34
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCC--C-CHHHH----HHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPE--A-TMAEV----EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~--~-~~~~~----~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
..+++.++|++|++.+|+.|++||+.++... . ..++. .++++..++ .+++.......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAAL-------WDEVKDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCC-------chhhhhHhhCCcccCCHHHH
Confidence 5678889999999999988999999876321 1 11111 112222221 11223446678889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988668999999999999876 799999999999999999887
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 543
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=341.76 Aligned_cols=221 Identities=29% Similarity=0.481 Sum_probs=191.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcce
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL-RDQI 178 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~i 178 (987)
+++++++++|++ ..+++|+||++++||+++|+||||||||||+++|+|+|+|++|+|.++|+++..+++..+ |..|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 679999999984 459999999999999999999999999999999999999999999999999999988765 4569
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCC-----------CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHH
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEA-----------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqR 246 (987)
+--+|.+.+|++ ||.||+..+.... ...+..++ ...+.+.++.+ |+....++...+||+|||+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~--~e~A~~~Le~v--gL~~~a~~~A~~LsyG~qR~ 157 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREA--RERARELLEFV--GLGELADRPAGNLSYGQQRR 157 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHH--HHHHHHHHHHc--CCchhhcchhhcCChhHhHH
Confidence 999999999987 9999999863211 00011111 12223455555 88888888999999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
+.|||||+.+|++|+||||.++|.+...+.+.+.|+++++ |.|+++|.||++.+.. ||||+||+.|+++.+|+++|+
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV 237 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEV 237 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHH
Confidence 9999999999999999999999999999999999999974 5999999999999865 899999999999999999998
Q ss_pred HHhh
Q 001980 324 IAKA 327 (987)
Q Consensus 324 ~~~~ 327 (987)
.++.
T Consensus 238 ~~dp 241 (250)
T COG0411 238 RNNP 241 (250)
T ss_pred hcCH
Confidence 7653
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=365.77 Aligned_cols=217 Identities=28% Similarity=0.425 Sum_probs=179.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC--CCCHHHHhcc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK--TLQLRWLRDQ 177 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~~~~ 177 (987)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...++++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999974 34899999999999999999999999999999999999999999999999985 2334566778
Q ss_pred eEEEcCCCC--CchhcHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 178 IGLVNQEPA--LFATTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 178 i~~v~Q~~~--l~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
|+|++|++. ++..|+.+|+.++.. ....++..+. +.+.++.+ |+.........+||||||||++|||||
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR-----VDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 999999985 566799999987421 1122221111 12223333 444344566779999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+.+|+++||||||++||+.+++.+.+.|.++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999875 48999999999999865 899999999999999999887653
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=365.01 Aligned_cols=219 Identities=26% Similarity=0.392 Sum_probs=184.4
Q ss_pred CccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhc
Q 001980 97 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD 176 (987)
Q Consensus 97 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 176 (987)
...|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++
T Consensus 5 ~~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (265)
T PRK10253 5 VARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81 (265)
T ss_pred ccEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 346999999999974 35899999999999999999999999999999999999999999999999998877777778
Q ss_pred ceEEEcCCCCCch-hcHHHHHhcCCC-CC-----CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 177 QIGLVNQEPALFA-TTILENILYGKP-EA-----TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 177 ~i~~v~Q~~~l~~-~tv~eni~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
.++|++|++.++. .|++||+.++.. .. ..+.. ...+.+.++.+ |+.......+.+||||||||++|
T Consensus 82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~l 154 (265)
T PRK10253 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKED-----EEAVTKAMQAT--GITHLADQSVDTLSGGQRQRAWI 154 (265)
T ss_pred heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHH-----HHHHHHHHHHc--CCHHHhcCCcccCChHHHHHHHH
Confidence 8999999998875 599999987531 10 00110 01112233333 45445567778999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|||++.+|+++||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 155 aral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 9999999999999999999999999999999998853 7899999999998765 89999999999999999988764
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=363.99 Aligned_cols=219 Identities=32% Similarity=0.524 Sum_probs=183.2
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC--------
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL-------- 169 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~-------- 169 (987)
+.++++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 45999999999974 3589999999999999999999999999999999999999999999999987532
Q ss_pred -----CHHHHhcceEEEcCCCCCchh-cHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCcccc-cCCCCCC
Q 001980 170 -----QLRWLRDQIGLVNQEPALFAT-TILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQV-GERGVQL 239 (987)
Q Consensus 170 -----~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~-~~~g~~L 239 (987)
+...++++++|++|++.+++. |++||+.++.. ........ ..+.+.++.+ |+.... ...+.+|
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~L 153 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEAR-----ERAVKYLAKV--GIDERAQGKYPVHL 153 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHc--CCChhhhhCCcccC
Confidence 124567789999999999975 99999986421 11111111 1122344444 565543 6677899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEe
Q 001980 240 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVET 317 (987)
Q Consensus 240 SgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~ 317 (987)
|||||||++|||||+++|+++||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||||++|++|++++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999885 48999999999999886 899999999999999
Q ss_pred cChHHHHHh
Q 001980 318 GTHEELIAK 326 (987)
Q Consensus 318 g~~~~l~~~ 326 (987)
|+++++...
T Consensus 234 ~~~~~~~~~ 242 (257)
T PRK10619 234 GAPEQLFGN 242 (257)
T ss_pred CCHHHhhhC
Confidence 999887643
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=355.81 Aligned_cols=205 Identities=37% Similarity=0.617 Sum_probs=171.8
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 001980 101 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180 (987)
Q Consensus 101 ~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 180 (987)
+++|++++|++. ..++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999742 1358999999999999999999999999999999999999999999999999987777777889999
Q ss_pred EcCCCC--CchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 181 VNQEPA--LFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 181 v~Q~~~--l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
++|++. +++.|++||+.++... ....+..+ .+.+.++.+ |++..+.....+||||||||++|||||+++
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELV--GLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999984 5677999999875321 11111111 112334444 555556677789999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCE
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQ 313 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~ 313 (987)
|+++||||||++||+.+++.+.+.|.++. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999885 48999999999999887 89999999984
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=363.26 Aligned_cols=220 Identities=27% Similarity=0.444 Sum_probs=181.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CccEEEECCEeCCC--CCH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--P---NAGHVLLDNVDIKT--LQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--~---~~G~i~~~g~~~~~--~~~ 171 (987)
.|+++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|+++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999974 348999999999999999999999999999999999997 3 69999999999863 344
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCCC---CHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPEA---TMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqkqR 246 (987)
..+++.++|++|++.+|+.|++||+.++.... ..++..+. +.+.++.+ .+.+.+.....+.+||||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qr 163 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEI-----VEKSLKDVALWDEVKDRLHTQALSLSGGQQQR 163 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHH-----HHHHHHHcCCchhhhhhhhCCcccCCHHHHHH
Confidence 56778899999999999889999998753211 11111111 11222222 1111234567788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
++|||||+.+|+++||||||++||+.++..+.+.|.++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 243 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFS 243 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence 99999999999999999999999999999999999998778999999999998865 89999999999999999998865
Q ss_pred h
Q 001980 326 K 326 (987)
Q Consensus 326 ~ 326 (987)
+
T Consensus 244 ~ 244 (259)
T PRK14274 244 N 244 (259)
T ss_pred C
Confidence 3
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=360.72 Aligned_cols=213 Identities=24% Similarity=0.380 Sum_probs=177.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcc--CCCCCceEEECCccCCCCCHHHH-hc
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERF--YDPTAGKVMIDGKDIRRLNLKSL-RL 821 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl--~~p~~G~I~idG~di~~i~l~~l-R~ 821 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++...+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999963 3599999999999999999999999999999999999 47999999999999988877664 45
Q ss_pred ccEEEccccccccc-cHHHHhccCCCC---------CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 001980 822 KIGLVQQEPALFAA-SIFDNIAYGKEG---------AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 887 (987)
Q Consensus 822 ~i~~VpQdp~lF~g-TIreNL~~~~~~---------~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 887 (987)
.++|+||+|.+|.+ |+++|+.+.... .+ ++.+.++++..++.+.. .+..+. ..||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G 148 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGG 148 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHH
Confidence 69999999998875 899998643110 11 23345555555553211 122222 249999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc--cCEEEEEeCCEEEEecC
Q 001980 888 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG--VDCIGVVQDGRIVEQGS 964 (987)
Q Consensus 888 QrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~--~D~Iivl~~G~ive~Gt 964 (987)
||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999999875 47899999999999976 79999999999999999
Q ss_pred hhHHh
Q 001980 965 HSELV 969 (987)
Q Consensus 965 ~~eLl 969 (987)
++++.
T Consensus 229 ~~~~~ 233 (243)
T TIGR01978 229 VELAK 233 (243)
T ss_pred HHHhc
Confidence 98654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=361.32 Aligned_cols=216 Identities=29% Similarity=0.445 Sum_probs=182.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++++|++ ..+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999974 34899999999999999999999999999999999999999999999999988777777778899
Q ss_pred EEcCCCCC-chhcHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc--
Q 001980 180 LVNQEPAL-FATTILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML-- 254 (987)
Q Consensus 180 ~v~Q~~~l-~~~tv~eni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~-- 254 (987)
|++|++.+ ++.|++||+.++.... ..++..+ .+.+.++.+ |+.........+||||||||++|||||+
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGe~qrv~la~al~~~ 152 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDA-----LVAAALAQV--DLAHLAGRDYPQLSGGEQQRVQLARVLAQL 152 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHH-----HHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 99999987 4569999998863211 1111111 112233333 5555556677899999999999999999
Q ss_pred ----cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 255 ----KNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 255 ----~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
.+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 153 WEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred cccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 5999999999999999999999999999875 48999999999999874 89999999999999999988764
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=351.51 Aligned_cols=202 Identities=34% Similarity=0.580 Sum_probs=176.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
++++||+++|+. .++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ .+|+.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999952 468999999999999999999999999999999999999999999999987644 4678899
Q ss_pred EEcccccccc-ccHHHHhccCC-CC-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFA-ASIFDNIAYGK-EG-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~-gTIreNL~~~~-~~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||+|.+|. .|++||+.++. +. ..++++.++++..++.+...+.| .+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHH
Confidence 9999999987 49999997542 11 13456777888888877665554 3699999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecC
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGS 964 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt 964 (987)
++++|+++||||||++||+++...+.+.|++.. .++|+|+|||+++.+.. ||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999999875 37899999999998865 89999999999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=340.88 Aligned_cols=172 Identities=41% Similarity=0.697 Sum_probs=160.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++. ..++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999743 245899999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 001980 180 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKI 259 (987)
Q Consensus 180 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~i 259 (987)
|++|++++|+.|++||+ ||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999989999998 999999999999999999999
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCEEEEEeCCEE
Q 001980 260 LLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQV 314 (987)
Q Consensus 260 lllDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~~l~~G~i 314 (987)
+||||||++||+.++..+.+.|+++. +++|+|++||+++.+..||++++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999999885 48999999999998888999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=355.79 Aligned_cols=205 Identities=33% Similarity=0.520 Sum_probs=169.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHhc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WLRD 176 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~~ 176 (987)
++++|++++|++ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999952 23589999999999999999999999999999999999999999999999999876543 4567
Q ss_pred ceEEEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 177 QIGLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 177 ~i~~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
.++|++|++.+|+ .|++||+.++... .......+ .+.+.++.+ |+.........+||||||||++|||||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al 152 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQR-----RVGAALRQV--GLEHKADAFPEQLSGGEQQRVAIARAI 152 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 8999999999986 4999999875211 11111111 112233333 444344556679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCE
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQ 313 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~ 313 (987)
+.+|+++||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|+
T Consensus 153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999875 48999999999999876 89999999984
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=352.26 Aligned_cols=210 Identities=32% Similarity=0.478 Sum_probs=183.1
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH----HHHhc
Q 001980 101 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL----RWLRD 176 (987)
Q Consensus 101 ~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~----~~~~~ 176 (987)
.+.|+.|+|+.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...++
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999743 458999999999999999999999999999999999999999999999998865432 23456
Q ss_pred ceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 177 QIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
.++|++|+|.+++.|++||+.++.+. ..++..++++..++.+.+..+|.|+++.++....+||||||||++|||||+.+
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPF-NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcC-CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 79999999999988999999986532 34455666777777777888899999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHH--HHHhhh-CCCeEEEEcCCCCccccCCEEEEEeCCE
Q 001980 257 PKILLLDEATSALDAGSESIVQE--ALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQ 313 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~--~l~~~~-~~~tvi~vtH~~~~~~~~d~i~~l~~G~ 313 (987)
|+++||||||++||+.+++.+.+ .++.+. .+.|+|++||+++.+..+|++++|++|.
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999998887 455554 3799999999999988899999999873
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=359.83 Aligned_cols=215 Identities=27% Similarity=0.458 Sum_probs=181.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC------CCHHH
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT------LQLRW 173 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~------~~~~~ 173 (987)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999974 348999999999999999999999999999999999999999999999998731 23356
Q ss_pred HhcceEEEcCCCCCchh-cHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 174 LRDQIGLVNQEPALFAT-TILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 174 ~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
++++|+|++|++.+|+. |++||+.++.. .....+.. ..+.+.++.+ |++..+.....+||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHH
Confidence 67789999999999875 99999975311 11111111 1223445554 66666777788999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
||||+.+|+++||||||++||+.++..+.+.|+++. .++|+|++||+++.+.. +|++++|++|++++.|+++++.
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 229 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence 999999999999999999999999999999999875 48999999999999865 8999999999999999988764
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=361.45 Aligned_cols=223 Identities=25% Similarity=0.428 Sum_probs=187.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC---CceEEECCccCCCC-----C
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT---AGKVMIDGKDIRRL-----N 815 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~---~G~I~idG~di~~i-----~ 815 (987)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|+ +|+|.+||.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999963 35999999999999999999999999999999999999986 49999999998654 3
Q ss_pred HHHHhcccEEEcccccccc-ccHHHHhccCCCC--------------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCC
Q 001980 816 LKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEG--------------ATEAEVVEAARAANVHGFVSALPNAYKTPVGER 880 (987)
Q Consensus 816 l~~lR~~i~~VpQdp~lF~-gTIreNL~~~~~~--------------~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~ 880 (987)
...+|++++|+||++.+|. .|+++|+.++... ..++++.++++..++.+.... .
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------R 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------C
Confidence 4567889999999999887 5999999764211 113356677777777554432 3
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCC
Q 001980 881 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDG 957 (987)
Q Consensus 881 G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~-~~D~Iivl~~G 957 (987)
...||||||||++|||||+.+|++|||||||++||.++...+.+.|++.. +++|+|+|||+++.+. .||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 34699999999999999999999999999999999999999999999875 3789999999999865 58999999999
Q ss_pred EEEEecChhHHhcCCCchHHHHHHhh
Q 001980 958 RIVEQGSHSELVSRPDGAYSRLLQLQ 983 (987)
Q Consensus 958 ~ive~Gt~~eLl~~~~g~f~~l~~~q 983 (987)
++++.|+++++ . +....+++...
T Consensus 230 ~i~~~g~~~~~-~--~~~~~~~~~~~ 252 (262)
T PRK09984 230 HVFYDGSSQQF-D--NERFDHLYRSI 252 (262)
T ss_pred EEEEeCCHHHh-c--cHHHHHHHhhh
Confidence 99999999997 2 34566666544
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=361.00 Aligned_cols=220 Identities=31% Similarity=0.456 Sum_probs=181.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC---CCC--CccEEEECCEeCCCC--CH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF---YDP--NAGHVLLDNVDIKTL--QL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~---~~~--~~G~i~~~g~~~~~~--~~ 171 (987)
.++++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+ ++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4889999999974 3489999999999999999999999999999999997 455 589999999998654 34
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPE--A-TMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqkqR 246 (987)
..+++.++|++|++.+|+.|++||+.++... . ..+...+. ..+.++.+ +..+.+.....+.+||||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQR-----VEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHH-----HHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 5667789999999999988999999875321 1 11111111 11223322 1112344567788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999999998778999999999998855 89999999999999999999865
Q ss_pred h
Q 001980 326 K 326 (987)
Q Consensus 326 ~ 326 (987)
.
T Consensus 235 ~ 235 (250)
T PRK14245 235 N 235 (250)
T ss_pred C
Confidence 3
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=360.87 Aligned_cols=217 Identities=32% Similarity=0.506 Sum_probs=180.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CCH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT--LQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~--~~~ 171 (987)
.|+++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 4899999999974 3489999999999999999999999999999999999763 69999999999864 344
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCCC---CHH----HHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPEA---TMA----EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
..+++.++|++|++.+|+.|++||+.++.... ..+ ++.++++..++. +++.......+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALW-------DEVKDRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-------hhhHHHHhcCCCCCCHHHH
Confidence 56778899999999998899999998763211 111 122222222111 1222345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. +|++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998765 899999999999999999887
Q ss_pred HH
Q 001980 324 IA 325 (987)
Q Consensus 324 ~~ 325 (987)
..
T Consensus 233 ~~ 234 (250)
T PRK14240 233 FT 234 (250)
T ss_pred Hh
Confidence 54
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=354.54 Aligned_cols=206 Identities=32% Similarity=0.506 Sum_probs=171.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH---HHHhc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL---RWLRD 176 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~~ 176 (987)
++++|++++|++. .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999642 348999999999999999999999999999999999999999999999999877654 24667
Q ss_pred ceEEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 177 QIGLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
.++|++|++.+|+. |++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++|||||
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK-----RVPAALELV--GLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 89999999999875 999999875321 11111111 112233333 444445566679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEE
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQV 314 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i 314 (987)
+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999874 58999999999999876 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=370.97 Aligned_cols=200 Identities=27% Similarity=0.478 Sum_probs=173.9
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccc-cHH
Q 001980 760 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIF 838 (987)
Q Consensus 760 ~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~g-TIr 838 (987)
.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.. ....+|++++|+||++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 369999999999999999999999999999999999999999999999999976 345678999999999999875 999
Q ss_pred HHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q 001980 839 DNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 912 (987)
Q Consensus 839 eNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS 912 (987)
|||.+... ..+ ++++.++++..++.+.. +..+ .+||||||||++|||||+++|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-------DRPV----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------CCch----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99975321 112 23466677777765432 3333 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 913 ALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 913 ~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
+||+.+.+.+++.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999875 47899999999999875 899999999999999999998754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=361.91 Aligned_cols=222 Identities=23% Similarity=0.423 Sum_probs=185.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL-RDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~ 177 (987)
.++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999973 358999999999999999999999999999999999999999999999999987765443 456
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCCCC----------HHHH--HHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPEAT----------MAEV--EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~~~----------~~~~--~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
++|++|++.+++. |++||+.++..... .... ..........+.++.+ |+.......+.+||||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHH
Confidence 9999999999986 99999997531100 0000 0000111223445555 676777888899999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE 321 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 321 (987)
||++|||||+.+|++|||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+.+
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 999999999999999999999999999999999999998853 7899999999999865 8999999999999999988
Q ss_pred HHHH
Q 001980 322 ELIA 325 (987)
Q Consensus 322 ~l~~ 325 (987)
++..
T Consensus 240 ~~~~ 243 (255)
T PRK11300 240 EIRN 243 (255)
T ss_pred HHhh
Confidence 8754
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=362.37 Aligned_cols=222 Identities=28% Similarity=0.431 Sum_probs=183.3
Q ss_pred CccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--C
Q 001980 97 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--L 169 (987)
Q Consensus 97 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--~ 169 (987)
...|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 446999999999963 358999999999999999999999999999999999996 589999999999864 3
Q ss_pred CHHHHhcceEEEcCCCCCchhcHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHH
Q 001980 170 QLRWLRDQIGLVNQEPALFATTILENILYGKPE--A-TMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 170 ~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqk 244 (987)
+...+++.|+|++|++.+|+.|++||+.++... . ..+..... +.+.++.+ .++.++..+..+.+||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 169 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEI-----VETSLKQAALWDQVKDDLHKSALTLSGGQQ 169 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHH-----HHHHHHHcCCCchhhhhhcCCcccCCHHHH
Confidence 345667889999999999989999999875321 1 11111111 11122222 11223456778889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+++|+++||||||++||+.+++.+.+.|.++.++.|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNI 249 (267)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998855 899999999999999999988
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
...
T Consensus 250 ~~~ 252 (267)
T PRK14237 250 FTN 252 (267)
T ss_pred hcC
Confidence 653
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=355.54 Aligned_cols=212 Identities=28% Similarity=0.406 Sum_probs=174.8
Q ss_pred cEEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---H
Q 001980 99 NIEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW---L 174 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~-~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~ 174 (987)
.|+++|++++|++... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999974321 25899999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hcceEEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHH
Q 001980 175 -RDQIGLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250 (987)
Q Consensus 175 -~~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialA 250 (987)
++.++|++|++.+++. |++||+.++.. .....+.. ..+.+.++.+ |+.........+||||||||++||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSR-----NGAKALLEQL--GLGKRLDHLPAQLSGGEQQRVALA 158 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHH
Confidence 3579999999998875 99999986421 11111111 1122334443 444445566779999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCccccCCEEEEEeCCEEEEe
Q 001980 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRNVDTVAVIQQGQVVET 317 (987)
Q Consensus 251 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~ 317 (987)
|||+.+|+++||||||++||+.+++.+.+.|+++. + ++|+|++||+++.+..||++++|++|+++++
T Consensus 159 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999874 3 7899999999998888999999999999764
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=333.88 Aligned_cols=221 Identities=29% Similarity=0.486 Sum_probs=185.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH-Hhcc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS-LRLK 822 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~-lR~~ 822 (987)
-++++|++..|.. ..+|++|||++++||.++++||||+||||++++|+|+.+|.+|+|.++|.||...+++. .|..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 3789999999953 46999999999999999999999999999999999999999999999999999999887 5889
Q ss_pred cEEEcccccccc-ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 001980 823 IGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901 (987)
Q Consensus 823 i~~VpQdp~lF~-gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~ 901 (987)
|+||||...+|. -||.|||.+|.....+++-++ ..+++..+-+| -|.......+.+|||||+|-+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 999999999995 699999987632222111100 00111112223 233344566778999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcCC
Q 001980 902 PAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRP 972 (987)
Q Consensus 902 p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~~ 972 (987)
|++|+|||||.+|-|.--+.|.++|++..+ +-||+.|-++..... -+||.+||++|+|+..|+.++|.+++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 999999999999999999999999999874 569999999999765 57999999999999999999999764
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=363.79 Aligned_cols=220 Identities=33% Similarity=0.483 Sum_probs=182.7
Q ss_pred CccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--C
Q 001980 97 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT--L 169 (987)
Q Consensus 97 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~--~ 169 (987)
...++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999974 3489999999999999999999999999999999999884 89999999999864 3
Q ss_pred CHHHHhcceEEEcCCCCCchhcHHHHHhcCCCC--C-CHH----HHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChH
Q 001980 170 QLRWLRDQIGLVNQEPALFATTILENILYGKPE--A-TMA----EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG 242 (987)
Q Consensus 170 ~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~--~-~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgG 242 (987)
+...+++.++|++|++.+|+.|++||+.++... . ..+ ++.++++..++ ...+.+..+..+.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAAL-------WDEVKDRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCC-------ChhHHHHhhCCcccCCHH
Confidence 445678899999999999988999999875321 1 111 12222222211 111223567778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChH
Q 001980 243 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE 321 (987)
Q Consensus 243 qkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 321 (987)
||||++|||||+++|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999998778999999999998765 8999999999999999998
Q ss_pred HHHHh
Q 001980 322 ELIAK 326 (987)
Q Consensus 322 ~l~~~ 326 (987)
++...
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 87643
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=371.05 Aligned_cols=222 Identities=30% Similarity=0.440 Sum_probs=182.7
Q ss_pred cEEEEeEEEECCCCC-------CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH
Q 001980 99 NIEFKNVTFSYPSRP-------DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~-------~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~ 171 (987)
.|+++|++++|+... ...+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996321 2468999999999999999999999999999999999999999999999999988765
Q ss_pred H---HHhcceEEEcCCC--CCchh-cHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCCh
Q 001980 172 R---WLRDQIGLVNQEP--ALFAT-TILENILYGK---PEATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSG 241 (987)
Q Consensus 172 ~---~~~~~i~~v~Q~~--~l~~~-tv~eni~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSg 241 (987)
. .+|++|+||+|+| .+++. |+.+|+.... ......+.. ..+.+.++.+ |++ ......+.+|||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERR-----EKALAMMAKV--GLRPEHYDRYPHMFSG 157 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHHC--CCChHHhcCCCccCCH
Confidence 3 4677899999998 35554 9999886421 111111111 1122334443 443 234667789999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 242 GQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 242 GqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
|||||++|||||+.+|++||+||||++||+.++..+.+.|.++.+ |.|+|+|||+++.+.. ||+|++|.+|+|++.|
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999998853 8999999999999975 8999999999999999
Q ss_pred ChHHHHHhh
Q 001980 319 THEELIAKA 327 (987)
Q Consensus 319 ~~~~l~~~~ 327 (987)
+.++++++.
T Consensus 238 ~~~~~~~~p 246 (327)
T PRK11308 238 TKEQIFNNP 246 (327)
T ss_pred CHHHHhcCC
Confidence 999998753
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=355.52 Aligned_cols=201 Identities=29% Similarity=0.460 Sum_probs=165.4
Q ss_pred EEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 001980 102 FKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLV 181 (987)
Q Consensus 102 ~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 181 (987)
++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .++++++|+
T Consensus 2 ~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 2 VEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred cccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 6799999974 34899999999999999999999999999999999999999999999998764 356789999
Q ss_pred cCCCCC---chhcHHHHHhcCCCCC------CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 182 NQEPAL---FATTILENILYGKPEA------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 182 ~Q~~~l---~~~tv~eni~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
+|++.+ ++.|++||+.++.... ..++.. ..+.+.++.+ |++........+||||||||++||||
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~a 146 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADK-----AKVDEALERV--GLSELADRQIGELSGGQQQRVLLARA 146 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHH-----HHHHHHHHHc--CCHHHHhCCcccCCHHHHHHHHHHHH
Confidence 999876 4579999998764311 001111 1112333333 44444556677999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
|+.+|+++||||||++||+.+++.+.+.|.++. +++|+|++||+++++.. ||++++|++| +++.|
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 147 LVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999999999875 58999999999999865 8999999886 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=362.58 Aligned_cols=218 Identities=31% Similarity=0.473 Sum_probs=180.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CCH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--LQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 171 (987)
.|+++|++|+|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999974 358999999999999999999999999999999999997 489999999998854 334
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHHhCCCCC----cccccCCCCCCChHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPE--A-TMAEVEAAASAANAHSFITLLPNGY----STQVGERGVQLSGGQK 244 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~g~----~t~~~~~g~~LSgGqk 244 (987)
..+++.++|++|++.+|+.|++||+.++... . ..+...+. +.+.++.+ |+ .......+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQR-----VEESLKQA--AIWKETKDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHH-----HHHHHHHc--CCCcchHHHhccChhhCCHHHH
Confidence 5567789999999999989999999875321 1 11111111 11222222 22 1234667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767999999999998765 899999999999999999887
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
...
T Consensus 234 ~~~ 236 (251)
T PRK14251 234 FIA 236 (251)
T ss_pred HhC
Confidence 643
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=363.45 Aligned_cols=218 Identities=31% Similarity=0.502 Sum_probs=181.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC--CCHHHHhcc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT--LQLRWLRDQ 177 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~~~~ 177 (987)
++++|++++|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPDG--TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 6899999999632 348999999999999999999999999999999999999999999999999852 233456788
Q ss_pred eEEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 178 IGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 178 i~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
|+|++|+| .+++.|+.||+.++... ....+..+ .+.+.++.+ |+.......+.+||||||||++|||||
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK-----RVKEALKAV--GMEGFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999997 46788999999875321 11111111 112233333 454445566789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+.+|+++||||||++||+.++..+.+.|.++. .++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999885 48999999999999874 899999999999999999988653
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=361.89 Aligned_cols=221 Identities=29% Similarity=0.427 Sum_probs=183.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999974 35999999999999999999999999999999999999999999999999998888777777899
Q ss_pred EEcCCCCCc-hhcHHHHHhcCCCCC-CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 180 LVNQEPALF-ATTILENILYGKPEA-TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 180 ~v~Q~~~l~-~~tv~eni~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
|++|++.++ ..|++||+.++.... .............+.+.+..+ |+.......+..||||||||++|||||+.+|
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART--ELSHLADRDMSTLSGGERQRVHVARALAQEP 156 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999998654 569999998863210 000000000011123334444 4545566677899999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999885 47899999999999954 89999999999999999988754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=361.31 Aligned_cols=218 Identities=29% Similarity=0.447 Sum_probs=182.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CCH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--LQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 171 (987)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 5899999999974 358999999999999999999999999999999999986 489999999998853 345
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCCC--C---HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPEA--T---MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqR 246 (987)
..++++++|++|++.+|+.|++||+.++.... . .+++.++++.+++.+.+ .......+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEV-------KDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhH-------HHHhcCCcccCCHHHHHH
Confidence 66778899999999999889999998764211 1 11222233333332222 223466778999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEe---------CCEEEE
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQ---------QGQVVE 316 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~---------~G~i~~ 316 (987)
++|||||+++|++|||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999998767899999999998865 89999998 899999
Q ss_pred ecChHHHHHh
Q 001980 317 TGTHEELIAK 326 (987)
Q Consensus 317 ~g~~~~l~~~ 326 (987)
.|+.+++.+.
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 9999998653
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=364.77 Aligned_cols=214 Identities=30% Similarity=0.534 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+.+|.. +..+|+||||+|++||.+|++||||||||||+++|.|++.|++|+|.++|.|...- ...+|+++
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999962 23699999999999999999999999999999999999999999999999998765 67889999
Q ss_pred EEEcccccccc-ccHHHHhccCC-----C-CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGK-----E-GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~-----~-~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
||+||+|.++. -|++|||.+.. + ...++.+.+.++..++.+.- +.++ ..||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~~----~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NKKV----RTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Ccch----hhcCHHHHHHHHHHH
Confidence 99999999775 59999998642 1 12356788899999887621 2333 469999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-C-CeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR-G-RTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~-~-~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||+.+|++|||||||++||+.+...+++.|+++.+ + +||++.||.++.+.. ||+|++|++|+++.+|+++++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999875 4 799999999999987 899999999999999999998654
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=375.45 Aligned_cols=213 Identities=30% Similarity=0.481 Sum_probs=181.6
Q ss_pred eEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC----HHHHhcccE
Q 001980 749 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN----LKSLRLKIG 824 (987)
Q Consensus 749 ~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----l~~lR~~i~ 824 (987)
|++++|.+ .. + |+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++++
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 79999953 23 5 999999999999999999999999999999999999999999999986542 345688999
Q ss_pred EEccccccccc-cHHHHhccCCCCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKEGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
|+||++.+|.. |+++|+.++..... ++.+.+.++..++.++... ....||||||||++|||||+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGR-----------LPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHH
Confidence 99999999975 99999987643222 2235666777666554433 33579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCCchH
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAY 976 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~g~f 976 (987)
++|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+++..|
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCccc
Confidence 99999999999999999999999999998753 7899999999999865 89999999999999999999998766555
Q ss_pred H
Q 001980 977 S 977 (987)
Q Consensus 977 ~ 977 (987)
.
T Consensus 228 ~ 228 (354)
T TIGR02142 228 L 228 (354)
T ss_pred c
Confidence 3
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=363.11 Aligned_cols=220 Identities=25% Similarity=0.423 Sum_probs=182.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--CCH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--LQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--~~~ 171 (987)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999974 348999999999999999999999999999999999987 699999999999853 344
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCC--CCCHHH-HHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKP--EATMAE-VEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqkqR 246 (987)
..++++++|++|++.+|+.|++||+.++.. ....++ .... +.+.+..+ ..++.......+.+||||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qr 175 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEI-----VEKSLRGAAIWDELKDRLHDNAYGLSGGQQQR 175 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHH-----HHHHHHHcCCcchHHHHHhcCcccCCHHHHHH
Confidence 566788999999999998899999987532 111111 1111 11112211 1133345567788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
++|||||+.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 255 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFS 255 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999998778999999999999865 89999999999999999998865
Q ss_pred h
Q 001980 326 K 326 (987)
Q Consensus 326 ~ 326 (987)
.
T Consensus 256 ~ 256 (271)
T PRK14238 256 N 256 (271)
T ss_pred C
Confidence 3
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=360.05 Aligned_cols=220 Identities=26% Similarity=0.443 Sum_probs=181.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCC--CH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTL--QL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 171 (987)
.|+++|++|+|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999974 3489999999999999999999999999999999999763 489999999998765 44
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCCC---CHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPEA---TMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqkqR 246 (987)
...++.++|++|++.+|+.|++||+.++.... ......+. +.+.++.+ ..++.+..++.+.+||||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 157 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTI-----VEKSLKGAALWDEVKDRLHDSALSLSGGQQQR 157 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHH-----HHHHHHHhcCchhhHHHhhcChhhCCHHHHHH
Confidence 56677899999999999889999999863211 11111111 11112211 1223345677888999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
++|||||+.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++.+
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE 237 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHh
Confidence 99999999999999999999999999999999999988767999999999999865 89999999999999999988764
Q ss_pred h
Q 001980 326 K 326 (987)
Q Consensus 326 ~ 326 (987)
.
T Consensus 238 ~ 238 (253)
T PRK14261 238 N 238 (253)
T ss_pred C
Confidence 3
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=353.08 Aligned_cols=205 Identities=25% Similarity=0.481 Sum_probs=172.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++ .++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++.. .++++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999963 358999999999999999999999999999999999999999999999987753 4567899
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 180 LVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|++|++.+++. |++||+.+.... ....+.. ..+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 99999998875 999999874211 1111111 1223445554 666666777889999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998875 47899999999998865 8999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=352.97 Aligned_cols=208 Identities=27% Similarity=0.454 Sum_probs=172.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH---HHhc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WLRD 176 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~~ 176 (987)
|+++|++++|++ +..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 689999999942 23589999999999999999999999999999999999999999999999998776543 3677
Q ss_pred ceEEEcCCCCCc-hhcHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 177 QIGLVNQEPALF-ATTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 177 ~i~~v~Q~~~l~-~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
.++|++|+|.++ +.|++||+.++.. ....++..+.+ .+.++.+ |+.........+||||||||++|||||
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRV-----SAALDKV--GLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHH-----HHHHHHc--CChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 899999999875 5699999987531 11222221111 1223333 444445667789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEE
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVE 316 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~ 316 (987)
+.+|+++||||||++||+.+++.+.+.|.++. ++.|+|++||+++++.. ||+|++|++|+++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999875 47899999999999876 89999999999853
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=360.34 Aligned_cols=220 Identities=28% Similarity=0.433 Sum_probs=180.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CC---CccEEEECCEeCCCC--CH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY--DP---NAGHVLLDNVDIKTL--QL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~--~~---~~G~i~~~g~~~~~~--~~ 171 (987)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+. +| ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999974 34899999999999999999999999999999999985 46 599999999998643 34
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPE---ATMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQR 246 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqkqR 246 (987)
..+++.++|++|++.+|+.|++||+.++... ...+...+. +.+.++.+ ..++.+..+..+.+||||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEA-----VEKSLKGASIWDEVKDRLHDSALGLSGGQQQR 156 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHH-----HHHHHHHcCCchhHHHHHhcCcccCCHHHHHH
Confidence 4567789999999999999999999875211 111111111 11222222 1112234567788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999988667999999999998765 89999999999999999998865
Q ss_pred h
Q 001980 326 K 326 (987)
Q Consensus 326 ~ 326 (987)
.
T Consensus 237 ~ 237 (252)
T PRK14239 237 N 237 (252)
T ss_pred C
Confidence 4
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-41 Score=370.62 Aligned_cols=222 Identities=25% Similarity=0.356 Sum_probs=178.6
Q ss_pred cEEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC----CCccEEEECCEeCCCCCHHH
Q 001980 99 NIEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD----PNAGHVLLDNVDIKTLQLRW 173 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~-~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~----~~~G~i~~~g~~~~~~~~~~ 173 (987)
.++++|++++|+.... ..+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++..++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3799999999975322 458999999999999999999999999999999999998 48999999999998887655
Q ss_pred Hh----cceEEEcCCCC--Cchh-cHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHHhCCCCCc---ccccCCCCCCC
Q 001980 174 LR----DQIGLVNQEPA--LFAT-TILENILYGK---PEATMAEVEAAASAANAHSFITLLPNGYS---TQVGERGVQLS 240 (987)
Q Consensus 174 ~~----~~i~~v~Q~~~--l~~~-tv~eni~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---t~~~~~g~~LS 240 (987)
++ +.|+|++|+|. +.+. |+.+++.... .....++..+ .+.+.++.+ |+. ...+..+.+||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~-----~~~~~L~~~--gL~~~~~~l~~~p~~LS 155 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQ-----RAIDLLNQV--GIPDPASRLDVYPHQLS 155 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHC--CCCChHHHHhCCchhCC
Confidence 43 36999999984 4433 6666554221 0111111111 112333333 443 34567888999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEe
Q 001980 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVET 317 (987)
Q Consensus 241 gGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~ 317 (987)
||||||++|||||+.+|+++|+||||++||+.++..+.+.|+++. .|.|+|+|||+++.+.. ||+|++|.+|+|++.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999985 38999999999999865 899999999999999
Q ss_pred cChHHHHHhh
Q 001980 318 GTHEELIAKA 327 (987)
Q Consensus 318 g~~~~l~~~~ 327 (987)
|+.+++.++.
T Consensus 236 g~~~~~~~~p 245 (326)
T PRK11022 236 GKAHDIFRAP 245 (326)
T ss_pred CCHHHHhhCC
Confidence 9999998653
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=363.17 Aligned_cols=219 Identities=28% Similarity=0.479 Sum_probs=180.1
Q ss_pred CccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCC--C
Q 001980 97 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--L 169 (987)
Q Consensus 97 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~--~ 169 (987)
...|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 37 ~~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 37 ETVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 345999999999974 358999999999999999999999999999999999997 689999999999854 3
Q ss_pred CHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCC-CHHHHHHHHHHHhHHHHHHhCCCCC----cccccCCCCCCChHHH
Q 001980 170 QLRWLRDQIGLVNQEPALFATTILENILYGKPEA-TMAEVEAAASAANAHSFITLLPNGY----STQVGERGVQLSGGQK 244 (987)
Q Consensus 170 ~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~----~t~~~~~g~~LSgGqk 244 (987)
+...++++++|++|++.+|+.|++||+.++.... ......+ .+.+.++.+ |+ ...+++++.+||||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~i~~~~~~~~~~LSgGe~ 186 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDE-----RVEESLRRA--ALWDEVKDQLDSSGLDLSGGQQ 186 (285)
T ss_pred chHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHH-----HHHHHHHHc--CCCchhHHHHhCCcccCCHHHH
Confidence 4556778999999999999889999998752110 0011111 112223322 22 2345677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEE-EEeCCEEEEecChHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVA-VIQQGQVVETGTHEE 322 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~-~l~~G~i~~~g~~~~ 322 (987)
||++|||||+++|+||||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. |||++ +|++|++++.|++++
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~ 266 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDK 266 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998766899999999999876 89975 579999999999888
Q ss_pred HHH
Q 001980 323 LIA 325 (987)
Q Consensus 323 l~~ 325 (987)
+..
T Consensus 267 ~~~ 269 (285)
T PRK14254 267 IFE 269 (285)
T ss_pred HHh
Confidence 754
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=374.60 Aligned_cols=211 Identities=30% Similarity=0.480 Sum_probs=179.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----CHHHHh
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL----QLRWLR 175 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~----~~~~~~ 175 (987)
|++ |++++|++. .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +....+
T Consensus 2 l~~-~l~k~~~~~----~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGDL----CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCCE----EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 999999742 23 89999999999999999999999999999999999999999999988643 233456
Q ss_pred cceEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 176 DQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
++++|++|++.+|+. |++||+.++......+++. +.++.+ |+.........+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~---------~~l~~~--gl~~~~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFD---------KIVALL--GIEPLLDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHH---------HHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 789999999999975 9999999875422222232 233333 5555566777899999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++++.. ||+|++|++|++++.|+++++..+.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999999998753 7899999999998765 8999999999999999999987653
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=358.78 Aligned_cols=217 Identities=29% Similarity=0.474 Sum_probs=181.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCC-CCCHH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIK-TLQLR 172 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~-~~~~~ 172 (987)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999973 3489999999999999999999999999999999999986 5999999999885 34556
Q ss_pred HHhcceEEEcCCCCCchhcHHHHHhcCCCC--CC-HH----HHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 173 WLRDQIGLVNQEPALFATTILENILYGKPE--AT-MA----EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 173 ~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~--~~-~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
.+++.++|++|++.+|+.|++||+.++... .. .+ ++.++++..++ .+++.+.....+.+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAAL-------WDEVKDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCC-------chhhhHHhhcCcccCCHHHHH
Confidence 778889999999999989999999876321 11 11 11122222211 112224456677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
|++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998767999999999999876 8999999999999999988775
Q ss_pred H
Q 001980 325 A 325 (987)
Q Consensus 325 ~ 325 (987)
.
T Consensus 233 ~ 233 (249)
T PRK14253 233 S 233 (249)
T ss_pred c
Confidence 3
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=353.29 Aligned_cols=205 Identities=35% Similarity=0.561 Sum_probs=172.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC--CCHHHHhcc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT--LQLRWLRDQ 177 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~~~~ 177 (987)
++++|++++|++ .++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 468999999974 348999999999999999999999999999999999999999999999998853 344566788
Q ss_pred eEEEcCCCCCch-hcHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 178 IGLVNQEPALFA-TTILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 178 i~~v~Q~~~l~~-~tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
++|++|++.+++ .|++||+.++.. ....++..+ .+.+.++.+ |+...+.....+||||||||++|||||
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE-----RALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999986 599999987532 111111111 112344444 666666777889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEE
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQV 314 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i 314 (987)
+.+|+++||||||++||+.+++.+.+.|.++. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999885 47999999999999865 899999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=362.38 Aligned_cols=220 Identities=30% Similarity=0.490 Sum_probs=183.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCCC-HH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTLQ-LR 172 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~~-~~ 172 (987)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999974 3589999999999999999999999999999999999986 7999999999987653 34
Q ss_pred HHhcceEEEcCCCCCchhcHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHHHHH
Q 001980 173 WLRDQIGLVNQEPALFATTILENILYGKPE---ATMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQRI 247 (987)
Q Consensus 173 ~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqkqRi 247 (987)
.++.+++|++|++.+|+.|++||+.++... .+.++..... .+.++.+ ...+.+.+...+.+||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA-----QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 567889999999999999999999876321 1222222111 1222322 11222445677889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+|||||+.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999988667899999999998765 899999999999999999998654
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=370.57 Aligned_cols=223 Identities=26% Similarity=0.426 Sum_probs=181.1
Q ss_pred cEEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEeCCCCCHHHH
Q 001980 99 NIEFKNVTFSYPSR-PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN---AGHVLLDNVDIKTLQLRWL 174 (987)
Q Consensus 99 ~i~~~~~~~~y~~~-~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~ 174 (987)
.++++|++++|+.. ....+++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 58999999999642 2346899999999999999999999999999999999999996 9999999999988876654
Q ss_pred ---h-cceEEEcCCC--CCchh-cHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHHh--CCCCCcccccCCCCCCChH
Q 001980 175 ---R-DQIGLVNQEP--ALFAT-TILENILYGK---PEATMAEVEAAASAANAHSFITL--LPNGYSTQVGERGVQLSGG 242 (987)
Q Consensus 175 ---~-~~i~~v~Q~~--~l~~~-tv~eni~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~t~~~~~g~~LSgG 242 (987)
| ++|+||+|+| .+++. |+.+|+.... ...+.++..+. +.+.++. ++++. ..++..+.+||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~-----~~~~L~~vgL~~~~-~~~~~~p~~LSgG 165 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEE-----SVRMLDAVKMPEAR-KRMKMYPHEFSGG 165 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHcCCCChH-HHhcCCcccCCHH
Confidence 3 4799999998 45553 8888775321 11122221111 1122222 23222 3357788999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecC
Q 001980 243 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGT 319 (987)
Q Consensus 243 qkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 319 (987)
||||++|||||+.+|+++|+||||++||+.++..+.+.|+++.+ +.|+|+||||++.+.. ||+|++|.+|+|++.|+
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999998853 8999999999999875 89999999999999999
Q ss_pred hHHHHHhh
Q 001980 320 HEELIAKA 327 (987)
Q Consensus 320 ~~~l~~~~ 327 (987)
.+++.+..
T Consensus 246 ~~~i~~~p 253 (330)
T PRK09473 246 ARDVFYQP 253 (330)
T ss_pred HHHHHhCC
Confidence 99998753
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=349.49 Aligned_cols=201 Identities=30% Similarity=0.509 Sum_probs=168.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++++|++. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 4689999999742 1 39999999999999999999999999999999999999999999999876654 346799
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCC-CC-----HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 180 LVNQEPALFAT-TILENILYGKPE-AT-----MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
|++|++.+|+. |++||+.++... .. .+++.++ ++.+ |+.........+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVA---------LARV--GLAGLEKRLPGELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHH---------HHHc--CCHHHHhCCcccCCHHHHHHHHHHHH
Confidence 99999999976 999999876321 11 1122222 3333 44444555667999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
|+.+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999875 38999999999999866 8999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=358.20 Aligned_cols=218 Identities=31% Similarity=0.449 Sum_probs=181.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCC--CH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTL--QL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 171 (987)
.++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4899999999973 3489999999999999999999999999999999999875 799999999998643 33
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCCC---CHH----HHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPEA---TMA----EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
...++.++|++|++.+|+.|++||+.++.... ... ++.++++..++. .++.......+..||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALW-------DEVKDDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCc-------hhhhhHhhCCcccCCHHHH
Confidence 45677899999999999999999998753211 111 122222222211 1222345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988767999999999998766 899999999999999999988
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 643
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=369.19 Aligned_cols=204 Identities=24% Similarity=0.404 Sum_probs=172.7
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchh-cHH
Q 001980 115 VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TIL 193 (987)
Q Consensus 115 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~ 193 (987)
.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++++++|+||++.+++. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 358999999999999999999999999999999999999999999999999865 345567789999999999876 999
Q ss_pred HHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCh
Q 001980 194 ENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271 (987)
Q Consensus 194 eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~ 271 (987)
||+.+.... ....+..+ ...+.++.+ |+.........+||||||||++|||||+++|+++||||||++||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEE-----RAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred HHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 999874211 11111111 122344444 555556677789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 272 GSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 272 ~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+++.+++.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999999885 48999999999999876 899999999999999999988653
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=355.18 Aligned_cols=205 Identities=26% Similarity=0.436 Sum_probs=169.1
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC---CCCceEEECCccCCCCCHHHHh
Q 001980 745 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD---PTAGKVMIDGKDIRRLNLKSLR 820 (987)
Q Consensus 745 I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~l~~lR 820 (987)
+.|+||+|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 67999999997542 2569999999999999999999999999999999999999 99999999999875 34678
Q ss_pred cccEEEccccccccc-cHHHHhccCCC----CCCHHH-----HHH-HHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 821 LKIGLVQQEPALFAA-SIFDNIAYGKE----GATEAE-----VVE-AARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 821 ~~i~~VpQdp~lF~g-TIreNL~~~~~----~~sd~e-----i~~-al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
++++|+||++.+|.+ |++||+.++.. ....++ +.+ .++..++ +.........||||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~ 149 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLAL-----------TRIGGNLVKGISGGER 149 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcc-----------hhhhcccccCcCHHHH
Confidence 999999999999987 99999986421 111111 111 2222222 2222334567999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCc-hhh-hccCEEEEEeCCEEEEec
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRL-STI-RGVDCIGVVQDGRIVEQG 963 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl-~ti-~~~D~Iivl~~G~ive~G 963 (987)
||++|||||+++|++|||||||++||+.+...+.+.|++.. +++|+|++||++ +.+ ..||+|++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999875 478999999998 455 568999999999999875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=361.58 Aligned_cols=217 Identities=30% Similarity=0.506 Sum_probs=179.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCCCC--HH
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKTLQ--LR 172 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~~--~~ 172 (987)
-+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999963 358999999999999999999999999999999999986 47999999999886543 23
Q ss_pred HHhcceEEEcCCCCCchhcHHHHHhcCCC--CC--CHHHHHHHHHHHhHHHHHHhCCCCCc----ccccCCCCCCChHHH
Q 001980 173 WLRDQIGLVNQEPALFATTILENILYGKP--EA--TMAEVEAAASAANAHSFITLLPNGYS----TQVGERGVQLSGGQK 244 (987)
Q Consensus 173 ~~~~~i~~v~Q~~~l~~~tv~eni~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~g~~----t~~~~~g~~LSgGqk 244 (987)
.+++.++|++|++.+|+.|++||+.++.. .. ......+ ...+.++.+ |+. +.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDE-----IVEKSLTSV--GLWEELGDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHH-----HHHHHHHHc--CCCchhhhHhhcChhhCCHHHH
Confidence 56778999999999998899999987521 11 1111111 111223333 332 345667889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+++|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 899999999999999999887
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
.+.
T Consensus 236 ~~~ 238 (251)
T PRK14244 236 FKN 238 (251)
T ss_pred hcC
Confidence 643
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=357.90 Aligned_cols=219 Identities=29% Similarity=0.502 Sum_probs=180.4
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--C---CccEEEECCEeCCCC--C
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--P---NAGHVLLDNVDIKTL--Q 170 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--~---~~G~i~~~g~~~~~~--~ 170 (987)
+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 45899999999973 348999999999999999999999999999999999986 4 689999999998643 3
Q ss_pred HHHHhcceEEEcCCCCCchh-cHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhCCCCCc----ccccCCCCCCChH
Q 001980 171 LRWLRDQIGLVNQEPALFAT-TILENILYGKPE---ATMAEVEAAASAANAHSFITLLPNGYS----TQVGERGVQLSGG 242 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~----t~~~~~g~~LSgG 242 (987)
...+++.++|++|++.+|+. |++||+.++... ...++..+. ..+.++.+ |++ ...+..+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEI-----VESSLKRV--ALWDEVKDRLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHH-----HHHHHHHc--CCchhhhHHhhCCcCcCCHH
Confidence 45677889999999999875 999999875211 111111111 11222222 222 2345677899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChH
Q 001980 243 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE 321 (987)
Q Consensus 243 qkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 321 (987)
||||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777899999999999865 8999999999999999998
Q ss_pred HHHHh
Q 001980 322 ELIAK 326 (987)
Q Consensus 322 ~l~~~ 326 (987)
++...
T Consensus 233 ~~~~~ 237 (252)
T PRK14256 233 KIFTT 237 (252)
T ss_pred HHHhC
Confidence 87643
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=360.46 Aligned_cols=224 Identities=27% Similarity=0.436 Sum_probs=184.0
Q ss_pred cEEEEeEEEECCCC------CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH-
Q 001980 744 EIELRHVDFAYPSR------PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL- 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~------~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l- 816 (987)
.|+++||+++|+.. .+.++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++..++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38999999999631 02469999999999999999999999999999999999999999999999999988765
Q ss_pred --HHHhcccEEEccccc--cc-cccHHHHhccCCC---CCCH----HHHHHHHHHcCchhhHhhCCCcCCC-ccCCCCCC
Q 001980 817 --KSLRLKIGLVQQEPA--LF-AASIFDNIAYGKE---GATE----AEVVEAARAANVHGFVSALPNAYKT-PVGERGVQ 883 (987)
Q Consensus 817 --~~lR~~i~~VpQdp~--lF-~gTIreNL~~~~~---~~sd----~ei~~al~~a~l~~~i~~lp~gldt-~vge~G~~ 883 (987)
..+|+.++|+||++. ++ ..|+++|+.++.. ..+. +.+.+.++..+ +++ ........
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~~ 151 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVD-----------LDDSVLDKRPPQ 151 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcC-----------CChhHhhCCCcc
Confidence 347889999999983 33 4789999864211 1111 12334444433 332 23445568
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEE
Q 001980 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIV 960 (987)
Q Consensus 884 LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~iv 960 (987)
||||||||++|||||+++|+||||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|+++
T Consensus 152 LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~ 231 (268)
T PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV 231 (268)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEe
Confidence 999999999999999999999999999999999999999999998753 7899999999999975 8999999999999
Q ss_pred EecChhHHhcCCCchHHHH
Q 001980 961 EQGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 961 e~Gt~~eLl~~~~g~f~~l 979 (987)
+.|+++++... ++.|..-
T Consensus 232 ~~g~~~~~~~~-~~~~~~~ 249 (268)
T PRK10419 232 ETQPVGDKLTF-SSPAGRV 249 (268)
T ss_pred eeCChhhccCC-CCHHHHH
Confidence 99999999865 5555443
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=359.69 Aligned_cols=221 Identities=24% Similarity=0.377 Sum_probs=183.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC--------ccEEEECCEeCCCCCH
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN--------AGHVLLDNVDIKTLQL 171 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~--------~G~i~~~g~~~~~~~~ 171 (987)
|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999964 35899999999999999999999999999999999999998 9999999999987777
Q ss_pred HHHhcceEEEcCCCC-CchhcHHHHHhcCCCCC-CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 172 RWLRDQIGLVNQEPA-LFATTILENILYGKPEA-TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~-l~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
..+++.++|++|++. +++.|++||+.++.... ...............+.++.+ |+.+..+....+||||||||++|
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA--GATALVGRDVTTLSGGELARVQF 156 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHH
Confidence 777778999999986 46779999998763110 000000000011122334444 67777788889999999999999
Q ss_pred HHHhc---------cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEe
Q 001980 250 ARAML---------KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVET 317 (987)
Q Consensus 250 ARal~---------~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~ 317 (987)
||||+ .+|++|||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~ 236 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH 236 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence 99999 59999999999999999999999999998753 7999999999999864 899999999999999
Q ss_pred cChHHHHH
Q 001980 318 GTHEELIA 325 (987)
Q Consensus 318 g~~~~l~~ 325 (987)
|+.+++..
T Consensus 237 g~~~~~~~ 244 (272)
T PRK13547 237 GAPADVLT 244 (272)
T ss_pred cCHHHHcC
Confidence 99988754
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=357.59 Aligned_cols=202 Identities=30% Similarity=0.474 Sum_probs=172.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 789999999963 3599999999999999999999999999999999999999999999999998653 34689
Q ss_pred EEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|+||++.+|. .|+++|+.++.. ... ++++.++++..++.+.... ...+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHH
Confidence 9999999887 699999976421 112 2345666777766544332 335799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEe--CCEEEEecCh
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQ--DGRIVEQGSH 965 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~--~G~ive~Gt~ 965 (987)
|+++|++|||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|+ +|+|++.++.
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999999999999863 37999999999998865 89999998 5999998764
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=349.53 Aligned_cols=204 Identities=31% Similarity=0.472 Sum_probs=175.3
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH---HHh
Q 001980 745 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLR 820 (987)
Q Consensus 745 I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~---~lR 820 (987)
++++|++++|++.. ..++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|++||.++...+.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996421 14699999999999999999999999999999999999999999999999999877643 468
Q ss_pred cccEEEcccccccc-ccHHHHhccCCC---CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 821 LKIGLVQQEPALFA-ASIFDNIAYGKE---GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 821 ~~i~~VpQdp~lF~-gTIreNL~~~~~---~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
+.++|+||+|.+|. .|+.+|+.++.. ..+. +.+.++++..++.++....| .+||+|||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 89999999999987 799999986431 1222 24556666666655554433 47999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEE
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRI 959 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~D~Iivl~~G~i 959 (987)
+|||||+++|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999998763 7999999999998777999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=357.93 Aligned_cols=220 Identities=27% Similarity=0.399 Sum_probs=180.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEeCCCC-----C
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN---AGHVLLDNVDIKTL-----Q 170 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~-----~ 170 (987)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999974 35899999999999999999999999999999999999986 49999999988653 2
Q ss_pred HHHHhcceEEEcCCCCCchh-cHHHHHhcCCCCCCH--HH---HHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 171 LRWLRDQIGLVNQEPALFAT-TILENILYGKPEATM--AE---VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
...++++++|++|++.+|+. |++||+.++...... .. .........+.+.++.+ |+.......+.+||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV--GMVHFAHQRVSTLSGGQQ 158 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc--CCHHHHhCCccccCHHHH
Confidence 34567789999999998875 999999876321100 00 00000111223344444 555556677789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE 321 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 321 (987)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~ 238 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999885 37999999999998654 8999999999999999998
Q ss_pred HH
Q 001980 322 EL 323 (987)
Q Consensus 322 ~l 323 (987)
++
T Consensus 239 ~~ 240 (262)
T PRK09984 239 QF 240 (262)
T ss_pred Hh
Confidence 86
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=350.55 Aligned_cols=214 Identities=29% Similarity=0.462 Sum_probs=176.8
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|+.. ..|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +..++
T Consensus 2 l~~~~l~~~~~~~-----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHHL-----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECCc-----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 6899999999732 2489999999999999999999999999999999999999999999998765442 45799
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCCC-CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 180 LVNQEPALFAT-TILENILYGKPEA-TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
|++|++.++++ |+.||+.++.... ..... ....+.+.++.+ |++..+......||||||||++||||++++|
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p 148 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAA----QREKLHAIARQM--GIEDLLARLPGQLSGGQRQRVALARCLVREQ 148 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHH----HHHHHHHHHHHc--CcHHHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999999876 9999998753111 10000 011112233333 4544556666799999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+++||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 149 ~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 149 PILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999998743 7899999999999865 899999999999999999888654
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=361.46 Aligned_cols=221 Identities=29% Similarity=0.437 Sum_probs=180.3
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCCC--C
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKTL--Q 170 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~--~ 170 (987)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 45899999999974 348999999999999999999999999999999999864 4999999999988643 2
Q ss_pred HHHHhcceEEEcCCCCCchhcHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHHH
Q 001980 171 LRWLRDQIGLVNQEPALFATTILENILYGKPE--A-TMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqkq 245 (987)
...++++++|++|++.+|+.|++||+.++... . ......+.+ .+.++.+ ..++.......+..|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIV-----EKSLRKAALWDEVSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHH-----HHHHHHhCCccchhhHhhCChhhCCHHHHH
Confidence 34567789999999999988999999975321 1 111111111 1112222 011123446677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
|++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999999865 8999999999999999999886
Q ss_pred Hh
Q 001980 325 AK 326 (987)
Q Consensus 325 ~~ 326 (987)
+.
T Consensus 270 ~~ 271 (286)
T PRK14275 270 TN 271 (286)
T ss_pred hC
Confidence 53
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=359.10 Aligned_cols=220 Identities=30% Similarity=0.450 Sum_probs=179.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CCH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT--LQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~--~~~ 171 (987)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999974 3489999999999999999999999999999999999974 79999999998853 345
Q ss_pred HHHhcceEEEcCCCCCchh-cHHHHHhcCCCC---CCHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHHH
Q 001980 172 RWLRDQIGLVNQEPALFAT-TILENILYGKPE---ATMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqkq 245 (987)
..+++.++|++|++.+|+. |++||+.++... .......+. +.+.++.+ ..+........+.+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDEL-----VEKSLRGANLWNEVKDRLDKPGGGLSGGQQQ 155 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHH-----HHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence 5677889999999999875 999999865311 111111111 11222222 001123456677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEe------CCEEEEec
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQ------QGQVVETG 318 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~------~G~i~~~g 318 (987)
|++|||||+.+|+++||||||++||+.++..+.+.|.++.+++|+|++||+++.+.. ||+|++|+ +|+|++.|
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~ 235 (258)
T PRK14241 156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEID 235 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecC
Confidence 999999999999999999999999999999999999988767999999999998864 89999997 89999999
Q ss_pred ChHHHHHh
Q 001980 319 THEELIAK 326 (987)
Q Consensus 319 ~~~~l~~~ 326 (987)
+++++...
T Consensus 236 ~~~~~~~~ 243 (258)
T PRK14241 236 DTEKIFSN 243 (258)
T ss_pred CHHHHHhC
Confidence 99988653
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=356.82 Aligned_cols=218 Identities=29% Similarity=0.488 Sum_probs=180.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCCC--CH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTL--QL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~~--~~ 171 (987)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999973 3589999999999999999999999999999999999984 899999999988653 23
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCC---CCHHH----HHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPE---ATMAE----VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
..+++.++|++|++.+++.|++||+.++... ...+. +.++++..++.+ .++...+..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWD-------EVKSELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCc-------hhHHHHhCChhhcCHHHH
Confidence 4567789999999999989999999875311 11111 122222221111 112345677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+.+|+++||||||++||+.++..+.+.|.++.+++|+|++||+++.+.. +|++++|++|++++.|+.+++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999988778999999999997654 899999999999999999887
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14262 233 VER 235 (250)
T ss_pred HhC
Confidence 653
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=358.68 Aligned_cols=217 Identities=32% Similarity=0.457 Sum_probs=180.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CCH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT--LQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~--~~~ 171 (987)
.++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 5899999999974 3489999999999999999999999999999999999985 48999999998854 344
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCC---CCH----HHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPE---ATM----AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
..++.+|+|++|++.+|+.|++||+.++... ... +.+.++++..++.+. +.......+.+||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQE-------VKDKLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-------hhhHhcCCcccCCHHHH
Confidence 5677889999999999999999999875211 011 122223332222111 12234667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEe-----CCEEEEec
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQ-----QGQVVETG 318 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~-----~G~i~~~g 318 (987)
||++|||||+++|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999988777999999999999876 89999997 59999999
Q ss_pred ChHHHHH
Q 001980 319 THEELIA 325 (987)
Q Consensus 319 ~~~~l~~ 325 (987)
+++++.+
T Consensus 237 ~~~~~~~ 243 (259)
T PRK14260 237 VTTQIFS 243 (259)
T ss_pred CHHHHhc
Confidence 9998864
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=357.12 Aligned_cols=220 Identities=29% Similarity=0.448 Sum_probs=179.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-----ccEEEECCEeCCC--CCH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN-----AGHVLLDNVDIKT--LQL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~-----~G~i~~~g~~~~~--~~~ 171 (987)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4789999999973 35899999999999999999999999999999999999874 8999999999864 334
Q ss_pred HHHhcceEEEcCCCCCchh-cHHHHHhcCCCC--C-CHHHHHHHHHHHhHHHHHHhC--CCCCcccccCCCCCCChHHHH
Q 001980 172 RWLRDQIGLVNQEPALFAT-TILENILYGKPE--A-TMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~--~~g~~t~~~~~g~~LSgGqkq 245 (987)
..+++.++|++|++.+|+. |++||+.++... . ..++..+.+. +.+..+ ..++.......+.+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 155 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE-----RSLRGAALWDEVKDRLKTPATGLSGGQQQ 155 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHH-----HHHHHcCcchhhhhhhcCCcccCCHHHHH
Confidence 5667889999999999875 999999865321 1 1222222111 111111 111222335567789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
|++|||||+++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988768999999999999875 8999999999999999999886
Q ss_pred Hh
Q 001980 325 AK 326 (987)
Q Consensus 325 ~~ 326 (987)
..
T Consensus 236 ~~ 237 (252)
T PRK14272 236 TN 237 (252)
T ss_pred hC
Confidence 54
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=355.56 Aligned_cols=214 Identities=26% Similarity=0.353 Sum_probs=175.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCEeCCCCCHHHH-hc
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY--DPNAGHVLLDNVDIKTLQLRWL-RD 176 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~-~~ 176 (987)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 478999999973 35899999999999999999999999999999999994 7999999999999987776554 44
Q ss_pred ceEEEcCCCCCchh-cHHHHHhcCCCCC---------CHHHHHHHHHHHhHHHHHHhCCCCCcc-cccCCCC-CCChHHH
Q 001980 177 QIGLVNQEPALFAT-TILENILYGKPEA---------TMAEVEAAASAANAHSFITLLPNGYST-QVGERGV-QLSGGQK 244 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~-tv~eni~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~~~~g~-~LSgGqk 244 (987)
.++|++|++.++++ |++||+.+..... +..+.. ..+.+.++.+ |+.. ....... +||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-----KLLKAKLALL--GMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH-----HHHHHHHHHc--CCchhhcccccccCcCHHHH
Confidence 59999999999876 9999997642110 111111 1122334443 4442 2344444 5999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc--CCEEEEEeCCEEEEecChH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN--VDTVAVIQQGQVVETGTHE 321 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~--~d~i~~l~~G~i~~~g~~~ 321 (987)
||++|||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 99999999999999999999999999999999999999885 47999999999999875 7999999999999999887
Q ss_pred HH
Q 001980 322 EL 323 (987)
Q Consensus 322 ~l 323 (987)
++
T Consensus 231 ~~ 232 (243)
T TIGR01978 231 LA 232 (243)
T ss_pred Hh
Confidence 54
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=356.90 Aligned_cols=218 Identities=28% Similarity=0.433 Sum_probs=181.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe-----CCCCCHHH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD-----IKTLQLRW 173 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~-----~~~~~~~~ 173 (987)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999974 358999999999999999999999999999999999999999999999998 76665543
Q ss_pred ----HhcceEEEcCCCC--Cch-hcHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChH
Q 001980 174 ----LRDQIGLVNQEPA--LFA-TTILENILYGK---PEATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGG 242 (987)
Q Consensus 174 ----~~~~i~~v~Q~~~--l~~-~tv~eni~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgG 242 (987)
+++.++|++|++. ++. .|+.+|+.+.. ......+... ...+.++.+ |+. +..+..+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3567999999984 443 48899986421 0111112111 223455665 454 4677888999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecC
Q 001980 243 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGT 319 (987)
Q Consensus 243 qkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 319 (987)
||||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+ |.|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988753 7899999999999975 89999999999999999
Q ss_pred hHHHHHh
Q 001980 320 HEELIAK 326 (987)
Q Consensus 320 ~~~l~~~ 326 (987)
++++..+
T Consensus 236 ~~~~~~~ 242 (258)
T PRK11701 236 TDQVLDD 242 (258)
T ss_pred HHHHhcC
Confidence 9887643
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=353.01 Aligned_cols=224 Identities=25% Similarity=0.411 Sum_probs=182.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcc-----CCCCCHHH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD-----IRRLNLKS 818 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~d-----i~~i~l~~ 818 (987)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +..++...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999963 358999999999999999999999999999999999999999999999988 77766553
Q ss_pred ----HhcccEEEcccccc---ccccHHHHhccC-----CCC--CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCC
Q 001980 819 ----LRLKIGLVQQEPAL---FAASIFDNIAYG-----KEG--ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQL 884 (987)
Q Consensus 819 ----lR~~i~~VpQdp~l---F~gTIreNL~~~-----~~~--~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 884 (987)
+++.++|+||++.+ +..|+.+|+... ... ..++++.+.++..++.+ +........|
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----------~~~~~~~~~L 149 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP----------TRIDDLPRAF 149 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh----------hhhhcCchhc
Confidence 34679999999852 345888887431 111 11233344444444321 2334455689
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEE
Q 001980 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVE 961 (987)
Q Consensus 885 SgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive 961 (987)
|||||||++|||||+++|++|||||||++||+.+.+.+.+.|++.. .+.|+|+|||+++.+.. ||++++|++|++++
T Consensus 150 SgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~ 229 (253)
T TIGR02323 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE 229 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999864 37899999999999985 89999999999999
Q ss_pred ecChhHHhcCCCchHHHHH
Q 001980 962 QGSHSELVSRPDGAYSRLL 980 (987)
Q Consensus 962 ~Gt~~eLl~~~~g~f~~l~ 980 (987)
.|+++++..++...|.+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~ 248 (253)
T TIGR02323 230 SGLTDQVLDDPQHPYTQLL 248 (253)
T ss_pred ECCHHHHhcCCCCHHHHHH
Confidence 9999999876555565543
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=356.81 Aligned_cols=221 Identities=26% Similarity=0.437 Sum_probs=179.6
Q ss_pred cEEEEeEEEECCCC------CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH
Q 001980 99 NIEFKNVTFSYPSR------PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR 172 (987)
Q Consensus 99 ~i~~~~~~~~y~~~------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~ 172 (987)
.|+++|++++|+.. ...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 124589999999999999999999999999999999999999999999999998765555
Q ss_pred HHhcceEEEcCCCC--Cchh-cHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHH
Q 001980 173 WLRDQIGLVNQEPA--LFAT-TILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQ 245 (987)
Q Consensus 173 ~~~~~i~~v~Q~~~--l~~~-tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkq 245 (987)
..++.++|++|++. +++. |+.+|+.+... .....+..+ .+.+.++.+ |++ ........+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G~~q 156 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREK-----QIIETLRQV--GLLPDHASYYPHMLAPGQKQ 156 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHc--CCChHHHhcCchhcCHHHHH
Confidence 56678999999985 4444 99999875321 111111111 112233333 442 2234456789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEE 322 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 322 (987)
|++|||||+.+|+++||||||++||+.+++.+.+.|.++. .|+|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 157 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 236 (267)
T PRK15112 157 RLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTAD 236 (267)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 9999999999999999999999999999999999999885 38899999999999886 89999999999999999999
Q ss_pred HHHh
Q 001980 323 LIAK 326 (987)
Q Consensus 323 l~~~ 326 (987)
+...
T Consensus 237 ~~~~ 240 (267)
T PRK15112 237 VLAS 240 (267)
T ss_pred HhcC
Confidence 8764
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=357.02 Aligned_cols=219 Identities=32% Similarity=0.457 Sum_probs=181.3
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC--CC
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT--LQ 170 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~--~~ 170 (987)
..|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 36999999999974 3489999999999999999999999999999999999863 69999999998854 33
Q ss_pred HHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCC-----HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 171 LRWLRDQIGLVNQEPALFATTILENILYGKPEAT-----MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
...++++|+|++|++.+|+.|+.||+.++..... .+.+.++++.+++.+ ++.......+.+|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWE-------EVKDKLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccch-------hhHHHhcCCcccCCHHHHH
Confidence 4456788999999999998899999987632111 111222222222211 1223455677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEe---------CCEEE
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQ---------QGQVV 315 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~---------~G~i~ 315 (987)
|++|||||+.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||++++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 999999999999999999999999999999999999998777899999999998865 89999997 89999
Q ss_pred EecChHHHHHh
Q 001980 316 ETGTHEELIAK 326 (987)
Q Consensus 316 ~~g~~~~l~~~ 326 (987)
+.|+.+++...
T Consensus 249 ~~g~~~~~~~~ 259 (274)
T PRK14265 249 EFSPTEQMFGS 259 (274)
T ss_pred EeCCHHHHHhC
Confidence 99999998653
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=316.50 Aligned_cols=217 Identities=32% Similarity=0.541 Sum_probs=184.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC---------
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL--------- 169 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~--------- 169 (987)
.++++|+.++|+... +|++|||+.++|+.+.|+|.|||||||+|+||.=+-.|+.|+|.++|++++-.
T Consensus 6 ~l~v~dlHK~~G~~e---VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGEHE---VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcccch---hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 589999999998543 89999999999999999999999999999999999999999999999987421
Q ss_pred -C---HHHHhcceEEEcCCCCCchh-cHHHHHhcCCCC---CC-HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCC
Q 001980 170 -Q---LRWLRDQIGLVNQEPALFAT-TILENILYGKPE---AT-MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240 (987)
Q Consensus 170 -~---~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LS 240 (987)
+ .+.+|.+.++|+|+..|++- ||.||+.-+.-. .+ .+.++++ ..++... |+.......+..||
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~A------e~~L~kV--Gi~ek~~~YP~~LS 154 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERA------EKYLAKV--GIAEKADAYPAHLS 154 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHH------HHHHHHh--CchhhhhcCccccC
Confidence 2 34678899999999999965 999999753210 11 1222221 2233333 66666677788999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 241 gGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
|||+||+||||||..+|+++|+|||||+|||+-.-++.+.+.++. .|+|.++|||.+.+.+. ..+|+.+.+|.|-|+|
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G 234 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEG 234 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccC
Confidence 999999999999999999999999999999999999999999886 59999999999999998 5999999999999999
Q ss_pred ChHHHHHh
Q 001980 319 THEELIAK 326 (987)
Q Consensus 319 ~~~~l~~~ 326 (987)
++++++.+
T Consensus 235 ~P~qvf~n 242 (256)
T COG4598 235 PPEQVFGN 242 (256)
T ss_pred ChHHHhcC
Confidence 99999764
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=355.22 Aligned_cols=206 Identities=28% Similarity=0.429 Sum_probs=172.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 689999999974 3589999999999999999999999999999999999999999999999987642 23689
Q ss_pred EEcCCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 180 LVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 180 ~v~Q~~~l~~-~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|++|++.+++ .|++||+.++... ....+.. ..+.+.++.+ |+.......+.+||||||||++|||||+.+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRL-----EIAHQMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999887 4999999875321 1111111 1123344444 555556677889999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEe--CCEEEEecCh
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQ--QGQVVETGTH 320 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~--~G~i~~~g~~ 320 (987)
|++|||||||++||+.+++.+.+.|.++. .|+|+|++||+++.+.. ||+|++|+ +|++++.++.
T Consensus 147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999999873 38999999999998865 89999998 5999988754
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=351.74 Aligned_cols=214 Identities=33% Similarity=0.495 Sum_probs=180.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++ .++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 478999999974 348999999999999999999999999999999999999999999999999876543 356899
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 180 LVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|+||+|.+|++ |++||+.++... ....... ..+.+.++.+ |+.........+|||||+||++|||||+++
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIK-----ARVEELLELV--QLEGLGDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 999999876431 1111111 1223445554 444445566779999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|+++||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+.+++.+
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 999999999999999999999999998753 7999999999998766 89999999999999999988764
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=345.69 Aligned_cols=202 Identities=33% Similarity=0.502 Sum_probs=169.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|+. .++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+ .+++.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999962 468999999999999999999999999999999999999999999999986543 3567899
Q ss_pred EEcCCCCCchh-cHHHHHhcCC-CCC--C---HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 180 LVNQEPALFAT-TILENILYGK-PEA--T---MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~-~~~--~---~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
|++|+|.+|.. |++||+.++. +.. . .+++.+++ +.+ |+.........+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l---------~~~--~l~~~~~~~~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAA---------QQV--GIADYLDRLPEQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHH---------HHc--CcHHHhhCCcccCCHHHHHHHHHHHH
Confidence 99999999875 9999998642 111 1 11222233 333 44444555667999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecC
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGT 319 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 319 (987)
|+.+|+++||||||++||+.+++.+.+.|.++. .+.|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999999875 37899999999998765 89999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=313.61 Aligned_cols=195 Identities=32% Similarity=0.501 Sum_probs=167.4
Q ss_pred CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHH
Q 001980 114 DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTIL 193 (987)
Q Consensus 114 ~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~ 193 (987)
+.++|+++||++.+||+++|+||||||||||+|.++-+.+|++|++++.|++++.++++.+|++|+||.|.|.||.+||+
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHH
Q 001980 194 ENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 273 (987)
Q Consensus 194 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~ 273 (987)
||+.|...-. ..+.... ...+++..+. -.++.+..+..+||||||||+||+|-|.--|+|||||||||+||+.+
T Consensus 95 DNlifP~~~r-~rr~dr~----aa~~llar~~-l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~n 168 (223)
T COG4619 95 DNLIFPWQIR-NRRPDRA----AALDLLARFA-LPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN 168 (223)
T ss_pred hccccchHHh-ccCCChH----HHHHHHHHcC-CchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhh
Confidence 9999863200 0001111 1123344331 12356778888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh--CCCeEEEEcCCCCc-cccCCEEEEEeCCEE
Q 001980 274 ESIVQEALDRLM--VGRTTVVVAHRLST-IRNVDTVAVIQQGQV 314 (987)
Q Consensus 274 ~~~i~~~l~~~~--~~~tvi~vtH~~~~-~~~~d~i~~l~~G~i 314 (987)
++.|.+.|.++- ++..+++|||+.+. ++.+|+++-+..|++
T Consensus 169 kr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 169 KRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred HHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 999999998874 47899999999998 778999999999876
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=348.37 Aligned_cols=205 Identities=27% Similarity=0.457 Sum_probs=178.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
++++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 478999999963 36999999999999999999999999999999999999999999999999876422 35799
Q ss_pred EEcccccccc-ccHHHHhccCC--CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 001980 825 LVQQEPALFA-ASIFDNIAYGK--EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901 (987)
Q Consensus 825 ~VpQdp~lF~-gTIreNL~~~~--~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~ 901 (987)
|+||++.+|. .|+++|+.++. ....++++.++++..++.+.... ....||||||||++||||++++
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-----------KAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-----------hHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 69999997532 12346678888888888765433 2346999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhH
Q 001980 902 PAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 902 p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~e 967 (987)
|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|++.+
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999875 4789999999999985 589999999999999999875
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=367.19 Aligned_cols=227 Identities=24% Similarity=0.376 Sum_probs=182.4
Q ss_pred cEEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC----CCccEEEECCEeCCCCCHHH
Q 001980 99 NIEFKNVTFSYPSR-PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD----PNAGHVLLDNVDIKTLQLRW 173 (987)
Q Consensus 99 ~i~~~~~~~~y~~~-~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~----~~~G~i~~~g~~~~~~~~~~ 173 (987)
.|+++|++++|+.. ....+|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++..++...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 37899999999632 13458999999999999999999999999999999999986 58999999999998877654
Q ss_pred H----hcceEEEcCCCC--Cch-hcHHHHHhcCCC---C-----CCHHHHHHHHHHHhHHHHHHhCCCCCc---ccccCC
Q 001980 174 L----RDQIGLVNQEPA--LFA-TTILENILYGKP---E-----ATMAEVEAAASAANAHSFITLLPNGYS---TQVGER 235 (987)
Q Consensus 174 ~----~~~i~~v~Q~~~--l~~-~tv~eni~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~---t~~~~~ 235 (987)
+ ++.|+||+|+|. +.+ .||.+|+..... . ....+.. ..+.+.++.+ |+. ......
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~~~--gL~~~~~~~~~~ 155 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRK-----RRAIELLHRV--GIKDHKDAMRSF 155 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHH-----HHHHHHHHHC--CCCChHHHHhCC
Confidence 3 247999999996 344 399999864210 0 0001111 1122344444 443 234667
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCC
Q 001980 236 GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQG 312 (987)
Q Consensus 236 g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G 312 (987)
+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 789999999999999999999999999999999999999999999998853 8999999999999965 8999999999
Q ss_pred EEEEecChHHHHHhh-hhHHH
Q 001980 313 QVVETGTHEELIAKA-GAYAS 332 (987)
Q Consensus 313 ~i~~~g~~~~l~~~~-~~~~~ 332 (987)
+|++.|+.+++.+.. ..|.+
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHH
Confidence 999999999987653 33443
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=332.78 Aligned_cols=171 Identities=56% Similarity=0.918 Sum_probs=161.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|++++|++. ..++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++...+...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999643 225899999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 001980 825 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 904 (987)
Q Consensus 825 ~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~I 904 (987)
|+||++.+|+.|++||+ ||+|||||++||||++++|++
T Consensus 80 ~~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 80 YVPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred EEcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCE
Q 001980 905 LLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGR 958 (987)
Q Consensus 905 LlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ 958 (987)
|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||++++|++|+
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999998877899999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=357.28 Aligned_cols=218 Identities=29% Similarity=0.471 Sum_probs=181.9
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-----CccEEEECCEeCCC----
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT---- 168 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-----~~G~i~~~g~~~~~---- 168 (987)
+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 15 ~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 15 QKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred ceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 45999999999974 3589999999999999999999999999999999999875 79999999987742
Q ss_pred CCHHHHhcceEEEcCCCCCchhcHHHHHhcCCC--CCC-----HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCCh
Q 001980 169 LQLRWLRDQIGLVNQEPALFATTILENILYGKP--EAT-----MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSG 241 (987)
Q Consensus 169 ~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSg 241 (987)
.+...+++.++|++|++.+|+.|++||+.++.. ... .+++..+++.+++. .++.+..++.+.+|||
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~ 164 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALW-------DEVKDRLGDLAFNLSG 164 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCc-------hhhhHHHhCCcccCCH
Confidence 334567788999999999998899999987531 111 12222222222211 1333456677889999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecCh
Q 001980 242 GQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTH 320 (987)
Q Consensus 242 GqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~ 320 (987)
|||||++|||||+++|+++||||||++||+.+++.+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|+.
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~ 244 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988767899999999999865 899999999999999999
Q ss_pred HHHHH
Q 001980 321 EELIA 325 (987)
Q Consensus 321 ~~l~~ 325 (987)
+++..
T Consensus 245 ~~~~~ 249 (265)
T PRK14252 245 DTIFI 249 (265)
T ss_pred HHHHh
Confidence 88764
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=341.44 Aligned_cols=191 Identities=20% Similarity=0.360 Sum_probs=163.1
Q ss_pred cEEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC---CCCceEEECCccCCCCCHHHH
Q 001980 744 EIELRHVDFAYPSR-PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD---PTAGKVMIDGKDIRRLNLKSL 819 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~-~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~l~~l 819 (987)
.+.++||+|.|+.. .+.++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 47899999999753 34579999999999999999999999999999999999999 89999999999998765 457
Q ss_pred hcccEEEcccccccc-ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHH
Q 001980 820 RLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 898 (987)
Q Consensus 820 R~~i~~VpQdp~lF~-gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAl 898 (987)
|++++|+||++.+|. .|+++||.++.. . . .+ +....||+|||||++|||||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~------~----~--------------~~----~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR------C----K--------------GN----EFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh------h----c--------------cc----cchhhCCHHHHHHHHHHHHH
Confidence 889999999998886 599999975421 0 0 22 23346999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEe-cCchhh-hccCEEEEEeCCEEEEec
Q 001980 899 LKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVA-HRLSTI-RGVDCIGVVQDGRIVEQG 963 (987)
Q Consensus 899 lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~Ia-HRl~ti-~~~D~Iivl~~G~ive~G 963 (987)
+++|++|||||||++||+++.+.+.+.|++..+ ++|+|+++ |+++.+ ..||+|++|++|++++.|
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998754 56766665 455665 558999999999999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=333.74 Aligned_cols=170 Identities=35% Similarity=0.649 Sum_probs=157.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
++++|++++|++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 478999999963 35999999999999999999999999999999999999999999999999998766 67789999
Q ss_pred EEccccccccc-cHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCC
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA 903 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ 903 (987)
|+||++.+|.+ |+++|+. ||||||||++|||||+++|+
T Consensus 77 ~~~q~~~~~~~~tv~~~~~-----------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred EEecCCccccCCcHHHHhh-----------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99999998886 9999983 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEE
Q 001980 904 ILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRI 959 (987)
Q Consensus 904 ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~i 959 (987)
+|||||||++||+.+...+.+.|++.. ++.|+|++||+.+.+. .||+|++|++|++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999875 4689999999999887 5899999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=349.93 Aligned_cols=214 Identities=24% Similarity=0.391 Sum_probs=171.8
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC---CCccEEEECCEeCCCCCHHHHh
Q 001980 100 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD---PNAGHVLLDNVDIKTLQLRWLR 175 (987)
Q Consensus 100 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~ 175 (987)
+.++|++++|++.+ ..++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 67899999997542 3569999999999999999999999999999999999999 99999999999875 24567
Q ss_pred cceEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHH-HHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 176 DQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHS-FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
+.++|++|++.+|+. |++||+.++...................+ .+..+ ++.....+...+||||||||++|||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 789999999999987 99999987522110000000000001111 23322 444445667789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCC-cc-ccCCEEEEEeCCEEEEec
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLS-TI-RNVDTVAVIQQGQVVETG 318 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~i~~l~~G~i~~~g 318 (987)
+++|+++||||||++||+.++..+.+.+.++. +++|+|++||++. .+ ..||++++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998875 4789999999983 55 458999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=369.64 Aligned_cols=211 Identities=32% Similarity=0.489 Sum_probs=178.5
Q ss_pred eEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHHHhcceE
Q 001980 104 NVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ----LRWLRDQIG 179 (987)
Q Consensus 104 ~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~~~~i~ 179 (987)
|++++|++. .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....+++++
T Consensus 4 ~l~~~~~~~----~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDF----SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCE----EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 899999632 24 999999999999999999999999999999999999999999999986532 234567899
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 180 LVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
|++|++.+|+. |++||+.++.......+. ...+.+.++.+ |++......+.+||||||||++|||||+.+|+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~-----~~~~~~~l~~~--gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSER-----RISFERVIELL--GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHH-----HHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999976 999999987432211111 11123344444 66667778888999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 259 ILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC
Confidence 9999999999999999999999998753 7999999999998865 899999999999999999998764
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=344.74 Aligned_cols=228 Identities=30% Similarity=0.518 Sum_probs=186.8
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-C----CCceEEECCccCCCCCHHH
Q 001980 745 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-P----TAGKVMIDGKDIRRLNLKS 818 (987)
Q Consensus 745 I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-p----~~G~I~idG~di~~i~l~~ 818 (987)
++++|++..|.... ...+++||||+|++||.+||||.|||||||+.++++|+.+ | .+|+|.++|.|+-+++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999996532 2469999999999999999999999999999999999998 4 5799999999999999876
Q ss_pred Hh----cccEEEccccc-cccc--cHHH----HhccCCCCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCC
Q 001980 819 LR----LKIGLVQQEPA-LFAA--SIFD----NIAYGKEGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ 883 (987)
Q Consensus 819 lR----~~i~~VpQdp~-lF~g--TIre----NL~~~~~~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~ 883 (987)
+| +.|++|||||. -|+- ||.+ -+..-....+ .+...+.++.+++.+--.. +..-...
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~--------~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERR--------LKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHH--------HhhCCcc
Confidence 43 47999999985 2332 3333 3322111001 3357788888888753111 1122357
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEE
Q 001980 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIV 960 (987)
Q Consensus 884 LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~iv 960 (987)
||||||||+.||-||+.+|++||.||||+|||..++++|.+.|++..+ +.|+|+|||++..+.. ||||+||.+|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999999998874 8999999999998865 8999999999999
Q ss_pred EecChhHHhcCCCchHHHHH
Q 001980 961 EQGSHSELVSRPDGAYSRLL 980 (987)
Q Consensus 961 e~Gt~~eLl~~~~g~f~~l~ 980 (987)
|.|+.++++.+|.-.|.+..
T Consensus 234 E~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred EeCCHHHHhcCCCChHHHHH
Confidence 99999999999988887654
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=354.15 Aligned_cols=218 Identities=29% Similarity=0.522 Sum_probs=181.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-----CCccEEEECCEeCCCC--CH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKTL--QL 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-----~~~G~i~~~g~~~~~~--~~ 171 (987)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++... +.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999973 358999999999999999999999999999999999864 4899999999998653 34
Q ss_pred HHHhcceEEEcCCCCCchhcHHHHHhcCCCC--C-CHH----HHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 172 RWLRDQIGLVNQEPALFATTILENILYGKPE--A-TMA----EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 172 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~--~-~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
..++++++|+||++++|+.|++||+.++... . ..+ ++.+.++.+++.+.+ ....++.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEV-------KDKLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhH-------HHHHhCCcccCCHHHH
Confidence 5677889999999999989999999875321 1 111 223333333332222 1234567789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
||++|||||+++|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. +|++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998876 799999999999999999988
Q ss_pred HHh
Q 001980 324 IAK 326 (987)
Q Consensus 324 ~~~ 326 (987)
...
T Consensus 233 ~~~ 235 (250)
T PRK14266 233 FIN 235 (250)
T ss_pred HhC
Confidence 543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 987 | ||||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-101 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-101 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-168 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 5e-96 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 3e-83 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-82 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 4e-65 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-64 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-61 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 4e-61 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-55 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 4e-55 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 4e-55 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 6e-55 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 9e-55 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 9e-55 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 5e-54 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 6e-54 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 6e-54 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 9e-53 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-49 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-45 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-43 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-43 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-42 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-40 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-25 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 5e-25 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 6e-25 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 5e-24 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-21 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 3e-18 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 3e-18 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 5e-18 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-17 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-17 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-17 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 2e-17 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 2e-17 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-17 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 5e-17 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 5e-17 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 6e-17 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 7e-17 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 2e-16 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-16 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-16 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-16 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 3e-16 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 3e-16 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 3e-16 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 8e-16 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 1e-15 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-15 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-15 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-15 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-15 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-15 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-15 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 5e-15 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 8e-15 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 8e-15 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-14 | ||
| 1g29_1 | 372 | Malk Length = 372 | 1e-14 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-14 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 2e-14 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 2e-13 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 1e-12 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-12 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 1e-11 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 5e-11 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-09 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 3e-08 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 3e-08 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-07 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 4e-08 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 9e-08 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 4e-08 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-07 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 5e-08 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 6e-08 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 9e-08 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 1e-07 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 1e-07 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 2e-07 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 1e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 1e-06 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 2e-06 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 6e-05 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 3e-04 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 7e-05 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 3e-04 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-04 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 2e-04 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 3e-04 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 2e-04 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 3e-04 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 2e-04 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 3e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 2e-04 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 4e-04 | ||
| 3uwx_A | 972 | Crystal Structure Of Uvra-Uvrb Complex Length = 972 | 4e-04 | ||
| 2r6f_A | 972 | Crystal Structure Of Bacillus Stearothermophilus Uv | 4e-04 | ||
| 2vf7_A | 842 | Crystal Structure Of Uvra2 From Deinococcus Radiodu | 6e-04 | ||
| 3ux8_A | 670 | Crystal Structure Of Uvra Length = 670 | 7e-04 |
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex Length = 972 | Back alignment and structure |
|
| >pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra Length = 972 | Back alignment and structure |
|
| >pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842 | Back alignment and structure |
|
| >pdb|3UX8|A Chain A, Crystal Structure Of Uvra Length = 670 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 1350 bits (3496), Expect = 0.0
Identities = 397/986 (40%), Positives = 602/986 (61%), Gaps = 7/986 (0%)
Query: 1 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 60
+ + +G + + S+AL FWY + + G+ T FS ++G S+GQ+ N+
Sbjct: 289 ITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNI 348
Query: 61 GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRD 120
AF+ + A Y++ +II KPSI +G D + GN+EFKN+ FSYPSR +V I +
Sbjct: 349 EAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKG 408
Query: 121 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180
++ +G+TVA+VG SG GKST V L++R YDP G V +D DI+T+ +R+LR+ IG+
Sbjct: 409 LNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGV 468
Query: 181 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 240
V+QEP LFATTI ENI YG+ + TM E+E A ANA+ FI LP+ + T VGERG QLS
Sbjct: 469 VSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLS 528
Query: 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300
GGQKQRIAIARA+++NPKILLLDEATSALD SE++VQ ALD+ GRTT+V+AHRLST+
Sbjct: 529 GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTV 588
Query: 301 RNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSH 360
RN D +A G +VE G H+EL+ + G Y L+ Q + N + +S
Sbjct: 589 RNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEA---CKSKDEID 645
Query: 361 SLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWP 420
+L S S +R S S + + + P F R+LKLN+ EWP
Sbjct: 646 NLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWP 705
Query: 421 YSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFV-FIYIGAGLYAVVA 479
Y ++G ++++G + P F+++ + ++ VF P +R+ +++ G+ + +
Sbjct: 706 YFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFIT 765
Query: 480 YLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAI 539
+ +Q + F GE LT R+R M+ ++LR +V WFD+ ++ + + RLA DAA VK A
Sbjct: 766 FFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGAT 825
Query: 540 ADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKA 599
R++VI QN+ +L T I++ I W+++LL+L P++ +A + L G A K
Sbjct: 826 GSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKE 885
Query: 600 HAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFAL 659
+ IA E + N RTV + + K +++ L++P ++++ GI F +Q +
Sbjct: 886 LEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMM 945
Query: 660 HASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVF 719
+ S A +G +LV + + TF V+ VF +V A +V + S AP+ + S +
Sbjct: 946 YFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHII 1005
Query: 720 STLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALV 779
++++ ID + G ++ V F YP+RP + V + +L ++ GQ+ ALV
Sbjct: 1006 RIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALV 1065
Query: 780 GASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 839
G+SG GKS+V+ L+ERFYDP AG V +DGK+I++LN++ LR ++G+V QEP LF SI +
Sbjct: 1066 GSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAE 1125
Query: 840 NIAYGKEG--ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897
NIAYG + E+V AA+ AN+H F+ +LP+ Y T VG++G QLSGGQKQRIAIARA
Sbjct: 1126 NIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185
Query: 898 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDG 957
+++ P ILLLDEATSALD ESE V+QEAL++ GRT +++AHRLSTI+ D I V+Q+G
Sbjct: 1186 LVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNG 1245
Query: 958 RIVEQGSHSELVSRPDGAYSRLLQLQ 983
++ E G+H +L+++ G Y ++ +Q
Sbjct: 1246 KVKEHGTHQQLLAQ-KGIYFSMVSVQ 1270
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 672 bits (1737), Expect = 0.0
Identities = 216/612 (35%), Positives = 331/612 (54%), Gaps = 21/612 (3%)
Query: 390 EMVSNAETDRKNPAPDGYFLRLLKL-NAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIE 448
+M ++ ++K P L + + + Y ++G + +++ G P ++ M +
Sbjct: 17 KMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTD 76
Query: 449 VF-----------------YYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMG 491
F A +E + + + Y G G ++ IQ F+ +
Sbjct: 77 SFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAA 136
Query: 492 ENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMT 551
++R+ AI+ E+GWFD H+ + RL D + + I D+I + Q M
Sbjct: 137 GRQIHKIRQKFFHAIMNQEIGWFDV--HDVGELNTRLTDDVSKINEGIGDKIGMFFQAMA 194
Query: 552 SLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGV 611
+ FI+ F W+++L+IL P+L L+ L F A+AK +A E +
Sbjct: 195 TFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVL 254
Query: 612 SNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGV 671
+ IRTV AF Q K L + + L + +++++TA I G + ++AS AL WYG
Sbjct: 255 AAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGT 314
Query: 672 HLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPD 731
LV + +V+ VF +++ A SV + + VF +D ID
Sbjct: 315 SLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSF 374
Query: 732 DPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIA 791
+ I+G +E +++ F+YPSR +V + K NL++++GQ+ ALVG SG GKS+ +
Sbjct: 375 SKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQ 434
Query: 792 LIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEA 851
L++R YDP G V IDG+DIR +N++ LR IG+V QEP LFA +I +NI YG+E T
Sbjct: 435 LMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMD 494
Query: 852 EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT 911
E+ +A + AN + F+ LP+ + T VGERG QLSGGQKQRIAIARA+++NP ILLLDEAT
Sbjct: 495 EIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT 554
Query: 912 SALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971
SALD ESE V+Q AL++ GRTT+++AHRLST+R D I G IVEQG+H EL+
Sbjct: 555 SALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE 614
Query: 972 PDGAYSRLLQLQ 983
G Y +L+ Q
Sbjct: 615 -KGIYFKLVMTQ 625
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 528 bits (1362), Expect = e-169
Identities = 151/341 (44%), Positives = 213/341 (62%), Gaps = 2/341 (0%)
Query: 4 GLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAF 63
G+ T + S+A F + + + + + G M++GQ S +
Sbjct: 935 GITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDY 994
Query: 64 SKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSI 123
+K + ++ II++ P I T G + + GN++F V F+YP+RP + + + S+
Sbjct: 995 AKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSL 1054
Query: 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQ 183
G+T+A+VG SG GKSTVV L+ERFYDP AG V LD +IK L ++WLR Q+G+V+Q
Sbjct: 1055 EVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQ 1114
Query: 184 EPALFATTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSG 241
EP LF +I ENI YG + E+ AA AN H FI LP+ Y+T+VG++G QLSG
Sbjct: 1115 EPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSG 1174
Query: 242 GQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIR 301
GQKQRIAIARA+++ P ILLLDEATSALD SE +VQEALD+ GRT +V+AHRLSTI+
Sbjct: 1175 GQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQ 1234
Query: 302 NVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRN 342
N D + VIQ G+V E GTH++L+A+ G Y S++ Q +
Sbjct: 1235 NADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGAKR 1275
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 503 bits (1297), Expect = e-168
Identities = 172/589 (29%), Positives = 303/589 (51%), Gaps = 13/589 (2%)
Query: 397 TDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMI-EVFYYRNP 455
+ K+ + F RL AP I+ I +L+ ++ ++ + F +
Sbjct: 2 HNDKDLSTWQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDR 61
Query: 456 ASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD 515
+ + + + I G + I Y S + + +RR + ++ V +FD
Sbjct: 62 SVLLWMPLVVIGLMILRG----ITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFD 117
Query: 516 EEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTY 575
+ ++ + +R+ D+ V S+ + + +++ S++ FI+ F W++S++++
Sbjct: 118 K--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLA 175
Query: 576 PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELR 635
P++ +A + + + + + A + + + V F Q F
Sbjct: 176 PIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSN 235
Query: 636 VPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTA 695
+ Q ++ + I I Q + A +L+ T + VF ++
Sbjct: 236 KMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALM 295
Query: 696 NSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYP 755
+ ++ + RG + ++F+ LD + + D+ ++ G++E R+V F YP
Sbjct: 296 RPLKSLTNVNAQFQRGMAACQTLFAILD--SEQEKDEG-KRVIDRATGDLEFRNVTFTYP 352
Query: 756 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 815
R +V ++ NL+I AG++ ALVG SGSGKS++ +LI RFYD G +++DG D+R
Sbjct: 353 GR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT 411
Query: 816 LKSLRLKIGLVQQEPALFAASIFDNIAYGK-EGATEAEVVEAARAANVHGFVSALPNAYK 874
L SLR ++ LV Q LF ++ +NIAY + E + ++ EAAR A F++ + N
Sbjct: 412 LASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLD 471
Query: 875 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRT 934
T +GE GV LSGGQ+QRIAIARA+L++ IL+LDEATSALD ESE +Q AL+ L + RT
Sbjct: 472 TIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRT 531
Query: 935 TVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
++++AHRLSTI D I VV+DG IVE+G+HSEL+++ G Y++L ++Q
Sbjct: 532 SLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHKMQ 579
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 427 bits (1101), Expect = e-139
Identities = 146/327 (44%), Positives = 201/327 (61%), Gaps = 7/327 (2%)
Query: 13 IACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL-GAFSKGKAAGY 71
IA ++ A V + A G T +FS+++ M +S +N+ F +G AA
Sbjct: 258 IASLALAFVLYAASFPSVMDSLTAG-TITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQ 316
Query: 72 KLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTV 131
L I+ + R +D G++EF+NVTF+YP R +V R+ ++ PAGKTV
Sbjct: 317 TLFAILDSEQEK---DEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTV 372
Query: 132 AVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATT 191
A+VG SGSGKST+ SLI RFYD + GH+L+D D++ L LR+Q+ LV+Q LF T
Sbjct: 373 ALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDT 432
Query: 192 ILENILYGKPEA-TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250
+ NI Y + E + ++E AA A A FI + NG T +GE GV LSGGQ+QRIAIA
Sbjct: 433 VANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 492
Query: 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQ 310
RA+L++ IL+LDEATSALD SE +Q ALD L RT++V+AHRLSTI D + V++
Sbjct: 493 RALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVE 552
Query: 311 QGQVVETGTHEELIAKAGAYASLIRFQ 337
G +VE GTH EL+A+ G YA L + Q
Sbjct: 553 DGIIVERGTHSELLAQHGVYAQLHKMQ 579
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 483 bits (1245), Expect = e-165
Identities = 99/258 (38%), Positives = 149/258 (57%), Gaps = 4/258 (1%)
Query: 86 DPTN-GRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTV 144
P + + G ++F++V+F+YP+ P+V + + + GK A+VG +GSGKSTV
Sbjct: 2 SPLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
Query: 145 VSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPE-A 203
+L++ Y P G VLLD + +L Q+ V QEP LF + ENI YG
Sbjct: 62 AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTP 121
Query: 204 TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLD 263
TM E+ A A + AH FI+ P GY T+VGE G QLSGGQ+Q +A+ARA+++ P++L+LD
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD 181
Query: 264 EATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHE 321
ATSALDAG++ VQ L RT +++ +LS + +++G V E GTH
Sbjct: 182 NATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHL 241
Query: 322 ELIAKAGAYASLIRFQEM 339
+L+ + G Y S++
Sbjct: 242 QLMERGGCYRSMVEALAA 259
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 456 bits (1176), Expect = e-154
Identities = 97/259 (37%), Positives = 148/259 (57%), Gaps = 5/259 (1%)
Query: 728 IDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKS 787
+ P P ++G ++ + V FAYP+ P+V V + + G+ ALVG +GSGKS
Sbjct: 1 MSPLSGSLAP-LNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKS 59
Query: 788 SVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK-E 846
+V AL++ Y PT GKV++DG+ + + + L ++ V QEP LF S +NIAYG
Sbjct: 60 TVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR 119
Query: 847 GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILL 906
T E+ A + H F+S P Y T VGE G QLSGGQ+Q +A+ARA+++ P +L+
Sbjct: 120 TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179
Query: 907 LDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGS 964
LD ATSALDA ++ +Q L RT +L+ +LS I +++G + EQG+
Sbjct: 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239
Query: 965 HSELVSRPDGAYSRLLQLQ 983
H +L+ R G Y +++
Sbjct: 240 HLQLMER-GGCYRSMVEAL 257
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 491 bits (1267), Expect = e-163
Identities = 157/589 (26%), Positives = 277/589 (47%), Gaps = 13/589 (2%)
Query: 397 TDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMI-EVFYYRNP 455
+ + + F RL ++ I V++ ++ ++ E F
Sbjct: 2 SLHSDESNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAES 61
Query: 456 ASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD 515
+ + + G ++ Y S + N+ ++RR + + V +FD
Sbjct: 62 NFLRILPFMILGLMFVRG----LSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFD 117
Query: 516 EEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTY 575
+ ++ + +R+ D+ V A + + I++ S++ + F W++SL+++
Sbjct: 118 Q--ESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVA 175
Query: 576 PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELR 635
P++ A + + + A + A + + + V ++ Q F
Sbjct: 176 PVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSN 235
Query: 636 VPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTA 695
+ QT++ I + Q + +L+ + T VF +
Sbjct: 236 SMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLM 295
Query: 696 NSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYP 755
+ S+ E RG + ++F +D T D E + GE++++ V F Y
Sbjct: 296 RPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG---KYEAERVNGEVDVKDVTFTYQ 352
Query: 756 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 815
+ + + I G++ ALVG SGSGKS++ L RFYD +G + +DG D+R
Sbjct: 353 GK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK 411
Query: 816 LKSLRLKIGLVQQEPALFAASIFDNIAYGKEG-ATEAEVVEAARAANVHGFVSALPNAYK 874
L +LR LV Q LF +I +NIAY EG T ++ +AAR A+ F+ +P
Sbjct: 412 LTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLD 471
Query: 875 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRT 934
T +GE G LSGGQ+QR+AIARA+L++ +L+LDEATSALD ESE +Q AL+ L + +T
Sbjct: 472 TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKT 531
Query: 935 TVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
+++AHRLSTI D I VV +G I+E+G H++L+++ DGAY++L ++Q
Sbjct: 532 VLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ-DGAYAQLHRIQ 579
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 424 bits (1092), Expect = e-137
Identities = 133/327 (40%), Positives = 191/327 (58%), Gaps = 7/327 (2%)
Query: 13 IACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGA-FSKGKAAGY 71
IA ++ V + A V G FT +FSA+ G M ++ +++ + F +G AA
Sbjct: 258 IASLALFAVLFLASVDSIRAELTPG-TFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQ 316
Query: 72 KLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTV 131
L ++ + + VNG ++ K+VTF+Y + + S P GKTV
Sbjct: 317 TLFGLMDLETER---DNGKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTV 372
Query: 132 AVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATT 191
A+VG SGSGKST+ +L RFYD ++G + LD D++ +L LR LV+Q LF T
Sbjct: 373 ALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDT 432
Query: 192 ILENILYG-KPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250
I NI Y + E T ++E AA A+A FI +P G T +GE G LSGGQ+QR+AIA
Sbjct: 433 IANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIA 492
Query: 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQ 310
RA+L++ +L+LDEATSALD SE +Q ALD L +T +V+AHRLSTI D + V+
Sbjct: 493 RALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVD 552
Query: 311 QGQVVETGTHEELIAKAGAYASLIRFQ 337
+G+++E G H +L+A+ GAYA L R Q
Sbjct: 553 EGEIIERGRHADLLAQDGAYAQLHRIQ 579
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 486 bits (1253), Expect = e-161
Identities = 178/582 (30%), Positives = 286/582 (49%), Gaps = 11/582 (1%)
Query: 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVF 467
R L+ P I ++ I +++ I+ + + + K
Sbjct: 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTI 61
Query: 468 IYIGA--GLYAV--VAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSL 523
A V I+ Y + +R+ + + ++ +
Sbjct: 62 AIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQ 119
Query: 524 VAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANF 583
V +R+ D K I + I + +++ + + F ++ +++L L +P +L +
Sbjct: 120 VISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY 179
Query: 584 AQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLR 643
L+ + ++A A+ E V I V +F ++ F + ++ L+
Sbjct: 180 VFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239
Query: 644 RSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVT-ANSVAETV 702
+ F +++ G +L G T + FV + + V
Sbjct: 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLA-AFVGYLELLFGPLRRLV 298
Query: 703 SLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVV 762
+ + + S+ VF +D I + A+P+E +G I++ HV F Y + +
Sbjct: 299 ASFTTLTQSFASMDRVFQLIDEDYDI-KNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPI 356
Query: 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822
KD NL I G++ A VG SG GKS++I LI RFYD T+G+++IDG +I+ SLR +
Sbjct: 357 LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416
Query: 823 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGV 882
IGLVQQ+ LF+ ++ +NI G+ AT+ EVVEAA+ AN H F+ LP Y T VGERGV
Sbjct: 417 IGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGV 476
Query: 883 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRL 942
+LSGGQKQR++IAR L NP IL+LDEATSALD ESE ++QEAL+ L + RTT++VAHRL
Sbjct: 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRL 536
Query: 943 STIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH 984
STI D I V+++G IVE G+H EL+++ GAY L +Q+
Sbjct: 537 STITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYSIQN 577
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 422 bits (1088), Expect = e-137
Identities = 146/331 (44%), Positives = 196/331 (59%), Gaps = 10/331 (3%)
Query: 13 IACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFS----KGKA 68
+ + +V +G G A + L L A + A
Sbjct: 254 VTDIGPIIVIGVGAYLAISGSITVG-TLAAFVGYL---ELLFGPLRRLVASFTTLTQSFA 309
Query: 69 AGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAG 128
+ ++ ++I + I ++ + ++ G I+ +V+F Y I+ +D ++ G
Sbjct: 310 SMDRVFQLIDEDYDI-KNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPIL-KDINLSIEKG 367
Query: 129 KTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALF 188
+TVA VG SG GKST+++LI RFYD +G +L+D +IK LR+QIGLV Q+ LF
Sbjct: 368 ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF 427
Query: 189 ATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIA 248
+ T+ ENIL G+P AT EV AA ANAH FI LP GY T+VGERGV+LSGGQKQR++
Sbjct: 428 SDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLS 487
Query: 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAV 308
IAR L NP IL+LDEATSALD SESI+QEALD L RTT++VAHRLSTI + D + V
Sbjct: 488 IARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVV 547
Query: 309 IQQGQVVETGTHEELIAKAGAYASLIRFQEM 339
I+ G +VETGTH ELIAK GAY L Q +
Sbjct: 548 IENGHIVETGTHRELIAKQGAYEHLYSIQNL 578
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 448 bits (1156), Expect = e-152
Identities = 106/244 (43%), Positives = 158/244 (64%), Gaps = 2/244 (0%)
Query: 95 EVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP 154
+ +I F+N+ F Y VI + ++ G+ + +VG SGSGKST+ LI+RFY P
Sbjct: 3 HHHHDITFRNIRFRYKPDSPVI-LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 61
Query: 155 NAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASA 214
G VL+D D+ WLR Q+G+V Q+ L +I++NI P ++ +V AA
Sbjct: 62 ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL 121
Query: 215 ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274
A AH FI+ L GY+T VGE+G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD SE
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181
Query: 275 SIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA-GAYASL 333
++ + ++ GRT +++AHRLST++N D + V+++G++VE G H+EL+++ Y+ L
Sbjct: 182 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Query: 334 IRFQ 337
+ Q
Sbjct: 242 YQLQ 245
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 438 bits (1129), Expect = e-148
Identities = 113/243 (46%), Positives = 158/243 (65%), Gaps = 1/243 (0%)
Query: 741 IRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT 800
+I R++ F Y V+ + NL I+ G+ +VG SGSGKS++ LI+RFY P
Sbjct: 4 HHHDITFRNIRFRYKPDSPVI-LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE 62
Query: 801 AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAA 860
G+V+IDG D+ + LR ++G+V Q+ L SI DNI+ G + +V+ AA+ A
Sbjct: 63 NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLA 122
Query: 861 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 920
H F+S L Y T VGE+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE
Sbjct: 123 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182
Query: 921 VLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 980
V+ + ++ +GRT +++AHRLST++ D I V++ G+IVEQG H EL+S P+ YS L
Sbjct: 183 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242
Query: 981 QLQ 983
QLQ
Sbjct: 243 QLQ 245
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 432 bits (1113), Expect = e-145
Identities = 111/239 (46%), Positives = 156/239 (65%), Gaps = 3/239 (1%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+ ++V F+Y + RD S +A G SG GKST+ SL+ERFY P AG +
Sbjct: 2 LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG-KPEATMAEVEAAASAANAH 218
+D I + L R QIG V+Q+ A+ A TI EN+ YG + + T ++ A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 278
SF+ +P+ +T+VGERGV++SGGQ+QR+AIARA L+NPKIL+LDEAT++LD+ SES+VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 279 EALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 337
+ALD LM GRTT+V+AHRLSTI + D + I++GQ+ +G H EL+A YA + Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 416 bits (1071), Expect = e-139
Identities = 107/240 (44%), Positives = 160/240 (66%), Gaps = 4/240 (1%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+ RHVDFAY + +D + + A G SG GKS++ +L+ERFY PTAG++
Sbjct: 2 LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEG-ATEAEVVEAARAANVH 863
IDG+ I ++L++ R +IG V Q+ A+ A +I +N+ YG EG T+ ++ + A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 864 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 923
FV +P+ T VGERGV++SGGQ+QR+AIARA L+NP IL+LDEAT++LD+ESE ++Q
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 924 EALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
+AL+ LM+GRTT+++AHRLSTI D I ++ G+I G H+ELV+ Y++ + Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 415 bits (1070), Expect = e-139
Identities = 104/254 (40%), Positives = 161/254 (63%), Gaps = 1/254 (0%)
Query: 84 IQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKST 143
++ + + NIEF +V FSYP + + + + F P+G T A+VG +GSGKST
Sbjct: 2 LESFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKST 61
Query: 144 VVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEA 203
+ L+ RFYD G + + ++ +R IG+V Q+ LF TI NILYGK +A
Sbjct: 62 IAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDA 120
Query: 204 TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLD 263
T EV A +A + FI LP + T VG +G++LSGG++QRIAIAR +LK+PKI++ D
Sbjct: 121 TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFD 180
Query: 264 EATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323
EATS+LD+ +E + Q+A++ L RT +++AHRLSTI + +++ ++ +G++VE GTH++L
Sbjct: 181 EATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDL 240
Query: 324 IAKAGAYASLIRFQ 337
+ G YA + Q
Sbjct: 241 LKLNGEYAEMWNMQ 254
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 401 bits (1034), Expect = e-134
Identities = 104/253 (41%), Positives = 164/253 (64%), Gaps = 2/253 (0%)
Query: 731 DDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVI 790
+ IE V+F+YP + + K N I +G + ALVG +GSGKS++
Sbjct: 4 SFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA 63
Query: 791 ALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATE 850
L+ RFYD G + I GK++ + N S+R IG+V Q+ LF +I NI YGK AT+
Sbjct: 64 KLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATD 122
Query: 851 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 910
EV++A ++A ++ F+ ALP + T VG +G++LSGG++QRIAIAR +LK+P I++ DEA
Sbjct: 123 EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEA 182
Query: 911 TSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 970
TS+LD+++E + Q+A+E L + RT +++AHRLSTI + I ++ G+IVE+G+H +L+
Sbjct: 183 TSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK 242
Query: 971 RPDGAYSRLLQLQ 983
+G Y+ + +Q
Sbjct: 243 L-NGEYAEMWNMQ 254
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 395 bits (1017), Expect = e-130
Identities = 127/294 (43%), Positives = 177/294 (60%), Gaps = 12/294 (4%)
Query: 53 LGQSFSNLGAFS-------KGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNV 105
+G S + S + +++K++ + +D L G IEF+NV
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMFIDMENMFDLLKEETEV-KDLPGAGPLRFQKGRIEFENV 59
Query: 106 TFSY-PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV 164
FSY R +D S G+T+A+VG SG+GKST++ L+ RFYD ++G + +D
Sbjct: 60 HFSYADGRE---TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQ 116
Query: 165 DIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLL 224
DI + LR IG+V Q+ LF TI +NI YG+ A EVEAAA AA H I
Sbjct: 117 DISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAF 176
Query: 225 PNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL 284
P GY TQVGERG++LSGG+KQR+AIAR +LK P I+LLDEATSALD +E +Q +L ++
Sbjct: 177 PEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKV 236
Query: 285 MVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQE 338
RTT+VVAHRLST+ N D + VI+ G +VE G HE L+++ G YA + + Q+
Sbjct: 237 CANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQ 290
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 391 bits (1008), Expect = e-129
Identities = 125/279 (44%), Positives = 176/279 (63%), Gaps = 6/279 (2%)
Query: 708 IIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAY-PSRPDVVVFKDF 766
+ ++F L T + D P A P+ +G IE +V F+Y R +D
Sbjct: 18 GSHMFIDMENMFDLLKEETEV-KDLPGAGPLRFQKGRIEFENVHFSYADGRE---TLQDV 73
Query: 767 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 826
+ + GQ+ ALVG SG+GKS+++ L+ RFYD ++G + IDG+DI ++ SLR IG+V
Sbjct: 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVV 133
Query: 827 QQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 886
Q+ LF +I DNI YG+ A EV AA+AA +H + A P Y+T VGERG++LSG
Sbjct: 134 PQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSG 193
Query: 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR 946
G+KQR+AIAR +LK P I+LLDEATSALD +E +Q +L ++ RTT++VAHRLST+
Sbjct: 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVV 253
Query: 947 GVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHH 985
D I V++DG IVE+G H L+SR G Y+ + QLQ
Sbjct: 254 NADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQG 291
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 396 bits (1020), Expect = e-127
Identities = 177/587 (30%), Positives = 286/587 (48%), Gaps = 32/587 (5%)
Query: 408 FLRLLKLNAPEWPY---SIMGAIGSVLSGFIGPTFAIVMACMI-EVFYYRNPASMERKTK 463
RLL P + S + G + P ++ I VF R + R
Sbjct: 25 LRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSP---YLIGKTIDVVFVPRRFDLLPRYML 81
Query: 464 EFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSL 523
IY L + +Q + +++ R+R+ + + R VG+FD H +
Sbjct: 82 ILGTIYALTSL----LFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDII 137
Query: 524 VAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPL-LVLAN 582
R+ D ++ + + + I + +L + I+ F V +SL+ L PL +++
Sbjct: 138 S--RVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQ 195
Query: 583 FAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTL 642
+ K F + +I E +S + + F + K + F +++L
Sbjct: 196 IVSSQTRKYFYENQRVLGQLNGIIE-EDISGLTVIKLFTREEKEMEKFDR-----VNESL 249
Query: 643 RRSLT-----AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANS 697
R+ T +G+L + + ALI +G L K + T I F+
Sbjct: 250 RKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVG-TIATFIGYSRQFTR 308
Query: 698 -VAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPS 756
+ E + I S +F LD + DDPDA + +RGEIE ++V F+Y
Sbjct: 309 PLNELSNQFNMIQMALASAERIFEILD--LEEEKDDPDAVELREVRGEIEFKNVWFSY-- 364
Query: 757 RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL 816
V KD I+ GQ ALVG +GSGK++++ L+ RFYD G++++DG DIR++
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKR 424
Query: 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTP 876
SLR IG+V Q+ LF+ ++ +N+ YG GAT+ E+ EAA+ + F+ LP Y+T
Sbjct: 425 SSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETV 484
Query: 877 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTV 936
+ + G LS GQ+Q +AI RA L NP IL+LDEATS +D ++E +Q A+ +LM G+T++
Sbjct: 485 LTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSI 544
Query: 937 LVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
++AHRL+TI+ D I V++DG IVE G H EL+ + G Y L Q
Sbjct: 545 IIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYELFTSQ 590
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 358 bits (922), Expect = e-112
Identities = 125/331 (37%), Positives = 191/331 (57%), Gaps = 22/331 (6%)
Query: 16 MSWALVFWYAGVFIRNGVTDGG---------KAFTAIFSAIVGGMSLGQSFSNLGAFSKG 66
+ +AL+ + G + G + FT + + ++ Q
Sbjct: 273 LGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQM---------A 323
Query: 67 KAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFP 126
A+ ++ EI+ + +D + L EV G IEFKNV FSY + +D +
Sbjct: 324 LASAERIFEILDLEE--EKDDPDAVELREVRGEIEFKNVWFSY--DKKKPVLKDITFHIK 379
Query: 127 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPA 186
G+ VA+VG +GSGK+T+V+L+ RFYD + G +L+D +DI+ ++ LR IG+V Q+
Sbjct: 380 PGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTI 439
Query: 187 LFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQR 246
LF+TT+ EN+ YG P AT E++ AA ++ FI LP GY T + + G LS GQ+Q
Sbjct: 440 LFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQL 499
Query: 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTV 306
+AI RA L NPKIL+LDEATS +D +E +Q A+ +LM G+T++++AHRL+TI+N D +
Sbjct: 500 LAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLI 559
Query: 307 AVIQQGQVVETGTHEELIAKAGAYASLIRFQ 337
V++ G++VE G H+ELI K G Y L Q
Sbjct: 560 IVLRDGEIVEMGKHDELIQKRGFYYELFTSQ 590
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 325 bits (835), Expect = e-100
Identities = 132/510 (25%), Positives = 238/510 (46%), Gaps = 26/510 (5%)
Query: 470 IGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHN----SSLVA 525
+ L V + F S +N +RR + +L F N SSL+
Sbjct: 70 LIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLS-----FSISNVNRFHTSSLIT 124
Query: 526 ARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANF-- 583
RL D +++ + + ++++ + ++A + ++S +++ P +VL
Sbjct: 125 -RLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWL 183
Query: 584 ---AQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQ 640
L K ++ + + + E + +R V AF + F +
Sbjct: 184 TKKGNPLFRKIQ-----ESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRS 238
Query: 641 TLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAE 700
+ + F ++ +LW+G LV ++ L+ S+
Sbjct: 239 IISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMM 298
Query: 701 TVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYP--SRP 758
++ I+R S V L+ I+ + +A + + G + +V+F Y + P
Sbjct: 299 IGNILNFIVRASASAKRVLEVLNEKPAIE-EADNALALPNVEGSVSFENVEFRYFENTDP 357
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 818
V N ++ G A++G +GSGKS+++ LI R DP G+V +D D+R + LK
Sbjct: 358 ---VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKD 414
Query: 819 LRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVG 878
LR I V QE LF+ +I +N+ +G+E AT+ E+VEAA+ A +H F+ +LP Y + V
Sbjct: 415 LRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVE 474
Query: 879 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLV 938
G SGGQKQR++IARA++K P +L+LD+ TS++D +E + + L+R +G TT ++
Sbjct: 475 RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFII 534
Query: 939 AHRLSTIRGVDCIGVVQDGRIVEQGSHSEL 968
++ T D I V+ +G++ G+H EL
Sbjct: 535 TQKIPTALLADKILVLHEGKVAGFGTHKEL 564
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 311 bits (799), Expect = 7e-95
Identities = 116/327 (35%), Positives = 183/327 (55%), Gaps = 18/327 (5%)
Query: 19 ALVFWYAGVFIRNGVTDGGK--AFT-----AIFSAIVGGMSLGQSFSNLGAFSKGKAAGY 71
V W+ GV +RN + G A+T +FS ++ G L + A+
Sbjct: 262 IAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNF-------IVRASASAK 314
Query: 72 KLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYP-SRPDVIIFRDFSIFFPAGKT 130
+++E++ +KP+I ++ N L V G++ F+NV F Y + V+ + G
Sbjct: 315 RVLEVLNEKPAI-EEADNALALPNVEGSVSFENVEFRYFENTDPVL--SGVNFSVKPGSL 371
Query: 131 VAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT 190
VAV+G +GSGKST+++LI R DP G V +D +D++T++L+ LR I V QE LF+
Sbjct: 372 VAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG 431
Query: 191 TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250
TI EN+ +G+ +AT E+ AA A H FI LP GY ++V G SGGQKQR++IA
Sbjct: 432 TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIA 491
Query: 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQ 310
RA++K PK+L+LD+ TS++D +E + + L R G TT ++ ++ T D + V+
Sbjct: 492 RALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLH 551
Query: 311 QGQVVETGTHEELIAKAGAYASLIRFQ 337
+G+V GTH+EL+ Y + Q
Sbjct: 552 EGKVAGFGTHKELLEHCKPYREIYESQ 578
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 198 bits (504), Expect = 6e-56
Identities = 54/254 (21%), Positives = 114/254 (44%), Gaps = 7/254 (2%)
Query: 731 DDPDAEPVET--IRGEIELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKS 787
++ + + G++ ++ + Y + ++ + I GQ L+G +GSGKS
Sbjct: 4 ENSHVKKDDIWPSGGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKS 61
Query: 788 SVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEG 847
++++ R + G++ IDG + L+ R G++ Q+ +F+ + N+
Sbjct: 62 TLLSAFLRLLNT-EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAA- 119
Query: 848 ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLL 907
++ E+ + A + + P + + G LS G KQ + +AR+VL ILLL
Sbjct: 120 HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLL 179
Query: 908 DEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 967
DE ++ LD + +++ L++ T +L R+ + D V+++ ++ + S E
Sbjct: 180 DEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILE 239
Query: 968 LVSRPDGAYSRLLQ 981
L P +
Sbjct: 240 LYHYPADRFVAGFI 253
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 193 bits (492), Expect = 2e-54
Identities = 66/276 (23%), Positives = 114/276 (41%), Gaps = 10/276 (3%)
Query: 97 NGNIEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 155
G + K++T Y I + S G+ V ++G +GSGKST++S R +
Sbjct: 17 GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT- 73
Query: 156 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAA 215
G + +D V ++ L R G++ Q+ +F+ T +N L + E+ A
Sbjct: 74 EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN-LDPNAAHSDQEIWKVADEV 132
Query: 216 NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 275
S I P + + G LS G KQ + +AR++L KILLLDE ++ LD +
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 276 IVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 335
I++ L + T ++ R+ + D VI++ +V + + EL R
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPAD-----R 247
Query: 336 FQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRS 371
F N + +T + + R
Sbjct: 248 FVAGFIGSPKMNFLPVKVTATAIDQVQVELPMPNRQ 283
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 6e-48
Identities = 63/242 (26%), Positives = 110/242 (45%), Gaps = 21/242 (8%)
Query: 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 801
E+ + +V + V KD N +I GQ A+ G++G+GK+S++ +I +P+
Sbjct: 4 TTEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 802 GKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATE--AEVVEAARA 859
GK+ G+ I Q + +I +NI +G V++A
Sbjct: 63 GKIKHSGR-------------ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKAC-- 107
Query: 860 ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE-S 918
S +GE G+ LSGGQ+ RI++ARAV K+ + LLD LD
Sbjct: 108 QLEEDI-SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 166
Query: 919 ECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 978
+ + + + +LM +T +LV ++ ++ D I ++ +G G+ SEL + +S
Sbjct: 167 KEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSS 225
Query: 979 LL 980
L
Sbjct: 226 KL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 168 bits (429), Expect = 9e-48
Identities = 58/243 (23%), Positives = 111/243 (45%), Gaps = 24/243 (9%)
Query: 97 NGNIEFKNVTFSY-PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 155
+ +NVT + V+ +D + G+ +AV G +G+GK++++ +I +P+
Sbjct: 4 TTEVVMENVTAFWEEGGTPVL--KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61
Query: 156 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP--EATMAEV-EAAA 212
G + +I +Q + TI ENI++G E V +A
Sbjct: 62 EGKIKH-------------SGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQ 108
Query: 213 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272
+ I+ + +GE G+ LSGGQ+ RI++ARA+ K+ + LLD LD
Sbjct: 109 LEED----ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVL 164
Query: 273 -SESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYA 331
+ I + + +LM +T ++V ++ ++ D + ++ +G GT EL ++
Sbjct: 165 TEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFS 224
Query: 332 SLI 334
S +
Sbjct: 225 SKL 227
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 2e-46
Identities = 77/247 (31%), Positives = 122/247 (49%), Gaps = 29/247 (11%)
Query: 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
I +R+ F + +R D I G A+VG G GKSS+++ + D G
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 803 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATE--AEVVEAARAA 860
V I G + V Q+ + S+ +NI +G + V++A A
Sbjct: 61 HVAIKGS-------------VAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQAC--A 105
Query: 861 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE--- 917
+ LP+ +T +GE+GV LSGGQKQR+++ARAV N I L D+ SA+DA
Sbjct: 106 LLPDL-EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 164
Query: 918 ---SECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDG 974
+ + +++ +T +LV H +S + VD I V+ G+I E GS+ EL++R DG
Sbjct: 165 HIFENVIGP---KGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DG 220
Query: 975 AYSRLLQ 981
A++ L+
Sbjct: 221 AFAEFLR 227
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 2e-45
Identities = 76/244 (31%), Positives = 129/244 (52%), Gaps = 24/244 (9%)
Query: 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 157
+I +N TF++ + + P G VAVVG G GKS+++S + D G
Sbjct: 2 NSITVRNATFTWARSDPPTL-NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 158 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP--EATMAEV-EAAASA 214
HV + + + V Q+ + ++ ENIL+G E V +A A
Sbjct: 61 HVAI-------------KGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALL 107
Query: 215 ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-S 273
+ + +LP+G T++GE+GV LSGGQKQR+++ARA+ N I L D+ SA+DA
Sbjct: 108 PD----LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 163
Query: 274 ESIVQEALDR--LMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYA 331
+ I + + ++ +T ++V H +S + VD + V+ G++ E G+++EL+A+ GA+A
Sbjct: 164 KHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFA 223
Query: 332 SLIR 335
+R
Sbjct: 224 EFLR 227
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 7e-46
Identities = 60/300 (20%), Positives = 121/300 (40%), Gaps = 27/300 (9%)
Query: 73 LMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVA 132
E + + N R + ++ F N + + +D + G+ +A
Sbjct: 14 WEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP-----VLKDINFKIERGQLLA 68
Query: 133 VVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTI 192
V G +G+GK++++ +I +P+ G + +I +Q + TI
Sbjct: 69 VAGSTGAGKTSLLMMIMGELEPSEGKIKH-------------SGRISFCSQNSWIMPGTI 115
Query: 193 LENILYGKP--EATMAEV-EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249
ENI+ G E V +A + I+ + +GE G+ LSGGQ+ RI++
Sbjct: 116 KENII-GVSYDEYRYRSVIKACQLEED----ISKFAEKDNIVLGEGGITLSGGQRARISL 170
Query: 250 ARAMLKNPKILLLDEATSALDAG-SESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAV 308
ARA+ K+ + LLD LD + I + + +LM +T ++V ++ ++ D + +
Sbjct: 171 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 230
Query: 309 IQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLS 368
+ +G GT EL ++S + + ++ + + +S
Sbjct: 231 LHEGSSYFYGTFSELQNLRPDFSSKLMGCDSFDQFSAERRNSILTETLHRFSLEGDAPVS 290
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 2e-44
Identities = 64/271 (23%), Positives = 116/271 (42%), Gaps = 22/271 (8%)
Query: 714 SVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAG 773
+ +V + + + + + + + F+ S V KD N +I G
Sbjct: 6 VMENVTAFWEE-GFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERG 64
Query: 774 QSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALF 833
Q A+ G++G+GK+S++ +I +P+ GK+ G+ I Q +
Sbjct: 65 QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR-------------ISFCSQNSWIM 111
Query: 834 AASIFDNIAYGKEGATE--AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 891
+I +NI G V++A S +GE G+ LSGGQ+ R
Sbjct: 112 PGTIKENI-IGVSYDEYRYRSVIKAC--QLEEDI-SKFAEKDNIVLGEGGITLSGGQRAR 167
Query: 892 IAIARAVLKNPAILLLDEATSALDAE-SECVLQEALERLMRGRTTVLVAHRLSTIRGVDC 950
I++ARAV K+ + LLD LD + + + + +LM +T +LV ++ ++ D
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADK 227
Query: 951 IGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 981
I ++ +G G+ SEL + +S L
Sbjct: 228 ILILHEGSSYFYGTFSELQNL-RPDFSSKLM 257
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 2e-43
Identities = 48/236 (20%), Positives = 94/236 (39%), Gaps = 28/236 (11%)
Query: 745 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
I+L++V + + ++ NL + G+ ++G +GSGK++++ I P +G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 804 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFA--ASIFDNIAYGKE--GATEAEVVEAARA 859
+ I+G ++R++ R I P + ++ D + +E G +E +A
Sbjct: 60 IFINGMEVRKI-----RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 860 AN-VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 918
+ +LS GQ + + A+ P I+ LDE +DA
Sbjct: 115 LKLGEEILRRKLY-----------KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 919 ECVLQEALERLMRGRTTVLVAHRLST-IRGVDCIGVVQDGRIVEQ-GSHSELVSRP 972
V+ ++ G+ +LV H L + G ++ S SEL+
Sbjct: 164 RHVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESS 217
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 8e-39
Identities = 42/238 (17%), Positives = 90/238 (37%), Gaps = 34/238 (14%)
Query: 100 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
I+ KNV + + + + ++ G+ V ++G +GSGK+T++ I P +G+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 159 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFA--TTILENILYG-----KPEATMAEVEAA 211
+ ++ ++++ + R+ I P + T+ + +
Sbjct: 60 IFINGMEVRKI-----RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRD---LFLEM 111
Query: 212 ASAANAHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALD 270
A L R + +LS GQ + + A+ P+I+ LDE +D
Sbjct: 112 LKALK-------LGEEI----LRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVD 160
Query: 271 AGSESIVQEALDRLMVGRTTVVVAHRLST-IRNVDTVAVIQQGQVVE-TGTHEELIAK 326
A ++ + G+ ++V H L + A G ++ + EL+
Sbjct: 161 AARRHVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 6e-43
Identities = 77/247 (31%), Positives = 132/247 (53%), Gaps = 19/247 (7%)
Query: 745 IELRHVDFAYPSR-PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
I+L ++ + + + +L + AGQ ++GASG+GKS++I + PT G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 804 VMIDGKDIRRLN---LKSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARA 859
V++DG+++ L+ L R +IG++ Q L ++ ++F N+A E + R
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 860 ANVHGFV--SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 917
+ V ++Y P LSGGQKQR+AIARA+ NP +LL D+ATSALD
Sbjct: 145 TELLSLVGLGDKHDSY--PS-----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
Query: 918 S-ECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPD 973
+ +L E L+ + R G T +L+ H + ++ + DC+ V+ +G ++EQ + SE+ S P
Sbjct: 198 TTRSIL-ELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPK 256
Query: 974 GAYSRLL 980
++
Sbjct: 257 TPLAQKF 263
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 3e-38
Identities = 76/237 (32%), Positives = 123/237 (51%), Gaps = 17/237 (7%)
Query: 100 IEFKNVTFSYPSR-PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
I+ N+T + + + S+ PAG+ V+G SG+GKST++ + P G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 159 VLLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASA 214
VL+D ++ TL +L R QIG++ Q L ++ T+ N+ P +
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL--P-LELDNTPKDEVK 141
Query: 215 ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALD-AGS 273
++L+ G + LSGGQKQR+AIARA+ NPK+LL D+ATSALD A +
Sbjct: 142 RRVTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATT 199
Query: 274 ESI---VQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 326
SI +++ RL G T +++ H + ++ + D VAVI G+++E T E+ +
Sbjct: 200 RSILELLKDINRRL--GLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 3e-42
Identities = 62/238 (26%), Positives = 118/238 (49%), Gaps = 18/238 (7%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+++ +++ Y K N+ I+ G+ A++G +G GKS++ P++G++
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 805 MIDGKDI--RRLNLKSLRLKIGLVQQEPA--LFAASIFDNIAYGKE--GATEAEVVEAAR 858
+ D K I R + LR IG+V Q+P LF+AS++ ++++G E E+ + R
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRK--R 123
Query: 859 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 918
N K LS GQK+R+AIA ++ P +L+LDE T+ LD
Sbjct: 124 VDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMG 178
Query: 919 ECVLQEALERLMR--GRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPD 973
+ + L + + G T ++ H + + D + V+++GR++ QG+ E+ + +
Sbjct: 179 VSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKE 236
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 4e-39
Identities = 62/248 (25%), Positives = 118/248 (47%), Gaps = 32/248 (12%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
++ + + ++Y + + ++ G+ A++GG+G GKST+ P++G +
Sbjct: 8 LKVEELNYNYSDGTHAL--KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 160 LLDNVDIKTLQ--LRWLRDQIGLVNQEPA--LFATTILENILYG-----KPEATMAE-VE 209
L DN I + + LR+ IG+V Q+P LF+ ++ +++ +G PE + + V+
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 210 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 269
A + LS GQK+R+AIA ++ PK+L+LDE T+ L
Sbjct: 126 NALKRTGIEHLKDKPTH-----------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 270 DAGSESIVQEALDRLM--VGRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGT------H 320
D S + + L + +G T ++ H + + D V V+++G+V+ G
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
Query: 321 EELIAKAG 328
+E+I K
Sbjct: 235 KEVIRKVN 242
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 152 bits (387), Expect = 1e-41
Identities = 66/257 (25%), Positives = 119/257 (46%), Gaps = 29/257 (11%)
Query: 745 IELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
IE+ +V + + ++ +L I G+ + G +GSGKS+++ ++ +PT+G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 803 KVMIDGKDIRRLNLKSLRLKIGLVQQEPA--LFAASIFDNIAYGKE--GATEAEVVEAAR 858
V+ DG+ +R IG+ Q P FA +FD +A+ + + V +
Sbjct: 63 DVLYDGERK---KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR-DPVPLVK 118
Query: 859 AA------NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 912
A + F +P LSGG+K+R+AIA ++ P IL+LDE
Sbjct: 119 KAMEFVGLDFDSFKDRVPF-----------FLSGGEKRRVAIASVIVHEPDILILDEPLV 167
Query: 913 ALDAESECVLQEALERL-MRGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVS 970
LD E + L +E+ G+T +L++H + T+ VD + V++ G+ V G+ E +
Sbjct: 168 GLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227
Query: 971 RPDGAYSRLLQLQHHHI 987
+ D + L +
Sbjct: 228 KYDPRFFTSKMLVMRRL 244
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 4e-37
Identities = 62/235 (26%), Positives = 115/235 (48%), Gaps = 15/235 (6%)
Query: 100 IEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 157
IE NV+ + + + S+ G+ + V G +GSGKST++ ++ +P +G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 158 HVLLDNVDIKTLQLRWLRDQIGLVNQEPA--LFATTILENILYGKPEATMAEVEAAASAA 215
VL D K +R IG+ Q P FA + + + + + + +
Sbjct: 63 DVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFA-VKNFYPDRDPVPLVK 118
Query: 216 NAHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274
A F+ L + + +R LSGG+K+R+AIA ++ P IL+LDE LD +
Sbjct: 119 KAMEFVGLDFDSFK----DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK 174
Query: 275 SIVQEALDRL-MVGRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEELIAKA 327
+ + +++ +G+T ++++H + T+ +VD V V+++G+ V GT E + K
Sbjct: 175 TDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 7e-41
Identities = 61/289 (21%), Positives = 123/289 (42%), Gaps = 37/289 (12%)
Query: 716 GSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQS 775
GS S+ + P + I+L + + + K + +I G
Sbjct: 1 GSSHHHHHHSSGLVPRGSH--ML------IQLDQIGRMKQGKT---ILKKISWQIAKGDK 49
Query: 776 QALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL--NLKSLRLKIGLVQQEPAL- 832
L G +G+GK++++ ++ + T+G V + GK ++ + +++R IG V
Sbjct: 50 WILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEK 109
Query: 833 --FAASIFDNI---AYGKEG----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ 883
+ D + A+ G + EA + + G +SA +G
Sbjct: 110 FQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVG-MSAKAQ---QYIG----Y 161
Query: 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR---GRTTVLVAH 940
LS G+KQR+ IARA++ P +L+LDE + LD + L L+ L + V H
Sbjct: 162 LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTH 221
Query: 941 RLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPD--GAYSRLLQLQHHH 986
+ I I +++DG+ ++QG+ ++++ + + + + +Q +
Sbjct: 222 FIEEITANFSKILLLKDGQSIQQGAVEDILTSENMSRFFQKNVAVQRWN 270
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 2e-35
Identities = 49/246 (19%), Positives = 98/246 (39%), Gaps = 31/246 (12%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
I+ + + I + S G + G +G+GK+T+++++ + +G V
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 160 LLDNVDI--KTLQLRWLRDQIGLVNQEPAL---FATTILENIL---------YGKPEATM 205
L +R IG V+ +++ ++ Y + +
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 206 AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 265
AH + L+ G S + + LS G+KQR+ IARA++ P++L+LDE
Sbjct: 139 RNE--------AHQLLKLV--GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEP 188
Query: 266 TSALDAGSESIVQEALDRLM---VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE 321
+ LD + + LD L + V H + I + +++ GQ ++ G E
Sbjct: 189 AAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248
Query: 322 ELIAKA 327
+++
Sbjct: 249 DILTSE 254
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 7e-36
Identities = 70/243 (28%), Positives = 120/243 (49%), Gaps = 35/243 (14%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE V+ YP + + +IR G+ L+G SGSGK++++ LI PT G V
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG------KEGATEAEVVEAA 857
I GK + +L + +GLV Q ALF +++DN+++G + +A V E
Sbjct: 73 WIGGKRV--TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 858 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 917
R + + + P+ +LSGGQ+QR+A+ARA+ P +LL DE +A+D +
Sbjct: 131 RFMRLESYANRFPH-----------ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
Query: 918 SECVLQEALERLMR--GRTTVLVAH------RLSTIRGVDCIGVVQDGRIVEQGSHSELV 969
L+ + ++ G T+V V H ++ D + V+ +G + + G+ E+
Sbjct: 180 IRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVA-----DRVLVLHEGNVEQFGTPEEVY 234
Query: 970 SRP 972
+P
Sbjct: 235 EKP 237
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 2e-31
Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 25/234 (10%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IEF V YP R S G+ V ++G SGSGK+T++ LI P G V
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAH 218
+ + L + + +GLV Q ALF T+ +N+ +G E + + E A
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 219 SFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 277
F+ L R +LSGGQ+QR+A+ARA+ P++LL DE +A+D +
Sbjct: 131 RFMRL------ESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL 184
Query: 278 QEALDRL--MVGRTTVVVAH------RLSTIRNVDTVAVIQQGQVVETGTHEEL 323
+ + ++ +G T+V V H ++ D V V+ +G V + GT EE+
Sbjct: 185 RTFVRQVHDEMGVTSVFVTHDQEEALEVA-----DRVLVLHEGNVEQFGTPEEV 233
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 1e-34
Identities = 68/247 (27%), Positives = 120/247 (48%), Gaps = 40/247 (16%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+ + H+ ++ + V D +L + G+ ++GASG GK++++ + F P +G++
Sbjct: 5 LHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 805 MIDGKDI--RRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG--KEGATEAEVVEAARA 859
+ GK I + NL ++G + QE LF +++ NIAYG A+ R
Sbjct: 62 SLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQE--RQRI 119
Query: 860 ANV------HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 913
+ P+ +LSGGQ+QR A+ARA+ +P ++LLDE SA
Sbjct: 120 EAMLELTGISELAGRYPH-----------ELSGGQQQRAALARALAPDPELILLDEPFSA 168
Query: 914 LDAESECVLQEALERLMR--GRTTVLVAH------RLSTIRGVDCIGVVQDGRIVEQGSH 965
LD + ++E + +R G++ V V+H + + D I V++ GRI++ S
Sbjct: 169 LDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYA-----DRIAVMKQGRILQTASP 223
Query: 966 SELVSRP 972
EL +P
Sbjct: 224 HELYRQP 230
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 2e-29
Identities = 61/237 (25%), Positives = 114/237 (48%), Gaps = 28/237 (11%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+ +++ S+ + P + D S+ G+ + ++G SG GK+T++ + F P++G +
Sbjct: 5 LHIGHLSKSFQNTPVL---NDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 160 LLDNVDIKTLQLR---WLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAA 215
L I + R +G + QE LF T+ NI YG +
Sbjct: 62 SLSGKTIFSKNTNLPVRERR-LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIE 120
Query: 216 NAHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274
+ +++ R +LSGGQ+QR A+ARA+ +P+++LLDE SALD
Sbjct: 121 AMLELTGI------SELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLR 174
Query: 275 SIVQEALDRLM--VGRTTVVVAH------RLSTIRNVDTVAVIQQGQVVETGTHEEL 323
++E + + G++ V V+H + + D +AV++QG++++T + EL
Sbjct: 175 RQIREDMIAALRANGKSAVFVSHDREEALQYA-----DRIAVMKQGRILQTASPHEL 226
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 1e-34
Identities = 72/209 (34%), Positives = 103/209 (49%), Gaps = 31/209 (14%)
Query: 777 ALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-A 835
L+G +G+GKS + LI P G+V ++G DI L R IG V Q+ ALF
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGFVPQDYALFPHL 85
Query: 836 SIFDNIAYGKEGATEAE----VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 891
S++ NIAYG E V E A + + P +LSGG++QR
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-----------RLSGGERQR 134
Query: 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAH------RLS 943
+A+ARA++ P +LLLDE SA+D +++ VL E L + R + V H L+
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLA 194
Query: 944 TIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
D + V+ +GRIVE+G EL S
Sbjct: 195 -----DEVAVMLNGRIVEKGKLKELFSAK 218
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 1e-29
Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 29/205 (14%)
Query: 131 VAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA- 189
++G +G+GKS + LI P+ G V L+ DI L R IG V Q+ ALF
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP-PERRG-IGFVPQDYALFPH 84
Query: 190 TTILENILYG--KPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGV-QLSGGQKQR 246
++ NI YG + VE + + + +R +LSGG++QR
Sbjct: 85 LSVYRNIAYGLRN----VERVERDRRVREMAEKLGI------AHLLDRKPARLSGGERQR 134
Query: 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL--MVGRTTVVVAH------RLS 298
+A+ARA++ P++LLLDE SA+D ++ ++ E L + + V H L+
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLA 194
Query: 299 TIRNVDTVAVIQQGQVVETGTHEEL 323
D VAV+ G++VE G +EL
Sbjct: 195 -----DEVAVMLNGRIVEKGKLKEL 214
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 2e-34
Identities = 65/240 (27%), Positives = 121/240 (50%), Gaps = 34/240 (14%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE+ + + + +L++ +G+ ++G +G+GK+ + LI F+ P +G++
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG--KEGATEAE-VVEAARAA 860
++DGKD+ +L + I V Q +LF ++ N+ +G + + + V++ AR
Sbjct: 58 LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 861 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 920
+ + P LSGG++QR+A+ARA++ NP ILLLDE SALD ++
Sbjct: 116 KIEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
Query: 921 VLQEALERLMR--GRTTVLVAH------RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 972
+E L L + T + + H ++ D I VV DG++++ G E+ +P
Sbjct: 165 NAREMLSVLHKKNKLTVLHITHDQTEARIMA-----DRIAVVMDGKLIQVGKPEEIFEKP 219
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 2e-28
Identities = 62/236 (26%), Positives = 116/236 (49%), Gaps = 34/236 (14%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IE ++++ + + S+ +G+ ++G +G+GK+ + LI F+ P++G +
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 160 LLDNVDIKTL--QLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAAN 216
LLD D+ L + I V Q +LF + +N+ +G M +++ +
Sbjct: 58 LLDGKDVTDLSPEKH----DIAFVYQNYSLFPHMNVKKNLEFG---MRMKKIKDPKRVLD 110
Query: 217 AHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 275
+ + + +R LSGG++QR+A+ARA++ NPKILLLDE SALD ++
Sbjct: 111 TARDLKI------EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
Query: 276 IVQEALDRL--MVGRTTVVVAH------RLSTIRNVDTVAVIQQGQVVETGTHEEL 323
+E L L T + + H ++ D +AV+ G++++ G EE+
Sbjct: 165 NAREMLSVLHKKNKLTVLHITHDQTEARIMA-----DRIAVVMDGKLIQVGKPEEI 215
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 3e-34
Identities = 79/273 (28%), Positives = 126/273 (46%), Gaps = 38/273 (13%)
Query: 715 VGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQ 774
+GS S+ + P + I++ + ++ + V K N+ IR G+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMLQM------IDVHQLKKSFG---SLEVLKGINVHIREGE 51
Query: 775 SQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI--RRLNLKSLRLKIGLVQQEPAL 832
++G SGSGKS+ + + D G+++IDG ++ + NL +R ++G+V Q L
Sbjct: 52 VVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNL 111
Query: 833 FA-ASIFDNIAYGK---EGATEAEVVEAARA--ANVHGFVSALPN-AYKTPVGERGVQLS 885
F ++ +NI + A V L + A+ P LS
Sbjct: 112 FPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVG-----LKDKAHAYPD-----SLS 161
Query: 886 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-----GRTTVLVAH 940
GGQ QR+AIARA+ P I+L DE TSALD E ++ E L +M+ G T V+V H
Sbjct: 162 GGQAQRVAIARALAMEPKIMLFDEPTSALDPE---MVGEVLS-VMKQLANEGMTMVVVTH 217
Query: 941 RLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 972
+ R V D + + G I+E+G +L RP
Sbjct: 218 EMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 5e-34
Identities = 79/267 (29%), Positives = 121/267 (45%), Gaps = 45/267 (16%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
I+ + S+ + + + ++ G+ V V+G SGSGKST + + D + G +
Sbjct: 25 IDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 160 LLDNVDI--KTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEAT-MAEVEAAASAA 215
++D +++ K L +R+++G+V Q LF T+L NI + +A A A
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA- 140
Query: 216 NAHSFITLLPN-GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274
+ LL G + LSGGQ QR+AIARA+ PKI+L DE TSALD
Sbjct: 141 -----MELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP--- 192
Query: 275 SIVQEALDRLMV-----GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAKAG 328
+V E L +M G T VVV H + R V D V + G ++E G E+L
Sbjct: 193 EMVGEVLS-VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL----- 246
Query: 329 AYASLIRFQEMVRNRDFANPSTRRSRS 355
F P R+++
Sbjct: 247 ----------------FDRPQHERTKA 257
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 4e-33
Identities = 77/260 (29%), Positives = 121/260 (46%), Gaps = 58/260 (22%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+ ++ Y + + S+ AG ++++G SGSGKST + I P+ G +
Sbjct: 7 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63
Query: 160 LLDNVDIKTL-------------QLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATM 205
+++ +I + QLR LR ++ +V Q L++ T+LEN++ EA +
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM----EAPI 119
Query: 206 -------AEVEAAASAANAHSFITLLPNGYSTQVG--ERG-----VQLSGGQKQRIAIAR 251
+ A L +VG ER V LSGGQ+QR++IAR
Sbjct: 120 QVLGLSKHDARERALK--------YL-----AKVGIDERAQGKYPVHLSGGQQQRVSIAR 166
Query: 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLMV-----GRTTVVVAHRLSTIRNV-DT 305
A+ P +LL DE TSALD E +V E L +M G+T VVV H + R+V
Sbjct: 167 ALAMEPDVLLFDEPTSALD--PE-LVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSH 222
Query: 306 VAVIQQGQVVETGTHEELIA 325
V + QG++ E G E++
Sbjct: 223 VIFLHQGKIEEEGDPEQVFG 242
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 7e-32
Identities = 72/239 (30%), Positives = 119/239 (49%), Gaps = 37/239 (15%)
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL---- 814
V K +L+ RAG +++G+SGSGKS+ + I P+ G ++++G++I +
Sbjct: 18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 77
Query: 815 ---------NLKSLRLKIGLVQQEPALFA-ASIFDNIAYGK---EGATEAEVVEAARA-- 859
L+ LR ++ +V Q L++ ++ +N+ G ++ + E A
Sbjct: 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYL 137
Query: 860 ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 919
A V G Y PV LSGGQ+QR++IARA+ P +LL DE TSALD E
Sbjct: 138 AKV-GIDERAQGKY--PV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE-- 187
Query: 920 CVLQEALERLMR-----GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 972
++ E L R+M+ G+T V+V H + R V + + G+I E+G ++ P
Sbjct: 188 -LVGEVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNP 244
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 4e-30
Identities = 57/298 (19%), Positives = 103/298 (34%), Gaps = 39/298 (13%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLI--------ERF 151
+VT Y + + R + G+ + +VG +G GKST + ++ RF
Sbjct: 78 NLEAHVTHRYSAN-SFKLHRLPTP--RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134
Query: 152 YDPNAGHVLLDNVDIKTLQ---LRWLRDQIGLVNQEP--ALFATTILENILYG------K 200
DP ++ LQ + L D I + + I + +
Sbjct: 135 DDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR 194
Query: 201 PEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKI 259
E + +V+ V +R + +LSGG+ QR AI + ++ +
Sbjct: 195 MEKSPEDVKRYIKILQL------------ENVLKRDIEKLSGGELQRFAIGMSCVQEADV 242
Query: 260 LLLDEATSALDAGSESIVQEALDRLMVGRTTVVVA-HRLSTIRNV-DTVAVIQQGQVVET 317
+ DE +S LD + + L+ V+ H LS + + D V +I V
Sbjct: 243 YMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYG 302
Query: 318 GTHEELIAKAGAYASLIRF--QEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGS 373
+ G L E +R R A + L + ++++ S S
Sbjct: 303 VVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLK 360
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 3e-29
Identities = 52/268 (19%), Positives = 90/268 (33%), Gaps = 43/268 (16%)
Query: 99 NIEFKNVTFSYPS---RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 155
+ + FSYPS + F + + ++G +G+GK+T++ L+ P+
Sbjct: 346 QNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD 405
Query: 156 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEAAAS 213
G + L + +I LF I L +
Sbjct: 406 EGQDIPK------LNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQ------FQTDVVK 453
Query: 214 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 273
I LSGG+ QR+AI A+ I L+DE ++ LD+
Sbjct: 454 PLRIDDIIDQEVQ-----------HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQ 502
Query: 274 ESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVE--TGTHEELIAKAG 328
I + + R + +T +V H + D V V + E L+
Sbjct: 503 RIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGCN 562
Query: 329 AYAS--LIRFQEMVRNRDFANPSTRRSR 354
+ + F+ RD P++ R R
Sbjct: 563 RFLKNLNVTFR-----RD---PNSFRPR 582
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 4e-29
Identities = 40/239 (16%), Positives = 78/239 (32%), Gaps = 30/239 (12%)
Query: 733 PDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIAL 792
E ++ + V + ++G +G+GK+++I L
Sbjct: 340 DATEDLQNDSASRAFSYPSLKK--TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKL 397
Query: 793 IERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKEGATE 850
+ P G+ I +LN+ KI LF I +
Sbjct: 398 LAGALKPDEGQD------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRG------QFLNP 445
Query: 851 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 910
+ + + + LSGG+ QR+AI A+ I L+DE
Sbjct: 446 QFQTDVVKPLRIDDIIDQEVQ-----------HLSGGELQRVAIVLALGIPADIYLIDEP 494
Query: 911 TSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHS 966
++ LD+E + + + R + +T +V H + D + V + + +
Sbjct: 495 SAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARA 553
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 1e-25
Identities = 44/233 (18%), Positives = 79/233 (33%), Gaps = 23/233 (9%)
Query: 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
HV Y + + R GQ LVG +G GKS+ + ++ P G+
Sbjct: 77 TNLEAHVTHRYSANSFKL---HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133
Query: 804 V-----------MIDGKDIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKEGATE 850
G +++ K L I + + +I + E
Sbjct: 134 FDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL 193
Query: 851 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 910
+ L N K + +LSGG+ QR AI + ++ + + DE
Sbjct: 194 RMEKSPEDVKRYIKILQ-LENVLKRDIE----KLSGGELQRFAIGMSCVQEADVYMFDEP 248
Query: 911 TSALDAESECVLQEALERLMRGRTTVLVA-HRLSTIRGV-DCIGVVQDGRIVE 961
+S LD + + + L+ V+ H LS + + D + ++ V
Sbjct: 249 SSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 4e-30
Identities = 66/247 (26%), Positives = 121/247 (48%), Gaps = 35/247 (14%)
Query: 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
I +++V + VV + N+ I G+ ++G SG+GK++ + +I P+ G+
Sbjct: 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 804 VMIDGKDIRRLNLKSLRLK---IGLVQQEPALFA-ASIFDNIAYG----KEGATEAE--V 853
+ D + + + + IG+V Q AL+ + F+NIA+ K E V
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 854 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 913
E A+ ++H ++ P +LSG Q+QR+A+ARA++K+P++LLLDE S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 914 LDAESECVLQEALERLMR--GRTTVLVAH------RLSTIRGVDCIGVVQDGRIVEQGSH 965
LDA + ++ + G T ++V+H ++ D +GV+ G++V+ G
Sbjct: 171 LDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIA-----DRVGVLVKGKLVQVGKP 225
Query: 966 SELVSRP 972
+L P
Sbjct: 226 EDLYDNP 232
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 5e-23
Identities = 67/244 (27%), Positives = 115/244 (47%), Gaps = 37/244 (15%)
Query: 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
I KNV+ + V+ + +I G+ ++G SG+GK+T + +I P+ G
Sbjct: 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 159 VLLDNVDIKTLQLRWL----RDQIGLVNQEPALFAT-TILENILYG-----KPEATMAE- 207
+ D+ + + + R IG+V Q AL+ T ENI + + + +
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRK-IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR 120
Query: 208 VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 267
VE A + H + P +LSG Q+QR+A+ARA++K+P +LLLDE S
Sbjct: 121 VEEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFS 169
Query: 268 ALDAGSESIVQEALDRL--MVGRTTVVVAH------RLSTIRNVDTVAVIQQGQVVETGT 319
LDA + + + +G T +VV+H ++ D V V+ +G++V+ G
Sbjct: 170 NLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIA-----DRVGVLVKGKLVQVGK 224
Query: 320 HEEL 323
E+L
Sbjct: 225 PEDL 228
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 6e-30
Identities = 57/237 (24%), Positives = 105/237 (44%), Gaps = 40/237 (16%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSS---VIALIERFYDPTA 801
+ ++ + K +L ++ G+ +++GASGSGKS+ ++ L++ PT
Sbjct: 5 LRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTE 58
Query: 802 GKVMIDGKDIRRLNLKSL----RLKIGLV-QQEPALFAASIFDNIA----YGKEGATEAE 852
GKV ++GK++ N K L K+G V Q + + +N+ + EA+
Sbjct: 59 GKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAK 118
Query: 853 VVEAARAANVHGFV------SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILL 906
R + + S P +LSGG++QR+AIARA+ P +L
Sbjct: 119 ----ERGEYLLSELGLGDKLSRKPY-----------ELSGGEQQRVAIARALANEPILLF 163
Query: 907 LDEATSALDAESECVLQEALERL-MRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 962
DE T LD+ + + + ++ G + V+V H ++DG++V +
Sbjct: 164 ADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 1e-27
Identities = 60/233 (25%), Positives = 99/233 (42%), Gaps = 34/233 (14%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+ +N+ I + S+ G+ V+++G SGSGKST++ ++ P G V
Sbjct: 5 LRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 160 LLDNVDIKTL---QLRWLRDQ-IGLVNQEPALFA-TTILENI----LYGKPEATMAEVEA 210
L+ ++ +L LR++ +G V Q L T LEN+ L + EA
Sbjct: 62 FLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG----KPKKEA 117
Query: 211 AASAANAHSFITL------LPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE 264
S + L P +LSGG++QR+AIARA+ P +L DE
Sbjct: 118 KERGEYLLSELGLGDKLSRKPY-----------ELSGGEQQRVAIARALANEPILLFADE 166
Query: 265 ATSALDAGSESIVQEALDRL-MVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVE 316
T LD+ + V + ++ G + V+V H ++ G+VV
Sbjct: 167 PTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 9e-30
Identities = 70/238 (29%), Positives = 116/238 (48%), Gaps = 35/238 (14%)
Query: 745 IELRHVDFAYPS-RPDVVVFKDFNLRIRAGQSQALVGASGSGKSS---VIALIERFYDPT 800
++L++V Y + K+ NL I+ G+ +++G SGSGKS+ +I +++ PT
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58
Query: 801 AGKVMIDGKDIRRLNLKSL----RLKIGLVQQEPALFA-ASIFDNIA-----YGKEGATE 850
G+V ID L+ L R KIG V Q+ L + +N+ + +
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG 118
Query: 851 AEVVEAARAA--NV---HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAIL 905
E + A F + PN QLSGGQ+QR+AIARA+ NP I+
Sbjct: 119 EERRKRALECLKMAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPII 167
Query: 906 LLDEATSALDAESECVLQEALERL--MRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVE 961
L D+ T ALD+++ + + L++L G+T V+V H ++ R + I ++DG +
Sbjct: 168 LADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-29
Identities = 75/235 (31%), Positives = 117/235 (49%), Gaps = 29/235 (12%)
Query: 100 IEFKNVTFSYPS-RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
++ KNVT +Y + ++ ++ G+ V+++G SGSGKST++++I P G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 159 VLLDNVDIKTL---QLRWLR-DQIGLVNQEPALFA-TTILENI---LYGKPEATMAEVEA 210
V +DN+ L +L +R D+IG V Q+ L T LEN+ L K M+ E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 211 AASAANA-------HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLD 263
A F PN QLSGGQ+QR+AIARA+ NP I+L D
Sbjct: 122 RKRALECLKMAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPIILAD 170
Query: 264 EATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVE 316
+ T ALD+ + + + L +L G+T VVV H ++ R + + ++ G+V
Sbjct: 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 1e-29
Identities = 51/232 (21%), Positives = 98/232 (42%), Gaps = 32/232 (13%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
++L+ V + + +RAG+ LVG +G+GKS+++A + G +
Sbjct: 5 MQLQDVA-------ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 56
Query: 805 MIDGKDIRRLNLKSLRLKIGLV-QQEPALFAASIFDNIAYGKEGATEAEVVEAA-RAANV 862
G+ + + L L + QQ+ FA ++ + + T E++ A +
Sbjct: 57 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL 116
Query: 863 HGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVL-------KNPAILLLDEATSAL 914
+ R QLSGG+ QR+ +A VL +LLLDE ++L
Sbjct: 117 DDKL------------GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSL 164
Query: 915 D-AESECVLQEALERLMRGRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGS 964
D A+ + + +G V+ +H L+ T+R +++ G+++ G
Sbjct: 165 DVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 9e-29
Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 33/224 (14%)
Query: 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD 176
S AG+ + +VG +G+GKST+++ + G + ++ L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLAL 73
Query: 177 QIGLVNQEPAL-FATTILENILYG-KPEATMAEVEAAASAANAHSFITLLPNGYSTQVGE 234
++Q+ FAT + + + + A A
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK------------LG 121
Query: 235 RGV-QLSGGQKQRIAIARAML-------KNPKILLLDEATSALDAGSESIVQEALDRLMV 286
R QLSGG+ QR+ +A +L ++LLLDE ++LD Q ALD+++
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQ----QSALDKILS 177
Query: 287 -----GRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 324
G V+ +H L+ T+R+ +++ G+++ +G EE++
Sbjct: 178 ALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 1e-29
Identities = 44/240 (18%), Positives = 89/240 (37%), Gaps = 27/240 (11%)
Query: 83 IIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKS 142
++++ ++ ++ +++ + + G+ + ++G +G GK+
Sbjct: 253 MLKEVSDLDLSKDLKTKMKWTKIIKKLGDF----QLVVDNGEAKEGEIIGILGPNGIGKT 308
Query: 143 TVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPE 202
T ++ + G V + + R + G V Q LEN
Sbjct: 309 TFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ--------YLENASKDALS 360
Query: 203 ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLL 262
+ E N H + N LSGG+ Q++ IA + K + +L
Sbjct: 361 TSSWFFEEVTKRLNLHRLLESNVN-----------DLSGGELQKLYIAATLAKEADLYVL 409
Query: 263 DEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGT 319
D+ +S LD IV +A+ R+ T ++ H LS + D + V +G+ + G
Sbjct: 410 DQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF-KGEPEKAGL 468
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 3e-29
Identities = 53/302 (17%), Positives = 108/302 (35%), Gaps = 41/302 (13%)
Query: 103 KNVTFSYPSRPDVIIFRDFSIFFP-AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL 161
V Y V F+ F + P + V+G +G GK+TV+ ++ PN G
Sbjct: 3 GEVIHRY----KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP-- 56
Query: 162 DNVDIKTLQLRWLR-DQIGLVNQEPA---------LFATTILENILYGKPEATMAEVEAA 211
++ K L+ R +I +E + L G + +++
Sbjct: 57 NSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDER 116
Query: 212 ASAANAHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALD 270
+ + + + LSGG QR+ +A ++L+ + + D+ +S LD
Sbjct: 117 GKKDEVKELLNMT------NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLD 170
Query: 271 AGSESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAKAGA 329
+ +A+ L+ + +VV H L + + D + +I V + A+ G
Sbjct: 171 VRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVGI 230
Query: 330 YASLIRF----------------QEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGS 373
L + + V + D + + + T++ L L + +G
Sbjct: 231 NNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGE 290
Query: 374 LR 375
+
Sbjct: 291 AK 292
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 3e-27
Identities = 47/243 (19%), Positives = 91/243 (37%), Gaps = 24/243 (9%)
Query: 724 RSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASG 783
R I + ++ + D + D N + G+ ++G +G
Sbjct: 246 RPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVD-NGEAKEGEIIGILGPNG 304
Query: 784 SGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAY 843
GK++ ++ G V + + + + G VQQ +N +
Sbjct: 305 IGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ--------YLENASK 356
Query: 844 GKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA 903
+ E + N+H + + N LSGG+ Q++ IA + K
Sbjct: 357 DALSTSSWFFEEVTKRLNLHRLLESNVN-----------DLSGGELQKLYIAATLAKEAD 405
Query: 904 ILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIV 960
+ +LD+ +S LD E ++ +A++R+ R T ++ H LS + D I +V G
Sbjct: 406 LYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRI-IVFKGEPE 464
Query: 961 EQG 963
+ G
Sbjct: 465 KAG 467
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 5e-25
Identities = 47/218 (21%), Positives = 87/218 (39%), Gaps = 13/218 (5%)
Query: 763 FKDFNLRI-RAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 821
FK F L + ++G +G GK++V+ ++ P G + K + LK R
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD--PNSKVGKDEVLKRFRG 71
Query: 822 K-IGLVQQEP---ALFAASIFDNIAYGKE--GATEAEVVEAARAANVHGFVSALPNAYKT 875
K I +E L + Y + T E++ V L N T
Sbjct: 72 KEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLN--MT 129
Query: 876 PVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRT 934
+ + LSGG QR+ +A ++L+ + + D+ +S LD + +A+ L++ +
Sbjct: 130 NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKY 189
Query: 935 TVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSR 971
++V H L + + D I ++ V +R
Sbjct: 190 VIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAAR 227
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 4e-29
Identities = 61/305 (20%), Positives = 103/305 (33%), Gaps = 40/305 (13%)
Query: 103 KNVTFSYPSRPDVIIFRDFSIFFP-AGKTVAVVGGSGSGKSTVVS-----LIERFYD-PN 155
++ Y F + + G V +VG +G+GK+T V LI + +
Sbjct: 95 EDCVHRYGVN----AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDND 150
Query: 156 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPAL-FATTILENILYGKPEATMAEVEAAASA 214
+ ++ LQ + R + G + + + P+A +V
Sbjct: 151 SWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLL--------PKAVKGKVRELLKK 202
Query: 215 ANAHSFITLLPNGYS-TQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272
+ + V +R + QLSGG+ QR+AIA A+L+ DE +S LD
Sbjct: 203 VDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIR 262
Query: 273 SESIVQEALDRLMVGRTTVVVA-HRLSTIRNV-DTVAVIQ-----QGQVVETGTHEELIA 325
V + RL V+V H L+ + + D + V+ G + I
Sbjct: 263 QRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGIN 322
Query: 326 KAGAYASLIRFQEMVRNRDFANPSTRRS------RSTRLSHSLSTKSLSLRSGSLRNLSY 379
+ E VR R + T+ S R T + + K L
Sbjct: 323 ---EFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF--KLEVEPG 377
Query: 380 SYSTG 384
G
Sbjct: 378 EIRKG 382
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 4e-28
Identities = 63/285 (22%), Positives = 105/285 (36%), Gaps = 48/285 (16%)
Query: 81 PSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSG 140
I + R E +E+ + Y S G+ + +VG +G G
Sbjct: 339 YEIRFTKLSERVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNGIG 394
Query: 141 KSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGK 200
K+T V ++ +P G V D + Q +
Sbjct: 395 KTTFVKMLAGVEEPTEGKVEWD-------------LTVAYKPQYIKA------------E 429
Query: 201 PEATMAEV--EAAASAANAHSFIT------LLPNGYSTQVGERGVQLSGGQKQRIAIARA 252
E T+ E+ + +S N++ + T + + Y V + LSGG+ QR+AIA
Sbjct: 430 YEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVED----LSGGELQRVAIAAT 485
Query: 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVI 309
+L++ I LLDE ++ LD V A+ LM +T +VV H + I V D + V
Sbjct: 486 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF 545
Query: 310 QQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSR 354
+G+ G + + + RD P + R R
Sbjct: 546 -EGEPGRHGRALPPMGMREGMNRFLASVGITFRRD---PDSGRPR 586
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 6e-25
Identities = 51/249 (20%), Positives = 87/249 (34%), Gaps = 23/249 (9%)
Query: 748 RHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVI-----ALIERFYD-PTA 801
Y ++ G +VG +G+GK++ + LI + +
Sbjct: 95 EDCVHRYG---VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 151
Query: 802 GKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAAN 861
+I L RLK G ++ + D + +G E+++
Sbjct: 152 WDNVIRAFRGNELQNYFERLKNGEIRP---VVKPQYVDLLPKAVKG-KVRELLKKVDEVG 207
Query: 862 VHGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 920
V V +R + QLSGG+ QR+AIA A+L+ DE +S LD
Sbjct: 208 KFEEVVKELEL--ENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRL 265
Query: 921 VLQEALERLMRGRTTVLVA-HRLSTIRGV-DCIGVVQD-----GRIVEQGSHSELVSRPD 973
+ + RL VLV H L+ + + D I VV G + ++
Sbjct: 266 KVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFL 325
Query: 974 GAYSRLLQL 982
Y + +
Sbjct: 326 QGYLKDENV 334
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 8e-25
Identities = 57/263 (21%), Positives = 104/263 (39%), Gaps = 27/263 (10%)
Query: 723 DRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGA 781
D + R P + + V++ + + IR G+ +VG
Sbjct: 331 DENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGP 390
Query: 782 SGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI 841
+G GK++ + ++ +PT GKV D + + G V + L + +
Sbjct: 391 NGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYE-GTVYE---LLSKIDSSKL 446
Query: 842 AYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901
+ E+++ + + Y V + LSGG+ QR+AIA +L++
Sbjct: 447 ---NSNFYKTELLKPLG----------IIDLYDRNVED----LSGGELQRVAIAATLLRD 489
Query: 902 PAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGR 958
I LLDE ++ LD E + A+ LM +T ++V H + I V D + +V +G
Sbjct: 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL-IVFEGE 548
Query: 959 IVEQGSHSELVSRPDGAYSRLLQ 981
G + +G +R L
Sbjct: 549 PGRHGRALPPMGMREG-MNRFLA 570
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 5e-29
Identities = 60/243 (24%), Positives = 98/243 (40%), Gaps = 43/243 (17%)
Query: 97 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 156
N + +N+ F Y + +F+ + G +AV+G +G GKST++ L+ + P
Sbjct: 2 NKALSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59
Query: 157 GHVLLDNVDIKTLQLRWLRDQIGLVNQEP-ALFATTILENILYG---------KP-EATM 205
G + + IG V Q + FA ++L+ +L G KP
Sbjct: 60 GKIEVYQ-------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDY 106
Query: 206 AEVEAAASAANAHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDE 264
A N +R LSGGQ+Q I IARA+ K++LLDE
Sbjct: 107 QVAMQALDYLNLTHL------------AKREFTSLSGGQRQLILIARAIASECKLILLDE 154
Query: 265 ATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLST-IRNVDTVAVIQQGQVVETGTHE 321
TSALD ++ IV L L T V H+ + + + ++ + + G
Sbjct: 155 PTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQ-NFKFGETR 213
Query: 322 ELI 324
++
Sbjct: 214 NIL 216
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 2e-27
Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 42/230 (18%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+ + ++ F Y + +F+ N + G A++G +G GKS+++ L+ + P GK+
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 805 MIDGKDIRRLNLKSLRLKIGLV-QQEPALFAASIFDNIAYG---------KEGATEAEVV 854
+ IG V Q + FA S+ D + G K + + +V
Sbjct: 63 EVYQS-------------IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109
Query: 855 EAA-RAANVHGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATS 912
A N+ +R LSGGQ+Q I IARA+ ++LLDE TS
Sbjct: 110 MQALDYLNLTHL------------AKREFTSLSGGQRQLILIARAIASECKLILLDEPTS 157
Query: 913 ALDAESECVLQEALERLMR--GRTTVLVAHRLST-IRGVDCIGVVQDGRI 959
ALD ++ ++ L L + T V H+ + + + ++
Sbjct: 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 4e-28
Identities = 64/304 (21%), Positives = 103/304 (33%), Gaps = 38/304 (12%)
Query: 103 KNVTFSYPSRPDVIIFRDFSIFFP-AGKTVAVVGGSGSGKSTVVSLIERFYDPN------ 155
++ Y F + + G V +VG +G+GKST V ++ PN
Sbjct: 25 EDCVHRYGVNA----FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDND 80
Query: 156 AGHVLLDNVDIKTLQLRWLR---DQIGLVNQEP--ALFATTILENILYG-KPEATMAEVE 209
+ ++ LQ + + +I V + L + ++ K ++E
Sbjct: 81 SWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLE 140
Query: 210 AAASAANAHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSA 268
A L N V ER + LSGG+ QR+AIA A+L+N DE +S
Sbjct: 141 EVVKALE-------LEN-----VLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSY 188
Query: 269 LDAGSESIVQEALDRLMVGRTTVVVA-HRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 326
LD A+ RL +V+V H L+ + + D + V+ V + +
Sbjct: 189 LDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTR 248
Query: 327 AG--AYASLIRFQEMVRNRD----FANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYS 380
G + E VR R F R + S L
Sbjct: 249 NGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGE 308
Query: 381 YSTG 384
G
Sbjct: 309 IKKG 312
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 2e-27
Identities = 67/286 (23%), Positives = 109/286 (38%), Gaps = 50/286 (17%)
Query: 81 PSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSG 140
I T R E + + + Y S G+ + +VG +G G
Sbjct: 269 YEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNGIG 324
Query: 141 KSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGK 200
K+T V ++ +P G + D + + + + A
Sbjct: 325 KTTFVKMLAGVEEPTEGKIEWD---------------LTVAYKPQYIKA----------D 359
Query: 201 PEATMAEV--EAAASAANAHSFIT-LLPNGYSTQVG-----ERGVQ-LSGGQKQRIAIAR 251
E T+ E+ + AS N++ + T LL +G +R V LSGG+ QR+AIA
Sbjct: 360 YEGTVYELLSKIDASKLNSNFYKTELL-----KPLGIIDLYDREVNELSGGELQRVAIAA 414
Query: 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAV 308
+L++ I LLDE ++ LD V A+ LM +T +VV H + I V D + V
Sbjct: 415 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMV 474
Query: 309 IQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSR 354
+G+ + G + + + RD P T R R
Sbjct: 475 F-EGEPGKYGRALPPMGMREGMNRFLASIGITFRRD---PDTGRPR 516
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 8e-25
Identities = 56/239 (23%), Positives = 93/239 (38%), Gaps = 29/239 (12%)
Query: 763 FKDFNL-RIRAGQSQALVGASGSGKSSVI-----ALIERFYD-PTAGKVMIDGKDIRRLN 815
F + L ++ G +VG +G+GKS+ + LI + +I L
Sbjct: 36 FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQ 95
Query: 816 LKSLRL---KIGLVQQEP--ALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALP 870
+L +I V + L ++ + + A E +E + L
Sbjct: 96 NYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEV-VKALE-----LE 149
Query: 871 NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM 930
N + + LSGG+ QR+AIA A+L+N DE +S LD A+ RL
Sbjct: 150 NVLEREIQ----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS 205
Query: 931 RGRTTVLVA-HRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHHHI 987
+VLV H L+ + + D I VV G G S+P G + + + ++
Sbjct: 206 EEGKSVLVVEHDLAVLDYLSDIIHVVY-GEPGVYGI----FSQPKGTRNGINEFLRGYL 259
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 3e-24
Identities = 56/260 (21%), Positives = 101/260 (38%), Gaps = 30/260 (11%)
Query: 724 RSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASG 783
R I + + Y S + I+ G+ +VG +G
Sbjct: 267 RPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNG 322
Query: 784 SGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAY 843
GK++ + ++ +PT GK+ D + + G V + L + +
Sbjct: 323 IGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYE-GTVYE---LLSKIDASKL-- 376
Query: 844 GKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA 903
+ E+++ + + Y V E LSGG+ QR+AIA +L++
Sbjct: 377 -NSNFYKTELLKPLG----------IIDLYDREVNE----LSGGELQRVAIAATLLRDAD 421
Query: 904 ILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIV 960
I LLDE ++ LD E + A+ LM +T ++V H + I V D + +V +G
Sbjct: 422 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL-MVFEGEPG 480
Query: 961 EQGSHSELVSRPDGAYSRLL 980
+ G + +G +R L
Sbjct: 481 KYGRALPPMGMREG-MNRFL 499
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 4e-28
Identities = 54/226 (23%), Positives = 96/226 (42%), Gaps = 29/226 (12%)
Query: 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 818
+ K + I G+ L+G +G+GK++ + +I P++G V + GK++
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHE 85
Query: 819 LRLKIGLVQQEPAL-----------FAASIFDNIAYGKEGATEAEVVEAARAANVHGFVS 867
+R I + +E F A Y + E
Sbjct: 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGF-----YASSSSEIEE-----MVERATEIAG 135
Query: 868 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 927
L K V S G +++ IARA++ NP + +LDE TS LD + +++ L+
Sbjct: 136 -LGEKIKDRVST----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILK 190
Query: 928 RLMRGRTTVLV-AHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSR 971
+ + T+LV +H + + + D I ++ +G IVE G+ EL R
Sbjct: 191 QASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 5e-27
Identities = 56/253 (22%), Positives = 114/253 (45%), Gaps = 22/253 (8%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+ K++ + + + S G+ ++G +G+GK+T + +I P++G V
Sbjct: 16 VVVKDLRKRIGKKEIL---KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENI-----LYGKPEATMAEVEAAAS 213
+ ++ + +R I + +E + +E + Y + + E
Sbjct: 73 TVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEE------ 125
Query: 214 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 273
+ G ++ +R S G +++ IARA++ NP++ +LDE TS LD +
Sbjct: 126 --MVERATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLN 181
Query: 274 ESIVQEALDRLMVGRTTVVV-AHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAKAGAYA 331
V++ L + T++V +H + + + D +A+I G +VETGT EEL + A
Sbjct: 182 AREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN 241
Query: 332 SLIRFQEMVRNRD 344
F+E+V+ +
Sbjct: 242 IEEVFEEVVKCSE 254
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 107 bits (271), Expect = 1e-26
Identities = 38/228 (16%), Positives = 90/228 (39%), Gaps = 35/228 (15%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+E+R + Y D V + + I G G +G GK++++ I + P G++
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIA-----YGKEGATEA--EVVEA 856
+ +G I ++ + KI + +E + S+ D + YG + + +E+
Sbjct: 67 IYNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 857 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 916
++ + +LS G +R+ +A +L N I +LD+ A+D
Sbjct: 122 VEVLDLKKKLG---------------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166
Query: 917 ESECVLQEALERLMR-GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQG 963
+S+ + +++ +++ ++ + + D +
Sbjct: 167 DSKHKVLKSILEILKEKGIVIISSREELSY--CDVNENLHKYSTKIDK 212
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 99.1 bits (248), Expect = 1e-23
Identities = 38/226 (16%), Positives = 91/226 (40%), Gaps = 37/226 (16%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E ++++ Y D + ++ G V G +G GK+T++ I + P G +
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENI-----LYGKP--EATMAEVEAA 211
+ + V I ++ +I + +E + ++ + + LYG + + + +
Sbjct: 67 IYNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 212 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271
+ + +LS G +R+ +A +L N +I +LD+ A+D
Sbjct: 122 VEVLDLKKKLG---------------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166
Query: 272 GSESIVQEALDRLMVGRTTVVVA--HRLSTIRNVDTVAVIQQGQVV 315
S+ V +++ ++ + V+++ LS D + +
Sbjct: 167 DSKHKVLKSILEILKEKGIVIISSREELSY---CDVNENLHKYSTK 209
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 84/248 (33%), Positives = 130/248 (52%), Gaps = 44/248 (17%)
Query: 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
EI+L ++ + + + NL+I+ G+ AL+G SGSGKS+++ I Y PT+GK
Sbjct: 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 804 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG----KEGATE--AEVVEA 856
+ D KD+ L K R +GLV Q AL+ +++ NIA+ K E +V E
Sbjct: 60 IYFDEKDVTELPPKD-R-NVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREV 117
Query: 857 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 916
A+ ++ ++ P QLSGGQ+QR+AIARA++K P +LLLDE S LDA
Sbjct: 118 AKMLHIDKLLNRYPW-----------QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Query: 917 E------SECVLQEALERLMRGRTTVLVAH------RLSTIRGVDCIGVVQDGRIVEQGS 964
+E L+ + L G TTV V H ++ D I V+++G I++ G+
Sbjct: 167 LLRLEVRAE--LKRLQKEL--GITTVYVTHDQAEALAMA-----DRIAVIREGEILQVGT 217
Query: 965 HSELVSRP 972
E+ +P
Sbjct: 218 PDEVYYKP 225
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 1e-17
Identities = 57/180 (31%), Positives = 91/180 (50%), Gaps = 23/180 (12%)
Query: 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
I+ +N+ + + + ++ G+ +A++G SGSGKST++ I Y P +G
Sbjct: 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 159 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYG-----KPEATMAE-VEAA 211
+ D D+ L + R+ +GLV Q AL+ T+ +NI + P + + V
Sbjct: 60 IYFDEKDVTELPPK-DRN-VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREV 117
Query: 212 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271
A + + P QLSGGQ+QR+AIARA++K P++LLLDE S LDA
Sbjct: 118 AKMLHIDKLLNRYPW-----------QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 5e-22
Identities = 70/252 (27%), Positives = 115/252 (45%), Gaps = 52/252 (20%)
Query: 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
I + ++ + V + ++ G+ AL+G SG GK++ + ++ Y PT+G+
Sbjct: 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 804 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG----KEGATE--AEVVEA 856
+ D + + K R ++G+V Q AL+ ++F+NIA+ + E VVE
Sbjct: 60 IYFDDVLVNDIPPKY-R-EVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEI 117
Query: 857 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 916
AR + + P QLSGGQ+QR+A+ARA++K P +LL DE S LDA
Sbjct: 118 ARKLLIDNLLDRKPT-----------QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA 166
Query: 917 ESECVLQEALERLMR----------GRTTVLVAH------RLSTIRGVDCIGVVQDGRIV 960
L +MR G T+V V H ++ I V G++V
Sbjct: 167 --------NLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMA-----SRIAVFNQGKLV 213
Query: 961 EQGSHSELVSRP 972
+ G+ E+ P
Sbjct: 214 QYGTPDEVYDSP 225
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 7e-15
Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 23/180 (12%)
Query: 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
+I N+ + V S G+ VA++G SG GK+T + ++ Y P +G
Sbjct: 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 159 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYG-----KPEATMAE-VEAA 211
+ D+V + + + R+ +G+V Q AL+ T+ ENI + + + + V
Sbjct: 60 IYFDDVLVNDIPPK-YRE-VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEI 117
Query: 212 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271
A + + P QLSGGQ+QR+A+ARA++K PK+LL DE S LDA
Sbjct: 118 ARKLLIDNLLDRKPT-----------QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA 166
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 1e-21
Identities = 72/255 (28%), Positives = 117/255 (45%), Gaps = 58/255 (22%)
Query: 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSV---IALIERFYDPT 800
E++L ++ + + NL I+ G+ L+G SG GK++ IA +E +PT
Sbjct: 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE---EPT 64
Query: 801 AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG----KEGATE--AEV 853
G++ +D+ L K R I +V Q A++ ++++NIA+ K E V
Sbjct: 65 EGRIYFGDRDVTYLPPKD-R-NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV 122
Query: 854 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 913
AA + ++ P QLSGGQ+QR+A+ARA++ P +LL+DE S
Sbjct: 123 RWAAELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSN 171
Query: 914 LDAESECVLQEALERLMR----------GRTTVLVAH------RLSTIRGVDCIGVVQDG 957
LDA+ L MR TT+ V H + D I V+ G
Sbjct: 172 LDAK--------LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG-----DRIAVMNRG 218
Query: 958 RIVEQGSHSELVSRP 972
++++ GS +E+ RP
Sbjct: 219 QLLQIGSPTEVYLRP 233
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 1e-14
Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 23/180 (12%)
Query: 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
++ +N+T + + ++ G+ + ++G SG GK+T + +I +P G
Sbjct: 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 159 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYG-----KPEATMAE-VEAA 211
+ + D+ L + R+ I +V Q A++ T+ ENI + P+ + + V A
Sbjct: 68 IYFGDRDVTYLPPK-DRN-ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 125
Query: 212 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271
A + P QLSGGQ+QR+A+ARA++ P +LL+DE S LDA
Sbjct: 126 AELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 174
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 3e-21
Identities = 68/255 (26%), Positives = 117/255 (45%), Gaps = 52/255 (20%)
Query: 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSV---IALIERFYDPT 800
+ L V + +V ++ +L ++ G+ L+G SG GK++ IA +E +P+
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE---EPS 56
Query: 801 AGKVMIDGKDI-RRLNLKSLRLK---IGLVQQEPALFA-ASIFDNIAYG----KEGATE- 850
G++ I K + + K I +V Q AL+ +++DNIA+ K E
Sbjct: 57 RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEI 116
Query: 851 -AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 909
V E A + ++ P +LSGGQ+QR+A+ RA+++ P + L+DE
Sbjct: 117 DQRVREVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDE 165
Query: 910 ATSALDAE------SECVLQEALERLMRGRTTVLVAH------RLSTIRGVDCIGVVQDG 957
S LDA+ +E L++ +L G TT+ V H + D I V+ G
Sbjct: 166 PLSNLDAKLRVRMRAE--LKKLQRQL--GVTTIYVTHDQVEAMTMG-----DRIAVMNRG 216
Query: 958 RIVEQGSHSELVSRP 972
+ + GS E+ +P
Sbjct: 217 VLQQVGSPDEVYDKP 231
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 2e-14
Identities = 46/185 (24%), Positives = 84/185 (45%), Gaps = 27/185 (14%)
Query: 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
+ +V + +V R+ S+ G+ + ++G SG GK+T + +I +P+ G
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 159 VLLDNVDIKTLQLRWL-----RDQIGLVNQEPALFAT-TILENILYG-----KPEATMAE 207
+ + + + + RD I +V Q AL+ T+ +NI + P + +
Sbjct: 60 IYIGDKLVADPEKGIFVPPKDRD-IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ 118
Query: 208 -VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEAT 266
V A + P +LSGGQ+QR+A+ RA+++ P++ L+DE
Sbjct: 119 RVREVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDEPL 167
Query: 267 SALDA 271
S LDA
Sbjct: 168 SNLDA 172
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 9e-20
Identities = 61/231 (26%), Positives = 100/231 (43%), Gaps = 44/231 (19%)
Query: 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI- 178
SI G ++G +GSGKST++++I F + G V +N DI + ++
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE----PAELY 80
Query: 179 --GLVN--QEPALFAT-TILENILYG-------------KPEATMAEVEAAASAANAHSF 220
G+V Q P T+LEN+L G + E E A F
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 221 ITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG---SESIV 277
+ L S + +LSGGQ + + I RA++ NPK++++DE AG +
Sbjct: 141 LKL-----SHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPI----AGVAPGLA-- 189
Query: 278 QEALDRLMV-----GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEE 322
+ ++ G T +++ HRL + N D + V+ GQ++ G EE
Sbjct: 190 -HDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 53/231 (22%), Positives = 100/231 (43%), Gaps = 36/231 (15%)
Query: 765 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL---------- 814
++ + G ++G +GSGKS++I +I F G+V + KDI
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84
Query: 815 -----NLKSLR-------LKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANV 862
+ L+ L IG + + + + K E E+VE +A +
Sbjct: 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFY-----KKWIPKEEEMVE--KAFKI 137
Query: 863 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 922
F+ L + Y G +LSGGQ + + I RA++ NP ++++DE + + +
Sbjct: 138 LEFLK-LSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI 192
Query: 923 QEALERL-MRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSR 971
+ L +G T +++ HRL + D + V+ +G+I+ +G E +
Sbjct: 193 FNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 7e-19
Identities = 79/257 (30%), Positives = 115/257 (44%), Gaps = 60/257 (23%)
Query: 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSV---IALIERFYDPT 800
++L++V A+ +VVV KD NL I G+ VG SG GKS++ IA +E T
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE---TIT 56
Query: 801 AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE--GATEAE----V 853
+G + I K + R +G+V Q AL+ S+ +N+++G + GA + V
Sbjct: 57 SGDLFIGEKRMNDTPPAE-R-GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV 114
Query: 854 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 913
+ A + + P LSGGQ+QR+AI R ++ P++ LLDE S
Sbjct: 115 NQVAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163
Query: 914 LDAESECVLQEALERLMR----------GRTTVLVAH------RLSTIRGVDCIGVVQDG 957
LDA AL MR GRT + V H L+ D I V+ G
Sbjct: 164 LDA--------ALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLA-----DKIVVLDAG 210
Query: 958 RIVEQ-GSHSELVSRPD 973
R+ Q G EL P
Sbjct: 211 RV-AQVGKPLELYHYPA 226
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 3e-10
Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 29/183 (15%)
Query: 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLI---ERFYDPN 155
+++ +NVT ++ +V++ +D ++ G+ V VG SG GKST++ +I E
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE---TIT 56
Query: 156 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG-----KPEATMAE-V 208
+G + + + R +G+V Q AL+ ++ EN+ +G + + + V
Sbjct: 57 SGDLFIGEKRMNDTPPA-ERG-VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV 114
Query: 209 EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSA 268
A + P LSGGQ+QR+AI R ++ P + LLDE S
Sbjct: 115 NQVAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163
Query: 269 LDA 271
LDA
Sbjct: 164 LDA 166
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 85.5 bits (211), Expect = 5e-17
Identities = 46/200 (23%), Positives = 77/200 (38%), Gaps = 31/200 (15%)
Query: 745 IELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
E + S ++ LR++ + + G +G GKS+++ I A
Sbjct: 431 DEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAI-------AN 483
Query: 803 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA--SIFDNIAYGKEGATEAEVVEAARAA 860
+DG + + V+ + + S+ D + E +
Sbjct: 484 G-QVDGFPTQE------ECRTVYVEHDIDGTHSDTSVLDFV---FESGVGTKE-AIKDKL 532
Query: 861 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 920
GF P+ LSGG K ++A+ARAVL+N ILLLDE T+ LD +
Sbjct: 533 IEFGF---TDEMIAMPISA----LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
Query: 921 VLQEALERLMRGRTTVLVAH 940
L L G T++ ++H
Sbjct: 586 WLVNYLNTC--GITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 79.3 bits (195), Expect = 4e-15
Identities = 57/305 (18%), Positives = 107/305 (35%), Gaps = 40/305 (13%)
Query: 60 LGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFR 119
+ F K A L E K+ I N ++ ++ + +Y ++ +
Sbjct: 396 MTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI---LLN 452
Query: 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179
+ + + G +G GKST++ I G +
Sbjct: 453 KTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD--GFPTQEECRT------------V 498
Query: 180 LVNQEPALFAT--TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGV 237
V + + ++L+ + E+ + EA F + +
Sbjct: 499 YVEHDIDGTHSDTSVLDFVF----ESGVGTKEAIKDKLIEFGF---TDEMIAMPISA--- 548
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRL 297
LSGG K ++A+ARA+L+N ILLLDE T+ LD + + + L+ G T++ ++H
Sbjct: 549 -LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISHDS 605
Query: 298 STIRNVDTVAV-IQQGQVVE-TG---THEELIAKAGAYASLIRFQEMVRNRDFANPSTRR 352
+ NV + + ++ + G + A AY L F P
Sbjct: 606 VFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEEL---SNTDLEFKFPEPGYLE 662
Query: 353 SRSTR 357
T+
Sbjct: 663 GVKTK 667
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 1e-11
Identities = 38/243 (15%), Positives = 85/243 (34%), Gaps = 12/243 (4%)
Query: 719 FSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQAL 778
F+ ++ P + +T + + + K F + G + +
Sbjct: 746 FAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIE---GTPRRI 802
Query: 779 VGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIF 838
G K E + M + + +++ + + G + + + A +
Sbjct: 803 AGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVD 862
Query: 839 DNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 898
A E ++ G + + LSGGQK ++ +A
Sbjct: 863 MKEALASGQFRPLTRKEIEEHCSMLGLDP--EIVSHSRIR----GLSGGQKVKLVLAAGT 916
Query: 899 LKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDG 957
+ P +++LDE T+ LD +S L +AL+ +++ H + + + + V+DG
Sbjct: 917 WQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDG 974
Query: 958 RIV 960
R+
Sbjct: 975 RMT 977
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 4e-09
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 238 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRL 297
LSGGQK ++ +A + P +++LDE T+ LD S + +AL +++ H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSA 958
Query: 298 STIRNV-DTVAVIQQGQVV 315
+N+ + V ++ G++
Sbjct: 959 EFTKNLTEEVWAVKDGRMT 977
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 6e-06
Identities = 22/189 (11%), Positives = 55/189 (29%), Gaps = 16/189 (8%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+++ +++F YP D N + A++G +G+GKS++I ++ PT+G+V
Sbjct: 672 VKVTNMEFQYPG-TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHG 864
+I ++Q S D + +
Sbjct: 731 YTHEN-----------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANR 779
Query: 865 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 924
++ + + + G ++ I + +
Sbjct: 780 QINENDAEAMNKIFK----IEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWV 835
Query: 925 ALERLMRGR 933
+ +
Sbjct: 836 PMMSVDNAW 844
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 15/109 (13%)
Query: 59 NLGAFSKGKAA-------GYKLMEIIKQKPSIIQDP-TNGRCLDEVNGNIEFKNVTFSYP 110
N F K A +E +P ++ T + + +V N+ F YP
Sbjct: 629 NFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKV------TNMEFQYP 682
Query: 111 SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
D + +AV+G +G+GKST+++++ P +G V
Sbjct: 683 G-TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 77.1 bits (191), Expect = 8e-16
Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 30/238 (12%)
Query: 101 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL 160
E +++ Y + + + P G+ V ++G +G+GK+T +S I G ++
Sbjct: 8 EVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 161 LDNVDIKTLQLRWL-RDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAH 218
+ DI + R I LV + +F T+ EN++ G A + +
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMG---AYNRKDKEGIKRDLEW 121
Query: 219 SFITLLPNGYSTQVGERGVQ----LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274
F +L P ++ ER Q LSGG++Q +AI RA++ PK+L++DE + L +
Sbjct: 122 IF-SLFP-----RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL---AP 172
Query: 275 SIVQE---ALDRLMVGRTTVVV----AHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325
+V E + ++ TT+++ A ++ V++ GQ+V G EL+
Sbjct: 173 ILVSEVFEVIQKINQEGTTILLVEQNALG--ALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 2e-15
Identities = 62/251 (24%), Positives = 114/251 (45%), Gaps = 50/251 (19%)
Query: 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 805
E++ + Y + K +L++ GQ L+GA+G+GK++ ++ I GK++
Sbjct: 8 EVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 806 IDGKDIRRLNLKSL-RLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVH 863
+G+DI + R+ I LV + +F ++++N+ G A +
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMG-----------AYNRKDKE 113
Query: 864 GFVSALPNAYKT-PV-GERGVQ----LSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 917
G L + P ER Q LSGG++Q +AI RA++ P +L++DE + L
Sbjct: 114 GIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL--- 170
Query: 918 SECVLQE---ALERLMRGRTTVL-----------VAHRLSTIRGVDCIG-VVQDGRIVEQ 962
+ ++ E ++++ + TT+L VAH G V++ G+IV +
Sbjct: 171 APILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHY----------GYVLETGQIVLE 220
Query: 963 GSHSELVSRPD 973
G SEL+
Sbjct: 221 GKASELLDNEM 231
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 1e-10
Identities = 66/351 (18%), Positives = 102/351 (29%), Gaps = 117/351 (33%)
Query: 71 YK-LMEIIKQKPSIIQDPTNGR-----CLDEV-NGNIEFK--NVTFSYPSRPDVII---- 117
YK LM IK + + P+ D + N N F NV+ R +
Sbjct: 91 YKFLMSPIKTEQ---RQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-----RLQPYLKLRQ 142
Query: 118 ----FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW 173
R K V + G GSGK+ V + Y +D ++ W
Sbjct: 143 ALLELRP-------AKNVLIDGVLGSGKTWVALDVCLSYKV---QCKMDF------KIFW 186
Query: 174 LRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVG 233
L + N + +L+ +LY + PN T
Sbjct: 187 LN--LKNCNSPETVLE--MLQKLLY-----------------------QIDPNW--TSRS 217
Query: 234 ERGVQLSGGQKQRIAIARAMLKN-------PKILL-LDEATSALDAGSESIVQEALD--- 282
+ + K RI +A L+ LL L + + A +
Sbjct: 218 DHSSNI----KLRIHSIQAELRRLLKSKPYENCLLVLL------NVQNAKAW-NAFNLSC 266
Query: 283 RLMVGRTT--VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEE---LIAKAGAYASLIRFQ 337
++++ TT V LS T I T T +E L+ K Y R Q
Sbjct: 267 KILL--TTRFKQVTDFLS----AATTTHISLDHHSMTLTPDEVKSLLLK---YLD-CRPQ 316
Query: 338 EMVRNRDFANP----------STRRSRSTRLSHSLSTKSLSLRSGSLRNLS 378
++ R NP + H K ++ SL L
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 8e-09
Identities = 103/651 (15%), Positives = 168/651 (25%), Gaps = 214/651 (32%)
Query: 390 EMVSNAETDR--KNPAPDGYFLRLLK--LNAPEWPYSIMGAIGSVLS---GFIGPTFAIV 442
++S E D + LRL L+ E + VL F+
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK--FVEEVLRINYKFLMSPIKTE 101
Query: 443 M--ACMIEVFY--YRNP------------------------ASMERKTKEFVFIY--IGA 472
M+ Y R+ A +E + + V I +G+
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 473 G---LYAVVA--YLIQHYF-FSI----MGENLTTRVRRMMLAAILRNEVGWFDEEEHNSS 522
G + V Y +Q F I + + ML +L + +SS
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 523 LVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYP--LLVL 580
+ R+ +I + +L++ Y LLVL
Sbjct: 222 NIKLRI--------HSIQAELRRLLKSKP-----------------------YENCLLVL 250
Query: 581 ANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQ 640
N V N + AFN KIL +
Sbjct: 251 LN----------------------------VQNAKAWNAFNLSCKIL--------L---- 270
Query: 641 TLR-----RSLTAGILFGIS----QFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVL 691
T R L+A IS L E L K +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-------------LLKYLDC---- 313
Query: 692 VVTANSVAETVSLAPEIIRGGESVGSVFSTL--DRSTRIDP-DDPDAEPVETIRGEIELR 748
L E++ S+ + D D + + + TI E L
Sbjct: 314 --------RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-ESSLN 364
Query: 749 HVDFAYPSR--PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIA-------LIERFYDP 799
++ A + + VF + I + V+ L+E+ P
Sbjct: 365 VLEPAEYRKMFDRLSVFPP-SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK--QP 421
Query: 800 TAGKVMIDGKDIR----RLNLKSLRLKIGLVQQ-------EPALFAASIFDN-----IAY 843
+ I + N +L I V + D I +
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSI--VDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 844 GKEGATEAEVVEAARAA--NVHGFVSALPNAYKTPVGERGVQLSGGQ-----KQRI---- 892
+ E + R + F+ T G L+ Q K I
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFR-FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
Query: 893 --------AIARAVLKNPAILLLDEATS----ALDAESECVLQEALERLMR 931
AI + K L+ + T AL AE E + +EA +++ R
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 2e-07
Identities = 63/485 (12%), Positives = 128/485 (26%), Gaps = 161/485 (33%)
Query: 71 YKLMEIIKQKP-SIIQDPTNGRCLDEV-NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAG 128
+L + K ++Q + ++EV N +F R P+
Sbjct: 65 LRLFWTLLSKQEEMVQ-----KFVEEVLRINYKFLMSPIKTEQRQ------------PSM 107
Query: 129 KTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD-NV----DIKTLQ--LRWLRDQIGLV 181
T + +R Y N V NV L+ L LR ++
Sbjct: 108 MTR-----------MYIEQRDRLY--NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 182 NQEPALFATTILENILYGKPEATMA----EVEAAASAANAHSFITLLPNGYSTQVGERGV 237
+ G + A ++ + +
Sbjct: 155 ---------------IDG-----VLGSGKTW-VALDVCLSYKVQCKMDF---------KI 184
Query: 238 Q-LSGGQKQRIAIARAMLKNPKILL--LDEATSALDAGSESI------VQEALDRLMVGR 288
L+ ML+ LL +D ++ S +I +Q L RL+ +
Sbjct: 185 FWLNLKNCNSPETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 289 TTVVVAHRLSTIRNVDTVAVIQ----QGQVVETGTHEELIAKAGAYASLIRFQEMVRNRD 344
+ L + NV +++ T T + + F
Sbjct: 242 ---PYENCLLVLLNVQNAKAWNAFNLSCKILLT-T---------RFKQVTDFLSAATTTH 288
Query: 345 FANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAP 404
+ + + SL K L R L E+++ NP
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-------------EVLTT------NP-- 327
Query: 405 DGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKE 464
R L + I + + + +++ + T
Sbjct: 328 -----RRLSI------------IAESIRDGL---------ATWD--NWKHVNCDKLTTI- 358
Query: 465 FVFIYIGAGLYAVVAYLIQHYF--FSIMGE--NLTTRVRRMMLAAILRNEVGWFDEEEHN 520
I + L + + F S+ ++ T + ++ +++++V + H
Sbjct: 359 -----IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 521 SSLVA 525
SLV
Sbjct: 414 YSLVE 418
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 1e-07
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 883 QLSGGQKQ------RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTT 935
LSGG++ R+A++ + ++L+LDE T LD E L +ER ++
Sbjct: 248 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 307
Query: 936 VLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 970
+LV+H D + + + S E+VS
Sbjct: 308 ILVSHDEELKDAADHVIRI---SLENGSSKVEVVS 339
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 6e-07
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 13/91 (14%)
Query: 238 QLSGGQKQ------RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTT 290
LSGG++ R+A++ + +L+LDE T LD + ++R +
Sbjct: 248 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 307
Query: 291 VVVAHRLSTIRNVDTVAVIQ------QGQVV 315
++V+H D V I + +VV
Sbjct: 308 ILVSHDEELKDAADHVIRISLENGSSKVEVV 338
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 883 QLSGGQKQRIAIA------RAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTT 935
LSGG++ + +A + ++L+LDE T LD E L +ER ++
Sbjct: 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 116
Query: 936 VLVAHRLSTIRGVDCI 951
+LV+H D +
Sbjct: 117 ILVSHDEELKDAADHV 132
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 3e-07
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 13/91 (14%)
Query: 238 QLSGGQKQRIAIA------RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTT 290
LSGG++ + +A + +L+LDE T LD + ++R +
Sbjct: 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 116
Query: 291 VVVAHRLSTIRNVDTV------AVIQQGQVV 315
++V+H D V + +VV
Sbjct: 117 ILVSHDEELKDAADHVIRISLENGSSKVEVV 147
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 2e-07
Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 64/243 (26%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKS---SVIALIERFYDPTAGKVMIDGKDIRRL------ 814
K NL + G+ AL+G +G+GKS ++A Y G++++DG++I L
Sbjct: 20 KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE-YTVERGEILLDGENILELSPDERA 78
Query: 815 ------------------NLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVE- 855
LRL + + + E+++
Sbjct: 79 RKGLFLAFQYPVEVPGVTIANFLRLALQAKLGRE-------VGVAEFWTKVKKALELLDW 131
Query: 856 ----AARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT 911
+R N GF SGG+K+R I + ++ P +LDE
Sbjct: 132 DESYLSRYLNE-GF-------------------SGGEKKRNEILQLLVLEPTYAVLDETD 171
Query: 912 SALDAESECVLQEALERLMR-GRTTVLVAH--RLSTIRGVDCIGVVQDGRIVEQGSHSEL 968
S LD ++ V+ + + +++ H R+ D + V+ DGR+V G EL
Sbjct: 172 SGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGG-PEL 230
Query: 969 VSR 971
Sbjct: 231 ALE 233
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 5e-05
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 240 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV-GRTTVVVAH--R 296
SGG+K+R I + ++ P +LDE S LD + +V ++ + +V+ H R
Sbjct: 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR 204
Query: 297 LSTIRNVDTVAVIQQGQVVETGTHE 321
+ D V V+ G+VV TG E
Sbjct: 205 ILNYIQPDKVHVMMDGRVVATGGPE 229
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 59/240 (24%), Positives = 97/240 (40%), Gaps = 54/240 (22%)
Query: 764 KDFNLRIRAGQSQALVGASGSGKS---SVIALIERFYDPTAGKVMIDGKDIRRL------ 814
+ +L + G+ A++G +GSGKS + +A E Y+ T G V GKD+ L
Sbjct: 37 RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDLLALSPEDRA 95
Query: 815 ------------------NLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVE- 855
N L+ + V+ FD +E ++ E
Sbjct: 96 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPED 155
Query: 856 -AARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 914
R+ NV GF SGG+K+R I + + P + +LDE+ S L
Sbjct: 156 LLTRSVNV-GF-------------------SGGEKKRNDILQMAVLEPELCILDESDSGL 195
Query: 915 DAESECVLQEALERLMR-GRTTVLVAH--RLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 971
D ++ V+ + + L R+ ++V H R+ D + V+ GRIV+ G LV +
Sbjct: 196 DIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD-FTLVKQ 254
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 5e-06
Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 37/229 (16%)
Query: 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLI---ERFYDPNAGHVLLDNVDIKTLQLRW 173
I R S+ G+ A++G +GSGKST+ + + E Y+ G V D+ L
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDLLALSP-E 92
Query: 174 LRDQIG--LVNQEP--------ALFATTILENILYGKPEATMAEVEAAASAANAHSFITL 223
R G + Q P F T L + + + T+ + F L
Sbjct: 93 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETL----------DRFDFQDL 142
Query: 224 LPNGYSTQVG------ERGVQ--LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 275
+ + R V SGG+K+R I + + P++ +LDE+ S LD +
Sbjct: 143 M-EEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALK 201
Query: 276 IVQEALDRLMV-GRTTVVVAH--RLSTIRNVDTVAVIQQGQVVETGTHE 321
+V + ++ L R+ ++V H R+ D V V+ QG++V++G
Sbjct: 202 VVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 250
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 7/83 (8%)
Query: 238 QLSGGQKQRIAIA-------RAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTT 290
LSGG++ +A++ + + ++LDE T LD + + E ++
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 291 VVVAHRLSTIRNVDTVAVIQQGQ 313
+++ H D + +++
Sbjct: 340 IIITHHRELEDVADVIINVKKDG 362
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Query: 883 QLSGGQKQRI------AIARAVLKNPA-ILLLDEATSALDAESECVLQEALERLMRGRTT 935
LSGG++ + AIA A++ N ++LDE T LD L E ++
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 936 VLVAHRLSTIRGVDC-IGVVQDGRIVEQGSHSEL 968
+++ H D I V +DG S ++
Sbjct: 340 IIITHHRELEDVADVIINVKKDG----NVSKVKI 369
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 987 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 100.0 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.98 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.98 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.97 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.96 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.96 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.96 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.96 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.96 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.95 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.95 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.95 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.93 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.93 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.93 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.92 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.91 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.91 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.9 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.9 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.9 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.9 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.89 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.89 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.88 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.87 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.87 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.86 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.85 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.85 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.84 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.83 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.83 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.83 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.83 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.83 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.83 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.83 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.82 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.82 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.81 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.81 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.8 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.8 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.8 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.8 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.79 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.78 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.77 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.77 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.77 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.76 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.75 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.75 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.75 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.74 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.74 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.74 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.74 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.74 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.73 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.73 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.71 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.71 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.71 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.71 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.69 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.69 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.69 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.69 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.68 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.68 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.68 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.67 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.67 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.67 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.67 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.67 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.67 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.66 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.66 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.66 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.66 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.65 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.65 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.65 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.65 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.65 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.64 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.64 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.63 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.61 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.61 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.61 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.61 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.61 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.6 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.6 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.6 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.6 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.59 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.57 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.56 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.55 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.55 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.55 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.53 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.53 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.52 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.52 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.52 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.52 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.51 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.51 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.5 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.49 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.49 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.48 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.46 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.45 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.42 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.42 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.4 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.38 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.38 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.37 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.33 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.32 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.32 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.31 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.31 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.3 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.3 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.3 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.29 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.29 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.28 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.28 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.28 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.28 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.26 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.25 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.25 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.24 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.24 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.23 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.23 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.22 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.2 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.16 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.14 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.13 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.12 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.12 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.12 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.12 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.11 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.08 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.08 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.04 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.03 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.99 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.96 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.95 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.95 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.94 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.94 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.9 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.88 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.84 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.83 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.83 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.82 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.82 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.81 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.8 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.8 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.8 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.76 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.75 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.75 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.75 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.75 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.75 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.74 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.73 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.73 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.72 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.72 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.71 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.7 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.69 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.67 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.67 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.66 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.66 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.66 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.65 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.63 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.63 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.61 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.6 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.6 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.59 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.59 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.56 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.54 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.47 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.43 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.42 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.39 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.37 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.37 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.37 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.34 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.32 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.3 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.3 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.27 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.27 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.25 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.25 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.22 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.22 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.22 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.21 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.21 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.19 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.19 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.18 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.18 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.16 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.13 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.13 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.13 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.13 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.09 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.09 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.07 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.07 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.06 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 98.02 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.01 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.01 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.0 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.99 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.97 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.95 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.94 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.92 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.87 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.82 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.79 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.77 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.74 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.74 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.72 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.7 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.69 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.68 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.66 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.65 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.64 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.62 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.62 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.59 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.54 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.54 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.52 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.51 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.47 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.47 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.47 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.46 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.4 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.38 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.38 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.35 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.33 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.33 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.32 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.29 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.28 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.26 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.26 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.25 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.25 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.23 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.23 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.23 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.22 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.22 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.19 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.18 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.17 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.15 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.15 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.14 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.13 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.12 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.1 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.08 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.07 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.05 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.04 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.04 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.04 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.04 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.04 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.02 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.02 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.99 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.98 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.97 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.95 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.94 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.92 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.9 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.89 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.89 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.82 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.79 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.78 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.78 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.77 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.76 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.73 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.72 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.71 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.71 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.69 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 96.64 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.63 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.63 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.62 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.58 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.56 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.55 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.53 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.51 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.48 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.45 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.45 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.44 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.42 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.41 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.41 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.4 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.4 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.38 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.38 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.32 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.31 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.31 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.29 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.28 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.27 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.24 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.22 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.17 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.16 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.14 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.12 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.1 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.1 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.07 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.04 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.04 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.03 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 95.95 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.94 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.89 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.87 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.86 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.84 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.8 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.8 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.79 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.79 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.78 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.77 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.75 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.72 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 95.71 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 95.69 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.67 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.67 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.67 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.66 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.66 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.65 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.65 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 95.59 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 95.55 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.52 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-169 Score=1635.02 Aligned_cols=978 Identities=38% Similarity=0.636 Sum_probs=823.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 001980 4 GLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSI 83 (987)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~ 83 (987)
+...++..++..+++++++|+|++++.+|.+++|.+++++.++.....|+..++..+..+.++.+|++|++++++.+++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 399 (1321)
T 4f4c_A 320 GISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVI 399 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 34566777888889999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred CCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 001980 84 IQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163 (987)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g 163 (987)
+........+...++.|+++||+|+||++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||
T Consensus 400 ~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG 479 (1321)
T 4f4c_A 400 DSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDG 479 (1321)
T ss_dssp SCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETT
T ss_pred cccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCC
Confidence 33222222233445689999999999977777899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHH
Q 001980 164 VDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ 243 (987)
Q Consensus 164 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 243 (987)
+|+++++.+++|++||||+|+||||++||+|||+||.|+.++++++++|+.++++++++.+|+|++|.+||+|.+|||||
T Consensus 480 ~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQ 559 (1321)
T 4f4c_A 480 VDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQ 559 (1321)
T ss_dssp EETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHH
T ss_pred ccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHH
Q 001980 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 244 kqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 323 (987)
||||+||||+|+||+|||||||||+||+++++.++++|.++.+|+|+|+||||++.++.||+|++|++|+|+++|+|+||
T Consensus 560 kQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL 639 (1321)
T 4f4c_A 560 KQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRAL 639 (1321)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHhhhccccC---CCCccc--ccccccccccccccccccccccccccccc-------cC-CC-C---
Q 001980 324 IAKAGAYASLIRFQEMVRNRDFA---NPSTRR--SRSTRLSHSLSTKSLSLRSGSLRNLSYSY-------ST-GA-D--- 386 (987)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~-~--- 386 (987)
++++|.|++++..|......+.. ....+. .............. +............. .. .. +
T Consensus 640 ~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1321)
T 4f4c_A 640 MAQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQA-SEMDDIMNRVRSSTIGSITNGPVIDEKEERI 718 (1321)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCC---------------------------------------------------CCC
T ss_pred HHhhhHHHHHHHhhhccccccccccccccccccccccccccccccccc-ccccchhhhhhccccccccCCcchhHHHhhc
Confidence 99999999999877543221100 000000 00000000000000 00000000000000 00 00 0
Q ss_pred cccccccccccccCCCCCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHH
Q 001980 387 GRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFV 466 (987)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (987)
.........++.+........+++++.+.++.+..++++++++.+.++..+.+.+++..++..+... +........+|.
T Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 797 (1321)
T 4f4c_A 719 GKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGN-PADFLSQGHFWA 797 (1321)
T ss_dssp CCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSC-SSTTTTTHHHHH
T ss_pred cchhHHHHHHHHHHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHH
Confidence 0000000000111222234456677778888888888888888888888898888888887765432 233334456788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001980 467 FIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVI 546 (987)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~ 546 (987)
++|++++++..++.++..+++.+.+.++..++|.++|++++++|++|||..++++|+++||+++|++.++..++..+..+
T Consensus 798 ~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~ 877 (1321)
T 4f4c_A 798 LMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTV 877 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHH
Q 001980 547 LQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKI 626 (987)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~ 626 (987)
+..++.++++++++++++|.+++++++++|+++++.++..+..+....+.....++....+.|+++|+++||+|++++.+
T Consensus 878 ~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~ 957 (1321)
T 4f4c_A 878 ITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTF 957 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHH
T ss_pred HHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHH
Confidence 99999999999999999999999999999998887777665555444445555677778889999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHH--HHHHHHHHHHHHHHHHHHHHHH
Q 001980 627 LSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFS--KVIKVFVVLVVTANSVAETVSL 704 (987)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 704 (987)
.++|.+..+...+..++.....++...+...+.++..++++|+|..++..+..+.+ .++.++.++.....++..+...
T Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1037 (1321)
T 4f4c_A 958 YENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSY 1037 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888888998888899999999999999988876554 3444444444445567777788
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCC
Q 001980 705 APEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGS 784 (987)
Q Consensus 705 ~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGs 784 (987)
..++.+...+++|++++++.+++.+... ...+.++..|.|+|+||+|+||++++.|||+||||+|+|||+|||||||||
T Consensus 1038 ~~~~~~~~~a~~ri~~~l~~~~~~~~~~-~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGs 1116 (1321)
T 4f4c_A 1038 FPEYAKATFAGGIIFGMLRKISKIDSLS-LAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGC 1116 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSSCTTC-CCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTS
T ss_pred HHHHHHHHHHHHHHHHHhhCcccCCCcc-CCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCC
Confidence 8899999999999999998876654322 223345678999999999999988777899999999999999999999999
Q ss_pred ChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCC--CCCCHHHHHHHHHHcCc
Q 001980 785 GKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK--EGATEAEVVEAARAANV 862 (987)
Q Consensus 785 GKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~--~~~sd~ei~~al~~a~l 862 (987)
|||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+|||||||.+|. ++++|+|+|+||+.+++
T Consensus 1117 GKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l 1196 (1321)
T 4f4c_A 1117 GKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANI 1196 (1321)
T ss_dssp STTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTC
T ss_pred hHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999873 57899999999999999
Q ss_pred hhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCc
Q 001980 863 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRL 942 (987)
Q Consensus 863 ~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl 942 (987)
++||.++|+||||+|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.||++|++.+++||+|+|||||
T Consensus 1197 ~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRL 1276 (1321)
T 4f4c_A 1197 HNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRL 1276 (1321)
T ss_dssp HHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSS
T ss_pred hHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhhhc
Q 001980 943 STIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHH 985 (987)
Q Consensus 943 ~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q~~ 985 (987)
+|+++||||+|||+|||+|+|+|+||+++ +|.|++||+.|..
T Consensus 1277 sTi~~aD~I~Vld~G~IvE~Gth~eLl~~-~g~y~~L~~~Q~~ 1318 (1321)
T 4f4c_A 1277 NTVMNADCIAVVSNGTIIEKGTHTQLMSE-KGAYYKLTQKQMT 1318 (1321)
T ss_dssp STTTTCSEEEEESSSSEEEEECHHHHHHC-C------------
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHHHh
Confidence 99999999999999999999999999998 8999999999864
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-148 Score=1432.09 Aligned_cols=977 Identities=41% Similarity=0.701 Sum_probs=828.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 001980 4 GLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSI 83 (987)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~ 83 (987)
+...++..++..+++++++|+|++++..|.+++|.+++++++++....|+..+...+..+..+..+++|+.++++.+++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 371 (1284)
T 3g5u_A 292 NISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSI 371 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 34556777788888999999999999999999999998888888888899999999999999999999999999876654
Q ss_pred CCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 001980 84 IQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163 (987)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g 163 (987)
+........++...+.|+++|++|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||
T Consensus 372 ~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g 451 (1284)
T 3g5u_A 372 DSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDG 451 (1284)
T ss_dssp SSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETT
T ss_pred CcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 32111112223345679999999999865556799999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHH
Q 001980 164 VDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ 243 (987)
Q Consensus 164 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 243 (987)
+|+++++.+++|++||||+|+|++|++||+|||.+|.++.++++++++++.+++++++..+|+|++|.+|++|.+|||||
T Consensus 452 ~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq 531 (1284)
T 3g5u_A 452 QDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQ 531 (1284)
T ss_dssp EEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHH
T ss_pred EEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHH
Confidence 99999999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHH
Q 001980 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 244 kqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 323 (987)
||||+|||||+++|+|||||||||+||+++++.+.+.++++.+|+|+|+||||++.+..||+|++|++|+|+++|+|+++
T Consensus 532 ~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l 611 (1284)
T 3g5u_A 532 KQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDEL 611 (1284)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHhhhccccCCCCcccccccccccccccccccccccccccccccccC-CCCcccccccccccccCCC
Q 001980 324 IAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYST-GADGRIEMVSNAETDRKNP 402 (987)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 402 (987)
++.++.|.+++..+.................... ........ ............... ........... ++.....
T Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 687 (1284)
T 3g5u_A 612 MREKGIYFKLVMTQTAGNEIELGNEACKSKDEID-NLDMSSKD--SGSSLIRRRSTRKSICGPHDQDRKLST-KEALDED 687 (1284)
T ss_dssp HHTTSHHHHHHHHTC-------------------------------------------------------------CCCC
T ss_pred HhCCCHHHHHHHHhhhcccccccccccccccccc-cccccccc--cccccccccccccccccccccccccch-hhhhhcc
Confidence 9999999888765433211110000000000000 00000000 000000000000000 00000000000 0111111
Q ss_pred CCchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-chhhhhhHHHHHHHHHHHHHHHHHHH
Q 001980 403 APDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNP-ASMERKTKEFVFIYIGAGLYAVVAYL 481 (987)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (987)
.....+++++++.++.|++++++++++++.+.+.+.+++++..+++.+....+ .........|..+|++++++..++.+
T Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 767 (1284)
T 3g5u_A 688 VPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFF 767 (1284)
T ss_dssp CSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233455566666667777788888888888888888888888876654332 22233455678888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 482 IQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAF 561 (987)
Q Consensus 482 ~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 561 (987)
++.+++.+.+.++..++|.++|++++++|++|||.+.+++|++++|+++|++.++..++..+..++..++.+++++++++
T Consensus 768 ~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~ 847 (1284)
T 3g5u_A 768 LQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISL 847 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHH
Q 001980 562 IVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQT 641 (987)
Q Consensus 562 ~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~ 641 (987)
+++|.+++++++++|+++++.++..++.+....+..+........+.|+++|+++||+|++++++.++|.+..+...+..
T Consensus 848 ~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~ 927 (1284)
T 3g5u_A 848 IYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNA 927 (1284)
T ss_dssp SSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888888877777777777777888899999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 642 LRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFST 721 (987)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~ 721 (987)
.+...+.++..++.+.+.++..++.+|+|.+++..+.++++.++.++.++.....++..+......+.+...+++|+.++
T Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 1007 (1284)
T 3g5u_A 928 MKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRI 1007 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999998888888888888888888878888899999999999
Q ss_pred hcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC
Q 001980 722 LDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 801 (987)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~ 801 (987)
++.+++.++..+...++++..|.|+|+||+|+|+++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++
T Consensus 1008 l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~ 1087 (1284)
T 3g5u_A 1008 IEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087 (1284)
T ss_dssp HHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSE
T ss_pred HcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 98766543322222233445789999999999986555579999999999999999999999999999999999999999
Q ss_pred ceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCC--CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCC
Q 001980 802 GKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE--GATEAEVVEAARAANVHGFVSALPNAYKTPVGE 879 (987)
Q Consensus 802 G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~--~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge 879 (987)
|+|.+||+|+++++++++|++|+||||||.+|++||+|||.++.+ ..++++++++++.+++++++.++|+||||++||
T Consensus 1088 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge 1167 (1284)
T 3g5u_A 1088 GSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGD 1167 (1284)
T ss_dssp EEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCST
T ss_pred CEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCC
Confidence 999999999999999999999999999999999999999998865 478999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEE
Q 001980 880 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRI 959 (987)
Q Consensus 880 ~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~i 959 (987)
+|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++..+|+|+|+||||++++.+||||+||++|+|
T Consensus 1168 ~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i 1247 (1284)
T 3g5u_A 1168 KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKV 1247 (1284)
T ss_dssp TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEE
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred EEecChhHHhcCCCchHHHHHHhhhc
Q 001980 960 VEQGSHSELVSRPDGAYSRLLQLQHH 985 (987)
Q Consensus 960 ve~Gt~~eLl~~~~g~f~~l~~~q~~ 985 (987)
+|+|+|+||+++ +|.|++||+.|..
T Consensus 1248 ~~~g~~~~l~~~-~g~y~~l~~~q~~ 1272 (1284)
T 3g5u_A 1248 KEHGTHQQLLAQ-KGIYFSMVSVQAG 1272 (1284)
T ss_dssp EEEECHHHHHHS-CSHHHHHHHHHC-
T ss_pred EEECCHHHHHhC-CCHHHHHHHHHhh
Confidence 999999999997 8999999998854
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-93 Score=923.07 Aligned_cols=580 Identities=36% Similarity=0.577 Sum_probs=530.8
Q ss_pred CCCchHHHHHHHHhCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------------------cchhhhhh
Q 001980 402 PAPDGYFLRLLKLNAPE-WPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRN------------------PASMERKT 462 (987)
Q Consensus 402 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~ 462 (987)
..++.+++++++|..+. +..++++++++++.++..|++.++++.+++.+.... ........
T Consensus 56 ~~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (1321)
T 4f4c_A 56 VVNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDV 135 (1321)
T ss_dssp CSSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHH
T ss_pred ccCCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHH
Confidence 34566788888886653 556677888888889999998888887776542110 01112234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHH
Q 001980 463 KEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADR 542 (987)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~ 542 (987)
..+++.+++++++..++.+++.+++.+.+++...++|.++|++++++|++|||+ +++|++++|+++|++.++..+...
T Consensus 136 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~--~~~G~l~sr~~~D~~~i~~~~~~~ 213 (1321)
T 4f4c_A 136 MNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDT--NHSGTLATKLFDNLERVKEGTGDK 213 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH--TCCTTHHHHHHHHHHHHHHTSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC--CChHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888889999999999999999999999999999999999999996 789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhcc
Q 001980 543 ISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNA 622 (987)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~ 622 (987)
+..++..++.++++++++++++|.+++++++++|+++++.++..++.++..++.+...+.....+.|+++|+++||+|++
T Consensus 214 l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~ 293 (1321)
T 4f4c_A 214 IGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNG 293 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence 99999999999999999999999999999999999999888888888888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 001980 623 QNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETV 702 (987)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (987)
|+.+.++|.+..+...+...+.....++..++..++.++..++++|+|.+++..|.++++.+++++.++.....++..+.
T Consensus 294 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~ 373 (1321)
T 4f4c_A 294 LRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAG 373 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCC
Q 001980 703 SLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGAS 782 (987)
Q Consensus 703 ~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~s 782 (987)
.....+.++..+++|++++++.+++.+........+.+.+|.|+|+||+|+||++++.++|+|+||+|+|||++||||||
T Consensus 374 ~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~s 453 (1321)
T 4f4c_A 374 PQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSS 453 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecC
Confidence 99999999999999999999987665443333334445678999999999999887889999999999999999999999
Q ss_pred CCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCc
Q 001980 783 GSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANV 862 (987)
Q Consensus 783 GsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l 862 (987)
|||||||+++|+|+|+|++|+|.+||+|++++++++||++|+||||||+||+|||||||.+|.++++++++++||+.+++
T Consensus 454 GsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l 533 (1321)
T 4f4c_A 454 GCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANA 533 (1321)
T ss_dssp SSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCc
Q 001980 863 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRL 942 (987)
Q Consensus 863 ~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl 942 (987)
++||+.||+|+||+|||+|.+||||||||||||||++++|+|||||||||+||++||+.|+++|++..+++|+|+||||+
T Consensus 534 ~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrl 613 (1321)
T 4f4c_A 534 EKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRL 613 (1321)
T ss_dssp HHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCT
T ss_pred hhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhhh
Q 001980 943 STIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 943 ~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q~ 984 (987)
+++++||+|+||++|+|+|+|+|+||+++ +|.|++|++.|.
T Consensus 614 s~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 614 STIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQT 654 (1321)
T ss_dssp TTTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhh
Confidence 99999999999999999999999999997 899999998874
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-86 Score=796.25 Aligned_cols=569 Identities=24% Similarity=0.379 Sum_probs=508.2
Q ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 409 LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFS 488 (987)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (987)
++++++.++.++.+++++++.++.+++....++++..+++....... ......+..+++++.++..++.++..++..
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (587)
T 3qf4_A 12 KTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD---FSLVLKTGILMLIVALIGAVGGIGCTVFAS 88 (587)
T ss_dssp CCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667778888888888888888888888888888876543211 112233455556666677788888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001980 489 IMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVS 568 (987)
Q Consensus 489 ~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 568 (987)
+.+.+...++|.++|+++++.|+.||++ +++|++++|+++|++.++..+...+..++..++.+++++++++.++|.++
T Consensus 89 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 166 (587)
T 3qf4_A 89 YASQNFGADLRRDLFRKVLSFSISNVNR--FHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLS 166 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 001980 569 LLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTA 648 (987)
Q Consensus 569 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (987)
+++++++|+++++.++..+..++..++.++..++....+.|+++|+++||+|++++.+.++|.+..+...+...+.....
T Consensus 167 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (587)
T 3qf4_A 167 SVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLI 246 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888877777777788888888899999999999999999999999999999999999888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 001980 649 GILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRI 728 (987)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~ 728 (987)
.+...+..++..+..++++|+|.+++..|.++++.+++++.+......++..+......+.++..+++|+.++++.+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 326 (587)
T 3qf4_A 247 VFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAI 326 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88888888888888889999999999999999999999999998888899999888899999999999999999876543
Q ss_pred CCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 001980 729 DPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808 (987)
Q Consensus 729 ~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG 808 (987)
++.. ...+.++..|.|+|+||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+||
T Consensus 327 ~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g 404 (587)
T 3qf4_A 327 EEAD-NALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDE 404 (587)
T ss_dssp CCCT-TCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESS
T ss_pred CCCC-CccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECC
Confidence 2211 111223456789999999999743 45799999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 809 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 809 ~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
+|+++++.+++|++|+||||||.+|++||+|||.++.+..++++++++++.+++++++..+|+|+||.++++|.+|||||
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGq 484 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQ 484 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHH
T ss_pred EEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHH
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHH
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eL 968 (987)
|||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||||+||++|+|+|+|+|+||
T Consensus 485 rQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el 564 (587)
T 3qf4_A 485 KQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKEL 564 (587)
T ss_dssp HHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hcCCCchHHHHHHhhhc
Q 001980 969 VSRPDGAYSRLLQLQHH 985 (987)
Q Consensus 969 l~~~~g~f~~l~~~q~~ 985 (987)
+++ ++.|+++++.|..
T Consensus 565 ~~~-~~~~~~~~~~~~~ 580 (587)
T 3qf4_A 565 LEH-CKPYREIYESQFG 580 (587)
T ss_dssp HHH-CHHHHHHHHHHC-
T ss_pred HhC-CcHHHHHHHHHhc
Confidence 987 7899999988743
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-86 Score=795.43 Aligned_cols=571 Identities=29% Similarity=0.449 Sum_probs=516.8
Q ss_pred chHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001980 405 DGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQH 484 (987)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (987)
...+++++++.++.++.++.++++.++.+++....++++..+++....... ......++.+++++.++..++.++..
T Consensus 22 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR---FDLLPRYMLILGTIYALTSLLFWLQG 98 (598)
T ss_dssp HHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC---GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888888888888888888888888876543221 12234466677777788888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001980 485 YFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVE 564 (987)
Q Consensus 485 ~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (987)
++....+.++..++|.++|++++++|++||++ +++|++++|+++|++.++..+...+..++..++.+++++++++.++
T Consensus 99 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 176 (598)
T 3qf4_B 99 KIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR--TPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVN 176 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHH--SCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999986 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHH
Q 001980 565 WRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRR 644 (987)
Q Consensus 565 ~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~ 644 (987)
|.+++++++++|+++++.....+..++..++.++..++....+.|+++|+++||+|++++.+.++|.+..+...+...+.
T Consensus 177 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 256 (598)
T 3qf4_B 177 VILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKA 256 (598)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888877888878888888889999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001980 645 SLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDR 724 (987)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~ 724 (987)
.....+...+..++..+..++++|+|.+++..|.+++|.+++++.+......++..+......+.++..+++|+.++++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 336 (598)
T 3qf4_B 257 QIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDL 336 (598)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888888888888888999999999999999999999888888888899999999999999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceE
Q 001980 725 STRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804 (987)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I 804 (987)
+++.+. +...+.++..|.|+++||+|+|++ +.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|
T Consensus 337 ~~~~~~--~~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 412 (598)
T 3qf4_B 337 EEEKDD--PDAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412 (598)
T ss_dssp CCCCCC--SSCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEE
T ss_pred CCCCCC--CCCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEE
Confidence 654322 112223345688999999999964 3469999999999999999999999999999999999999999999
Q ss_pred EECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCC
Q 001980 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQL 884 (987)
Q Consensus 805 ~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 884 (987)
.+||+|+++++.+++|++|++|||||.+|++||+|||.++.+..++++++++++.++++++++.+|+|+||.+|++|.+|
T Consensus 413 ~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~L 492 (598)
T 3qf4_B 413 LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDL 492 (598)
T ss_dssp EETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTS
T ss_pred EECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCC
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecC
Q 001980 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGS 964 (987)
Q Consensus 885 SgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt 964 (987)
|||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|+||++|+|+|+|+
T Consensus 493 SgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 572 (598)
T 3qf4_B 493 SQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGK 572 (598)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCchHHHHHHhhhc
Q 001980 965 HSELVSRPDGAYSRLLQLQHH 985 (987)
Q Consensus 965 ~~eLl~~~~g~f~~l~~~q~~ 985 (987)
|+||+++ +|.|++++..|..
T Consensus 573 ~~~l~~~-~~~~~~~~~~~~~ 592 (598)
T 3qf4_B 573 HDELIQK-RGFYYELFTSQYG 592 (598)
T ss_dssp HHHHHHT-TCHHHHHHHHHHG
T ss_pred HHHHHhC-CCHHHHHHHHHhh
Confidence 9999987 7999999988754
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-85 Score=789.77 Aligned_cols=572 Identities=31% Similarity=0.460 Sum_probs=510.5
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhh----HHHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKT----KEFVFIYIGAGLYAVVAYLIQ 483 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 483 (987)
+++++++.++.++.++.+++++++.+++....++++..+++.............. ..+..+++++.++..++.++.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788888888888888887777888888888888766533221101111 233444555566677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 484 HYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIV 563 (987)
Q Consensus 484 ~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 563 (987)
.++..+.+.+...++|.++|++++++|++||+. +++|++++|+++|++.++..+...+..++..++.+++++++++.+
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT--SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999985 799999999999999999999988888888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHH
Q 001980 564 EWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLR 643 (987)
Q Consensus 564 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~ 643 (987)
+|.+++++++++|+++++.....+..++..++.+...++....+.|+++|+++||+|++++.+.++|.+..+...+...+
T Consensus 160 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (578)
T 4a82_A 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (578)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888877778887888888888999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001980 644 RSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLD 723 (987)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~ 723 (987)
..+.......+...+..+..++++|+|.+++..|.+++|.+++++.+......++..+......+.++..+++|+.++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 319 (578)
T 4a82_A 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888888888888888999999999999999999999999998888899999999999999999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCce
Q 001980 724 RSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803 (987)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~ 803 (987)
.+++.++.. ...+.++..|.|+++||+|+|++. +.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+
T Consensus 320 ~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 397 (578)
T 4a82_A 320 EDYDIKNGV-GAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397 (578)
T ss_dssp CCCSSCCCT-TCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred CCCcccCCC-CccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence 765533211 112223456789999999999753 346999999999999999999999999999999999999999999
Q ss_pred EEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCC
Q 001980 804 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ 883 (987)
Q Consensus 804 I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~ 883 (987)
|.+||+|+++++.+++|++++||||||.+|++||+|||.++.+..++++++++++.+++++++.++|+|+||.+|++|.+
T Consensus 398 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~ 477 (578)
T 4a82_A 398 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477 (578)
T ss_dssp EEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTT
T ss_pred EEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCc
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEec
Q 001980 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQG 963 (987)
Q Consensus 884 LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~G 963 (987)
||||||||+||||||+++|+|||||||||+||+++++.+++.+++..+++|+|+||||++++..||+|+||++|+|+|.|
T Consensus 478 LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 557 (578)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHhhh
Q 001980 964 SHSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 964 t~~eLl~~~~g~f~~l~~~q~ 984 (987)
+|+||+++ ++.|+++++.|.
T Consensus 558 ~~~el~~~-~~~~~~~~~~q~ 577 (578)
T 4a82_A 558 THRELIAK-QGAYEHLYSIQN 577 (578)
T ss_dssp CHHHHHHT-TSHHHHHHTTTT
T ss_pred CHHHHHhC-CcHHHHHHHhhc
Confidence 99999987 789999998774
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-86 Score=855.04 Aligned_cols=577 Identities=37% Similarity=0.625 Sum_probs=519.3
Q ss_pred chHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-----------------chhhhhhHHHH
Q 001980 405 DGYFLRLLKLNAP-EWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNP-----------------ASMERKTKEFV 466 (987)
Q Consensus 405 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 466 (987)
...+.+++++..+ .+..++++++++++.++..++++++++.+++.+..... .........|.
T Consensus 32 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (1284)
T 3g5u_A 32 AVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYA 111 (1284)
T ss_dssp -CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHH
Confidence 3446666666543 45667778888888888888888888887766532110 00112334577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHH
Q 001980 467 FIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVI 546 (987)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~ 546 (987)
++|++++++..++.+++.+++.+.+.+...++|.++|++++++|++|||+ +++|++++|+++|++.++..++..+..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~--~~~G~l~sr~~~D~~~i~~~~~~~~~~~ 189 (1284)
T 3g5u_A 112 YYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV--HDVGELNTRLTDDVSKINEGIGDKIGMF 189 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHS--CCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999999996 7899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHH
Q 001980 547 LQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKI 626 (987)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~ 626 (987)
+..++.++++++++++++|++++++++++|+++++..+..+..++..++.+...++...++.|+++|+++||+|++|+++
T Consensus 190 ~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~ 269 (1284)
T 3g5u_A 190 FQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKE 269 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHH
Confidence 99999999999999999999999999999999998888888888888888888899999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 627 LSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAP 706 (987)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (987)
.++|.+..+...+...+.....++..++..++.++..++++|+|.+++..|.+++|.+++++.+......++..+...+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1284)
T 3g5u_A 270 LERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIE 349 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888999999999999999999999999999999998888777777888888888899
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCCh
Q 001980 707 EIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGK 786 (987)
Q Consensus 707 ~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGK 786 (987)
.+.++..+++|++++++.+++.++..+...++++.+|.|+|+||+|+|+++++.++|+|+||+|+|||++||||||||||
T Consensus 350 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGK 429 (1284)
T 3g5u_A 350 AFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGK 429 (1284)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSH
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCH
Confidence 99999999999999998766543322222223345789999999999987655679999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhH
Q 001980 787 SSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFV 866 (987)
Q Consensus 787 STL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i 866 (987)
|||+++|+|+|+|++|+|.+||+|+++++++++|++|++|||||.+|++||+|||.++.+++++++++++++.+++++++
T Consensus 430 STl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i 509 (1284)
T 3g5u_A 430 STTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFI 509 (1284)
T ss_dssp HHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred hhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh
Q 001980 867 SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR 946 (987)
Q Consensus 867 ~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~ 946 (987)
.++|+|+||.+|++|.+|||||||||||||||+++|+|||||||||+||+++++.|++.+++..+++|+|+||||++++.
T Consensus 510 ~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~ 589 (1284)
T 3g5u_A 510 MKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVR 589 (1284)
T ss_dssp HHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHT
T ss_pred HhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred ccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhhh
Q 001980 947 GVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 947 ~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q~ 984 (987)
+||+|+||++|+|+|.|+|+||+++ ++.|++++..|.
T Consensus 590 ~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 626 (1284)
T 3g5u_A 590 NADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQT 626 (1284)
T ss_dssp TCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHTC
T ss_pred cCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHhh
Confidence 9999999999999999999999987 799999987763
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-83 Score=772.86 Aligned_cols=568 Identities=27% Similarity=0.422 Sum_probs=505.4
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 407 YFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYF 486 (987)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (987)
.+++++.+.++.++.+++++++.++.+++....++++..+++....... . ....++..+++++.++..++.++..++
T Consensus 12 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (582)
T 3b5x_A 12 TFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE--S-NFLRILPFMILGLMFVRGLSGFASSYC 88 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--h-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666777777777777777777778888877776542111 1 111122233556667777888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001980 487 FSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWR 566 (987)
Q Consensus 487 ~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (987)
..+.+.+...++|.++|+++++.|+.||+. +++|++++|+++|++.++..+...+..++..++.+++++++++.++|.
T Consensus 89 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b5x_A 89 LSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ--ESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQ 166 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999985 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHH
Q 001980 567 VSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL 646 (987)
Q Consensus 567 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (987)
+++++++++|+++++.....+..++..++.+...++....+.|.++|+++||+|++++.+.++|.+..+...+...+..+
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b5x_A 167 LSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVS 246 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888777777777777788888888999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 001980 647 TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRST 726 (987)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 726 (987)
...+...+..++..+..++++|+|.+++..|.+++|.+++++.+......++..+......+.++..+++|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b5x_A 247 AQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLET 326 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEE
Q 001980 727 RIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 806 (987)
Q Consensus 727 ~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~i 806 (987)
+.++ ...+.++..|.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+
T Consensus 327 ~~~~---~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 402 (582)
T 3b5x_A 327 ERDN---GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL 402 (582)
T ss_pred cCCC---CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 4321 111122345789999999999643 246999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHHhcccEEEccccccccccHHHHhccCC-CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCC
Q 001980 807 DGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK-EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLS 885 (987)
Q Consensus 807 dG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~-~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LS 885 (987)
||+|+++++.+++|++++||||||.+|++||+|||.++. ++.++++++++++.++++++++++|+|+||.+|++|.+||
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LS 482 (582)
T 3b5x_A 403 DGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLS 482 (582)
T ss_pred CCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCC
Confidence 999999999999999999999999999999999999987 6788999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 001980 886 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSH 965 (987)
Q Consensus 886 gGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~ 965 (987)
||||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|
T Consensus 483 gGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b5x_A 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRH 562 (582)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHHhhh
Q 001980 966 SELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 966 ~eLl~~~~g~f~~l~~~q~ 984 (987)
+||+++ ++.|+++++.|.
T Consensus 563 ~~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b5x_A 563 ADLLAQ-DGAYAQLHRIQF 580 (582)
T ss_pred HHHHhC-CcHHHHHHHHhh
Confidence 999987 789999999874
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-83 Score=771.66 Aligned_cols=569 Identities=30% Similarity=0.470 Sum_probs=505.2
Q ss_pred hHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 406 GYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHY 485 (987)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (987)
..+++++++.++.++.++.++++.++.+++....++++..+++...... .. ....++..+++++.++..++.++..+
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b60_A 11 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT--DR-SVLLWMPLVVIGLMILRGITSYISSY 87 (582)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST--TH-HHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--ch-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777777777777777777777766443211 11 11111223355666677788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001980 486 FFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEW 565 (987)
Q Consensus 486 ~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (987)
+..+.+.+...++|.++|++++++|++||+. +++|++++|+++|++.++..+...+..++..++.+++++++++.++|
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 165 (582)
T 3b60_A 88 CISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW 165 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSTHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999986 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHH
Q 001980 566 RVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRS 645 (987)
Q Consensus 566 ~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (987)
.+++++++++|+++++.....+..++..++.+...++....+.|+++|+++||+|++++.+.++|.+..+...+...+..
T Consensus 166 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 245 (582)
T 3b60_A 166 QLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 245 (582)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888877777777777788888888899999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 001980 646 LTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRS 725 (987)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~ 725 (987)
+...+...+..++..+..++++|+|.+++..|.+++|.+++++.+......++..+......+.++..+++|+.++++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~ 325 (582)
T 3b60_A 246 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE 325 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888888888888888889999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEE
Q 001980 726 TRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 805 (987)
Q Consensus 726 ~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~ 805 (987)
++.++ . ..+.++..|.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.
T Consensus 326 ~~~~~-~--~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~ 401 (582)
T 3b60_A 326 QEKDE-G--KRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401 (582)
T ss_dssp CSCCC-C--CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE
T ss_pred CCccC-C--CCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEE
Confidence 54321 1 11122345789999999999642 24699999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCC-CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCC
Q 001980 806 IDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK-EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQL 884 (987)
Q Consensus 806 idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~-~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~L 884 (987)
+||+|+++++.+++|++++||||||.+|++||+|||.++. ++.++++++++++.++++++++++|+|+||.++++|.+|
T Consensus 402 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~L 481 (582)
T 3b60_A 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL 481 (582)
T ss_dssp ETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSS
T ss_pred ECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCC
Confidence 9999999999999999999999999999999999999987 678899999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecC
Q 001980 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGS 964 (987)
Q Consensus 885 SgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt 964 (987)
|||||||+||||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+
T Consensus 482 SgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~ 561 (582)
T 3b60_A 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGT 561 (582)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCchHHHHHHhhh
Q 001980 965 HSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 965 ~~eLl~~~~g~f~~l~~~q~ 984 (987)
|+||+++ ++.|+++++.|.
T Consensus 562 ~~~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b60_A 562 HSELLAQ-HGVYAQLHKMQF 580 (582)
T ss_dssp HHHHHHH-TSSHHHHHHHTC
T ss_pred HHHHHHc-CCHHHHHHHHhc
Confidence 9999987 789999999874
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-68 Score=634.63 Aligned_cols=199 Identities=25% Similarity=0.360 Sum_probs=168.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|.|+++|++|+|.+ +.++
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence 5899999999942 3699999999999999999999999999999999999999999986 2469
Q ss_pred EEEcccccc-ccccHHHHhccC-CCC-CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 001980 824 GLVQQEPAL-FAASIFDNIAYG-KEG-ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900 (987)
Q Consensus 824 ~~VpQdp~l-F~gTIreNL~~~-~~~-~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr 900 (987)
+|+||++.+ +..|+++|+... ... ...+.+.++++..++.++ .+.++ .+||||||||++|||||++
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDL-------YDRNV----EDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTT-------TTSBG----GGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchH-------hcCCh----hhCCHHHHHHHHHHHHHHh
Confidence 999999865 678999998643 111 123445666666666443 23333 4699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeC--CEEEEecChhHHhc
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQD--GRIVEQGSHSELVS 970 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~--G~ive~Gt~~eLl~ 970 (987)
+|++|||||||++||+.+...+.+.|+++. .+.|||+|+|+++.+.. ||||++|++ |++++.|+|++++.
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999999874 48999999999999875 899999986 88889999998875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-66 Score=634.57 Aligned_cols=197 Identities=22% Similarity=0.350 Sum_probs=157.3
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..+...|++++|++ ..+|+|+||++++|++++|+||||||||||+|+|+| |+| +|.+... +.+
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR 496 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence 35888899999974 358999999999999999999999999999999996 443 4433211 124
Q ss_pred eEEEcCCC-CCch-hcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHHHHHHHHHhc
Q 001980 178 IGLVNQEP-ALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 178 i~~v~Q~~-~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkqRialARal~ 254 (987)
++|++|++ .++. .|+.||+.+..... .+++.+.++.. |+. ........+||||||||++|||||+
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~l-----------gL~~~~~~~~~~~LSGGqkQRvaLArAL~ 564 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEF-----------GFTDEMIAMPISALSGGWKMKLALARAVL 564 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHT-----------TCCHHHHHSBGGGCCHHHHHHHHHHHHHH
T ss_pred EEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHc-----------CCChhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 78999986 4554 49999998621111 33343333333 442 2345556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcccc-CCEEEEEeCCEEE-EecChHHHHH
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVV-ETGTHEELIA 325 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~ 325 (987)
.+|++|||||||++||+.+++++.+.|++ .|+|+|+|||+++++.. ||+|++|++|+++ ..|+++++.+
T Consensus 565 ~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 565 RNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999999999999999999988 58999999999999876 8999999999997 6899887653
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-68 Score=626.12 Aligned_cols=199 Identities=23% Similarity=0.351 Sum_probs=166.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.++++|++++|.+ ..|+++||+|++||++||+|+||||||||+++|.|+++|++|+|.+ +.+|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 4899999999942 3699999999999999999999999999999999999999999986 2469
Q ss_pred EEEcccccc-ccccHHHHhccC-CCC-CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 001980 824 GLVQQEPAL-FAASIFDNIAYG-KEG-ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900 (987)
Q Consensus 824 ~~VpQdp~l-F~gTIreNL~~~-~~~-~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr 900 (987)
+||||++.. +..|+.+|+... .+. ...+.+.++++..++.+. .+.++ .+||||||||++|||||++
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDL-------YDREV----NELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGG-------TTSBG----GGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhh-------hcCCh----hhCCHHHHHHHHHHHHHHh
Confidence 999999976 678999998642 111 123344555555554332 23333 4699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeC--CEEEEecChhHHhc
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQD--GRIVEQGSHSELVS 970 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~--G~ive~Gt~~eLl~ 970 (987)
+|++|||||||++||+.+...|.+.|+++. .+.|||+|||+++.+.. ||||++|++ |++++.|+|++++.
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999999874 38999999999999875 899999986 78999999998875
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-65 Score=627.81 Aligned_cols=201 Identities=25% Similarity=0.377 Sum_probs=136.2
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCccHHHHH---------------------HHHHcCCCCC-------ccEEEECCEeC
Q 001980 115 VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVV---------------------SLIERFYDPN-------AGHVLLDNVDI 166 (987)
Q Consensus 115 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl---------------------~~l~g~~~~~-------~G~i~~~g~~~ 166 (987)
..+|+||||+|++||+++|+||||||||||+ +++.|+..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3489999999999999999999999999998 8889999998 45556666544
Q ss_pred CCCCHHHHhcceEEEcCCCCC-------------------c-hhcHHHHHhcCCCC-CC--HHH-----HHHHHHHHhHH
Q 001980 167 KTLQLRWLRDQIGLVNQEPAL-------------------F-ATTILENILYGKPE-AT--MAE-----VEAAASAANAH 218 (987)
Q Consensus 167 ~~~~~~~~~~~i~~v~Q~~~l-------------------~-~~tv~eni~~~~~~-~~--~~~-----~~~~~~~~~~~ 218 (987)
.. ..+..++|++|.+.+ + ..|++||+.+.... .. ..+ ..+..+..
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 32 123456666665432 2 34899999874211 00 001 11111111
Q ss_pred HHHHhCCCCCccc-ccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEc
Q 001980 219 SFITLLPNGYSTQ-VGERGVQLSGGQKQRIAIARAMLKNPK--ILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVA 294 (987)
Q Consensus 219 ~~~~~~~~g~~t~-~~~~g~~LSgGqkqRialARal~~~~~--illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vt 294 (987)
+.++.+ |+... ......+|||||||||+|||||+.+|+ +|||||||++||+.+..++.+.|+++. +|+|+|+||
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 224444 55433 466778999999999999999999998 999999999999999999999999885 589999999
Q ss_pred CCCCccccCCEEEEE------eCCEEEEecChHHHH
Q 001980 295 HRLSTIRNVDTVAVI------QQGQVVETGTHEELI 324 (987)
Q Consensus 295 H~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~ 324 (987)
|+++.+..||+|++| ++|++++.|+++++.
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 999988889999999 899999999888764
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-65 Score=559.62 Aligned_cols=277 Identities=44% Similarity=0.699 Sum_probs=251.0
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCC
Q 001980 705 APEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGS 784 (987)
Q Consensus 705 ~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGs 784 (987)
+.++.++..+++|++++++.+++..... ...+.++..|.|+|+||+|+|++ ..++|+||||+|++||++||||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGs 91 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLP-GAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGA 91 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCT-TCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccc-cccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCc
Confidence 3445566778899999988665432211 11122234678999999999964 34699999999999999999999999
Q ss_pred ChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchh
Q 001980 785 GKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHG 864 (987)
Q Consensus 785 GKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~ 864 (987)
|||||+++|+|+|+|++|+|.+||+|+.+++.+.+|++|+||||+|.+|++||+|||.++.+.+++++++++++.+++.+
T Consensus 92 GKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~ 171 (306)
T 3nh6_A 92 GKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHD 171 (306)
T ss_dssp HHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred hHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchh
Q 001980 865 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLST 944 (987)
Q Consensus 865 ~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~t 944 (987)
++..+|+||+|.++++|.+||||||||+||||||+++|+|||||||||+||+.+++.|++.|++..+++|+|+||||+++
T Consensus 172 ~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLST 251 (306)
T ss_dssp HHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHH
T ss_pred HHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred hhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhhhc
Q 001980 945 IRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHH 985 (987)
Q Consensus 945 i~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q~~ 985 (987)
+..||+|+||++|+|+|.|+|++|+++ ++.|++||+.|..
T Consensus 252 ~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 252 VVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQG 291 (306)
T ss_dssp HHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHC
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHHh
Confidence 999999999999999999999999987 8999999988753
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-65 Score=600.24 Aligned_cols=199 Identities=20% Similarity=0.263 Sum_probs=166.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.++++|++++|.+ ..|+++||+|++||++||+|+||||||||+++|.|+++|++|+|.++| ..+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 4899999999942 368899999999999999999999999999999999999999999876 468
Q ss_pred EEEcccccc-ccccHHHHhccCCCC---CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 824 GLVQQEPAL-FAASIFDNIAYGKEG---ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 824 ~~VpQdp~l-F~gTIreNL~~~~~~---~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
+++||++.. |..|+++|+...... ...+.+.++++..++.++. +.++ .+||||||||++|||||+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLL-------ESNV----NDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCT-------TSBG----GGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHh-------cCCh----hhCCHHHHHHHHHHHHHH
Confidence 999999864 578999999753221 1233455666666665432 2333 469999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeC--CEEEEecChhHHh
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQD--GRIVEQGSHSELV 969 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~--G~ive~Gt~~eLl 969 (987)
++|+||||||||++||+.+...|++.|+++. .++|||+|||+++.+.. ||||+||++ |++...++|.++.
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999999999874 48899999999999876 899999986 6677777776654
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-64 Score=596.95 Aligned_cols=198 Identities=23% Similarity=0.358 Sum_probs=165.0
Q ss_pred EeEEEECCCCCCccceeeeeEEEeCC-----cEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 748 RHVDFAYPSRPDVVVFKDFNLRIRAG-----QSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 748 ~~vsf~Y~~~~~~~vL~~vsl~I~~G-----e~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
++++|+|++. ..+++|+||++++| |++||+|+||||||||+++|.|+.+|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 5677888632 35799999999999 7899999999999999999999999999962 21 346
Q ss_pred cEEEccccc-cccccHHHHhccCC--CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 823 IGLVQQEPA-LFAASIFDNIAYGK--EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 823 i~~VpQdp~-lF~gTIreNL~~~~--~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
++++||++. .|.+|+++|+.... .....+...++++..++.++ .+.++ ..||||||||++|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~-------~~~~~----~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI-------IDQEV----QHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTT-------SSSBS----SSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhh-------hcCCh----hhCCHHHHHHHHHHHHHH
Confidence 999999975 57889999985321 11234555667777776543 23333 469999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeC--CEEEEecChhHHhcC
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQD--GRIVEQGSHSELVSR 971 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~--G~ive~Gt~~eLl~~ 971 (987)
++|+||||||||++||+.+...+.+.|+++. .++|||+|||+++.+.. ||||+||++ |+++..|+|++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999999864 48999999999999876 899999996 999999999999865
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-61 Score=578.33 Aligned_cols=330 Identities=43% Similarity=0.623 Sum_probs=300.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001980 5 LGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSII 84 (987)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 84 (987)
...++..++..++.++++|+|++++..|.+++|.+++++.++.....|+..++..+..+.++..|++|+.++++.+++..
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 325 (578)
T 4a82_A 246 YSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIK 325 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 34556666777788889999999999999999999999888888889999999999999999999999999998765432
Q ss_pred CCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE
Q 001980 85 QDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV 164 (987)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~ 164 (987)
... .....+...+.|+++|++|+|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+
T Consensus 326 ~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 403 (578)
T 4a82_A 326 NGV-GAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGH 403 (578)
T ss_dssp CCT-TCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTE
T ss_pred CCC-CccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCE
Confidence 211 111112234679999999999753 346999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 165 DIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 165 ~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
|+++++.+++|++|+||||+|++|++||+|||.+|.+..+++++.++++.++++++++.+|+|++|.+|++|.+||||||
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~ 483 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQK 483 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHH
T ss_pred EhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHH
Confidence 99999999999999999999999999999999999888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHH
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
||++|||||+++|+++|||||||+||+++++.+.+.++++.+++|+|+||||++.++.||+|++|++|+|+++|+|+|++
T Consensus 484 Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~ 563 (578)
T 4a82_A 484 QRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI 563 (578)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HhhhhHHHHHHH
Q 001980 325 AKAGAYASLIRF 336 (987)
Q Consensus 325 ~~~~~~~~~~~~ 336 (987)
+.++.|.+++..
T Consensus 564 ~~~~~~~~~~~~ 575 (578)
T 4a82_A 564 AKQGAYEHLYSI 575 (578)
T ss_dssp HTTSHHHHHHTT
T ss_pred hCCcHHHHHHHh
Confidence 998888887643
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-61 Score=576.27 Aligned_cols=330 Identities=35% Similarity=0.555 Sum_probs=300.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 001980 6 GLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQ 85 (987)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 85 (987)
..++..++..++.++++|+|++++..|.+++|.+++++.+......|+..++..+..+.++..|++|+.++++.+++...
T Consensus 249 ~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 328 (587)
T 3qf4_A 249 ALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEE 328 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCC
Confidence 44556667777888899999999999999999999998888888899999999999999999999999999987654322
Q ss_pred CCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 001980 86 DPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 165 (987)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~ 165 (987)
.. .....+...+.|+++|++|+|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+|
T Consensus 329 ~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~ 406 (587)
T 3qf4_A 329 AD-NALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELD 406 (587)
T ss_dssp CT-TCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSB
T ss_pred CC-CccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEE
Confidence 11 111122335679999999999753 3569999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 166 IKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 166 ~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
+++++.+++|++|+||||+|++|++||+|||.++.+..+++++.++++.+++++++..+|+|++|.++++|.+|||||||
T Consensus 407 i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQ 486 (587)
T 3qf4_A 407 VRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQ 486 (587)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHH
T ss_pred cccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHH
Confidence 99999999999999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|++|||||+++|+|+|||||||+||+++++.+.+.++++.+|+|+|+||||++.+..||+|++|++|+|+++|+|+|+++
T Consensus 487 rv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 487 RLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp HHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHH
Q 001980 326 KAGAYASLIRFQ 337 (987)
Q Consensus 326 ~~~~~~~~~~~~ 337 (987)
+.+.|.+++..+
T Consensus 567 ~~~~~~~~~~~~ 578 (587)
T 3qf4_A 567 HCKPYREIYESQ 578 (587)
T ss_dssp HCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 989998887654
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-60 Score=574.45 Aligned_cols=331 Identities=38% Similarity=0.584 Sum_probs=301.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 001980 4 GLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSI 83 (987)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~ 83 (987)
+...++..++..++.++++|+|++++..|.+++|.+++++.+......|+..++..+..+.++..|++|+.++++.+++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 340 (598)
T 3qf4_B 261 GVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEK 340 (598)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 34556677778888889999999999999999999999888888888999999999999999999999999999876543
Q ss_pred CCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 001980 84 IQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163 (987)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g 163 (987)
... .....+...+.|+++|++|+|++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||
T Consensus 341 ~~~--~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 416 (598)
T 3qf4_B 341 DDP--DAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDG 416 (598)
T ss_dssp CCS--SCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETT
T ss_pred CCC--CCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECC
Confidence 211 11112233467999999999974 34589999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHH
Q 001980 164 VDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ 243 (987)
Q Consensus 164 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 243 (987)
+|+.+++.+++|++|+||||+|++|++||+|||.++.+..+++++.++++.++++++++.+|+|++|.+|++|.+|||||
T Consensus 417 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 496 (598)
T 3qf4_B 417 IDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQ 496 (598)
T ss_dssp EEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHH
T ss_pred EEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHH
Confidence 99999999999999999999999999999999999988777788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHH
Q 001980 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 244 kqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 323 (987)
|||++|||||+++|+++|||||||+||+++++.+.+.++++.+|+|+|+||||++.++.||+|++|++|+|+++|+|+|+
T Consensus 497 ~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l 576 (598)
T 3qf4_B 497 RQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDEL 576 (598)
T ss_dssp HHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHH
Q 001980 324 IAKAGAYASLIRFQE 338 (987)
Q Consensus 324 ~~~~~~~~~~~~~~~ 338 (987)
+++++.|.+++..+.
T Consensus 577 ~~~~~~~~~~~~~~~ 591 (598)
T 3qf4_B 577 IQKRGFYYELFTSQY 591 (598)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHh
Confidence 999999998887654
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-59 Score=562.13 Aligned_cols=329 Identities=39% Similarity=0.560 Sum_probs=298.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001980 5 LGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSII 84 (987)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 84 (987)
...++..++..++.++++|+|++++..|.+++|.+++++.++.....|+..+...+..+.++..+++|+.++++.+++..
T Consensus 250 ~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 329 (582)
T 3b5x_A 250 IADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD 329 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 34556667777888889999999999999999999999999999999999999999999999999999999998765422
Q ss_pred CCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE
Q 001980 85 QDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV 164 (987)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~ 164 (987)
. . ....+...+.|+++|++|+|+++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+
T Consensus 330 ~-~--~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 405 (582)
T 3b5x_A 330 N-G--KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGH 405 (582)
T ss_pred C-C--CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCE
Confidence 1 1 11112224569999999999743 245899999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCC-CCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHH
Q 001980 165 DIKTLQLRWLRDQIGLVNQEPALFATTILENILYGK-PEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ 243 (987)
Q Consensus 165 ~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 243 (987)
|+.+.+..++|++|+||||+|++|++||+|||.++. +..++++++++++.++++++++.+|+|++|.+|++|.+|||||
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq 485 (582)
T 3b5x_A 406 DVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485 (582)
T ss_pred EhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHH
Confidence 999999999999999999999999999999999987 5667788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHH
Q 001980 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 244 kqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 323 (987)
|||++|||||+++|+++|||||||+||+++++.+.+.|+++.+|+|+|+||||++.++.||+|++|++|++++.|+++++
T Consensus 486 ~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 565 (582)
T 3b5x_A 486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADL 565 (582)
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999998779999999999999988999999999999999999999
Q ss_pred HHhhhhHHHHHHHH
Q 001980 324 IAKAGAYASLIRFQ 337 (987)
Q Consensus 324 ~~~~~~~~~~~~~~ 337 (987)
+++.+.|+++++.|
T Consensus 566 ~~~~~~~~~~~~~q 579 (582)
T 3b5x_A 566 LAQDGAYAQLHRIQ 579 (582)
T ss_pred HhCCcHHHHHHHHh
Confidence 99888898887654
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-59 Score=562.42 Aligned_cols=329 Identities=43% Similarity=0.638 Sum_probs=298.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001980 5 LGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSII 84 (987)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 84 (987)
...++..++..++.++++|+|++++..|.+++|.+++++.+......|+..+...+..+.++..+++|+.++++.+++..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 329 (582)
T 3b60_A 250 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKD 329 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 34556667777788888999999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE
Q 001980 85 QDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV 164 (987)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~ 164 (987)
. .....+...+.|+++|++|+|+++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+
T Consensus 330 ~---~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~ 405 (582)
T 3b60_A 330 E---GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGH 405 (582)
T ss_dssp C---CCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTE
T ss_pred C---CCCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCE
Confidence 1 111112224569999999999742 245899999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCC-CCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHH
Q 001980 165 DIKTLQLRWLRDQIGLVNQEPALFATTILENILYGK-PEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ 243 (987)
Q Consensus 165 ~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 243 (987)
|+.+++..++|++|+||||+|++|++||+|||.++. +..++++++++++.++++++++.+|+|++|.+|++|.+|||||
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq 485 (582)
T 3b60_A 406 DLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485 (582)
T ss_dssp ETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHH
T ss_pred EccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHH
Confidence 999999999999999999999999999999999987 5667888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHH
Q 001980 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 244 kqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 323 (987)
|||++|||||+++|+++|||||||+||+++++.+.+.++++.+|+|+|+||||++.++.||+|++|++|++++.|+++|+
T Consensus 486 ~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 565 (582)
T 3b60_A 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSEL 565 (582)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999998789999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHH
Q 001980 324 IAKAGAYASLIRFQ 337 (987)
Q Consensus 324 ~~~~~~~~~~~~~~ 337 (987)
+++++.|++++..|
T Consensus 566 ~~~~~~~~~~~~~q 579 (582)
T 3b60_A 566 LAQHGVYAQLHKMQ 579 (582)
T ss_dssp HHHTSSHHHHHHHT
T ss_pred HHcCCHHHHHHHHh
Confidence 99888898887654
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-60 Score=515.69 Aligned_cols=277 Identities=45% Similarity=0.675 Sum_probs=248.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCC
Q 001980 59 NLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSG 138 (987)
Q Consensus 59 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sG 138 (987)
.+..++++.++++|++++++.+++..... .....+...+.|+++||+|+|++ ..++|+|+||+|++||+++|+||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sG 90 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLP-GAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSG 90 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCT-TCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSC
T ss_pred cchhHHHHHHHHHHHHHHHhCCccccccc-cccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCC
Confidence 34556778899999999998755432111 11111223457999999999974 2459999999999999999999999
Q ss_pred ccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHH
Q 001980 139 SGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAH 218 (987)
Q Consensus 139 sGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~ 218 (987)
||||||+++|+|+++|++|+|.++|+++..++..++|++|+||||+|++|++||+|||.++.+....++++++++.+++.
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCH
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999999998877888999999999999
Q ss_pred HHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCC
Q 001980 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS 298 (987)
Q Consensus 219 ~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~ 298 (987)
+++..+|+|++|.++++|.+|||||||||+|||||+++|+|||||||||+||+.++..+++.|.++.+++|+|+||||++
T Consensus 171 ~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred ccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHHHHHH
Q 001980 299 TIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQE 338 (987)
Q Consensus 299 ~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 338 (987)
.+..||+|++|++|+|++.|+++++++..+.|..++..+.
T Consensus 251 ~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~ 290 (306)
T 3nh6_A 251 TVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQ 290 (306)
T ss_dssp HHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHH
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHH
Confidence 9988999999999999999999999999999999887664
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-55 Score=467.42 Aligned_cols=240 Identities=47% Similarity=0.769 Sum_probs=226.2
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
..|+++||+++|++. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+++...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 369999999999421 2469999999999999999999999999999999999999999999999999999998889999
Q ss_pred cEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 001980 823 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 902 (987)
Q Consensus 823 i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p 902 (987)
|+||||+|.+|++|++|||.++.+..++++++++++.+++.+++..+|.|+++.+++.+.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876666788899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHh
Q 001980 903 AILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 982 (987)
Q Consensus 903 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~ 982 (987)
++||||||||+||+.+++.+++.|++..+++|||+|||+++.+..||+|++|++|++++.|+++++++.+.+.|++++..
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~ 244 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence 99999999999999999999999999877899999999999998899999999999999999999998767899999876
Q ss_pred h
Q 001980 983 Q 983 (987)
Q Consensus 983 q 983 (987)
|
T Consensus 245 ~ 245 (247)
T 2ff7_A 245 Q 245 (247)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-54 Score=460.85 Aligned_cols=241 Identities=43% Similarity=0.753 Sum_probs=224.9
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
+.|+++||+|+|++....++|+|+||+|++||++||+||||||||||+++|.|+++| +|+|.+||.|+.+++...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999643224699999999999999999999999999999999999987 8999999999998888889999
Q ss_pred cEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 001980 823 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 902 (987)
Q Consensus 823 i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p 902 (987)
|+||||+|.+|++|++|||.++....+++++.++++.+++.+++..+|+++++.+++.+.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999876556778899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHh
Q 001980 903 AILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 982 (987)
Q Consensus 903 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~ 982 (987)
+|||||||||+||+.+++.+++.|++..+++|+|+|||+++.+..||+|++|++|++++.|+|+++++. .+.|.+++..
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 253 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNM 253 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHh
Confidence 999999999999999999999999998778999999999999988999999999999999999999876 6889999987
Q ss_pred hhc
Q 001980 983 QHH 985 (987)
Q Consensus 983 q~~ 985 (987)
|..
T Consensus 254 ~~~ 256 (260)
T 2ghi_A 254 QSG 256 (260)
T ss_dssp HHC
T ss_pred hhh
Confidence 743
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-53 Score=458.84 Aligned_cols=241 Identities=39% Similarity=0.687 Sum_probs=222.0
Q ss_pred cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhc
Q 001980 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 821 (987)
Q Consensus 742 ~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~ 821 (987)
.+.|+++||+++|++..+.++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+.+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 35799999999996422246999999999999999999999999999999999999999999999999999888888999
Q ss_pred ccEEEccccccccccHHHHhccCCCCCCH-HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 001980 822 KIGLVQQEPALFAASIFDNIAYGKEGATE-AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900 (987)
Q Consensus 822 ~i~~VpQdp~lF~gTIreNL~~~~~~~sd-~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr 900 (987)
+|+||||+|.+|.+|++|||.++.+...+ +++.++++..++.+++..+|.|+++.+++.+.+||||||||++|||||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999987654444 67788888999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHH
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 978 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~ 978 (987)
+|+|||||||||+||+.+...+.+.|++..+ ++|||+|||+++.+..||+|++|++|+|++.|+++++++. .+.|.+
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~ 252 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYRS 252 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHHH
Confidence 9999999999999999999999999998754 8999999999999988999999999999999999999876 688999
Q ss_pred HHHhh
Q 001980 979 LLQLQ 983 (987)
Q Consensus 979 l~~~q 983 (987)
+++.+
T Consensus 253 ~~~~~ 257 (271)
T 2ixe_A 253 MVEAL 257 (271)
T ss_dssp HHHC-
T ss_pred HHHHh
Confidence 98766
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-54 Score=457.28 Aligned_cols=236 Identities=44% Similarity=0.764 Sum_probs=221.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++||+|+|++ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 246999999999999999999999999999999999999999999999999999888778899999
Q ss_pred EEccccccccccHHHHhccC-CCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCC
Q 001980 825 LVQQEPALFAASIFDNIAYG-KEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA 903 (987)
Q Consensus 825 ~VpQdp~lF~gTIreNL~~~-~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ 903 (987)
||||+|.+|.+|++|||.++ .+..++++++++++.+++.+++..+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999987 45567888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhh
Q 001980 904 ILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983 (987)
Q Consensus 904 ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q 983 (987)
+||||||||+||+.+.+.+.+.|++..+++|||+|||+++.+..||+|++|++|++++.|+|++++++ .+.|.+++..+
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~~ 238 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHHHhh
Confidence 99999999999999999999999987788999999999999988999999999999999999999876 57788888765
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-52 Score=511.73 Aligned_cols=214 Identities=25% Similarity=0.383 Sum_probs=160.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHH-HhccCC-------C---------------
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIAL-IERFYD-------P--------------- 799 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~l-L~rl~~-------p--------------- 799 (987)
..|+++|+++ .+|+||||+|++||++||+|+||||||||++. |.++.. |
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 3599999986 15999999999999999999999999999996 765531 2
Q ss_pred ---CCc-------eEEECCccCCCCCH----------HHHhcccEEEccc------------------------------
Q 001980 800 ---TAG-------KVMIDGKDIRRLNL----------KSLRLKIGLVQQE------------------------------ 829 (987)
Q Consensus 800 ---~~G-------~I~idG~di~~i~l----------~~lR~~i~~VpQd------------------------------ 829 (987)
.+| .|.+||.++..-+. +.+|..++.+|++
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 356 78999998865432 4455544444431
Q ss_pred -cccc-------------------------cccHHHHhcc--------CCCCCCHHHHHHHHHHcCchhhHhhCCCcCCC
Q 001980 830 -PALF-------------------------AASIFDNIAY--------GKEGATEAEVVEAARAANVHGFVSALPNAYKT 875 (987)
Q Consensus 830 -p~lF-------------------------~gTIreNL~~--------~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt 875 (987)
-.++ .-||.||+.+ .......+++.++++..++...
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~---------- 722 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYL---------- 722 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCTTS----------
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCCcc----------
Confidence 1111 1245555532 2111111223344444443211
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEE
Q 001980 876 PVGERGVQLSGGQKQRIAIARAVLKN---PAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCI 951 (987)
Q Consensus 876 ~vge~G~~LSgGQrQrlaLARAllr~---p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~I 951 (987)
.++.....||||||||++|||||+++ |+||||||||++||+.+.+.|.+.|+++. +|.|||+|+|+++.+..||+|
T Consensus 723 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDri 802 (842)
T 2vf7_A 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWV 802 (842)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEE
T ss_pred cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEE
Confidence 23555668999999999999999996 69999999999999999999999999875 689999999999999889999
Q ss_pred EEE------eCCEEEEecChhHHhcCCCc
Q 001980 952 GVV------QDGRIVEQGSHSELVSRPDG 974 (987)
Q Consensus 952 ivl------~~G~ive~Gt~~eLl~~~~g 974 (987)
++| ++|+|++.|+|+++++.+.+
T Consensus 803 i~L~p~~g~~~G~Iv~~g~~~el~~~~~~ 831 (842)
T 2vf7_A 803 LDIGPGAGEDGGRLVAQGTPAEVAQAAGS 831 (842)
T ss_dssp EEECSSSGGGCCSEEEEECHHHHTTCTTC
T ss_pred EEECCCCCCCCCEEEEEcCHHHHHhCchh
Confidence 999 69999999999999987544
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-52 Score=441.97 Aligned_cols=237 Identities=44% Similarity=0.770 Sum_probs=218.3
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..|+++|++|+|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 469999999999421 2458999999999999999999999999999999999999999999999999998888888889
Q ss_pred eEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 178 IGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 178 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
|+||||+|.+|+.||+||+.++.+....+++.++++..++.+++..+|.|+++.+++++.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999889999999986555567788888899999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh-hhhHHHHHH
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK-AGAYASLIR 335 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~ 335 (987)
+++||||||++||+.+++.+.+.|+++.+|+|+|+|||+++.+..||+|++|++|++++.|+++++.+. .+.|..++.
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~ 243 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHH
Confidence 999999999999999999999999988778999999999999888999999999999999999999876 667766654
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-52 Score=468.07 Aligned_cols=238 Identities=23% Similarity=0.414 Sum_probs=223.2
Q ss_pred CCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH
Q 001980 739 ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 818 (987)
Q Consensus 739 ~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~ 818 (987)
++..+.|+++||+++|+.. +.++|+||||+|++||.++|+||||||||||+++|.|+++ ++|+|.+||.|+.+++.+.
T Consensus 14 ~~~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 14 WPSGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp SSSSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHH
T ss_pred CCCCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHH
Confidence 4556789999999999633 3469999999999999999999999999999999999998 8999999999999999999
Q ss_pred HhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHH
Q 001980 819 LRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 898 (987)
Q Consensus 819 lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAl 898 (987)
+|++|+||||++.+|.+|+++|+.+.. ...+++++++++.+++.+++.+.|.++++.++++|.+||||||||+||||||
T Consensus 92 ~rr~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL 170 (390)
T 3gd7_A 92 WRKAFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV 170 (390)
T ss_dssp HHHTEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHH
T ss_pred HhCCEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998543 4578899999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHH
Q 001980 899 LKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 978 (987)
Q Consensus 899 lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~ 978 (987)
+++|+|||||||||+||+.+...+++.|++..+++|+|+|||+++.+..||||+||++|+|++.|+|+++++++...|..
T Consensus 171 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va 250 (390)
T 3gd7_A 171 LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVA 250 (390)
T ss_dssp HTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHHH
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHHH
Confidence 99999999999999999999999999999877789999999999999889999999999999999999999998877765
Q ss_pred H
Q 001980 979 L 979 (987)
Q Consensus 979 l 979 (987)
-
T Consensus 251 ~ 251 (390)
T 3gd7_A 251 G 251 (390)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-51 Score=502.38 Aligned_cols=219 Identities=27% Similarity=0.414 Sum_probs=165.4
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHH---------HHHhccCCCC------C------
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVI---------ALIERFYDPT------A------ 801 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~---------~lL~rl~~p~------~------ 801 (987)
+.+++++++ ...|+||||+|++|+.+||+|+||||||||+ +++.+...+. +
T Consensus 588 ~~l~v~~~~--------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~ 659 (916)
T 3pih_A 588 ASLKIKGVR--------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENID 659 (916)
T ss_dssp SEEEEEEEC--------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCC
T ss_pred ceEEEeeec--------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhcccccccccccccccccccc
Confidence 357777663 1369999999999999999999999999997 3444433332 2
Q ss_pred ceEEECCccCCCCCH----------HHHh-------------------------------cccEEEccccccc-------
Q 001980 802 GKVMIDGKDIRRLNL----------KSLR-------------------------------LKIGLVQQEPALF------- 833 (987)
Q Consensus 802 G~I~idG~di~~i~l----------~~lR-------------------------------~~i~~VpQdp~lF------- 833 (987)
+.|.+|+.++...+. +.+| +..++++|+..++
T Consensus 660 ~~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c 739 (916)
T 3pih_A 660 KMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVEC 739 (916)
T ss_dssp EEEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEEC
T ss_pred ceEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeec
Confidence 246677666643321 1112 2356777776554
Q ss_pred --------------------------cccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 001980 834 --------------------------AASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 887 (987)
Q Consensus 834 --------------------------~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG 887 (987)
..|+++|+.+.......++..++++.+++.. ..+++.+.+||||
T Consensus 740 ~~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL~~----------~~lgq~~~~LSGG 809 (916)
T 3pih_A 740 DVCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGY----------VKLGQPATTLSGG 809 (916)
T ss_dssp TTTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTGGG----------SBTTCCSTTCCHH
T ss_pred ccccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCCch----------hhccCCccCCCHH
Confidence 3467777776543333345566666666632 2356677889999
Q ss_pred HHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEE------eCC
Q 001980 888 QKQRIAIARAVLKNP---AILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVV------QDG 957 (987)
Q Consensus 888 QrQrlaLARAllr~p---~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~Iivl------~~G 957 (987)
||||++|||||+++| +||||||||++||+.+.+.+++.|+++. +|+|||+|+|+++.+..||+|++| ++|
T Consensus 810 ErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G 889 (916)
T 3pih_A 810 EAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGG 889 (916)
T ss_dssp HHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCC
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCC
Confidence 999999999999876 7999999999999999999999999875 589999999999999999999999 899
Q ss_pred EEEEecChhHHhcCCCchHHHH
Q 001980 958 RIVEQGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 958 ~ive~Gt~~eLl~~~~g~f~~l 979 (987)
+|++.|+|+++++++++...++
T Consensus 890 ~Iv~~Gtpeel~~~~~syt~~~ 911 (916)
T 3pih_A 890 YIVATGTPEEIAKNPHSYTGRF 911 (916)
T ss_dssp EEEEEESHHHHHSCTTCHHHHH
T ss_pred EEEEEcCHHHHHhCCchHHHHH
Confidence 9999999999998865433333
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-51 Score=439.68 Aligned_cols=239 Identities=44% Similarity=0.743 Sum_probs=218.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..|+++|++|+|++....++|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++...+...++++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 359999999999753224589999999999999999999999999999999999987 8999999999988888888889
Q ss_pred eEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 178 IGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 178 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
|+|++|+|.+|+.||+||+.++......+++.++++.+++.+++..+|+|++|.+++++.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999889999999976544566777888888888888899999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHHHHH
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 337 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 337 (987)
++|||||||++||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+..+.|..++..+
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 254 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNMQ 254 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHhh
Confidence 99999999999999999999999999877899999999999988899999999999999999999988777777766544
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-51 Score=440.09 Aligned_cols=238 Identities=40% Similarity=0.718 Sum_probs=214.6
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..|+++|++|+|++..+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999974222458999999999999999999999999999999999999999999999999988877778889
Q ss_pred eEEEcCCCCCchhcHHHHHhcCCCCCCH-HHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 178 IGLVNQEPALFATTILENILYGKPEATM-AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 178 i~~v~Q~~~l~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|+||+|+|.+|+.||+|||.++.+.... +++.+++...++.++++.+|.|+++.+++++.+|||||||||+|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999988999999998653333 556666667777888999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHH
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLI 334 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 334 (987)
|++||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++.+..||+|++|++|++++.|+++++.+..+.|..++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 254 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHHH
Confidence 999999999999999999999999999853 899999999999888899999999999999999999988777777665
Q ss_pred H
Q 001980 335 R 335 (987)
Q Consensus 335 ~ 335 (987)
.
T Consensus 255 ~ 255 (271)
T 2ixe_A 255 E 255 (271)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-51 Score=437.17 Aligned_cols=233 Identities=48% Similarity=0.744 Sum_probs=212.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++|+|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 245899999999999999999999999999999999999999999999999998776666788899
Q ss_pred EEcCCCCCchhcHHHHHhcC-CCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 180 LVNQEPALFATTILENILYG-KPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 180 ~v~Q~~~l~~~tv~eni~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
|+||+|.+|+.||+|||.++ .+....+++.++++..++.+++..+|.|+++.+++++.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999989999999997 44455677888888888888889999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHH
Q 001980 259 ILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLI 334 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 334 (987)
++||||||++||+.+++.+.+.|+++.+|+|+|++||+++.+..||+|++|++|++++.|+++++.+....|..++
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 235 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHH
Confidence 9999999999999999999999998877899999999999887899999999999999999999987665565554
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-50 Score=424.62 Aligned_cols=226 Identities=34% Similarity=0.520 Sum_probs=204.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|++. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+|| ++
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999632 34699999999999999999999999999999999999999999999999 49
Q ss_pred EEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCC
Q 001980 824 GLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA 903 (987)
Q Consensus 824 ~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ 903 (987)
+||||+|.+|+.|++|||.++.. ..+++..++++.+++.+.+..+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcCCCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998653 33445677788888888888889999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHH---HHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHH
Q 001980 904 ILLLDEATSALDAESECVLQEALE---RLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 980 (987)
Q Consensus 904 ILlLDEaTS~LD~~te~~I~~~l~---~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~ 980 (987)
|||||||||+||+.++..+.+.|. +..+++|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|.+++
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 226 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFL 226 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHHH
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHHH
Confidence 999999999999999999999994 33468999999999999888999999999999999999999886 78899999
Q ss_pred Hhhhc
Q 001980 981 QLQHH 985 (987)
Q Consensus 981 ~~q~~ 985 (987)
..|..
T Consensus 227 ~~~~~ 231 (237)
T 2cbz_A 227 RTYAS 231 (237)
T ss_dssp HHTCC
T ss_pred HHHHh
Confidence 88743
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-49 Score=418.27 Aligned_cols=222 Identities=29% Similarity=0.458 Sum_probs=199.9
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
+.|+++||+++|+++ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+|| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 469999999999632 34699999999999999999999999999999999999999999999998 4
Q ss_pred cEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 001980 823 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 902 (987)
Q Consensus 823 i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p 902 (987)
|+||||+|.+|++|++||+.++.. ..+....++++.+++.+++..+|.+.++++++.+.+||||||||++|||||+++|
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998643 3455566778888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHH-HHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHH
Q 001980 903 AILLLDEATSALDAESECVLQEAL-ERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 980 (987)
Q Consensus 903 ~ILlLDEaTS~LD~~te~~I~~~l-~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~ 980 (987)
++||||||||+||+.+++.+.+.+ ++..+++|+|+|||+++.+..||+|++|++|++++.|++++++++ .+.|.+++
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 227 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSSKL 227 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC---CHHHHH
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHh
Confidence 999999999999999999999974 555568999999999999888999999999999999999999876 45676654
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-48 Score=412.36 Aligned_cols=223 Identities=33% Similarity=0.540 Sum_probs=198.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++|+|+.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999632 24589999999999999999999999999999999999999999999998 59
Q ss_pred EEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 179 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 179 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
+|++|+|++++.||+|||.++... ..+...++.+.+++.+.+..+|.|++|.+++++.+||||||||++|||||+++|+
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQL-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSCC-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcCCCcCHHHHhhCcccc-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999888999999997542 2234455566666667788889999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHH---hhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHHH
Q 001980 259 ILLLDEATSALDAGSESIVQEALD---RLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 335 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~~l~---~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 335 (987)
++||||||++||+.++..+.+.+. ++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+..+.|..++.
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 227 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLR 227 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHHH
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHHH
Confidence 999999999999999999999984 44458999999999999888999999999999999999999887777776654
Q ss_pred H
Q 001980 336 F 336 (987)
Q Consensus 336 ~ 336 (987)
.
T Consensus 228 ~ 228 (237)
T 2cbz_A 228 T 228 (237)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=433.24 Aligned_cols=226 Identities=31% Similarity=0.539 Sum_probs=196.8
Q ss_pred ccEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH---
Q 001980 743 GEIELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS--- 818 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~--- 818 (987)
.-|+++||+++|+.+. ..++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+..++.+.
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3699999999996432 246999999999999999999999999999999999999999999999999999998765
Q ss_pred HhcccEEEccccccccc-cHHHHhccCC--CCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 001980 819 LRLKIGLVQQEPALFAA-SIFDNIAYGK--EGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 819 lR~~i~~VpQdp~lF~g-TIreNL~~~~--~~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 891 (987)
+|++|+||||++.+|.. ||+||+.++. ...+ ++.+.++++.+++.++..+. ..+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~-----------~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY-----------PSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCC-----------TTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHHH
Confidence 47899999999998865 9999998652 1122 23467788888887654433 34799999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
++|||||+.+|+|||||||||+||+.+...|++.|++.. .|+|||+|||+++.+.. ||||+||++|+|++.|+++++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999999875 38999999999999876 999999999999999999999
Q ss_pred hcCCCchHHHH
Q 001980 969 VSRPDGAYSRL 979 (987)
Q Consensus 969 l~~~~g~f~~l 979 (987)
+.++...|.+-
T Consensus 252 ~~~p~~~~~~~ 262 (366)
T 3tui_C 252 FSHPKTPLAQK 262 (366)
T ss_dssp HSSCCSHHHHH
T ss_pred HhCCCcHHHHH
Confidence 98877666543
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-48 Score=437.22 Aligned_cols=228 Identities=26% Similarity=0.414 Sum_probs=212.0
Q ss_pred CccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhc
Q 001980 97 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD 176 (987)
Q Consensus 97 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 176 (987)
...|+++|++|+|+.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+...+++
T Consensus 17 ~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 3569999999999632 3458999999999999999999999999999999999998 9999999999999999988889
Q ss_pred ceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 177 QIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
+|+||+|++.+|+.||+||+.+... ...+++.++++.+++.+++...|.++++.+++.|.+|||||||||+|||||+++
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~~-~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~ 173 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNAA-HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTCC-SCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEcCCcccCccCHHHHhhhccc-cCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999986433 456788899999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhh
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
|++||||||||+||+.++..+.+.|+++..++|+|+|||+++.+..||||++|++|+|++.|++++++...
T Consensus 174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 174 AKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp CCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999887789999999999988889999999999999999999998754
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-48 Score=409.40 Aligned_cols=220 Identities=25% Similarity=0.425 Sum_probs=194.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..|+++|++|+|+.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 359999999999632 24589999999999999999999999999999999999999999999998 6
Q ss_pred eEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 178 IGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 178 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
|+|+||+|++|+.||+||+.++... ...+..+.++.+++.+.+..+|.++++.+++++.+||||||||++|||||+++|
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVSY-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSCC-CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCcccCCCHHHHhhccCCc-ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999999989999999997532 233455566667777888889999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHH-HhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHH
Q 001980 258 KILLLDEATSALDAGSESIVQEAL-DRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYAS 332 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 332 (987)
+++||||||++||+.+++.+.+.+ .++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+..+.|..
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 225 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSS 225 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHHH
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHH
Confidence 999999999999999999999874 555568999999999998877999999999999999999998765444433
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-48 Score=468.62 Aligned_cols=211 Identities=24% Similarity=0.371 Sum_probs=156.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHh-ccC----C---CCCc-------------
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIE-RFY----D---PTAG------------- 802 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~-rl~----~---p~~G------------- 802 (987)
.++++|++. .+|+||||+|++||.+||+|+||||||||+++|+ +.. . +..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 589999852 2699999999999999999999999999999854 221 1 1233
Q ss_pred eEEECCccCCCCC---H-------HHHh---------cccEEEcccccc---------------------c---------
Q 001980 803 KVMIDGKDIRRLN---L-------KSLR---------LKIGLVQQEPAL---------------------F--------- 833 (987)
Q Consensus 803 ~I~idG~di~~i~---l-------~~lR---------~~i~~VpQdp~l---------------------F--------- 833 (987)
.|.+||.++..-+ + +.+| +.++|+||...+ |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4889998885322 1 1222 335777775321 0
Q ss_pred -------------------------cccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCC-ccCCCCCCCChh
Q 001980 834 -------------------------AASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKT-PVGERGVQLSGG 887 (987)
Q Consensus 834 -------------------------~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt-~vge~G~~LSgG 887 (987)
..|+.+|+.+........+..++++..+ ++. ..+.....||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~g-----------L~~~~l~~~~~~LSGG 849 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVG-----------LGYMKLGQPATTLSGG 849 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHTT-----------CSSSBTTCCGGGCCHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHcC-----------CCcccccCchhhCCHH
Confidence 1245555554321111112233444433 333 345556689999
Q ss_pred HHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEE------eCC
Q 001980 888 QKQRIAIARAVLKNP---AILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVV------QDG 957 (987)
Q Consensus 888 QrQrlaLARAllr~p---~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~Iivl------~~G 957 (987)
||||++|||||+++| +||||||||++||+.+.+.+.+.|+++. +|.|||+|+|+++.+..||+|++| ++|
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G 929 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGG 929 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCC
Confidence 999999999999875 9999999999999999999999999875 589999999999999889999999 789
Q ss_pred EEEEecChhHHhcCCC
Q 001980 958 RIVEQGSHSELVSRPD 973 (987)
Q Consensus 958 ~ive~Gt~~eLl~~~~ 973 (987)
+|++.|+|+++++.+.
T Consensus 930 ~Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 930 QIVAVGTPEEVAEVKE 945 (972)
T ss_dssp SEEEEESHHHHHTCTT
T ss_pred EEEEecCHHHHHhCch
Confidence 9999999999987644
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-48 Score=417.48 Aligned_cols=215 Identities=28% Similarity=0.522 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC--CCCHHHHhc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--RLNLKSLRL 821 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~l~~lR~ 821 (987)
.|+++||+++|++. .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 49999999999643 35999999999999999999999999999999999999999999999999994 344567899
Q ss_pred ccEEEcccc--ccccccHHHHhccCC--CCCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 822 KIGLVQQEP--ALFAASIFDNIAYGK--EGATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 822 ~i~~VpQdp--~lF~gTIreNL~~~~--~~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
+|+||||+| .+|..|++||+.++. ...+. +.+.++++.+++.++... ...+||||||||++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDK-----------PTHCLSFGQKKRVA 153 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTS-----------BGGGSCHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------CcccCCHHHHHHHH
Confidence 999999998 578899999998652 12233 346677888887655332 23469999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
|||||+.+|++||||||||+||+.+...+.+.|+++. +|+|||+|||+++.+.. ||||++|++|++++.|+++++++
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999999875 38999999999999865 89999999999999999999986
Q ss_pred C
Q 001980 971 R 971 (987)
Q Consensus 971 ~ 971 (987)
+
T Consensus 234 ~ 234 (275)
T 3gfo_A 234 E 234 (275)
T ss_dssp H
T ss_pred C
Confidence 5
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-48 Score=410.67 Aligned_cols=215 Identities=31% Similarity=0.465 Sum_probs=182.5
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH----
Q 001980 745 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL---- 819 (987)
Q Consensus 745 I~f~~vsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l---- 819 (987)
|+++||+++|+.+. ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+..++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996432 2369999999999999999999999999999999999999999999999999999987764
Q ss_pred hcccEEEccccccccc-cHHHHhccCC-----CCCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 820 RLKIGLVQQEPALFAA-SIFDNIAYGK-----EGATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 820 R~~i~~VpQdp~lF~g-TIreNL~~~~-----~~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
|++|+||||+|.+|.. |++||+.++. ...+. +++.++++.+++.+.. .+ .....||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~----~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF------AN----HKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG------TT----CCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh------hh----CChhhCCHHHH
Confidence 4579999999999986 9999997631 12222 3456667777665432 12 23457999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEEEecChhH
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~e 967 (987)
||++|||||+++|++||||||||+||+.+...+.+.|++..+ ++|||+|||+++.+..||+|++|++|+|++.+++++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999999998753 899999999999887899999999999999998877
Q ss_pred Hh
Q 001980 968 LV 969 (987)
Q Consensus 968 Ll 969 (987)
+.
T Consensus 232 ~~ 233 (235)
T 3tif_A 232 FD 233 (235)
T ss_dssp --
T ss_pred hc
Confidence 64
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-47 Score=412.60 Aligned_cols=221 Identities=27% Similarity=0.475 Sum_probs=188.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC--CCHHHHhc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT--LQLRWLRD 176 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~~~ 176 (987)
.|+++|++|+|++. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+...+++
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 58999999999743 348999999999999999999999999999999999999999999999999852 23456788
Q ss_pred ceEEEcCCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 177 QIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 177 ~i~~v~Q~~--~l~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
+||||||+| .+|..||+||+.++... ...++..+.+ .+.++.+ |+.....+.+.+||||||||++||||
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~iAra 157 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRV-----DNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 157 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHH-----HHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchhhcCCcccCCHHHHHHHHHHHH
Confidence 999999998 57778999999986321 2222222211 2334444 66666778888999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhhh
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKAG 328 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 328 (987)
|+.+|++||||||||+||+.+++.+.+.|+++. + |+|+|+|||+++.+.. ||+|++|++|+++++|++++++....
T Consensus 158 L~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~ 236 (275)
T 3gfo_A 158 LVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKE 236 (275)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCHH
Confidence 999999999999999999999999999999885 3 8999999999999875 99999999999999999999876543
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=424.59 Aligned_cols=224 Identities=33% Similarity=0.533 Sum_probs=190.4
Q ss_pred CccEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH--
Q 001980 97 NGNIEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-- 173 (987)
Q Consensus 97 ~~~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~-- 173 (987)
...|+++|++++|+... ...+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..++...
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 34699999999997432 246899999999999999999999999999999999999999999999999999887654
Q ss_pred -HhcceEEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 174 -LRDQIGLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 174 -~~~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
+|++||||||++.+|+. ||+||+.++.. ....++..+.. .+.++.+ |+.......+.+|||||||||+|
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v-----~~lL~~v--gL~~~~~~~~~~LSGGqkQRVaI 174 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV-----TELLSLV--GLGDKHDSYPSNLSGGQKQRVAI 174 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHH-----HHHHHHH--TCGGGTTCCTTTSCHHHHHHHHH
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCchHhcCChhhCCHHHHHHHHH
Confidence 46789999999999876 99999998632 11222222111 1223333 66666778889999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
||||+.+|++||||||||+||+.+++.+.+.|+++. .|.|+|+|||+++.+.. ||||++|++|+++++|++++++..
T Consensus 175 ArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~ 254 (366)
T 3tui_C 175 ARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254 (366)
T ss_dssp HHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSS
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999999885 38999999999999876 999999999999999999999865
Q ss_pred h
Q 001980 327 A 327 (987)
Q Consensus 327 ~ 327 (987)
.
T Consensus 255 p 255 (366)
T 3tui_C 255 P 255 (366)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-48 Score=408.12 Aligned_cols=217 Identities=32% Similarity=0.464 Sum_probs=181.0
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH----
Q 001980 100 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL---- 174 (987)
Q Consensus 100 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---- 174 (987)
|+++|++|+|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 2458999999999999999999999999999999999999999999999999998887543
Q ss_pred hcceEEEcCCCCCchh-cHHHHHhcCCC-----CCCHHHHHHHHHHHhHHHHHHhCCCCCccc-ccCCCCCCChHHHHHH
Q 001980 175 RDQIGLVNQEPALFAT-TILENILYGKP-----EATMAEVEAAASAANAHSFITLLPNGYSTQ-VGERGVQLSGGQKQRI 247 (987)
Q Consensus 175 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~-~~~~g~~LSgGqkqRi 247 (987)
+++||||+|+|.+++. ||+||+.++.. ....++..+. +.+.++.+ |+... ..+.+.+||||||||+
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgGq~QRv 154 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKR-----ALECLKMA--ELEERFANHKPNQLSGGQQQRV 154 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHH-----HHHHHHHT--TCCGGGTTCCGGGSCHHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHH-----HHHHHHHC--CCChhhhhCChhhCCHHHHHHH
Confidence 3469999999999987 99999987421 1122222111 12233333 55443 3778889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHH
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 323 (987)
+|||||+.+|++|||||||++||+.+++.+.+.|+++. + |+|+|+|||+++....||+|++|++|++++.++.+++
T Consensus 155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 99999999999999999999999999999999999885 3 8999999999997777999999999999999887665
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-47 Score=405.44 Aligned_cols=220 Identities=33% Similarity=0.514 Sum_probs=190.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC--CCCHHHHhc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--RLNLKSLRL 821 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~l~~lR~ 821 (987)
.|+++||+++|.+ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999952 46999999999999999999999999999999999999999999999999985 345567889
Q ss_pred ccEEEccccccccc-cHHHHhccCC---CCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 822 KIGLVQQEPALFAA-SIFDNIAYGK---EGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 822 ~i~~VpQdp~lF~g-TIreNL~~~~---~~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
+|+||||++.+|.. |++||+.++. ...+ ++++.++++..++.++..+ ...+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHA-----------YPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-----------ChhhCCHHHHHHHH
Confidence 99999999999876 9999998742 1222 2456778888887665332 23479999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|||||+.+|++||||||||+||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|++++++++
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999875 48999999999999874 899999999999999999999876
Q ss_pred CCchHH
Q 001980 972 PDGAYS 977 (987)
Q Consensus 972 ~~g~f~ 977 (987)
+...|.
T Consensus 250 ~~~~~~ 255 (263)
T 2olj_A 250 PQHERT 255 (263)
T ss_dssp CCSHHH
T ss_pred cccHHH
Confidence 554443
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-47 Score=403.16 Aligned_cols=215 Identities=25% Similarity=0.441 Sum_probs=183.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH-hcc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-RLK 822 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l-R~~ 822 (987)
-|+++||+++|.+ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+...+ |++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999953 469999999999999999999999999999999999999999999999999998887665 556
Q ss_pred cEEEccccccccc-cHHHHhccCC-CCCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 823 IGLVQQEPALFAA-SIFDNIAYGK-EGATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 823 i~~VpQdp~lF~g-TIreNL~~~~-~~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
|+||||+|.+|.+ |++||+.++. +..+.+ .+.++++..+ |++........+||||||||++|||
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LSgGq~qrv~lAr 152 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFP----------RLKERLKQLGGTLSGGEQQMLAIGR 152 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCH----------HHHTTTTSBSSSSCHHHHHHHHHHH
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcc----------cHhhHhcCChhhCCHHHHHHHHHHH
Confidence 9999999999987 9999998753 211222 2333444332 2222334455689999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||+++|++||||||||+||+.+.+.+.+.|++.. +++|+|+|||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 153 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 9999999999999999999999999999999875 6899999999998775 5899999999999999999999854
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-47 Score=418.12 Aligned_cols=223 Identities=30% Similarity=0.531 Sum_probs=193.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC--CCHHHHhc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR--LNLKSLRL 821 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~--i~l~~lR~ 821 (987)
.|+++||+++|. +.++|+||||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.|+.+ ......|+
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 489999999995 3469999999999999999999999999999999999999999999999999932 22334578
Q ss_pred ccEEEcccccccc-ccHHHHhccCCCC--C----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 001980 822 KIGLVQQEPALFA-ASIFDNIAYGKEG--A----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 894 (987)
Q Consensus 822 ~i~~VpQdp~lF~-gTIreNL~~~~~~--~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 894 (987)
+|+||||++.+|. .|++|||.++... . .++.+.++++.+++.++..+.| ..||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-----------HELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG-----------GGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHH
Confidence 8999999999996 5999999987431 1 1345778888888877654443 4699999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||||+++|++||||||||+||+.+...+++.|.+.. .++|+|+|||+++.+.. ||||+||++|+|++.|+|++++++
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999998777653 48999999999998865 899999999999999999999998
Q ss_pred CCchHHHHH
Q 001980 972 PDGAYSRLL 980 (987)
Q Consensus 972 ~~g~f~~l~ 980 (987)
+...|...+
T Consensus 230 p~~~~~a~~ 238 (359)
T 3fvq_A 230 PADLDAALF 238 (359)
T ss_dssp CSCHHHHHH
T ss_pred cccHHHHHh
Confidence 877766544
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-47 Score=406.39 Aligned_cols=214 Identities=25% Similarity=0.424 Sum_probs=190.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|. +.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++...+.+.+|+.+
T Consensus 11 ~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 599999999995 34699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccccc-ccccHHHHhccCCC----CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHH
Q 001980 824 GLVQQEPAL-FAASIFDNIAYGKE----GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 898 (987)
Q Consensus 824 ~~VpQdp~l-F~gTIreNL~~~~~----~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAl 898 (987)
+|+||++.+ |..|++||+.++.. ...++.+.++++..++.++..+ .+ .+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~----~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-------DY----RVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTS-------BG----GGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcC-------Cc----ccCCHHHHHHHHHHHHH
Confidence 999999976 67899999987642 2234567888888887654332 22 46999999999999999
Q ss_pred cc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHh
Q 001980 899 LK------NPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 899 lr------~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl 969 (987)
++ +|++||||||||+||+.+...+.+.|++..+ ++|||+|||+++.+. .||||++|++|++++.|++++++
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999999999999999998753 579999999999986 48999999999999999999997
Q ss_pred cC
Q 001980 970 SR 971 (987)
Q Consensus 970 ~~ 971 (987)
..
T Consensus 237 ~~ 238 (266)
T 4g1u_C 237 NA 238 (266)
T ss_dssp CH
T ss_pred Cc
Confidence 53
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-47 Score=420.89 Aligned_cols=221 Identities=33% Similarity=0.518 Sum_probs=194.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|. +.++|+||||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+.. +++|
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 489999999995 34699999999999999999999999999999999999999999999999999988765 4789
Q ss_pred EEEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+||+|++.+|.. ||+|||.++.. ..+ ++.+.++++.+++.++..+.| .+||||||||++|||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----------~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGR 146 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hHCCHHHHHHHHHHH
Confidence 999999999965 99999987521 223 245677888888876544433 469999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
||+++|++||||||||+||+.+...+++.|+++.+ +.|+|+|||+++.+.. ||||+||++|+|++.|+|++++.++.
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~ 226 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCc
Confidence 99999999999999999999999999999998753 8999999999998865 89999999999999999999999887
Q ss_pred chHHHHH
Q 001980 974 GAYSRLL 980 (987)
Q Consensus 974 g~f~~l~ 980 (987)
..|...+
T Consensus 227 ~~~v~~~ 233 (381)
T 3rlf_A 227 DRFVAGF 233 (381)
T ss_dssp BHHHHHH
T ss_pred cHHHHHh
Confidence 7776543
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=399.83 Aligned_cols=219 Identities=25% Similarity=0.435 Sum_probs=186.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH-hcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL-RDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~ 177 (987)
.++++|++|+|++ .++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+ +++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 458999999999999999999999999999999999999999999999999988776544 456
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCC-CCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 178 IGLVNQEPALFAT-TILENILYGK-PEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
|+|+||++.+|+. |++||+.++. +....++..+.+ .+.++.++ |+....++.+.+||||||||++|||||+.
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999987 9999999864 211112222211 22344442 35556677888999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHHHh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999999885 5899999999998775 4999999999999999999988653
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-46 Score=400.67 Aligned_cols=213 Identities=23% Similarity=0.399 Sum_probs=188.5
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
+.|+++||+++|. +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++.. ....+|++
T Consensus 14 ~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 5799999999995 3469999999999999999999999999999999999999999999999999976 55678899
Q ss_pred cEEEccccccccc-cHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 823 IGLVQQEPALFAA-SIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 823 i~~VpQdp~lF~g-TIreNL~~~~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
|+||||+|.+|.+ |++||+.++.. ..+. +++.++++..++.++..+ + ..+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-------~----~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD-------R----VSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGS-------B----GGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcC-------C----hhhCCHHHHHHHHHH
Confidence 9999999998876 99999976421 1222 456778888888765443 2 346999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
|||+++|+|||||||||+||+.+...+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999999875 58999999999999876 89999999999999999999975
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-46 Score=415.72 Aligned_cols=219 Identities=29% Similarity=0.496 Sum_probs=183.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC--CHHHHhc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL--QLRWLRD 176 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~--~~~~~~~ 176 (987)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... .....++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999963 4599999999999999999999999999999999999999999999999998321 2223456
Q ss_pred ceEEEcCCCCCchh-cHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 177 QIGLVNQEPALFAT-TILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
+||||+|++.+|+. ||+|||.|+.... ..++..+.. .+.++.+ |+.....+.+.+|||||||||+|||||
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v-----~~~l~~~--gL~~~~~r~~~~LSGGq~QRValArAL 153 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRI-----EAMLELT--GISELAGRYPHELSGGQQQRAALARAL 153 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHH-----HHHHHHH--TCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHH-----HHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 89999999999976 9999999985421 112221111 1222332 666667788889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
+.+|++||||||||+||+..+..+.+.+.++. .|+|+|+|||+++++.. ||||++|++|+|++.|+++++....
T Consensus 154 ~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 154 APDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 99999999999999999999999998887663 48999999999998865 9999999999999999999998754
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-46 Score=401.28 Aligned_cols=219 Identities=28% Similarity=0.478 Sum_probs=189.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC----------
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR---------- 813 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~---------- 813 (987)
.|+++||+++|. +.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 499999999995 2469999999999999999999999999999999999999999999999999862
Q ss_pred CCH---HHHhcccEEEccccccccc-cHHHHhccCC---CCCC----HHHHHHHHHHcCchhh-HhhCCCcCCCccCCCC
Q 001980 814 LNL---KSLRLKIGLVQQEPALFAA-SIFDNIAYGK---EGAT----EAEVVEAARAANVHGF-VSALPNAYKTPVGERG 881 (987)
Q Consensus 814 i~l---~~lR~~i~~VpQdp~lF~g-TIreNL~~~~---~~~s----d~ei~~al~~a~l~~~-i~~lp~gldt~vge~G 881 (987)
++. ..+|++++||||++.+|.. |++||+.++. ...+ ++++.++++..++.++ .... .
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~ 151 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-----------P 151 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC-----------G
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC-----------c
Confidence 443 3568899999999998876 9999998632 1122 3456778888888776 4332 3
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEE
Q 001980 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRI 959 (987)
Q Consensus 882 ~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~i 959 (987)
.+||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|++.. +++|||+|||+++.+. .||+|++|++|++
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 4699999999999999999999999999999999999999999999875 4899999999999986 4899999999999
Q ss_pred EEecChhHHhcCCCchH
Q 001980 960 VEQGSHSELVSRPDGAY 976 (987)
Q Consensus 960 ve~Gt~~eLl~~~~g~f 976 (987)
++.|+++++++++...|
T Consensus 232 ~~~g~~~~~~~~~~~~~ 248 (262)
T 1b0u_A 232 EEEGDPEQVFGNPQSPR 248 (262)
T ss_dssp EEEECHHHHHHSCCSHH
T ss_pred EEeCCHHHHHhCcchHH
Confidence 99999999987654444
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-46 Score=400.92 Aligned_cols=213 Identities=30% Similarity=0.550 Sum_probs=188.1
Q ss_pred EEEEeEEEECCCCCC--ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 745 IELRHVDFAYPSRPD--VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~--~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
|+++||+++|+.... .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999952111 4699999999999999999999999999999999999999999999999998642 67889
Q ss_pred cEEEcccc--ccccccHHHHhccCCC-----CCCHHHHHHHHHHcCch--hhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 823 IGLVQQEP--ALFAASIFDNIAYGKE-----GATEAEVVEAARAANVH--GFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 823 i~~VpQdp--~lF~gTIreNL~~~~~-----~~sd~ei~~al~~a~l~--~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
|+||||+| .+|..|++||+.++.. ...++++.++++.+++. ++..+.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999997 5678999999987632 12356788899999987 7655433 469999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
|||||+++|+|||||||||+||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|++++++++
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999875 58999999999999876 899999999999999999999765
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-46 Score=401.73 Aligned_cols=214 Identities=25% Similarity=0.385 Sum_probs=186.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5899999999974 4599999999999999999999999999999999999999999999999999999988888899
Q ss_pred EEEcCCCCCc-hhcHHHHHhcCCCCCC----HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 179 GLVNQEPALF-ATTILENILYGKPEAT----MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 179 ~~v~Q~~~l~-~~tv~eni~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
+|++|++.++ +.||+||+.++..... .+++.++ ++.+ |+.........+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQV---------MAQT--DCLALAQRDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHH---------HHHT--TCSTTTTSBGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHH---------HHHc--CChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 9999999874 5699999998753211 1222222 3333 555555667789999999999999999
Q ss_pred cc------CCCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHH
Q 001980 254 LK------NPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 324 (987)
Q Consensus 254 ~~------~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 324 (987)
+. +|++||||||||+||+.+++.+.+.|+++. + ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 999999999999999999999999999885 3 5799999999999875 9999999999999999999986
Q ss_pred Hh
Q 001980 325 AK 326 (987)
Q Consensus 325 ~~ 326 (987)
..
T Consensus 237 ~~ 238 (266)
T 4g1u_C 237 NA 238 (266)
T ss_dssp CH
T ss_pred Cc
Confidence 53
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-46 Score=397.64 Aligned_cols=218 Identities=33% Similarity=0.519 Sum_probs=186.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC--CCCHHHHhc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK--TLQLRWLRD 176 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~~~ 176 (987)
.|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ..+...+++
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 5999999999963 35899999999999999999999999999999999999999999999999985 334456677
Q ss_pred ceEEEcCCCCCchh-cHHHHHhcCC-C--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 177 QIGLVNQEPALFAT-TILENILYGK-P--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~-tv~eni~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
+|+||+|++.+|+. ||+||+.++. . ....++..+ .+.+.++.+ |+.......+.+||||||||++||||
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~lAra 173 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEA-----KAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARA 173 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHH
Confidence 89999999999877 9999998852 1 112221111 122344444 66666777888999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|+.+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 174 L~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 174 LAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999885 48999999999999875 899999999999999999998654
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-46 Score=397.58 Aligned_cols=214 Identities=28% Similarity=0.442 Sum_probs=185.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL-RWLRDQ 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~ 177 (987)
.|+++|++|+|++ .++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ..++++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 358999999999999999999999999999999999999999999999999987664 345678
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCC--CC-------------HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCCh
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPE--AT-------------MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSG 241 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~--~~-------------~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSg 241 (987)
|+||+|++.+|+. ||+||+.++... .. ..+. ...+.+.++.+ |++....+.+.+|||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-----VEKAFKILEFL--KLSHLYDRKAGELSG 156 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHH-----HHHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHH-----HHHHHHHHHHc--CCchhhCCCchhCCH
Confidence 9999999998875 999999986422 11 1111 11223455555 777778888999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecC
Q 001980 242 GQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGT 319 (987)
Q Consensus 242 GqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 319 (987)
|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. +|+|||++||+++.+.. ||+|++|++|++++.|+
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeC
Confidence 99999999999999999999999999999999999999999885 48999999999999865 89999999999999999
Q ss_pred hHH
Q 001980 320 HEE 322 (987)
Q Consensus 320 ~~~ 322 (987)
+++
T Consensus 237 ~~~ 239 (257)
T 1g6h_A 237 GEE 239 (257)
T ss_dssp SHH
T ss_pred HHH
Confidence 988
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-46 Score=404.96 Aligned_cols=217 Identities=29% Similarity=0.450 Sum_probs=180.8
Q ss_pred cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhc
Q 001980 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 821 (987)
Q Consensus 742 ~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~ 821 (987)
.+.|+++||+|.| .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||
T Consensus 38 ~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99 (290)
T ss_dssp ------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------
T ss_pred CceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------
Confidence 3569999999864 2589999999999999999999999999999999999999999999998
Q ss_pred ccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 001980 822 KIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901 (987)
Q Consensus 822 ~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~ 901 (987)
+|+||||+|.+|.+|++||+. +.. ..+..+.++++..++.+++..+|.++++.+++.+.+||||||||++|||||+++
T Consensus 100 ~i~~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~ 177 (290)
T 2bbs_A 100 RISFCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177 (290)
T ss_dssp CEEEECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSC
T ss_pred EEEEEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCC
Confidence 499999999999999999998 532 345556677888899999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHH-HHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHH
Q 001980 902 PAILLLDEATSALDAESECVLQEAL-ERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRL 979 (987)
Q Consensus 902 p~ILlLDEaTS~LD~~te~~I~~~l-~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l 979 (987)
|++||||||||+||+.++..+.+.+ ++..+++|||+|||+++.+..||+|++|++|++++.|+|+++++. ...|.+.
T Consensus 178 p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~ 255 (290)
T 2bbs_A 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-RPDFSSK 255 (290)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH-CHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh-cHHHHHH
Confidence 9999999999999999999999874 444468999999999999988999999999999999999999764 3445443
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-46 Score=416.76 Aligned_cols=217 Identities=28% Similarity=0.461 Sum_probs=187.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++. ++.|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 3899999999973 4599999999999999999999999999999999999999999999999999887765 3579
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
|||+|++.+|+. ||+|||.|+.. ....++..+. ..+.++.+ |+.....+...+|||||||||+|||||+.
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~-----v~~~l~~~--~L~~~~~r~p~~LSGGqrQRVaiArAL~~ 150 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR-----VNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHH-----HHHHHHHT--TCGGGTTCCGGGSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhcCChhHCCHHHHHHHHHHHHHHc
Confidence 999999999976 99999998632 1122222211 12334444 66667788889999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
+|++||||||||+||+..+..+.+.|+++. + |.|+|+|||+++++.. ||||++|++|+|++.|+++++....
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 999999999999999999999999999885 3 8999999999998765 8999999999999999999997653
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=411.42 Aligned_cols=219 Identities=31% Similarity=0.543 Sum_probs=193.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|. +.++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++..++.. +++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 389999999995 34699999999999999999999999999999999999999999999999999887754 6789
Q ss_pred EEEccccccccc-cHHHHhccCCCC--CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFAA-SIFDNIAYGKEG--AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~g-TIreNL~~~~~~--~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+||||++.+|.. |++||+.++... .+ ++++.++++..++.++..+.| .+||||||||+||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVALAR 146 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999965 999999886421 12 245778888998877655443 469999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
||+++|++||||||||+||+.+...+++.|++..+ +.|+|+|||+++.+. .||||++|++|+|++.|+|+++++++.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~ 226 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPK 226 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999998753 899999999999875 589999999999999999999998877
Q ss_pred chHHH
Q 001980 974 GAYSR 978 (987)
Q Consensus 974 g~f~~ 978 (987)
..|..
T Consensus 227 ~~~~~ 231 (359)
T 2yyz_A 227 NMFVA 231 (359)
T ss_dssp BHHHH
T ss_pred cHHHH
Confidence 66644
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-46 Score=390.94 Aligned_cols=208 Identities=26% Similarity=0.408 Sum_probs=180.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH---Hh
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---LR 820 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~---lR 820 (987)
.|+++|++++|.+ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 4899999999953 46999999999999999999999999999999999999999999999999998887653 44
Q ss_pred -cccEEEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 821 -LKIGLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 821 -~~i~~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
++|+||||+|.+|. .|++||+.++.. ... ++++.++++..++.++.. ....+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLS-----------RKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTT-----------CCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHH
Confidence 78999999999886 599999976421 111 245667777777655432 22347999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSH 965 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~ 965 (987)
+|||||+.+|++||||||||+||+.+...+.+.|++.. +++|||+|||+++.+..||+|++|++|++++.|+.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEeee
Confidence 99999999999999999999999999999999999875 58999999999998877999999999999999863
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-46 Score=398.06 Aligned_cols=210 Identities=21% Similarity=0.380 Sum_probs=182.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH-HHhcc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK-SLRLK 822 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~-~lR~~ 822 (987)
.|+++||+++|.+ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++...+.. .+|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999953 3699999999999999999999999999999999999999999999999999887653 46788
Q ss_pred cEEEcccccccc-ccHHHHhccCCCC---------------CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCC
Q 001980 823 IGLVQQEPALFA-ASIFDNIAYGKEG---------------AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGV 882 (987)
Q Consensus 823 i~~VpQdp~lF~-gTIreNL~~~~~~---------------~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~ 882 (987)
|+||||++.+|. .|++||+.++... .. .+++.++++..++.++. .....
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~ 152 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-----------DRKAG 152 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT-----------TSBGG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhh-----------CCCch
Confidence 999999999886 6999999875321 11 23455666666665443 23345
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEE
Q 001980 883 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIV 960 (987)
Q Consensus 883 ~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~-~~D~Iivl~~G~iv 960 (987)
+||||||||++|||||+++|++||||||||+||+.+.+.+.+.|++.. +++|||+|||+++.+. .||+|++|++|+++
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 799999999999999999999999999999999999999999999875 4899999999999886 58999999999999
Q ss_pred EecChhH
Q 001980 961 EQGSHSE 967 (987)
Q Consensus 961 e~Gt~~e 967 (987)
+.|++++
T Consensus 233 ~~g~~~~ 239 (257)
T 1g6h_A 233 AEGRGEE 239 (257)
T ss_dssp EEEESHH
T ss_pred EEeCHHH
Confidence 9999999
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-46 Score=411.27 Aligned_cols=221 Identities=32% Similarity=0.544 Sum_probs=193.1
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
..|+++|++++|++ +.++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+. .|++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 36999999999942 2359999999999999999999999999999999999999999999999999987654 4788
Q ss_pred cEEEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 823 IGLVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 823 i~~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
|+||||++.+|.. |++||+.++.. ..+ ++++.++++..++.++..+.| .+||||||||++||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHHHHHH
Confidence 9999999999974 99999987521 122 345778888888877655443 46999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCC
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRP 972 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~ 972 (987)
|||+++|++||||||||+||+.+...+++.|++..+ +.|+|+|||+++.+.. ||||++|++|+|++.|+|+++++++
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999998753 8999999999998865 8999999999999999999999887
Q ss_pred CchHHH
Q 001980 973 DGAYSR 978 (987)
Q Consensus 973 ~g~f~~ 978 (987)
...|..
T Consensus 238 ~~~~~~ 243 (355)
T 1z47_A 238 GTLFVA 243 (355)
T ss_dssp SSHHHH
T ss_pred cchHHH
Confidence 666543
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-46 Score=413.42 Aligned_cols=219 Identities=38% Similarity=0.599 Sum_probs=191.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|++++|.+ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+++.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999952 3699999999999999999999999999999999999999999999999999887754 5789
Q ss_pred EEEccccccccc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~g-TIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+||||++.+|.. |++||+.++.. ..+ ++++.++++..++.++..+.| .+||||||||+||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalAr 146 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP-----------WQLSGGQQQRVAIAR 146 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999975 99999987521 122 245677888888876554433 469999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
||+++|++||||||||+||+.+...+++.|++..+ +.|+|+|||+++.+. .||+|++|++|+|++.|+|+++++++.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~ 226 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPK 226 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998753 899999999999875 589999999999999999999998876
Q ss_pred chHHH
Q 001980 974 GAYSR 978 (987)
Q Consensus 974 g~f~~ 978 (987)
..|..
T Consensus 227 ~~~~~ 231 (362)
T 2it1_A 227 YKFVG 231 (362)
T ss_dssp BHHHH
T ss_pred chHHH
Confidence 66644
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-46 Score=392.79 Aligned_cols=209 Identities=33% Similarity=0.503 Sum_probs=182.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++||+++|. + +|+|+||+|++ |.+||+||||||||||+++|.|+++|++|+|.+||.++.+.+ ..|++|+
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 68999999994 2 59999999999 999999999999999999999999999999999999997643 3578899
Q ss_pred EEccccccccc-cHHHHhccCCCCC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKEGA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~~~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
||||++.+|.. |++||+.++.... .++++.++++..++.++... ...+||||||||++|||||+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDR-----------KPARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTC-----------CGGGSCHHHHHHHHHHHHHT
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcC-----------ChhhCCHHHHHHHHHHHHHH
Confidence 99999999876 9999998764321 13456777777777654332 23479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcCC
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRP 972 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~~ 972 (987)
++|++||||||||+||+.+.+.+.+.|++..+ ++|||+|||+++.+. .||+|++|++|++++.|+++++++++
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999999999999998753 899999999999875 58999999999999999999998765
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-46 Score=402.05 Aligned_cols=214 Identities=24% Similarity=0.370 Sum_probs=185.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC--CCCHHHHhc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--RLNLKSLRL 821 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~l~~lR~ 821 (987)
.|+++||+++|.+ .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++. ..+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5999999999953 46999999999999999999999999999999999999999999999999998 778888999
Q ss_pred ccEEEcccccc-ccc--cHHHHhccCCC-------CCC---HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 822 KIGLVQQEPAL-FAA--SIFDNIAYGKE-------GAT---EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 822 ~i~~VpQdp~l-F~g--TIreNL~~~~~-------~~s---d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
+|+||||++.+ |.. |++||+.++.. ... .+++.++++..++.++.. .. ..+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~~----~~~LSgGq 166 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQ-------QY----IGYLSTGE 166 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTT-------SB----GGGSCHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhc-------CC----hhhCCHHH
Confidence 99999999875 555 99999987531 112 234667777777765432 22 34699999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeE--EEEecCchhhh-ccCEEEEEeCCEEEEecC
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTT--VLVAHRLSTIR-GVDCIGVVQDGRIVEQGS 964 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~-~~Tv--I~IaHRl~ti~-~~D~Iivl~~G~ive~Gt 964 (987)
|||++|||||+++|++|||||||++||+.+.+.+.+.|++..+ ++|| |+|||+++.+. .||+|++|++|++++.|+
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998753 7899 99999999985 589999999999999999
Q ss_pred hhHHhcC
Q 001980 965 HSELVSR 971 (987)
Q Consensus 965 ~~eLl~~ 971 (987)
+++++++
T Consensus 247 ~~~~~~~ 253 (279)
T 2ihy_A 247 VEDILTS 253 (279)
T ss_dssp HHHHCSH
T ss_pred HHHHhcc
Confidence 9999753
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-45 Score=389.11 Aligned_cols=211 Identities=27% Similarity=0.412 Sum_probs=179.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---Hh
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW---LR 175 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~~ 175 (987)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+... ++
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 4899999999963 45899999999999999999999999999999999999999999999999998776542 33
Q ss_pred -cceEEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 176 -DQIGLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 176 -~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
++|+|++|++.+|+. |++||+.++.. .....+.. ..+.+.++.+ |+.........+||||||||++|||
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAK-----ERGEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIAR 153 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHH
Confidence 679999999998875 99999987531 11111111 1122344544 6666677788899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCEEEEEeCCEEEEecC
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT 319 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 319 (987)
||+.+|+++||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+..||+|++|++|+++++|+
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 154 ALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999999885 5899999999999886799999999999999885
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=410.43 Aligned_cols=219 Identities=30% Similarity=0.521 Sum_probs=188.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|. +.++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++..++.. +++|
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 499999999995 24699999999999999999999999999999999999999999999999999887754 5789
Q ss_pred EEEcccccccc-ccHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+||||++.+|. .|++|||.++.. ..+. +++.++++..++.++..+.| .+||||||||+||||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalAr 154 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVAR 154 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999986 599999998743 1232 35678888888877655443 479999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
||+++|++||||||||+||+.+...+++.|++..+ +.|+|+|||+++.+. .||+|++|++|+|++.|+|++++.++.
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 234 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 234 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999998753 799999999999875 589999999999999999999998877
Q ss_pred chHHH
Q 001980 974 GAYSR 978 (987)
Q Consensus 974 g~f~~ 978 (987)
..|..
T Consensus 235 ~~~~a 239 (372)
T 1v43_A 235 SVFVA 239 (372)
T ss_dssp BHHHH
T ss_pred cHHHH
Confidence 66644
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=393.99 Aligned_cols=216 Identities=25% Similarity=0.401 Sum_probs=184.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ....++++|
T Consensus 15 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i 90 (256)
T 1vpl_A 15 AVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 90 (256)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred eEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcE
Confidence 5999999999963 459999999999999999999999999999999999999999999999999876 455677889
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
+|+||++.+++. ||+||+.++.. ....++..+ .+.+.++.+ |+.......+.+||||||||++|||||+.
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAraL~~ 163 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEE-----MVERATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMV 163 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHH-----HHHHHHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHTT
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999999877 99999987521 111111111 112223333 66666677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 164 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 164 NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999885 58999999999999876 89999999999999999998864
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-45 Score=408.21 Aligned_cols=217 Identities=30% Similarity=0.543 Sum_probs=191.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++||+++|. +. +|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+++. .|++|+
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 78999999994 24 8999999999999999999999999999999999999999999999999987654 478899
Q ss_pred EEccccccccc-cHHHHhccCCC---CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 001980 825 LVQQEPALFAA-SIFDNIAYGKE---GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900 (987)
Q Consensus 825 ~VpQdp~lF~g-TIreNL~~~~~---~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr 900 (987)
||||++.+|.. |++||+.++.. ...++++.++++..++.++..+.| .+||||||||+||||||++
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHHHHc
Confidence 99999999975 99999987521 112367888899988876654433 4699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPDGAYS 977 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~ 977 (987)
+|++||||||||+||+.+...+++.|++.. .+.|+|+|||+++.+. .||+|++|++|+|++.|+|+++++++...|.
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~ 224 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRV 224 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHHH
Confidence 999999999999999999999999999875 3899999999999875 5899999999999999999999988766664
Q ss_pred H
Q 001980 978 R 978 (987)
Q Consensus 978 ~ 978 (987)
.
T Consensus 225 a 225 (348)
T 3d31_A 225 A 225 (348)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=411.83 Aligned_cols=221 Identities=29% Similarity=0.491 Sum_probs=192.4
Q ss_pred cEEEEeEEEECCCCCCcc--ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC---HHH
Q 001980 744 EIELRHVDFAYPSRPDVV--VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKS 818 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~--vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---l~~ 818 (987)
.|+++||+++|.+ .+ +|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999952 35 999999999999999999999999999999999999999999999999987621 334
Q ss_pred HhcccEEEccccccccc-cHHHHhccCCCC--CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 001980 819 LRLKIGLVQQEPALFAA-SIFDNIAYGKEG--AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 891 (987)
Q Consensus 819 lR~~i~~VpQdp~lF~g-TIreNL~~~~~~--~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 891 (987)
.|++|+||||++.+|.. |++||+.++... .+ ++++.++++..++.++..+.| .+||||||||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSGGq~QR 148 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQR 148 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHH
Confidence 57899999999999975 999999886431 22 345778888888877655443 4699999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 892 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 892 laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
++|||||+++|++||||||||+||+.+...+++.|++..+ ++|+|+|||+++.+.. ||||++|++|+|++.|+|+++
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999998753 8999999999998765 899999999999999999999
Q ss_pred hcCCCchHHH
Q 001980 969 VSRPDGAYSR 978 (987)
Q Consensus 969 l~~~~g~f~~ 978 (987)
++++...|..
T Consensus 229 ~~~p~~~~~~ 238 (353)
T 1oxx_K 229 YDNPVSIQVA 238 (353)
T ss_dssp HHSCSSHHHH
T ss_pred HhCcccHHHH
Confidence 9887666643
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-45 Score=390.20 Aligned_cols=208 Identities=24% Similarity=0.382 Sum_probs=188.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
-|+++||+++ ++|+|+||+|++||.+||+||||||||||+++|.|+++|+ |+|.++|.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 3899999985 3899999999999999999999999999999999999999 9999999999988888999999
Q ss_pred EEEccccccccc-cHHHHhccCCC-CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 001980 824 GLVQQEPALFAA-SIFDNIAYGKE-GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901 (987)
Q Consensus 824 ~~VpQdp~lF~g-TIreNL~~~~~-~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~ 901 (987)
+||||++.+|.+ |++||+.++.. ..+++++.++++..++.++... ...+||||||||++|||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-----------STNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTS-----------BGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHHcC
Confidence 999999998865 99999987642 2247778899999988765432 2357999999999999999999
Q ss_pred CC-------EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhh-hccCEEEEEeCCEEEEecChhHHhc
Q 001980 902 PA-------ILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 902 p~-------ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti-~~~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
|+ +||||||||+||+.+.+.+.+.|++.. +++|+|+|||+++.+ ..||+|++|++|++++.|+++++++
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 999999999999999999999999875 589999999999998 4689999999999999999999975
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=394.78 Aligned_cols=218 Identities=30% Similarity=0.506 Sum_probs=184.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC----------
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT---------- 168 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~---------- 168 (987)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4899999999963 458999999999999999999999999999999999999999999999999862
Q ss_pred CCH---HHHhcceEEEcCCCCCchh-cHHHHHhcCC-C--CCCHHHHHHHHHHHhHHHHHHhCCCCCccc-ccCCCCCCC
Q 001980 169 LQL---RWLRDQIGLVNQEPALFAT-TILENILYGK-P--EATMAEVEAAASAANAHSFITLLPNGYSTQ-VGERGVQLS 240 (987)
Q Consensus 169 ~~~---~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~-~~~~g~~LS 240 (987)
.+. ..++++|+||+|++.+|+. ||+||+.++. . ....++..+ .+.+.++.+ |+... ....+.+||
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~LS 155 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARE-----RALKYLAKV--GIDERAQGKYPVHLS 155 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHH-----HHHHHHHHT--TCCHHHHTSCGGGSC
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHH-----HHHHHHHHc--CCCchhhcCCcccCC
Confidence 333 3456789999999999877 9999998842 1 112111111 122334444 66655 677788999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 241 gGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 156 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 235 (262)
T 1b0u_A 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235 (262)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999885 48999999999999865 8999999999999999
Q ss_pred ChHHHHHh
Q 001980 319 THEELIAK 326 (987)
Q Consensus 319 ~~~~l~~~ 326 (987)
+++++...
T Consensus 236 ~~~~~~~~ 243 (262)
T 1b0u_A 236 DPEQVFGN 243 (262)
T ss_dssp CHHHHHHS
T ss_pred CHHHHHhC
Confidence 99998754
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-45 Score=407.80 Aligned_cols=219 Identities=31% Similarity=0.481 Sum_probs=186.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 3899999999963 4589999999999999999999999999999999999999999999999999877653 4689
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 179 GLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
|||+|++.+|+. ||+|||.|+.......+-. ....+.+.++.+ |+.........+||||||||++|||||+.+|
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~---~~~~v~~~l~~~--~L~~~~~r~~~~LSgGq~QRvalArAL~~~P 152 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDE---VEKRVVEIARKL--LIDNLLDRKPTQLSGGQQQRVALARALVKQP 152 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHH---TTHHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHH---HHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999999999976 9999999975322111100 001122334444 6666677788899999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
++||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++++.. ||+|++|++|+|++.|+++++..+.
T Consensus 153 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 153 KVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999998853 8999999999998754 8999999999999999999997653
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-45 Score=406.71 Aligned_cols=218 Identities=31% Similarity=0.474 Sum_probs=186.3
Q ss_pred ccEEEEeEEEEC-CCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhc
Q 001980 98 GNIEFKNVTFSY-PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD 176 (987)
Q Consensus 98 ~~i~~~~~~~~y-~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 176 (987)
..|+++|++++| ++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++ .++
T Consensus 13 ~~l~~~~l~~~y~g~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r 87 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG---ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKR 87 (355)
T ss_dssp EEEEEEEEEECCTTS---TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGS
T ss_pred ceEEEEEEEEEEcCC---CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhC
Confidence 359999999999 53 348999999999999999999999999999999999999999999999999977654 357
Q ss_pred ceEEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 177 QIGLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
+|+||+|++.+|+. ||+|||.|+.. ....++..+ .+.+.++.+ |+.........+||||||||++|||||
T Consensus 88 ~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~r~~~~LSGGq~QRvalArAL 160 (355)
T 1z47_A 88 NVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDA-----RVRELLRFM--RLESYANRFPHELSGGQQQRVALARAL 160 (355)
T ss_dssp SEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 89999999999976 99999998632 112121111 122334444 666667778889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
+.+|++||||||||+||+.+++.+.+.|+++.+ |+|+|+|||+++++.. ||+|++|++|+|++.|+++++..+.
T Consensus 161 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 161 APRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp TTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999998853 8999999999998765 8999999999999999999997653
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-45 Score=397.01 Aligned_cols=211 Identities=26% Similarity=0.432 Sum_probs=174.7
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..++++|++|.+ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 39 ~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~ 100 (290)
T 2bbs_A 39 DSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 100 (290)
T ss_dssp -----------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------C
T ss_pred ceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------E
Confidence 469999999964 2489999999999999999999999999999999999999999999998 6
Q ss_pred eEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCC
Q 001980 178 IGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257 (987)
Q Consensus 178 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~ 257 (987)
|+|+||++.+|+.||+||+. +.. ....+..+.++..++.+.+..+|.++++.+++++.+||||||||++|||||+++|
T Consensus 101 i~~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p 178 (290)
T 2bbs_A 101 ISFCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 178 (290)
T ss_dssp EEEECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCC
T ss_pred EEEEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCC
Confidence 99999999999899999998 542 2233445566667777888899999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHH-HhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhh
Q 001980 258 KILLLDEATSALDAGSESIVQEAL-DRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAG 328 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 328 (987)
+++||||||++||+.+++.+.+.+ .++.+++|+|++||+++.+..||+|++|++|++++.|+++++.....
T Consensus 179 ~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 250 (290)
T 2bbs_A 179 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRP 250 (290)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHHCH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhhcH
Confidence 999999999999999999999864 45556899999999999887899999999999999999999875433
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-45 Score=397.94 Aligned_cols=217 Identities=24% Similarity=0.364 Sum_probs=185.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC--CCCHHHHh
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK--TLQLRWLR 175 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~~ 175 (987)
..|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++. ..+...++
T Consensus 20 ~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred ceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 35999999999963 35899999999999999999999999999999999999999999999999987 66777788
Q ss_pred cceEEEcCCCCC-chh--cHHHHHhcCCCC-------CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHH
Q 001980 176 DQIGLVNQEPAL-FAT--TILENILYGKPE-------ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 245 (987)
Q Consensus 176 ~~i~~v~Q~~~l-~~~--tv~eni~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkq 245 (987)
++|+|++|++.+ +.. ||+||+.++... ...+. . ..+.+.++.+ |+.........+|||||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~-~-----~~~~~~l~~~--gl~~~~~~~~~~LSgGqkq 168 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI-R-----NEAHQLLKLV--GMSAKAQQYIGYLSTGEKQ 168 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHH-H-----HHHHHHHHHT--TCGGGTTSBGGGSCHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHH-H-----HHHHHHHHHc--CChhHhcCChhhCCHHHHH
Confidence 899999999864 444 999999986421 01111 1 1122344554 6766777888899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC-CCeE--EEEcCCCCcccc-CCEEEEEeCCEEEEecChH
Q 001980 246 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV-GRTT--VVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE 321 (987)
Q Consensus 246 RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tv--i~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 321 (987)
|++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ |+|+ |+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 248 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998853 8999 999999999865 8999999999999999999
Q ss_pred HHHH
Q 001980 322 ELIA 325 (987)
Q Consensus 322 ~l~~ 325 (987)
++.+
T Consensus 249 ~~~~ 252 (279)
T 2ihy_A 249 DILT 252 (279)
T ss_dssp HHCS
T ss_pred HHhc
Confidence 8864
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-45 Score=392.47 Aligned_cols=213 Identities=29% Similarity=0.510 Sum_probs=181.1
Q ss_pred EEEEeEEEECCCCCC--ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 100 IEFKNVTFSYPSRPD--VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 100 i~~~~~~~~y~~~~~--~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
|+++|++|+|+.... .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++... .++++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 4589999999999999999999999999999999999999999999999988642 56778
Q ss_pred eEEEcCCC--CCchhcHHHHHhcCCCC-----CCHHHHHHHHHHHhHHHHHHhCCCCCc--ccccCCCCCCChHHHHHHH
Q 001980 178 IGLVNQEP--ALFATTILENILYGKPE-----ATMAEVEAAASAANAHSFITLLPNGYS--TQVGERGVQLSGGQKQRIA 248 (987)
Q Consensus 178 i~~v~Q~~--~l~~~tv~eni~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~--t~~~~~g~~LSgGqkqRia 248 (987)
|+|++|+| .+++.|++||+.++... ...+++.++++.. |++ ........+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFV-----------GLDFDSFKDRVPFFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHT-----------TCCHHHHTTCCGGGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHc-----------CcCCcccccCChhhCCHHHHHHHH
Confidence 99999996 45677999999987421 1123344444333 444 4455666799999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 249 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|||||+.+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999885 58999999999999876 899999999999999999988654
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-45 Score=408.37 Aligned_cols=216 Identities=34% Similarity=0.535 Sum_probs=185.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999963 3589999999999999999999999999999999999999999999999999877654 4679
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
|||+|++.+|+. ||+|||.|+.. ....++..+ .+.+.++.+ |+.........+||||||||++|||||+.
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~ 150 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDK-----KVREVAKML--HIDKLLNRYPWQLSGGQQQRVAIARALVK 150 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchHhhCChhhCCHHHHHHHHHHHHHHc
Confidence 999999999976 99999998632 111222111 122334444 66666778888999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+|++||||||||+||+..++.+.+.|+++.+ |+|+|+|||+++++.. ||+|++|++|+|++.|++++++.+
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 151 EPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp CCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998853 8999999999998754 899999999999999999998765
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-45 Score=393.29 Aligned_cols=210 Identities=23% Similarity=0.361 Sum_probs=175.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcc--CCCCCceEEECCccCCCCCHHHH-h
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERF--YDPTAGKVMIDGKDIRRLNLKSL-R 820 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl--~~p~~G~I~idG~di~~i~l~~l-R 820 (987)
-|+++||+++|.+ .++|+|+||+|++||.+||+||||||||||+++|.|+ ++|++|+|.+||.++...+.... |
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 3899999999953 4699999999999999999999999999999999999 89999999999999998887665 5
Q ss_pred cccEEEccccccccc-cHHHHhccCC----C-CCC----HHHHHHHHHHcCch-hhHhhCCCcCCCccCCCCCC-CChhH
Q 001980 821 LKIGLVQQEPALFAA-SIFDNIAYGK----E-GAT----EAEVVEAARAANVH-GFVSALPNAYKTPVGERGVQ-LSGGQ 888 (987)
Q Consensus 821 ~~i~~VpQdp~lF~g-TIreNL~~~~----~-~~s----d~ei~~al~~a~l~-~~i~~lp~gldt~vge~G~~-LSgGQ 888 (987)
..++||||+|.+|.+ |++||+.++. . ... ++++.++++..++. ++.. .++ .. |||||
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~~~----~~~LSgGq 148 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS-------RYL----NEGFSGGE 148 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGG-------SBT----TCC----H
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhc-------CCc----ccCCCHHH
Confidence 569999999999875 9999997532 1 111 23456677777763 3332 222 24 99999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc--cCEEEEEeCCEEEEecCh
Q 001980 889 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG--VDCIGVVQDGRIVEQGSH 965 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~--~D~Iivl~~G~ive~Gt~ 965 (987)
|||++|||||+++|++||||||||+||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|++
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999999999999999999999875 47899999999999886 599999999999999999
Q ss_pred hH
Q 001980 966 SE 967 (987)
Q Consensus 966 ~e 967 (987)
+.
T Consensus 229 ~~ 230 (250)
T 2d2e_A 229 EL 230 (250)
T ss_dssp HH
T ss_pred HH
Confidence 83
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-45 Score=409.50 Aligned_cols=219 Identities=29% Similarity=0.502 Sum_probs=191.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC------CCHH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR------LNLK 817 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~------i~l~ 817 (987)
.|+++||+++|. +.++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+ ++.
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 389999999995 3469999999999999999999999999999999999999999999999999876 554
Q ss_pred HHhcccEEEcccccccc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 001980 818 SLRLKIGLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 890 (987)
Q Consensus 818 ~lR~~i~~VpQdp~lF~-gTIreNL~~~~~--~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 890 (987)
.+++|+||||++.+|. .|++||+.++.. ..+ ++.+.++++..++.++..+.| .+|||||||
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~Q 146 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQ 146 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc-----------ccCCHHHHH
Confidence 3678999999999986 599999987521 122 245677888888876654433 469999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhH
Q 001980 891 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 891 rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~e 967 (987)
|+||||||+++|++||||||||+||+.+...+++.|++..+ +.|+|+|||+++.+. .||+|++|++|+|++.|+|++
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998753 899999999999886 589999999999999999999
Q ss_pred HhcCCCchHHH
Q 001980 968 LVSRPDGAYSR 978 (987)
Q Consensus 968 Ll~~~~g~f~~ 978 (987)
+++++...|..
T Consensus 227 l~~~p~~~~~~ 237 (372)
T 1g29_1 227 VYDKPANTFVA 237 (372)
T ss_dssp HHHSCSBHHHH
T ss_pred HHhCcccHHHH
Confidence 99887766644
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-45 Score=406.91 Aligned_cols=217 Identities=27% Similarity=0.440 Sum_probs=181.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...++. +++|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999963 4589999999999999999999999999999999999999999999999999877654 4679
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
|||+|++.+|+. ||+|||.|+... ...++..+ .+.+.++.+ |+.........+||||||||++|||||+.
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~ 158 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDK-----RVRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 158 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHH-----HHHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999976 999999998542 12222111 122344444 66667778889999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHHHhh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
+|++||||||||+||+..++.+.+.|+++.+ |.|+|+|||+++++. .||+|++|++|+|++.|+++++..+.
T Consensus 159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999999998853 899999999999875 48999999999999999999997653
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-45 Score=384.58 Aligned_cols=212 Identities=30% Similarity=0.442 Sum_probs=181.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
++++|++++|++ +|+|+||++++ |+++|+||||||||||+|+|+|+++|++|+|.++|.++...+ ..+++|+
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 689999999962 49999999999 999999999999999999999999999999999999986543 2366899
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 180 LVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
|+||++.+|+. |++||+.++........- ...+.+.++.+ |+.........+||||||||++|||||+.+|+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 146 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVER-----DRRVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHH-----HHHHHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchH-----HHHHHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999987 999999997532221111 11223445555 66666677888999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 259 ILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
++||||||++||+.+++.+.+.|+++. + |+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999884 3 8999999999998755 899999999999999999988653
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-45 Score=403.08 Aligned_cols=211 Identities=30% Similarity=0.499 Sum_probs=183.0
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++++|++ . +|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++. +++||
T Consensus 2 l~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (348)
T ss_dssp EEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchh--hCcEE
Confidence 789999999963 3 89999999999999999999999999999999999999999999999999876543 56899
Q ss_pred EEcCCCCCchh-cHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 180 LVNQEPALFAT-TILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
||+|++.+|+. ||+||+.|+.. ....+++. +.++.+ |++........+||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~---------~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVL---------DTARDL--KIEHLLDRNPLTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHH---------HHHHHT--TCTTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHH---------HHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999999987 99999998631 11112222 233333 55556677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
+|++||||||||+||+.+++.+.+.|+++. .|+|+|+|||+++++.. ||+|++|++|++++.|+++++..+.
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999884 38999999999998754 8999999999999999999997653
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-45 Score=406.54 Aligned_cols=219 Identities=29% Similarity=0.431 Sum_probs=185.6
Q ss_pred cEEEEeEEEECCCCCCcc--ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC---HHH
Q 001980 99 NIEFKNVTFSYPSRPDVI--IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ---LRW 173 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~--~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~---~~~ 173 (987)
.|+++|++++|++ .. +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999963 45 899999999999999999999999999999999999999999999999986521 222
Q ss_pred HhcceEEEcCCCCCchh-cHHHHHhcCCCCC--CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHH
Q 001980 174 LRDQIGLVNQEPALFAT-TILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250 (987)
Q Consensus 174 ~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialA 250 (987)
.+++||||+|++.+|+. ||+||+.|+.... ..++..+ .+.+.++.+ |+.........+||||||||++||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~~~~~~LSGGq~QRvalA 152 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK-----RVEEVAKIL--DIHHVLNHFPRELSGAQQQRVALA 152 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHH
Confidence 46789999999999976 9999999975321 2222111 122334444 666667778889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 251 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
|||+.+|++||||||||+||+..++.+.+.|+++.+ |+|+|+|||+++++.. ||+|++|++|++++.|+++++..+.
T Consensus 153 raL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 232 (353)
T 1oxx_K 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232 (353)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999998853 8999999999998765 8999999999999999999998653
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=383.66 Aligned_cols=208 Identities=21% Similarity=0.329 Sum_probs=182.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.++++|++|+ ++|+|+||++++||+++|+||||||||||+|+|+|+++|+ |+|.++|.++...+...++++|
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 3899999986 3899999999999999999999999999999999999999 9999999999888888888899
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCC-CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 179 GLVNQEPALFAT-TILENILYGKPE-ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
+|++|++.+|.. ||+||+.++... ...+++.+ .++.+ |+.......+.+||||||||++|||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLND---------VAGAL--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHH---------HHHHT--TCGGGTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHH---------HHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999998876 999999987421 12223333 23333 566666778889999999999999999999
Q ss_pred CC-------EEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHHH
Q 001980 257 PK-------ILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 257 ~~-------illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|+ +|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 999999999999999999999999884 5899999999999985 599999999999999999998864
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=406.67 Aligned_cols=216 Identities=27% Similarity=0.473 Sum_probs=183.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC------CCHH
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT------LQLR 172 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~------~~~~ 172 (987)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .++.
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 3899999999963 458999999999999999999999999999999999999999999999999865 4433
Q ss_pred HHhcceEEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH
Q 001980 173 WLRDQIGLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 173 ~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial 249 (987)
+++||||+|++.+|+. ||+||+.|+.. ....++..+. +.+.++.+ |+.........+||||||||++|
T Consensus 80 --~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~-----v~~~l~~~--~L~~~~~r~~~~LSGGq~QRval 150 (372)
T 1g29_1 80 --DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR-----VREVAELL--GLTELLNRKPRELSGGQRQRVAL 150 (372)
T ss_dssp --GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHH-----HHHHHHHH--TCGGGTTCCGGGSCHHHHHHHHH
T ss_pred --HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCchHhcCCcccCCHHHHHHHHH
Confidence 5689999999999976 99999998632 1122221111 12223333 66666677888999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
||||+.+|++||||||||+||+..++.+.+.|+++.+ |.|+|+|||+++++.. ||+|++|++|++++.|++++++.+
T Consensus 151 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999998853 8999999999998865 899999999999999999998764
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=390.24 Aligned_cols=215 Identities=24% Similarity=0.350 Sum_probs=180.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcc--CCCCCceEEECCccCCCCCHHHH-h
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERF--YDPTAGKVMIDGKDIRRLNLKSL-R 820 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl--~~p~~G~I~idG~di~~i~l~~l-R 820 (987)
.|+++||+++|. +.++|+|+||+|++||++||+||||||||||+++|.|+ ++|++|+|.+||.++...+.... |
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 599999999994 34699999999999999999999999999999999999 57899999999999988887665 4
Q ss_pred cccEEEccccccccc-cHHHHhccCC---------CCCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 001980 821 LKIGLVQQEPALFAA-SIFDNIAYGK---------EGATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 886 (987)
Q Consensus 821 ~~i~~VpQdp~lF~g-TIreNL~~~~---------~~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg 886 (987)
..++||||+|.+|.+ |+++|+.++. +..++ +.+.++++..++.+. -.+.+++ .+|||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~------~~~~~~~---~~LSg 167 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPED------LLTRSVN---VGFSG 167 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTT------TTTSBTT---TTCCH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChh------HhcCCcc---cCCCH
Confidence 569999999998876 8999986421 11232 235566666655321 1122221 25999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc--cCEEEEEeCCEEEEec
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG--VDCIGVVQDGRIVEQG 963 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~--~D~Iivl~~G~ive~G 963 (987)
|||||++|||||+++|+|||||||||+||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 168 Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g 247 (267)
T 2zu0_C 168 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247 (267)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999999999875 47999999999999876 7999999999999999
Q ss_pred ChhHHhc
Q 001980 964 SHSELVS 970 (987)
Q Consensus 964 t~~eLl~ 970 (987)
+++++..
T Consensus 248 ~~~~~~~ 254 (267)
T 2zu0_C 248 DFTLVKQ 254 (267)
T ss_dssp CTTHHHH
T ss_pred CHHHHhh
Confidence 9998743
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=385.13 Aligned_cols=214 Identities=25% Similarity=0.358 Sum_probs=173.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCEeCCCCCHHHH-h
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF--YDPNAGHVLLDNVDIKTLQLRWL-R 175 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~-~ 175 (987)
.++++|++|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.++...+.... +
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 3899999999963 4599999999999999999999999999999999998 88999999999999988776554 4
Q ss_pred cceEEEcCCCCCchh-cHHHHHhcCCC---C--CCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCC-CChHHHHHH
Q 001980 176 DQIGLVNQEPALFAT-TILENILYGKP---E--ATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQ-LSGGQKQRI 247 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~-tv~eni~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~-LSgGqkqRi 247 (987)
..++|++|+|.+|+. |++||+.++.. . ....+..+ .+.+.++.+ |++ ........+ ||||||||+
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGqkQrv 152 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWT-----KVKKALELL--DWDESYLSRYLNEGFSGGEKKRN 152 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHH-----HHHHHHHHH--TCCGGGGGSBTTCC----HHHHH
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHHHHHH
Confidence 569999999999876 99999987421 0 11111111 112233333 553 344556667 999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc--CCEEEEEeCCEEEEecChHH
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN--VDTVAVIQQGQVVETGTHEE 322 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~--~d~i~~l~~G~i~~~g~~~~ 322 (987)
+|||||+++|+++||||||++||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++.
T Consensus 153 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 153 EILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999999999999885 48999999999999876 49999999999999999873
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=385.52 Aligned_cols=207 Identities=21% Similarity=0.379 Sum_probs=181.8
Q ss_pred EEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 745 IELRHVDFAYPSR-PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 745 I~f~~vsf~Y~~~-~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
|+++|++++|++. ...++|+|+||+|+ ||++||+||||||||||+++|.|++ |++|+|.++|.++... .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999531 01469999999999 9999999999999999999999999 9999999999998765 33 7889
Q ss_pred E-EEccccccccccHHHHhccCCC--CCCHHHHHHHHHHcCch-hhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 824 G-LVQQEPALFAASIFDNIAYGKE--GATEAEVVEAARAANVH-GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 824 ~-~VpQdp~lF~gTIreNL~~~~~--~~sd~ei~~al~~a~l~-~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
+ ||||+|.+ ..|++||+.++.. ...++++.++++..++. +... ....+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILR-----------RKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGG-----------SBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 9999999986432 34567788888888776 5432 234579999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccC-EEEEEeCCEEEEecChhHHhc
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVD-CIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~-~~D-~Iivl~~G~ive~Gt~~eLl~ 970 (987)
++|++|||||||++||+.+.+.+.+.|++..+ |+|+|||+++.+. .|| +|++|++|++++.|+++++.+
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999998754 9999999999875 589 999999999999999999974
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-43 Score=379.51 Aligned_cols=216 Identities=23% Similarity=0.299 Sum_probs=180.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC--CCCCccEEEECCEeCCCCCHHHH-h
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF--YDPNAGHVLLDNVDIKTLQLRWL-R 175 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~-~ 175 (987)
.|+++|++|+|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.++...+.... +
T Consensus 20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 5999999999963 4599999999999999999999999999999999999 57999999999999987776554 4
Q ss_pred cceEEEcCCCCCchh-cHHHHHhcCC---------CCCCHHHHHHHHHHHhHHHHHHhCCCCCcc-cccCCCC-CCChHH
Q 001980 176 DQIGLVNQEPALFAT-TILENILYGK---------PEATMAEVEAAASAANAHSFITLLPNGYST-QVGERGV-QLSGGQ 243 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~-tv~eni~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~~~~g~-~LSgGq 243 (987)
..|+|++|+|.+|+. |++||+.++. +....++..+ .+.+.++.+ |+.+ ....... +|||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq 169 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGE 169 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHH
Confidence 469999999999877 9999997531 1111111111 123345554 6654 3445554 599999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc--CCEEEEEeCCEEEEecCh
Q 001980 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN--VDTVAVIQQGQVVETGTH 320 (987)
Q Consensus 244 kqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~--~d~i~~l~~G~i~~~g~~ 320 (987)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECT
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999999999885 48999999999999875 799999999999999998
Q ss_pred HHHH
Q 001980 321 EELI 324 (987)
Q Consensus 321 ~~l~ 324 (987)
+++.
T Consensus 250 ~~~~ 253 (267)
T 2zu0_C 250 TLVK 253 (267)
T ss_dssp THHH
T ss_pred HHHh
Confidence 8764
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-44 Score=381.48 Aligned_cols=208 Identities=25% Similarity=0.385 Sum_probs=178.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|++ +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|. +|++|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 4899999999951 23699999999999999999999999999999999999999999998 36789
Q ss_pred EEEccccccc-cccHHHHhccCCC---C----CC---HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 824 GLVQQEPALF-AASIFDNIAYGKE---G----AT---EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 824 ~~VpQdp~lF-~gTIreNL~~~~~---~----~s---d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
+||||+|.+| ..|++||+.++.. . .. ++++.++++..++.++..+ ...+||||||||+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~qrv 137 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKR-----------EFTSLSGGQRQLI 137 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTS-----------BGGGSCHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcC-----------ChhhCCHHHHHHH
Confidence 9999999887 6799999987531 0 12 3457788888888765433 2347999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhHHh
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~-~~D~Iivl~~G~ive~Gt~~eLl 969 (987)
+|||||+++|+|||||||||+||+.+...+.+.|++..+ ++|||+|||+++.+. .||+|++|++|+ ++.|++++++
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 999999999999999999999999999999999998753 899999999999985 589999999999 9999999997
Q ss_pred cCCCchHHHHH
Q 001980 970 SRPDGAYSRLL 980 (987)
Q Consensus 970 ~~~~g~f~~l~ 980 (987)
+. ..+.+.+
T Consensus 217 ~~--~~~~~~~ 225 (253)
T 2nq2_C 217 TS--ENLTALF 225 (253)
T ss_dssp CH--HHHHHHH
T ss_pred Cc--HHHHHHh
Confidence 53 2344444
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-44 Score=381.55 Aligned_cols=207 Identities=17% Similarity=0.300 Sum_probs=178.0
Q ss_pred EEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 100 IEFKNVTFSYPSR-PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 100 i~~~~~~~~y~~~-~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
++++|++++|++. ...++|+|+||+++ |++++|+||||||||||+|+|+|++ |++|+|.++|.++... .. +++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999631 01458999999999 9999999999999999999999999 9999999999988654 22 6689
Q ss_pred E-EEcCCCCCchhcHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHHHHHHHHHhc
Q 001980 179 G-LVNQEPALFATTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 179 ~-~v~Q~~~l~~~tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+ |+||+|.+ +.|++||+.++.+ ....+++. +.++.+ |++ ...++++.+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~---------~~l~~~--gl~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFL---------EMLKAL--KLGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHH---------HHHHHT--TCCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHH---------HHHHHc--CCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 7799999987532 12222332 334444 676 7778888999999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccc-cCC-EEEEEeCCEEEEecChHHHHH
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIR-NVD-TVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d-~i~~l~~G~i~~~g~~~~l~~ 325 (987)
.+|+++||||||++||+.+++.+.+.|+++.+ |+|++||+++.+. .|| ++++|++|++++.|+++++.+
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999998854 9999999999876 489 999999999999999998864
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-43 Score=376.60 Aligned_cols=204 Identities=27% Similarity=0.399 Sum_probs=172.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+ +++|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-------------~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------YQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-------------CSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-------------eccE
Confidence 4899999999962 235899999999999999999999999999999999999999999983 4579
Q ss_pred EEEcCCCCCc-hhcHHHHHhcCCCC------CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 179 GLVNQEPALF-ATTILENILYGKPE------ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 179 ~~v~Q~~~l~-~~tv~eni~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
+|+||++.++ ..||+||+.++... .......+ .+.+.++.+ |+.......+.+||||||||++|||
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lAr 141 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQ-----VAMQALDYL--NLTHLAKREFTSLSGGQRQLILIAR 141 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHH-----HHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHH-----HHHHHHHHc--CChHHhcCChhhCCHHHHHHHHHHH
Confidence 9999999888 45999999986421 00111111 112334444 6666677788899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCccc-cCCEEEEEeCCEEEEecChHHHHH
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
||+.+|++|||||||++||+.+++.+.+.|.++. + |+|+|++||+++.+. .||++++|++|+ ++.|+++++..
T Consensus 142 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 142 AIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 9999999999999999999999999999999885 3 899999999999885 599999999999 99999998864
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-43 Score=364.16 Aligned_cols=194 Identities=16% Similarity=0.295 Sum_probs=164.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.|
T Consensus 10 ~l~~~~ls~~y~~----~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESSS----EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeCC----eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 5999999999963 5999999999999999999999999999999999999999999999999885 257789
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCC----CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 179 GLVNQEPALFAT-TILENILYGKP----EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
+|+||+|.+|+. ||+||+.++.. ....+++.+ .++.+ |++.. ++.+.+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~---------~l~~~--gl~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMD---------ALESV--EVLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHH---------HHHHT--TCCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHH---------HHHHc--CCCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999999877 99999987521 111222322 33444 66666 778889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEE
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQV 314 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i 314 (987)
+.+|+++||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|+ +.+|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 99999999999999999999999999999875 48999999999999887 56655 555655
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-43 Score=365.92 Aligned_cols=196 Identities=19% Similarity=0.335 Sum_probs=167.9
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
..|+++||+++|+ + ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. .+|++
T Consensus 9 ~~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~ 79 (214)
T 1sgw_A 9 SKLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGK 79 (214)
T ss_dssp CEEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGG
T ss_pred ceEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCc
Confidence 3699999999994 3 6999999999999999999999999999999999999999999999999986 36889
Q ss_pred cEEEccccccccc-cHHHHhccCC---C-CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 823 IGLVQQEPALFAA-SIFDNIAYGK---E-GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 823 i~~VpQdp~lF~g-TIreNL~~~~---~-~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
++||||+|.+|.+ |++||+.++. . ...++++.++++..++.++ ...+.+||||||||++||||
T Consensus 80 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~------------~~~~~~LSgGqkqrv~lara 147 (214)
T 1sgw_A 80 IFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL------------KKKLGELSQGTIRRVQLAST 147 (214)
T ss_dssp EEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT------------TSBGGGSCHHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC------------CCChhhCCHHHHHHHHHHHH
Confidence 9999999999876 9999998642 1 2235677788887766543 23345799999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEEeCCEE
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGRI 959 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~Iivl~~G~i 959 (987)
|+++|++|||||||++||+.+...+.+.|++.. +++|||++||+++.+..++..+++..|+|
T Consensus 148 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~~~ 210 (214)
T 1sgw_A 148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYSTKI 210 (214)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC--
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCCcc
Confidence 999999999999999999999999999999875 47899999999999987544445666766
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=376.07 Aligned_cols=170 Identities=16% Similarity=0.031 Sum_probs=123.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
++.+++++.|++- ..+|.+ .|++|+.++|+|++|||||||++.+++...|. |. +.+.
T Consensus 258 ~~~~~l~~g~~~l--d~vL~g---~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~ 314 (525)
T 1tf7_A 258 SSNVRVSSGVVRL--DEMCGG---GFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAIL 314 (525)
T ss_dssp CCCCEECCSCHHH--HHHTTS---SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEE
T ss_pred cccceeecChHHH--HHHhCC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEE
Confidence 3456777666320 124444 89999999999999999999999999998875 43 1245
Q ss_pred EEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 001980 825 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 904 (987)
Q Consensus 825 ~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~I 904 (987)
+++|++. .+++.|.... ..+-++ +...++..+. ......|||||+||+++||++..+|++
T Consensus 315 ~~~ee~~---~~l~~~~~~~--g~~~~~----~~~~g~~~~~-----------~~~p~~LS~g~~q~~~~a~~l~~~p~l 374 (525)
T 1tf7_A 315 FAYEESR---AQLLRNAYSW--GMDFEE----MERQNLLKIV-----------CAYPESAGLEDHLQIIKSEINDFKPAR 374 (525)
T ss_dssp EESSSCH---HHHHHHHHTT--SCCHHH----HHHTTSEEEC-----------CCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEeCCH---HHHHHHHHHc--CCCHHH----HHhCCCEEEE-----------EeccccCCHHHHHHHHHHHHHhhCCCE
Confidence 6677762 2455554211 122222 1222222221 223356999999999999999999999
Q ss_pred EEEeCCCCCCCHH-----HHHHHHHHHHHHc-CCCeEEEEecCc----------hhhhc-cCEEEEEeCCE
Q 001980 905 LLLDEATSALDAE-----SECVLQEALERLM-RGRTTVLVAHRL----------STIRG-VDCIGVVQDGR 958 (987)
Q Consensus 905 LlLDEaTS~LD~~-----te~~I~~~l~~~~-~~~TvI~IaHRl----------~ti~~-~D~Iivl~~G~ 958 (987)
||+| ||++||.. ..+.+.+.++... .++|+|+|+|.. ..+.. ||+|++|++|+
T Consensus 375 lilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 375 IAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999 99999999 8888888887764 589999999998 66654 79999999886
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=353.09 Aligned_cols=220 Identities=19% Similarity=0.259 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCc
Q 001980 695 ANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQ 774 (987)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge 774 (987)
..++..+...+..+.++..+.+|+.++++.+++.... . ....+..+.|+++||+|+|+ .++|+|+||+|++|+
T Consensus 55 ~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~--~-~~~~~~~~~i~~~~vs~~y~----~~vL~~vsl~i~~Ge 127 (305)
T 2v9p_A 55 AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATG--E-GSWKSILTFFNYQNIELITF----INALKLWLKGIPKKN 127 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCS--S-CCTHHHHHHHHHTTCCHHHH----HHHHHHHHHTCTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC--C-CcccccCCeEEEEEEEEEcC----hhhhccceEEecCCC
Confidence 4677788888888889999999999998765432211 1 11122345699999999995 369999999999999
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHH-HhccCCCCCCHHHH
Q 001980 775 SQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD-NIAYGKEGATEAEV 853 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIre-NL~~~~~~~sd~ei 853 (987)
++|||||||||||||+++|.|++ +|+| +++++|+|.+|.+|+++ ||.++ +++++
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~~ni~~~-~~~~~--- 182 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLADTRAALV-DDATH--- 182 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTTCSCEEE-EEECH---
T ss_pred EEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHHHhhccC-ccccH---
Confidence 99999999999999999999999 8998 45789999999999998 99875 34443
Q ss_pred HHHHHHcCchhhHhh-CCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCC
Q 001980 854 VEAARAANVHGFVSA-LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG 932 (987)
Q Consensus 854 ~~al~~a~l~~~i~~-lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~ 932 (987)
++++++.. +|+|+| |.+|||||||| |||++++|+||| ||+||+.+++.|+.
T Consensus 183 -------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-------- 234 (305)
T 2v9p_A 183 -------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-------- 234 (305)
T ss_dssp -------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG--------
T ss_pred -------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------
Confidence 23456666 888988 67899999999 999999999999 99999999998862
Q ss_pred CeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhhh
Q 001980 933 RTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH 984 (987)
Q Consensus 933 ~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q~ 984 (987)
++||++++..||+| ||++|+|++.|+|++| ++.|+++|..+.
T Consensus 235 -----ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~~~~ 276 (305)
T 2v9p_A 235 -----LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWGRLD 276 (305)
T ss_dssp -----GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTTTTT
T ss_pred -----HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHHHcc
Confidence 29999999999999 9999999999999999 578999987653
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-35 Score=346.63 Aligned_cols=202 Identities=24% Similarity=0.323 Sum_probs=167.3
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..++++|++++|++ ..|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++ .+
T Consensus 356 ~~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~ 418 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LT 418 (607)
T ss_dssp EEEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CC
T ss_pred eEEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eE
Confidence 35899999999963 26899999999999999999999999999999999999999999762 37
Q ss_pred eEEEcCCCCC-chhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 178 IGLVNQEPAL-FATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 178 i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|+|+||++.+ ++.||.||+..... ..... .....+.++.+ |+.........+||||||||++|||||+++
T Consensus 419 i~~v~Q~~~~~~~~tv~e~~~~~~~----~~~~~---~~~~~~~l~~~--~l~~~~~~~~~~LSGGe~QRv~iAraL~~~ 489 (607)
T 3bk7_A 419 VAYKPQYIKAEYEGTVYELLSKIDS----SKLNS---NFYKTELLKPL--GIIDLYDRNVEDLSGGELQRVAIAATLLRD 489 (607)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHHH----HHHHC---HHHHHHTHHHH--TCTTTTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred EEEEecCccCCCCCcHHHHHHhhhc----cCCCH---HHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 9999999876 45699999875300 00000 00112223333 555556777889999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeC--CEEEEecChHHHHH
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQ--GQVVETGTHEELIA 325 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 325 (987)
|++|||||||++||+.++..+.+.|+++. .|+|+|+|||+++++.. ||||++|++ |++...|++++++.
T Consensus 490 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999999999999999999999874 48999999999999875 899999986 88888999988765
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-35 Score=344.53 Aligned_cols=202 Identities=24% Similarity=0.321 Sum_probs=168.1
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..++++|+++.|++ ..|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++ .+
T Consensus 286 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~ 348 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LT 348 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CC
T ss_pred eEEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ce
Confidence 35899999999963 26899999999999999999999999999999999999999999862 36
Q ss_pred eEEEcCCCCC-chhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 178 IGLVNQEPAL-FATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 178 i~~v~Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
|+|+||++.. ++.||.||+..... .... ......+.++.+ |+.........+||||||||++|||||+.+
T Consensus 349 i~~v~Q~~~~~~~~tv~~~~~~~~~----~~~~---~~~~~~~~l~~~--~l~~~~~~~~~~LSGGe~qrv~lAraL~~~ 419 (538)
T 1yqt_A 349 VAYKPQYIKADYEGTVYELLSKIDA----SKLN---SNFYKTELLKPL--GIIDLYDREVNELSGGELQRVAIAATLLRD 419 (538)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHHH----HHHT---CHHHHHHTTTTT--TCGGGTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred EEEEecCCcCCCCCcHHHHHHhhhc----cCCC---HHHHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 9999999876 45699998864200 0000 001112334444 666667788889999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeC--CEEEEecChHHHHH
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQ--GQVVETGTHEELIA 325 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 325 (987)
|++|||||||++||+.++..+.+.|+++. .|+|+|+|||+++++.. ||||++|++ |+++..|++++++.
T Consensus 420 p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999999874 48999999999999875 899999986 78888999988764
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=338.23 Aligned_cols=201 Identities=18% Similarity=0.227 Sum_probs=167.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
..++++|+++.|++ ..|++.||++++||+++|+||||||||||+++|+|+++|++|+|.+++ ..
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~ 331 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QI 331 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CC
T ss_pred ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------ee
Confidence 35899999999963 358888999999999999999999999999999999999999999876 36
Q ss_pred eEEEcCCCCC-chhcHHHHHhcCCCCC---CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 178 IGLVNQEPAL-FATTILENILYGKPEA---TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 178 i~~v~Q~~~l-~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
++|++|++.. +..||+||+.+..... ....+ .+.++.+ |+.........+|||||||||+|||||
T Consensus 332 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~---------~~~l~~~--~l~~~~~~~~~~LSGGq~QRv~iAraL 400 (538)
T 3ozx_A 332 LSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFF---------EEVTKRL--NLHRLLESNVNDLSGGELQKLYIAATL 400 (538)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHH---------HHTTTTT--TGGGCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred eEeechhcccccCCCHHHHHHHhhhhccchhHHHH---------HHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999865 4679999998642211 11111 1223333 666667778889999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeC--CEEEEecChHHHHH
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQ--GQVVETGTHEELIA 325 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 325 (987)
+.+|++|||||||++||+.++..+.+.|+++. .|+|+|+||||++++.. ||||++|++ |.+...+++.++..
T Consensus 401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 99999999999999999999999999999885 48999999999999876 899999986 55666777666543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-33 Score=330.09 Aligned_cols=198 Identities=24% Similarity=0.352 Sum_probs=162.4
Q ss_pred EeEEEECCCCCCccceeeeeEEEeCC-----cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 103 KNVTFSYPSRPDVIIFRDFSIFFPAG-----KTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 103 ~~~~~~y~~~~~~~~l~~i~l~i~~G-----~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
++++|+|++. ..+++++||++.+| |+++|+||||||||||+++|+|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 5677888642 34789999999998 7899999999999999999999999999973 11 236
Q ss_pred eEEEcCCCCC-chhcHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 178 IGLVNQEPAL-FATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 178 i~~v~Q~~~l-~~~tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
++|++|++.. |+.|+++|+...... ...+...++ ++.+ |+.........+|||||||||+|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~---------l~~l--~l~~~~~~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDV---------VKPL--RIDDIIDQEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHT---------HHHH--TSTTTSSSBSSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHH---------HHHc--CChhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999754 577999998643221 122222222 2222 5555567788899999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeC--CEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQ--GQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~~ 326 (987)
.+|+||||||||++||+.++..+.+.|+++. .|+|+|+|||+++++.. ||||++|++ |+++..|++++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999999874 48999999999999876 899999986 899999999999875
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.9e-33 Score=339.32 Aligned_cols=206 Identities=26% Similarity=0.380 Sum_probs=140.4
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHH---------------------HHHhccCCCC-------CceEEECCccCC
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVI---------------------ALIERFYDPT-------AGKVMIDGKDIR 812 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~---------------------~lL~rl~~p~-------~G~I~idG~di~ 812 (987)
.+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.++.
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 589999999999999999999999999998 8889999998 556677776654
Q ss_pred CCCHHHHhcccEEEccccccc--------------------cccHHHHhccCCC-CCC--HHHH-----HH------HHH
Q 001980 813 RLNLKSLRLKIGLVQQEPALF--------------------AASIFDNIAYGKE-GAT--EAEV-----VE------AAR 858 (987)
Q Consensus 813 ~i~l~~lR~~i~~VpQdp~lF--------------------~gTIreNL~~~~~-~~s--d~ei-----~~------al~ 858 (987)
.. .|+.+++|+|.+.++ ..|++||+.+... ... +.+. .+ .++
T Consensus 112 ~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 112 RN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp -------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHH
T ss_pred cc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 32 255667777765432 4589999976421 001 1111 11 122
Q ss_pred HcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeE
Q 001980 859 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA--ILLLDEATSALDAESECVLQEALERLM-RGRTT 935 (987)
Q Consensus 859 ~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~--ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~Tv 935 (987)
..++.+. -++.++ ..||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. +++||
T Consensus 188 ~~gL~~~------~~~~~~----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tv 257 (670)
T 3ux8_A 188 NVGLDYL------TLSRSA----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTL 257 (670)
T ss_dssp HTTCTTC------CTTCBG----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEE
T ss_pred HcCCchh------hhcCCc----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEE
Confidence 2222211 123334 4699999999999999999988 999999999999999999999999875 58999
Q ss_pred EEEecCchhhhccCEEEEE------eCCEEEEecChhHHhcCCCchHHHHH
Q 001980 936 VLVAHRLSTIRGVDCIGVV------QDGRIVEQGSHSELVSRPDGAYSRLL 980 (987)
Q Consensus 936 I~IaHRl~ti~~~D~Iivl------~~G~ive~Gt~~eLl~~~~g~f~~l~ 980 (987)
|+|+|+++.+..||+|++| ++|++++.|+++++.+.+...+....
T Consensus 258 i~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 308 (670)
T 3ux8_A 258 IVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYL 308 (670)
T ss_dssp EEECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHHHHH
T ss_pred EEEeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCchhHHHHHh
Confidence 9999999998889999999 89999999999999987554444433
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.98 E-value=8.5e-32 Score=330.48 Aligned_cols=197 Identities=25% Similarity=0.396 Sum_probs=164.2
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
..|...|++++|.+ .++|+|+||+|++||++||+|+||||||||+++|.| |+| +|.+... +.+
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR 496 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence 36888899999953 469999999999999999999999999999999995 554 5655421 124
Q ss_pred cEEEcccc-cc-ccccHHHHhccCCCCCCHHHHHHHHHHcCch-hhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 823 IGLVQQEP-AL-FAASIFDNIAYGKEGATEAEVVEAARAANVH-GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 823 i~~VpQdp-~l-F~gTIreNL~~~~~~~sd~ei~~al~~a~l~-~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
++|++|++ .+ ...|+++|+.+..... ++++.++++..++. +...+ ++ ..||||||||++|||||+
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~-------~~----~~LSGGqkQRvaLArAL~ 564 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAM-------PI----SALSGGWKMKLALARAVL 564 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHS-------BG----GGCCHHHHHHHHHHHHHH
T ss_pred EEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcC-------Cc----ccCCHHHHHHHHHHHHHh
Confidence 78999986 34 4569999997521112 77888999999884 44332 23 359999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEE-EecChhHHhc
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIV-EQGSHSELVS 970 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~-~D~Iivl~~G~iv-e~Gt~~eLl~ 970 (987)
++|+||||||||++||+.+.+.+.+.|++ .++|+|+|||+++.+.. ||+|++|++|+++ ..|+++++++
T Consensus 565 ~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 565 RNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999999999999999999998 68999999999999875 8999999999997 5799999874
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-36 Score=329.36 Aligned_cols=236 Identities=15% Similarity=0.228 Sum_probs=185.5
Q ss_pred HcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCccEEEEeEEEEC
Q 001980 30 RNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSY 109 (987)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y 109 (987)
..+..+-+.+.+++.+... ..++..+...+..+.++..+.+|+.++++.+++... .. .. .+...+.|+++||+|+|
T Consensus 36 a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~-~~-~~-~~~~~~~i~~~~vs~~y 111 (305)
T 2v9p_A 36 ALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLAT-GE-GS-WKSILTFFNYQNIELIT 111 (305)
T ss_dssp HHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCC-SS-CC-THHHHHHHHHTTCCHHH
T ss_pred HHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CC-Cc-ccccCCeEEEEEEEEEc
Confidence 3344455566665555444 478889999999999999999999999976432211 10 00 01112348899999999
Q ss_pred CCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCch
Q 001980 110 PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA 189 (987)
Q Consensus 110 ~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~ 189 (987)
+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|+|++|+
T Consensus 112 ~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~ 166 (305)
T 2v9p_A 112 F----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWL 166 (305)
T ss_dssp H----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGG
T ss_pred C----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCcccccc
Confidence 6 35899999999999999999999999999999999999 7888 467899999999
Q ss_pred hcHHH-HHhcCCCCCCHHHHHHHHHHHhHHHHHHh-CCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 001980 190 TTILE-NILYGKPEATMAEVEAAASAANAHSFITL-LPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 267 (987)
Q Consensus 190 ~tv~e-ni~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts 267 (987)
+|+++ ||.++. ..+. .++++++. +|+|++ |.+|||||||| ||||+++|+||| ||
T Consensus 167 ~ti~~~ni~~~~-~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts 222 (305)
T 2v9p_A 167 ASLADTRAALVD-DATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TS 222 (305)
T ss_dssp GGGTTCSCEEEE-EECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EE
T ss_pred ccHHHHhhccCc-cccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----EC
Confidence 99998 999863 2222 23456666 888887 77999999999 999999999999 99
Q ss_pred CCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHHH
Q 001980 268 ALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 335 (987)
Q Consensus 268 ~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 335 (987)
+||+.+++.+.. +|||++.+..||+| +|++|++++.|+++++ .+.|.+++.
T Consensus 223 ~LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~~ 273 (305)
T 2v9p_A 223 NIDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLWG 273 (305)
T ss_dssp SSCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHSTT
T ss_pred CCCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHHH
Confidence 999999887752 29999999999999 9999999999999999 566766543
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-30 Score=314.93 Aligned_cols=205 Identities=29% Similarity=0.441 Sum_probs=152.1
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHH---------HHHHcCCCCC------cc------EEEECCEeCCCCC---HH
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVV---------SLIERFYDPN------AG------HVLLDNVDIKTLQ---LR 172 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl---------~~l~g~~~~~------~G------~i~~~g~~~~~~~---~~ 172 (987)
.|+|+||+|++|++++|+|+||||||||+ +.+.|...+. +| .+.++..++.... +.
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 69999999999999999999999999997 3444443332 23 3455555543211 00
Q ss_pred -------HH-------------------------------hcceEEEcCCCCCch-------------------------
Q 001980 173 -------WL-------------------------------RDQIGLVNQEPALFA------------------------- 189 (987)
Q Consensus 173 -------~~-------------------------------~~~i~~v~Q~~~l~~------------------------- 189 (987)
.+ .+..||++|+..+++
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 00 123577777765543
Q ss_pred --------hcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcc-cccCCCCCCChHHHHHHHHHHHhccCC---
Q 001980 190 --------TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYST-QVGERGVQLSGGQKQRIAIARAMLKNP--- 257 (987)
Q Consensus 190 --------~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~~~~g~~LSgGqkqRialARal~~~~--- 257 (987)
.|+.|++.|.... ....+ ..+.+..+ |+.. .+++.+.+|||||||||+|||||+++|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~~---~~~~~------~~~~L~~v--GL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p 827 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKNI---PSIKR------TLQVLHDV--GLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGR 827 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTTC---HHHHH------HHHHHHHT--TGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred CCHHHHhhCCHHHHHHHHhcc---hhHHH------HHHHHHHc--CCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 3566666554321 11111 12234444 5543 468899999999999999999999876
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCEEEEE------eCCEEEEecChHHHHHhhhhH
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVI------QQGQVVETGTHEELIAKAGAY 330 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~~ 330 (987)
+||||||||++||+.+++.+++.|+++. +|+|||+|||+++.+..||+|++| ++|+|+++|+++++.+..+.|
T Consensus 828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~sy 907 (916)
T 3pih_A 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSY 907 (916)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchH
Confidence 7999999999999999999999999885 589999999999999899999999 899999999999998876655
Q ss_pred HH
Q 001980 331 AS 332 (987)
Q Consensus 331 ~~ 332 (987)
..
T Consensus 908 t~ 909 (916)
T 3pih_A 908 TG 909 (916)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-29 Score=293.55 Aligned_cols=201 Identities=18% Similarity=0.246 Sum_probs=151.8
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC--------------------------------------CCCce
Q 001980 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--------------------------------------PTAGK 803 (987)
Q Consensus 762 vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~--------------------------------------p~~G~ 803 (987)
+|+++||++++| +++|+|+||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 699999999999 999999999999999999966553 45788
Q ss_pred EEECCccCCCCCHHHHhcc-cEEEccccccccccHHHHhccCCCCCCH--------------------------------
Q 001980 804 VMIDGKDIRRLNLKSLRLK-IGLVQQEPALFAASIFDNIAYGKEGATE-------------------------------- 850 (987)
Q Consensus 804 I~idG~di~~i~l~~lR~~-i~~VpQdp~lF~gTIreNL~~~~~~~sd-------------------------------- 850 (987)
+++||.+++..++.+++.. +++++|++.++-++..++..+-......
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999987777887777 7999999988766655443321111100
Q ss_pred ----------------------------------HHHHHHHHHcCchh--hHhh-------CCCcCCC---ccCCCCCC-
Q 001980 851 ----------------------------------AEVVEAARAANVHG--FVSA-------LPNAYKT---PVGERGVQ- 883 (987)
Q Consensus 851 ----------------------------------~ei~~al~~a~l~~--~i~~-------lp~gldt---~vge~G~~- 883 (987)
+.+.+.++..++.+ +... -+.|++. .+..++..
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 11111122211111 0000 0112222 23333333
Q ss_pred -------CChhHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEE
Q 001980 884 -------LSGGQKQRIAIARAVLKNP--AILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVV 954 (987)
Q Consensus 884 -------LSgGQrQrlaLARAllr~p--~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl 954 (987)
||||||||++|||+|+++| ++|||||||++||+.+...|.+.|++..+++|||+|||+++.+..||+|+||
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 7999999999999999999 9999999999999999999999999988889999999999998889999999
Q ss_pred ----eCCEEEEec
Q 001980 955 ----QDGRIVEQG 963 (987)
Q Consensus 955 ----~~G~ive~G 963 (987)
++|+++...
T Consensus 369 ~k~~~~G~~~~~~ 381 (415)
T 4aby_A 369 EKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEeccCCceEEEE
Confidence 999987653
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-29 Score=302.43 Aligned_cols=214 Identities=24% Similarity=0.351 Sum_probs=160.4
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-cCC-------CCCcc------------
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIE-RFY-------DPNAG------------ 157 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~-g~~-------~~~~G------------ 157 (987)
..++++|++. ..|+|+||+|++|++++|+|+||||||||++.|+ |.+ .+..|
T Consensus 628 ~~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 699 (972)
T 2r6f_A 628 RWLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLD 699 (972)
T ss_dssp CEEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCS
T ss_pred eEEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccc
Confidence 3588888852 2689999999999999999999999999999864 211 12233
Q ss_pred -EEEECCEeCCCC---CHH-------HH---------hcceEEEcCCCCCc-----------------------------
Q 001980 158 -HVLLDNVDIKTL---QLR-------WL---------RDQIGLVNQEPALF----------------------------- 188 (987)
Q Consensus 158 -~i~~~g~~~~~~---~~~-------~~---------~~~i~~v~Q~~~l~----------------------------- 188 (987)
.|.+++.++... ++. .+ .+.+||++|.+.+-
T Consensus 700 ~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~c 779 (972)
T 2r6f_A 700 KVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPC 779 (972)
T ss_dssp EEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEEC
T ss_pred eEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccc
Confidence 478888887432 111 11 12468888853210
Q ss_pred --------------------------hhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcc-cccCCCCCCCh
Q 001980 189 --------------------------ATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYST-QVGERGVQLSG 241 (987)
Q Consensus 189 --------------------------~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~~~~g~~LSg 241 (987)
..|+.||+.|.... ....+ ..+.++.+ |+.. ..+....+|||
T Consensus 780 e~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~---~~~~~------~~~~L~~~--gL~~~~l~~~~~~LSG 848 (972)
T 2r6f_A 780 EVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI---PKIKR------KLETLYDV--GLGYMKLGQPATTLSG 848 (972)
T ss_dssp TTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC---HHHHH------HHHHHHHT--TCSSSBTTCCGGGCCH
T ss_pred cccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc---hhHHH------HHHHHHHc--CCCcccccCchhhCCH
Confidence 12556666553211 11111 12345555 6665 67888899999
Q ss_pred HHHHHHHHHHHhccCC---CEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCEEEEE------eC
Q 001980 242 GQKQRIAIARAMLKNP---KILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVI------QQ 311 (987)
Q Consensus 242 GqkqRialARal~~~~---~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~~l------~~ 311 (987)
||||||+|||||+++| ++|||||||++||+.+.+.+.+.|.++. .|+|||+|||+++.+..||+|++| ++
T Consensus 849 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~ 928 (972)
T 2r6f_A 849 GEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRG 928 (972)
T ss_dssp HHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSC
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCC
Confidence 9999999999999875 9999999999999999999999999885 589999999999998889999999 68
Q ss_pred CEEEEecChHHHHHhhhhH
Q 001980 312 GQVVETGTHEELIAKAGAY 330 (987)
Q Consensus 312 G~i~~~g~~~~l~~~~~~~ 330 (987)
|+|+..|+++++.+....|
T Consensus 929 G~Iv~~g~~~el~~~~~~~ 947 (972)
T 2r6f_A 929 GQIVAVGTPEEVAEVKESH 947 (972)
T ss_dssp CSEEEEESHHHHHTCTTCH
T ss_pred CEEEEecCHHHHHhCchhH
Confidence 9999999999998754444
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-29 Score=303.84 Aligned_cols=214 Identities=27% Similarity=0.381 Sum_probs=156.9
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHH-HHcCC-------CC---------------
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSL-IERFY-------DP--------------- 154 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~-l~g~~-------~~--------------- 154 (987)
..++++|+++. .|+|+||+|++|++++|+|+||||||||++. |.|.+ +|
T Consensus 501 ~~L~v~~l~~~--------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTRN--------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEET--------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeeec--------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 45999999861 5999999999999999999999999999996 66543 23
Q ss_pred ---Ccc-------EEEECCEeCCCCCH----------HHHhc---------ceEEEcCCC--------------------
Q 001980 155 ---NAG-------HVLLDNVDIKTLQL----------RWLRD---------QIGLVNQEP-------------------- 185 (987)
Q Consensus 155 ---~~G-------~i~~~g~~~~~~~~----------~~~~~---------~i~~v~Q~~-------------------- 185 (987)
.+| .|.+++.++...+. +.+|. ..+|.++..
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 456 67889888754321 12222 122322210
Q ss_pred --CC------------------------ch-hcHHHHHhcCCC-----CCCHHHHHHHHHHHhHHHHHHhCCCCCcc-cc
Q 001980 186 --AL------------------------FA-TTILENILYGKP-----EATMAEVEAAASAANAHSFITLLPNGYST-QV 232 (987)
Q Consensus 186 --~l------------------------~~-~tv~eni~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~ 232 (987)
.+ +. .||.||+.+... ....... ....+.++.+ |+.. .+
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~------~~~~~~L~~~--gL~~~~l 724 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAI------FRALDTLREV--GLGYLRL 724 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHH------HHHHHHHHHT--TCTTSBT
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHH------HHHHHHHHHc--CCCcccc
Confidence 00 11 255555543210 0000111 1123445555 6655 46
Q ss_pred cCCCCCCChHHHHHHHHHHHhccC---CCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCEEEE
Q 001980 233 GERGVQLSGGQKQRIAIARAMLKN---PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAV 308 (987)
Q Consensus 233 ~~~g~~LSgGqkqRialARal~~~---~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~~ 308 (987)
+....+|||||||||+|||+|+++ |+||||||||++||+...+.+.+.|+++. .|+|||+|||+++++..||+|++
T Consensus 725 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~ 804 (842)
T 2vf7_A 725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLD 804 (842)
T ss_dssp TCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEE
Confidence 888899999999999999999996 79999999999999999999999999885 58999999999999977999999
Q ss_pred E------eCCEEEEecChHHHHHhh
Q 001980 309 I------QQGQVVETGTHEELIAKA 327 (987)
Q Consensus 309 l------~~G~i~~~g~~~~l~~~~ 327 (987)
| ++|+|+..|+++++.+..
T Consensus 805 L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 805 IGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp ECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred ECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 9 699999999999987654
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-32 Score=317.89 Aligned_cols=192 Identities=14% Similarity=0.053 Sum_probs=155.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCc-e-EEECCccCCCCCHHHHh
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG-K-VMIDGKDIRRLNLKSLR 820 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G-~-I~idG~di~~i~l~~lR 820 (987)
+.++++||+++|+ ++||+|++|++++|+||||||||||+++|.|++.|++| + |++|| +.|
T Consensus 117 ~mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg---------~~~ 178 (460)
T 2npi_A 117 TMKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL---------DPQ 178 (460)
T ss_dssp THHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC---------CTT
T ss_pred chhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC---------Ccc
Confidence 3578888988882 79999999999999999999999999999999999999 9 99998 137
Q ss_pred cccEEEcccccccc----ccHHHHhccCCCC---C-CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 821 LKIGLVQQEPALFA----ASIFDNIAYGKEG---A-TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 821 ~~i~~VpQdp~lF~----gTIreNL~~~~~~---~-sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
+.++++||++.+|. .|+++|+ ++... . .++.+.++++.. |++.... ..+||||||||+
T Consensus 179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrl 244 (460)
T 2npi_A 179 QPIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQL 244 (460)
T ss_dssp SCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHH
T ss_pred CCeeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHH
Confidence 88999999996553 4899999 65321 1 111111222222 3443332 568999999999
Q ss_pred HHHHH--HccCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCch------hh-hccCE-----EEE
Q 001980 893 AIARA--VLKNPAI----LLLDE-ATSALDAESECVLQEALERLMRGRTTVLVAHRLS------TI-RGVDC-----IGV 953 (987)
Q Consensus 893 aLARA--llr~p~I----LlLDE-aTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~------ti-~~~D~-----Iiv 953 (987)
+|||| |+++|++ ||||| ||++||+. ...+.+.+++. +.|+|+|+|+.+ .+ ..||+ |++
T Consensus 245 alAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~ 321 (460)
T 2npi_A 245 GQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFF 321 (460)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEE
T ss_pred HHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEE
Confidence 99999 9999999 99999 99999999 77777777664 789999999987 44 34799 999
Q ss_pred Ee-CCEEEEecChhHHhc
Q 001980 954 VQ-DGRIVEQGSHSELVS 970 (987)
Q Consensus 954 l~-~G~ive~Gt~~eLl~ 970 (987)
|+ +|+|+ .|+++++.+
T Consensus 322 l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 322 IPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp ECCCTTCC-CCCHHHHHH
T ss_pred EeCCCcEE-ECCHHHHhh
Confidence 99 99999 999998853
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-28 Score=282.42 Aligned_cols=200 Identities=20% Similarity=0.250 Sum_probs=148.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC--------------------------------------CCccE
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--------------------------------------PNAGH 158 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--------------------------------------~~~G~ 158 (987)
++++++|++.+| +++|+||||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 789999999999 999999999999999999977664 45789
Q ss_pred EEECCEeCCCCCHHHHhcc-eEEEcCCCCCchhcHHHHHhcCCCCCC---------HHHHHHHHH---------------
Q 001980 159 VLLDNVDIKTLQLRWLRDQ-IGLVNQEPALFATTILENILYGKPEAT---------MAEVEAAAS--------------- 213 (987)
Q Consensus 159 i~~~g~~~~~~~~~~~~~~-i~~v~Q~~~l~~~tv~eni~~~~~~~~---------~~~~~~~~~--------------- 213 (987)
+.+||.+++..+...+... +++++|++.++..+..++..|-..... +..+.++.+
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999876666666665 899999987765544443332111110 000000000
Q ss_pred ---------------------------------HHhHHHHHHhC--CC----------------CCcc---cccCCCCC-
Q 001980 214 ---------------------------------AANAHSFITLL--PN----------------GYST---QVGERGVQ- 238 (987)
Q Consensus 214 ---------------------------------~~~~~~~~~~~--~~----------------g~~t---~~~~~g~~- 238 (987)
...+.+.+..+ |. |.+. .+..++..
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 00111122222 11 1111 23333333
Q ss_pred -------CChHHHHHHHHHHHhccCC--CEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEE
Q 001980 239 -------LSGGQKQRIAIARAMLKNP--KILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVI 309 (987)
Q Consensus 239 -------LSgGqkqRialARal~~~~--~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l 309 (987)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|+++.+|+|||+|||+++.+..||++++|
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 8999999999999999999 9999999999999999999999999987789999999999988889999999
Q ss_pred ----eCCEEEEe
Q 001980 310 ----QQGQVVET 317 (987)
Q Consensus 310 ----~~G~i~~~ 317 (987)
++|+++..
T Consensus 369 ~k~~~~G~~~~~ 380 (415)
T 4aby_A 369 EKQVEDGRTVSH 380 (415)
T ss_dssp EEEEETTEEEEE
T ss_pred EEeccCCceEEE
Confidence 99998754
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-30 Score=299.12 Aligned_cols=184 Identities=13% Similarity=0.120 Sum_probs=144.9
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-E-EEECCEeCCCCCHHHHhcceEEEcCCCCCch----hcH
Q 001980 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG-H-VLLDNVDIKTLQLRWLRDQIGLVNQEPALFA----TTI 192 (987)
Q Consensus 119 ~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G-~-i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~----~tv 192 (987)
.++||++++|++++|+||||||||||+|+|+|+++|++| + |.+||. .++.++|+||++.+|. .|+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccCCeeeeccchhhcccccccch
Confidence 368999999999999999999999999999999999999 9 999981 2568999999985432 489
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH--hccCCCE----EEEeC-C
Q 001980 193 LENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA--MLKNPKI----LLLDE-A 265 (987)
Q Consensus 193 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa--l~~~~~i----lllDE-p 265 (987)
+||+ |+......... .....+.+..+ |+..... +.+||||||||++|||| |+.+|++ +|||| |
T Consensus 200 ~eni-~~~~~~~~~~~-----~~~~~~ll~~~--gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP 269 (460)
T 2npi_A 200 QLPT-WGQSLTSGATL-----LHNKQPMVKNF--GLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS 269 (460)
T ss_dssp TCTT-CSCBCBSSCCS-----SCCBCCEECCC--CSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC
T ss_pred hhhh-cccccccCcch-----HHHHHHHHHHh--CCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc
Confidence 9999 75421000000 00001112222 5555443 67899999999999999 9999999 99999 9
Q ss_pred CCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCC------ccc-cCCE-----EEEEe-CCEEEEecChHHHHH
Q 001980 266 TSALDAGSESIVQEALDRLMVGRTTVVVAHRLS------TIR-NVDT-----VAVIQ-QGQVVETGTHEELIA 325 (987)
Q Consensus 266 ts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~------~~~-~~d~-----i~~l~-~G~i~~~g~~~~l~~ 325 (987)
|++||+. .+.+.+.++++ ++|+|+|||+.+ ++. .||+ |++|+ +|+++ .|+++++.+
T Consensus 270 ts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 270 ISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp GGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHH
T ss_pred ccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhh
Confidence 9999999 66777776664 789999999988 544 4899 99999 99999 999988743
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-26 Score=256.24 Aligned_cols=203 Identities=18% Similarity=0.230 Sum_probs=144.5
Q ss_pred eeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcc-----------------------------------------------
Q 001980 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERF----------------------------------------------- 796 (987)
Q Consensus 764 ~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl----------------------------------------------- 796 (987)
+++++++.+| .++|+|+||||||||+.+|..+
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 4678899999 9999999999999999999843
Q ss_pred ---CCCCCceEEECCccCCCCCHHHHhcccEEEccccccc-cccHHHHhccCCCCC----------------CHHHHHHH
Q 001980 797 ---YDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALF-AASIFDNIAYGKEGA----------------TEAEVVEA 856 (987)
Q Consensus 797 ---~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF-~gTIreNL~~~~~~~----------------sd~ei~~a 856 (987)
+.+.+|.+++||.+++.-++..++..+++.||+..++ .|++.+|+... |.. +-+++.+.
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ld~~~~~~~~~~~y~rv~e~ 173 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLESSKHPTSLVPRGSYQRVNES 173 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC----------------------CHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2344578999999886556667777899999998765 89999998642 210 00112221
Q ss_pred HHHc------------Cch-hhHhhCCCcCCCccC------CCCCCCChhHHHHHHHHHHHc----cCCCEEEEeCCCCC
Q 001980 857 ARAA------------NVH-GFVSALPNAYKTPVG------ERGVQLSGGQKQRIAIARAVL----KNPAILLLDEATSA 913 (987)
Q Consensus 857 l~~a------------~l~-~~i~~lp~gldt~vg------e~G~~LSgGQrQrlaLARAll----r~p~ILlLDEaTS~ 913 (987)
+... .+. .....++.|+++.++ .....||+|||||++|||||+ ++|++|||||||++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~ 253 (322)
T 1e69_A 174 FNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSP 253 (322)
T ss_dssp HHHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSS
T ss_pred HHHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC
Confidence 1110 000 001224446655432 234589999999999999996 78999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEE--EEEeCCEE-EEecChhHH
Q 001980 914 LDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCI--GVVQDGRI-VEQGSHSEL 968 (987)
Q Consensus 914 LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~I--ivl~~G~i-ve~Gt~~eL 968 (987)
||+.+...+.+.|++..+++|+|+|||+.+.+..||++ ++|++|+. +...+.++.
T Consensus 254 LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 254 LDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp CCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC---
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcchh
Confidence 99999999999999987788999999999888889987 88888864 444444443
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-26 Score=255.05 Aligned_cols=195 Identities=20% Similarity=0.248 Sum_probs=140.8
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC----------------------------------------------
Q 001980 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY---------------------------------------------- 152 (987)
Q Consensus 119 ~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~---------------------------------------------- 152 (987)
+++++++.+| +++|+||||||||||+++|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578888999 99999999999999999998543
Q ss_pred ----CCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCc-hhcHHHHHhcCCCC---------------CCHHHHHHHH
Q 001980 153 ----DPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALF-ATTILENILYGKPE---------------ATMAEVEAAA 212 (987)
Q Consensus 153 ----~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~-~~tv~eni~~~~~~---------------~~~~~~~~~~ 212 (987)
.+.+|.+.+||.+++..+...+...+++.+|+..++ .+++.+|+.....+ ..++++.+..
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 334578899999875555566666789999988766 78999998753211 0112222221
Q ss_pred HHHh------------H-HHHHHhCCCCCcccc------cCCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCC
Q 001980 213 SAAN------------A-HSFITLLPNGYSTQV------GERGVQLSGGQKQRIAIARAML----KNPKILLLDEATSAL 269 (987)
Q Consensus 213 ~~~~------------~-~~~~~~~~~g~~t~~------~~~g~~LSgGqkqRialARal~----~~~~illlDEpts~L 269 (987)
...- + ......++.|+++.+ ...+..||||||||++|||||+ .+|+++||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 1100 0 000123444555432 2345789999999999999996 689999999999999
Q ss_pred ChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEE--EEEeCCEE
Q 001980 270 DAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTV--AVIQQGQV 314 (987)
Q Consensus 270 D~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i--~~l~~G~i 314 (987)
|+...+.+.+.+.++.+++|+|++||+.+.+..||++ ++|++|+.
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence 9999999999999886688999999998877789987 78888854
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-28 Score=250.87 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=102.1
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHH
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDN 840 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreN 840 (987)
++|+|+ ++||++||+||||||||||+++|.|+ +|++|+|. +.++.. +...+|++++|+||++ ++|
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HHH
Confidence 589996 89999999999999999999999999 99999994 333331 2234688999999998 566
Q ss_pred h-ccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 001980 841 I-AYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 919 (987)
Q Consensus 841 L-~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te 919 (987)
+ .++.+. .+.+........+.+.++. | | |||||++|||||+.+|++||||||||+ +.
T Consensus 79 l~~~~~~~--~~~~~~~~~~~~~~~~l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~ 136 (208)
T 3b85_A 79 IDPYLRPL--HDALRDMVEPEVIPKLMEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TP 136 (208)
T ss_dssp -CTTTHHH--HHHHTTTSCTTHHHHHHHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CH
T ss_pred HHHHHHHH--HHHHHHhccHHHHHHHHHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cH
Confidence 6 332100 0000000000011112211 1 2 999999999999999999999999999 88
Q ss_pred HHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEE
Q 001980 920 CVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRI 959 (987)
Q Consensus 920 ~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~i 959 (987)
..+.+.|++..+++|+| |||+++.+. ++...++|..
T Consensus 137 ~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 137 AQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGLR 172 (208)
T ss_dssp HHHHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred HHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcHH
Confidence 89999998874578999 999998654 3445666653
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-27 Score=247.58 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=100.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHH
Q 001980 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILEN 195 (987)
Q Consensus 116 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 195 (987)
.+|+|+ ++|++++|+||||||||||+++|+|+ +|++|+|.. .++. .+...++++|+|+||++ +||
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~-~~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILT-RPAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEE-ECSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEec-CCchhhhcceEEecCCH-------HHH
Confidence 478885 89999999999999999999999999 999999943 2332 11223467899999997 566
Q ss_pred H-hcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHH
Q 001980 196 I-LYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274 (987)
Q Consensus 196 i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~ 274 (987)
+ .++.+. ...+........+.+.++. | | |||||++|||||+.+|++|||||||++ ++
T Consensus 79 l~~~~~~~--~~~~~~~~~~~~~~~~l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~ 136 (208)
T 3b85_A 79 IDPYLRPL--HDALRDMVEPEVIPKLMEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TP 136 (208)
T ss_dssp -CTTTHHH--HHHHTTTSCTTHHHHHHHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CH
T ss_pred HHHHHHHH--HHHHHHhccHHHHHHHHHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc----cH
Confidence 6 332100 0000000000111222221 1 1 999999999999999999999999999 88
Q ss_pred HHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCC
Q 001980 275 SIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQG 312 (987)
Q Consensus 275 ~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G 312 (987)
+.+.+.|.++.+|+|+| +||+++.+.. +...++|
T Consensus 137 ~~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G 170 (208)
T 3b85_A 137 AQMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSG 170 (208)
T ss_dssp HHHHHHHTTBCTTCEEE-EEEC---------------C
T ss_pred HHHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCc
Confidence 89999998874588999 9999876543 3344555
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-28 Score=254.91 Aligned_cols=166 Identities=14% Similarity=0.139 Sum_probs=123.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH-HHHhcccEEEcccccccc-----
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL-KSLRLKIGLVQQEPALFA----- 834 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l-~~lR~~i~~VpQdp~lF~----- 834 (987)
..|+||||+|++|+.+||+||||||||||+++|.|++ | |+|.+ |+++.+.+. ...|..++|++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3699999999999999999999999999999999999 6 99999 888765432 335788999999986663
Q ss_pred ------ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH-----HHHHccCCC
Q 001980 835 ------ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI-----ARAVLKNPA 903 (987)
Q Consensus 835 ------gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL-----ARAllr~p~ 903 (987)
+++++| .++. +++++.++++..... .+. .+||||||||++| ||+++++|+
T Consensus 87 ~~~l~~~~~~~~-~~g~---~~~~i~~~l~~~~~~------------il~---~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT---LKSEYDKAKEQNKIC------------LFE---MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp TCEEEEEEETTE-EEEE---EHHHHHHHHHTTCEE------------EEE---ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred cchhhhhhcccc-cCCC---cHHHHHHHHhCCCcE------------EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 444555 2332 345666666553321 111 4699999999999 999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeC
Q 001980 904 ILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 956 (987)
Q Consensus 904 ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~ 956 (987)
+++|||||+++|.+++..|++.+.+..+++| ++| +..+|+|+|+++
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 9999999999999999999999988776777 678 577899888765
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-25 Score=226.02 Aligned_cols=149 Identities=18% Similarity=0.223 Sum_probs=108.1
Q ss_pred eeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccc--cccccHHHHhc
Q 001980 765 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPA--LFAASIFDNIA 842 (987)
Q Consensus 765 ~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~--lF~gTIreNL~ 842 (987)
||||+|++||.++|+|+||||||||++++++ |... ++.+.+| ++++|++. .+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEV--------ISSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGE--------EEHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeE--------EccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 2111 2334454 67788862 44454444442
Q ss_pred cCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH---
Q 001980 843 YGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE--- 919 (987)
Q Consensus 843 ~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te--- 919 (987)
. ...... ..|+...+.. -...|+|||||++||||+..+|++|+|||||++||+.++
T Consensus 64 ~---------~~~~~~-----------~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 Y---------IVSKRL-----------QLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp H---------HHHHHH-----------HTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred H---------HHHHHH-----------hCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 111111 1233333322 234699999999999999999999999999999999944
Q ss_pred -------------HHHHHHHHHHc-CCCeEEEEecCchhhhccCEE
Q 001980 920 -------------CVLQEALERLM-RGRTTVLVAHRLSTIRGVDCI 951 (987)
Q Consensus 920 -------------~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~I 951 (987)
+.+++.|++.. +|.|+|+|+|+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 77777766543 489999999999999887765
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-24 Score=240.60 Aligned_cols=82 Identities=24% Similarity=0.329 Sum_probs=75.6
Q ss_pred CCCCCChhHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEE
Q 001980 880 RGVQLSGGQKQRIAIARAVL------KNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIG 952 (987)
Q Consensus 880 ~G~~LSgGQrQrlaLARAll------r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~Ii 952 (987)
....||||||||++|||||+ ++|++|||||||++||+.+...+.+.|++.. .|+|||+|+|+++.+..||+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~ 355 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKL 355 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEE
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE
Confidence 34579999999999999999 7999999999999999999999999999875 5799999999999988899999
Q ss_pred EEeCCEEEE
Q 001980 953 VVQDGRIVE 961 (987)
Q Consensus 953 vl~~G~ive 961 (987)
+|++|+|++
T Consensus 356 ~l~~G~i~~ 364 (365)
T 3qf7_A 356 RITGGVVVN 364 (365)
T ss_dssp EEETTEEC-
T ss_pred EEECCEEEe
Confidence 999999976
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-24 Score=240.81 Aligned_cols=84 Identities=26% Similarity=0.355 Sum_probs=77.1
Q ss_pred cCCCCCCChHHHHHHHHHHHhc------cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCE
Q 001980 233 GERGVQLSGGQKQRIAIARAML------KNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDT 305 (987)
Q Consensus 233 ~~~g~~LSgGqkqRialARal~------~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~ 305 (987)
+....+||||||||++|||||+ .+|++|||||||++||+.+.+.+.+.|.++. .|+|||+|||+++....||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 3466789999999999999999 7999999999999999999999999999885 48999999999998778999
Q ss_pred EEEEeCCEEEE
Q 001980 306 VAVIQQGQVVE 316 (987)
Q Consensus 306 i~~l~~G~i~~ 316 (987)
|++|++|++++
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999875
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-26 Score=253.77 Aligned_cols=141 Identities=17% Similarity=0.189 Sum_probs=118.0
Q ss_pred EEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEE
Q 001980 747 LRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 826 (987)
Q Consensus 747 f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~V 826 (987)
|++++| | .++++++||.|++|+.++|+|+||||||||+++|.|+++|++|.|.++|.+ ++.+..+|+.++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEE
Confidence 666666 6 248999999999999999999999999999999999999999999999976 33333345555554
Q ss_pred ccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 001980 827 QQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILL 906 (987)
Q Consensus 827 pQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILl 906 (987)
+| |||+||++|||||.++|++||
T Consensus 223 ~g---------------------------------------------------------gg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 223 FG---------------------------------------------------------GNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp CB---------------------------------------------------------TTBCHHHHHHHHTTSCCSEEE
T ss_pred eC---------------------------------------------------------CChhHHHHHHHHhhhCCCEEE
Confidence 30 799999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcCCC-eEEEEecCchhhhccCEEEEEeCCEE
Q 001980 907 LDEATSALDAESECVLQEALERLMRGR-TTVLVAHRLSTIRGVDCIGVVQDGRI 959 (987)
Q Consensus 907 LDEaTS~LD~~te~~I~~~l~~~~~~~-TvI~IaHRl~ti~~~D~Iivl~~G~i 959 (987)
|||||+. .+++.|+....++ |+|+++|+++....+|||++|++|+.
T Consensus 246 ldE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 246 LGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp ECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred EcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 9999982 2456676666665 79999999998888999999998853
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-25 Score=222.15 Aligned_cols=149 Identities=17% Similarity=0.223 Sum_probs=107.7
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCC--CchhcHHHHHh
Q 001980 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPA--LFATTILENIL 197 (987)
Q Consensus 120 ~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~--l~~~tv~eni~ 197 (987)
|+||++++||+++|+||||||||||++++.+ |...++ .+.++ ++++|++. .+.+++.+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~--------~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVIS--------SDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEE--------HHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEc--------cHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 222222 12222 67788763 23334433322
Q ss_pred cCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChH-----
Q 001980 198 YGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG----- 272 (987)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~----- 272 (987)
. .. .. .+..|+.+.+... ...|||||||++||||+..+|++++|||||++||+.
T Consensus 64 ~------------~~-----~~---~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 Y------------IV-----SK---RLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp H------------HH-----HH---HHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred H------------HH-----HH---HHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 00 01 1122555555443 356999999999999999999999999999999999
Q ss_pred -----------HHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCEE
Q 001980 273 -----------SESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTV 306 (987)
Q Consensus 273 -----------~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i 306 (987)
..+.+.+.++++. +|.|+|++||+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 4577888877664 489999999999988776654
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.89 E-value=7.4e-25 Score=221.31 Aligned_cols=147 Identities=14% Similarity=0.166 Sum_probs=106.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHH
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVE 209 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 209 (987)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ +..+|+. +..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~-------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSK-------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EET--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhh--------
Confidence 689999999999999999999985 556665543322113466899999986 2223331 100
Q ss_pred HHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH-----hccCCCEEEEeC--CCCCCChHHHHHHHHHHH
Q 001980 210 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA-----MLKNPKILLLDE--ATSALDAGSESIVQEALD 282 (987)
Q Consensus 210 ~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa-----l~~~~~illlDE--pts~LD~~~~~~i~~~l~ 282 (987)
.++ .+..+++.+.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.+.
T Consensus 63 -------------~~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 63 -------------FFT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp -------------TCC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred -------------cCC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 000 1135677788999999999999996 999999999999 999999999999999887
Q ss_pred hhhCCCeEEEEcC---CCCcccc-CCEEEEEeCCEEEE
Q 001980 283 RLMVGRTTVVVAH---RLSTIRN-VDTVAVIQQGQVVE 316 (987)
Q Consensus 283 ~~~~~~tvi~vtH---~~~~~~~-~d~i~~l~~G~i~~ 316 (987)
+ .+.|+|++|| +.+++.. +|+ .+|++++
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 6 3677999996 6666655 566 4566654
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-25 Score=222.42 Aligned_cols=148 Identities=13% Similarity=0.127 Sum_probs=109.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHH
Q 001980 775 SQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVV 854 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~ 854 (987)
+++|+||||||||||+++|.|++. |.++|.+..+......++++++++|++ +..+|+. +.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~-------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSK-------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EET--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhh--------
Confidence 689999999999999999999985 667887765443224678999999997 3334431 100
Q ss_pred HHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q 001980 855 EAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA-----VLKNPAILLLDE--ATSALDAESECVLQEALE 927 (987)
Q Consensus 855 ~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA-----llr~p~ILlLDE--aTS~LD~~te~~I~~~l~ 927 (987)
+ .+ -+..++..+.+||||||||++|||| ++.+|++||||| ||+++|+.+.+.+.+.++
T Consensus 63 ------~-------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 63 ------F-------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp ------T-------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred ------c-------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 0 00 0123556667899999999999996 999999999999 999999999999999997
Q ss_pred HHcCCCeEEEEec---Cchhhhc-cCEEEEEeCCEEEEe
Q 001980 928 RLMRGRTTVLVAH---RLSTIRG-VDCIGVVQDGRIVEQ 962 (987)
Q Consensus 928 ~~~~~~TvI~IaH---Rl~ti~~-~D~Iivl~~G~ive~ 962 (987)
+ .+.|+|+++| +.+.+.. +|+ .+|+|++.
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~~ 160 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIEL 160 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEEC
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEEe
Confidence 6 4677999986 6666654 566 56777763
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-25 Score=255.41 Aligned_cols=196 Identities=18% Similarity=0.198 Sum_probs=158.6
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCc---cCCCCC----
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK---DIRRLN---- 815 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~---di~~i~---- 815 (987)
+.++++|+++.|.. +.++|+++ |+|.+||++||+|+||||||||+++|.|+++|+.|.|.++|. ++.++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 35889999999953 34699999 999999999999999999999999999999999999999998 565432
Q ss_pred -HHHHhcccEEEccc--cccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 816 -LKSLRLKIGLVQQE--PALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 816 -l~~lR~~i~~VpQd--p~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
...+++.+++++|+ +....-|+.+|+.+. .+.... +...+..++ +...+||+|| ||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~------ae~~~~-~~~~v~~~l------------d~l~~lS~g~-qrv 266 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRI------AEDFRD-RGQHVLLIM------------DSLTRYAMAQ-REI 266 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHH------HHHHHT-TTCEEEEEE------------ECHHHHHHHH-HHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHH------HHHHHh-CCCCHHHHH------------HhHHHHHHHH-HHH
Confidence 45688999999995 344567899998642 122211 111111221 2245799999 999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-----CC-----eEEEEecCchhhhccCEEEEEeCCEEEEe
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-----GR-----TTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 962 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~-----~~-----TvI~IaHRl~ti~~~D~Iivl~~G~ive~ 962 (987)
+|| +++|++ |+++|+.+...+++.+++..+ |+ ||+++||+++ ...||++++|.+|+|++.
T Consensus 267 slA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~ 336 (438)
T 2dpy_A 267 ALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLS 336 (438)
T ss_dssp HHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEEC
T ss_pred HHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEe
Confidence 999 999998 999999999999999988754 54 9999999999 677899999999999999
Q ss_pred cChhHHhcC
Q 001980 963 GSHSELVSR 971 (987)
Q Consensus 963 Gt~~eLl~~ 971 (987)
|++.++...
T Consensus 337 ~~~~~~~~~ 345 (438)
T 2dpy_A 337 RRLAEAGHY 345 (438)
T ss_dssp HHHHHTTCS
T ss_pred CCHHHccCC
Confidence 999988653
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.1e-26 Score=237.00 Aligned_cols=166 Identities=13% Similarity=0.152 Sum_probs=116.9
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcceEEEcCCCCCchhcH--H
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL-RWLRDQIGLVNQEPALFATTI--L 193 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~v~Q~~~l~~~tv--~ 193 (987)
.|+|+||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++...++ ...++.++|++|++.+|+.-+ .
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 589999999999999999999999999999999999 6 99999 877654332 234568999999987775421 1
Q ss_pred HHHh--------cCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHH-----HHHhccCCCEE
Q 001980 194 ENIL--------YGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI-----ARAMLKNPKIL 260 (987)
Q Consensus 194 eni~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRial-----ARal~~~~~il 260 (987)
+++. +|.+ ..++.+++ +. +....++ .+||||||||++| ||+++.+|+++
T Consensus 88 ~~l~~~~~~~~~~g~~---~~~i~~~l---------~~---~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 88 DFLEYDNYANNFYGTL---KSEYDKAK---------EQ---NKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp CEEEEEEETTEEEEEE---HHHHHHHH---------HT---TCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred chhhhhhcccccCCCc---HHHHHHHH---------hC---CCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 2221 2211 22222222 21 2222232 5799999999999 89999999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeC
Q 001980 261 LLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQ 311 (987)
Q Consensus 261 llDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~ 311 (987)
+|||||+++|..++..+.+.+.+..+++| ++| +..+|.|+++++
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 99999999999999999999988766666 678 567899988764
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-24 Score=246.32 Aligned_cols=167 Identities=17% Similarity=0.169 Sum_probs=134.1
Q ss_pred cceeeeeEEEeCCc--------------------EEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHh
Q 001980 761 VVFKDFNLRIRAGQ--------------------SQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLR 820 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge--------------------~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR 820 (987)
.+|++|||+|++|+ .+||+||||||||||+++|.|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999998764 2
Q ss_pred cccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh--HHHHHHHHHHH
Q 001980 821 LKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG--QKQRIAIARAV 898 (987)
Q Consensus 821 ~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG--QrQrlaLARAl 898 (987)
.++++|++....-|++||+.++.+ ++.+.+.++..++.+. +..+ .||+| ||||++|||||
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~---~~~~~~~L~~~~L~~~--------~~~~-----~lS~G~~~kqrv~la~aL 171 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST---NFPPDTYLEKMKFYEY--------DFFI-----IISATRFKKNDIDIAKAI 171 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS---SCCHHHHHHHTTGGGC--------SEEE-----EEESSCCCHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccch---HHHHHHHHHHcCCCcc--------CCeE-----EeCCCCccHHHHHHHHHH
Confidence 278999986557799999876643 2346667777776542 2112 28999 99999999999
Q ss_pred cc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc------C----CCeEEEEecCchh--hhc-cCEEE
Q 001980 899 LK----------NPAILLLDEATSALDAESECVLQEALERLM------R----GRTTVLVAHRLST--IRG-VDCIG 952 (987)
Q Consensus 899 lr----------~p~ILlLDEaTS~LD~~te~~I~~~l~~~~------~----~~TvI~IaHRl~t--i~~-~D~Ii 952 (987)
.+ +|++++|||||++||+.+...+.+.|++.. . ..++++-||.++. +.. +|+|.
T Consensus 172 ~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 172 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99 999999999999999999999999888763 1 2567778998875 544 56663
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-24 Score=244.90 Aligned_cols=166 Identities=16% Similarity=0.176 Sum_probs=127.2
Q ss_pred cceeeeeEEEeCCc--------------------EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHh
Q 001980 116 IIFRDFSIFFPAGK--------------------TVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR 175 (987)
Q Consensus 116 ~~l~~i~l~i~~G~--------------------~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~ 175 (987)
.+|+++||++++|+ +++|+||||||||||+|+|+|+++|++|+|.++|.+..
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------- 108 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------- 108 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC------------
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc--------
Confidence 48999999999999 99999999999999999999999999999999997653
Q ss_pred cceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChH--HHHHHHHHHHh
Q 001980 176 DQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG--QKQRIAIARAM 253 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgG--qkqRialARal 253 (987)
+.+|++|++...+.|+.||+.++.+.. ++.+.++..++. ..+..+ . |||| ||||++|||||
T Consensus 109 -~~~~v~q~~~~~~ltv~D~~g~~~~~~---~~~~~L~~~~L~--------~~~~~~----~-lS~G~~~kqrv~la~aL 171 (413)
T 1tq4_A 109 -MERHPYKHPNIPNVVFWDLPGIGSTNF---PPDTYLEKMKFY--------EYDFFI----I-ISATRFKKNDIDIAKAI 171 (413)
T ss_dssp -CCCEEEECSSCTTEEEEECCCGGGSSC---CHHHHHHHTTGG--------GCSEEE----E-EESSCCCHHHHHHHHHH
T ss_pred -eeEEeccccccCCeeehHhhcccchHH---HHHHHHHHcCCC--------ccCCeE----E-eCCCCccHHHHHHHHHH
Confidence 128899997544569999987764322 233333333211 111111 2 9999 99999999999
Q ss_pred cc----------CCCEEEEeCCCCCCChHHHHHHHHHHHhhh------C----CCeEEEEcCCCCc--ccc-CCEE
Q 001980 254 LK----------NPKILLLDEATSALDAGSESIVQEALDRLM------V----GRTTVVVAHRLST--IRN-VDTV 306 (987)
Q Consensus 254 ~~----------~~~illlDEpts~LD~~~~~~i~~~l~~~~------~----~~tvi~vtH~~~~--~~~-~d~i 306 (987)
.+ +|++++|||||++||+.+++.+.+.++++. . ..++++.||.++. ++. +|+|
T Consensus 172 ~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 172 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 99 999999999999999999999988887762 1 2567788998876 443 4554
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.5e-24 Score=243.22 Aligned_cols=192 Identities=15% Similarity=0.136 Sum_probs=153.1
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE---eCCCC-----
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV---DIKTL----- 169 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~---~~~~~----- 169 (987)
..++++|+++.|+. ...+|+++ |++.+|++++|+||||||||||+++|+|+.+|+.|.|.++|+ ++.++
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45889999999963 24589999 999999999999999999999999999999999999999998 55432
Q ss_pred CHHHHhcceEEEcCC-CCCc-hhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCc-ccccCCCCCCChHHHHH
Q 001980 170 QLRWLRDQIGLVNQE-PALF-ATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQR 246 (987)
Q Consensus 170 ~~~~~~~~i~~v~Q~-~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~~~g~~LSgGqkqR 246 (987)
....+++.++|++|+ ..++ ..|+.+|+.+.. ++.. . .+.+ ..+-+....||||| ||
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~------------~--~~~~v~~~ld~l~~lS~g~-qr 265 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA------EDFR------------D--RGQHVLLIMDSLTRYAMAQ-RE 265 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHHH------------T--TTCEEEEEEECHHHHHHHH-HH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHHH------------h--CCCCHHHHHHhHHHHHHHH-HH
Confidence 134577889999995 3444 459999987631 1110 0 0111 01112356799999 99
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC-----CC-----eEEEEcCCCCccccCCEEEEEeCCEEEE
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV-----GR-----TTVVVAHRLSTIRNVDTVAVIQQGQVVE 316 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-----~~-----tvi~vtH~~~~~~~~d~i~~l~~G~i~~ 316 (987)
++|| +.+|++ |++||+.+...+.+.+.++.+ |+ ||+++|||++ ...||++++|.+|+|+.
T Consensus 266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 266 IALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVL 335 (438)
T ss_dssp HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEE
T ss_pred HHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEE
Confidence 9999 888888 999999999999999988754 53 9999999999 56689999999999999
Q ss_pred ecChHHH
Q 001980 317 TGTHEEL 323 (987)
Q Consensus 317 ~g~~~~l 323 (987)
+|+++++
T Consensus 336 ~~~~~~~ 342 (438)
T 2dpy_A 336 SRRLAEA 342 (438)
T ss_dssp CHHHHHT
T ss_pred eCCHHHc
Confidence 9887765
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-23 Score=230.41 Aligned_cols=131 Identities=20% Similarity=0.278 Sum_probs=108.6
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHH
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENI 196 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni 196 (987)
+++++||.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+. +.....++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEEe--------------
Confidence 78999999999999999999999999999999999999999999998642 21112233455443
Q ss_pred hcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHH
Q 001980 197 LYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 276 (987)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~ 276 (987)
| |||+||++|||||..+|++++|||||+. .
T Consensus 224 ------------------------------g-------------gg~~~r~~la~aL~~~p~ilildE~~~~-------e 253 (330)
T 2pt7_A 224 ------------------------------G-------------GNITSADCLKSCLRMRPDRIILGELRSS-------E 253 (330)
T ss_dssp ------------------------------B-------------TTBCHHHHHHHHTTSCCSEEEECCCCST-------H
T ss_pred ------------------------------C-------------CChhHHHHHHHHhhhCCCEEEEcCCChH-------H
Confidence 0 8999999999999999999999999982 3
Q ss_pred HHHHHHhhhCCC-eEEEEcCCCCccccCCEEEEEeCCE
Q 001980 277 VQEALDRLMVGR-TTVVVAHRLSTIRNVDTVAVIQQGQ 313 (987)
Q Consensus 277 i~~~l~~~~~~~-tvi~vtH~~~~~~~~d~i~~l~~G~ 313 (987)
+.+.++.+..|. |+|++||+.+....+||+++|.+|+
T Consensus 254 ~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 254 AYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp HHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 455666665554 7999999999767799999998874
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.7e-23 Score=223.88 Aligned_cols=176 Identities=18% Similarity=0.241 Sum_probs=126.7
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC----HHHH--hcccEEEccccc-cc-c
Q 001980 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN----LKSL--RLKIGLVQQEPA-LF-A 834 (987)
Q Consensus 763 L~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----l~~l--R~~i~~VpQdp~-lF-~ 834 (987)
++++||++++|+.++|||+|||||||+++.|.|++.|++|+|.++|.|+.... +..+ |..+++++|++. ++ .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35688899999999999999999999999999999999999999999987653 2344 457999999997 65 4
Q ss_pred ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCCCC
Q 001980 835 ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA--ILLLDEATS 912 (987)
Q Consensus 835 gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~--ILlLDEaTS 912 (987)
.|+++|+.++.....+. ..++.+++.+. .+..+ ..|| |||++||||+..+|+ +|+|| ||+
T Consensus 170 ~~v~e~l~~~~~~~~d~---~lldt~gl~~~-------~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYDV---VLCDTSGRLHT-------NYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHTTCSE---EEECCCCCSSC-------CHHHH----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHcCCcc---hHHhcCCCCcc-------hhHHH----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 58999997532100000 00111111111 11122 2488 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEec---------Cchhhhc-cCEEEEEeCCEEE
Q 001980 913 ALDAESECVLQEALERLMRGRTTVLVAH---------RLSTIRG-VDCIGVVQDGRIV 960 (987)
Q Consensus 913 ~LD~~te~~I~~~l~~~~~~~TvI~IaH---------Rl~ti~~-~D~Iivl~~G~iv 960 (987)
++|+.+.. +.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.+
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 99998653 22322 23789999999 3333333 4789999999753
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.3e-21 Score=212.25 Aligned_cols=81 Identities=20% Similarity=0.226 Sum_probs=74.9
Q ss_pred CCChHHHHHHHHHHHhc---------cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEE
Q 001980 238 QLSGGQKQRIAIARAML---------KNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAV 308 (987)
Q Consensus 238 ~LSgGqkqRialARal~---------~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~ 308 (987)
.||||||||++|||+|+ .+|+|||||||||+||+..++.+.+.+.++. .|+|++|| ++. .+|++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998874 79999999 444 7899999
Q ss_pred EeCCEEEEecChHHH
Q 001980 309 IQQGQVVETGTHEEL 323 (987)
Q Consensus 309 l~~G~i~~~g~~~~l 323 (987)
|++|++++.|+++++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999988775
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-23 Score=230.45 Aligned_cols=176 Identities=14% Similarity=0.165 Sum_probs=131.0
Q ss_pred ccccEEEEeEEEECCCCCCccceeeeeEE-----------------------EeCCcEEEEEcCCCCChHHHHHHHhccC
Q 001980 741 IRGEIELRHVDFAYPSRPDVVVFKDFNLR-----------------------IRAGQSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 741 ~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~-----------------------I~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
.++.|+++||++.|. |+++++++. +++|+.+||+|+||||||||+++|.|++
T Consensus 40 ~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp TTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 456799999999993 577887775 8999999999999999999999999999
Q ss_pred CCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCC----CC-CCHHHHHHHHHHcCchhhHhhCCCc
Q 001980 798 DPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK----EG-ATEAEVVEAARAANVHGFVSALPNA 872 (987)
Q Consensus 798 ~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~----~~-~sd~ei~~al~~a~l~~~i~~lp~g 872 (987)
+|..|. .++++|+||+++|..|+++|+.+.. +. ...+.+.+.++..+ .|
T Consensus 115 ~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~---------~~ 168 (312)
T 3aez_A 115 ARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK---------SG 168 (312)
T ss_dssp HTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH---------TT
T ss_pred cccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC---------CC
Confidence 997663 5699999999999889999996532 21 12233444444332 23
Q ss_pred CC-CccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh--ccC
Q 001980 873 YK-TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR--GVD 949 (987)
Q Consensus 873 ld-t~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~--~~D 949 (987)
.. ..+ ..|||||+||+++|||++.+|+|||||||++.+|+.. ..+.+.+ + .+|+|.|..+... ..+
T Consensus 169 ~~~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~ 237 (312)
T 3aez_A 169 SDYACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVS 237 (312)
T ss_dssp CSCEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHH
T ss_pred cccCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHH
Confidence 22 333 3699999999999999999999999999999998622 1233333 3 4577888776642 245
Q ss_pred EEEEEeCCE
Q 001980 950 CIGVVQDGR 958 (987)
Q Consensus 950 ~Iivl~~G~ 958 (987)
|.+.+.+|+
T Consensus 238 R~~~~rd~~ 246 (312)
T 3aez_A 238 RFLAMRTTA 246 (312)
T ss_dssp HHHHHTTTG
T ss_pred HHHHHHhcc
Confidence 655554543
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-22 Score=219.64 Aligned_cols=147 Identities=16% Similarity=0.177 Sum_probs=97.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccc-cHHHHhccCCCCCC---H
Q 001980 775 SQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGAT---E 850 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~g-TIreNL~~~~~~~s---d 850 (987)
++|||||||||||||+++|+|+..|++|+|.++|.++.. ...++.+++++|++.++.. ||.||+.++..... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 489999999999999999999999999999999998743 3356889999999988754 99999988754221 1
Q ss_pred HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q 001980 851 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM 930 (987)
Q Consensus 851 ~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~ 930 (987)
+.+.+.++ .++...++ ..||||||||+++|||++. +++|||||++||+.. ..+.+.+.+
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~~-- 139 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLSK-- 139 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHHT--
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHHh--
Confidence 23333332 33333322 2599999999999999886 999999999999876 344444443
Q ss_pred CCCeEEEEecCchhhh
Q 001980 931 RGRTTVLVAHRLSTIR 946 (987)
Q Consensus 931 ~~~TvI~IaHRl~ti~ 946 (987)
.+++|+|.|+.+++.
T Consensus 140 -~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 140 -VVNIIPVIAKADTMT 154 (270)
T ss_dssp -TSEEEEEETTGGGSC
T ss_pred -cCcEEEEEeccccCC
Confidence 389999999988763
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-20 Score=210.58 Aligned_cols=82 Identities=22% Similarity=0.238 Sum_probs=76.3
Q ss_pred CCChhHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEE
Q 001980 883 QLSGGQKQRIAIARAVL---------KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGV 953 (987)
Q Consensus 883 ~LSgGQrQrlaLARAll---------r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iiv 953 (987)
.||||||||++|||+|+ .+|+|||||||||+||+.....+.+.|.+.. .|+|++|| ++. .+|+|++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998863 79999999 454 8899999
Q ss_pred EeCCEEEEecChhHHh
Q 001980 954 VQDGRIVEQGSHSELV 969 (987)
Q Consensus 954 l~~G~ive~Gt~~eLl 969 (987)
|++|+|++.|+|+++.
T Consensus 340 l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQA 355 (359)
T ss_dssp EETTEEEECCCTTTSC
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999999883
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-22 Score=219.11 Aligned_cols=146 Identities=18% Similarity=0.200 Sum_probs=94.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchh-cHHHHHhcCCCCCC---H
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEAT---M 205 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~---~ 205 (987)
.++|+||||||||||+++|+|+..|++|+|.++|.++... ..++.++|++|++.++.. ||.||+.||..... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC---CSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---eeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 4899999999999999999999999999999999887432 235679999999988866 99999999864221 2
Q ss_pred HHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 001980 206 AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM 285 (987)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~ 285 (987)
+.+.+... .++...++ .+||||||||+++|||++. +++||||+++||+...+ + ++.+.
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~-~---l~~L~ 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE-F---MKHLS 138 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH-H---HHHHH
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH-H---HHHHH
Confidence 23333222 12222221 2699999999999999886 99999999999998732 3 33333
Q ss_pred CCCeEEEEcCCCCcc
Q 001980 286 VGRTTVVVAHRLSTI 300 (987)
Q Consensus 286 ~~~tvi~vtH~~~~~ 300 (987)
+..++|+|.|+.+.+
T Consensus 139 ~~~~vI~Vi~K~D~l 153 (270)
T 3sop_A 139 KVVNIIPVIAKADTM 153 (270)
T ss_dssp TTSEEEEEETTGGGS
T ss_pred hcCcEEEEEeccccC
Confidence 338999999987665
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-23 Score=207.70 Aligned_cols=110 Identities=18% Similarity=0.219 Sum_probs=88.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhccCCCC---CceEEECCccCCCCC---HHHHh-cccE----EEccccccccccHHHHhc
Q 001980 774 QSQALVGASGSGKSSVIALIERFYDPT---AGKVMIDGKDIRRLN---LKSLR-LKIG----LVQQEPALFAASIFDNIA 842 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~~p~---~G~I~idG~di~~i~---l~~lR-~~i~----~VpQdp~lF~gTIreNL~ 842 (987)
++++|||+||||||||+++|.|+|+|+ .|.|++||.++.+++ .+.+| ++++ +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988887 77888 5788 899999988 222
Q ss_pred cCCCCCCHHHHHHHHHHcCchhhHhh-CCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 001980 843 YGKEGATEAEVVEAARAANVHGFVSA-LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 904 (987)
Q Consensus 843 ~~~~~~sd~ei~~al~~a~l~~~i~~-lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~I 904 (987)
+ . +++ .+++++++.. +| |+||.++|+ |||||||||+||||++++|+|
T Consensus 77 -~----~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 77 -V----S-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp -C----C-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGG
T ss_pred -C----C-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCcc
Confidence 1 1 222 7899999999 99 999999995 999999999999999999987
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-22 Score=221.06 Aligned_cols=175 Identities=18% Similarity=0.217 Sum_probs=125.3
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHHH--hcceEEEcCCCC-Cchh
Q 001980 118 FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ----LRWL--RDQIGLVNQEPA-LFAT 190 (987)
Q Consensus 118 l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~--~~~i~~v~Q~~~-l~~~ 190 (987)
++++||++++|++++|+||||||||||++.|+|+++|++|+|.++|.|+.... ...+ +..|+|++|++. +++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35688999999999999999999999999999999999999999998876542 1223 357999999998 7755
Q ss_pred -cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCC
Q 001980 191 -TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK--ILLLDEATS 267 (987)
Q Consensus 191 -tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~--illlDEpts 267 (987)
|++||+.++.....+ . ..++.. |..........+|| |||++||||+..+|+ +|+|| ||+
T Consensus 170 ~~v~e~l~~~~~~~~d---------~---~lldt~--gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYD---------V---VLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHTTCS---------E---EEECCC--CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHcCCc---------c---hHHhcC--CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 999999764210000 0 011111 33322233344688 999999999999999 99999 999
Q ss_pred CCChHHHHHHHHHHHhhhCCCeEEEEcCCCC---------cccc-CCEEEEEeCCEE
Q 001980 268 ALDAGSESIVQEALDRLMVGRTTVVVAHRLS---------TIRN-VDTVAVIQQGQV 314 (987)
Q Consensus 268 ~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~---------~~~~-~d~i~~l~~G~i 314 (987)
+||+.... +.+.+ ..+.|+|++||.-. .+.. .+.|.++..|+.
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99998542 12221 13889999999322 2222 467888888854
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-24 Score=229.57 Aligned_cols=174 Identities=20% Similarity=0.187 Sum_probs=144.5
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-CceEEECCccCCCCCHHHHhcccEEEcc-----cccccc
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT-AGKVMIDGKDIRRLNLKSLRLKIGLVQQ-----EPALFA 834 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~-~G~I~idG~di~~i~l~~lR~~i~~VpQ-----dp~lF~ 834 (987)
++|+++| +++|+.++|+||||||||||+++|.|+++|+ +|+|.++|.++..+. +..+++++| ++..|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~gl~~~~l~ 88 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFA 88 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHhCCCHHHHH
Confidence 4899999 9999999999999999999999999999998 999999999886553 455778899 666778
Q ss_pred ccHHHHhccCCCCC-------CHHHHHHHHHHcCch----------------hhH-------------hhCCCcCCCccC
Q 001980 835 ASIFDNIAYGKEGA-------TEAEVVEAARAANVH----------------GFV-------------SALPNAYKTPVG 878 (987)
Q Consensus 835 gTIreNL~~~~~~~-------sd~ei~~al~~a~l~----------------~~i-------------~~lp~gldt~vg 878 (987)
.+|+.+|.. .|+. +.+.++.+++.+... +.+ ..+++++++.|+
T Consensus 89 ~~la~aL~~-~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi~ 167 (261)
T 2eyu_A 89 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 167 (261)
T ss_dssp HHHHHHHHH-CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEEE
T ss_pred HHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHHHhhEEEE
Confidence 889999875 3433 666666666554211 111 124578999999
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCE--EEEeCCCCCCCHHH---------HHHHHHHHHHHcCCCeEEEEecCch
Q 001980 879 ERGVQLSGGQKQRIAIARAVLKNPAI--LLLDEATSALDAES---------ECVLQEALERLMRGRTTVLVAHRLS 943 (987)
Q Consensus 879 e~G~~LSgGQrQrlaLARAllr~p~I--LlLDEaTS~LD~~t---------e~~I~~~l~~~~~~~TvI~IaHRl~ 943 (987)
+++..+|+| ||+++||+++.+|+| +|+||+|+++|... +..++++++...+|+|.+.++||++
T Consensus 168 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 241 (261)
T 2eyu_A 168 QRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS 241 (261)
T ss_dssp EEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHHHC
T ss_pred EEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHHHh
Confidence 999999999 899999999999999 99999999999873 4578999999899999999999986
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.2e-22 Score=220.32 Aligned_cols=174 Identities=18% Similarity=0.244 Sum_probs=126.7
Q ss_pred eeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC----HHHH--hcccEEEccccc-cc-cc
Q 001980 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN----LKSL--RLKIGLVQQEPA-LF-AA 835 (987)
Q Consensus 764 ~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----l~~l--R~~i~~VpQdp~-lF-~g 835 (987)
+.+||++++|+.++|||+|||||||+++.|.|++.|++|+|.++|.|+.... +..+ |..+++++|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3477889999999999999999999999999999999999999999987653 2333 568999999987 55 56
Q ss_pred cHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCCCCC
Q 001980 836 SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA--ILLLDEATSA 913 (987)
Q Consensus 836 TIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~--ILlLDEaTS~ 913 (987)
|+++|+.++.....+. ..++.+++... .+..+ ..|| |||++||||+..+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d~---~lldt~Gl~~~-------~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDV---VLCDTSGRLHT-------NYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCSE---EEEECCCCSSC-------CHHHH----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCHH---HHHHhcCCChh-------hhhHH----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 8999997532100000 00111111111 11112 2488 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEec---------Cchhhhc-cCEEEEEeCCEE
Q 001980 914 LDAESECVLQEALERLMRGRTTVLVAH---------RLSTIRG-VDCIGVVQDGRI 959 (987)
Q Consensus 914 LD~~te~~I~~~l~~~~~~~TvI~IaH---------Rl~ti~~-~D~Iivl~~G~i 959 (987)
+|+.+.. +.+.+ ..+.|+|++|| .++.+.. .+.|..+..|+.
T Consensus 290 lD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 290 LNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9998663 22322 23789999999 3344433 478999999974
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-23 Score=227.83 Aligned_cols=142 Identities=20% Similarity=0.250 Sum_probs=110.5
Q ss_pred CCccEEEEeEEEECCCCCCccceeeeeEE-----------------------EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 96 VNGNIEFKNVTFSYPSRPDVIIFRDFSIF-----------------------FPAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 96 ~~~~i~~~~~~~~y~~~~~~~~l~~i~l~-----------------------i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.+..|+++||++.|. ++++++++. +++|++++|+||||||||||+++|.|++
T Consensus 40 ~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp TTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345699999999994 366777764 8999999999999999999999999999
Q ss_pred CCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCC----CCC-CHHHHHHHHHHHhHHHHHHhCCCC
Q 001980 153 DPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGK----PEA-TMAEVEAAASAANAHSFITLLPNG 227 (987)
Q Consensus 153 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~g 227 (987)
+|+.|. .+++||+|++.+++.|++||+.+.. +.. ..+.+. +.++.+..|
T Consensus 115 ~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~---------~~L~~l~~~ 168 (312)
T 3aez_A 115 ARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALM---------RFVTSVKSG 168 (312)
T ss_dssp HTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHH---------HHHHHHHTT
T ss_pred cccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHH---------HHHHHhCCC
Confidence 998663 3699999999988889999997532 211 112222 223322223
Q ss_pred CcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCh
Q 001980 228 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271 (987)
Q Consensus 228 ~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~ 271 (987)
.. ......|||||+||+++|||++.+|+|+|||||++.+|+
T Consensus 169 ~~---~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 169 SD---YACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp CS---CEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cc---cCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 32 122357999999999999999999999999999999986
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-23 Score=235.98 Aligned_cols=175 Identities=20% Similarity=0.210 Sum_probs=147.0
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-CceEEECCccCCCCCHHHHhcccEEEcc-----cccccc
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT-AGKVMIDGKDIRRLNLKSLRLKIGLVQQ-----EPALFA 834 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~-~G~I~idG~di~~i~l~~lR~~i~~VpQ-----dp~lF~ 834 (987)
++|++++ +++|+.++|+|||||||||++++|.|+++|+ +|+|.+.|.++. + .+|..+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3678776 8999999999999999999999999999998 899988776664 2 36788999999 899999
Q ss_pred ccHHHHhccCCCCC-------CHHHHHHHHHHcCchhh-------------H----------------hhCCCcCCCccC
Q 001980 835 ASIFDNIAYGKEGA-------TEAEVVEAARAANVHGF-------------V----------------SALPNAYKTPVG 878 (987)
Q Consensus 835 gTIreNL~~~~~~~-------sd~ei~~al~~a~l~~~-------------i----------------~~lp~gldt~vg 878 (987)
++|++||.. .|+. +++.++.+++.++.... + ..+++++++.|+
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 999999986 4554 67778888887654211 1 124678999999
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCE--EEEeCCCCCCCHH----H-----HHHHHHHHHHHcCCCeEEEEecCchh
Q 001980 879 ERGVQLSGGQKQRIAIARAVLKNPAI--LLLDEATSALDAE----S-----ECVLQEALERLMRGRTTVLVAHRLST 944 (987)
Q Consensus 879 e~G~~LSgGQrQrlaLARAllr~p~I--LlLDEaTS~LD~~----t-----e~~I~~~l~~~~~~~TvI~IaHRl~t 944 (987)
+++..+|+| ||+++||+++.+|+| +|+||+|+++|.. + +..++++++...+|+|.+.++||++.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 988889999 899999999999999 9999999999965 3 45688888888899999999999973
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-22 Score=211.84 Aligned_cols=167 Identities=20% Similarity=0.116 Sum_probs=107.7
Q ss_pred ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-HHHhcceEEEcCCCCCchh-cH
Q 001980 115 VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL-RWLRDQIGLVNQEPALFAT-TI 192 (987)
Q Consensus 115 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~v~Q~~~l~~~-tv 192 (987)
.++++| .++++|++++|+||||||||||+++|+|+++. +.+++ ++...++ ...++.++|++|++.+|+. |+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSV-SATTRAPRPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECC-CEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcc-cccccCCcccccCCCeeEecCHHHHHHHHh
Confidence 347788 79999999999999999999999999999863 44443 2211111 1235679999999988765 77
Q ss_pred HHHHhcCC------C--CCCHHHHHHH----------HHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 193 LENILYGK------P--EATMAEVEAA----------ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 193 ~eni~~~~------~--~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
.+|+.... . .....+..+. ++..++.+.....| ..|| ||+
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS-----------~l~ 139 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT-----------VFL 139 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------EEE
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------EEE
Confidence 77764210 0 0011222211 11222222222222 2344 899
Q ss_pred cCCCEEEEeCCCCCC----ChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEe
Q 001980 255 KNPKILLLDEATSAL----DAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQ 310 (987)
Q Consensus 255 ~~~~illlDEpts~L----D~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~ 310 (987)
.+|++++|||||+++ |+..++.+.+.++++. .+.|+|+|||+++.+.. ||+|++|.
T Consensus 140 ~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 140 APPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp ECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred ECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 999999999999998 6778889999998875 37999999999998875 89999984
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.8e-22 Score=201.70 Aligned_cols=172 Identities=15% Similarity=0.176 Sum_probs=128.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHH
Q 001980 773 GQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAE 852 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~e 852 (987)
|++++|+|+||||||||+++|.|+++ ++| |.+||.++.++. .+++++++++|+. +|+ +.|+.......+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~--- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEPP--- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCCC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccCC---
Confidence 78999999999999999999999999 999 999999886543 5789999999996 444 344432110000
Q ss_pred HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH-HHHH---HHccCCCEEEEeC--CCCCCCHHHHHHHHHHH
Q 001980 853 VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI-AIAR---AVLKNPAILLLDE--ATSALDAESECVLQEAL 926 (987)
Q Consensus 853 i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl-aLAR---Allr~p~ILlLDE--aTS~LD~~te~~I~~~l 926 (987)
+...+.++++.+..+|+|||+++ +++| |++++|+|||||| ||...|....+.+.+.+
T Consensus 70 -----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 70 -----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp -----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred -----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 11123468888889999999998 5566 7899999999999 89889998888887777
Q ss_pred HHHcCCCeEE----EEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHH
Q 001980 927 ERLMRGRTTV----LVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 981 (987)
Q Consensus 927 ~~~~~~~TvI----~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~ 981 (987)
+. ..|+| +|+||.+ ..-+|+|..+++|+|++... ++.+..|..+++
T Consensus 133 ~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~~-----~nr~~~~~~i~~ 182 (189)
T 2i3b_A 133 ST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVTK-----ENRNHLLPDIVT 182 (189)
T ss_dssp HC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECCS-----SSGGGHHHHHHH
T ss_pred hC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeCh-----HhHHHHHHHHHH
Confidence 63 34555 3459876 44568888889999988542 123445555543
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-21 Score=216.93 Aligned_cols=174 Identities=19% Similarity=0.223 Sum_probs=126.1
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHHH--hcceEEEcCCCC-Cchh-
Q 001980 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ----LRWL--RDQIGLVNQEPA-LFAT- 190 (987)
Q Consensus 119 ~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~--~~~i~~v~Q~~~-l~~~- 190 (987)
+++||++++|++++|+||||||||||++.|+|+++|++|+|.++|.|+.... ...+ +..|+|++|++. +++.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4678899999999999999999999999999999999999999998875532 1222 457999999997 7654
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCC
Q 001980 191 TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK--ILLLDEATSA 268 (987)
Q Consensus 191 tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~--illlDEpts~ 268 (987)
|++||+.++.....+ . ..++.. |..........+|| |||++||||+..+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d---------~---~lldt~--Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD---------V---VLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCS---------E---EEEECC--CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCH---------H---HHHHhc--CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 999999864210000 0 011111 33322233344688 999999999999999 99999 9999
Q ss_pred CChHHHHHHHHHHHhhhCCCeEEEEcCCC---------Ccccc-CCEEEEEeCCEE
Q 001980 269 LDAGSESIVQEALDRLMVGRTTVVVAHRL---------STIRN-VDTVAVIQQGQV 314 (987)
Q Consensus 269 LD~~~~~~i~~~l~~~~~~~tvi~vtH~~---------~~~~~-~d~i~~l~~G~i 314 (987)
||+..+.. .+.+ ..+.|+|++||.- +.+.. .+.|.++..|+.
T Consensus 290 lD~~~~~~---~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 290 LNMLPQAR---EFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGHHHHH---HHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCHHHHHH---HHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99986531 1211 1388999999932 22222 467888888853
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.5e-22 Score=207.03 Aligned_cols=167 Identities=17% Similarity=0.113 Sum_probs=109.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEcccccccc-ccHHH
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFD 839 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~-gTIre 839 (987)
++++| .+|++||.+||+||||||||||+++|.|+++ .|.+++.....-+....|+.++|++|++.+|. -|+++
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTT
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcC
Confidence 58898 7999999999999999999999999999985 35555422221111234678999999998775 35666
Q ss_pred HhccCC---C-----CCCHHHHHHHHHH----------cCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 001980 840 NIAYGK---E-----GATEAEVVEAARA----------ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901 (987)
Q Consensus 840 NL~~~~---~-----~~sd~ei~~al~~----------a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~ 901 (987)
|+.... . ..+.+++.+.++. .++.++....| ..|| ||+.+
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS-----------~l~~~ 141 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT-----------VFLAP 141 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------EEEEC
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------EEEEC
Confidence 653110 0 1223444433332 22322222222 1244 89999
Q ss_pred CCEEEEeCCCCCC----CHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEe
Q 001980 902 PAILLLDEATSAL----DAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQ 955 (987)
Q Consensus 902 p~ILlLDEaTS~L----D~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~ 955 (987)
|++++|||||+++ |+.+.+.+++.+++.. .++|+|+|+|+++.+.. ||+|++|.
T Consensus 142 p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 142 PSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp SCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 9999999999998 6778889999988874 37899999999998865 89999984
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-22 Score=209.76 Aligned_cols=159 Identities=17% Similarity=0.222 Sum_probs=126.8
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCC-------------CCCceEEECCccCCCCCHHHHhcccEEEcccccccccc
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYD-------------PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAAS 836 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gT 836 (987)
+++|++++||||||||||||+++|.|+++ |..|+ +||+++..++.+.+|+.+ +|++++|.++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999986 78897 699999999999999876 8999999999
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH-HHccCCCEEEEeCCCCCCC
Q 001980 837 IFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR-AVLKNPAILLLDEATSALD 915 (987)
Q Consensus 837 IreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR-Allr~p~ILlLDEaTS~LD 915 (987)
+++|+ ++. ++++++++++.....-+ .-.++|+++.... ++ .|| +++++|++++|||+|+++|
T Consensus 76 ~~~n~-~g~---~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d 138 (198)
T 1lvg_A 76 FSGNL-YGT---SKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRN 138 (198)
T ss_dssp ETTEE-EEE---EHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHT
T ss_pred ecCcc-CCC---CHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcC
Confidence 99998 653 68889999876432211 1134565554321 12 677 8999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeC
Q 001980 916 AESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 956 (987)
Q Consensus 916 ~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~ 956 (987)
.++++.|++.|.+..++ +.++| ++ ..+|+|+|+++
T Consensus 139 ~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 139 TETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp CSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 99999999999887654 45678 55 88999999885
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.7e-21 Score=212.24 Aligned_cols=194 Identities=16% Similarity=0.182 Sum_probs=144.1
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC-------CC
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT-------LQ 170 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~-------~~ 170 (987)
..++++++++.|+. ...+++++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++..+ ..
T Consensus 44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~ 120 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLP 120 (347)
T ss_dssp CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSC
T ss_pred CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhh
Confidence 35788999999973 24589999 9999999999999999999999999999999999999998865211 12
Q ss_pred HHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcc-cccCCCCCCChHHHHHHHH
Q 001980 171 LRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYST-QVGERGVQLSGGQKQRIAI 249 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~~~~g~~LSgGqkqRial 249 (987)
...+++.+.+++|... +. .+++..+.....+.+.... .|.+. .+-+...+||+|| ||+++
T Consensus 121 ~~~~~~~v~~~~~~~~----~~------------~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~l 181 (347)
T 2obl_A 121 QSTLSKCVLVVTTSDR----PA------------LERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGL 181 (347)
T ss_dssp HHHHTTEEEEEECTTS----CH------------HHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHH
T ss_pred hhhhhceEEEEECCCC----CH------------HHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHH
Confidence 2234455777776431 11 2233333333333333322 13321 1123466899999 99999
Q ss_pred HHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh---CCC-----eEEEEcCCCCccccCCEEEEEeCCEEEEecChH
Q 001980 250 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM---VGR-----TTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHE 321 (987)
Q Consensus 250 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~---~~~-----tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~ 321 (987)
| +.+|++ |++||+.....+.+.+.++. .|. ||+++||+++ -..||++++|.+|+|+.+++.+
T Consensus 182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~ 251 (347)
T 2obl_A 182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELA 251 (347)
T ss_dssp H---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHH
T ss_pred H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHH
Confidence 9 578887 99999999999999998875 266 8999999998 4458999999999999988766
Q ss_pred HH
Q 001980 322 EL 323 (987)
Q Consensus 322 ~l 323 (987)
++
T Consensus 252 ~~ 253 (347)
T 2obl_A 252 EE 253 (347)
T ss_dssp TT
T ss_pred Hc
Confidence 54
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.6e-21 Score=211.81 Aligned_cols=195 Identities=17% Similarity=0.184 Sum_probs=146.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC-------CCH
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR-------LNL 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~-------i~l 816 (987)
.++.+++++.|.. +..+|+++ |+|.+||++||+|+||||||||+++|.|+.+|+.|.|.++|.+.++ +..
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 4788999999953 34699999 9999999999999999999999999999999999999999975321 222
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCc-cCCCCCCCChhHHHHHHHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTP-VGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~-vge~G~~LSgGQrQrlaLA 895 (987)
..+++.+.+++|.+. + ..+.+..++....+.++... .|.+.. +-+...+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~~----~------------~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la 182 (347)
T 2obl_A 122 STLSKCVLVVTTSDR----P------------ALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA 182 (347)
T ss_dssp HHHTTEEEEEECTTS----C------------HHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH
T ss_pred hhhhceEEEEECCCC----C------------HHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH
Confidence 335555666666421 1 12233333333333333222 122210 012345799999 999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc---CCC-----eEEEEecCchhhhccCEEEEEeCCEEEEecChhH
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLM---RGR-----TTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~---~~~-----TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~e 967 (987)
+.+|++ |+++|+.....+.+.+++.. +|. ||++++|+++ -.-||++++|.+|+|+..|++++
T Consensus 183 ---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~ 252 (347)
T 2obl_A 183 ---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAE 252 (347)
T ss_dssp ---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHT
T ss_pred ---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHH
Confidence 688988 99999999999999998875 266 8999999999 45589999999999999999888
Q ss_pred Hhc
Q 001980 968 LVS 970 (987)
Q Consensus 968 Ll~ 970 (987)
+..
T Consensus 253 ~~~ 255 (347)
T 2obl_A 253 ENH 255 (347)
T ss_dssp TTC
T ss_pred cCC
Confidence 754
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=193.89 Aligned_cols=76 Identities=25% Similarity=0.323 Sum_probs=68.5
Q ss_pred CCCCCChHHHH------HHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCEEE
Q 001980 235 RGVQLSGGQKQ------RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVA 307 (987)
Q Consensus 235 ~g~~LSgGqkq------RialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~ 307 (987)
....||||||| |+++||||+.+|++|||||||++||+.....+.+.|.++. .++|+|+|||+.+....||+++
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~ 324 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI 324 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEE
Confidence 45689999999 6788899999999999999999999999999999998875 4789999999987777799999
Q ss_pred EEe
Q 001980 308 VIQ 310 (987)
Q Consensus 308 ~l~ 310 (987)
+|+
T Consensus 325 ~l~ 327 (339)
T 3qkt_A 325 RIS 327 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.1e-19 Score=210.33 Aligned_cols=77 Identities=21% Similarity=0.300 Sum_probs=71.7
Q ss_pred CCCC-ChHHHHHHHHHHHhccCC--CEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCC
Q 001980 236 GVQL-SGGQKQRIAIARAMLKNP--KILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQG 312 (987)
Q Consensus 236 g~~L-SgGqkqRialARal~~~~--~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G 312 (987)
...| |||||||++|||||+.+| ++|||||||++||+.+...+.+.|+++.+++|||+|||+++.+..||++++|+++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 3557 999999999999999999 9999999999999999999999999887789999999999988889999999655
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=206.31 Aligned_cols=76 Identities=20% Similarity=0.309 Sum_probs=71.3
Q ss_pred CCC-ChhHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCC
Q 001980 882 VQL-SGGQKQRIAIARAVLKNP--AILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDG 957 (987)
Q Consensus 882 ~~L-SgGQrQrlaLARAllr~p--~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G 957 (987)
..| |||||||++|||||+.+| ++|||||||++||+.+...|.+.|++..+++|||+|||+++.+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 456 999999999999999999 9999999999999999999999999987789999999999999889999999554
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.6e-21 Score=193.88 Aligned_cols=158 Identities=15% Similarity=0.185 Sum_probs=116.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHH
Q 001980 128 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAE 207 (987)
Q Consensus 128 G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~ 207 (987)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..+++ .++++++|++|+. .++ ++|+..- ....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~--~~~~-- 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRV--GLEP-- 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEEC--CCCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcc--cccC--
Confidence 78999999999999999999999999 999 999998875543 3577899999986 222 1222110 0000
Q ss_pred HHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHH-HHHH---HhccCCCEEEEeC--CCCCCChHHHHHHHHHH
Q 001980 208 VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI-AIAR---AMLKNPKILLLDE--ATSALDAGSESIVQEAL 281 (987)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRi-alAR---al~~~~~illlDE--pts~LD~~~~~~i~~~l 281 (987)
-+...+..+++.+..+|||||+++ ++++ |+..+|+++|||| |+..+|+...+.+.+.+
T Consensus 69 ----------------~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 69 ----------------PPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp ----------------CSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred ----------------CccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 000122368888899999999998 5566 6899999999999 89999998777777766
Q ss_pred HhhhCCCeEEE--Ec--CCCCccccCCEEEEEeCCEEEEe
Q 001980 282 DRLMVGRTTVV--VA--HRLSTIRNVDTVAVIQQGQVVET 317 (987)
Q Consensus 282 ~~~~~~~tvi~--vt--H~~~~~~~~d~i~~l~~G~i~~~ 317 (987)
.+ .+++|+ ++ |+.+ ...+|+|..+++|+|++-
T Consensus 133 ~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 133 ST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp HC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEEC
T ss_pred hC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEe
Confidence 53 345554 34 9876 455788888888998764
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.8e-19 Score=194.85 Aligned_cols=181 Identities=15% Similarity=0.113 Sum_probs=121.4
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCc-eEEECCccCCCCCHHHHhcccEEEccccccccccHHH
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG-KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 839 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G-~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIre 839 (987)
++|+++++.+++|+.++|+||||||||||++.|.+...|.+| .|.+.+.+ .+.+.+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 479999999999999999999999999999999999999878 77655443 3556677776666655432 2233
Q ss_pred HhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH-HHHHHHHHHHccCCCEEEEeCCCC---C--
Q 001980 840 NIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ-KQRIAIARAVLKNPAILLLDEATS---A-- 913 (987)
Q Consensus 840 NL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ-rQrlaLARAllr~p~ILlLDEaTS---~-- 913 (987)
|+..+. .++++..++.+. ++...+-. +.+...++|.+| +||+. |+|+..+|++|||||||+ +
T Consensus 97 ~l~~~~--~~~~~~~~~~~~-----~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~ 164 (296)
T 1cr0_A 97 SLKREI--IENGKFDQWFDE-----LFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASG 164 (296)
T ss_dssp HHHHHH--HHHTHHHHHHHH-----HHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-------
T ss_pred ccccCC--CCHHHHHHHHHH-----HhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCC
Confidence 443211 122233222222 11111111 122223689999 67777 999999999999999999 4
Q ss_pred -CCH-HHHHHHHHHHHHHc--CCCeEEEEecCc--h--------------------hhh-ccCEEEEEeCCEE
Q 001980 914 -LDA-ESECVLQEALERLM--RGRTTVLVAHRL--S--------------------TIR-GVDCIGVVQDGRI 959 (987)
Q Consensus 914 -LD~-~te~~I~~~l~~~~--~~~TvI~IaHRl--~--------------------ti~-~~D~Iivl~~G~i 959 (987)
+|. .....+.+.|+++. .++|||+++|.. + .+. .||+|++|++|+.
T Consensus 165 ~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 444 55567778887764 289999999995 4 444 5899999999875
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.8e-20 Score=195.25 Aligned_cols=131 Identities=16% Similarity=0.203 Sum_probs=100.2
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHH
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN-AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILEN 195 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 195 (987)
+|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++ .|++|++.-+
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i------------~~~~~~~~~~------- 74 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI------------EYVFKHKKSI------- 74 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC------------CSCCCCSSSE-------
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc------------eeecCCccee-------
Confidence 899999 8999999999999999999999999999998 99999998654 3444433110
Q ss_pred HhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHH
Q 001980 196 ILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 275 (987)
Q Consensus 196 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~ 275 (987)
. +. .+.|++ ...| |++|||||..+|+++++|||| |+++..
T Consensus 75 --v--~q---------------------~~~gl~------~~~l------~~~la~aL~~~p~illlDEp~---D~~~~~ 114 (261)
T 2eyu_A 75 --V--NQ---------------------REVGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETVE 114 (261)
T ss_dssp --E--EE---------------------EEBTTT------BSCH------HHHHHHHHHHCCSEEEESCCC---SHHHHH
T ss_pred --e--eH---------------------HHhCCC------HHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHH
Confidence 0 00 001221 1122 899999999999999999999 998765
Q ss_pred HHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeC
Q 001980 276 IVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQ 311 (987)
Q Consensus 276 ~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~ 311 (987)
.+.+ ....|.++++++|+.+....+||+++|..
T Consensus 115 ~~l~---~~~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 115 TALR---AAETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp HHHH---HHHTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred HHHH---HHccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 4443 33458999999999886666899888754
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=186.63 Aligned_cols=78 Identities=28% Similarity=0.387 Sum_probs=69.1
Q ss_pred CCCCChhHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEE
Q 001980 881 GVQLSGGQKQ------RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGV 953 (987)
Q Consensus 881 G~~LSgGQrQ------rlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~Iiv 953 (987)
...||||||| |+++|||++.+|++|||||||++||+.+...+.+.|++.. .++|+|+|||+.+....||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 3569999999 6788899999999999999999999999999999998864 46899999999887777999999
Q ss_pred Ee--CCE
Q 001980 954 VQ--DGR 958 (987)
Q Consensus 954 l~--~G~ 958 (987)
|+ +|.
T Consensus 326 l~~~~g~ 332 (339)
T 3qkt_A 326 ISLENGS 332 (339)
T ss_dssp EEEETTE
T ss_pred EEecCCc
Confidence 85 454
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.2e-19 Score=193.97 Aligned_cols=181 Identities=16% Similarity=0.146 Sum_probs=119.4
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHH
Q 001980 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG-HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILE 194 (987)
Q Consensus 116 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 194 (987)
++|+++++.+++|++++|+||||||||||++.|+|.+.|++| .|.+.+.+ .+...+++++.++.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 379999999999999999999999999999999999999888 67554432 2444555555555554322 2223
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHH-HHHHHHHHHhccCCCEEEEeCCCC---C--
Q 001980 195 NILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ-KQRIAIARAMLKNPKILLLDEATS---A-- 268 (987)
Q Consensus 195 ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq-kqRialARal~~~~~illlDEpts---~-- 268 (987)
++..+.. +.++..+.. .+.+...+ + .+.+...++|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 97 ~l~~~~~--~~~~~~~~~-----~~~l~~~~--l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~ 164 (296)
T 1cr0_A 97 SLKREII--ENGKFDQWF-----DELFGNDT--F--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASG 164 (296)
T ss_dssp HHHHHHH--HHTHHHHHH-----HHHHSSSC--E--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-------
T ss_pred ccccCCC--CHHHHHHHH-----HHHhccCC--E--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCC
Confidence 3332210 011111111 11222221 1 1333345789999 67777 999999999999999999 4
Q ss_pred -CCh-HHHHHHHHHHHhhh--CCCeEEEEcCCC--C--------------------ccc-cCCEEEEEeCCEE
Q 001980 269 -LDA-GSESIVQEALDRLM--VGRTTVVVAHRL--S--------------------TIR-NVDTVAVIQQGQV 314 (987)
Q Consensus 269 -LD~-~~~~~i~~~l~~~~--~~~tvi~vtH~~--~--------------------~~~-~~d~i~~l~~G~i 314 (987)
+|. .....+.+.|+++. .+.|||++||+. + .+. .||+|++|++|+.
T Consensus 165 ~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 455 55677888888774 289999999995 4 454 4899999998864
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-18 Score=218.96 Aligned_cols=170 Identities=20% Similarity=0.173 Sum_probs=121.4
Q ss_pred ccEEEEe-----EEEECCCCCCccceeeeeEEEeC-------CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q 001980 98 GNIEFKN-----VTFSYPSRPDVIIFRDFSIFFPA-------GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 165 (987)
Q Consensus 98 ~~i~~~~-----~~~~y~~~~~~~~l~~i~l~i~~-------G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~ 165 (987)
..|+++| +++.|++ +..+++|++|++++ |++++|+||||||||||+|.+ |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4599999 9999943 23589999999987 999999999999999999999 98763
Q ss_pred CCCCCHHHHhcceE-EEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHH
Q 001980 166 IKTLQLRWLRDQIG-LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 244 (987)
Q Consensus 166 ~~~~~~~~~~~~i~-~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqk 244 (987)
..++| ||||++. ..|+.|||... .++.+.+ ..+..++|++++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~r---------------ig~~d~~-----------~~~~stf~~em~ 857 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFTR---------------LGASDRI-----------MSGESTFFVELS 857 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEEE---------------CC--------------------CHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHHH---------------cCCHHHH-----------hhchhhhHHHHH
Confidence 23566 9999873 44677776421 0111111 112245777776
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCChHH-HHHHHHHHHhhh-C-CCeEEEEcCCCCcccc-CCEEEEEeCCEEE--Eec
Q 001980 245 QRIAIARAMLKNPKILLLDEATSALDAGS-ESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVV--ETG 318 (987)
Q Consensus 245 qRialARal~~~~~illlDEpts~LD~~~-~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~--~~g 318 (987)
+ +++|++++.+|+++|||||++|+|+.. ...++..++.+. + |.|+|++||+++.+.. +|++.++ +|++. +.|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 5 999999999999999999999999986 455677777774 3 8999999999998876 7988776 58876 445
Q ss_pred Ch
Q 001980 319 TH 320 (987)
Q Consensus 319 ~~ 320 (987)
+.
T Consensus 936 ~~ 937 (1022)
T 2o8b_B 936 EC 937 (1022)
T ss_dssp --
T ss_pred Cc
Confidence 43
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.9e-18 Score=202.34 Aligned_cols=152 Identities=18% Similarity=0.138 Sum_probs=119.2
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHh-cCC
Q 001980 122 SIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENIL-YGK 200 (987)
Q Consensus 122 ~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~-~~~ 200 (987)
+..+++|++++|+|+||||||||++.++|...|. |+ +.+.|++|++ ...+.++.. ++.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~---~~~l~~~~~~~g~ 333 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEES---RAQLLRNAYSWGM 333 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSC---HHHHHHHHHTTSC
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCC---HHHHHHHHHHcCC
Confidence 3478999999999999999999999999998874 43 1256677876 335666543 221
Q ss_pred CCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChH-----HHH
Q 001980 201 PEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-----SES 275 (987)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~-----~~~ 275 (987)
+.+ +.. . .|...........|||||+||+++||++..+|+++|+| ||++||.. .++
T Consensus 334 ---~~~------------~~~-~--~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 334 ---DFE------------EME-R--QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp ---CHH------------HHH-H--TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred ---CHH------------HHH-h--CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 111 111 1 14444556667789999999999999999999999999 99999999 888
Q ss_pred HHHHHHHhhh-CCCeEEEEcCCC----------Ccccc-CCEEEEEeCCE
Q 001980 276 IVQEALDRLM-VGRTTVVVAHRL----------STIRN-VDTVAVIQQGQ 313 (987)
Q Consensus 276 ~i~~~l~~~~-~~~tvi~vtH~~----------~~~~~-~d~i~~l~~G~ 313 (987)
.+.+.++.++ .|.|+|++||+. ..+.. ||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 8888887775 589999999998 66665 79999999886
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-20 Score=187.46 Aligned_cols=111 Identities=17% Similarity=0.178 Sum_probs=86.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECCEeCCCCC---HHHHh-cceE----EEcCCCCCchhcHHHHHh
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFYDPN---AGHVLLDNVDIKTLQ---LRWLR-DQIG----LVNQEPALFATTILENIL 197 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~---~~~~~-~~i~----~v~Q~~~l~~~tv~eni~ 197 (987)
++++|+|+||||||||+++|+|+++|+ .|+|.++|.++.+++ .+.+| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 589999999999999999999999998 899999999987775 55666 4688 899999877 111
Q ss_pred cCCCCCCHHHHHHHHHHHhHHHHHHh-CCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 001980 198 YGKPEATMAEVEAAASAANAHSFITL-LPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKIL 260 (987)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~il 260 (987)
+ . ++. .+++++++.. +| |++|.++|+ |||||||||+||||++++|++.
T Consensus 77 -~----~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V----S-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C----C-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C----C-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 1 111 5678889998 99 999999995 9999999999999999999873
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.2e-18 Score=213.51 Aligned_cols=172 Identities=13% Similarity=0.146 Sum_probs=123.3
Q ss_pred ccEEEEe-----EEEECCCCCCccceeeeeEEEeC-------CcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcc
Q 001980 743 GEIELRH-----VDFAYPSRPDVVVFKDFNLRIRA-------GQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD 810 (987)
Q Consensus 743 g~I~f~~-----vsf~Y~~~~~~~vL~~vsl~I~~-------Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~d 810 (987)
+.|+++| |++.|++ +..|++|++|++++ |+.++|+|||||||||+++++ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4699999 9999943 23699999999988 999999999999999999999 99863
Q ss_pred CCCCCHHHHhcccE-EEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 811 IRRLNLKSLRLKIG-LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 811 i~~i~l~~lR~~i~-~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
+.++| +|||++. .-|+.+||. .. .++.+.+. .+-..+|++++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~-~r--------------ig~~d~~~-----------~~~stf~~em~ 857 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVF-TR--------------LGASDRIM-----------SGESTFFVELS 857 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEE-EE--------------CC--------------------CHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHH-HH--------------cCCHHHHh-----------hchhhhHHHHH
Confidence 34566 9999984 557777773 11 12222111 11235788777
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHc-C-CCeEEEEecCchhhhc-cCEEEEEeCCEEE--Eec
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAES-ECVLQEALERLM-R-GRTTVLVAHRLSTIRG-VDCIGVVQDGRIV--EQG 963 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~t-e~~I~~~l~~~~-~-~~TvI~IaHRl~ti~~-~D~Iivl~~G~iv--e~G 963 (987)
+ +++||+++.+|++|||||||+++|+.. ...++..|+.+. + ++|+|++||+++.+.. +|++.|+ +|++. +.|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 5 999999999999999999999999987 466777787764 3 8999999999998865 7998887 58887 556
Q ss_pred ChhH
Q 001980 964 SHSE 967 (987)
Q Consensus 964 t~~e 967 (987)
++++
T Consensus 936 ~~~~ 939 (1022)
T 2o8b_B 936 ECED 939 (1022)
T ss_dssp ----
T ss_pred Cccc
Confidence 5543
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-20 Score=209.11 Aligned_cols=148 Identities=17% Similarity=0.302 Sum_probs=98.7
Q ss_pred ceeeeeEEEeC--CcEEEEEcCCCCChHHHHHHHhccCCCCC----ceEEE----CCccCCCCCHHHHhcccEEEccccc
Q 001980 762 VFKDFNLRIRA--GQSQALVGASGSGKSSVIALIERFYDPTA----GKVMI----DGKDIRRLNLKSLRLKIGLVQQEPA 831 (987)
Q Consensus 762 vL~~vsl~I~~--Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~----G~I~i----dG~di~~i~l~~lR~~i~~VpQdp~ 831 (987)
+.+.|+++|++ |++++|+|+||||||||+++|.|+++|++ |+|.+ +|.++ .++..++ .+|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45789999999 99999999999999999999999999999 99987 46666 5566666 56999999999
Q ss_pred cccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCc--CCC--------ccCCCCCCCChhHHHHHHHHHHH---
Q 001980 832 LFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNA--YKT--------PVGERGVQLSGGQKQRIAIARAV--- 898 (987)
Q Consensus 832 lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~g--ldt--------~vge~G~~LSgGQrQrlaLARAl--- 898 (987)
+|.+|+++||.++..+..+...+..+.......++..++.+ ++. |..++|.++|+||+||++++|+|
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l 314 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKL 314 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHH
T ss_pred HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHH
Confidence 99999999998765544444444444333334444433322 221 22244555666666666666666
Q ss_pred cc--CCCEEEEeCCC
Q 001980 899 LK--NPAILLLDEAT 911 (987)
Q Consensus 899 lr--~p~ILlLDEaT 911 (987)
++ +++|+++||||
T Consensus 315 ~~~~~~~ililde~~ 329 (365)
T 1lw7_A 315 LDKYKVPYIEIESPS 329 (365)
T ss_dssp HHGGGCCCEEEECSS
T ss_pred HHHcCCCEEEeCCCC
Confidence 44 56666666664
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-19 Score=192.15 Aligned_cols=167 Identities=12% Similarity=0.109 Sum_probs=107.3
Q ss_pred CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHH
Q 001980 759 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIF 838 (987)
Q Consensus 759 ~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIr 838 (987)
+.++|+|+||++++|+.+||+|+||||||||+++|.+++ |.+.+| ..++.+++++||++...-|++
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 446999999999999999999999999999999999976 666555 367889999999754456898
Q ss_pred HHhccCCC-------C-CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 001980 839 DNIAYGKE-------G-ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 910 (987)
Q Consensus 839 eNL~~~~~-------~-~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEa 910 (987)
+|+.+... + ...+++.+.++. +..+.+..+ ..||+||+||+++ ++++.+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKN---------IVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHH---------HHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHH---------HHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 88754221 1 122333333332 223344444 3699999999988 688999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh-hcc-CEEEEEeCCEEEEecChhHHhc
Q 001980 911 TSALDAESECVLQEALERLMRGRTTVLVAHRLSTI-RGV-DCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 911 TS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti-~~~-D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
....|.. +.+. .+.|++++||....+ +.+ +.+ ++|+ +++++++
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 8877754 2222 378999999974433 333 323 6675 5666653
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.9e-20 Score=192.95 Aligned_cols=140 Identities=16% Similarity=0.174 Sum_probs=111.1
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccc---cHHHHhccCC-
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA---SIFDNIAYGK- 845 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~g---TIreNL~~~~- 845 (987)
.++|+++||+|+||||||||+++|.|++.| ++++|+||+++++. |+++|+.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999875 58999999998854 5777654332
Q ss_pred -C-CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH----HHHHHHHHHHccCCCEEEEeCCCCC------
Q 001980 846 -E-GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ----KQRIAIARAVLKNPAILLLDEATSA------ 913 (987)
Q Consensus 846 -~-~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ----rQrlaLARAllr~p~ILlLDEaTS~------ 913 (987)
+ ....+.+.++++..++.+.+.. | . ..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-~-~---------~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-P-V---------YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-C-C---------EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-C-c---------ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 2 2345677788877766555432 2 2 3466664 5799999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHHHc--CCCeEEEEecCc
Q 001980 914 -LDAESECVLQEALERLM--RGRTTVLVAHRL 942 (987)
Q Consensus 914 -LD~~te~~I~~~l~~~~--~~~TvI~IaHRl 942 (987)
||+.++..+++.+.+.. +|+|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999998753 589999999985
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-17 Score=161.27 Aligned_cols=81 Identities=23% Similarity=0.316 Sum_probs=71.8
Q ss_pred cCCCCCCChHHHHHHHHH------HHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCccccCCE
Q 001980 233 GERGVQLSGGQKQRIAIA------RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDT 305 (987)
Q Consensus 233 ~~~g~~LSgGqkqRialA------Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~ 305 (987)
...+.+||||||||++|| |||+.+|+++||||||++||+.+++.+.+.+.++. .|+|+|++||+++....||+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ 131 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 131 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCE
Confidence 345678999999999876 99999999999999999999999999999999875 48999999999966666999
Q ss_pred EEEE--eCCE
Q 001980 306 VAVI--QQGQ 313 (987)
Q Consensus 306 i~~l--~~G~ 313 (987)
+++| ++|.
T Consensus 132 ii~l~~~~g~ 141 (148)
T 1f2t_B 132 VIRISLENGS 141 (148)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEcCCCe
Confidence 9999 4564
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.71 E-value=8.7e-19 Score=196.21 Aligned_cols=166 Identities=17% Similarity=0.193 Sum_probs=121.2
Q ss_pred ceeee-eEEEeCCcEEEEEcCCCCChHHHHHHHhccC--CCCC----ce-EEECCccCCCCCHHHHhcccEEEccccccc
Q 001980 762 VFKDF-NLRIRAGQSQALVGASGSGKSSVIALIERFY--DPTA----GK-VMIDGKDIRRLNLKSLRLKIGLVQQEPALF 833 (987)
Q Consensus 762 vL~~v-sl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~--~p~~----G~-I~idG~di~~i~l~~lR~~i~~VpQdp~lF 833 (987)
.|+.+ ++.|++|+.++|+|++|||||||++.|.+.+ +|++ |+ |+||+.+.- .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 56665 6899999999999999999999999999998 6665 67 999998752 257788999999988
Q ss_pred cccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc-------cCCCEEE
Q 001980 834 AASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL-------KNPAILL 906 (987)
Q Consensus 834 ~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll-------r~p~ILl 906 (987)
..++.+|+.+... .+ |.+|+|++.++++++ .+|++||
T Consensus 193 ~~~v~~ni~~~~~-~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 193 PDEVLKHIYVARA-FN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HHHHGGGEEEEEC-CS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HHHHhhCEEEEec-CC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 8899999876432 11 456788888888888 6899999
Q ss_pred EeCCCCCCCHHH-------H-----HHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 907 LDEATSALDAES-------E-----CVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 907 LDEaTS~LD~~t-------e-----~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
+||||+.+|++. + ..+.+.|.+.. .++|||+++|....... ++.+.+...|++++++.+..|.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 999999999863 1 33444444433 38999999998875542 3456778889998888877664
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.1e-17 Score=158.49 Aligned_cols=80 Identities=26% Similarity=0.349 Sum_probs=71.1
Q ss_pred CCCCCChhHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEE
Q 001980 880 RGVQLSGGQKQRIAIA------RAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIG 952 (987)
Q Consensus 880 ~G~~LSgGQrQrlaLA------RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~Ii 952 (987)
...+||||||||++|| |||+++|++|||||||++||+++...+.+.|++.. +++|+|+|||+++....||+|+
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ii 133 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI 133 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEE
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEEE
Confidence 4568999999999876 99999999999999999999999999999999875 4789999999997666789999
Q ss_pred EE--eCCEE
Q 001980 953 VV--QDGRI 959 (987)
Q Consensus 953 vl--~~G~i 959 (987)
+| ++|..
T Consensus 134 ~l~~~~g~s 142 (148)
T 1f2t_B 134 RISLENGSS 142 (148)
T ss_dssp EEEEETTEE
T ss_pred EEEcCCCeE
Confidence 99 56643
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.1e-17 Score=188.10 Aligned_cols=73 Identities=22% Similarity=0.288 Sum_probs=67.2
Q ss_pred CCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC-CCeEEEEcCCCCccccCCEEEEEe
Q 001980 238 QLSGGQKQRIAIARAML----KNPKILLLDEATSALDAGSESIVQEALDRLMV-GRTTVVVAHRLSTIRNVDTVAVIQ 310 (987)
Q Consensus 238 ~LSgGqkqRialARal~----~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~~d~i~~l~ 310 (987)
.||||||||++||++|+ .+|+++||||||++||+.....+.+.|.++.. +.++|++||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 68999999999999999999999999988753 789999999988778899999885
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-18 Score=179.18 Aligned_cols=152 Identities=16% Similarity=0.222 Sum_probs=101.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-------CccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHH
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-------NAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENI 196 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-------~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni 196 (987)
-+++|++++|+||||||||||+++|+|.+.| ..|.+++++.+. .+ ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 5899999999999999999999999996655 445788887542 11 2357788888888878999998
Q ss_pred hcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCCCCCCChH--
Q 001980 197 LYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM--LKNPKILLLDEATSALDAG-- 272 (987)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal--~~~~~illlDEpts~LD~~-- 272 (987)
.+.......+.. .... .+.+.+. +++ ..+|+++++|||++.+|+.
T Consensus 95 ~~~~~~~~~~~~-~~~~--~~~~~~~----------------------------~~~~~~~~~~llilDe~~~~l~~~~~ 143 (231)
T 4a74_A 95 YVARAFNSNHQM-LLVQ--QAEDKIK----------------------------ELLNTDRPVKLLIVDSLTSHFRSEYI 143 (231)
T ss_dssp EEEECCSHHHHH-HHHH--HHHHHHH----------------------------HHTTSSSCEEEEEEETSSHHHHHHSC
T ss_pred EEEecCChHHHH-HHHH--HHHHHHH----------------------------HhcccCCceeEEEECChHHHhccccC
Confidence 875432211111 1000 0111111 111 3589999999999999984
Q ss_pred -----H-----HHHHHHHHHhhh--CCCeEEEEcCCCC----cccc-CCEEEEEeCC
Q 001980 273 -----S-----ESIVQEALDRLM--VGRTTVVVAHRLS----TIRN-VDTVAVIQQG 312 (987)
Q Consensus 273 -----~-----~~~i~~~l~~~~--~~~tvi~vtH~~~----~~~~-~d~i~~l~~G 312 (987)
. ...+.+.|.++. .|.|||++||... .+.. +|++++|++|
T Consensus 144 ~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 144 GRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 1 125666666553 3899999999544 4665 7999999875
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6e-17 Score=200.40 Aligned_cols=167 Identities=14% Similarity=0.112 Sum_probs=119.0
Q ss_pred ccEEEEeEEEECCCC--CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHH--------HcCCCCCccEEEECCEeCC
Q 001980 98 GNIEFKNVTFSYPSR--PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLI--------ERFYDPNAGHVLLDNVDIK 167 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~--~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l--------~g~~~~~~G~i~~~g~~~~ 167 (987)
..+.+++...-+-.. ....+++|++|++++|++++|+||||||||||+|++ .|.+.|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 358888766544221 134688999999999999999999999999999999 66665554321
Q ss_pred CCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHH
Q 001980 168 TLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247 (987)
Q Consensus 168 ~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRi 247 (987)
++++. .+|. .+|. .+.+ ...+|+|++++.
T Consensus 702 ----------~~~~d---~i~~-------~ig~-----------------~d~l--------------~~~lStf~~e~~ 730 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVGA-----------------GDSQ--------------LKGVSTFMAEML 730 (934)
T ss_dssp ----------EECCS---EEEE-------ECC----------------------------------------CHHHHHHH
T ss_pred ----------chHHH---HHHH-------hcCc-----------------hhhH--------------HHhHhhhHHHHH
Confidence 11110 0010 0110 0111 125788888888
Q ss_pred HHHHHh--ccCCCEEEEeCCCCCCChHHHHHH-HHHHHhhh--CCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHH
Q 001980 248 AIARAM--LKNPKILLLDEATSALDAGSESIV-QEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEE 322 (987)
Q Consensus 248 alARal--~~~~~illlDEpts~LD~~~~~~i-~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 322 (987)
.+|+++ +.+|+++||||||+|+|+.....+ +..++.+. .|.|+|++||+.+....+|++..+++|++...++.++
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 888888 999999999999999999877666 55555554 3899999999988888899999999999988776554
Q ss_pred H
Q 001980 323 L 323 (987)
Q Consensus 323 l 323 (987)
+
T Consensus 811 l 811 (934)
T 3thx_A 811 L 811 (934)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=183.35 Aligned_cols=73 Identities=22% Similarity=0.267 Sum_probs=67.9
Q ss_pred CCChhHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhccCEEEEEe
Q 001980 883 QLSGGQKQRIAIARAVL----KNPAILLLDEATSALDAESECVLQEALERLMR-GRTTVLVAHRLSTIRGVDCIGVVQ 955 (987)
Q Consensus 883 ~LSgGQrQrlaLARAll----r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~-~~TvI~IaHRl~ti~~~D~Iivl~ 955 (987)
.||||||||++|||+|+ ++|+++||||||++||+.....+.+.|++..+ +.++|+|||+...+..||++++|.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 68999999999999999999999999998753 689999999998888899999985
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.9e-18 Score=205.94 Aligned_cols=147 Identities=18% Similarity=0.183 Sum_probs=112.0
Q ss_pred CccEEEEeEEEECCCC--CCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCccEEEECCEeCCCCCHHH
Q 001980 97 NGNIEFKNVTFSYPSR--PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-PNAGHVLLDNVDIKTLQLRW 173 (987)
Q Consensus 97 ~~~i~~~~~~~~y~~~--~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-~~~G~i~~~g~~~~~~~~~~ 173 (987)
.+.+++++.. +|-- .+..+++|+||+ |++++|+||||||||||+|+|+|+.. ++.|.+.-.
T Consensus 548 ~~~i~i~~~r--HP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa----------- 611 (765)
T 1ewq_A 548 GDRLQIRAGR--HPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA----------- 611 (765)
T ss_dssp SSSEEEEEEC--CTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS-----------
T ss_pred CCcEEEEEeE--CceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeeh-----------
Confidence 3458888873 4421 134689999998 99999999999999999999999874 677865310
Q ss_pred HhcceEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 174 LRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 174 ~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
.+..+++++| +|.. ++.||+.. .+|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~---------------------------------------g~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG---------------------------------------GKSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC---------------------------------------------CCSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh---------------------------------------cccHHHHHHHHHHHH
Confidence 1346888877 4543 66665432 268999999999999
Q ss_pred h--ccCCCEEEEeCC---CCCCChHHH-HHHHHHHHhhhCCCeEEEEcCCCCccccC
Q 001980 253 M--LKNPKILLLDEA---TSALDAGSE-SIVQEALDRLMVGRTTVVVAHRLSTIRNV 303 (987)
Q Consensus 253 l--~~~~~illlDEp---ts~LD~~~~-~~i~~~l~~~~~~~tvi~vtH~~~~~~~~ 303 (987)
+ +.+|+++||||| |++||+.+. ..+.+.+.+ .|.|+|++||+.+....+
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 9 999999999999 999999875 568888876 489999999998776554
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-19 Score=205.50 Aligned_cols=174 Identities=20% Similarity=0.270 Sum_probs=136.9
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEeCCCCCHHHHhcceEEEcC-----CCCCchh
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN-AGHVLLDNVDIKTLQLRWLRDQIGLVNQ-----EPALFAT 190 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~v~Q-----~~~l~~~ 190 (987)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++. + .++..++|++| ++..|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~~ 200 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFAD 200 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSHH
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHHH
Confidence 466655 7899999999999999999999999999998 899987765553 2 24668999999 8889999
Q ss_pred cHHHHHhcCCCCC-------CHHHHHHHHHHHhH-----------------HHHHH------------hCCCCCcccccC
Q 001980 191 TILENILYGKPEA-------TMAEVEAAASAANA-----------------HSFIT------------LLPNGYSTQVGE 234 (987)
Q Consensus 191 tv~eni~~~~~~~-------~~~~~~~~~~~~~~-----------------~~~~~------------~~~~g~~t~~~~ 234 (987)
++++|+... |+. +.+.+..+++.++. ...+. .++.++++.+++
T Consensus 201 ~l~~~L~~~-pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~q 279 (372)
T 2ewv_A 201 ALRAALRED-PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 279 (372)
T ss_dssp HHHHHTTSC-CSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHhhhC-cCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEE
Confidence 999999974 433 45555555554321 11111 235578889999
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCE--EEEeCCCCCCChH----H-----HHHHHHHHHhhhCCCeEEEEcCCCCc
Q 001980 235 RGVQLSGGQKQRIAIARAMLKNPKI--LLLDEATSALDAG----S-----ESIVQEALDRLMVGRTTVVVAHRLST 299 (987)
Q Consensus 235 ~g~~LSgGqkqRialARal~~~~~i--lllDEpts~LD~~----~-----~~~i~~~l~~~~~~~tvi~vtH~~~~ 299 (987)
++..+||| ||+++||+++.+|++ +|+||+|++||.. + +....+.+..+.+|+|.+.+.||+..
T Consensus 280 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 280 RLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 88899999 899999999999999 9999999999965 2 23466667777789999999999874
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-18 Score=185.60 Aligned_cols=166 Identities=14% Similarity=0.150 Sum_probs=102.7
Q ss_pred CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCch-hcH
Q 001980 114 DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTI 192 (987)
Q Consensus 114 ~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv 192 (987)
..++|+|+||++++|++++|+||||||||||+++|+|++ |.+.++ ..++.++|++|++ ++. -|+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCc-CccccCH
Confidence 345899999999999999999999999999999999976 554443 2467899999996 443 489
Q ss_pred HHHHhcCCCC--------CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 001980 193 LENILYGKPE--------ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE 264 (987)
Q Consensus 193 ~eni~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDE 264 (987)
.+|+.+.... ...+.+.+. ++.+..+.+. ....||+||+||+++ +++..+|+++||||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------L~~l~~~~~~----~~~~ls~g~~~r~~~-~~~~~~~~~lilDg 141 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHPDAFDNDLMHRT---------LKNIVEGKTV----EVPTYDFVTHSRLPE-TTVVYPADVVLFEG 141 (245)
T ss_dssp HHHHHHHTTCCCTTSGGGBCHHHHHHH---------HHHHHTTCCE----EECCEETTTTEECSS-CEEECCCSEEEEEC
T ss_pred hHhhhhhccCCCCCCcccccHHHHHHH---------HHHHHCCCCe----ecccccccccCccCc-eEEecCCCEEEEeC
Confidence 9988653211 111112211 2211122222 335799999999988 68899999999999
Q ss_pred CCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcc-ccC-CEEEEEeCCEEEEecChHHHHH
Q 001980 265 ATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI-RNV-DTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 265 pts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~-~~~-d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|....|.. +.++ .+.|++++||+...+ +.+ +++ ++|+ +.+++.+
T Consensus 142 ~~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 142 ILVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp TTTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred ccccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 98877764 2222 378999999974333 333 333 5564 5666543
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-19 Score=201.57 Aligned_cols=148 Identities=11% Similarity=0.080 Sum_probs=117.0
Q ss_pred EEEeEEEE---CCCCCCccce---------eeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC
Q 001980 746 ELRHVDFA---YPSRPDVVVF---------KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR 813 (987)
Q Consensus 746 ~f~~vsf~---Y~~~~~~~vL---------~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~ 813 (987)
+|+||+|+ |++. +.++| +++||.|++|+.++|+|+||||||||+++|.|+++|++|.|+|+|. .+
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e 213 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PE 213 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SC
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--cc
Confidence 89999999 8532 23466 9999999999999999999999999999999999999999999985 46
Q ss_pred CCHHHHhcccEEEc-ccccc---ccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 814 LNLKSLRLKIGLVQ-QEPAL---FAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 814 i~l~~lR~~i~~Vp-Qdp~l---F~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
+.+..+|+.+++++ |++.+ +..|+++||..+....+|..+...++.+.+.+++..+|.|++|.+++-+.+-..+..
T Consensus 214 ~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~ 293 (361)
T 2gza_A 214 LFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTF 293 (361)
T ss_dssp CCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHH
T ss_pred cCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHH
Confidence 66666789999999 99886 888999999876554444444444445566778888899999999988888888999
Q ss_pred HHHHHHH
Q 001980 890 QRIAIAR 896 (987)
Q Consensus 890 QrlaLAR 896 (987)
+|+....
T Consensus 294 ~Rl~~l~ 300 (361)
T 2gza_A 294 ERLALMV 300 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998775
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-17 Score=201.48 Aligned_cols=147 Identities=19% Similarity=0.204 Sum_probs=114.2
Q ss_pred cccEEEEeEEEECCCC--CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-CCCceEEECCccCCCCCHHH
Q 001980 742 RGEIELRHVDFAYPSR--PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-PTAGKVMIDGKDIRRLNLKS 818 (987)
Q Consensus 742 ~g~I~f~~vsf~Y~~~--~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-p~~G~I~idG~di~~i~l~~ 818 (987)
.+.|++++. +||-- .+..|++|+||+ |+.++|+|||||||||+++++.++.. ++.|.+.- .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-----------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-----------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-----------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-----------h
Confidence 457999987 56531 134689999999 99999999999999999999999874 67776521 1
Q ss_pred HhcccEEEcccccccc-ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 819 LRLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 819 lR~~i~~VpQdp~lF~-gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
.+.++++++| +|. -++.+|+.. .+|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~---------------------------------------g~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG---------------------------------------GKSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC---------------------------------------------CCSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh---------------------------------------cccHHHHHHHHHHHH
Confidence 2467888887 454 366666531 268999999999999
Q ss_pred H--ccCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHcCCCeEEEEecCchhhhcc
Q 001980 898 V--LKNPAILLLDEA---TSALDAESE-CVLQEALERLMRGRTTVLVAHRLSTIRGV 948 (987)
Q Consensus 898 l--lr~p~ILlLDEa---TS~LD~~te-~~I~~~l~~~~~~~TvI~IaHRl~ti~~~ 948 (987)
+ +.+|+++||||| |+++|..+. ..+.+.|.+ .++|+|++||+.+....+
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 9 999999999999 999999886 478888877 589999999998876544
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.6e-17 Score=199.06 Aligned_cols=167 Identities=14% Similarity=0.119 Sum_probs=118.0
Q ss_pred ccEEEEeEEEECCCC--CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHH--------hccCCCCCceEEECCccCC
Q 001980 743 GEIELRHVDFAYPSR--PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALI--------ERFYDPTAGKVMIDGKDIR 812 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~--~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL--------~rl~~p~~G~I~idG~di~ 812 (987)
+.|++++..--+-.. ....|++|++|++++|+.++|+|||||||||+++++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 468888764333211 123689999999999999999999999999999998 44443332211
Q ss_pred CCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 813 RLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 813 ~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
++++ ..+|. ..++.+.+ ...+|+|++++.
T Consensus 702 ----------~~~~---d~i~~------------------------~ig~~d~l--------------~~~lStf~~e~~ 730 (934)
T 3thx_A 702 ----------VSIV---DCILA------------------------RVGAGDSQ--------------LKGVSTFMAEML 730 (934)
T ss_dssp ----------EECC---SEEEE------------------------ECC-----------------------CHHHHHHH
T ss_pred ----------chHH---HHHHH------------------------hcCchhhH--------------HHhHhhhHHHHH
Confidence 0000 00110 01111111 124788888888
Q ss_pred HHHHHH--ccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhH
Q 001980 893 AIARAV--LKNPAILLLDEATSALDAESECVL-QEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 967 (987)
Q Consensus 893 aLARAl--lr~p~ILlLDEaTS~LD~~te~~I-~~~l~~~~--~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~e 967 (987)
.+|+++ +.+|++|||||||+++|+.....+ +..++... .++|+|++||..+....+|++..+.+|++...+++++
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 888888 999999999999999999887777 55555543 3899999999998888899999999999998887776
Q ss_pred H
Q 001980 968 L 968 (987)
Q Consensus 968 L 968 (987)
+
T Consensus 811 l 811 (934)
T 3thx_A 811 L 811 (934)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-17 Score=172.81 Aligned_cols=148 Identities=17% Similarity=0.195 Sum_probs=104.1
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCC-------CCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHh
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYDP-------TAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI 841 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-------~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL 841 (987)
-|++||.++|+||||||||||+++|.+.+.+ ..|.|++++.+.. . ++++++++|+..++..|+.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--R----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--C----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--C----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999997665 4558889887531 1 2457777888877777899998
Q ss_pred ccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc-------CCCEEEEeCCCCCC
Q 001980 842 AYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK-------NPAILLLDEATSAL 914 (987)
Q Consensus 842 ~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr-------~p~ILlLDEaTS~L 914 (987)
.+.... +. ..|++++..+++++. +|++|+|||||+.+
T Consensus 95 ~~~~~~-~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l 138 (231)
T 4a74_A 95 YVARAF-NS-----------------------------------NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 138 (231)
T ss_dssp EEEECC-SH-----------------------------------HHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHH
T ss_pred EEEecC-Ch-----------------------------------HHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHh
Confidence 754321 11 123333444444444 89999999999999
Q ss_pred CHH-------HH-----HHHHHHHHHHc--CCCeEEEEecCc----hhhhc-cCEEEEEeCCE
Q 001980 915 DAE-------SE-----CVLQEALERLM--RGRTTVLVAHRL----STIRG-VDCIGVVQDGR 958 (987)
Q Consensus 915 D~~-------te-----~~I~~~l~~~~--~~~TvI~IaHRl----~ti~~-~D~Iivl~~G~ 958 (987)
|++ .+ ..+.+.|.+.. .++|||+|+|.. ..+.. +|++++|++|+
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 139 RSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 984 22 24555555543 389999999944 44655 79999998753
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-17 Score=180.34 Aligned_cols=163 Identities=28% Similarity=0.302 Sum_probs=111.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC----HHHH--hcccEEEcccccccc-ccHHHHhccC
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN----LKSL--RLKIGLVQQEPALFA-ASIFDNIAYG 844 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----l~~l--R~~i~~VpQdp~lF~-gTIreNL~~~ 844 (987)
+|+.++|||+|||||||+++.|.|++.|++|+|.++|.|+.... +..+ |..+++|+|++.++. .|+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999997654 2333 467999999998765 4788888532
Q ss_pred CCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHH
Q 001980 845 KEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA--ILLLDEATSALDAESECVL 922 (987)
Q Consensus 845 ~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~--ILlLDEaTS~LD~~te~~I 922 (987)
. ..+.+..+-..++..+.. ...++..++||.+||||+..+|+ +|+|| |+++.| +
T Consensus 181 ~-------------~~~~d~~llDt~G~~~~~----~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~ 236 (304)
T 1rj9_A 181 K-------------ARGYDLLFVDTAGRLHTK----HNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------G 236 (304)
T ss_dssp H-------------HHTCSEEEECCCCCCTTC----HHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------H
T ss_pred H-------------hCCCCEEEecCCCCCCch----HHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------H
Confidence 1 111111111122222211 12256677999999999999999 55666 444443 3
Q ss_pred HHHHHHHc--CCCeEEEEecCchhhhcc----------CEEEEEeCCE
Q 001980 923 QEALERLM--RGRTTVLVAHRLSTIRGV----------DCIGVVQDGR 958 (987)
Q Consensus 923 ~~~l~~~~--~~~TvI~IaHRl~ti~~~----------D~Iivl~~G~ 958 (987)
.+.+++.. .+.|+|++||...+...- -.|..+..|+
T Consensus 237 ~~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 237 LEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp HHHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred HHHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 33333332 278999999976543221 3566666665
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-17 Score=186.38 Aligned_cols=146 Identities=21% Similarity=0.220 Sum_probs=107.4
Q ss_pred EeEEEECCCCCCccceeeeeE-------EEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-CceEEECCccCCCCCHHHH
Q 001980 748 RHVDFAYPSRPDVVVFKDFNL-------RIRAGQSQALVGASGSGKSSVIALIERFYDPT-AGKVMIDGKDIRRLNLKSL 819 (987)
Q Consensus 748 ~~vsf~Y~~~~~~~vL~~vsl-------~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~-~G~I~idG~di~~i~l~~l 819 (987)
.+++++|... ..+.|+++.+ .+.+|+.++|+|||||||||++++|.|+++|+ +|.|...+.++. +. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hh---h
Confidence 5788888543 3456777776 78899999999999999999999999999987 566655443332 22 2
Q ss_pred hcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 820 RLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 820 R~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
+...++++|.+.-... ++-.+ +|||||.
T Consensus 167 ~~~~~~v~q~~~~~~~------------------------------------------------~~~~~----~La~aL~ 194 (356)
T 3jvv_A 167 ESKKCLVNQREVHRDT------------------------------------------------LGFSE----ALRSALR 194 (356)
T ss_dssp CCSSSEEEEEEBTTTB------------------------------------------------SCHHH----HHHHHTT
T ss_pred hccccceeeeeecccc------------------------------------------------CCHHH----HHHHHhh
Confidence 3445666665432110 01111 9999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeC
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 956 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~ 956 (987)
.+|++|++|||| |.++...+.++ ...|+|||+++|+.+.+..+||+++|..
T Consensus 195 ~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~ 245 (356)
T 3jvv_A 195 EDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFP 245 (356)
T ss_dssp SCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSC
T ss_pred hCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcC
Confidence 999999999999 77776555544 3358999999999999988899887744
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-18 Score=177.85 Aligned_cols=170 Identities=16% Similarity=0.240 Sum_probs=106.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccC-----CCCCceEEE-------CCccC-
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFY-----DPTAGKVMI-------DGKDI- 811 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~-----~p~~G~I~i-------dG~di- 811 (987)
|+++|++|+|. .++|++ |.+++|++++|+|++|||||||++.|.|.. .|+.|.+.+ ++..+
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999994 247888 889999999999999999999999999998 788887654 22222
Q ss_pred --CCCC--------HHHHhcccEEEccccccccc-cHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCC
Q 001980 812 --RRLN--------LKSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGER 880 (987)
Q Consensus 812 --~~i~--------l~~lR~~i~~VpQdp~lF~g-TIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~ 880 (987)
.... .+.+|+.++.+.|++..+++ ++..++..+.. ..++++.+.++..++... .++..
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~~~~~~~~~----------~v~nK 146 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVDSNIAVL----------VLLTK 146 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHHTTCCEE----------EEEEC
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-hhHHHHHHHHHHcCCCeE----------EEEec
Confidence 2221 13456666666665433332 33344432211 112344444433322111 12334
Q ss_pred CCCCChhHHHH-HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC
Q 001980 881 GVQLSGGQKQR-IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR 931 (987)
Q Consensus 881 G~~LSgGQrQr-laLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~ 931 (987)
-..+|+||||| +..+|+++++|+++++|||||++|......+.+.|.+..+
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 44699999999 8999999999999999999999999999999999988653
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-17 Score=185.78 Aligned_cols=162 Identities=17% Similarity=0.191 Sum_probs=112.3
Q ss_pred ceeee-eEEEeCCcEEEEEcCCCccHHHHHHHHHcCC--CCCc----cE-EEECCEeCCCCCHHHHhcceEEEcCCCCCc
Q 001980 117 IFRDF-SIFFPAGKTVAVVGGSGSGKSTVVSLIERFY--DPNA----GH-VLLDNVDIKTLQLRWLRDQIGLVNQEPALF 188 (987)
Q Consensus 117 ~l~~i-~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~--~~~~----G~-i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~ 188 (987)
.|+++ ++.+++|++++|+||||||||||++.+++.+ +|+. |+ |++++.+.. .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 56665 6899999999999999999999999999998 6666 68 899986641 145688999999888
Q ss_pred hhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc-------cCCCEEE
Q 001980 189 ATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML-------KNPKILL 261 (987)
Q Consensus 189 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~-------~~~~ill 261 (987)
..++.+||.+.... . |++|+|++.++++++ .+|+++|
T Consensus 193 ~~~v~~ni~~~~~~-~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 193 PDEVLKHIYVARAF-N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HHHHGGGEEEEECC-S-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HHHHhhCEEEEecC-C-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 88999999876431 1 234555555555555 6899999
Q ss_pred EeCCCCCCChHH------------HHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecCh
Q 001980 262 LDEATSALDAGS------------ESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTH 320 (987)
Q Consensus 262 lDEpts~LD~~~------------~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~ 320 (987)
+||||+.+|+.. ...+.+.|.++. .+.|+|+++|....... ++...+...|++++.+.+
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCS
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCc
Confidence 999999999862 234445555553 38999999998765443 234556666776655543
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-18 Score=187.98 Aligned_cols=162 Identities=15% Similarity=0.076 Sum_probs=80.4
Q ss_pred EeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC-CCCCccEEEECCEeCCCCCHHHHhcceEEE
Q 001980 103 KNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF-YDPNAGHVLLDNVDIKTLQLRWLRDQIGLV 181 (987)
Q Consensus 103 ~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 181 (987)
+|++++|+. ..++++++|+| +|+|+||+|||||++.|.|. ..|++| +.++|.++... .. .+.++|+
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t--~~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERT--VQ-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCc--ce-EeeEEEE
Confidence 478889974 34899999988 99999999999999999998 889999 88888776431 11 3468999
Q ss_pred cCCCCCc-hhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 001980 182 NQEPALF-ATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKIL 260 (987)
Q Consensus 182 ~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~il 260 (987)
+|++.++ .-|+.|+..++......++....... +.+... ....++|||||||+.+|||+. ++
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~~-----------~~~~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQFE-----------RYLHDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTHHHH--HHHHHH-----------HHHHHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHHH-----------HHHHHhCHHhhhhhhhhhhhh----ee
Confidence 9987665 44888888776431110111111110 111111 122369999999999999986 99
Q ss_pred EEeCCCCC-CChHHHHHHHHHHHhhhC--CCeEEEEcCCCC
Q 001980 261 LLDEATSA-LDAGSESIVQEALDRLMV--GRTTVVVAHRLS 298 (987)
Q Consensus 261 llDEpts~-LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~ 298 (987)
++||||++ ||+... +.++++.. +.++|+.+||+.
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 99999985 999874 33444432 567888889874
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.65 E-value=9.8e-17 Score=175.44 Aligned_cols=151 Identities=24% Similarity=0.235 Sum_probs=105.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHHH--hcceEEEcCCCCCchh-cHHHHHhcC
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ----LRWL--RDQIGLVNQEPALFAT-TILENILYG 199 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~--~~~i~~v~Q~~~l~~~-tv~eni~~~ 199 (987)
+|++++|+||||||||||++.|+|+++|++|+|.++|.|+.... ...+ +..++|++|++.+++. |+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999986543 1222 4579999999988865 899998643
Q ss_pred CCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHH
Q 001980 200 KPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 279 (987)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~ 279 (987)
.. .+....+-..+ |... .....++..++||++||||+..+|+.++| .||+.+...+.+
T Consensus 181 ~~-------------~~~d~~llDt~-G~~~---~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~ 238 (304)
T 1rj9_A 181 KA-------------RGYDLLFVDTA-GRLH---TKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLE 238 (304)
T ss_dssp HH-------------HTCSEEEECCC-CCCT---TCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHH
T ss_pred Hh-------------CCCCEEEecCC-CCCC---chHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHH
Confidence 10 00000000011 1110 01112466779999999999999994444 455554445555
Q ss_pred HHHhhh--CCCeEEEEcCCCCc
Q 001980 280 ALDRLM--VGRTTVVVAHRLST 299 (987)
Q Consensus 280 ~l~~~~--~~~tvi~vtH~~~~ 299 (987)
.++.+. .+.|+|++||....
T Consensus 239 ~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 239 QAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHcCCcEEEEECCccc
Confidence 555543 28899999998554
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-18 Score=207.14 Aligned_cols=188 Identities=18% Similarity=0.227 Sum_probs=118.7
Q ss_pred cEEEEeEEEECCCCCCccceeee----------eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCEeCC
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDF----------SIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-NAGHVLLDNVDIK 167 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i----------~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-~~G~i~~~g~~~~ 167 (987)
.++++|+++.|+.. ..++|+.+ +++++. ++|+||||||||||+++|+|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 47899999999632 12344433 366665 999999999999999999999988 8999999999863
Q ss_pred CC---CHHHHhcceEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHH
Q 001980 168 TL---QLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ 243 (987)
Q Consensus 168 ~~---~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq 243 (987)
.. ....+++.++|++|++.+++. ||++||.+.. ..+..... .+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------------~~~~~~~~-----------~~s--- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------------NAIAGEGM-----------GIS--- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------------HHHHCSSS-----------CCC---
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------------HHhcCCcc-----------ccc---
Confidence 21 234567899999999988765 9999986421 00111111 111
Q ss_pred HHHHHHHHHhccCCCEEEEeCC------CCCCChHHHHHHHHHHHhhh-C--CCeEEEEcCCCCccc-------------
Q 001980 244 KQRIAIARAMLKNPKILLLDEA------TSALDAGSESIVQEALDRLM-V--GRTTVVVAHRLSTIR------------- 301 (987)
Q Consensus 244 kqRialARal~~~~~illlDEp------ts~LD~~~~~~i~~~l~~~~-~--~~tvi~vtH~~~~~~------------- 301 (987)
++++.++.+....|+++|+||| |++||+..+..+.+.+.++. + +.+++++||+++...
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 2334445555668999999999 99999999999999999863 2 578889999987431
Q ss_pred cCCEEEEEeCCEEEEecChHH
Q 001980 302 NVDTVAVIQQGQVVETGTHEE 322 (987)
Q Consensus 302 ~~d~i~~l~~G~i~~~g~~~~ 322 (987)
....|+|+.++.++..|+.++
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~ 234 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDK 234 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTC
T ss_pred CCceEEEecchhhcCcccHHH
Confidence 125688888887777776443
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-17 Score=190.49 Aligned_cols=166 Identities=13% Similarity=0.163 Sum_probs=102.2
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
+.|+++|++++|.. .++++|+||+| +|||+||||||||+++|+|...|..| .+|.++...+ ...+..
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 46999999999953 35999999998 99999999999999999999876555 2444433211 112467
Q ss_pred cEEEccccccc-cccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 001980 823 IGLVQQEPALF-AASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901 (987)
Q Consensus 823 i~~VpQdp~lF-~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~ 901 (987)
+++++|++.++ ..||.||+.++.. ...++.|+.+ .+++.. .++.+.+||++||||++++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~-~~~~~~~~~i-----~~~i~~--------------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDA-VDNSNCWQPV-----IDYIDS--------------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC------------CHHH-----HHHHHH--------------HHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhh-ccchhhHHHH-----HHHHHH--------------HHHHHHHHHHHHHHHhccC
Confidence 89999998776 6799999876643 2222333322 122321 2556777899999999999
Q ss_pred CC---EEEEeCCC-CCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh
Q 001980 902 PA---ILLLDEAT-SALDAESECVLQEALERLMRGRTTVLVAHRLSTI 945 (987)
Q Consensus 902 p~---ILlLDEaT-S~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti 945 (987)
|+ +|++|||| +++|+... .+.+.| ..+.++|.|.|+.+++
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~-~~lk~L---~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDI-EFMKRL---HEKVNIIPLIAKADTL 180 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHH-HHHHHH---TTTSEEEEEEESTTSS
T ss_pred CCeeEEEEEecCcccCCCHHHH-HHHHHH---hccCcEEEEEEcccCc
Confidence 99 99999999 69998763 333333 4578999999988764
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-18 Score=209.74 Aligned_cols=190 Identities=17% Similarity=0.234 Sum_probs=121.9
Q ss_pred cEEEEeEEEECCCCCCccceeee----------eEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-CCceEEECCccCC
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDF----------NLRIRAGQSQALVGASGSGKSSVIALIERFYDP-TAGKVMIDGKDIR 812 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~v----------sl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-~~G~I~idG~di~ 812 (987)
.++++|+++.|+.. ..++|+.+ +++++. +||||+||||||||+++|.|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 48899999999532 12455544 366665 999999999999999999999988 7999999999963
Q ss_pred C---CCHHHHhcccEEEcccccccc-ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 001980 813 R---LNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 888 (987)
Q Consensus 813 ~---i~l~~lR~~i~~VpQdp~lF~-gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQ 888 (987)
. -....+|.++++++|++.+++ .||++|+..+ .... ..... .+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~------------~~~~------~~~~~-----------~~s--- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA------------QNAI------AGEGM-----------GIS--- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH------------HHHH------HCSSS-----------CCC---
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHH------------HHHh------cCCcc-----------ccc---
Confidence 2 124568899999999998775 5899998532 1110 00011 112
Q ss_pred HHHHHHHHHHccCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHcC---CCeEEEEecCchhh--------hc----
Q 001980 889 KQRIAIARAVLKNPAILLLDEA------TSALDAESECVLQEALERLMR---GRTTVLVAHRLSTI--------RG---- 947 (987)
Q Consensus 889 rQrlaLARAllr~p~ILlLDEa------TS~LD~~te~~I~~~l~~~~~---~~TvI~IaHRl~ti--------~~---- 947 (987)
++++.++++....|+++++||| |+++|+.+.+.+.+.++++.+ +.++++++|+++.. ..
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 2334445555668999999999 999999999999999998642 45677889987632 22
Q ss_pred -cCEEEEEeCCEEEEecChhHHh
Q 001980 948 -VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 948 -~D~Iivl~~G~ive~Gt~~eLl 969 (987)
...|+|+.++.+++.|++++++
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTCCC
T ss_pred CCceEEEecchhhcCcccHHHHH
Confidence 3569999999999888876544
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=9.1e-19 Score=198.28 Aligned_cols=162 Identities=17% Similarity=0.138 Sum_probs=110.6
Q ss_pred eeeeeEEEeC--CcEEEEEcCCCccHHHHHHHHHcCCCCCc----cEEEEC----CEeCCCCCHHHHhcceEEEcCCCCC
Q 001980 118 FRDFSIFFPA--GKTVAVVGGSGSGKSTVVSLIERFYDPNA----GHVLLD----NVDIKTLQLRWLRDQIGLVNQEPAL 187 (987)
Q Consensus 118 l~~i~l~i~~--G~~~~ivG~sGsGKSTLl~~l~g~~~~~~----G~i~~~----g~~~~~~~~~~~~~~i~~v~Q~~~l 187 (987)
.+.|++++++ |++++|+||||||||||+++|+|+++|++ |++.++ |.++ .++..++ .+|+|++|++.+
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~~ 235 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYID 235 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHHH
Confidence 4679999999 99999999999999999999999999999 998873 5554 4444444 459999999888
Q ss_pred chhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc-cCCCEEEEeC--
Q 001980 188 FATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML-KNPKILLLDE-- 264 (987)
Q Consensus 188 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~-~~~~illlDE-- 264 (987)
|..|++|||.++.......... .+|+|++||..+++++. .+|++++|||
T Consensus 236 ~~~t~~~nl~~~~~~~~~~~~~----------------------------~~~~~~~~~~~i~~~~~~~~~~lllLdE~~ 287 (365)
T 1lw7_A 236 YAVRHSHKIAFIDTDFITTQAF----------------------------CIQYEGKAHPFLDSMIKEYPFDVTILLKNN 287 (365)
T ss_dssp HHHHHCSSEEEESSCHHHHHHH----------------------------HHHHHSCCCHHHHHHHHHSCCSEEEEEECC
T ss_pred HHHhccCCEEEEeCCchHHHHH----------------------------HHHHcCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 8899999998875321111110 13445566666666664 4777777777
Q ss_pred -CC------CCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccccCCEEEEE
Q 001980 265 -AT------SALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVI 309 (987)
Q Consensus 265 -pt------s~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~~l 309 (987)
|+ +++|+..+..+.+.+.++.+ +.++|+++|.-..-+.+|++.++
T Consensus 288 ~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i 341 (365)
T 1lw7_A 288 TEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVI 341 (365)
T ss_dssp CC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 54 46777777777777766533 67777777653222224544444
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-18 Score=182.23 Aligned_cols=140 Identities=17% Similarity=0.187 Sum_probs=105.7
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCch---hcHHHHHhcCC-
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA---TTILENILYGK- 200 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~---~tv~eni~~~~- 200 (987)
.++|++++|+||||||||||+++|+|++.| +++|++|++.+++ -|+++|+.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999998864 4899999998763 27888776532
Q ss_pred -CC-CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHH----HHHHHHHHHhccCCCEEEEeCCCCC------
Q 001980 201 -PE-ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ----KQRIAIARAMLKNPKILLLDEATSA------ 268 (987)
Q Consensus 201 -~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq----kqRialARal~~~~~illlDEpts~------ 268 (987)
+. ...+++.+.++..+ ....+...+..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALL-----------RGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHH-----------TTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHH-----------cCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 21 12334444433221 1122333466788886 5799999999999999999999999
Q ss_pred -CChHHHHHHHHHHHhh--hCCCeEEEEcCCC
Q 001980 269 -LDAGSESIVQEALDRL--MVGRTTVVVAHRL 297 (987)
Q Consensus 269 -LD~~~~~~i~~~l~~~--~~~~tvi~vtH~~ 297 (987)
||+..+..+.+.+.+. .+|+|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999899888765 2589999999974
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.1e-17 Score=181.41 Aligned_cols=147 Identities=22% Similarity=0.269 Sum_probs=103.4
Q ss_pred EeEEEECCCCCCccceeeeeE-------EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCC-ccEEEECCEeCCCCCHHHH
Q 001980 103 KNVTFSYPSRPDVIIFRDFSI-------FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN-AGHVLLDNVDIKTLQLRWL 174 (987)
Q Consensus 103 ~~~~~~y~~~~~~~~l~~i~l-------~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~ 174 (987)
.+++++|... ..+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+ +|.|...+.++ ++. .
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 4677777433 3446677766 67899999999999999999999999999997 56665433222 111 1
Q ss_pred hcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 175 RDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 175 ~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+...++++|.+.-.. . ++-.+ +|||||.
T Consensus 167 ~~~~~~v~q~~~~~~------------~------------------------------------~~~~~----~La~aL~ 194 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD------------T------------------------------------LGFSE----ALRSALR 194 (356)
T ss_dssp CCSSSEEEEEEBTTT------------B------------------------------------SCHHH----HHHHHTT
T ss_pred hccccceeeeeeccc------------c------------------------------------CCHHH----HHHHHhh
Confidence 223445555431110 0 11111 9999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCC
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQG 312 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G 312 (987)
.+|+++++|||| |+++.+.+.+. ...|+|+++++|+.+.+..+||++.|..|
T Consensus 195 ~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 195 EDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999 77775555444 23599999999999998778999888554
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-20 Score=209.54 Aligned_cols=222 Identities=12% Similarity=0.007 Sum_probs=136.4
Q ss_pred HHHHHHHHc-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCccE-
Q 001980 23 WYAGVFIRN-GVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNI- 100 (987)
Q Consensus 23 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i- 100 (987)
++|++.+.. +.++.+.+..++.++.....+ .+......+..+..+..|+++++ +|..................+
T Consensus 53 ~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~it 128 (361)
T 2gza_A 53 RASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRRT 128 (361)
T ss_dssp ETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCCC
T ss_pred ECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCCC
Confidence 345544454 678888877665544432222 11111111222233456777666 222111000000000011234
Q ss_pred --------EEEeEEEE---CCCCCCccce---------eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE
Q 001980 101 --------EFKNVTFS---YPSRPDVIIF---------RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL 160 (987)
Q Consensus 101 --------~~~~~~~~---y~~~~~~~~l---------~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~ 160 (987)
+|++++|+ |+.. +.++| +++||.+++|+.++|+||||||||||+++|+|+++|++|.|.
T Consensus 129 l~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ 207 (361)
T 2gza_A 129 LEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLIT 207 (361)
T ss_dssp HHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEE
T ss_pred HHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEE
Confidence 78899998 8531 12355 999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhcceEEEc-CCCCC---chhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCC
Q 001980 161 LDNVDIKTLQLRWLRDQIGLVN-QEPAL---FATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERG 236 (987)
Q Consensus 161 ~~g~~~~~~~~~~~~~~i~~v~-Q~~~l---~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g 236 (987)
++|. .++.....++.++|++ |++.+ +..|+++||..+.....+..+...++...+.+++..+|.|.+|.+++-.
T Consensus 208 ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H 285 (361)
T 2gza_A 208 IEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCH 285 (361)
T ss_dssp EESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEE
T ss_pred ECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEEC
Confidence 9974 3444444567899999 88875 6679999999864422211111111223345677777889999888877
Q ss_pred CCCChHHHHHHHHHH
Q 001980 237 VQLSGGQKQRIAIAR 251 (987)
Q Consensus 237 ~~LSgGqkqRialAR 251 (987)
.+-..+..+|+....
T Consensus 286 ~~~~~~~~~Rl~~l~ 300 (361)
T 2gza_A 286 AGSCELTFERLALMV 300 (361)
T ss_dssp CSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 777899999998775
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.8e-18 Score=185.55 Aligned_cols=121 Identities=13% Similarity=0.081 Sum_probs=93.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCC------
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK------ 845 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~------ 845 (987)
++.+|||+|+||||||||+++|.+++.+. | . . ++.+.+|+||+++|++++++|+.++.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 46789999999999999999999999864 2 1 1 45566779999999999999986542
Q ss_pred -----CCCCHHHHHHHHHHcCchhhHhhCCCcCCCc------cCCCCCCCChhHHHHHHHH--HHHccCCCEEEEeCCCC
Q 001980 846 -----EGATEAEVVEAARAANVHGFVSALPNAYKTP------VGERGVQLSGGQKQRIAIA--RAVLKNPAILLLDEATS 912 (987)
Q Consensus 846 -----~~~sd~ei~~al~~a~l~~~i~~lp~gldt~------vge~G~~LSgGQrQrlaLA--RAllr~p~ILlLDEaTS 912 (987)
|++.| ...+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|||+||+|+
T Consensus 94 ~~~g~p~a~d--------~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~ 163 (290)
T 1odf_A 94 QGRGLPGTHD--------MKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFL 163 (290)
T ss_dssp SSSCSTTSBC--------HHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESST
T ss_pred hhccCcchhH--------HHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccc
Confidence 33222 234567788889998764 3456789999999999998 666 999999999999
Q ss_pred CCCHHH
Q 001980 913 ALDAES 918 (987)
Q Consensus 913 ~LD~~t 918 (987)
++|+++
T Consensus 164 ~ld~~~ 169 (290)
T 1odf_A 164 GFNPIL 169 (290)
T ss_dssp TCCCCC
T ss_pred cCCccc
Confidence 999865
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=150.83 Aligned_cols=78 Identities=23% Similarity=0.275 Sum_probs=71.0
Q ss_pred CCCChhHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEE--e
Q 001980 882 VQLSGGQKQRIAIARAVL----KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVV--Q 955 (987)
Q Consensus 882 ~~LSgGQrQrlaLARAll----r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl--~ 955 (987)
..||||||||++|||+++ ++|+++||||||++||+.+...+.+.|++..++.++|+|+||..+...||+|+++ +
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~~ 142 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMR 142 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEec
Confidence 469999999999999996 5679999999999999999999999999988888999999999999999999855 5
Q ss_pred CCEE
Q 001980 956 DGRI 959 (987)
Q Consensus 956 ~G~i 959 (987)
+|..
T Consensus 143 ~g~s 146 (173)
T 3kta_B 143 DGVS 146 (173)
T ss_dssp TTEE
T ss_pred CCEE
Confidence 7754
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-19 Score=185.11 Aligned_cols=158 Identities=16% Similarity=0.215 Sum_probs=114.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC-------------CCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcH
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYD-------------PNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTI 192 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~-------------~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv 192 (987)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++.+ +|+++++.+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999886 78887 588888888888888765 79999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH-HhccCCCEEEEeCCCCCCCh
Q 001980 193 LENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR-AMLKNPKILLLDEATSALDA 271 (987)
Q Consensus 193 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR-al~~~~~illlDEpts~LD~ 271 (987)
.+|+ +|. +.+++.++++..... .+...|.|+++.... ++ .|| +++.+|++++|||+|+++|.
T Consensus 77 ~~n~-~g~---~~~~i~~~~~~~~~~-~~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 77 SGNL-YGT---SKEAVRAVQAMNRIC-VLDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp TTEE-EEE---EHHHHHHHHHTTCEE-EEECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred cCcc-CCC---CHHHHHHHHHcCCcE-EEECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 9998 664 345566555431100 011123344443221 12 567 78999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeC
Q 001980 272 GSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQ 311 (987)
Q Consensus 272 ~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~ 311 (987)
++++.+.+.|.+..++ +.++| +. ..+|+|+++++
T Consensus 140 ~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 140 ETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp SCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 9999999998776543 24456 22 67899988764
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-17 Score=180.14 Aligned_cols=163 Identities=15% Similarity=0.175 Sum_probs=79.6
Q ss_pred EeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcc-CCCCCceEEECCccCCCCCHHHHhcccEEE
Q 001980 748 RHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERF-YDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 826 (987)
Q Consensus 748 ~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl-~~p~~G~I~idG~di~~i~l~~lR~~i~~V 826 (987)
+|++++|.. ..++++++|+| +|+|+||+|||||++.|++. ..|.+| |.++|.++.. .. . ++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 478888853 35999999998 99999999999999999998 888999 9999988754 11 1 4668999
Q ss_pred ccccccc-cccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEE
Q 001980 827 QQEPALF-AASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAIL 905 (987)
Q Consensus 827 pQdp~lF-~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~IL 905 (987)
+|++.++ .-|+.||..++... ...+-++. +.+.+.. -++..+ .++|||||||+++|||+. +|
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~-~~~e~~~~-----l~~~l~~---~~~~~~----~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAI-NCRDCFKT-----IISYIDE---QFERYL----HDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC------------CTT-----HHHHHHH---HHHHHH----HHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhhc-CcHHHHHH-----HHHHHHH---HHHHHH----HHhCHHhhhhhhhhhhhh----ee
Confidence 9987554 56888887654321 11111110 0011110 011112 258999999999999986 99
Q ss_pred EEeCCCCC-CCHHHHHHHHHHHHHHcC--CCeEEEEecCchh
Q 001980 906 LLDEATSA-LDAESECVLQEALERLMR--GRTTVLVAHRLST 944 (987)
Q Consensus 906 lLDEaTS~-LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~t 944 (987)
++||||++ ||+... +.+++..+ +.++|+..|++.+
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 99999985 999874 33444333 4577777898753
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-17 Score=172.75 Aligned_cols=168 Identities=14% Similarity=0.160 Sum_probs=98.3
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC-----CCCccEEEEC-------CEeCC
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY-----DPNAGHVLLD-------NVDIK 167 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-----~~~~G~i~~~-------g~~~~ 167 (987)
|+++|++|.|+. +++++ |++++|..++|+|+||||||||++.|+|.. .|+.|.+... +..+.
T Consensus 4 l~~~~~~~~~~~----~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMSA----PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEEE----SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheeec----CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 789999999962 36787 889999999999999999999999999998 7888877542 22221
Q ss_pred C---CC--------HHHHhcceEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcc-cccC
Q 001980 168 T---LQ--------LRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYST-QVGE 234 (987)
Q Consensus 168 ~---~~--------~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~~~ 234 (987)
+ .. .+.++..++++.|+....++ .+..++..+ .+... .+. .+.+... +... .++.
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~---~~~~~-~~~------~~~~~~~--~~~~~~v~n 145 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP---LKDLD-QQM------IEWAVDS--NIAVLVLLT 145 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC---CCHHH-HHH------HHHHHHT--TCCEEEEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC---CchhH-HHH------HHHHHHc--CCCeEEEEe
Confidence 1 10 01222233333333222221 221222111 11111 111 1122221 3333 2466
Q ss_pred CCCCCChHHHHH-HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 001980 235 RGVQLSGGQKQR-IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM 285 (987)
Q Consensus 235 ~g~~LSgGqkqR-ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~ 285 (987)
+...+|+||||| +..+|+++.+|+++++|||||++|....+.+++.|.++.
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 677899999999 899999999999999999999999999999999998764
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.1e-17 Score=185.50 Aligned_cols=166 Identities=16% Similarity=0.162 Sum_probs=99.5
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
+.|.++|++++|+. ..+++++||+| +|+|+||||||||++.|+|...|..| .+|.++... ....+..
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeee
Confidence 35889999999974 34899999998 99999999999999999999886655 133222111 1111346
Q ss_pred eEEEcCCCCCc-hhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 178 IGLVNQEPALF-ATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 178 i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
++|++|++.++ ..||.||+.++..... ...+.. +.+++.. .++.+++||++||||++++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~-~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAVDN-SNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhhccc-hhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccC
Confidence 89999998876 4599999988754211 111111 1122221 3455677899999999999
Q ss_pred CC---EEEEeCCC-CCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcc
Q 001980 257 PK---ILLLDEAT-SALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300 (987)
Q Consensus 257 ~~---illlDEpt-s~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~ 300 (987)
|+ ++++|||| ++||+..... ++.+..+.++|+|.|..+.+
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~~~----lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDIEF----MKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHHHH----HHHHTTTSEEEEEEESTTSS
T ss_pred CCeeEEEEEecCcccCCCHHHHHH----HHHHhccCcEEEEEEcccCc
Confidence 99 99999999 6999876433 33344578899999887654
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-16 Score=194.50 Aligned_cols=159 Identities=15% Similarity=0.160 Sum_probs=103.1
Q ss_pred cEEEEeEEEECC----CCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH
Q 001980 99 NIEFKNVTFSYP----SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL 174 (987)
Q Consensus 99 ~i~~~~~~~~y~----~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 174 (987)
.+.+++...-.= ...+..+++|+||++++|++++|+||||||||||+|++.+.....
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a------------------- 700 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA------------------- 700 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-------------------
Confidence 577776543220 112356899999999999999999999999999999987532110
Q ss_pred hcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 175 RDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 175 ~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
+.-.++|++..-+ .+.+++. . .+ |....+..+..++|+|++|+..++++ +
T Consensus 701 -q~g~~vpa~~~~i--~~~d~i~-~-----------------------~i--g~~d~l~~~~stfs~em~~~~~il~~-a 750 (918)
T 3thx_B 701 -QIGSYVPAEEATI--GIVDGIF-T-----------------------RM--GAADNIYKGRSTFMEELTDTAEIIRK-A 750 (918)
T ss_dssp -HHTCCBSSSEEEE--ECCSEEE-E-----------------------EC------------CCHHHHHHHHHHHHHH-C
T ss_pred -hcCccccchhhhh--hHHHHHH-H-----------------------hC--ChHHHHHHhHHHhhHHHHHHHHHHHh-c
Confidence 0011222221000 0000000 0 00 11111122235789999999999999 8
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHH-HHHHhhh--CCCeEEEEcCCCCccccCCEE
Q 001980 255 KNPKILLLDEATSALDAGSESIVQ-EALDRLM--VGRTTVVVAHRLSTIRNVDTV 306 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~-~~l~~~~--~~~tvi~vtH~~~~~~~~d~i 306 (987)
.+|+++||||||+|||+.....+. ..++.+. .|.|+|++||+++....+|+.
T Consensus 751 ~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 751 TSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 999999999999999999877776 5555553 489999999998887666543
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-15 Score=150.00 Aligned_cols=80 Identities=24% Similarity=0.302 Sum_probs=71.1
Q ss_pred CCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEE-
Q 001980 235 RGVQLSGGQKQRIAIARAML----KNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVI- 309 (987)
Q Consensus 235 ~g~~LSgGqkqRialARal~----~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l- 309 (987)
....||||||||++|||+++ ++|+++||||||++||+.++..+.+.|+++.++.++|+|||+...+..||+++.+
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~ 140 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVS 140 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEE
Confidence 34679999999999999996 5679999999999999999999999999887778999999998888889999855
Q ss_pred -eCCEE
Q 001980 310 -QQGQV 314 (987)
Q Consensus 310 -~~G~i 314 (987)
++|..
T Consensus 141 ~~~g~s 146 (173)
T 3kta_B 141 MRDGVS 146 (173)
T ss_dssp EETTEE
T ss_pred ecCCEE
Confidence 57753
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.4e-16 Score=164.55 Aligned_cols=165 Identities=12% Similarity=0.053 Sum_probs=110.5
Q ss_pred ccceeeeeE-EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhc---ceEEEcCCCCCchh
Q 001980 115 VIIFRDFSI-FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD---QIGLVNQEPALFAT 190 (987)
Q Consensus 115 ~~~l~~i~l-~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~---~i~~v~Q~~~l~~~ 190 (987)
.+.|+++.. .+++|++++|+||||||||||++.|++...+.+|.+.+.+.+. +...++. .+++.+|+..
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~---- 81 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYI---- 81 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGB----
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHh----
Confidence 346888887 8999999999999999999999999998888888877654332 1222111 2233222210
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCC
Q 001980 191 TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK--ILLLDEATSA 268 (987)
Q Consensus 191 tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~--illlDEpts~ 268 (987)
.+++.+-... . ... + ...+. ...|.+|.++...+.+...+|+ ++++||||+.
T Consensus 82 --~~~~~~~~~~-~--------------~~~-----~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 82 --EKKLIIIDAL-M--------------KEK-----E-DQWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp --TTTEEEEECC-C------------------------CTTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred --hCCEEEEecc-c--------------ccc-----C-ceeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 0011100000 0 000 0 00011 1349999998888888778999 9999999988
Q ss_pred C--ChHHHHHHHHHHHhhh--CCCeEEEEcCCC--------Ccccc-CCEEEEEeCC
Q 001980 269 L--DAGSESIVQEALDRLM--VGRTTVVVAHRL--------STIRN-VDTVAVIQQG 312 (987)
Q Consensus 269 L--D~~~~~~i~~~l~~~~--~~~tvi~vtH~~--------~~~~~-~d~i~~l~~G 312 (987)
+ |+.....+.+.|+++. .+.|+|++||.. ..+.. ||+|++|++.
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 8 9988888888888774 488999999998 44555 8999999764
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-15 Score=161.35 Aligned_cols=164 Identities=13% Similarity=0.023 Sum_probs=114.2
Q ss_pred ccceeeeeE-EEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhc---ccEEEccccccccc
Q 001980 760 VVVFKDFNL-RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL---KIGLVQQEPALFAA 835 (987)
Q Consensus 760 ~~vL~~vsl-~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~---~i~~VpQdp~lF~g 835 (987)
.+.|+++.. .+++|+.++|+|++|||||||++.|.+...+.+|.+.+.+.+. +.+.++. .+++.+|+...
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE--- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT---
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh---
Confidence 357899988 8999999999999999999999999998888888888876554 2333332 34444443211
Q ss_pred cHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCC-CccCCCCCCCChhHHHHHHHHHHHccCCC--EEEEeCCCC
Q 001980 836 SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYK-TPVGERGVQLSGGQKQRIAIARAVLKNPA--ILLLDEATS 912 (987)
Q Consensus 836 TIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gld-t~vge~G~~LSgGQrQrlaLARAllr~p~--ILlLDEaTS 912 (987)
+++..-.. .. ..++ ..+- ...|.+|.++.+.+.+...+|+ +||+||||+
T Consensus 83 ---~~~~~~~~-~~---------------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 83 ---KKLIIIDA-LM---------------------KEKEDQWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp ---TTEEEEEC-CC-------------------------CTTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred ---CCEEEEec-cc---------------------cccCceeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 01110000 00 0000 0011 1348999998888888778999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHHc--CCCeEEEEecCc--------hhhh-ccCEEEEEeCC
Q 001980 913 AL--DAESECVLQEALERLM--RGRTTVLVAHRL--------STIR-GVDCIGVVQDG 957 (987)
Q Consensus 913 ~L--D~~te~~I~~~l~~~~--~~~TvI~IaHRl--------~ti~-~~D~Iivl~~G 957 (987)
.+ |+.....+.+.|++.. .++|+|+++|.. ..+. .||+|++|+..
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 88 9988888888888764 489999999998 3354 48999999864
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-15 Score=185.48 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=103.9
Q ss_pred ccEEEEeEEEECC------CCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH
Q 001980 743 GEIELRHVDFAYP------SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL 816 (987)
Q Consensus 743 g~I~f~~vsf~Y~------~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l 816 (987)
+.|.+++. ++| ...+..|++|+||++++|+.++|+|||||||||+++++.++.-
T Consensus 639 ~~i~i~~~--rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~------------------ 698 (918)
T 3thx_B 639 RKIVIKNG--RHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI------------------ 698 (918)
T ss_dssp CEEEEEEE--CCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH------------------
T ss_pred CcEEEEec--cchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH------------------
Confidence 45777764 343 1113469999999999999999999999999999999865321
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+.+.-+++|++..-+ .+.+++. ...++.+. +..+-..||+|++|+..++|
T Consensus 699 --~aq~g~~vpa~~~~i--~~~d~i~---------------~~ig~~d~-----------l~~~~stfs~em~~~~~il~ 748 (918)
T 3thx_B 699 --MAQIGSYVPAEEATI--GIVDGIF---------------TRMGAADN-----------IYKGRSTFMEELTDTAEIIR 748 (918)
T ss_dssp --HHHHTCCBSSSEEEE--ECCSEEE---------------EEC---------------------CCHHHHHHHHHHHHH
T ss_pred --HhhcCccccchhhhh--hHHHHHH---------------HhCChHHH-----------HHHhHHHhhHHHHHHHHHHH
Confidence 111122344433111 0001110 01111111 11222468999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHc--CCCeEEEEecCchhhhccCE
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQ-EALERLM--RGRTTVLVAHRLSTIRGVDC 950 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~-~~l~~~~--~~~TvI~IaHRl~ti~~~D~ 950 (987)
+ +.+|++|||||||+++|+.....+. ..++.+. .++|+|++||.++....+|+
T Consensus 749 ~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 749 K-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp H-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred h-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 9 8999999999999999998887776 5555542 48999999999887765544
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.1e-16 Score=161.82 Aligned_cols=143 Identities=15% Similarity=0.151 Sum_probs=105.7
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhccCCC--CCceEEECCccCCCCCHHHHhcccEEEccccccccc-cH----HHH
Q 001980 768 LRIRAGQSQALVGASGSGKSSVIALIERFYDP--TAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SI----FDN 840 (987)
Q Consensus 768 l~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p--~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~g-TI----reN 840 (987)
-+.++|+.++|+||||||||||+++|.++++| ..|.|.+++.+.+. ..+..++|+||++.+|.. ++ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 45789999999999999999999999999986 68999998877643 246789999999988864 33 455
Q ss_pred hccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 001980 841 IAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 920 (987)
Q Consensus 841 L~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~ 920 (987)
+.+... +.|-.++ -++.++.+++++||| ||+.+..
T Consensus 87 ~~~~~~-------------------------------------~yg~~~~---~v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 87 AEVFGN-------------------------------------YYGTSRE---AIEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp EEETTE-------------------------------------EEEEEHH---HHHHHHTTTCEEEEE-----CCHHHHH
T ss_pred HHHHhc-------------------------------------cCCCCHH---HHHHHHhcCCeEEEE-----ECHHHHH
Confidence 543210 0000011 134455667999999 9999999
Q ss_pred HHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhc
Q 001980 921 VLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 921 ~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
.+.+.+. +++||++++|+++.+.. |+ +.+| .++++++.+
T Consensus 122 ~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 122 QIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 9998876 57899999999998876 43 6777 678888754
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8.9e-16 Score=187.96 Aligned_cols=167 Identities=12% Similarity=0.134 Sum_probs=108.6
Q ss_pred cEEEEeEEEECCC--CCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEEECCEeCCCCCHHHHh
Q 001980 99 NIEFKNVTFSYPS--RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-NAGHVLLDNVDIKTLQLRWLR 175 (987)
Q Consensus 99 ~i~~~~~~~~y~~--~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-~~G~i~~~g~~~~~~~~~~~~ 175 (987)
.+.+++...-.-. ..+..+++|++|+ ++|++++|+||||||||||+|+|+|+..+ ..|. .+.. -+
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa-----~~ 644 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA-----QK 644 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS-----SE
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch-----hc
Confidence 4777765421100 0134589999999 99999999999999999999999997432 2221 1110 02
Q ss_pred cceEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 176 DQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
..+++++| +|.. ++.||+..+ ..++|+|+++ ++.+...+
T Consensus 645 ~~i~~~~~---i~~~~~~~d~l~~~------------------------------------~stf~~e~~~-~~~il~~a 684 (800)
T 1wb9_A 645 VEIGPIDR---IFTRVGAADDLASG------------------------------------RSTFMVEMTE-TANILHNA 684 (800)
T ss_dssp EEECCCCE---EEEEEC-----------------------------------------------CHHHHHH-HHHHHHHC
T ss_pred ccceeHHH---HHhhCCHHHHHHhh------------------------------------hhhhhHHHHH-HHHHHHhc
Confidence 34666655 3433 454544321 1245677664 44444568
Q ss_pred cCCCEEEEeCCCCCCChHHHHHH-HHHHHhhh--CCCeEEEEcCCCCccccCCEEEEEeCCEEEEe
Q 001980 255 KNPKILLLDEATSALDAGSESIV-QEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVET 317 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i-~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~ 317 (987)
.+|+++|||||++|+|+.....+ ...++.+. .|.|+|++||+.+....+|++..+++|++...
T Consensus 685 ~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 685 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred cCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 99999999999999999755544 56666664 38999999999988777888777788877543
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-15 Score=171.57 Aligned_cols=181 Identities=13% Similarity=0.168 Sum_probs=115.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcE--EEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQS--QALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 821 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~--vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~ 821 (987)
.+++++ +++|++ .+ |+++||+|++|+. +|||||||||||||+++|+|+. ++|.++........++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 355666 778853 35 9999999999999 9999999999999999999983 5666665544445577
Q ss_pred ccEEEccccccc-cccHHHHhccCCCCCCHHHHHHHHH---HcCchhhHhh-------CCCcCCCcc-------CCCCCC
Q 001980 822 KIGLVQQEPALF-AASIFDNIAYGKEGATEAEVVEAAR---AANVHGFVSA-------LPNAYKTPV-------GERGVQ 883 (987)
Q Consensus 822 ~i~~VpQdp~lF-~gTIreNL~~~~~~~sd~ei~~al~---~a~l~~~i~~-------lp~gldt~v-------ge~G~~ 883 (987)
.+++++|++.++ .-|+.||+.++.. .+.+..|..+. ...+.+++.. ++..-|+.| .+.+..
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~ 161 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS 161 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred eEEEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence 899999999877 5699999987753 33332222210 0011122221 122233331 233445
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHH-Hc-CCCeEEEEecC
Q 001980 884 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALER-LM-RGRTTVLVAHR 941 (987)
Q Consensus 884 LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~-~~-~~~TvI~IaHR 941 (987)
|+..+ +.++|+|-.+++|+++||+|..|.+.--..+.+.|++ +. .|.+|+.|+..
T Consensus 162 l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 162 LKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp -CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 77666 7899999999999999999999998777777777876 33 57788888854
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-16 Score=162.70 Aligned_cols=144 Identities=13% Similarity=0.109 Sum_probs=101.4
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchh-cH----HH
Q 001980 122 SIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP--NAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TI----LE 194 (987)
Q Consensus 122 ~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv----~e 194 (987)
.-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+... ..+..++|++|++.+|.. ++ .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 446799999999999999999999999999986 68999888765432 124579999999877765 55 45
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHH
Q 001980 195 NILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274 (987)
Q Consensus 195 ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~ 274 (987)
|+.+.... .|-.+++ ++.++..++++||| ||+.+.
T Consensus 86 ~~~~~~~~-------------------------------------yg~~~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 86 HAEVFGNY-------------------------------------YGTSREA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp EEEETTEE-------------------------------------EEEEHHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHHHHhcc-------------------------------------CCCCHHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 55432110 0000111 22333446999999 999999
Q ss_pred HHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHH
Q 001980 275 SIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 275 ~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
..+.+.+. ++.||+++||+++.+.. |+ +.+| .++.+++.+
T Consensus 121 ~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 121 QQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 99988765 57899999999988765 32 5666 567777754
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.9e-17 Score=178.89 Aligned_cols=149 Identities=18% Similarity=0.172 Sum_probs=110.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccC--------CCCCceEEECCccCCCCC---------------HHHHhcccEEE---c
Q 001980 774 QSQALVGASGSGKSSVIALIERFY--------DPTAGKVMIDGKDIRRLN---------------LKSLRLKIGLV---Q 827 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~--------~p~~G~I~idG~di~~i~---------------l~~lR~~i~~V---p 827 (987)
+.++|+|++|||||||++.|.|++ .|+.|+|.|||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 579999999999999999999998 789999999999998763 35678889988 7
Q ss_pred cccc-cccccHHHHhccCCCCCCHHHHHHHH-------HHcCchhhHhh--CCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 828 QEPA-LFAASIFDNIAYGKEGATEAEVVEAA-------RAANVHGFVSA--LPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 828 Qdp~-lF~gTIreNL~~~~~~~sd~ei~~al-------~~a~l~~~i~~--lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
|++. .|+.++.||+.++.| ..+.+.+ +...+...+.- +.+..+.. .++|+||+||.+.+|+
T Consensus 85 q~~~~~~~~~v~E~~~l~~p----~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~-----~~ls~g~~Q~~~ad~i 155 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP----GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM-----NQFTIAQSQVGYADRI 155 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH----HHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH-----HHCHHHHHHHHTCSEE
T ss_pred hcCCCCCCEEEEeCCCCCCH----HHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH-----hhchHHHHHHHhCCEE
Confidence 8876 478899999977643 2222211 11222211110 01111111 1589999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCc
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRL 942 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl 942 (987)
++.+|+++ ||| +.+.+.|++..++.|+++++|+.
T Consensus 156 ll~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 156 LLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp EEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSC
T ss_pred EEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccC
Confidence 99999987 888 67788888877789999999964
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-14 Score=157.54 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=98.3
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHh-cCCCC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENIL-YGKPE 202 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~-~~~~~ 202 (987)
.+++|++++|+||||||||||++.+++... .|++. .|.+... ...+.|+..+... ..+.+++. ++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~- 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAH- 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTT-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhh-
Confidence 378999999999999999999999998654 46553 3433211 2367888766432 22322221 2211
Q ss_pred CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC--CCChHHH---HHH
Q 001980 203 ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS--ALDAGSE---SIV 277 (987)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts--~LD~~~~---~~i 277 (987)
........ .++.+ ++....+.....||+||+|++ |+++.+|+++++||||+ ++|.... ..+
T Consensus 94 ~~~~~~~~---------~~~~l--~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQA---------VADGL--LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHHH---------HHHHE--EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhhh---------ccCce--EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 11111111 11222 233334566788999998875 68889999999999999 9998544 677
Q ss_pred HHHHHhhh--CCCeEEEEcCCCCcc
Q 001980 278 QEALDRLM--VGRTTVVVAHRLSTI 300 (987)
Q Consensus 278 ~~~l~~~~--~~~tvi~vtH~~~~~ 300 (987)
.+.|.++. .|.|||+++|.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcc
Confidence 77787774 389999999997654
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.9e-18 Score=175.96 Aligned_cols=146 Identities=18% Similarity=0.196 Sum_probs=104.7
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhcc----CC
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAY----GK 845 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~----~~ 845 (987)
.++|+++||+|+||||||||+++|.|+++|. | ..+++|+||.+.++.+.++|+.. +.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 4689999999999999999999999999976 4 35788888888888888777631 11
Q ss_pred CC-CCHHHHHHHHHHcCchhhHhhCCC--cCCCccCCCCCCCChhHHHHHHHH-HHHccCCCEEEEeCCC----------
Q 001980 846 EG-ATEAEVVEAARAANVHGFVSALPN--AYKTPVGERGVQLSGGQKQRIAIA-RAVLKNPAILLLDEAT---------- 911 (987)
Q Consensus 846 ~~-~sd~ei~~al~~a~l~~~i~~lp~--gldt~vge~G~~LSgGQrQrlaLA-RAllr~p~ILlLDEaT---------- 911 (987)
+. ...+.+. +++..++. .+++++.+.+..+|+||+|++++| |+++.++.++++|||.
T Consensus 80 ~~~~~~~~~~---------~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~ 150 (208)
T 3c8u_A 80 PETFDFEGFQ---------RLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDV 150 (208)
T ss_dssp GGGBCHHHHH---------HHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSE
T ss_pred CchhhHHHHH---------HHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCE
Confidence 11 1222222 22333333 377888999999999999999999 9999999999999985
Q ss_pred -CCCCHHHHHHHHHHHHHHc-CCCeEEEEecCch
Q 001980 912 -SALDAESECVLQEALERLM-RGRTTVLVAHRLS 943 (987)
Q Consensus 912 -S~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ 943 (987)
.-+|...+..+++.+++.. +|.|.-.+.||..
T Consensus 151 ~i~vd~~~~~~~~R~~~R~~~~g~t~~~~~~~~~ 184 (208)
T 3c8u_A 151 SIRLEVPMADLEARLVQRWLDHGLNHDAAVARAQ 184 (208)
T ss_dssp EEEECCCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 3356666666666665543 3455444444443
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-14 Score=155.91 Aligned_cols=151 Identities=15% Similarity=0.160 Sum_probs=100.8
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhc-cCCCC
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIA-YGKEG 847 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~-~~~~~ 847 (987)
.+++|+.++|+|++|||||||++.+.+... .|.+ +.|.+... +..+.|++.+... ..+..++. ++. +
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 478999999999999999999999998664 5766 34544321 3457777766532 22323321 121 2
Q ss_pred CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC--CCCHHHH---HHH
Q 001980 848 ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS--ALDAESE---CVL 922 (987)
Q Consensus 848 ~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS--~LD~~te---~~I 922 (987)
..+.+..++++...+.+ ..+.....||+||+|++ |+++++|++||+||||+ ++|.... ..+
T Consensus 94 ~~~~~~~~~~~~l~l~~-----------~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQAVADGLLIQP-----------LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHHHHHHHEEECC-----------CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhhhccCceEEee-----------cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 33444444455544332 12334557999998865 78899999999999999 9998554 667
Q ss_pred HHHHHHHc--CCCeEEEEecCchhh
Q 001980 923 QEALERLM--RGRTTVLVAHRLSTI 945 (987)
Q Consensus 923 ~~~l~~~~--~~~TvI~IaHRl~ti 945 (987)
.+.|.+.. .++|||+|+|.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcc
Confidence 77777764 389999999987654
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-15 Score=171.18 Aligned_cols=180 Identities=12% Similarity=0.111 Sum_probs=113.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhc
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKT--VAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD 176 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~--~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 176 (987)
.+++++ ++.|++ .+ |+++||++++|++ ++|+||||||||||+++|+|+. ++|.++....+...++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 356667 888863 34 8999999999999 9999999999999999999984 3444443322223345
Q ss_pred ceEEEcCCCCCchh-cHHHHHhcCCCCCCH---HHHHHHHHHHhHHHHHHhC-------CCCCccc-------ccCCCCC
Q 001980 177 QIGLVNQEPALFAT-TILENILYGKPEATM---AEVEAAASAANAHSFITLL-------PNGYSTQ-------VGERGVQ 238 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------~~g~~t~-------~~~~g~~ 238 (987)
.++|++|++.++.. |+.||+.+|...... ..+.+... ....+.+... +...++. +-..+..
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~ 161 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS 161 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred eEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence 79999999988754 999999998642211 11111111 1112223222 1111221 1233446
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHh-hh-CCCeEEEEcC
Q 001980 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDR-LM-VGRTTVVVAH 295 (987)
Q Consensus 239 LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~-~~-~~~tvi~vtH 295 (987)
|+-.. +.++++|..+++|+++|+|+..|.+.....+.+.+.+ +. .|.+++.++.
T Consensus 162 l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 162 LKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp -CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred CCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 77666 7999999999999999999999999887888888876 54 4788888775
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-16 Score=172.80 Aligned_cols=130 Identities=11% Similarity=0.011 Sum_probs=92.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCC--
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEA-- 203 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~-- 203 (987)
+++.+++|+|++|||||||++.|.+++.+. | . . ++.+.+|+|++++++.++++|+.++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 356799999999999999999999998764 2 0 0 33466669999999999999998753210
Q ss_pred -CHHHHHHHHHHHhHHHHHHhCCCCCccc------ccCCCCCCChHHHHHHHHH--HHhccCCCEEEEeCCCCCCChHH
Q 001980 204 -TMAEVEAAASAANAHSFITLLPNGYSTQ------VGERGVQLSGGQKQRIAIA--RAMLKNPKILLLDEATSALDAGS 273 (987)
Q Consensus 204 -~~~~~~~~~~~~~~~~~~~~~~~g~~t~------~~~~g~~LSgGqkqRialA--Ral~~~~~illlDEpts~LD~~~ 273 (987)
.......+.....+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|+|+|||++++|+..
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000001111233456778888886653 5667789999999999998 665 999999999999999864
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-14 Score=150.69 Aligned_cols=151 Identities=14% Similarity=0.091 Sum_probs=98.7
Q ss_pred cceeeeeE-EEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHH
Q 001980 761 VVFKDFNL-RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 839 (987)
Q Consensus 761 ~vL~~vsl-~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIre 839 (987)
+.|+++.. -+++|+.++|+|++|||||||++.|.+ .+..+.++++..+ ..+.+.+++.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~~----------------- 65 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQM----------------- 65 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHHH-----------------
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHHH-----------------
Confidence 46777765 799999999999999999999999999 4444555555432 1222222221
Q ss_pred HhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh--HHHHHHHHHHHccC-CCEEEEeCCCCCCCH
Q 001980 840 NIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG--QKQRIAIARAVLKN-PAILLLDEATSALDA 916 (987)
Q Consensus 840 NL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgG--QrQrlaLARAllr~-p~ILlLDEaTS~LD~ 916 (987)
... .....+++ ++ .+. +. ..|++ |+|+++.+|+++++ |+++|+||||+.+|.
T Consensus 66 -~~~--~~~~~~~~---~~---------~~~------~~----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 66 -AET--RGLNPEEA---LS---------RFI------LF----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp -HHT--TTCCHHHH---HH---------HEE------EE----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred -HHh--cCCChHHH---hh---------cEE------EE----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 100 00111221 11 110 11 12333 47899999999986 999999999999998
Q ss_pred HHH--------HHHHHHHHHHcC--CCeEEEEecCch-------------hh-hccCEEEEEeCC
Q 001980 917 ESE--------CVLQEALERLMR--GRTTVLVAHRLS-------------TI-RGVDCIGVVQDG 957 (987)
Q Consensus 917 ~te--------~~I~~~l~~~~~--~~TvI~IaHRl~-------------ti-~~~D~Iivl~~G 957 (987)
..+ ..+.+.|++..+ ++|+|+++|... .+ ..||+|++|+..
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 543 334444655543 899999999865 33 358999999764
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-15 Score=156.12 Aligned_cols=138 Identities=16% Similarity=0.055 Sum_probs=92.2
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCC
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGA 848 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~ 848 (987)
.+++|+.++|+|+|||||||++++|.+. |..|.|.+||.++..... -++.+++++|++. ...|+.+|+....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 678999999987643221 1345788898775 4668888885321
Q ss_pred CHHHHHHHHHHcCchhhHhhCCC--cCCCc--cCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 001980 849 TEAEVVEAARAANVHGFVSALPN--AYKTP--VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 924 (987)
Q Consensus 849 sd~ei~~al~~a~l~~~i~~lp~--gldt~--vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~ 924 (987)
.. .. ..+....++.... +++.. .+.....+|+|++|++++||++.++|+++ +|++..+.+.+
T Consensus 77 ---~~--~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 77 ---GR--YA-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ---HH--HH-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ---HH--Hh-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 11 11 1111111111100 11000 02233569999999999999999999987 58876666666
Q ss_pred HHHH
Q 001980 925 ALER 928 (987)
Q Consensus 925 ~l~~ 928 (987)
.++.
T Consensus 143 ~~~~ 146 (191)
T 1zp6_A 143 QFAD 146 (191)
T ss_dssp HTTC
T ss_pred HHhc
Confidence 6544
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.6e-15 Score=179.76 Aligned_cols=166 Identities=15% Similarity=0.146 Sum_probs=108.6
Q ss_pred ccEEEEeEEEECCCC----CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-CCceEEECCccCCCCCHH
Q 001980 743 GEIELRHVDFAYPSR----PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-TAGKVMIDGKDIRRLNLK 817 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~----~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-~~G~I~idG~di~~i~l~ 817 (987)
+.|++++. ++|-- .+..+++|+||+ ++|+.++|+|||||||||+++++.++.-+ +.| ..+..
T Consensus 576 ~~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA---- 642 (800)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----
T ss_pred CCEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----
Confidence 35777764 34311 134589999999 99999999999999999999999997532 222 11111
Q ss_pred HHhcccEEEcccccccc-ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 818 SLRLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 818 ~lR~~i~~VpQdp~lF~-gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
-+.++++++| +|. -++.+|+..+ -..+|+++++ ++.+.
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~------------------------------------~stf~~e~~~-~~~il 681 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG------------------------------------RSTFMVEMTE-TANIL 681 (800)
T ss_dssp -SEEEECCCCE---EEEEEC-----------------------------------------------CHHHHHH-HHHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh------------------------------------hhhhhHHHHH-HHHHH
Confidence 1244666655 332 2444443211 1236777765 44444
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCCEEEEe
Q 001980 897 AVLKNPAILLLDEATSALDAESECVL-QEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 962 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I-~~~l~~~~--~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~ 962 (987)
..+.+|++|||||||+++|+.....+ +..++... .++|+|++||+.+....+|++..+.+|++...
T Consensus 682 ~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 682 HNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred HhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 56899999999999999888655544 56666553 38999999999988777888777777776543
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=8.5e-17 Score=178.14 Aligned_cols=155 Identities=21% Similarity=0.178 Sum_probs=108.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC--------CCCccEEEECCEeCCCCC---------------HHHHhcceEEE---c
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFY--------DPNAGHVLLDNVDIKTLQ---------------LRWLRDQIGLV---N 182 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~--------~~~~G~i~~~g~~~~~~~---------------~~~~~~~i~~v---~ 182 (987)
++++|+|+||||||||++.|+|+. .|+.|+|.+||.++...+ ...+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999999999987653 23456678888 6
Q ss_pred CCCCC-chhcHHHHHhcCCCCCCHHHHHHHH-HHHhHHHHHHhCCCCCcccccC-----CCCCCChHHHHHHHHHHHhcc
Q 001980 183 QEPAL-FATTILENILYGKPEATMAEVEAAA-SAANAHSFITLLPNGYSTQVGE-----RGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 183 Q~~~l-~~~tv~eni~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~t~~~~-----~g~~LSgGqkqRialARal~~ 255 (987)
|++.+ ++.++.||..++.|. .+.... ........ ..+ .+.-+.++- ...+|||||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~----~~~~~~~~~~~~~~~-~~l-~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPG----PIIQTFFSHEVLCQR-YLL-DGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHH----HHHHHHHHSHHHHHH-EEE-EEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHH----HHHHHHhcCccccCe-EEE-CCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEE
Confidence 88764 567999999887542 221111 00000000 000 011122221 112689999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcc
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~ 300 (987)
+|+++ ||| +.+.+.++++..+.|++++||+...+
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~ 192 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDL 192 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCG
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCH
Confidence 99987 888 67777777776789999999975433
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-15 Score=155.84 Aligned_cols=151 Identities=14% Similarity=0.025 Sum_probs=94.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEA 203 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 203 (987)
.+++|++++|+||||||||||+++|+|. |+.|.|.++|.++..... .+..++|++|++. .+.|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 788999999866422110 1234678888654 3458888886421
Q ss_pred CHHHHHHHHHHHhHHHHHHhCC--CCCcccc--cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHH
Q 001980 204 TMAEVEAAASAANAHSFITLLP--NGYSTQV--GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 279 (987)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~--~g~~t~~--~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~ 279 (987)
... . ..+....++... .+++... +.....+|+|++||+++||++.++|+++ +|+...+.+.+
T Consensus 77 ---~~~--~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 77 ---GRY--A-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ---HHH--H-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ---HHH--h-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 000 0 000000000000 0111111 2334579999999999999999999876 58877777777
Q ss_pred HHHhhhCCCeEEEEcCC
Q 001980 280 ALDRLMVGRTTVVVAHR 296 (987)
Q Consensus 280 ~l~~~~~~~tvi~vtH~ 296 (987)
.+..+..-..+++.|++
T Consensus 143 ~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HTTCCGGGGGGEEECTT
T ss_pred HHhccCcccccEEECCC
Confidence 66554321233444543
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-13 Score=143.38 Aligned_cols=151 Identities=13% Similarity=0.097 Sum_probs=95.3
Q ss_pred cceeeeeE-EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHH
Q 001980 116 IIFRDFSI-FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILE 194 (987)
Q Consensus 116 ~~l~~i~l-~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 194 (987)
+.|+++.. .+++|++++|+||||||||||++.+++ .+..+ +.|+..+..+-...+.+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~--------------------v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKK--------------------VAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSE--------------------EEEEESSCCCCHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCc--------------------EEEEECCCCCCHHHHHH
Confidence 35666654 689999999999999999999999999 33223 33333333221222222
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChH--HHHHHHHHHHhccC-CCEEEEeCCCCCCCh
Q 001980 195 NILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG--QKQRIAIARAMLKN-PKILLLDEATSALDA 271 (987)
Q Consensus 195 ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgG--qkqRialARal~~~-~~illlDEpts~LD~ 271 (987)
..... ....++ ..+.+ .+ ..+|++ |+|+++.+|+++++ |+++++||||+.+|+
T Consensus 65 ~~~~~--~~~~~~------------~~~~~------~~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 65 MAETR--GLNPEE------------ALSRF------IL----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp HHHTT--TCCHHH------------HHHHE------EE----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred HHHhc--CCChHH------------HhhcE------EE----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 21110 011111 11111 01 133444 46789999999986 999999999999997
Q ss_pred HHH--------HHHHHHHHhhhC--CCeEEEEcCCCCc-------------cc-cCCEEEEEeCC
Q 001980 272 GSE--------SIVQEALDRLMV--GRTTVVVAHRLST-------------IR-NVDTVAVIQQG 312 (987)
Q Consensus 272 ~~~--------~~i~~~l~~~~~--~~tvi~vtH~~~~-------------~~-~~d~i~~l~~G 312 (987)
... ..+.+.|+++.+ +.|+|+++|.... +. .||+|++|+..
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 432 334445666543 8999999998763 33 48999999754
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-13 Score=145.91 Aligned_cols=146 Identities=20% Similarity=0.288 Sum_probs=91.4
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhc--cCCC-----CCceEEECCccCCC-CCHHHHhcccEEEccccccccccHHHH
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIER--FYDP-----TAGKVMIDGKDIRR-LNLKSLRLKIGLVQQEPALFAASIFDN 840 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~r--l~~p-----~~G~I~idG~di~~-i~l~~lR~~i~~VpQdp~lF~gTIreN 840 (987)
-|++|+.++|+||+|||||||++.|.+ ..+| ..|.+++++.+.-. -.+..+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 4554 57899999876311 1133455567766654 4555
Q ss_pred hccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHH-
Q 001980 841 IAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL--KNPAILLLDEATSALDAE- 917 (987)
Q Consensus 841 L~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll--r~p~ILlLDEaTS~LD~~- 917 (987)
+.+..+ .+.++..+. +.-+++++ .+|++|++||+|+.+|..
T Consensus 93 ~~~~~~-~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARA-FNTDHQTQL-----------------------------------LYQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEEC-CSHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred eEEEec-CCHHHHHHH-----------------------------------HHHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 543221 222222211 22222222 589999999999999986
Q ss_pred ------HHH-----HHHHHHHHHc--CCCeEEEEecCchhhh--------------------ccCEEEEEeCC
Q 001980 918 ------SEC-----VLQEALERLM--RGRTTVLVAHRLSTIR--------------------GVDCIGVVQDG 957 (987)
Q Consensus 918 ------te~-----~I~~~l~~~~--~~~TvI~IaHRl~ti~--------------------~~D~Iivl~~G 957 (987)
+++ .+.+.|.+.. .++|||+++|-..... .||.|++|+.|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 432 2333344332 3899999999654332 47999999875
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-15 Score=170.54 Aligned_cols=172 Identities=15% Similarity=0.165 Sum_probs=119.1
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC----HHHHh
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN----LKSLR 820 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----l~~lR 820 (987)
|+++|++++|. ...+|+++||++++|+.++|+|++|||||||+++|.|++.|++|+|.|.|.|+.... ....|
T Consensus 30 ie~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 44556667773 235899999999999999999999999999999999999999999999999986533 23457
Q ss_pred cccEEEcccccccc----------cc---HHHHhc--------------cCCCCCCHHHHHHHHHHcC------------
Q 001980 821 LKIGLVQQEPALFA----------AS---IFDNIA--------------YGKEGATEAEVVEAARAAN------------ 861 (987)
Q Consensus 821 ~~i~~VpQdp~lF~----------gT---IreNL~--------------~~~~~~sd~ei~~al~~a~------------ 861 (987)
.++++++|++.+|. || +++.+. .|.. .++..+. +.+.
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~-~~~~~v~---~~~d~vl~v~d~~~~~ 182 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVG-QSETAVA---DLTDFFLVLMLPGAGD 182 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSS-SCHHHHH---TTSSEEEEEECSCC--
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCC-cchhhHH---hhCCEEEEEEcCCCcc
Confidence 88999999998884 22 222220 0100 0111111 1111
Q ss_pred ----chhhHhhCCC-----cCCCccCCCCCCCChhHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHH
Q 001980 862 ----VHGFVSALPN-----AYKTPVGERGVQLSGGQKQRIAIARAVLK------NPAILLLDEATSALDAESECVLQEAL 926 (987)
Q Consensus 862 ----l~~~i~~lp~-----gldt~vge~G~~LSgGQrQrlaLARAllr------~p~ILlLDEaTS~LD~~te~~I~~~l 926 (987)
+...+...|. +.|.. ....+|+|++|+++.|++++. +|+++. ||++|.+.-..+.+.|
T Consensus 183 ~~~~i~~~i~~~~~ivvlNK~Dl~---~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I 255 (337)
T 2qm8_A 183 ELQGIKKGIFELADMIAVNKADDG---DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRI 255 (337)
T ss_dssp ----CCTTHHHHCSEEEEECCSTT---CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHH
T ss_pred cHHHHHHHHhccccEEEEEchhcc---CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHH
Confidence 0001111111 11210 113479999999999999998 688887 9999999999999998
Q ss_pred HHHc
Q 001980 927 ERLM 930 (987)
Q Consensus 927 ~~~~ 930 (987)
.+..
T Consensus 256 ~~~~ 259 (337)
T 2qm8_A 256 EDHR 259 (337)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.40 E-value=8.3e-14 Score=158.97 Aligned_cols=158 Identities=22% Similarity=0.316 Sum_probs=104.6
Q ss_pred eeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC----HHH--HhcccEEEccccccc-ccc
Q 001980 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN----LKS--LRLKIGLVQQEPALF-AAS 836 (987)
Q Consensus 764 ~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----l~~--lR~~i~~VpQdp~lF-~gT 836 (987)
+++||++++|+.++|||+||||||||+++|.|++.|++|+|.++|.|+.... +.. .|+++++|+|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5788899999999999999999999999999999999999999988876532 223 478899999998755 568
Q ss_pred HHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC-C-CEEEEeCCCCCC
Q 001980 837 IFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN-P-AILLLDEATSAL 914 (987)
Q Consensus 837 IreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~-p-~ILlLDEaTS~L 914 (987)
+++|+.++.. .+.+-.+-...+.++. -.++-.--+|++.++|++... | .+|+..+||++.
T Consensus 364 V~e~l~~a~~-------------~~~DvVLIDTaGrl~~-----~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq 425 (503)
T 2yhs_A 364 IFDAIQAAKA-------------RNIDVLIADTAGRLQN-----KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 425 (503)
T ss_dssp HHHHHHHHHH-------------TTCSEEEECCCCSCCC-----HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH
T ss_pred HHHHHHHHHh-------------cCCCEEEEeCCCccch-----hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH
Confidence 9999975421 1111111111111111 011222335788899987643 5 355555588876
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEEecCchh
Q 001980 915 DAESECVLQEALERLMRGRTTVLVAHRLST 944 (987)
Q Consensus 915 D~~te~~I~~~l~~~~~~~TvI~IaHRl~t 944 (987)
|.... .+.+.+. -+.|.+++|| ++.
T Consensus 426 ~al~~---ak~f~~~-~~itgvIlTK-LD~ 450 (503)
T 2yhs_A 426 NAVSQ---AKLFHEA-VGLTGITLTK-LDG 450 (503)
T ss_dssp HHHHH---HHHHHHH-TCCSEEEEEC-GGG
T ss_pred HHHHH---HHHHHhh-cCCCEEEEEc-CCC
Confidence 54422 2223322 3689999999 443
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.9e-16 Score=159.84 Aligned_cols=134 Identities=18% Similarity=0.228 Sum_probs=93.2
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhc----CC
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILY----GK 200 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~----~~ 200 (987)
.++|++++|+||||||||||+++|+|+++|+ | ..+++++|+...++.+..+|+.. +.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 4789999999999999999999999999875 4 15778888877777766666531 11
Q ss_pred CCC-CHHHHHHHHHHHhHHHHHHhCCCC--CcccccCCCCCCChHHHHHHHHH-HHhccCCCEEEEeCCCCCCChHHHHH
Q 001980 201 PEA-TMAEVEAAASAANAHSFITLLPNG--YSTQVGERGVQLSGGQKQRIAIA-RAMLKNPKILLLDEATSALDAGSESI 276 (987)
Q Consensus 201 ~~~-~~~~~~~~~~~~~~~~~~~~~~~g--~~t~~~~~g~~LSgGqkqRialA-Ral~~~~~illlDEpts~LD~~~~~~ 276 (987)
+.. ....+ .+.+..++.| +.+.+.+++..+|+||+||+++| |+++.++.++++|||...
T Consensus 80 ~~~~~~~~~---------~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~-------- 142 (208)
T 3c8u_A 80 PETFDFEGF---------QRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWR-------- 142 (208)
T ss_dssp GGGBCHHHH---------HHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGG--------
T ss_pred CchhhHHHH---------HHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhH--------
Confidence 111 11111 2223333334 56677889999999999999998 888888888888888410
Q ss_pred HHHHHHhhhCCCeEEEEcCCCCc
Q 001980 277 VQEALDRLMVGRTTVVVAHRLST 299 (987)
Q Consensus 277 i~~~l~~~~~~~tvi~vtH~~~~ 299 (987)
.+.+. -..+|++.+..+.
T Consensus 143 ---~l~~~--~d~~i~vd~~~~~ 160 (208)
T 3c8u_A 143 ---DLTAI--WDVSIRLEVPMAD 160 (208)
T ss_dssp ---GGGGT--CSEEEEECCCHHH
T ss_pred ---HHHHh--cCEEEEEeCCHHH
Confidence 11111 2467888887765
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-13 Score=143.63 Aligned_cols=146 Identities=18% Similarity=0.251 Sum_probs=86.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHc--CCCC-----CccEEEECCEeCCC-CCHHHHhcceEEEcCCCCCchhcHHHH
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIER--FYDP-----NAGHVLLDNVDIKT-LQLRWLRDQIGLVNQEPALFATTILEN 195 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g--~~~~-----~~G~i~~~g~~~~~-~~~~~~~~~i~~v~Q~~~l~~~tv~en 195 (987)
-+++|++++|+||||||||||++.|++ ..+| ..|.+++++.+... .....+.+++++.+| .+.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~-------~~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS-------DVLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH-------HHhhC
Confidence 478999999999999999999999999 5655 57788888754211 111223334444433 24455
Q ss_pred HhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCCChH-
Q 001980 196 ILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML--KNPKILLLDEATSALDAG- 272 (987)
Q Consensus 196 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~--~~~~illlDEpts~LD~~- 272 (987)
+.+..+. +.++..+. +.-++.++ .+|+++++|||++.+|+.
T Consensus 93 ~~~~~~~-~~~~~~~~-----------------------------------~~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARAF-NTDHQTQL-----------------------------------LYQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEECC-SHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred eEEEecC-CHHHHHHH-----------------------------------HHHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 5443221 11111111 11111222 589999999999999985
Q ss_pred ------H-----HHHHHHHHHhhh--CCCeEEEEcCCCCc-------------------cc-cCCEEEEEeCC
Q 001980 273 ------S-----ESIVQEALDRLM--VGRTTVVVAHRLST-------------------IR-NVDTVAVIQQG 312 (987)
Q Consensus 273 ------~-----~~~i~~~l~~~~--~~~tvi~vtH~~~~-------------------~~-~~d~i~~l~~G 312 (987)
. ...+...|.++. .+.|||+++|.... +. .||++++|+.|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 233444454443 38999999996543 22 47999999865
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-13 Score=155.42 Aligned_cols=149 Identities=19% Similarity=0.289 Sum_probs=102.1
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHH--HhcceEEEcCCCCCch-hc
Q 001980 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ----LRW--LRDQIGLVNQEPALFA-TT 191 (987)
Q Consensus 119 ~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~----~~~--~~~~i~~v~Q~~~l~~-~t 191 (987)
+++||++++|++++|+|+||||||||++.|+|++.|++|+|.++|.+..... ... .|.+|+|++|++.++. .|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 6889999999999999999999999999999999999999999887764321 122 3668999999987764 49
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccc-cCCCC-----CCChHHHHHHHHHHHhcc-CC-CEEEEe
Q 001980 192 ILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQV-GERGV-----QLSGGQKQRIAIARAMLK-NP-KILLLD 263 (987)
Q Consensus 192 v~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~-~~~g~-----~LSgGqkqRialARal~~-~~-~illlD 263 (987)
+++|+.++... |++..+ ..-|. +|-.--+|++.++|++.. .| .++|..
T Consensus 364 V~e~l~~a~~~------------------------~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 364 IFDAIQAAKAR------------------------NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHT------------------------TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHhc------------------------CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 99999764210 111111 11110 122233578899998754 45 366666
Q ss_pred CCCCCCChHHHHHHHHHHHhhhCCCeEEEEcC
Q 001980 264 EATSALDAGSESIVQEALDRLMVGRTTVVVAH 295 (987)
Q Consensus 264 Epts~LD~~~~~~i~~~l~~~~~~~tvi~vtH 295 (987)
+|+++.|.... .+.+.+ ..+.|.|++||
T Consensus 420 DattGq~al~~---ak~f~~-~~~itgvIlTK 447 (503)
T 2yhs_A 420 DASTGQNAVSQ---AKLFHE-AVGLTGITLTK 447 (503)
T ss_dssp EGGGTHHHHHH---HHHHHH-HTCCSEEEEEC
T ss_pred cCcccHHHHHH---HHHHHh-hcCCCEEEEEc
Confidence 68877655421 111221 13789999999
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-16 Score=162.02 Aligned_cols=165 Identities=17% Similarity=0.100 Sum_probs=108.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccc-cccHHHHhccCCCCCCHH
Q 001980 773 GQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALF-AASIFDNIAYGKEGATEA 851 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF-~gTIreNL~~~~~~~sd~ 851 (987)
|+.++|+|+|||||||++++|.+ |.+|.+.+||.++... ..+++++|++..+ ..|+++|+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 68899999999999999999987 5689999999766432 2467788876433 45788887421
Q ss_pred HHHHHHHHcCchhhHhhCCCcCCCccCC----CCCCC--ChhHHHHHHHHH------HHccCCCEEEEeCCCCCCCHHHH
Q 001980 852 EVVEAARAANVHGFVSALPNAYKTPVGE----RGVQL--SGGQKQRIAIAR------AVLKNPAILLLDEATSALDAESE 919 (987)
Q Consensus 852 ei~~al~~a~l~~~i~~lp~gldt~vge----~G~~L--SgGQrQrlaLAR------Allr~p~ILlLDEaTS~LD~~te 919 (987)
....+ ..+.. .+ +|...+. .-..+ |+|++|++.++. +++++++...+|+ ++|+...
T Consensus 66 -~~~~~-~~~~~-~i------ld~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 66 -TVNFL-LAQND-VV------LDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp -HHHHH-HTTCE-EE------EESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred -HHHHH-hcCCc-EE------EeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 11111 11110 00 1110010 00124 888888888888 8888888888884 7999887
Q ss_pred HHHHHHHHHHc-CCCeEEEEecC-chhhhc-cCEEEEEeCCEEEEecChhHH
Q 001980 920 CVLQEALERLM-RGRTTVLVAHR-LSTIRG-VDCIGVVQDGRIVEQGSHSEL 968 (987)
Q Consensus 920 ~~I~~~l~~~~-~~~TvI~IaHR-l~ti~~-~D~Iivl~~G~ive~Gt~~eL 968 (987)
.. ++.+++.. .+.|+|..+|. ++++.. ||+|+ ++|+++..|+++-|
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred HH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 77 77777664 35799999999 988866 79998 99999999998766
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-15 Score=174.74 Aligned_cols=171 Identities=18% Similarity=0.179 Sum_probs=119.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEcccccccc--ccHH
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA--ASIF 838 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~--gTIr 838 (987)
.+++++++.+++|+.++|+|+|||||||++++|.|+++|++|.|+|+|.+--.++. +..+++++|++. .. .|++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHH
Confidence 47899999999999999999999999999999999999999999999876333221 456778888766 33 2666
Q ss_pred HHhccC---C------CCCCHHHHHHHHHHcCc-------------hhhHhhC---CCcCCCccC-------CCCCCCCh
Q 001980 839 DNIAYG---K------EGATEAEVVEAARAANV-------------HGFVSAL---PNAYKTPVG-------ERGVQLSG 886 (987)
Q Consensus 839 eNL~~~---~------~~~sd~ei~~al~~a~l-------------~~~i~~l---p~gldt~vg-------e~G~~LSg 886 (987)
+++... + .+..+.|...+++.++. .+.+.++ |.|+...+. .....+|+
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 665321 1 24566666666665431 1222222 222222111 12335799
Q ss_pred hHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEE--EecCchhhhc
Q 001980 887 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVL--VAHRLSTIRG 947 (987)
Q Consensus 887 GQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~--IaHRl~ti~~ 947 (987)
|||||.|+|. + | |+++|+++...+++.|.++. .++|++. +||+++.+..
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHH
Confidence 9999988762 1 7 99999988877777776654 3788875 8999998754
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.2e-15 Score=151.86 Aligned_cols=161 Identities=14% Similarity=0.078 Sum_probs=106.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCc-hhcHHHHHhcCCCCCCHH
Q 001980 128 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALF-ATTILENILYGKPEATMA 206 (987)
Q Consensus 128 G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~ 206 (987)
|++++|+||||||||||++.|++ |.+|.+.++|.++... ..+++++|.+... ..++++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 68999999999999999999997 7789999988554221 2457777765333 337777765310
Q ss_pred HHHHHHHHHhHHHHHHhCCCCCcccccC--------CCCCC--ChHHHHHHHHHH------HhccCCCEEEEeCCCCCCC
Q 001980 207 EVEAAASAANAHSFITLLPNGYSTQVGE--------RGVQL--SGGQKQRIAIAR------AMLKNPKILLLDEATSALD 270 (987)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~g~~t~~~~--------~g~~L--SgGqkqRialAR------al~~~~~illlDEpts~LD 270 (987)
.. ... .|....+.. ....+ |+|++|++.++. +++.+|+...+|+ ++|
T Consensus 67 ------~~-----~~~---~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld 129 (189)
T 2bdt_A 67 ------VN-----FLL---AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMG 129 (189)
T ss_dssp ------HH-----HHH---TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------C
T ss_pred ------HH-----HHh---cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCC
Confidence 00 000 011111110 00124 888888888887 8888888877884 799
Q ss_pred hHHHHHHHHHHHhhh-CCCeEEEEcCC-CCcccc-CCEEEEEeCCEEEEecChHHH
Q 001980 271 AGSESIVQEALDRLM-VGRTTVVVAHR-LSTIRN-VDTVAVIQQGQVVETGTHEEL 323 (987)
Q Consensus 271 ~~~~~~i~~~l~~~~-~~~tvi~vtH~-~~~~~~-~d~i~~l~~G~i~~~g~~~~l 323 (987)
+...+. ++.+..+. .+.++|.+||. ++.+.. ||+|+ ++|+++.+|+++-+
T Consensus 130 ~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 130 ERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp GGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred HHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 987777 77777764 36899999998 888876 79998 99999999987665
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-14 Score=150.34 Aligned_cols=137 Identities=19% Similarity=0.233 Sum_probs=96.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHH---cCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCch-hcHHHHHhcC---
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIE---RFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG--- 199 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~---g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~--- 199 (987)
++++++|+||||||||||+++|+ |+..|+.|+|.++|.+.. ..+...+.+++|++.+++ .++.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999988765432 123345666778877665 4899988641
Q ss_pred ----------CCCCCHHHHHHHHHHHhHHHHHHhC-CCC------------CcccccCCCCCCChHHHHHHHHHHHh-cc
Q 001980 200 ----------KPEATMAEVEAAASAANAHSFITLL-PNG------------YSTQVGERGVQLSGGQKQRIAIARAM-LK 255 (987)
Q Consensus 200 ----------~~~~~~~~~~~~~~~~~~~~~~~~~-~~g------------~~t~~~~~g~~LSgGqkqRialARal-~~ 255 (987)
.+ ....+... +..+ ..+ ..-...+....||| |+ ||+ +.
T Consensus 102 ~~~~~~il~g~~-~~~~~~~~----------l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~ 163 (246)
T 2bbw_A 102 RRGQHWLLDGFP-RTLGQAEA----------LDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFN 163 (246)
T ss_dssp CTTSCEEEESCC-CSHHHHHH----------HHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTS
T ss_pred cCCCeEEEECCC-CCHHHHHH----------HHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccC
Confidence 11 11111111 1111 111 11112345567999 66 888 99
Q ss_pred CCCEEEEe----CCCCCCChHHHHHHHHHHHhhh
Q 001980 256 NPKILLLD----EATSALDAGSESIVQEALDRLM 285 (987)
Q Consensus 256 ~~~illlD----Epts~LD~~~~~~i~~~l~~~~ 285 (987)
+|++++|| |||++||+.+++.+.+.+.++.
T Consensus 164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred CCcccccccccccccccCCCCcHHHHHHHHHHHH
Confidence 99999999 9999999999999999887764
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-13 Score=136.38 Aligned_cols=86 Identities=10% Similarity=0.033 Sum_probs=71.8
Q ss_pred EeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEc
Q 001980 748 RHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQ 827 (987)
Q Consensus 748 ~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~Vp 827 (987)
+|++++|. ...+++++||+|++|+.++|+||||||||||+++|.|++ |++|+|.++|.++.+. ...+ + +++
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~-~--~~~ 81 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA-G--KMI 81 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET-T--EEE
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC-C--cce
Confidence 44566663 235899999999999999999999999999999999999 9999999999988531 1112 2 799
Q ss_pred cccccccccHHHHhc
Q 001980 828 QEPALFAASIFDNIA 842 (987)
Q Consensus 828 Qdp~lF~gTIreNL~ 842 (987)
|++.+|.-|+.+|+.
T Consensus 82 q~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 82 YHFDLYRLADPEELE 96 (158)
T ss_dssp EEEECTTCSCTTHHH
T ss_pred eccccccCCcHHHHH
Confidence 999999889999984
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.2e-12 Score=143.71 Aligned_cols=74 Identities=28% Similarity=0.373 Sum_probs=67.4
Q ss_pred CCCChhHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEE
Q 001980 882 VQLSGGQKQRI------AIARAVLKN-PAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVV 954 (987)
Q Consensus 882 ~~LSgGQrQrl------aLARAllr~-p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl 954 (987)
..|||||+||+ |+|||+..+ |++|||||||++||+.+...+.+.|.+..+++|||+|||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 46999999987 678999999 99999999999999999999999999865567999999999866678999999
Q ss_pred e
Q 001980 955 Q 955 (987)
Q Consensus 955 ~ 955 (987)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=7.2e-15 Score=167.22 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=100.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC----CCHHHHh
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR----LNLKSLR 820 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~----i~l~~lR 820 (987)
++++++++.|. ...+|+++ + .++|+.++|+|||||||||++++|.+++.|++|+|.++|.++.. ++...++
T Consensus 144 ~~l~~Lg~~~~---~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~ 218 (418)
T 1p9r_A 144 LDLHSLGMTAH---NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVN 218 (418)
T ss_dssp CCGGGSCCCHH---HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECB
T ss_pred CCHHHcCCCHH---HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEc
Confidence 45666666663 23478888 5 38999999999999999999999999999999999999988742 1112345
Q ss_pred cccEEEc---------cccccc--c-----ccHHHHhccCC---------CCCCHHHHHHHHHHcCchhhHhhCCCcCCC
Q 001980 821 LKIGLVQ---------QEPALF--A-----ASIFDNIAYGK---------EGATEAEVVEAARAANVHGFVSALPNAYKT 875 (987)
Q Consensus 821 ~~i~~Vp---------Qdp~lF--~-----gTIreNL~~~~---------~~~sd~ei~~al~~a~l~~~i~~lp~gldt 875 (987)
+++++.+ |+|.++ . .|+++|+..+. ...+..+..+.+...++..+.
T Consensus 219 ~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--------- 289 (418)
T 1p9r_A 219 PRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--------- 289 (418)
T ss_dssp GGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH---------
T ss_pred cccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH---------
Confidence 5565544 998653 2 37888886431 111223444456666654432
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 001980 876 PVGERGVQLSGGQKQRIAIARAVLKNPAILL 906 (987)
Q Consensus 876 ~vge~G~~LSgGQrQrlaLARAllr~p~ILl 906 (987)
...+|||||+|| |||+++.+|++..
T Consensus 290 ----~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 290 ----ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp ----HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred ----HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 123699999999 9999999999976
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-12 Score=144.59 Aligned_cols=74 Identities=24% Similarity=0.382 Sum_probs=67.3
Q ss_pred CCCChHHHHHH------HHHHHhccC-CCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEE
Q 001980 237 VQLSGGQKQRI------AIARAMLKN-PKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVI 309 (987)
Q Consensus 237 ~~LSgGqkqRi------alARal~~~-~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l 309 (987)
..||||||||+ ++|||+..+ |+++||||||++||+..+..+.+.|.++..+.+||++||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 57999999988 668999999 99999999999999999999999998876567999999999865668999999
Q ss_pred e
Q 001980 310 Q 310 (987)
Q Consensus 310 ~ 310 (987)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-12 Score=141.83 Aligned_cols=165 Identities=16% Similarity=0.120 Sum_probs=108.1
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH----HHhcc--cEEEcccccccc-ccHHHHhc
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK----SLRLK--IGLVQQEPALFA-ASIFDNIA 842 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~----~lR~~--i~~VpQdp~lF~-gTIreNL~ 842 (987)
.++|+.++|||+|||||||+++.|.|++.|++|+|.++|.|+...... .++++ +.+++|++.++. .|+++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999876633 34444 459999987764 58899986
Q ss_pred cCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH
Q 001980 843 YGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 922 (987)
Q Consensus 843 ~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I 922 (987)
++. + .+.+-.+ +||. |-.. .-..=-+++-.++|++..++++++||.+|. .|....
T Consensus 206 ~~~------------~-~~~d~vl------iDta-G~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~~--- 260 (328)
T 3e70_C 206 HAK------------A-RGIDVVL------IDTA-GRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVEQ--- 260 (328)
T ss_dssp HHH------------H-HTCSEEE------EEEC-CSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHHH---
T ss_pred HHH------------h-ccchhhH------Hhhc-cchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHHH---
Confidence 431 0 0110000 1111 1000 001123455569999999999999996665 322211
Q ss_pred HHHHHHHcCCCeEEEEecCchhh---------h-ccCEEEEEeCCEEE
Q 001980 923 QEALERLMRGRTTVLVAHRLSTI---------R-GVDCIGVVQDGRIV 960 (987)
Q Consensus 923 ~~~l~~~~~~~TvI~IaHRl~ti---------~-~~D~Iivl~~G~iv 960 (987)
.+.+.+ ..+.|+|++||--.+. . .--.|..+..|+-+
T Consensus 261 ~~~~~~-~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 261 ARQFNE-AVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHH-HSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHHH-hcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 122222 1378999999943221 1 12468888888754
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-12 Score=145.80 Aligned_cols=137 Identities=18% Similarity=0.278 Sum_probs=80.9
Q ss_pred EEEEcCCCCChHHHHHHHhc-cCCCCCceEEECCccCCCCCHHHHhcccEEEccccccc-cccHHHHhccCCCCCCHHHH
Q 001980 776 QALVGASGSGKSSVIALIER-FYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALF-AASIFDNIAYGKEGATEAEV 853 (987)
Q Consensus 776 vaIVG~sGsGKSTL~~lL~r-l~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF-~gTIreNL~~~~~~~sd~ei 853 (987)
+.|+||+|+||||++++|.+ ++.|..|.|.++|.++..... -+..+++++|++++. +.+- .+ ......+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~ 109 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD-----MG--NNDRIVI 109 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh-----cC--CcchHHH
Confidence 99999999999999999999 899999999999988764332 267899999998753 2110 01 0112233
Q ss_pred HHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCC
Q 001980 854 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR 933 (987)
Q Consensus 854 ~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~ 933 (987)
.+.++.+.. . .+++..+ .||| +..+|+++|||||++ ||.++...+.+.+++..+++
T Consensus 110 ~~~i~~~~~-----~--~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~ 165 (354)
T 1sxj_E 110 QELLKEVAQ-----M--EQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNI 165 (354)
T ss_dssp HHHHHHHTT-----T--TC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTE
T ss_pred HHHHHHHHH-----h--ccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCC
Confidence 333332211 0 1111111 4666 788999999999999 99999999999999877788
Q ss_pred eEEEEecCchhh
Q 001980 934 TTVLVAHRLSTI 945 (987)
Q Consensus 934 TvI~IaHRl~ti 945 (987)
++|++||+++.+
T Consensus 166 ~~Il~t~~~~~l 177 (354)
T 1sxj_E 166 RLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEESCSCSS
T ss_pred EEEEEeCCHHHH
Confidence 999999998654
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=6e-14 Score=156.18 Aligned_cols=177 Identities=13% Similarity=0.118 Sum_probs=114.8
Q ss_pred EEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC----HHHHhcc
Q 001980 102 FKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ----LRWLRDQ 177 (987)
Q Consensus 102 ~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~~~~ 177 (987)
++|+++.|+. ..+|+++||++++|++++|+|+||||||||++.|+|++.|++|+|.+.|.++.... ....+.+
T Consensus 32 ~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 32 SRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp CSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred eCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 3455556642 34899999999999999999999999999999999999999999999998875432 1234567
Q ss_pred eEEEcCCCCCch----------h---cHHHHHh-c---CCC---------CCCHHHHHHHHH-------------HHhHH
Q 001980 178 IGLVNQEPALFA----------T---TILENIL-Y---GKP---------EATMAEVEAAAS-------------AANAH 218 (987)
Q Consensus 178 i~~v~Q~~~l~~----------~---tv~eni~-~---~~~---------~~~~~~~~~~~~-------------~~~~~ 218 (987)
++|++|++.+|. | +++|.+. + +.+ ......+.+.+. ...+.
T Consensus 109 i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~ 188 (337)
T 2qm8_A 109 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIK 188 (337)
T ss_dssp STTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CC
T ss_pred heeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHH
Confidence 999999998874 2 2333321 0 000 000011100000 00000
Q ss_pred HHHHhCCCCC-cccccC-CCCCCChHHHHHHHHHHHhcc------CCCEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 001980 219 SFITLLPNGY-STQVGE-RGVQLSGGQKQRIAIARAMLK------NPKILLLDEATSALDAGSESIVQEALDRLM 285 (987)
Q Consensus 219 ~~~~~~~~g~-~t~~~~-~g~~LSgGqkqRialARal~~------~~~illlDEpts~LD~~~~~~i~~~l~~~~ 285 (987)
+.+...|.-+ -+..+. ....+|+|++|++..|++++. +|+++. +|++|......+++.|.++.
T Consensus 189 ~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 189 KGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp TTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 0000111100 011121 123579999999999999987 688876 99999999999999987753
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.28 E-value=6.8e-14 Score=137.64 Aligned_cols=87 Identities=13% Similarity=0.072 Sum_probs=70.5
Q ss_pred EeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEc
Q 001980 103 KNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVN 182 (987)
Q Consensus 103 ~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 182 (987)
+|++++|+. ..+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++... ...+ .|++
T Consensus 11 ~~~~~~~g~---~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~ 81 (158)
T 1htw_A 11 EFSMLRFGK---KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMI 81 (158)
T ss_dssp HHHHHHHHH---HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEE
T ss_pred HHHHHHHHH---HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccce
Confidence 355666752 35899999999999999999999999999999999999 9999999999876421 0111 2899
Q ss_pred CCCCCchhcHHHHHhc
Q 001980 183 QEPALFATTILENILY 198 (987)
Q Consensus 183 Q~~~l~~~tv~eni~~ 198 (987)
|++.++.-|+.||+.+
T Consensus 82 q~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 82 YHFDLYRLADPEELEF 97 (158)
T ss_dssp EEEECTTCSCTTHHHH
T ss_pred eccccccCCcHHHHHH
Confidence 9998886699999853
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-12 Score=143.41 Aligned_cols=121 Identities=13% Similarity=0.092 Sum_probs=81.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-CCccEEEEC-CEeCCCCCHHHHhcceEEEcCCCCCchh-cHH
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-PNAGHVLLD-NVDIKTLQLRWLRDQIGLVNQEPALFAT-TIL 193 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-~~~G~i~~~-g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~ 193 (987)
-++++++. .+|++++|+||||||||||+++|+|+.. |..|+|.++ |.+.. ...+..+++++|++++++. +++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 46677764 4899999999999999999999999999 999999987 65432 1234579999999988865 999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 194 ENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 194 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
++-+. ....+++... ..++++.+ |+....+....+|| ||+||++||+++
T Consensus 280 e~~l~---~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EFGLW---HLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TCCCC---CCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred Hhhhc---CCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 96332 2233333221 12333433 55555667778999 999999999975
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.5e-12 Score=145.48 Aligned_cols=147 Identities=18% Similarity=0.257 Sum_probs=95.7
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHH--HhccCCCCC-----ceEEECCccC-CCCCHHHHhcccEEEccccccccccHHHH
Q 001980 769 RIRAGQSQALVGASGSGKSSVIAL--IERFYDPTA-----GKVMIDGKDI-RRLNLKSLRLKIGLVQQEPALFAASIFDN 840 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~l--L~rl~~p~~-----G~I~idG~di-~~i~l~~lR~~i~~VpQdp~lF~gTIreN 840 (987)
-|++|+.++|+||+|||||||++. +....+++. +.|+||+.+. +...+..+++++++.|| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 588999999999999999999994 456666543 4899999763 22223345566777665 56677
Q ss_pred hccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH
Q 001980 841 IAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL--KNPAILLLDEATSALDAES 918 (987)
Q Consensus 841 L~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll--r~p~ILlLDEaTS~LD~~t 918 (987)
+.+..+ .+-+ .+.+++.-+++++ .+|++|++||+|+.+|.+.
T Consensus 247 i~~~~~-~~~~-----------------------------------~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARA-YNAD-----------------------------------HQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEEC-CSHH-----------------------------------HHHHHHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEecc-CChH-----------------------------------HHHHHHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 755432 1111 1223333333333 4699999999999999764
Q ss_pred H------------HHHHHHHHHHc--CCCeEEEEecCch-------------------hhhc-cCEEEEEeCCE
Q 001980 919 E------------CVLQEALERLM--RGRTTVLVAHRLS-------------------TIRG-VDCIGVVQDGR 958 (987)
Q Consensus 919 e------------~~I~~~l~~~~--~~~TvI~IaHRl~-------------------ti~~-~D~Iivl~~G~ 958 (987)
. ..+.+.|+++. .++|||+|+|-.. .+.+ +|.+++|+.|+
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 4 45566666554 3899999999832 1233 69999998763
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.3e-15 Score=168.36 Aligned_cols=129 Identities=19% Similarity=0.151 Sum_probs=87.5
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCC----CHHHHhcceEEEc---------C
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL----QLRWLRDQIGLVN---------Q 183 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~----~~~~~~~~i~~v~---------Q 183 (987)
+|+++ + .++|++++|+||||||||||+++|+|+++|++|+|.+.+.++... +...++.++++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 45555 3 378999999999999999999999999999999999988776421 1112344566655 9
Q ss_pred CCCCc--h-----hcHHHHHhcCCC---------CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHH
Q 001980 184 EPALF--A-----TTILENILYGKP---------EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247 (987)
Q Consensus 184 ~~~l~--~-----~tv~eni~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRi 247 (987)
+|.++ . .|+++|+.++.. ..+..+....+... |+.... ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~l-----------gl~~~~--~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDM-----------GIEPFL--ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHH-----------TCCHHH--HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHc-----------CCcHHH--HHHHHHHHHHHH-
Confidence 99763 2 489999875311 11112222222211 222211 345799999999
Q ss_pred HHHHHhccCCCEEEE
Q 001980 248 AIARAMLKNPKILLL 262 (987)
Q Consensus 248 alARal~~~~~illl 262 (987)
|||+|+.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999999763
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.25 E-value=8.5e-12 Score=137.56 Aligned_cols=142 Identities=15% Similarity=0.124 Sum_probs=96.2
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHH----HHhc--ceEEEcCCCCCchh-cHHHHH
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR----WLRD--QIGLVNQEPALFAT-TILENI 196 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~----~~~~--~i~~v~Q~~~l~~~-tv~eni 196 (987)
..++|++++|+||||||||||++.|+|+++|++|+|.+.|.|+...... .+++ .+.|++|++.+++. +++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999998765532 2333 46699999988865 999999
Q ss_pred hcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcc-cccCCCC-C-CChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHH
Q 001980 197 LYGKPEATMAEVEAAASAANAHSFITLLPNGYST-QVGERGV-Q-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 273 (987)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~~~~g~-~-LSgGqkqRialARal~~~~~illlDEpts~LD~~~ 273 (987)
.++.. . +.+. .+...|. . -.-=.++--.++|++..++++++||.++. .
T Consensus 205 ~~~~~-------------~-----------~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~---- 255 (328)
T 3e70_C 205 QHAKA-------------R-----------GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-N---- 255 (328)
T ss_dssp HHHHH-------------H-----------TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-T----
T ss_pred HHHHh-------------c-----------cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-H----
Confidence 75310 0 1110 0111110 0 01112233348999998888888885554 2
Q ss_pred HHHHHHHHHhhh--CCCeEEEEcCC
Q 001980 274 ESIVQEALDRLM--VGRTTVVVAHR 296 (987)
Q Consensus 274 ~~~i~~~l~~~~--~~~tvi~vtH~ 296 (987)
.+.+.++.+. .+.|.|++||-
T Consensus 256 --~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 256 --AIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --HHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHhcCCCEEEEeCc
Confidence 3333333333 37899999994
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.25 E-value=7.9e-12 Score=138.44 Aligned_cols=122 Identities=13% Similarity=0.086 Sum_probs=79.4
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-CCCceEEEC-CccCCCCCHHHHhcccEEEccccccccc-cHH
Q 001980 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-PTAGKVMID-GKDIRRLNLKSLRLKIGLVQQEPALFAA-SIF 838 (987)
Q Consensus 762 vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-p~~G~I~id-G~di~~i~l~~lR~~i~~VpQdp~lF~g-TIr 838 (987)
-++++++. .+|++++|+|+||||||||+++|.|+.. |..|+|.++ |.+.. ...+..++++||++.+++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 36777764 4899999999999999999999999999 999999997 76642 2346789999999988754 899
Q ss_pred HHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 839 DNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 839 eNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
++-. ...+.+++.+ .+.++...+ |+.........++| ||+||++||++++
T Consensus 280 e~~l---~~l~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 280 EFGL---WHLEPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp TCCC---CCCCHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred Hhhh---cCCCHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 8632 2345555432 222333322 22222233345799 9999999999863
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.4e-12 Score=144.35 Aligned_cols=146 Identities=17% Similarity=0.227 Sum_probs=91.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHH--HHHcCCCCCcc-----EEEECCEeCC-CCCHHHHhcceEEEcCCCCCchhcHHHH
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVS--LIERFYDPNAG-----HVLLDNVDIK-TLQLRWLRDQIGLVNQEPALFATTILEN 195 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~--~l~g~~~~~~G-----~i~~~g~~~~-~~~~~~~~~~i~~v~Q~~~l~~~tv~en 195 (987)
-|++|++++|+||||||||||++ ++.+..+++.| .+++++.+.. ......+.+++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 47899999999999999999999 44677776444 7888876521 1112223344554433 67777
Q ss_pred HhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCCCCCCChHH
Q 001980 196 ILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM--LKNPKILLLDEATSALDAGS 273 (987)
Q Consensus 196 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal--~~~~~illlDEpts~LD~~~ 273 (987)
+.+..+.. .+.. .+.+.-++.+ -.+|+++++|||++.+|+..
T Consensus 247 i~~~~~~~-~~~~-----------------------------------~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARAYN-ADHQ-----------------------------------LRLLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEECCS-HHHH-----------------------------------HHHHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEeccCC-hHHH-----------------------------------HHHHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 76654321 1111 1111111111 24799999999999999753
Q ss_pred H------------HHHHHHHHhhh--CCCeEEEEcCCCC-------------------cccc-CCEEEEEeCC
Q 001980 274 E------------SIVQEALDRLM--VGRTTVVVAHRLS-------------------TIRN-VDTVAVIQQG 312 (987)
Q Consensus 274 ~------------~~i~~~l~~~~--~~~tvi~vtH~~~-------------------~~~~-~d~i~~l~~G 312 (987)
. ..+.+.|+++. .+.|||+|+|... .+.+ +|.+++|+++
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 2 45666666664 3899999999832 1233 6888888765
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.24 E-value=9.2e-12 Score=121.43 Aligned_cols=92 Identities=22% Similarity=0.265 Sum_probs=71.8
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCc--eEEECCccCCCCCHHHHhcccEEEccccccccccHHH
Q 001980 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG--KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 839 (987)
Q Consensus 762 vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G--~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIre 839 (987)
+|+++ +|+.++|+|++|||||||++++.+.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 57777 8999999999999999999999999987 57 666666543221
Q ss_pred HhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 001980 840 NIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 919 (987)
Q Consensus 840 NL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te 919 (987)
+++.+|++|+||||++ +|...+
T Consensus 79 ---------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~ 100 (149)
T 2kjq_A 79 ---------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQ 100 (149)
T ss_dssp ---------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHH
T ss_pred ---------------------------------------------------------HHHhCCCEEEEeCccc-cChHHH
Confidence 2367899999999998 665558
Q ss_pred HHHHHHHHHHc-CCCe-EEEEecCc
Q 001980 920 CVLQEALERLM-RGRT-TVLVAHRL 942 (987)
Q Consensus 920 ~~I~~~l~~~~-~~~T-vI~IaHRl 942 (987)
+.+.+.+.+.. +++| +|+++|+.
T Consensus 101 ~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 101 ALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCC
Confidence 88888887765 4677 77777753
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.5e-13 Score=144.81 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=96.5
Q ss_pred CCcEEEEEcCCCCChHHHHHHHh---ccCCCCCceEEECCccCCCCCHHHHhcccEEEcccccccc-ccHHHHhcc----
Q 001980 772 AGQSQALVGASGSGKSSVIALIE---RFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAY---- 843 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~---rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~-gTIreNL~~---- 843 (987)
++++++|+|++||||||++++|. |+..|+.|+|.++|.+.. ..++..+..++|++.++. .++.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999 999999999999887642 134556677788876554 478888743
Q ss_pred ---------CCCCCCHHHHHHHHHHcCch--hhHhhCCC-c-CCCccCCCCCCCChhHHHHHHHHHHH-ccCCCEEEEe-
Q 001980 844 ---------GKEGATEAEVVEAARAANVH--GFVSALPN-A-YKTPVGERGVQLSGGQKQRIAIARAV-LKNPAILLLD- 908 (987)
Q Consensus 844 ---------~~~~~sd~ei~~al~~a~l~--~~i~~lp~-g-ldt~vge~G~~LSgGQrQrlaLARAl-lr~p~ILlLD- 908 (987)
+.+ .+.++.....+..... -++. .|. - ++-........||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~-~~~~~~~~l~~~~~~~~vi~L~-~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~ 172 (246)
T 2bbw_A 102 RRGQHWLLDGFP-RTLGQAEALDKICEVDLVISLN-IPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDD 172 (246)
T ss_dssp CTTSCEEEESCC-CSHHHHHHHHTTCCCCEEEEEE-CCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCT
T ss_pred cCCCeEEEECCC-CCHHHHHHHHhhcCCCEEEEEE-CCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccc
Confidence 111 1222222111111110 0000 000 0 00001122345888 55 888 9999999999
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHHc
Q 001980 909 ---EATSALDAESECVLQEALERLM 930 (987)
Q Consensus 909 ---EaTS~LD~~te~~I~~~l~~~~ 930 (987)
|||+++|..+...+++.++++.
T Consensus 173 ~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 173 VTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999998764
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.23 E-value=7.6e-12 Score=122.01 Aligned_cols=91 Identities=18% Similarity=0.277 Sum_probs=69.0
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc--EEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHH
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG--HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILE 194 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G--~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~e 194 (987)
+|+++ +|+.++|+||+|||||||+++++|++.+ +| .+++++.++.. .
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~--------------------~----- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL--------------------T----- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC--------------------C-----
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH--------------------H-----
Confidence 46666 8999999999999999999999999877 46 44444321110 0
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHH
Q 001980 195 NILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274 (987)
Q Consensus 195 ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~ 274 (987)
+++.+|++|++|||++ +|...+
T Consensus 79 ---------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~ 100 (149)
T 2kjq_A 79 ---------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQ 100 (149)
T ss_dssp ---------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHH
T ss_pred ---------------------------------------------------------HHHhCCCEEEEeCccc-cChHHH
Confidence 3467899999999998 666668
Q ss_pred HHHHHHHHhhh-CCCe-EEEEcCC
Q 001980 275 SIVQEALDRLM-VGRT-TVVVAHR 296 (987)
Q Consensus 275 ~~i~~~l~~~~-~~~t-vi~vtH~ 296 (987)
+.+++.+..+. +|++ +|++||.
T Consensus 101 ~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 101 ALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCC
Confidence 88888887764 4788 7888885
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.6e-14 Score=165.84 Aligned_cols=172 Identities=15% Similarity=0.150 Sum_probs=111.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCch-hcHHH
Q 001980 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILE 194 (987)
Q Consensus 116 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~e 194 (987)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+--..+. ...++++.|...... .|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHHH
Confidence 46788999999999999999999999999999999999999999998865222211 235777777655222 26776
Q ss_pred HHhcC---CC------CCCHHHHHHHHHHHh-------------HHH---HHHhCCCCCccccc-------CCCCCCChH
Q 001980 195 NILYG---KP------EATMAEVEAAASAAN-------------AHS---FITLLPNGYSTQVG-------ERGVQLSGG 242 (987)
Q Consensus 195 ni~~~---~~------~~~~~~~~~~~~~~~-------------~~~---~~~~~~~g~~t~~~-------~~g~~LSgG 242 (987)
++... .| +.+..+...+.+... ..+ .+...|.|....+. .....+|||
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 66432 22 222223333332221 112 22222333332211 223458999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEE--EcCCCCcccc
Q 001980 243 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVV--VAHRLSTIRN 302 (987)
Q Consensus 243 qkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~--vtH~~~~~~~ 302 (987)
||||.++|. + | |++||+...+.+.+.+.++. .++|+++ +||+++.+..
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHH
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHH
Confidence 999987651 1 6 99999987776666666664 3788875 8999887654
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.20 E-value=6.8e-12 Score=141.29 Aligned_cols=138 Identities=15% Similarity=0.228 Sum_probs=79.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc-CCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCc-hhcHHHHHhcCCCCCCHHH
Q 001980 130 TVAVVGGSGSGKSTVVSLIER-FYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALF-ATTILENILYGKPEATMAE 207 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~~~ 207 (987)
.+.|+||+|+||||++++++| ++.|+.|.+.++|.+...... .+..+++++|.+++. +.+- .+. .....
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD-----MGN--NDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh-----cCC--cchHH
Confidence 389999999999999999999 789999999999977653222 256789999987642 1110 000 01111
Q ss_pred HHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCC
Q 001980 208 VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG 287 (987)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~ 287 (987)
+.+..+ +..... +++..+ .||| +..+|+++|+|||++ ||+.+.+.+.+.+.+...+
T Consensus 109 ~~~~i~-----~~~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 109 IQELLK-----EVAQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp HHHHHH-----HHTTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT
T ss_pred HHHHHH-----HHHHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCC
Confidence 222111 111111 122111 5676 778999999999999 9999999999999887778
Q ss_pred CeEEEEcCCCCcc
Q 001980 288 RTTVVVAHRLSTI 300 (987)
Q Consensus 288 ~tvi~vtH~~~~~ 300 (987)
.++|++||+++.+
T Consensus 165 ~~~Il~t~~~~~l 177 (354)
T 1sxj_E 165 IRLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEEESCSCSS
T ss_pred CEEEEEeCCHHHH
Confidence 8999999998765
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.3e-12 Score=128.31 Aligned_cols=112 Identities=14% Similarity=0.106 Sum_probs=75.8
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCC
Q 001980 122 SIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP 201 (987)
Q Consensus 122 ~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~ 201 (987)
+|++++|+.++|+||+|||||||++++++.+.|..|.. +.|+ +..+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~~---------~~~~~------ 78 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYFF---------DTKDL------ 78 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCEE---------EHHHH------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEEE---------EHHHH------
Confidence 46678899999999999999999999999987666521 1111 11111
Q ss_pred CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC-CCChHHHHHHHHH
Q 001980 202 EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS-ALDAGSESIVQEA 280 (987)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts-~LD~~~~~~i~~~ 280 (987)
...... .... +. .. -....+.+|++|+||||++ ++|+...+.+.+.
T Consensus 79 -------~~~~~~-----~~~~---~~----------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 79 -------IFRLKH-----LMDE---GK----------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp -------HHHHHH-----HHHH---TC----------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred -------HHHHHH-----HhcC---ch----------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 110000 0100 00 00 0122345999999999996 8999999999998
Q ss_pred HHhhh-CCCeEEEEcCCCCc
Q 001980 281 LDRLM-VGRTTVVVAHRLST 299 (987)
Q Consensus 281 l~~~~-~~~tvi~vtH~~~~ 299 (987)
+.... .++++|++||....
T Consensus 126 l~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHHHTTCEEEEECCCCSC
T ss_pred HHHHHHcCCCEEEEcCCChh
Confidence 87764 68999999998653
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=9.8e-12 Score=141.18 Aligned_cols=153 Identities=22% Similarity=0.229 Sum_probs=95.6
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhc
Q 001980 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIA 842 (987)
Q Consensus 763 L~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~ 842 (987)
-++++|+++.|+.|+|||++|||||||+++|.+..+ .+.+.+..++ ...+++|+|+.. ..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 489999999999999999999999999999999843 4555555443 456788887651 1112222221
Q ss_pred cCC-----CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 001980 843 YGK-----EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 917 (987)
Q Consensus 843 ~~~-----~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~ 917 (987)
+.. ..... ...+..+.+...=++-.+. +.++ .+||+||+||+++||+|..+|.||++ +.+|..
T Consensus 215 li~~a~~~~~L~~-~fl~~~era~~lL~vvDls---~~~~----~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGL-EFLRHIARTRVLLYVLDAA---DEPL----KTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCH-HHHHHHTSSSEEEEEEETT---SCHH----HHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhH-HHHHHHHHHHhhhEEeCCc---cCCH----HHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 100 00111 1112122221111111111 2222 35999999999999999999999999 999987
Q ss_pred HHHHHHHHHHHHc--CCCeEEEEec
Q 001980 918 SECVLQEALERLM--RGRTTVLVAH 940 (987)
Q Consensus 918 te~~I~~~l~~~~--~~~TvI~IaH 940 (987)
... ..+.+.+.. .+.+++.||.
T Consensus 283 ~~~-~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEE-AVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHH-HHHHHHHHHHTTTSCEEECCT
T ss_pred hHH-HHHHHHHHHHhcCCeEEEEEC
Confidence 663 334443332 3668887753
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.13 E-value=4e-12 Score=139.37 Aligned_cols=114 Identities=14% Similarity=0.100 Sum_probs=73.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE---CCEeCCCCCHHHHh-cceEEEcCCCCCc-----h-hcHH
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL---DNVDIKTLQLRWLR-DQIGLVNQEPALF-----A-TTIL 193 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~---~g~~~~~~~~~~~~-~~i~~v~Q~~~l~-----~-~tv~ 193 (987)
++.+|++++|+||||||||||+++|+ +.+|++|+|.+ +|.++..... ..+ ..+||++|+|.+. + -|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 44679999999999999999999999 99999999999 8988765432 222 3689999999653 3 388
Q ss_pred HHH--hcCC------------C-CCCHHHHHHHHHHHhHHHHHHhCCCCCcc-cccCCCCCCChHHHHHHHHHH
Q 001980 194 ENI--LYGK------------P-EATMAEVEAAASAANAHSFITLLPNGYST-QVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 194 eni--~~~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~~~~g~~LSgGqkqRialAR 251 (987)
||+ .|+. + ......+.++++.. |+.. ........|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~-----------~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNG-----------EISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTT-----------SSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcC-----------CCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888 4431 0 01112233333332 3332 233344579999999999987
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=5.3e-14 Score=152.14 Aligned_cols=143 Identities=15% Similarity=0.180 Sum_probs=99.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCC-CCchh-cHH
Q 001980 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEP-ALFAT-TIL 193 (987)
Q Consensus 116 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~-~l~~~-tv~ 193 (987)
.+++++++++++| ++|+||||||||||+++|+|++.+ |.|.++|.++........++.+++++|++ ..++. ++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 3789999999999 999999999999999999999887 79999998886654445566788999875 33433 666
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC------
Q 001980 194 ENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS------ 267 (987)
Q Consensus 194 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts------ 267 (987)
||+....+........ . ....+.+....|||||+||+.+++|+..+|++| |||+.
T Consensus 110 Deid~~~~~r~~~~~~-~----------------~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd 170 (274)
T 2x8a_A 110 DEVDALCPRRSDRETG-A----------------SVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD 170 (274)
T ss_dssp ETCTTTCC--------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred ehhhhhhcccCCCcch-H----------------HHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence 7776533211110000 0 000111122369999999999999999999974 99864
Q ss_pred ------CCChHHHHHHHHHH
Q 001980 268 ------ALDAGSESIVQEAL 281 (987)
Q Consensus 268 ------~LD~~~~~~i~~~l 281 (987)
--|...+..+++.+
T Consensus 171 ~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHH
Confidence 23556666666554
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-13 Score=146.85 Aligned_cols=143 Identities=17% Similarity=0.220 Sum_probs=104.6
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEcccc-ccc-cccHH
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEP-ALF-AASIF 838 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp-~lF-~gTIr 838 (987)
.+++++++.+++| ++|+||+|||||||+++|.+...+ |.|.++|.++.+......++++++++|++ ..+ .-++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4799999999999 999999999999999999999876 79999999998776677788899999986 333 23677
Q ss_pred HHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC------
Q 001980 839 DNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS------ 912 (987)
Q Consensus 839 eNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS------ 912 (987)
||++...+...+.+. ......+..+ + ..|||||+||..+++|+..+|++| |||..
T Consensus 110 Deid~~~~~r~~~~~------~~~~~~~~~~-------l----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd 170 (274)
T 2x8a_A 110 DEVDALCPRRSDRET------GASVRVVNQL-------L----TEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD 170 (274)
T ss_dssp ETCTTTCC---------------CTTHHHHH-------H----HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred ehhhhhhcccCCCcc------hHHHHHHHHH-------H----HhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence 888754332211110 0111222222 1 258999999999999999999985 99975
Q ss_pred ------CCCHHHHHHHHHHH
Q 001980 913 ------ALDAESECVLQEAL 926 (987)
Q Consensus 913 ------~LD~~te~~I~~~l 926 (987)
--|.+....|.+.+
T Consensus 171 ~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHH
Confidence 23566666666554
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=7.8e-13 Score=145.68 Aligned_cols=140 Identities=17% Similarity=0.215 Sum_probs=97.0
Q ss_pred cccEEEEeEEEECCCCCCccceeeeeEEE-------------------eCCcEEEEEcCCCCChHHHHHHHhccCC--CC
Q 001980 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRI-------------------RAGQSQALVGASGSGKSSVIALIERFYD--PT 800 (987)
Q Consensus 742 ~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I-------------------~~Ge~vaIVG~sGsGKSTL~~lL~rl~~--p~ 800 (987)
++.|+++||++.|. ++++++|+.+ ++|+++||+|+||||||||+++|.+++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 46799999999992 5899999988 8999999999999999999999999998 99
Q ss_pred CceEEE---CCccCCCCCHHHHhcccEEEccccccc-cccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCc
Q 001980 801 AGKVMI---DGKDIRRLNLKSLRLKIGLVQQEPALF-AASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTP 876 (987)
Q Consensus 801 ~G~I~i---dG~di~~i~l~~lR~~i~~VpQdp~lF-~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~ 876 (987)
+|+|.+ ||.+.. ...|+.++++ |+..++ .-|+.+|+.+.. .+ ..-.+.+ ..| -++
T Consensus 110 ~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~----------~l--~~~~~~i-~~P-~~~-- 168 (308)
T 1sq5_A 110 HRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFVS----------DL--KSGVPNV-TAP-VYS-- 168 (308)
T ss_dssp CCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHHH----------HH--TTTCSCE-EEC-CEE--
T ss_pred CCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHHH----------HH--hCCCCce-ecc-ccc--
Confidence 999999 998752 2456778888 766543 346777764310 00 0000000 011 111
Q ss_pred cCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 001980 877 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 916 (987)
Q Consensus 877 vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~ 916 (987)
.+.+ +|+..+.+.+.+++++|+|.|....|.
T Consensus 169 -------~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 169 -------HLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp -------TTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred -------cccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 1222 233333355678999999999887763
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-11 Score=136.13 Aligned_cols=114 Identities=16% Similarity=0.124 Sum_probs=80.2
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEE---CCccCCCCCHHHHh-cccEEEcccccc------ccccHH
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI---DGKDIRRLNLKSLR-LKIGLVQQEPAL------FAASIF 838 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~i---dG~di~~i~l~~lR-~~i~~VpQdp~l------F~gTIr 838 (987)
.+.+|+.++|+|+||||||||+++|. +.+|..|+|.+ +|.++..... ..+ +.+++|+|+|-+ ..-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 34569999999999999999999999 99999999999 9998876442 223 379999999954 24578
Q ss_pred HHh--ccC--------CCC-----CCHHHHHHHHHHcCchh-hHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 839 DNI--AYG--------KEG-----ATEAEVVEAARAANVHG-FVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 839 eNL--~~~--------~~~-----~sd~ei~~al~~a~l~~-~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+|+ .++ ..+ .....+.++++..++.+ ...+.| ..|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 888 443 111 12346788888888875 444333 248998888999987
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=6.3e-11 Score=119.65 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=76.0
Q ss_pred eEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCC
Q 001980 767 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE 846 (987)
Q Consensus 767 sl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~ 846 (987)
+|.+++|+.++|+||+|+|||||++++.+.+.|.+|... .++ +..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~------------------~~~---------~~~-------- 76 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG------------------YFF---------DTK-------- 76 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC------------------CEE---------EHH--------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE------------------EEE---------EHH--------
Confidence 466788999999999999999999999999876666310 010 111
Q ss_pred CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHH
Q 001980 847 GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS-ALDAESECVLQEA 925 (987)
Q Consensus 847 ~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS-~LD~~te~~I~~~ 925 (987)
++.+.+... ... + ... -....+.+|++|+||||++ ++|+.....+.+.
T Consensus 77 -----~~~~~~~~~-----~~~---~----------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 77 -----DLIFRLKHL-----MDE---G----------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp -----HHHHHHHHH-----HHH---T----------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred -----HHHHHHHHH-----hcC---c----------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 111111110 000 0 000 1122345999999999996 8999999999999
Q ss_pred HHHHc-CCCeEEEEecCch
Q 001980 926 LERLM-RGRTTVLVAHRLS 943 (987)
Q Consensus 926 l~~~~-~~~TvI~IaHRl~ 943 (987)
+.+.. +++|+|++||+..
T Consensus 126 l~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHcCCCEEEEcCCCh
Confidence 98765 6899999999874
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.6e-13 Score=143.31 Aligned_cols=176 Identities=14% Similarity=0.107 Sum_probs=74.4
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHh-ccC------------CCCCceEEECCccCCCCCHHHHhcccEEEcc
Q 001980 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIE-RFY------------DPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQ 828 (987)
Q Consensus 762 vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~-rl~------------~p~~G~I~idG~di~~i~l~~lR~~i~~VpQ 828 (987)
-.+++||++++|+.+||+||||||||||+++|. +++ +|..|.+ +|+++...+...++.. +.+
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~~ 90 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CSN 90 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HHT
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hhc
Confidence 578999999999999999999999999999999 998 5555544 4544443343333321 123
Q ss_pred ccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH-HHHH-HHccCCCEEE
Q 001980 829 EPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI-AIAR-AVLKNPAILL 906 (987)
Q Consensus 829 dp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl-aLAR-Allr~p~ILl 906 (987)
+.+++.+++..|+ ++.+. +++.++++.... .+ +|.++. -...-++++ .-++ .++..|+..+
T Consensus 91 ~~~~~~~~~~~~~-~~~~~---~~i~~~~~~~~~--vi------ld~~~~-----g~~~~~~~~~~~~~~v~v~~~~~~~ 153 (231)
T 3lnc_A 91 GEIIEHAEVFGNF-YGVPR---KNLEDNVDKGVS--TL------LVIDWQ-----GAFKFMEMMREHVVSIFIMPPSMEE 153 (231)
T ss_dssp TCEEEEEEETTEE-EEEEC---TTHHHHHHHTCE--EE------EECCHH-----HHHHHHHHSGGGEEEEEEECSCHHH
T ss_pred Cceehhhhhcccc-CCCCH---HHHHHHHHcCCe--EE------EEcCHH-----HHHHHHHhcCCCeEEEEEECCcHHH
Confidence 3333344444444 33222 233333333110 01 010000 001113333 2222 3456778888
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHcC------CCeEEEEecCchhh-hccCEEEEEeCCEE
Q 001980 907 LDEATSALDAESECVLQEALERLMR------GRTTVLVAHRLSTI-RGVDCIGVVQDGRI 959 (987)
Q Consensus 907 LDEaTS~LD~~te~~I~~~l~~~~~------~~TvI~IaHRl~ti-~~~D~Iivl~~G~i 959 (987)
+||..++.|..+++.+++.|+.... ..+.+++.|.++.+ ...++++....++.
T Consensus 154 l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~ 213 (231)
T 3lnc_A 154 LRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKT 213 (231)
T ss_dssp HHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBG
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhcc
Confidence 8999999999999888877765432 34555555655433 23344443333443
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=8e-13 Score=145.57 Aligned_cols=139 Identities=16% Similarity=0.198 Sum_probs=96.0
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEE-------------------eCCcEEEEEcCCCccHHHHHHHHHcCCC--CCc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFF-------------------PAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA 156 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i-------------------~~G~~~~ivG~sGsGKSTLl~~l~g~~~--~~~ 156 (987)
..|+++||++.|. ++++++++.+ ++|++++|+||||||||||+++|.|++. |++
T Consensus 36 ~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 36 EDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp TTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred cccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 4588999999993 4889999988 8999999999999999999999999998 999
Q ss_pred cEEEE---CCEeCCCCCHHHHhcceEEEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccc
Q 001980 157 GHVLL---DNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQV 232 (987)
Q Consensus 157 G~i~~---~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 232 (987)
|+|.+ ||.... . ..++.++++ |+..++.. |+.+|+.+.. .+..|.. .+
T Consensus 111 G~i~vi~~d~~~~~---~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~----------------------~l~~~~~-~i 162 (308)
T 1sq5_A 111 RRVELITTDGFLHP---N-QVLKERGLM-KKKGFPESYDMHRLVKFVS----------------------DLKSGVP-NV 162 (308)
T ss_dssp CCEEEEEGGGGBCC---H-HHHHHHTCT-TCTTSGGGBCHHHHHHHHH----------------------HHTTTCS-CE
T ss_pred CeEEEEecCCccCc---H-HHHHhCCEe-ecCCCCCCccHHHHHHHHH----------------------HHhCCCC-ce
Confidence 99999 886642 2 334568888 87666544 7777765421 0001111 00
Q ss_pred cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCh
Q 001980 233 GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271 (987)
Q Consensus 233 ~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~ 271 (987)
.......+.+ +|+..+.+...+++++|+|.|....+.
T Consensus 163 ~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 163 TAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp EECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred eccccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 0001111222 333333355678999999999988774
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-10 Score=125.05 Aligned_cols=142 Identities=18% Similarity=0.159 Sum_probs=101.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
+.++++++.|... + ++++|+ +|+.++++|++|+||||++..|.+++.+.+|+|.+.+.|+..-...+
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~------ 143 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE------ 143 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH------
Confidence 5566777788422 1 678888 99999999999999999999999999999999999998876421110
Q ss_pred EEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 001980 825 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 904 (987)
Q Consensus 825 ~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~I 904 (987)
++....+..++.- +|.+ ..-...+-||.+|+++..+++++
T Consensus 144 ---------------------------ql~~~~~~~~l~~----~~~~---------~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 144 ---------------------------QLRLLGEKVGVPV----LEVM---------DGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp ---------------------------HHHHHHHHHTCCE----EECC---------TTCCHHHHHHHHHHHHHHHTCCE
T ss_pred ---------------------------HHHHhcccCCeEE----EEcC---------CCCCHHHHHHHHHHHHHhCCCCE
Confidence 0000111122211 1111 11234456789999998899999
Q ss_pred EEEeCC-CCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Q 001980 905 LLLDEA-TSALDAESECVLQEALERLMRGRTTVLVA 939 (987)
Q Consensus 905 LlLDEa-TS~LD~~te~~I~~~l~~~~~~~TvI~Ia 939 (987)
+|+||| |+++|...-..+.+..+....+.+++++.
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 999999 99999988888888877766666766654
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=4.5e-11 Score=135.72 Aligned_cols=154 Identities=19% Similarity=0.176 Sum_probs=91.1
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHh
Q 001980 118 FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENIL 197 (987)
Q Consensus 118 l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~ 197 (987)
-++++|+++.|+.++|+|+||||||||+++|+|..+ .+.+.+...+. ..++++.|+.. ..-++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl~-----p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTLS-----PNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSSC-----CEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccceec-----ceeeEEEecCc-ceEEEEeccc
Confidence 379999999999999999999999999999999843 34444433322 24666666530 0112222211
Q ss_pred cCCC-----CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChH
Q 001980 198 YGKP-----EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272 (987)
Q Consensus 198 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~ 272 (987)
+... .... ...+..+.+ ...+..+ +.. .+...+||+||+||+++|++|..+|.++++ +.+|..
T Consensus 215 li~~a~~~~~L~~-~fl~~~era--~~lL~vv--Dls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGL-EFLRHIART--RVLLYVL--DAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCH-HHHHHHTSS--SEEEEEE--ETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhH-HHHHHHHHH--HhhhEEe--CCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 1100 0111 111100000 0001110 010 223346999999999999999999999999 999998
Q ss_pred HHHHHHHHHHh-hh-CCCeEEEEcCC
Q 001980 273 SESIVQEALDR-LM-VGRTTVVVAHR 296 (987)
Q Consensus 273 ~~~~i~~~l~~-~~-~~~tvi~vtH~ 296 (987)
... ..+.+.+ +. .+.+++.+|..
T Consensus 283 ~~~-~~~~l~~~l~~~g~~vi~iSA~ 307 (416)
T 1udx_A 283 EEE-AVKALADALAREGLAVLPVSAL 307 (416)
T ss_dssp CHH-HHHHHHHHHHTTTSCEEECCTT
T ss_pred hHH-HHHHHHHHHHhcCCeEEEEECC
Confidence 663 3333433 32 36677777653
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=7.4e-12 Score=131.53 Aligned_cols=128 Identities=16% Similarity=0.176 Sum_probs=102.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccC---CCCCceEEE--------CCccCCC-CCHHHHhcccEEEcccc------cccc
Q 001980 773 GQSQALVGASGSGKSSVIALIERFY---DPTAGKVMI--------DGKDIRR-LNLKSLRLKIGLVQQEP------ALFA 834 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl~---~p~~G~I~i--------dG~di~~-i~l~~lR~~i~~VpQdp------~lF~ 834 (987)
+.+++|+|++||||||++++|.+.+ .++.|.|.. +|.++.+ ....++++++++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5789999999999999999999877 778899888 7887763 56778899999999987 4566
Q ss_pred ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCcc-CCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCC
Q 001980 835 ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPV-GERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 912 (987)
Q Consensus 835 gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~v-ge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS 912 (987)
.++.+++. ++++..++..+..++++.....+..+.+ .++|.-++|+ .++++++++++++|+.+++.
T Consensus 85 ~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 85 EDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp EECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred eeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 67888863 5688889999999998887655555444 2456677876 46677889999999988753
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.96 E-value=8.5e-10 Score=120.33 Aligned_cols=98 Identities=16% Similarity=0.288 Sum_probs=73.0
Q ss_pred eeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCC
Q 001980 766 FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK 845 (987)
Q Consensus 766 vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~ 845 (987)
+++..++|+.++|+|++||||||++..|.+.+.+.+|+|.+.+.|+.... ..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~---------------------a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA---------------------AI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH---------------------HH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH---------------------HH-------
Confidence 34456789999999999999999999999999999899999887753210 11
Q ss_pred CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH---HHHHHHccCCCEEEEeCCCC
Q 001980 846 EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI---AIARAVLKNPAILLLDEATS 912 (987)
Q Consensus 846 ~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl---aLARAllr~p~ILlLDEaTS 912 (987)
+++...++..++.- + ...|+|+.|++ +|+||+.++++++|+|||..
T Consensus 149 -----eqL~~~~~~~gl~~------------~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 -----EQLKIWGERVGATV------------I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -----HHHHHHHHHHTCEE------------E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -----HHHHHHHHHcCCcE------------E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 12222233333211 1 13588999999 99999999999999999984
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.95 E-value=6.9e-11 Score=129.55 Aligned_cols=94 Identities=19% Similarity=0.177 Sum_probs=61.1
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE---CCEeCCCCCHHHHhcceEEEcCCCC-------------
Q 001980 123 IFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL---DNVDIKTLQLRWLRDQIGLVNQEPA------------- 186 (987)
Q Consensus 123 l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~---~g~~~~~~~~~~~~~~i~~v~Q~~~------------- 186 (987)
|++.+|++++|+||||||||||+++|+|+.+|++|+|.+ +|.++.........+.++|++|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456689999999999999999999999999999999999 8988865442111236899999985
Q ss_pred ---Cchh-cHHHHHhcCCC---CCCHHHHHHHHHHHhH
Q 001980 187 ---LFAT-TILENILYGKP---EATMAEVEAAASAANA 217 (987)
Q Consensus 187 ---l~~~-tv~eni~~~~~---~~~~~~~~~~~~~~~~ 217 (987)
+|+. |+ +|+.|+.- .....++.++++..++
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L 280 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEI 280 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSS
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCC
Confidence 3554 88 99988531 1223456666666555
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.4e-10 Score=130.11 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=56.3
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH
Q 001980 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL 816 (987)
Q Consensus 746 ~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l 816 (987)
.+.++++.+ ..+|+|+||+|++ |.+||+||||||||||+++|.|+++|++|+|.++|.++...+.
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 72 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTS 72 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCch
Confidence 455665533 1379999999999 9999999999999999999999999999999999999876543
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-10 Score=127.18 Aligned_cols=102 Identities=19% Similarity=0.152 Sum_probs=68.0
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEE---CCccCCCCCHHHHhcccEEEccccc-------------
Q 001980 768 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI---DGKDIRRLNLKSLRLKIGLVQQEPA------------- 831 (987)
Q Consensus 768 l~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~i---dG~di~~i~l~~lR~~i~~VpQdp~------------- 831 (987)
|++.+|+.++|+|+||||||||+++|.|+..|++|+|.+ +|.++.........+++++|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 345679999999999999999999999999999999999 9999876542111246999999985
Q ss_pred ---cc-cccHHHHhccCCC---CCCHHHHHHHHHHcCch-hhHhhCC
Q 001980 832 ---LF-AASIFDNIAYGKE---GATEAEVVEAARAANVH-GFVSALP 870 (987)
Q Consensus 832 ---lF-~gTIreNL~~~~~---~~sd~ei~~al~~a~l~-~~i~~lp 870 (987)
+| .-|+ +|+.++.. ...+..+.++++..++. +...+.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 34 3477 88887531 12245688999999994 5555544
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.94 E-value=6.8e-13 Score=140.01 Aligned_cols=145 Identities=17% Similarity=0.165 Sum_probs=56.6
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-cCCCCCccEEEECCEeCCCCCHH-HHhcceEEEcCCCCCchh-cHH
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIE-RFYDPNAGHVLLDNVDIKTLQLR-WLRDQIGLVNQEPALFAT-TIL 193 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~-g~~~~~~G~i~~~g~~~~~~~~~-~~~~~i~~v~Q~~~l~~~-tv~ 193 (987)
..+++||++++|++++|+||||||||||+++|+ |++++. ..+.++...++. .....+.|.+|++..|.. +..
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~ 90 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-----VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSN 90 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----CE-----EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-----ccccccCCCCCCccccCCCeEEEecHHHhhhhhhc
Confidence 468999999999999999999999999999999 998431 222222111110 001234567776655543 444
Q ss_pred HHHhc---------CCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCCh--HHHHHH-HHHH-HhccCCCEE
Q 001980 194 ENILY---------GKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSG--GQKQRI-AIAR-AMLKNPKIL 260 (987)
Q Consensus 194 eni~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSg--GqkqRi-alAR-al~~~~~il 260 (987)
+|+.. +.+. +.+.+..+. |....+.- .+.| .-+++. .-++ .++..|+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~---~~i~~~~~~------------~~~vild~---~~~g~~~~~~~~~~~~~~v~v~~~~~~ 152 (231)
T 3lnc_A 91 GEIIEHAEVFGNFYGVPR---KNLEDNVDK------------GVSTLLVI---DWQGAFKFMEMMREHVVSIFIMPPSME 152 (231)
T ss_dssp TCEEEEEEETTEEEEEEC---TTHHHHHHH------------TCEEEEEC---CHHHHHHHHHHSGGGEEEEEEECSCHH
T ss_pred CceehhhhhccccCCCCH---HHHHHHHHc------------CCeEEEEc---CHHHHHHHHHhcCCCeEEEEEECCcHH
Confidence 44431 1111 112222111 11111110 1111 113333 1122 235677778
Q ss_pred EEeCCCCCCChHHHHHHHHHHHhh
Q 001980 261 LLDEATSALDAGSESIVQEALDRL 284 (987)
Q Consensus 261 llDEpts~LD~~~~~~i~~~l~~~ 284 (987)
++||++.+.|..+++.+.+.+...
T Consensus 153 ~l~~Rl~~R~~~~~~~i~~rl~~~ 176 (231)
T 3lnc_A 153 ELRRRLCGRRADDSEVVEARLKGA 176 (231)
T ss_dssp HHHHC--------------CHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHH
Confidence 888999999988877777776544
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-10 Score=124.49 Aligned_cols=99 Identities=16% Similarity=0.151 Sum_probs=76.9
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHh---ccCCCCCceEE--------ECCccC-CCCCHHHHhcccEEEcc
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIE---RFYDPTAGKVM--------IDGKDI-RRLNLKSLRLKIGLVQQ 828 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~---rl~~p~~G~I~--------idG~di-~~i~l~~lR~~i~~VpQ 828 (987)
.++++.+ ++|++|+|+|++||||||++++|. |++.|++|.|. .+|.++ .......+++++++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 3455544 789999999999999999999999 99999999999 999999 45678899999999996
Q ss_pred c------cccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhC
Q 001980 829 E------PALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSAL 869 (987)
Q Consensus 829 d------p~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~l 869 (987)
+ ..++..++.+|+. .+++..++..+..++.+...
T Consensus 95 ~~~~~~~~~l~~~~v~~~i~-------~~~v~~~~s~~~~~~~vr~~ 134 (252)
T 4e22_A 95 SQNGQLQVILEGEDVSNEIR-------TETVGNTASQAAAFPRVREA 134 (252)
T ss_dssp EETTEEEEEETTEECTTGGG-------SHHHHHHHHHHTTSHHHHHH
T ss_pred cCCCCceEEECCeehhHHHH-------HHHHHHHHHHhcccHHHHHH
Confidence 5 4567788888874 24566666666666665443
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-09 Score=118.92 Aligned_cols=138 Identities=13% Similarity=0.166 Sum_probs=90.9
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCH
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATE 850 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd 850 (987)
++|+.++++|++||||||++..|.+.+.+.+| +++.++.+|++ ..+..+++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~-------- 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLK-------- 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHH--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHH--------
Confidence 46899999999999999999999999988777 35677777773 333333332
Q ss_pred HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q 001980 851 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM 930 (987)
Q Consensus 851 ~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~ 930 (987)
...+..++ | -... .+ ++..+.+|+++ ++++++|+| |+++|+..+..+.+..+-..
T Consensus 155 ----~~~~~~gl-------~----~~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 155 ----TYAELLQA-------P----LEVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp ----HHHTTTTC-------C----CCBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred ----HHHHhcCC-------C----eEec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 11111211 1 1111 12 34456777764 999999999 99999877766655443322
Q ss_pred ---CCCeEEEE--ecCchhhhc-cCEEEEEeCCEEEE
Q 001980 931 ---RGRTTVLV--AHRLSTIRG-VDCIGVVQDGRIVE 961 (987)
Q Consensus 931 ---~~~TvI~I--aHRl~ti~~-~D~Iivl~~G~ive 961 (987)
.+.+++++ +|..+.+.. +|++..++.|.++-
T Consensus 210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 23456666 898777765 56655566677665
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-09 Score=118.45 Aligned_cols=112 Identities=19% Similarity=0.336 Sum_probs=77.7
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCC
Q 001980 121 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGK 200 (987)
Q Consensus 121 i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~ 200 (987)
++++.++|++++|+|+|||||||+++.|++.+.+..|+|.+.+.|... ....++
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r---------------------~~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR---------------------AAAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC---------------------HHHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc---------------------HHHHHH-----
Confidence 455668899999999999999999999999999988888876654311 011111
Q ss_pred CCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHH---HHHHHhccCCCEEEEeCCCCCCChHHHHHH
Q 001980 201 PEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI---AIARAMLKNPKILLLDEATSALDAGSESIV 277 (987)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRi---alARal~~~~~illlDEpts~LD~~~~~~i 277 (987)
+...++ .. |+.. + ..+|||+.|++ +|++|+..+|+++|+|+|.. .+....+
T Consensus 151 -------L~~~~~---------~~--gl~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l 204 (306)
T 1vma_A 151 -------LKIWGE---------RV--GATV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNL 204 (306)
T ss_dssp -------HHHHHH---------HH--TCEE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHH
T ss_pred -------HHHHHH---------Hc--CCcE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHH
Confidence 111111 11 2221 1 24689999999 99999999999999999973 3444555
Q ss_pred HHHHHhh
Q 001980 278 QEALDRL 284 (987)
Q Consensus 278 ~~~l~~~ 284 (987)
++.+.++
T Consensus 205 ~~eL~~l 211 (306)
T 1vma_A 205 MEELRKV 211 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.9e-09 Score=114.19 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=90.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
+.++++++.|+.. . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|....
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~---------- 139 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP---------- 139 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH----------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH----------
Confidence 5567788888632 1 678888 9999999999999999999999999999889988876554210
Q ss_pred EEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 001980 180 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKI 259 (987)
Q Consensus 180 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~i 259 (987)
.+. + +..... +.. |++-... +....-.+-+|.+|+++...++|+
T Consensus 140 ----------~~~-~------------ql~~~~------~~~-----~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 140 ----------AAR-E------------QLRLLG------EKV-----GVPVLEV--MDGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp ----------HHH-H------------HHHHHH------HHH-----TCCEEEC--CTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred ----------hHH-H------------HHHHhc------ccC-----CeEEEEc--CCCCCHHHHHHHHHHHHHhCCCCE
Confidence 010 0 000001 101 2221111 112234456799999998899999
Q ss_pred EEEeCC-CCCCChHHHHHHHHHHHhh
Q 001980 260 LLLDEA-TSALDAGSESIVQEALDRL 284 (987)
Q Consensus 260 lllDEp-ts~LD~~~~~~i~~~l~~~ 284 (987)
+|+|+| ++++|......+.+.....
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhc
Confidence 999999 9999988777776665543
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-11 Score=138.89 Aligned_cols=169 Identities=17% Similarity=0.194 Sum_probs=110.2
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhc------------cCCCCCceEEECCccCCCCC-HHHHhccc---EEEcccccc
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIER------------FYDPTAGKVMIDGKDIRRLN-LKSLRLKI---GLVQQEPAL 832 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~r------------l~~p~~G~I~idG~di~~i~-l~~lR~~i---~~VpQdp~l 832 (987)
.+++|+++||||++|+|||||+++|.| ..+|+.|.+.++|..+..+. ...-++.+ ..+.+-|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 67899999999985432110 00011222 356666665
Q ss_pred ccc-cHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC--CEEEEeC
Q 001980 833 FAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP--AILLLDE 909 (987)
Q Consensus 833 F~g-TIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p--~ILlLDE 909 (987)
..+ |..+++. ......++.+..--++-..-+ +..+ ..+|++. +| +|+++||
T Consensus 96 ~~~~s~~e~L~--------~~fl~~ir~~d~il~Vvd~~~--d~~i----~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGLG--------NAFLSHVRAVDAIYQVVRAFD--DAEI----IHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSSC--------HHHHHHHTTCSEEEEEEECCC--TTCS----SCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHHHH--------HHHHHHHHHHHHHHHHHhccc--ccee----eeecccc------------Ccchhhhhchh
Confidence 543 2233321 123333333322111111111 1222 2355542 88 9999999
Q ss_pred CCCCCCHHHHHHHHHHHHHH-cC-CCeEEEEecCchhhhc-cCEEE-EEeCC-EEEEecCh
Q 001980 910 ATSALDAESECVLQEALERL-MR-GRTTVLVAHRLSTIRG-VDCIG-VVQDG-RIVEQGSH 965 (987)
Q Consensus 910 aTS~LD~~te~~I~~~l~~~-~~-~~TvI~IaHRl~ti~~-~D~Ii-vl~~G-~ive~Gt~ 965 (987)
+++..|++.-...++.++.. .+ +.|++ +|.+..+.. ||+|. +|++| +++..|+.
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 99999999999999988887 44 45643 999988765 79999 99999 88766653
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-10 Score=125.41 Aligned_cols=73 Identities=21% Similarity=0.209 Sum_probs=44.5
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE---CCEeCCCCCHHHHhcceEEEcCCCCCch-----hcHHH
Q 001980 123 IFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL---DNVDIKTLQLRWLRDQIGLVNQEPALFA-----TTILE 194 (987)
Q Consensus 123 l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~---~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-----~tv~e 194 (987)
+++.+|++++|+||||||||||+++|+|+..|..|+|.+ +|.+.+... ...+..++|++|+|.+.. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 456789999999999999999999999999999999998 887765432 122223899999997653 378 9
Q ss_pred HHh
Q 001980 195 NIL 197 (987)
Q Consensus 195 ni~ 197 (987)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 984
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=9.6e-10 Score=126.33 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=48.4
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCC
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT 168 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~ 168 (987)
+|+++||++++ ++++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ 69 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAG 69 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCS
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence 79999999999 9999999999999999999999999999999999977654
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.81 E-value=4.6e-10 Score=115.68 Aligned_cols=73 Identities=11% Similarity=0.092 Sum_probs=55.6
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchh-cHHHHHhc
Q 001980 122 SIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILY 198 (987)
Q Consensus 122 ~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~ 198 (987)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++...+....+..++|++|++..|.. ++.+|+..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLE 74 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEe
Confidence 56788999999999999999999999999974 577887776655444446679999999987765 66666653
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.80 E-value=3.3e-10 Score=123.17 Aligned_cols=93 Identities=20% Similarity=0.298 Sum_probs=54.8
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEE---CCccCCCCCHHHHhcccEEEcccccccc-----ccHHHHh
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI---DGKDIRRLNLKSLRLKIGLVQQEPALFA-----ASIFDNI 841 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~i---dG~di~~i~l~~lR~~i~~VpQdp~lF~-----gTIreNL 841 (987)
+.+|++++|+|+||+|||||+++|.|+..|..|+|.+ +|.++.... ..++..+++|+|.|-++. -|+ +||
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l 247 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-EEL 247 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-HHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-HHH
Confidence 4579999999999999999999999999999999999 898876543 222223899999997653 477 888
Q ss_pred ccCCC------------C-----CCHHHHHHHHHHcCchh
Q 001980 842 AYGKE------------G-----ATEAEVVEAARAANVHG 864 (987)
Q Consensus 842 ~~~~~------------~-----~sd~ei~~al~~a~l~~ 864 (987)
....+ + .....+.++++..++.+
T Consensus 248 ~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 248 GYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp GGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH
Confidence 31111 1 12345777888887765
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.8e-12 Score=143.06 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=97.6
Q ss_pred EEeEEEECCCCCCccceeeeeEEEeCC-------cEEEEEcCCCccHHHHHHHHHcCC----CCCccEEEECCEeCCCCC
Q 001980 102 FKNVTFSYPSRPDVIIFRDFSIFFPAG-------KTVAVVGGSGSGKSTVVSLIERFY----DPNAGHVLLDNVDIKTLQ 170 (987)
Q Consensus 102 ~~~~~~~y~~~~~~~~l~~i~l~i~~G-------~~~~ivG~sGsGKSTLl~~l~g~~----~~~~G~i~~~g~~~~~~~ 170 (987)
.++++..|+. ..+++++++.+++| +.++|+||||+|||||+++|+|++ .+++|.+..++.++....
T Consensus 21 ~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~ 97 (334)
T 1in4_A 21 PKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL 97 (334)
T ss_dssp CSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH
T ss_pred CccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHH
Confidence 3355555653 24789999999877 899999999999999999999998 667777766554432211
Q ss_pred HHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHH---HHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHH
Q 001980 171 LRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEV---EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI 247 (987)
Q Consensus 171 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRi 247 (987)
....+..|.+++|.+.+.. ++.|++..........-+ ....+. +...+. +-++.. ...+...||+|+|||+
T Consensus 98 ~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~--i~~~l~--~~~li~-at~~~~~Ls~~l~sR~ 171 (334)
T 1in4_A 98 TSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKS--IRIDIQ--PFTLVG-ATTRSGLLSSPLRSRF 171 (334)
T ss_dssp HHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC-----------------C--CCEEEE-EESCGGGSCHHHHTTC
T ss_pred HHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCccccc--ccccCC--CeEEEE-ecCCcccCCHHHHHhc
Confidence 1111357999999887765 788877432110000000 000000 011111 112211 2334568999999998
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM 285 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~ 285 (987)
+++ .+||+.+.+.+.+.|++..
T Consensus 172 ~l~----------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 172 GII----------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp SEE----------------EECCCCCHHHHHHHHHHHH
T ss_pred Cce----------------eeCCCCCHHHHHHHHHHHH
Confidence 655 7788888888888887654
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.4e-09 Score=115.37 Aligned_cols=139 Identities=14% Similarity=0.190 Sum_probs=88.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCH
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATM 205 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 205 (987)
.+|++++++|+|||||||+++.|++.+.+++| ++|.++.++++ ..+..|++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHHH-------
Confidence 47999999999999999999999999988777 15777888773 2233333221
Q ss_pred HHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 001980 206 AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM 285 (987)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~ 285 (987)
.. ... |...... ..++..+.+|+++ .+++++|+| |+++|+.....+.+..+-+.
T Consensus 156 -----~~---------~~~--gl~~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 156 -----YA---------ELL--QAPLEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp -----HH---------TTT--TCCCCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred -----HH---------Hhc--CCCeEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 11 111 2211111 1235567778764 999999999 99999876655554433222
Q ss_pred ---CCCeEEEE--cCCCCcccc-CCEEEEEeCCEEEEe
Q 001980 286 ---VGRTTVVV--AHRLSTIRN-VDTVAVIQQGQVVET 317 (987)
Q Consensus 286 ---~~~tvi~v--tH~~~~~~~-~d~i~~l~~G~i~~~ 317 (987)
...+++++ ||....+.. ++++..++.+.++..
T Consensus 210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 22344555 888766654 565555566666653
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=3.7e-10 Score=130.69 Aligned_cols=158 Identities=20% Similarity=0.211 Sum_probs=96.6
Q ss_pred eeeEEEeCCcEEEEEcCCCCChHHHHHHHhc--cCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccc---c---
Q 001980 765 DFNLRIRAGQSQALVGASGSGKSSVIALIER--FYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA---S--- 836 (987)
Q Consensus 765 ~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~r--l~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~g---T--- 836 (987)
.+++++.++..+.|+|.|||||||+++.|.. ++.++.|++.+.++|.+...+..+.. =|+++.. .
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~~Vvtd~~~ 231 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLTEVVTDMKD 231 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSSSCBCSHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccceeecCHHH
Confidence 4778888999999999999999999998876 67777788888888887655544431 1333210 0
Q ss_pred HHHHhccCCCCCCHHHH---HHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH----------HHHHHHccCCC
Q 001980 837 IFDNIAYGKEGATEAEV---VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI----------AIARAVLKNPA 903 (987)
Q Consensus 837 IreNL~~~~~~~sd~ei---~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl----------aLARAllr~p~ 903 (987)
..+.|.. ..+|+ .+.++..++.++-. |+..+. ..+|+||+|+. ++|+++-..|.
T Consensus 232 a~~~L~~-----~~~EmerR~~ll~~~Gv~~i~~-----yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ 298 (512)
T 2ius_A 232 AANALRW-----CVNEMERRYKLMSALGVRNLAG-----YNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY 298 (512)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHTTCSSHHH-----HHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHcCCccHHH-----HHHHHH---HHhhcCCcccccccccccchhccccccccCCc
Confidence 1112210 01111 23333444333211 111111 13677887752 46777788898
Q ss_pred -EEEEeCCCCCCCHHHHHHHHHHHHHH---cC--CCeEEEEecCch
Q 001980 904 -ILLLDEATSALDAESECVLQEALERL---MR--GRTTVLVAHRLS 943 (987)
Q Consensus 904 -ILlLDEaTS~LD~~te~~I~~~l~~~---~~--~~TvI~IaHRl~ 943 (987)
++++||+++.+|... ..+.+.|.+. -+ |.++|++|||++
T Consensus 299 ivlvIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 299 IVVLVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 789999999998432 3344444322 22 779999999998
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.75 E-value=8.7e-12 Score=135.43 Aligned_cols=132 Identities=17% Similarity=0.248 Sum_probs=88.3
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEE
Q 001980 101 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 180 (987)
Q Consensus 101 ~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 180 (987)
+++++.+.|.. ..+++++++++++| ++|+||||||||||+++|+++.. .|.|.+++.++........++.+++
T Consensus 51 ~l~~l~~~~~~---~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHHC---HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 34555555542 34789999999999 99999999999999999999885 7899999876644333333456777
Q ss_pred EcCCCC-Cchh-cHHHHH-hcCCCCCC-----HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 181 VNQEPA-LFAT-TILENI-LYGKPEAT-----MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 181 v~Q~~~-l~~~-tv~eni-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
++|++. .++. ++.||+ .++..... .++..+. +...+ ..|||||+||+.+++|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~-----~~~ll---------------~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL---------------VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHH-----HHHHH---------------HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHH-----HHHHH---------------HHHhCCCCCCCEEEEE
Confidence 888753 3333 666776 33321100 0111111 11111 1489999999999999
Q ss_pred hccCCCE
Q 001980 253 MLKNPKI 259 (987)
Q Consensus 253 l~~~~~i 259 (987)
+..+|++
T Consensus 184 ~t~~p~~ 190 (278)
T 1iy2_A 184 ATNRPDI 190 (278)
T ss_dssp EESCTTS
T ss_pred ecCCchh
Confidence 9999976
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.4e-09 Score=110.15 Aligned_cols=81 Identities=21% Similarity=0.318 Sum_probs=68.5
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCC-------------CCCceEEECCccCCCCCHHHHhcccEEEcccccccccc
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYD-------------PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAAS 836 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gT 836 (987)
..+|+.++|+||||||||||+++|.+.++ |..|+ +||+|..-++.+.+++.+ .|+.+++.++
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~~~ 90 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEFGS 90 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEEEE
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhhhh
Confidence 34799999999999999999999999886 77887 899999999999998876 7999999999
Q ss_pred HHHHhccCCCCCCHHHHHHHHHH
Q 001980 837 IFDNIAYGKEGATEAEVVEAARA 859 (987)
Q Consensus 837 IreNL~~~~~~~sd~ei~~al~~ 859 (987)
+.+|. ||.+ .+.+.++++.
T Consensus 91 ~~~n~-YGt~---~~~v~~~l~~ 109 (197)
T 3ney_A 91 YQGNM-FGTK---FETVHQIHKQ 109 (197)
T ss_dssp ETTEE-EEEE---HHHHHHHHHT
T ss_pred hhcee-cccc---hhhHHHHHhc
Confidence 99996 7753 4555555543
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.4e-09 Score=110.21 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=57.8
Q ss_pred eEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccc-cHHHHhc
Q 001980 767 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIA 842 (987)
Q Consensus 767 sl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~g-TIreNL~ 842 (987)
|+++++|+.+||+||||||||||+++|.++++ .+.+++.++...+....+..++|++|++.+|.. +..+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57789999999999999999999999999973 689999888877766668899999999988754 4555543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.2e-11 Score=135.88 Aligned_cols=141 Identities=19% Similarity=0.193 Sum_probs=93.6
Q ss_pred cceeeeeEEEeCC-------cEEEEEcCCCCChHHHHHHHhccC----CCCCceEEECCccCCCCCHHHHhcccEEEccc
Q 001980 761 VVFKDFNLRIRAG-------QSQALVGASGSGKSSVIALIERFY----DPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQE 829 (987)
Q Consensus 761 ~vL~~vsl~I~~G-------e~vaIVG~sGsGKSTL~~lL~rl~----~p~~G~I~idG~di~~i~l~~lR~~i~~VpQd 829 (987)
.+++++++.|++| +.++|+||+|+|||||+++|.+.. .+.+|.+..++.|+..+.....+..|.+|+|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 5899999999987 889999999999999999999998 67788887777766432111124679999998
Q ss_pred cccccccHHHHhccCCCCC----------CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 830 PALFAASIFDNIAYGKEGA----------TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 830 p~lF~gTIreNL~~~~~~~----------sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
+.++. ++.+++....... ....+...+....+. +..+.. ..||+|+|||++++
T Consensus 112 ~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li--------~at~~~----~~Ls~~l~sR~~l~---- 174 (334)
T 1in4_A 112 HRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV--------GATTRS----GLLSSPLRSRFGII---- 174 (334)
T ss_dssp GGCCH-HHHHHHHHHHHTSCCCC---------------CCCEEE--------EEESCG----GGSCHHHHTTCSEE----
T ss_pred hhcCH-HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE--------EecCCc----ccCCHHHHHhcCce----
Confidence 87765 7888774211000 001111111111110 122333 46999999998665
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLM 930 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~ 930 (987)
.+||+.+...+.+.|++..
T Consensus 175 ------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 175 ------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp ------------EECCCCCHHHHHHHHHHHH
T ss_pred ------------eeCCCCCHHHHHHHHHHHH
Confidence 7788888888888777654
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=6.8e-09 Score=125.77 Aligned_cols=76 Identities=16% Similarity=0.093 Sum_probs=66.3
Q ss_pred eEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC--CCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhcc
Q 001980 767 NLRIRAGQSQALVGASGSGKSSVIALIERFYDP--TAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAY 843 (987)
Q Consensus 767 sl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p--~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~ 843 (987)
|+.+++|.+++|+|++|+|||||++.|.+...+ ..|+| .+|.++.+......++.+++.+|.+.++..+++.||..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD 80 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD 80 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence 456889999999999999999999999987765 67998 88999999999999999999999999998888888853
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.73 E-value=7.7e-09 Score=109.66 Aligned_cols=167 Identities=14% Similarity=0.126 Sum_probs=92.0
Q ss_pred cceeee-eEEEeCCcEEEEEcCCCCChHHHHH-HHhccCCCCCceEEECCccCCCCCHHHHh---cccEEEccccccccc
Q 001980 761 VVFKDF-NLRIRAGQSQALVGASGSGKSSVIA-LIERFYDPTAGKVMIDGKDIRRLNLKSLR---LKIGLVQQEPALFAA 835 (987)
Q Consensus 761 ~vL~~v-sl~I~~Ge~vaIVG~sGsGKSTL~~-lL~rl~~p~~G~I~idG~di~~i~l~~lR---~~i~~VpQdp~lF~g 835 (987)
+.|+.+ .--+++|+.++|+|++|||||||+. ++....+...+.+++++.. +.+.++ .++++.+|+....
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~~-- 83 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEEK-- 83 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHHH--
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhhC--
Confidence 356666 5679999999999999999999965 4455555545556666532 223332 3455555543110
Q ss_pred cHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCCCCC
Q 001980 836 SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL--KNPAILLLDEATSA 913 (987)
Q Consensus 836 TIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll--r~p~ILlLDEaTS~ 913 (987)
.|+..... . ...+...+. .+..+-+. +....+.+..++.++ .+|+++++|++|+-
T Consensus 84 ---~~l~~~~~-~--------------~~~~~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l 140 (247)
T 2dr3_A 84 ---GMFAMVDA-F--------------TAGIGKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTL 140 (247)
T ss_dssp ---TSEEEEEC-S--------------TTTTCC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGG
T ss_pred ---CcEEEEec-c--------------hhhcccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHh
Confidence 12211000 0 000000000 00001011 123344555555555 47999999999998
Q ss_pred C--CHHHHHHHHHHHHHHc--CCCeEEEEecCchh---------hhccCEEEEEeC
Q 001980 914 L--DAESECVLQEALERLM--RGRTTVLVAHRLST---------IRGVDCIGVVQD 956 (987)
Q Consensus 914 L--D~~te~~I~~~l~~~~--~~~TvI~IaHRl~t---------i~~~D~Iivl~~ 956 (987)
+ |+.........+.+.. .++|||+++|.... ...+|.|+.|+.
T Consensus 141 ~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 141 YINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 7 5433333333343332 48999999997764 245799999964
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.4e-10 Score=115.40 Aligned_cols=140 Identities=20% Similarity=0.197 Sum_probs=76.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCC-----------CCceEEECCccCCC--CCHHHHhcccEEEccccccccc--cHHH
Q 001980 775 SQALVGASGSGKSSVIALIERFYDP-----------TAGKVMIDGKDIRR--LNLKSLRLKIGLVQQEPALFAA--SIFD 839 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~p-----------~~G~I~idG~di~~--i~l~~lR~~i~~VpQdp~lF~g--TIre 839 (987)
+++|+|++|||||||++.|.+...+ ..|+|.++|.++.- ++....++..++++|...-..+ ++.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6999999999999999999998765 57899999976531 1111122233344432110000 1111
Q ss_pred HhccCCCCCCHHHH---HHHHHH-cCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 001980 840 NIAYGKEGATEAEV---VEAARA-ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 915 (987)
Q Consensus 840 NL~~~~~~~sd~ei---~~al~~-a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD 915 (987)
+... .+-+++ .+.++. .....-+.-.-...| |..-..+...+||++.++|+++++| ||++|
T Consensus 111 ~~~~----~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~D---------l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald 175 (191)
T 1oix_A 111 IAKH----LTYENVERWLKELRDHADSNIVIMLVGNKSD---------LRHLRAVPTDEARAFAEKNGLSFIE--TSALD 175 (191)
T ss_dssp TTCH----HHHHTHHHHHHHHHHHSCTTCEEEEEEECGG---------GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTT
T ss_pred CcCH----HHHHHHHHHHHHHHHhcCCCCcEEEEEECcc---------cccccccCHHHHHHHHHHcCCEEEE--EeCCC
Confidence 1100 000111 111111 000000000001111 1111123467899999999999999 99999
Q ss_pred HHHHHHHHHHHHHH
Q 001980 916 AESECVLQEALERL 929 (987)
Q Consensus 916 ~~te~~I~~~l~~~ 929 (987)
.+....+.+.|.+.
T Consensus 176 ~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 176 STNVEAAFQTILTE 189 (191)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999998888653
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.2e-11 Score=132.34 Aligned_cols=137 Identities=18% Similarity=0.252 Sum_probs=89.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
.+++++.+.|.. ..+++++++++++| ++|+||||||||||+++|++... .|.+.++|.++........++.++
T Consensus 26 ~~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 345566666642 34789999999999 99999999999999999999875 789999887664333333344577
Q ss_pred EEcCCCC-Cchh-cHHHHH-hcCCCCC-----CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 180 LVNQEPA-LFAT-TILENI-LYGKPEA-----TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 180 ~v~Q~~~-l~~~-tv~eni-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
+++|+.. ..+. ++.||+ .++.... ..++..+. +...+ ..|||||+||+.+++
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~-----~~~ll---------------~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL---------------VEMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHH-----HHHHH---------------HHHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH-----HHHHH---------------HHHhCCCCCCCEEEE
Confidence 7777753 3333 566666 3332110 00111111 11112 147899999999999
Q ss_pred HhccCCCEEEEeCC
Q 001980 252 AMLKNPKILLLDEA 265 (987)
Q Consensus 252 al~~~~~illlDEp 265 (987)
|+..+|++ +|++
T Consensus 159 a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 159 AATNRPDI--LDPA 170 (254)
T ss_dssp EEESCGGG--SCGG
T ss_pred EccCCchh--CCHH
Confidence 99999976 4544
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.72 E-value=5.3e-12 Score=141.94 Aligned_cols=166 Identities=15% Similarity=0.124 Sum_probs=107.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHc------------CCCCCccEEEECCEeCCCCCH-HHHhcc---eEEEcCCCCC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIER------------FYDPNAGHVLLDNVDIKTLQL-RWLRDQ---IGLVNQEPAL 187 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g------------~~~~~~G~i~~~g~~~~~~~~-~~~~~~---i~~v~Q~~~l 187 (987)
++++|..++|+|+||+|||||+++|+| ...|+.|.+.++|..+..+.. ..-++. ..++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 567999999998743211100 000111 2466777765
Q ss_pred chh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccc----cCCCCCCChHHHHHHHHHHHhccCC--CEE
Q 001980 188 FAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQV----GERGVQLSGGQKQRIAIARAMLKNP--KIL 260 (987)
Q Consensus 188 ~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~----~~~g~~LSgGqkqRialARal~~~~--~il 260 (987)
..+ |..|++ . .......+.+ +.+-..+ ......+||+. +| ++.
T Consensus 96 ~~~~s~~e~L-------~-~~fl~~ir~~----------d~il~Vvd~~~d~~i~~v~~~~------------dP~~di~ 145 (392)
T 1ni3_A 96 TKGASTGVGL-------G-NAFLSHVRAV----------DAIYQVVRAFDDAEIIHVEGDV------------DPIRDLS 145 (392)
T ss_dssp CCCCCSSSSS-------C-HHHHHHHTTC----------SEEEEEEECCCTTCSSCCSSSS------------CHHHHHH
T ss_pred ccCCcHHHHH-------H-HHHHHHHHHH----------HHHHHHHhccccceeeeecccc------------Ccchhhh
Confidence 443 322221 0 1111111111 0111111 12233456653 89 999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHhh-hC-CCeEEEEcCCCCcccc-CCEEE-EEeCC-EEEEecChH
Q 001980 261 LLDEATSALDAGSESIVQEALDRL-MV-GRTTVVVAHRLSTIRN-VDTVA-VIQQG-QVVETGTHE 321 (987)
Q Consensus 261 llDEpts~LD~~~~~~i~~~l~~~-~~-~~tvi~vtH~~~~~~~-~d~i~-~l~~G-~i~~~g~~~ 321 (987)
++|||+..+|+...+..++.+... .+ |+|++ +|.+..+.. ||++. +|++| +++..|+.+
T Consensus 146 ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 146 IIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 999999999999988888888877 54 56653 999888765 79998 89999 887666543
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.71 E-value=2.9e-11 Score=131.34 Aligned_cols=137 Identities=19% Similarity=0.257 Sum_probs=97.5
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEE
Q 001980 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 825 (987)
Q Consensus 746 ~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~ 825 (987)
+++++...|. ...+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++.+......++++..
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 3456666663 235899999999999 99999999999999999999885 7999999988766555566777888
Q ss_pred Eccccc-cc-cccHHHHhc-cCCCCC-----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 826 VQQEPA-LF-AASIFDNIA-YGKEGA-----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 826 VpQdp~-lF-~gTIreNL~-~~~~~~-----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
++|++. .+ .-++.||++ ++.... ..++..+.+. .++. .|||||+|+..+++|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~-----~ll~---------------~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-----QLLV---------------EMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHH-----HHHH---------------HHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHH-----HHHH---------------HHhCCCCCCCEEEEE
Confidence 899864 33 335677774 221111 1112222211 1111 378999999999999
Q ss_pred HccCCCEEEEeCCC
Q 001980 898 VLKNPAILLLDEAT 911 (987)
Q Consensus 898 llr~p~ILlLDEaT 911 (987)
+..+|++ ||++.
T Consensus 184 ~t~~p~~--ld~~l 195 (278)
T 1iy2_A 184 ATNRPDI--LDPAL 195 (278)
T ss_dssp EESCTTS--SCHHH
T ss_pred ecCCchh--CCHhH
Confidence 9999987 67764
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.8e-10 Score=135.03 Aligned_cols=156 Identities=14% Similarity=0.132 Sum_probs=100.7
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc-cEEEECCEeCCCCCHHHHhcceEEEcCCC---------
Q 001980 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA-GHVLLDNVDIKTLQLRWLRDQIGLVNQEP--------- 185 (987)
Q Consensus 116 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~-G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~--------- 185 (987)
.+++++++.+.+|+.++|+||+|||||||+++|+|++++.. |.+.+++.+.... ...++|+||..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHHH
Confidence 47899999999999999999999999999999999999887 8888887665443 23588887754
Q ss_pred -------------CCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 186 -------------ALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 186 -------------~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
|.+.. ++.+|+..+........+... ......+.+... +. -......+|+|++|++..++
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~----~~-~~~~~g~~~~g~~~~i~~g~ 196 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDV----RH-DPFQSGGLGTPAHERVEPGM 196 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEE----CC-CCC----CCCCGGGGEECCH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceE----Ee-chhhcCCccccccccccCce
Confidence 22211 334444332110000000000 000011112111 00 11222459999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHh
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDR 283 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~ 283 (987)
....++.+|+|||.-. |++.....+.+.|.+
T Consensus 197 ~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 197 IHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999988 798888888888764
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.69 E-value=3.7e-09 Score=112.13 Aligned_cols=166 Identities=16% Similarity=0.141 Sum_probs=84.9
Q ss_pred ceeee-eEEEeCCcEEEEEcCCCccHHHHHHHH-HcCCCCCccEEEECCEeCCCCCHHHHh---cceEEEcCCCCCchhc
Q 001980 117 IFRDF-SIFFPAGKTVAVVGGSGSGKSTVVSLI-ERFYDPNAGHVLLDNVDIKTLQLRWLR---DQIGLVNQEPALFATT 191 (987)
Q Consensus 117 ~l~~i-~l~i~~G~~~~ivG~sGsGKSTLl~~l-~g~~~~~~G~i~~~g~~~~~~~~~~~~---~~i~~v~Q~~~l~~~t 191 (987)
.|+++ .--+++|++++|+||+|||||||+..+ .+..+...+.+++++.. +...+. .++++.+|+..
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~----- 81 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYE----- 81 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHH-----
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHh-----
Confidence 45655 556899999999999999999996544 44444444445554421 122111 12333332210
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCC
Q 001980 192 ILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML--KNPKILLLDEATSAL 269 (987)
Q Consensus 192 v~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~--~~~~illlDEpts~L 269 (987)
-.+|+.+-... . . .+...+. ....+.. -+....+....++.++ .+|+++++|+|++.+
T Consensus 82 ~~~~l~~~~~~-~-~-------------~~~~~~~-~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~ 141 (247)
T 2dr3_A 82 EKGMFAMVDAF-T-A-------------GIGKSKE-YEKYIVH----DLTDIREFIEVLRQAIRDINAKRVVVDSVTTLY 141 (247)
T ss_dssp HHTSEEEEECS-T-T-------------TTCC--C-CCSCBCS----CCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGT
T ss_pred hCCcEEEEecc-h-h-------------hcccccc-ccccccc----CccCHHHHHHHHHHHHHHhCCCEEEECCchHhh
Confidence 00011110000 0 0 0000000 0000001 1122333333344443 479999999999988
Q ss_pred --ChHHHHHHHHHHHhhh--CCCeEEEEcCCCCc--------c-ccCCEEEEEeC
Q 001980 270 --DAGSESIVQEALDRLM--VGRTTVVVAHRLST--------I-RNVDTVAVIQQ 311 (987)
Q Consensus 270 --D~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~--------~-~~~d~i~~l~~ 311 (987)
|+.....+...+.++. .+.|+|+++|.... + ..+|.|+.|+.
T Consensus 142 ~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 142 INKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 5544444444454442 48899999998764 2 34799999864
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.67 E-value=5.9e-08 Score=108.04 Aligned_cols=143 Identities=17% Similarity=0.266 Sum_probs=85.2
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCce-EEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCC
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK-VMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEG 847 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~-I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~ 847 (987)
-+++|+.+.|.|++|||||||+..+..-....+|. ++++.... .+. ...+++++-+|+..++ .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~--~~~-~~a~~lG~~~~~l~i~-----------~-- 120 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA--LDP-EYAKKLGVDTDSLLVS-----------Q-- 120 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC--CCH-HHHHHTTCCGGGCEEE-----------C--
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC--cCH-HHHHHcCCCHHHeEEe-----------c--
Confidence 58899999999999999999987777544333333 44544211 111 1112222221111100 0
Q ss_pred CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC--CCEEEEeCCCCCCC----------
Q 001980 848 ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN--PAILLLDEATSALD---------- 915 (987)
Q Consensus 848 ~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~--p~ILlLDEaTS~LD---------- 915 (987)
| .+ -.|.+.++++++++ |+++|+||+|+-+.
T Consensus 121 ----------------------~-------------~~--~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd 163 (349)
T 2zr9_A 121 ----------------------P-------------DT--GEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGD 163 (349)
T ss_dssp ----------------------C-------------SS--HHHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC---
T ss_pred ----------------------C-------------CC--HHHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccccc
Confidence 0 11 13456688888865 99999999999983
Q ss_pred H---HHHHHHHHHHHHH-----cCCCeEEEEecCch----------------hh-hccCEEEEEeCCEEEEecC
Q 001980 916 A---ESECVLQEALERL-----MRGRTTVLVAHRLS----------------TI-RGVDCIGVVQDGRIVEQGS 964 (987)
Q Consensus 916 ~---~te~~I~~~l~~~-----~~~~TvI~IaHRl~----------------ti-~~~D~Iivl~~G~ive~Gt 964 (987)
. ...+.+.+.++++ ..++|||+++|-.. .+ ..||.++.+..+++...|+
T Consensus 164 ~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 164 SHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2 1222344444443 13899999999543 13 3479999998877655444
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.67 E-value=5.2e-10 Score=116.39 Aligned_cols=75 Identities=16% Similarity=0.179 Sum_probs=51.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH-------
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL------- 171 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~------- 171 (987)
.|+++|+...|+ . ++++.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~--------~--~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA--------R--TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE--------E--EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC--------C--EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 478888765542 1 566666 8999999999999999999999999999999999988743322
Q ss_pred -HHHhcceEEEcCC
Q 001980 172 -RWLRDQIGLVNQE 184 (987)
Q Consensus 172 -~~~~~~i~~v~Q~ 184 (987)
...+..++|++|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 2235679999984
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.66 E-value=2.4e-08 Score=111.20 Aligned_cols=143 Identities=19% Similarity=0.327 Sum_probs=80.7
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEA 203 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 203 (987)
-+++|+++.|.||+|||||||+..++.......|. +.|+.-+..+ +....+. +|..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~-------------------vlyi~~E~~~-~~~~a~~--lG~~-- 112 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGI-------------------AAFIDAEHAL-DPEYAKK--LGVD-- 112 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-------------------EEEEESSCCC-CHHHHHH--TTCC--
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe-------------------EEEEECCCCc-CHHHHHH--cCCC--
Confidence 47899999999999999999988887655443333 3343333211 0000000 0000
Q ss_pred CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC--CCEEEEeCCCCCC----------Ch
Q 001980 204 TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN--PKILLLDEATSAL----------DA 271 (987)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~--~~illlDEpts~L----------D~ 271 (987)
.+.+ .+-. ..++ .|-+.+++++.++ |+++++|++++.+ |+
T Consensus 113 -----------------~~~l------~i~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 113 -----------------TDSL------LVSQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp -----------------GGGC------EEEC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred -----------------HHHe------EEec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 0000 0000 1122 2345678888755 9999999999998 33
Q ss_pred ---HHHHHHHHHHHhh----h-CCCeEEEEcCCCCc----------------ccc-CCEEEEEeCCEEEEec
Q 001980 272 ---GSESIVQEALDRL----M-VGRTTVVVAHRLST----------------IRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 272 ---~~~~~i~~~l~~~----~-~~~tvi~vtH~~~~----------------~~~-~d~i~~l~~G~i~~~g 318 (987)
...+.+.+.+.++ . .+.|+|+++|-... +++ ||.++.++.+++...|
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 1222344444443 2 38999999996531 333 7888888777665444
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.1e-09 Score=108.27 Aligned_cols=141 Identities=18% Similarity=0.137 Sum_probs=75.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC-----------CccEEEECCEeCCC--CCHHHHhcceEEEcCCCCCchh--cHHH
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYDP-----------NAGHVLLDNVDIKT--LQLRWLRDQIGLVNQEPALFAT--TILE 194 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~~-----------~~G~i~~~g~~~~~--~~~~~~~~~i~~v~Q~~~l~~~--tv~e 194 (987)
+++|+|+||||||||++.++|...+ +.|+|.++|.++.- ++....++..++++|...-... ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 57899999976521 1111111112222221000000 0100
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhHHHHHHh-CCCCCc-ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChH
Q 001980 195 NILYGKPEATMAEVEAAASAANAHSFITL-LPNGYS-TQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272 (987)
Q Consensus 195 ni~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~-t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~ 272 (987)
+ ............ ...+.. .+.... -.++.+ ..|..-..++..+||+++.+|+++++| ||++|..
T Consensus 111 ~-------~~~~s~~~~~~~---~~~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~ 177 (191)
T 1oix_A 111 I-------AKHLTYENVERW---LKELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDST 177 (191)
T ss_dssp T-------TCHHHHHTHHHH---HHHHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCT
T ss_pred C-------cCHHHHHHHHHH---HHHHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCC
Confidence 0 011111110000 001111 111110 112221 122222234578899999999999999 9999999
Q ss_pred HHHHHHHHHHh
Q 001980 273 SESIVQEALDR 283 (987)
Q Consensus 273 ~~~~i~~~l~~ 283 (987)
..+.+++.|.+
T Consensus 178 ~v~~l~~~l~~ 188 (191)
T 1oix_A 178 NVEAAFQTILT 188 (191)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99988888764
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=4.3e-11 Score=128.10 Aligned_cols=139 Identities=19% Similarity=0.242 Sum_probs=97.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
.+++++...|. ...+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++.+......++++.
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 34566666663 235899999999999 99999999999999999999875 799999998876555555667788
Q ss_pred EEccccc-cc-cccHHHHhc-cCCCCC-----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 825 LVQQEPA-LF-AASIFDNIA-YGKEGA-----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 825 ~VpQdp~-lF-~gTIreNL~-~~~~~~-----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
.++|+.. .+ .-++.||++ ++.... ..++..+.+. .++. .|||||+|+..+++
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~-----~ll~---------------~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-----QLLV---------------EMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHH-----HHHH---------------HHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHH-----HHHH---------------HHhCCCCCCCEEEE
Confidence 8888764 22 335667773 221110 1112221111 1111 37899999999999
Q ss_pred HHccCCCEEEEeCCCC
Q 001980 897 AVLKNPAILLLDEATS 912 (987)
Q Consensus 897 Allr~p~ILlLDEaTS 912 (987)
|+..+|++ ||++.-
T Consensus 159 a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 159 AATNRPDI--LDPALL 172 (254)
T ss_dssp EEESCGGG--SCGGGG
T ss_pred EccCCchh--CCHHHc
Confidence 99999987 788765
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.2e-10 Score=120.23 Aligned_cols=128 Identities=17% Similarity=0.196 Sum_probs=86.7
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC---CCCccEEEE--------CCEeCCC-CCHHHHhcceEEEcCCCC------Cc
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFY---DPNAGHVLL--------DNVDIKT-LQLRWLRDQIGLVNQEPA------LF 188 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~---~~~~G~i~~--------~g~~~~~-~~~~~~~~~i~~v~Q~~~------l~ 188 (987)
.+.+++|+|++||||||++++|.+.+ .++.|.+.. +|.++.+ ....++++++++++|++. +.
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35689999999999999999999876 678899877 6776653 344567888999999763 33
Q ss_pred hhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccc-cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 001980 189 ATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQV-GERGVQLSGGQKQRIAIARAMLKNPKILLLDEAT 266 (987)
Q Consensus 189 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~-~~~g~~LSgGqkqRialARal~~~~~illlDEpt 266 (987)
..++.+++. .+++..++..+..++.+.....+..+.+ ..+|.-++|+ .++++++.+++++++.++.
T Consensus 84 ~~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 84 GEDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp TEECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred CeeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 447777763 2455555555544444443322322222 2345567776 4566778889999987764
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=7.3e-10 Score=128.21 Aligned_cols=158 Identities=22% Similarity=0.239 Sum_probs=92.8
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHc--CCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCch---hcH--
Q 001980 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIER--FYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA---TTI-- 192 (987)
Q Consensus 120 ~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g--~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~---~tv-- 192 (987)
.+++.+.++..+.|.|++||||||+++.|.. ++.++.|++.+.+.|.+......+. .-|++.. ...
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~-------~lPhl~~~Vvtd~~~ 231 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE-------GIPHLLTEVVTDMKD 231 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT-------TCTTBSSSCBCSHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc-------cCCcccceeecCHHH
Confidence 4788889999999999999999999999876 6667778888777776543322221 1122211 011
Q ss_pred -HHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccC---CCCCCChHHHHHH----------HHHHHhccCCC
Q 001980 193 -LENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGE---RGVQLSGGQKQRI----------AIARAMLKNPK 258 (987)
Q Consensus 193 -~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~---~g~~LSgGqkqRi----------alARal~~~~~ 258 (987)
.+.+... .+++. ++ .+.+... |....-+- ....+||||+||. ++|+++...|.
T Consensus 232 a~~~L~~~-----~~Eme---rR---~~ll~~~--Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ 298 (512)
T 2ius_A 232 AANALRWC-----VNEME---RR---YKLMSAL--GVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY 298 (512)
T ss_dssp HHHHHHHH-----HHHHH---HH---HHHHHHT--TCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred HHHHHHHH-----HHHHH---HH---HHHHHHc--CCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCc
Confidence 1111000 00111 11 1222222 33221110 0124788888753 46777888898
Q ss_pred -EEEEeCCCCCCChHHHHHHHHHHHhh----h-CCCeEEEEcCCCC
Q 001980 259 -ILLLDEATSALDAGSESIVQEALDRL----M-VGRTTVVVAHRLS 298 (987)
Q Consensus 259 -illlDEpts~LD~~~~~~i~~~l~~~----~-~~~tvi~vtH~~~ 298 (987)
++++||+++.+|... ..+.+.+.++ + .|.++|++|||+.
T Consensus 299 ivlvIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 299 IVVLVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 899999999888432 3344444433 2 2789999999998
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.61 E-value=9.8e-10 Score=114.30 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=52.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH-------
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL------- 816 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l------- 816 (987)
.|+++|+...|. . ++++++ +.++|+||||||||||+++|.+++.|++|.|.++|.++...+.
T Consensus 9 ~l~l~~~~~~~~--------~--~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA--------R--TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE--------E--EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC--------C--EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 478888865441 1 566677 8999999999999999999999999999999999999844332
Q ss_pred -HHHhcccEEEccc
Q 001980 817 -KSLRLKIGLVQQE 829 (987)
Q Consensus 817 -~~lR~~i~~VpQd 829 (987)
..+|..+++|+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 2346789999985
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.4e-09 Score=116.01 Aligned_cols=72 Identities=21% Similarity=0.255 Sum_probs=61.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHH---cCCCCCccEEE--------ECCEeCC-CCCHHHHhcceEEEcCCC------CC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIE---RFYDPNAGHVL--------LDNVDIK-TLQLRWLRDQIGLVNQEP------AL 187 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~---g~~~~~~G~i~--------~~g~~~~-~~~~~~~~~~i~~v~Q~~------~l 187 (987)
++|++++|+|||||||||++++|+ |+..|++|.+. .+|.++. ......+++++++++|++ ++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999999 8999884 446678888999999754 34
Q ss_pred chhcHHHHHh
Q 001980 188 FATTILENIL 197 (987)
Q Consensus 188 ~~~tv~eni~ 197 (987)
+..++.+||.
T Consensus 105 ~~~~v~~~i~ 114 (252)
T 4e22_A 105 EGEDVSNEIR 114 (252)
T ss_dssp TTEECTTGGG
T ss_pred CCeehhHHHH
Confidence 4557777765
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.8e-09 Score=129.91 Aligned_cols=157 Identities=13% Similarity=0.171 Sum_probs=103.4
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC-ceEEECCccCCCCCHHHHhcccEEEccccc--------
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA-GKVMIDGKDIRRLNLKSLRLKIGLVQQEPA-------- 831 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~-G~I~idG~di~~i~l~~lR~~i~~VpQdp~-------- 831 (987)
.+++++++.+++|+.+.|+||+|+|||||+++|.++..+.. |.+.+++.+.... ...++++||...
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHHH
Confidence 58999999999999999999999999999999999999887 8899988776643 356888887541
Q ss_pred --------------cc-cccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 832 --------------LF-AASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 832 --------------lF-~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
.| ..++.+|+...........+... ......+++ +.++..- .....+|+|++|++..++
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~----G~~~~~~-~~~g~~~~g~~~~i~~g~ 196 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALL----GDVRHDP-FQSGGLGTPAHERVEPGM 196 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHH----CEECCCC-C----CCCCGGGGEECCH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcC----ceEEech-hhcCCccccccccccCce
Confidence 11 12333344321110000000000 000001111 1111111 111349999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERL 929 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~ 929 (987)
....++.+|+|||... |++.....+.+.|++.
T Consensus 197 ~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~~ 228 (604)
T 3k1j_A 197 IHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQEK 228 (604)
T ss_dssp HHHTTTSEEEETTGGG-SCHHHHHHHHHHHHHS
T ss_pred eeecCCCEEEEechhh-CCHHHHHHHHHHHHcC
Confidence 9999999999999998 8999999999988753
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-07 Score=110.50 Aligned_cols=177 Identities=11% Similarity=0.117 Sum_probs=108.5
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCc-eEEECCccCCCCCHHHHhccc-EEEccccccccccHH
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG-KVMIDGKDIRRLNLKSLRLKI-GLVQQEPALFAASIF 838 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G-~I~idG~di~~i~l~~lR~~i-~~VpQdp~lF~gTIr 838 (987)
+.|++++.-+++|+.+.|.||+|+|||||+..+.+...+..| .+.+-+.. .+...++.++ +....-+ .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~-------~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNIN-------A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCC-------H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCC-------H
Confidence 478888888999999999999999999999999887766445 56555433 3445555443 1110000 0
Q ss_pred HHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCH
Q 001980 839 DNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL--KNPAILLLDEATSALDA 916 (987)
Q Consensus 839 eNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll--r~p~ILlLDEaTS~LD~ 916 (987)
+++..+ ..++++.....+.. +.+...|- .+.+ ...+|.+|.+ +.||++. .+|+++|+|+++.-.+.
T Consensus 261 ~~l~~g--~l~~~~~~~~~~a~---~~l~~~~l----~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 261 QNLRTG--KLTPEDWGKLTMAM---GSLSNAGI----YIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHTS--CCCHHHHHHHHHHH---HHHHSSCE----EEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHhcC--CCCHHHHHHHHHHH---HHHhcCCE----EEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 112112 23454433222211 11221111 1111 1368999876 6677776 57999999999997743
Q ss_pred H--------HHHHHHHHHHHHc--CCCeEEEEec-----------Cch--------hh-hccCEEEEEeCCEE
Q 001980 917 E--------SECVLQEALERLM--RGRTTVLVAH-----------RLS--------TI-RGVDCIGVVQDGRI 959 (987)
Q Consensus 917 ~--------te~~I~~~l~~~~--~~~TvI~IaH-----------Rl~--------ti-~~~D~Iivl~~G~i 959 (987)
. .-..+.+.|+.+. .++|||+++| |+. .+ .+||.|++|..++.
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 1 1244555565543 3899999999 132 33 35899999987654
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=8.9e-09 Score=103.79 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=63.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCCC-CCceEE----------ECCccCCCCCHHHHhcccEEEccccccccccHHHH
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYDP-TAGKVM----------IDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDN 840 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-~~G~I~----------idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreN 840 (987)
+|+.++|+||||||||||+++|.+++++ ..|.|. +||++...++.+.+++. ++|+.+++.+++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc
Confidence 6899999999999999999999999863 344443 57888888888888774 578999999999999
Q ss_pred hccCCCCCCHHHHHHHHH
Q 001980 841 IAYGKEGATEAEVVEAAR 858 (987)
Q Consensus 841 L~~~~~~~sd~ei~~al~ 858 (987)
. ++. +.+.+.++++
T Consensus 81 ~-yg~---~~~~i~~~l~ 94 (180)
T 1kgd_A 81 M-YGT---KLETIRKIHE 94 (180)
T ss_dssp E-EEE---EHHHHHHHHH
T ss_pred c-ccc---cHHHHHHHHH
Confidence 4 554 3455665554
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=9.2e-09 Score=106.15 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=44.3
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCC
Q 001980 768 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK 845 (987)
Q Consensus 768 l~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~ 845 (987)
-++++|++++|+|++||||||+++.|.+.++ .+.+++||+++|++ +|+..+.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~ 67 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDK 67 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhccc
Confidence 3578899999999999999999999999875 48899999999976 6665443
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.54 E-value=2.1e-08 Score=116.42 Aligned_cols=177 Identities=13% Similarity=0.142 Sum_probs=105.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEECCEeCCCCCHHHHhcce-EEEcCCCCCchhcHH
Q 001980 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG-HVLLDNVDIKTLQLRWLRDQI-GLVNQEPALFATTIL 193 (987)
Q Consensus 116 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~i-~~v~Q~~~l~~~tv~ 193 (987)
+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+ .+...+..++ +....- . .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~------~-~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNI------N-A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTC------C-H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCC------C-H
Confidence 468888877999999999999999999999999987766445 45443322 2223222221 100000 0 0
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCCCh
Q 001980 194 ENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML--KNPKILLLDEATSALDA 271 (987)
Q Consensus 194 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~--~~~~illlDEpts~LD~ 271 (987)
+.+..|. ...++....... .+.+...| -.+.. ...+|++|.+ +.+|.+. .+|+++++|+++...++
T Consensus 261 ~~l~~g~--l~~~~~~~~~~a---~~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 261 QNLRTGK--LTPEDWGKLTMA---MGSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHTSC--CCHHHHHHHHHH---HHHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHhcCC--CCHHHHHHHHHH---HHHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 1222221 223332222221 12233222 12222 3478999986 5667766 58999999999998753
Q ss_pred H--------HHHHHHHHHHhhh--CCCeEEEEcC---------C--CC--------cccc-CCEEEEEeCCEE
Q 001980 272 G--------SESIVQEALDRLM--VGRTTVVVAH---------R--LS--------TIRN-VDTVAVIQQGQV 314 (987)
Q Consensus 272 ~--------~~~~i~~~l~~~~--~~~tvi~vtH---------~--~~--------~~~~-~d~i~~l~~G~i 314 (987)
. ....+.+.|+.+. .+.+||+++| + +. .+.. ||.|++|..++.
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 2 2245556666654 2899999999 2 32 3444 899999986643
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-09 Score=122.19 Aligned_cols=136 Identities=13% Similarity=0.155 Sum_probs=86.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHH
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDN 840 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreN 840 (987)
++|+++|+.+++|+.++|+||+|||||||+++|.+.+ +|.+..-. .. .+.++..++++||...+| .++
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~~---~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--LP---LDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--SC---TTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--cc---chhHHHHHHHhcchhHHH----HHH
Confidence 5899999999999999999999999999999999864 67776511 11 122334578889987643 333
Q ss_pred hccCCC---C---CC----HHHHHHHHHH---cCch----hhHhh-C-CCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 001980 841 IAYGKE---G---AT----EAEVVEAARA---ANVH----GFVSA-L-PNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 901 (987)
Q Consensus 841 L~~~~~---~---~s----d~ei~~al~~---a~l~----~~i~~-l-p~gldt~vge~G~~LSgGQrQrlaLARAllr~ 901 (987)
++.... + .. +..+.+.+.- +.+. +.+.. + |..+ ..+-..+++|.+||++.+.+++.+
T Consensus 225 ~~~~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~l----d~~~~~l~~~~~~rl~~~~~l~~~ 300 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIV----TMNEYSVPKTLQARFVKQIDFRPK 300 (377)
T ss_dssp CCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEE----EECSCCCCHHHHTTEEEEEECCCC
T ss_pred HHHHHHHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCccc----ChhHHhhcHHHHHHHhhhhccCCC
Confidence 332211 0 01 0112222210 0000 00000 0 2222 334456899999999999888999
Q ss_pred CCEEE-EeCCCC
Q 001980 902 PAILL-LDEATS 912 (987)
Q Consensus 902 p~ILl-LDEaTS 912 (987)
|++++ ||+|+.
T Consensus 301 pDLliyLd~~~~ 312 (377)
T 1svm_A 301 DYLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHHTCTH
T ss_pred CCeEEEEeCCHH
Confidence 99988 999987
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.2e-08 Score=103.41 Aligned_cols=74 Identities=19% Similarity=0.342 Sum_probs=60.2
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCC-------------CCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCc
Q 001980 122 SIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-------------PNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALF 188 (987)
Q Consensus 122 ~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-------------~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~ 188 (987)
|+...+|++++|+||||||||||++.|++.++ |..|+ ++|.+....+.+.+++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 44456899999999999999999999999886 67787 689888888888877765 6888888
Q ss_pred hhcHHHHHhcCCC
Q 001980 189 ATTILENILYGKP 201 (987)
Q Consensus 189 ~~tv~eni~~~~~ 201 (987)
.+++.+| .+|.+
T Consensus 88 ~~~~~~n-~YGt~ 99 (197)
T 3ney_A 88 FGSYQGN-MFGTK 99 (197)
T ss_dssp EEEETTE-EEEEE
T ss_pred hhhhhce-ecccc
Confidence 8999999 47754
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=3.5e-08 Score=100.98 Aligned_cols=138 Identities=18% Similarity=0.184 Sum_probs=73.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccC-----CCC------CceEEECCccCC-----CCCHHHHhcccEEEccccc--c--cc
Q 001980 775 SQALVGASGSGKSSVIALIERFY-----DPT------AGKVMIDGKDIR-----RLNLKSLRLKIGLVQQEPA--L--FA 834 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~-----~p~------~G~I~idG~di~-----~i~l~~lR~~i~~VpQdp~--l--F~ 834 (987)
+++|+|++|||||||++.|.+.. .|+ .|.|.++|.++. .-+.+..|+......|+.. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 69999999999999999999974 233 578999997652 2223333333333333321 1 22
Q ss_pred ccHHHHhccCCCCCCHHHHHHHHHHcC-chhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCC
Q 001980 835 ASIFDNIAYGKEGATEAEVVEAARAAN-VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 913 (987)
Q Consensus 835 gTIreNL~~~~~~~sd~ei~~al~~a~-l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~ 913 (987)
.+-..... .-......++... ...-+.-.-...|-. + -... ....||++.++|+++++| ||+
T Consensus 87 ~~~~~s~~------~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~--~-~~~~------~~~~a~~l~~~~~~~~~d--~Sa 149 (199)
T 2f9l_A 87 IAKHLTYE------NVERWLKELRDHADSNIVIMLVGNKSDLR--H-LRAV------PTDEARAFAEKNNLSFIE--TSA 149 (199)
T ss_dssp TTCHHHHH------THHHHHHHHHHHSCTTCEEEEEEECTTCG--G-GCCS------CHHHHHHHHHHTTCEEEE--CCT
T ss_pred CcCHHHHH------HHHHHHHHHHHhcCCCCeEEEEEECcccc--c-ccCc------CHHHHHHHHHHcCCeEEE--EeC
Confidence 22111100 0001111111110 000000000111110 0 0111 235689999999999999 999
Q ss_pred CCHHHHHHHHHHHHHH
Q 001980 914 LDAESECVLQEALERL 929 (987)
Q Consensus 914 LD~~te~~I~~~l~~~ 929 (987)
+|...-..+.+.|.+.
T Consensus 150 l~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 150 LDSTNVEEAFKNILTE 165 (199)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999888888777654
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-07 Score=96.92 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=31.1
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhh
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL 284 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~ 284 (987)
...||+++.+|++.++| ||++|....+.+++.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45699999999999999 9999999888888877653
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.37 E-value=5.2e-08 Score=100.61 Aligned_cols=80 Identities=24% Similarity=0.195 Sum_probs=59.2
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccCCC-CCceEE----------ECCccCCCCCHHHHhcccEEEccccccccccHHH
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFYDP-TAGKVM----------IDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 839 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-~~G~I~----------idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIre 839 (987)
++|+.++|+||||||||||++.|.+.+++ ..+.+. .+|++...++.+.+++.+ .|+.+++.+++..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 57999999999999999999999999976 333332 467777777777777765 6778888888888
Q ss_pred HhccCCCCCCHHHHHHHH
Q 001980 840 NIAYGKEGATEAEVVEAA 857 (987)
Q Consensus 840 NL~~~~~~~sd~ei~~al 857 (987)
|. |+. +.+.+.+.+
T Consensus 83 ~~-yg~---~~~~i~~~l 96 (208)
T 3tau_A 83 NY-YGT---PLEYVEEKL 96 (208)
T ss_dssp EE-EEE---EHHHHHHHH
T ss_pred cc-CCC---cHHHHHHHH
Confidence 84 553 344444444
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=7.2e-08 Score=116.81 Aligned_cols=135 Identities=18% Similarity=0.133 Sum_probs=94.8
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCC--CccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcC
Q 001980 122 SIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP--NAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG 199 (987)
Q Consensus 122 ~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~ 199 (987)
++++++|..++|+|++|+|||||++.|++...+ ..|+| .+|..+.++...+.++.+++.+|.+.++..+++.||.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 456788999999999999999999999987665 67888 788888888888888899999998877766655555421
Q ss_pred CCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHH
Q 001980 200 KPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 279 (987)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~ 279 (987)
.-..+. + . ......-..+..++++| |+.++++.++..+..
T Consensus 82 pG~~~f----------------------------------~-~----~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~ 121 (665)
T 2dy1_A 82 PGYGDF----------------------------------V-G----EIRGALEAADAALVAVS-AEAGVQVGTERAWTV 121 (665)
T ss_dssp CCSGGG----------------------------------H-H----HHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHH
T ss_pred CCccch----------------------------------H-H----HHHHHHhhcCcEEEEEc-CCcccchhHHHHHHH
Confidence 100000 0 0 00111113466788889 999999988755544
Q ss_pred HHHhhhCCCeEEEEcCCCCcc
Q 001980 280 ALDRLMVGRTTVVVAHRLSTI 300 (987)
Q Consensus 280 ~l~~~~~~~tvi~vtH~~~~~ 300 (987)
+. . .+.++|++.|+++..
T Consensus 122 ~~-~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 122 AE-R--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HH-H--TTCCEEEEEECGGGC
T ss_pred HH-H--ccCCEEEEecCCchh
Confidence 32 2 378899999987754
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.9e-09 Score=120.70 Aligned_cols=132 Identities=14% Similarity=0.155 Sum_probs=85.4
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHH
Q 001980 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILEN 195 (987)
Q Consensus 116 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 195 (987)
.+++++++.+++|++++|+||+|||||||+++|+|. .+|.+..-. ... ..++..+++++|.+.++ .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~~---~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LPL---DRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SCT---TTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--ccc---hhHHHHHHHhcchhHHH----HHH
Confidence 478999999999999999999999999999999995 467776511 111 11223478888887542 222
Q ss_pred HhcCCC------CCCHHHHHHHHHHHhHHHHHHh-----------------CCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 196 ILYGKP------EATMAEVEAAASAANAHSFITL-----------------LPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 196 i~~~~~------~~~~~~~~~~~~~~~~~~~~~~-----------------~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
+.+... .... .. ....+.+.+.. ++.| .+..+...+++|.+||++.+.+
T Consensus 225 ~~~~~~~~r~l~~~~~--~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg---~ld~~~~~l~~~~~~rl~~~~~ 296 (377)
T 1svm_A 225 VKGTGGESRDLPSGQG--IN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPG---IVTMNEYSVPKTLQARFVKQID 296 (377)
T ss_dssp CCCSTTTTTTCCCCSH--HH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCE---EEEECSCCCCHHHHTTEEEEEE
T ss_pred HHHHHHHHhhccccCc--ch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCc---ccChhHHhhcHHHHHHHhhhhc
Confidence 222211 0011 10 01112222220 1111 2344556799999999999988
Q ss_pred hccCCCEEE-EeCCCC
Q 001980 253 MLKNPKILL-LDEATS 267 (987)
Q Consensus 253 l~~~~~ill-lDEpts 267 (987)
++.+|++++ ||+|+.
T Consensus 297 l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 297 FRPKDYLKHCLERSEF 312 (377)
T ss_dssp CCCCHHHHHHHHTCTH
T ss_pred cCCCCCeEEEEeCCHH
Confidence 999999988 999987
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.34 E-value=4.9e-07 Score=104.33 Aligned_cols=113 Identities=21% Similarity=0.345 Sum_probs=74.3
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHH
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENI 196 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni 196 (987)
.++++++.+++| +.|+||+|+|||||++++++.... .+-++. + .+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------------------~f~~is-------~--~~-- 84 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------------------PFFHIS-------G--SD-- 84 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------------------CEEEEE-------G--GG--
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------------------CeeeCC-------H--HH--
Confidence 566777777777 889999999999999999985421 011110 0 00
Q ss_pred hcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC----------
Q 001980 197 LYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEAT---------- 266 (987)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpt---------- 266 (987)
+...+ +| .|++++|-.+++|....|.|+++||+-
T Consensus 85 -----------------------~~~~~-------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 85 -----------------------FVELF-------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp -----------------------TTTCC-------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred -----------------------HHHHH-------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 00000 11 278899999999999999999999993
Q ss_pred CCCChHHHHHHHHHHHhhh-----CCCeEEEEcCCCCcc
Q 001980 267 SALDAGSESIVQEALDRLM-----VGRTTVVVAHRLSTI 300 (987)
Q Consensus 267 s~LD~~~~~~i~~~l~~~~-----~~~tvi~vtH~~~~~ 300 (987)
++.|....+.+.+.+..+. .+..+|.+||+++.+
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 4566665555555554432 356888999998654
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.32 E-value=9.6e-08 Score=96.18 Aligned_cols=99 Identities=21% Similarity=0.268 Sum_probs=63.4
Q ss_pred eeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCc--cCCCCCHH----HHhcccEEEccccc------
Q 001980 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK--DIRRLNLK----SLRLKIGLVQQEPA------ 831 (987)
Q Consensus 764 ~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~--di~~i~l~----~lR~~i~~VpQdp~------ 831 (987)
+++++.+.+| .++|+|+||||||||+.+|..+..+..|...-.+. ++-.-+.. ..+..|.++.|+|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 7899999999 99999999999999999999988877765433331 11111110 23567999999863
Q ss_pred ----cccccHHHH----hccCCCCCCHHHHHHHHHHcCch
Q 001980 832 ----LFAASIFDN----IAYGKEGATEAEVVEAARAANVH 863 (987)
Q Consensus 832 ----lF~gTIreN----L~~~~~~~sd~ei~~al~~a~l~ 863 (987)
.+..++..+ +.......+.+++.+.++.+++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMIS 136 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCC
Confidence 111122111 11111224677888888777664
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.30 E-value=9.3e-07 Score=101.98 Aligned_cols=113 Identities=27% Similarity=0.379 Sum_probs=75.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHh
Q 001980 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI 841 (987)
Q Consensus 762 vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL 841 (987)
.++++++.+++| +.|+||+|+|||||++++.+-... |+ +.-+..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~------------------------------~f-~~is~~--- 83 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV------------------------------PF-FHISGS--- 83 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC------------------------------CE-EEEEGG---
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC------------------------------Ce-eeCCHH---
Confidence 577788888888 999999999999999999984310 00 100100
Q ss_pred ccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCC----------
Q 001980 842 AYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT---------- 911 (987)
Q Consensus 842 ~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaT---------- 911 (987)
+++... +| .+++++|-.+++|....|.||++||+.
T Consensus 84 ----------------------~~~~~~-------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 84 ----------------------DFVELF-------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp ----------------------GTTTCC-------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred ----------------------HHHHHH-------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 111000 11 267889999999999999999999994
Q ss_pred CCCCHHHHHHHHHHHHHHc-----CCCeEEEEecCchhh
Q 001980 912 SALDAESECVLQEALERLM-----RGRTTVLVAHRLSTI 945 (987)
Q Consensus 912 S~LD~~te~~I~~~l~~~~-----~~~TvI~IaHRl~ti 945 (987)
++.|.+.++.+.+.+.+.- .+..||..||+++.+
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 4667776666666665431 356788899998654
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.30 E-value=3.3e-07 Score=102.63 Aligned_cols=144 Identities=15% Similarity=0.265 Sum_probs=84.8
Q ss_pred CcE-EEEEcCCCccHHHHHHHHHcCCC-----------CCccEEEECCEeCCCCCHHHHhcceEEEcCCCCC----chhc
Q 001980 128 GKT-VAVVGGSGSGKSTVVSLIERFYD-----------PNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPAL----FATT 191 (987)
Q Consensus 128 G~~-~~ivG~sGsGKSTLl~~l~g~~~-----------~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l----~~~t 191 (987)
|-. ++|+|++|||||||++.|+|... |+.|.+.++|.++. +....|++.|.|.- |..|
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~t 251 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVT 251 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHH
Confidence 444 99999999999999999999875 67799999987653 22356777765532 2222
Q ss_pred HHHHHhcCC-------CCCCHHHHHHHHHHHhHHHHHHhCC-CCCc-ccccCCCCCCChHHHHHHHHH----HHh-ccCC
Q 001980 192 ILENILYGK-------PEATMAEVEAAASAANAHSFITLLP-NGYS-TQVGERGVQLSGGQKQRIAIA----RAM-LKNP 257 (987)
Q Consensus 192 v~eni~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-t~~~~~g~~LSgGqkqRialA----Ral-~~~~ 257 (987)
.+.+.... ............. ...+.+..+. .+.. -.+..+...+|+|++||+.++ +++ ..+|
T Consensus 252 -l~~~~~aD~il~VvD~s~~~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 252 -LSEAKYSDALILVIDSTFSENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp -HHGGGGSSEEEEEEETTSCHHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred -HHHHHhCCEEEEEEECCCCcchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 22332110 0111111111111 1112222221 1111 233555666898999988877 666 4445
Q ss_pred CEEEEeCCCCCCChHHHHHHHHHHHhh
Q 001980 258 KILLLDEATSALDAGSESIVQEALDRL 284 (987)
Q Consensus 258 ~illlDEpts~LD~~~~~~i~~~l~~~ 284 (987)
++ +|+|++|......+.+.|.+.
T Consensus 329 ~~----~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 329 DV----IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp EE----EECBTTTTBSHHHHHHHHHHH
T ss_pred cE----EEEECCCCcCHHHHHHHHHHH
Confidence 54 899999999988888888665
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=6e-07 Score=100.89 Aligned_cols=45 Identities=33% Similarity=0.423 Sum_probs=34.7
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc--CCCCCccEEEECC
Q 001980 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIER--FYDPNAGHVLLDN 163 (987)
Q Consensus 116 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g--~~~~~~G~i~~~g 163 (987)
.+|++++++++ .++|||++|||||||++.|+| ++++.+|.++..+
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 37889999988 999999999999999999999 6677777765443
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.27 E-value=9.2e-08 Score=98.05 Aligned_cols=59 Identities=20% Similarity=0.191 Sum_probs=41.7
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCC
Q 001980 122 SIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEP 185 (987)
Q Consensus 122 ~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~ 185 (987)
.++.++|++++|+|+||||||||+++|+|.+ |.+.++|.++.... ...+..+++++|++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~-~~~~~~~g~~~~~~ 81 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPE-NIATMQRGIPLTDE 81 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHH-HHHHHHTTCCCCHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHH-HHHHHhcCCCCCCc
Confidence 3566899999999999999999999999987 89999987664211 11122467777764
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.25 E-value=7.8e-08 Score=101.68 Aligned_cols=52 Identities=25% Similarity=0.388 Sum_probs=35.8
Q ss_pred cEEEEeE-EEECCCCCCccceeeeeEEEeC---CcEEEEEcCCCCChHHHHHHHhccC
Q 001980 744 EIELRHV-DFAYPSRPDVVVFKDFNLRIRA---GQSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 744 ~I~f~~v-sf~Y~~~~~~~vL~~vsl~I~~---Ge~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
.++++|+ +|+|.+ +.++|+|+||+|++ |++++|+|++||||||+.++|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 34699999999999 9999999999999999999999854
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.9e-07 Score=95.99 Aligned_cols=84 Identities=19% Similarity=0.136 Sum_probs=51.0
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEcccccc-----------cccc
Q 001980 768 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPAL-----------FAAS 836 (987)
Q Consensus 768 l~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~l-----------F~gT 836 (987)
++|++|+.++|+|+|||||||++++|.+++.|..| +.+ +....... ...+.++++++|++.. +..+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAFEALIKDDQFIEYAE 77 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHHHHHHHcCCeEEEEe
Confidence 46889999999999999999999999999977555 222 11222211 1123347778877643 3444
Q ss_pred HHHHhccCCCCCCHHHHHHHHH
Q 001980 837 IFDNIAYGKEGATEAEVVEAAR 858 (987)
Q Consensus 837 IreNL~~~~~~~sd~ei~~al~ 858 (987)
++.|+ ++. ..+++.++++
T Consensus 78 ~~~~~-~g~---~~~~i~~~l~ 95 (207)
T 2j41_A 78 YVGNY-YGT---PVQYVKDTMD 95 (207)
T ss_dssp ETTEE-EEE---EHHHHHHHHH
T ss_pred ECCee-cCC---CHHHHHHHHH
Confidence 55553 332 3456665554
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.5e-07 Score=94.82 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=45.9
Q ss_pred eEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccc
Q 001980 767 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALF 833 (987)
Q Consensus 767 sl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF 833 (987)
.++.++|+.++|+|++||||||++++|.+.+ |.+.+||.++..- ....+..+++++|++.++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccc
Confidence 3667899999999999999999999999987 8999999887531 112233578889987554
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=4.4e-08 Score=100.45 Aligned_cols=51 Identities=27% Similarity=0.429 Sum_probs=45.7
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceE--EECCccCC
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV--MIDGKDIR 812 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I--~idG~di~ 812 (987)
.+.+..++..++|+.++|+|+|||||||++++|.+.+. ..|.+ .+||.++.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 46788888899999999999999999999999999987 67988 99987665
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=8e-08 Score=96.72 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=29.8
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC-CccEEE
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDP-NAGHVL 160 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~-~~G~i~ 160 (987)
.+|++++|+||||||||||++.|++.+++ ..|.|.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 37999999999999999999999999874 455554
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.21 E-value=3e-07 Score=100.95 Aligned_cols=69 Identities=23% Similarity=0.315 Sum_probs=57.1
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH----HHH-----hcccEEE-cccc
Q 001980 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL----KSL-----RLKIGLV-QQEP 830 (987)
Q Consensus 762 vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l----~~l-----R~~i~~V-pQdp 830 (987)
++++++|++++|+.++|+|++|+||||++..|.+.+.+.+|+|.+.+.|+..... ..+ |..+.++ +|.+
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 3577888899999999999999999999999999999999999999999865432 344 6678888 6654
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.1e-08 Score=116.45 Aligned_cols=127 Identities=17% Similarity=0.247 Sum_probs=89.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCC-Cchh-cHH
Q 001980 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPA-LFAT-TIL 193 (987)
Q Consensus 116 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~-l~~~-tv~ 193 (987)
..++++++++++| +.|+||+|+|||||+++|+++.. .|.+.++|.++.........+++.+++|+.. ..+. .+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~I 129 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI 129 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEE
Confidence 3688999999999 99999999999999999999875 7899999988765433334456777888764 3333 566
Q ss_pred HHH-hcCCCCC-----CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 001980 194 ENI-LYGKPEA-----TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 267 (987)
Q Consensus 194 eni-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts 267 (987)
|+| .++.... ..++..+.+ ...+. .|||||+|+..+++|...+|++ |||+.-
T Consensus 130 DEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 130 DEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp ECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred ehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 677 3332211 112221111 12221 3789999999999999999987 899876
Q ss_pred C
Q 001980 268 A 268 (987)
Q Consensus 268 ~ 268 (987)
.
T Consensus 188 r 188 (499)
T 2dhr_A 188 R 188 (499)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.19 E-value=3e-06 Score=94.98 Aligned_cols=123 Identities=17% Similarity=0.211 Sum_probs=81.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHH
Q 001980 774 QSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEV 853 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei 853 (987)
-++++||++|+|||||++.|.+.. + .+++.+..+.. ..++.++++..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~-~-----~~~~~~~~t~~-----~~~~~~~~~~~---------------------- 214 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK-P-----EIASYPFTTRG-----INVGQFEDGYF---------------------- 214 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC-C-----EEECCTTCSSC-----EEEEEEEETTE----------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-C-----ccCCCCCeeec-----eeEEEEEecCc----------------------
Confidence 479999999999999999998864 2 22222222111 12233332211
Q ss_pred HHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHcCC
Q 001980 854 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLD-EATSALDAESECVLQEALERLMRG 932 (987)
Q Consensus 854 ~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLD-EaTS~LD~~te~~I~~~l~~~~~~ 932 (987)
...+.| .|+-.+.+ ...+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+...+
T Consensus 215 -----~~~l~D----t~G~~~~~----~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~ 280 (357)
T 2e87_A 215 -----RYQIID----TPGLLDRP----ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKD 280 (357)
T ss_dssp -----EEEEEE----CTTTSSSC----STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTT
T ss_pred -----eEEEEe----CCCccccc----hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCC
Confidence 011221 23222222 2358999999887 66666777889999 999999999988888888877668
Q ss_pred CeEEEEe--cCch
Q 001980 933 RTTVLVA--HRLS 943 (987)
Q Consensus 933 ~TvI~Ia--HRl~ 943 (987)
+++|+|. |++.
T Consensus 281 ~piilV~NK~Dl~ 293 (357)
T 2e87_A 281 LPFLVVINKIDVA 293 (357)
T ss_dssp SCEEEEECCTTTC
T ss_pred CCEEEEEECcccC
Confidence 8999999 7774
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.19 E-value=4.8e-07 Score=92.58 Aligned_cols=45 Identities=18% Similarity=0.087 Sum_probs=25.1
Q ss_pred ECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccC
Q 001980 753 AYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 753 ~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
+|++++..++++||||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 466666667999999999999999999999999999999999876
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=7e-07 Score=100.34 Aligned_cols=45 Identities=29% Similarity=0.306 Sum_probs=35.0
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhc--cCCCCCceEEECC
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIER--FYDPTAGKVMIDG 808 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~r--l~~p~~G~I~idG 808 (987)
.+|++++++++ .|+|||++|||||||++.|.| +.++.+|.++-..
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 47999999998 999999999999999999999 7777777665443
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.2e-07 Score=100.19 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=35.7
Q ss_pred cEEEEeE-EEECCCCCCccceeeeeEEEeC---CcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 99 NIEFKNV-TFSYPSRPDVIIFRDFSIFFPA---GKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 99 ~i~~~~~-~~~y~~~~~~~~l~~i~l~i~~---G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.++++|+ +|+|++ ..++|+|+||+|++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 34599999999999 9999999999999999999999865
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.16 E-value=6.7e-07 Score=91.82 Aligned_cols=35 Identities=26% Similarity=0.165 Sum_probs=29.9
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 001980 123 IFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 157 (987)
Q Consensus 123 l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G 157 (987)
+++++|++++|+|||||||||++++|.+.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977655
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.13 E-value=6e-07 Score=98.59 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=56.5
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCH----HHH-----hcceEEE-cCCCCC
Q 001980 118 FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL----RWL-----RDQIGLV-NQEPAL 187 (987)
Q Consensus 118 l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~----~~~-----~~~i~~v-~Q~~~l 187 (987)
++++||++++|++++|+|++||||||++..|++.+.+..|+|.+.+.|...... ..+ +..+.++ +|.+..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 367888899999999999999999999999999999999999998877654321 233 4578898 676443
Q ss_pred c
Q 001980 188 F 188 (987)
Q Consensus 188 ~ 188 (987)
.
T Consensus 175 ~ 175 (320)
T 1zu4_A 175 D 175 (320)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.6e-07 Score=110.30 Aligned_cols=88 Identities=27% Similarity=0.301 Sum_probs=62.4
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCc-eEE-ECCccCCC-------CCH---HHHhcccEEEcccccccccc
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAG-KVM-IDGKDIRR-------LNL---KSLRLKIGLVQQEPALFAAS 836 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G-~I~-idG~di~~-------i~l---~~lR~~i~~VpQdp~lF~gT 836 (987)
.+++|+.++|+|+||||||||+++|.+.+.|.+| +|. +||.++.+ ++. ...++++++++|+. +
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l-----~ 439 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI-----T 439 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----H
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----H
Confidence 4789999999999999999999999999999887 784 99977642 222 23456789999873 3
Q ss_pred HHHHhccCCCC----CCHHHHHHHHHHcC
Q 001980 837 IFDNIAYGKEG----ATEAEVVEAARAAN 861 (987)
Q Consensus 837 IreNL~~~~~~----~sd~ei~~al~~a~ 861 (987)
..+|+.+.... ...++..+.++..+
T Consensus 440 ~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 440 KNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred hcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 44555432211 12345666777665
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=3.1e-07 Score=94.55 Aligned_cols=50 Identities=14% Similarity=0.179 Sum_probs=41.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG 199 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~ 199 (987)
++++|++++|+|++||||||+++.|.+.++ .+.+++|++.++++ +|+.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 567899999999999999999999999864 37888898887765 455443
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=5.8e-08 Score=99.56 Aligned_cols=59 Identities=25% Similarity=0.357 Sum_probs=44.7
Q ss_pred eEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE--EECCEeC
Q 001980 104 NVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV--LLDNVDI 166 (987)
Q Consensus 104 ~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i--~~~g~~~ 166 (987)
|++..+. .....+..++..++|++++|+||||||||||+++|++.+. ..|.+ .++|.++
T Consensus 4 ~~~~~~~---~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 4 NIKWHEC---SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp ------C---CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CCccccc---ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 4454443 2336678888889999999999999999999999999987 77888 8887544
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1.1e-06 Score=98.43 Aligned_cols=137 Identities=18% Similarity=0.233 Sum_probs=81.3
Q ss_pred EEEEcCCCCChHHHHHHHhccCC-----------CCCceEEECCccCCCCCHHHHhcccEEEcccccc----ccccHHHH
Q 001980 776 QALVGASGSGKSSVIALIERFYD-----------PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPAL----FAASIFDN 840 (987)
Q Consensus 776 vaIVG~sGsGKSTL~~lL~rl~~-----------p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~l----F~gTIreN 840 (987)
|+|||++|||||||++.|.+... |..|.|.++|.++. +-...|++.|.|.- |..|+. .
T Consensus 182 V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~-~ 254 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLS-E 254 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHH-G
T ss_pred EEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHH-H
Confidence 99999999999999999999765 67799999997652 22335666654431 222322 2
Q ss_pred hc------cCC--CCC---CHHHH---HHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH----HHH-ccC
Q 001980 841 IA------YGK--EGA---TEAEV---VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA----RAV-LKN 901 (987)
Q Consensus 841 L~------~~~--~~~---sd~ei---~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA----RAl-lr~ 901 (987)
+. +-. .+. .++++ .+.++..++.+ .| --.|..+-..+|+|++|++.++ +++ ..+
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~----~p---~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~ 327 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG----KP---ILVTLNKIDKINGDLYKKLDLVEKLSKELYSPI 327 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS----CC---EEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCC----CC---EEEEEECCCCCCchHHHHHHHHHHHHHHhcCCC
Confidence 21 100 011 11221 23333322211 11 0112333345788889988877 666 444
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHc
Q 001980 902 PAILLLDEATSALDAESECVLQEALERLM 930 (987)
Q Consensus 902 p~ILlLDEaTS~LD~~te~~I~~~l~~~~ 930 (987)
+++ +|||++|.+.-..+.+.|.+..
T Consensus 328 ~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 328 FDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred CcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 454 8999999999888888887654
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.09 E-value=6.6e-08 Score=112.25 Aligned_cols=138 Identities=19% Similarity=0.249 Sum_probs=89.7
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEE
Q 001980 746 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 825 (987)
Q Consensus 746 ~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~ 825 (987)
+++++...|. +..+++++++++++| +.|+||+|+|||||+++|.+... .|.|.++|.++.+......++++..
T Consensus 42 ~l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 3444444452 224789999999999 99999999999999999999875 7899999999877655556677778
Q ss_pred Eccccc-ccc-ccHHHHhcc-CCCC-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 826 VQQEPA-LFA-ASIFDNIAY-GKEG-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 826 VpQdp~-lF~-gTIreNL~~-~~~~-----~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
++|+.. .+. -.+-|+++. +... ...++..+.+.. ++. .|||||+|+..+++|
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~-----LL~---------------~Ldg~~~~~~viviA 174 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ-----LLV---------------EMDGFEKDTAIVVMA 174 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHH-----HHH---------------HGGGCCSSCCCEEEE
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHH-----HHH---------------HhcccccCccEEEEE
Confidence 888764 222 245677742 2211 112222222211 111 255666666666666
Q ss_pred HccCCCEEEEeCCCC
Q 001980 898 VLKNPAILLLDEATS 912 (987)
Q Consensus 898 llr~p~ILlLDEaTS 912 (987)
...+|++ ||||.-
T Consensus 175 atn~p~~--LD~aLl 187 (499)
T 2dhr_A 175 ATNRPDI--LDPALL 187 (499)
T ss_dssp CCSCGGG--SCTTTS
T ss_pred ecCChhh--cCcccc
Confidence 6666665 666654
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.07 E-value=5.5e-07 Score=90.59 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=46.7
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE--eCCCCCH----HHHhcceEEEcCCC
Q 001980 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV--DIKTLQL----RWLRDQIGLVNQEP 185 (987)
Q Consensus 119 ~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~--~~~~~~~----~~~~~~i~~v~Q~~ 185 (987)
+++++++.+| +++|+||||||||||+++|.+++.+..|.....+. ++-.... ...+..|.+++|+|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 6789999999 99999999999999999999988887665322221 1100000 01234688999986
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.4e-06 Score=89.00 Aligned_cols=45 Identities=18% Similarity=0.052 Sum_probs=24.9
Q ss_pred ECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 108 SYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 108 ~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+|+..+...+++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 455445567899999999999999999999999999999999866
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.5e-06 Score=96.32 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=41.7
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE-EECCEeCCCCCHHHHhcceEEEcCC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV-LLDNVDIKTLQLRWLRDQIGLVNQE 184 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i-~~~g~~~~~~~~~~~~~~i~~v~Q~ 184 (987)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++.+.. +. .+.+++++.+|+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~-~ra~rlgv~~~~ 115 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DP-VYAKNLGVDLKS 115 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CH-HHHHHHTCCGGG
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--ch-HHHHHcCCchhh
Confidence 378999999999999999999999999887777765 55553221 11 133445655554
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=3.7e-06 Score=92.87 Aligned_cols=128 Identities=20% Similarity=0.289 Sum_probs=73.2
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccC-CC------CCceEEECCccCCCCCHHHHhcc---cEEEccccccccccHH
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFY-DP------TAGKVMIDGKDIRRLNLKSLRLK---IGLVQQEPALFAASIF 838 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~-~p------~~G~I~idG~di~~i~l~~lR~~---i~~VpQdp~lF~gTIr 838 (987)
-+++|+.+.|+|++|||||||+..+..-. .+ ..+.++|+.... ++.+.+++. +++-++ .+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~--~~~~~l~~~~~~~g~~~~-------~~~ 173 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT--FRWERIENMAKALGLDID-------NVM 173 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CCHHHHHHHHHHTTCCHH-------HHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHhCCCHH-------HHh
Confidence 58999999999999999999998877643 33 234466655321 122322221 111000 011
Q ss_pred HHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh-hHHHHHHHHHHHc---cCCCEEEEeCCCCCC
Q 001980 839 DNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG-GQKQRIAIARAVL---KNPAILLLDEATSAL 914 (987)
Q Consensus 839 eNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSg-GQrQrlaLARAll---r~p~ILlLDEaTS~L 914 (987)
+|+.+.. ..+. -+.+.+..+++++ .+++++|+|+.|+-.
T Consensus 174 ~~l~~~~-------------------------------------~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 216 (324)
T 2z43_A 174 NNIYYIR-------------------------------------AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF 216 (324)
T ss_dssp HTEEEEE-------------------------------------CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHH
T ss_pred ccEEEEe-------------------------------------CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHh
Confidence 1111100 0122 2346777888888 569999999999876
Q ss_pred CHH-------HH--HHHHHHHH---HHc--CCCeEEEEecCc
Q 001980 915 DAE-------SE--CVLQEALE---RLM--RGRTTVLVAHRL 942 (987)
Q Consensus 915 D~~-------te--~~I~~~l~---~~~--~~~TvI~IaHRl 942 (987)
+.+ ++ ..+.+.++ ... .++|||++.|-.
T Consensus 217 ~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 217 RAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred hhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 432 11 23444333 322 289999999854
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=2.7e-06 Score=87.39 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=43.0
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcc---ccCCEEEEEe
Q 001980 239 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI---RNVDTVAVIQ 310 (987)
Q Consensus 239 LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~---~~~d~i~~l~ 310 (987)
.+.|+.+|..+++.++.+|+.+..+ .+.++|...+.+.+.+... .+.++|+-+|.+... +.+|.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 4688999999999998887644333 3345666666666555443 356888888877653 4589998885
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=4.7e-07 Score=94.91 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=49.5
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCC------CHHH----HhcccEEEcccccccc
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL------NLKS----LRLKIGLVQQEPALFA 834 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i------~l~~----lR~~i~~VpQdp~lF~ 834 (987)
+.++|+.++|+|++||||||++++|.++ +|+|.+++.|.... .+.. .++.+++++|++.++.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 4578999999999999999999999998 78999999886432 2221 2567899999887654
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.00 E-value=7.6e-07 Score=97.76 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=50.6
Q ss_pred ccccEEEEeEEEECCCCCCcccee--------------eeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 741 IRGEIELRHVDFAYPSRPDVVVFK--------------DFNLRIRAGQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 741 ~~g~I~f~~vsf~Y~~~~~~~vL~--------------~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
.+|.|.|+||+|.||.. ..+|+ |+++.|.+||+++|+|++|+|||||++.|.|+..
T Consensus 130 ~~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 130 ARNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HTTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred hcCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 46889999999999854 35788 8999999999999999999999999999999863
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.8e-05 Score=87.68 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=45.8
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceE-EECCccCCCCCHHHHhcccEEEccccc
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV-MIDGKDIRRLNLKSLRLKIGLVQQEPA 831 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I-~idG~di~~i~l~~lR~~i~~VpQdp~ 831 (987)
-+++|+.+.|.||+|||||||+..+.+...+.+|.+ +||+.+... ....+++++.+|+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLL 117 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhh
Confidence 488999999999999999999999999887777764 777654332 124566777766543
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.97 E-value=4.2e-06 Score=103.01 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=52.2
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHcCC-CeEEE-EecCchhhhc
Q 001980 883 QLSGGQKQRIAIARAVLKNPAILLLDEATS-ALDAESECVLQEALERLMRG-RTTVL-VAHRLSTIRG 947 (987)
Q Consensus 883 ~LSgGQrQrlaLARAllr~p~ILlLDEaTS-~LD~~te~~I~~~l~~~~~~-~TvI~-IaHRl~ti~~ 947 (987)
-+|.|+.+|..++++++.++++||+|||.. ++|.+.-..+.+.+....++ +++++ .||..+.+..
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 478999999999999999999999999997 89987766666767666544 45555 4898776654
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.95 E-value=9.6e-06 Score=90.88 Aligned_cols=61 Identities=18% Similarity=0.091 Sum_probs=47.6
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEe-CCCCCCChHHHHHHHHHHHhhhCCCeEEEEc--CCC
Q 001980 236 GVQLSGGQKQRIAIARAMLKNPKILLLD-EATSALDAGSESIVQEALDRLMVGRTTVVVA--HRL 297 (987)
Q Consensus 236 g~~LSgGqkqRialARal~~~~~illlD-Epts~LD~~~~~~i~~~l~~~~~~~tvi~vt--H~~ 297 (987)
...+|+|++|++. +.+...++-++++| ++.+++|......+.+.+.+...++.+|+|. ||+
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 3468999999887 66656777889999 9999999988777777776654478888888 554
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=2.9e-06 Score=87.14 Aligned_cols=69 Identities=20% Similarity=0.131 Sum_probs=44.0
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh---hccCEEEEEeC
Q 001980 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTI---RGVDCIGVVQD 956 (987)
Q Consensus 885 SgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti---~~~D~Iivl~~ 956 (987)
+.|+.+|..+++.+..+|..+-.+ ++.+++...+.+.+.+... .+.++|+-+|.+... ..||++++++.
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 678999999999988887644333 3345666666666655543 355788888877653 56899999864
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.92 E-value=6.9e-06 Score=101.08 Aligned_cols=66 Identities=14% Similarity=0.080 Sum_probs=51.6
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCC-CCChHHHHHHHHHHHhhhC-CCeEEE-EcCCCCccc
Q 001980 236 GVQLSGGQKQRIAIARAMLKNPKILLLDEATS-ALDAGSESIVQEALDRLMV-GRTTVV-VAHRLSTIR 301 (987)
Q Consensus 236 g~~LSgGqkqRialARal~~~~~illlDEpts-~LD~~~~~~i~~~l~~~~~-~~tvi~-vtH~~~~~~ 301 (987)
..-+|+|+.+|..++++++.+++++|+|||.. +||......+.+.+..... .+++++ +||+.+.+.
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 34589999999999999999999999999997 8998766666666655543 456666 489876554
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.87 E-value=1.9e-05 Score=89.61 Aligned_cols=161 Identities=18% Similarity=0.197 Sum_probs=93.2
Q ss_pred EEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH-HhcccEE
Q 001980 747 LRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS-LRLKIGL 825 (987)
Q Consensus 747 f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~-lR~~i~~ 825 (987)
.++++..|.+. . ++++|+ +|+.++++|++||||||++..|.+.+.+.+|+|.+.+.|+......+ |+..
T Consensus 79 ~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~--- 148 (425)
T 2ffh_A 79 YEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL--- 148 (425)
T ss_dssp HHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH---
T ss_pred HHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh---
Confidence 34455556322 1 567777 89999999999999999999999999999999999988886643322 2210
Q ss_pred EccccccccccHHHHhcc--CCCCCCHHHH-HHHHHHcCchhhHhhCCCcCCCccCCCCCCC---ChhHHHHHHHHHHHc
Q 001980 826 VQQEPALFAASIFDNIAY--GKEGATEAEV-VEAARAANVHGFVSALPNAYKTPVGERGVQL---SGGQKQRIAIARAVL 899 (987)
Q Consensus 826 VpQdp~lF~gTIreNL~~--~~~~~sd~ei-~~al~~a~l~~~i~~lp~gldt~vge~G~~L---SgGQrQrlaLARAll 899 (987)
.-+.|+.+ ..+..+..++ .++++.+. .+++|..+-+.+..+ ..-..++..+++++.
T Consensus 149 ----------~~~~gv~v~~~~~~~~p~~i~~~~l~~~~--------~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~ 210 (425)
T 2ffh_A 149 ----------GEKVGVPVLEVMDGESPESIRRRVEEKAR--------LEARDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (425)
T ss_dssp ----------HHHHTCCEEECCTTCCHHHHHHHHHHHHH--------HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred ----------cccCCccEEecCCCCCHHHHHHHHHHHHH--------HCCCCEEEEcCCCcccccHHHHHHHHHhhhccC
Confidence 00112221 1112234444 33443321 133443332222222 234667778888886
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEec
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH 940 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaH 940 (987)
-++-+|++| ++++.|.... + +.+.+. -+.+-+++++
T Consensus 211 pd~vlLVvD-a~tgq~av~~--a-~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 211 PDEVLLVLD-AMTGQEALSV--A-RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp CSEEEEEEE-GGGTTHHHHH--H-HHHHHH-TCCCEEEEES
T ss_pred CceEEEEEe-ccchHHHHHH--H-HHHHhc-CCceEEEEeC
Confidence 666788888 4556554422 2 233332 2446666665
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.82 E-value=1.6e-05 Score=90.37 Aligned_cols=41 Identities=29% Similarity=0.365 Sum_probs=36.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR 812 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~ 812 (987)
++..++++|++||||||++..|.+.+.+.++++.+-+.|+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 46889999999999999999999999988889988776653
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.79 E-value=3.5e-06 Score=99.74 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=46.8
Q ss_pred EEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 001980 747 LRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808 (987)
Q Consensus 747 f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG 808 (987)
++++..+|. ...+++++++++ +|+.+.|+||+|+|||||+++|.+...+..|.|.++|
T Consensus 86 ~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 86 LEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp CHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 344554552 224678888888 8999999999999999999999999988888887766
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.77 E-value=5.5e-05 Score=83.17 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=31.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
+.|+.+.--+++|+.+.|.||+|+||||++.-+..-.-
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35777766799999999999999999999987776543
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.74 E-value=9.2e-06 Score=83.08 Aligned_cols=48 Identities=15% Similarity=0.074 Sum_probs=41.8
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK 817 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~ 817 (987)
.++|+.++|+|++||||||+++.|.+.+++.+|.|.+.+.|....+..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~ 66 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERA 66 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHH
Confidence 567899999999999999999999999998899998888777655543
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.74 E-value=3.4e-05 Score=84.82 Aligned_cols=122 Identities=14% Similarity=0.191 Sum_probs=75.9
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHH
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENI 196 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni 196 (987)
.|+.+.--+++|+++.|.|++|+|||||+.-++.......+ .+.|++=+
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~-------------------~Vl~fSlE------------ 83 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR-------------------GVAVFSLE------------ 83 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------------EEEEEESS------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC-------------------eEEEEeCC------------
Confidence 45665556899999999999999999999888764432222 34443321
Q ss_pred hcCCCCCCHHHHHHHH----HHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChH
Q 001980 197 LYGKPEATMAEVEAAA----SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 272 (987)
Q Consensus 197 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~ 272 (987)
.+.+++..-+ ....+... . . ..||+++++|++.|...+.++++++.|+|...+|
T Consensus 84 ------ms~~ql~~Rlls~~~~v~~~~l-----------~--~-g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-- 141 (338)
T 4a1f_A 84 ------MSAEQLALRALSDLTSINMHDL-----------E--S-GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-- 141 (338)
T ss_dssp ------SCHHHHHHHHHHHHHCCCHHHH-----------H--H-TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH--
T ss_pred ------CCHHHHHHHHHHHhhCCCHHHH-----------h--c-CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH--
Confidence 1222222211 11111111 1 1 2699999999999999999999999999865433
Q ss_pred HHHHHHHHHHhhh--C-CCeEEEEc
Q 001980 273 SESIVQEALDRLM--V-GRTTVVVA 294 (987)
Q Consensus 273 ~~~~i~~~l~~~~--~-~~tvi~vt 294 (987)
.+...++++. . +..+|+|-
T Consensus 142 ---~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 142 ---QIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp ---HHHHHHHHHHHHCTTEEEEEEE
T ss_pred ---HHHHHHHHHHHhcCCCCEEEEe
Confidence 3334444332 2 45666664
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=4.2e-06 Score=83.45 Aligned_cols=38 Identities=29% Similarity=0.313 Sum_probs=33.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK 167 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~ 167 (987)
.+|++++|+|++||||||+++.|.+.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999875 88888876554
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=1.1e-05 Score=80.26 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=41.4
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhc-ccEEEcccc
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL-KIGLVQQEP 830 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~-~i~~VpQdp 830 (987)
.+|+.++|+|++||||||+++.|.+.+ |.+.+|+-++.. ...+++ .+++.+|++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~ 60 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLNDD 60 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCcc
Confidence 468999999999999999999999875 889999877753 222332 456666653
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.69 E-value=2.7e-05 Score=86.52 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=31.3
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccC-CC------CCceEEECCc
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFY-DP------TAGKVMIDGK 809 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~-~p------~~G~I~idG~ 809 (987)
-+++|+.+.|+|++|||||||+..+..-. .| ..+.++||..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 48899999999999999999998887742 22 2345666654
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.68 E-value=1e-05 Score=83.13 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=27.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDP 154 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~ 154 (987)
++|++++|+||||||||||++.|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 68999999999999999999999999987
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.66 E-value=6.6e-06 Score=90.38 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=48.0
Q ss_pred CccEEEEeEEEECCCCCCcccee--------------eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 97 NGNIEFKNVTFSYPSRPDVIIFR--------------DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 97 ~~~i~~~~~~~~y~~~~~~~~l~--------------~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.+.+.|+|+++.||.+ +..|+ |+++.+.+|+.++|+||+|+|||||++.|.+..
T Consensus 131 ~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3468899999999853 45788 899999999999999999999999999999875
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=1.4e-05 Score=83.62 Aligned_cols=39 Identities=26% Similarity=0.298 Sum_probs=35.0
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI 166 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~ 166 (987)
+.++|++++|.|+||||||||+++|.|. .|+|.+.+.|.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 4478999999999999999999999998 78899988765
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.64 E-value=1.1e-05 Score=82.56 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=37.6
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK 167 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~ 167 (987)
.++|++++|+|+||||||||++.|.+.+++..|.|.+.+.|..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 5688999999999999999999999999888898887665543
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00015 Score=81.82 Aligned_cols=44 Identities=18% Similarity=0.064 Sum_probs=33.4
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh----CCCeEEEEcCCCCc
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLM----VGRTTVVVAHRLST 299 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~vtH~~~~ 299 (987)
.+|.++++||+... |......+.+.+.++. .+.++|++||+.+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 45789999999876 8877777777775543 36688889998753
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=1.8e-05 Score=87.44 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=25.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
-+++|+++.|.||+|||||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 47899999999999999999998887653
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00022 Score=80.54 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=33.2
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc----CCCeEEEEecCchhh
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLM----RGRTTVLVAHRLSTI 945 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~----~~~TvI~IaHRl~ti 945 (987)
.+|.+|+|||+... |......+.+.+.+.. .+.++|+++|+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45789999999887 8777777766665432 367888999988543
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.54 E-value=1.3e-05 Score=87.59 Aligned_cols=43 Identities=14% Similarity=0.282 Sum_probs=33.9
Q ss_pred ceeeeeEEEeCCc------EEEEEcCCCCChHHHHHHHhccCC--CCCceE
Q 001980 762 VFKDFNLRIRAGQ------SQALVGASGSGKSSVIALIERFYD--PTAGKV 804 (987)
Q Consensus 762 vL~~vsl~I~~Ge------~vaIVG~sGsGKSTL~~lL~rl~~--p~~G~I 804 (987)
.|++++..+.+++ .+||+|+|||||||++++|.++++ |.+|.+
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v 125 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence 5566666666555 799999999999999999999987 445553
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.54 E-value=7e-05 Score=85.03 Aligned_cols=37 Identities=30% Similarity=0.346 Sum_probs=32.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g 163 (987)
++.+++++|++||||||++..|++.+.+..++|.+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 5789999999999999999999999988777776544
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.52 E-value=9.5e-05 Score=83.79 Aligned_cols=60 Identities=20% Similarity=0.239 Sum_probs=48.9
Q ss_pred EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCC
Q 001980 101 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK 167 (987)
Q Consensus 101 ~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~ 167 (987)
..+++++.|+... ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|..
T Consensus 78 v~~~L~~~~~~~~-----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 78 VYEALKEALGGEA-----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp HHHHHHHHTTSSC-----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred HHHHHHHHhCCCc-----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 3446677775321 567887 89999999999999999999999999999999988776654
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=3.1e-05 Score=89.17 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=46.0
Q ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHHHHHc-CCCeEEEEecCc-hhhhcc-CEEEE-EeCCEEEEecChh
Q 001980 901 NPAILLLDEATSALDA-ESECVLQEALERLM-RGRTTVLVAHRL-STIRGV-DCIGV-VQDGRIVEQGSHS 966 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~-~te~~I~~~l~~~~-~~~TvI~IaHRl-~ti~~~-D~Iiv-l~~G~ive~Gt~~ 966 (987)
++++|++||+..-.+. .+...+...+.+.. .++++|+++|+. ..+... +++.- ++.|.+++.+.|+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 8999999999887764 67777888887754 568889999984 333222 23322 5667777776654
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.47 E-value=1.1e-05 Score=88.04 Aligned_cols=42 Identities=17% Similarity=0.355 Sum_probs=34.4
Q ss_pred ceeeeeEEEeCCc------EEEEEcCCCccHHHHHHHHHcCCC--CCccE
Q 001980 117 IFRDFSIFFPAGK------TVAVVGGSGSGKSTVVSLIERFYD--PNAGH 158 (987)
Q Consensus 117 ~l~~i~l~i~~G~------~~~ivG~sGsGKSTLl~~l~g~~~--~~~G~ 158 (987)
.|++++..+.+++ +++|+||||||||||+++|.+++. |+.|.
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~ 124 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN 124 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe
Confidence 5667777776666 999999999999999999999987 34444
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=6.5e-06 Score=84.05 Aligned_cols=32 Identities=34% Similarity=0.498 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcc
Q 001980 774 QSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD 810 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~d 810 (987)
..|+|+|++||||||+.+.|.+. |...+|.-+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 46999999999999999999986 667776543
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=1.5e-05 Score=79.77 Aligned_cols=42 Identities=33% Similarity=0.511 Sum_probs=35.0
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccCCCCCc--eEEECCccCCC
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFYDPTAG--KVMIDGKDIRR 813 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G--~I~idG~di~~ 813 (987)
++|+.++|+|++||||||++++|.+.+.+ .| .|.+||..++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~~ 46 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIRQ 46 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHHH
Confidence 47999999999999999999999998876 56 77788766543
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.46 E-value=2.7e-05 Score=91.50 Aligned_cols=42 Identities=33% Similarity=0.236 Sum_probs=37.4
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEE-ECCEe
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG-HVL-LDNVD 165 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G-~i~-~~g~~ 165 (987)
.+++|++++|+|+||||||||+++|+|.+.|++| ++. +||.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 5789999999999999999999999999999987 674 88743
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00018 Score=79.93 Aligned_cols=28 Identities=11% Similarity=0.024 Sum_probs=25.7
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988875
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00069 Score=70.93 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=24.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccE
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYDPNAGH 158 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~~~~G~ 158 (987)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 57999999999999999999987766553
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00049 Score=74.67 Aligned_cols=70 Identities=21% Similarity=0.227 Sum_probs=44.3
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH----------HHHHHHHHHHHc-----CCCeEEEEecCchhh----
Q 001980 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAES----------ECVLQEALERLM-----RGRTTVLVAHRLSTI---- 945 (987)
Q Consensus 885 SgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~t----------e~~I~~~l~~~~-----~~~TvI~IaHRl~ti---- 945 (987)
+++++++-.+++|...+|.+|++||+.+-.+... ...+...+.... .+..+|..|++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 3577888888888888999999999988765422 122333343322 123566788886543
Q ss_pred -hccCEEEEE
Q 001980 946 -RGVDCIGVV 954 (987)
Q Consensus 946 -~~~D~Iivl 954 (987)
..+|+++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 346766554
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.35 E-value=2.7e-05 Score=86.63 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=37.6
Q ss_pred cceeeeeEEEeCCcE--EEEEcCCCCChHHHHHHHhccCCCCCc
Q 001980 761 VVFKDFNLRIRAGQS--QALVGASGSGKSSVIALIERFYDPTAG 802 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~--vaIVG~sGsGKSTL~~lL~rl~~p~~G 802 (987)
.+++.++..|+.|+. +.++||+|+||||+++++.+...+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 488999999999998 999999999999999999998766554
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00077 Score=73.09 Aligned_cols=70 Identities=20% Similarity=0.227 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHH----------HHHHHHHHHhhhC-----CCeEEEEcCCCCccc---
Q 001980 240 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGS----------ESIVQEALDRLMV-----GRTTVVVAHRLSTIR--- 301 (987)
Q Consensus 240 SgGqkqRialARal~~~~~illlDEpts~LD~~~----------~~~i~~~l~~~~~-----~~tvi~vtH~~~~~~--- 301 (987)
+++++.|..++++...+|.++++||+.+-++... ...+...+..... +..+|.+|++++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 3677888888888888999999999988765421 2234444444321 235667788765443
Q ss_pred --cCCEEEEE
Q 001980 302 --NVDTVAVI 309 (987)
Q Consensus 302 --~~d~i~~l 309 (987)
++++++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 35655544
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00023 Score=81.87 Aligned_cols=44 Identities=23% Similarity=0.419 Sum_probs=35.1
Q ss_pred cCCCEEEEeCCCCCCCh-HHHHHHHHHHHhhh-CCCeEEEEcCCCC
Q 001980 255 KNPKILLLDEATSALDA-GSESIVQEALDRLM-VGRTTVVVAHRLS 298 (987)
Q Consensus 255 ~~~~illlDEpts~LD~-~~~~~i~~~l~~~~-~~~tvi~vtH~~~ 298 (987)
.++++|++||+..-.+. .+++.+.+.+..+. .++.+|++||+..
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 38999999999887765 57778888887764 4788999999843
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00026 Score=74.09 Aligned_cols=135 Identities=13% Similarity=0.172 Sum_probs=70.1
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccc-cccHHHHhccCCCCC
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALF-AASIFDNIAYGKEGA 848 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF-~gTIreNL~~~~~~~ 848 (987)
+..|+.+.++|+|||||||++.++..-.....|. ...+.++.|.|... .-++.+|+.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 3568999999999999999876553211111111 23467777877643 345666664211100
Q ss_pred CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCC---CChhHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHH
Q 001980 849 TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ---LSGGQKQRIAIARAVLKNPAILLLDEATS-ALDAESECVLQE 924 (987)
Q Consensus 849 sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~---LSgGQrQrlaLARAllr~p~ILlLDEaTS-~LD~~te~~I~~ 924 (987)
- ...++... ..+......+.. -..|.-.+. .+.-+++-+++|+||+-. ++|......+.+
T Consensus 137 ~-------~~~~g~~~-------~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~ 200 (235)
T 3llm_A 137 P-------GKSCGYSV-------RFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLR 200 (235)
T ss_dssp T-------TSSEEEEE-------TTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHH
T ss_pred c-------CceEEEee-------chhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHH
Confidence 0 00000000 000000000101 234554444 344689999999999976 577666544555
Q ss_pred HHHHHcCCCeEE
Q 001980 925 ALERLMRGRTTV 936 (987)
Q Consensus 925 ~l~~~~~~~TvI 936 (987)
.+.....++.+|
T Consensus 201 ~i~~~~~~~~~i 212 (235)
T 3llm_A 201 DVVQAYPEVRIV 212 (235)
T ss_dssp HHHHHCTTSEEE
T ss_pred HHHhhCCCCeEE
Confidence 555555444333
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00097 Score=69.81 Aligned_cols=28 Identities=32% Similarity=0.271 Sum_probs=23.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCCCc
Q 001980 775 SQALVGASGSGKSSVIALIERFYDPTAG 802 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~p~~G 802 (987)
+|+|+|++|+|||||++.|++-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5899999999999999999987665554
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0001 Score=84.96 Aligned_cols=61 Identities=26% Similarity=0.358 Sum_probs=39.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhccC------------CCCCceEEECCccCCCCCHHHHhcccEEEcccccccc
Q 001980 774 QSQALVGASGSGKSSVIALIERFY------------DPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA 834 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~------------~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~ 834 (987)
-+++|||++|+|||||++.|.|.. ++.+|.+.++|.++.-++..-+|+...+.+|....|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 369999999999999999999874 3678999999987665555555666677777665554
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.26 E-value=3.7e-05 Score=90.87 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=42.0
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCE
Q 001980 116 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV 164 (987)
Q Consensus 116 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~ 164 (987)
.+++++++++ +|+.++|+||+|+|||||+++|++.+.+..|+|.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 3567788887 89999999999999999999999999998888877763
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00026 Score=77.07 Aligned_cols=145 Identities=16% Similarity=0.144 Sum_probs=75.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC-CccCCCCCHHHHhcccEEEcccccc--ccccHHHHhccCCCCC
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID-GKDIRRLNLKSLRLKIGLVQQEPAL--FAASIFDNIAYGKEGA 848 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~id-G~di~~i~l~~lR~~i~~VpQdp~l--F~gTIreNL~~~~~~~ 848 (987)
++.+|+|||++|+|||||++.|.+.- +.+. +.+-. ..++..++++|+..- |-.| +| .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i~~iDT------pG---~ 66 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQAIYVDT------PG---L 66 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEEEEESS------SS---C
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeEEEEEC------cC---C
Confidence 34589999999999999999999852 2221 11111 123456788877532 2122 22 2
Q ss_pred CHHHHHHHHHHcCchhhHhhCCCcCCCcc--CCCCCCCChhHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH-HHHHH
Q 001980 849 TEAEVVEAARAANVHGFVSALPNAYKTPV--GERGVQLSGGQKQRIAIARAVL--KNPAILLLDEATSALDAES-ECVLQ 923 (987)
Q Consensus 849 sd~ei~~al~~a~l~~~i~~lp~gldt~v--ge~G~~LSgGQrQrlaLARAll--r~p~ILlLDEaTS~LD~~t-e~~I~ 923 (987)
.. +-...+...-.......+ ...|..+ -+. .++|+|++ .+++++. ..|.||++ +-+|... ...+.
T Consensus 67 ~~-~~~~~l~~~~~~~~~~~l-~~~D~vl~Vvd~-~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~ 136 (301)
T 1ega_A 67 HM-EEKRAINRLMNKAASSSI-GDVELVIFVVEG-TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLL 136 (301)
T ss_dssp CH-HHHHHHHHHHTCCTTSCC-CCEEEEEEEEET-TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHH
T ss_pred Cc-cchhhHHHHHHHHHHHHH-hcCCEEEEEEeC-CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHH
Confidence 20 011111110000000001 1111111 111 22899887 4566665 67889998 6788776 55566
Q ss_pred HHHHHHcC--C--CeEEEEecCchhhh
Q 001980 924 EALERLMR--G--RTTVLVAHRLSTIR 946 (987)
Q Consensus 924 ~~l~~~~~--~--~TvI~IaHRl~ti~ 946 (987)
+.+.+..+ + .++.+.||.-..+.
T Consensus 137 ~~l~~l~~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 137 PHLQFLASQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp HHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred HHHHHHHHhcCcCceEEEECCCCCCHH
Confidence 66665543 2 24555677655443
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=5.9e-05 Score=76.70 Aligned_cols=56 Identities=21% Similarity=0.453 Sum_probs=37.6
Q ss_pred EEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhc----cC----CCCCceEEECCc
Q 001980 751 DFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIER----FY----DPTAGKVMIDGK 809 (987)
Q Consensus 751 sf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~r----l~----~p~~G~I~idG~ 809 (987)
+++|++- .++++++|+..+++ +|+++|++|+|||||++.+.+ .+ .++.+.+.++|.
T Consensus 6 ~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 6 DWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred HHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 4567543 35899999998887 699999999999999999986 22 233455666653
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00033 Score=76.75 Aligned_cols=35 Identities=6% Similarity=0.082 Sum_probs=30.3
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~r 795 (987)
+.|+++.--+++|+.+.|.|++|+||||++.-+..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 46777776699999999999999999999877764
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.23 E-value=3.7e-05 Score=85.46 Aligned_cols=52 Identities=15% Similarity=0.136 Sum_probs=46.2
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR 812 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~ 812 (987)
.+++++++.+++|.+++|+|++|+||||+++.|.+.+.+.+|++.+-+.|..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 4788999999999999999999999999999999999888888877666654
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.22 E-value=9e-05 Score=83.47 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=26.2
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccCCCC
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFYDPT 800 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~ 800 (987)
+++..+.|+|++|+|||||++.+.+...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457789999999999999999999887654
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00037 Score=76.42 Aligned_cols=127 Identities=10% Similarity=0.104 Sum_probs=74.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHH
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENI 196 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni 196 (987)
.|+++.--+++|+++.|.|++|+|||||+..++...-. .| ..+.|+.=+
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~slE------------ 105 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSLE------------ 105 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEESS------------
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEECC------------
Confidence 56776656899999999999999999999877643211 11 134444322
Q ss_pred hcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcc-cccCCC-CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHH
Q 001980 197 LYGKPEATMAEVEAAASAANAHSFITLLPNGYST-QVGERG-VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274 (987)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~~~~g-~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~ 274 (987)
.+.+++..-+... .. |.+. .+- .| ..||+++++|++.|...+.++++++.|+|... .
T Consensus 106 ------~s~~~l~~R~~~~-----~~----~i~~~~l~-~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--~--- 164 (315)
T 3bh0_A 106 ------MGKKENIKRLIVT-----AG----SINAQKIK-AARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS--V--- 164 (315)
T ss_dssp ------SCHHHHHHHHHHH-----HT----TCCHHHHH-SCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB--H---
T ss_pred ------CCHHHHHHHHHHH-----Hc----CCCHHHHh-cCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC--H---
Confidence 1222222111100 00 1110 010 11 12899999999999999999999999998643 2
Q ss_pred HHHHHHHHhhh--CCCe--EEEEcC
Q 001980 275 SIVQEALDRLM--VGRT--TVVVAH 295 (987)
Q Consensus 275 ~~i~~~l~~~~--~~~t--vi~vtH 295 (987)
..+.+.++++. .+.. +|+|-|
T Consensus 165 ~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 165 NYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 23344444432 2445 777654
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00018 Score=82.83 Aligned_cols=60 Identities=23% Similarity=0.253 Sum_probs=37.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC------------CCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCc
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFYD------------PNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALF 188 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~~------------~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~ 188 (987)
-.++|+|++|+|||||++.|+|... +..|.+.++|.++.-+|....++...+.+|....|
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~ 252 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKY 252 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCS
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHH
Confidence 3799999999999999999999853 67899999998765444433344444444544333
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00011 Score=81.87 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=36.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCC
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL 814 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i 814 (987)
++.+|+|+|++|||||||++.|.+.+.+.+|+|.+.+.|..+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 4678999999999999999999999998999999988877643
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=9.2e-05 Score=76.92 Aligned_cols=70 Identities=20% Similarity=0.224 Sum_probs=42.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc---CCCCCceE--------EECCccCCCCC-HHHHhcccEEEc------ccccccc
Q 001980 773 GQSQALVGASGSGKSSVIALIERF---YDPTAGKV--------MIDGKDIRRLN-LKSLRLKIGLVQ------QEPALFA 834 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl---~~p~~G~I--------~idG~di~~i~-l~~lR~~i~~Vp------Qdp~lF~ 834 (987)
.-.++|+|++||||||+.+.|.+. .-.+.|.+ .-.|+|+.+.. +..+-..+.+.. |+.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 348999999999999999999844 33445554 23455554432 344555555554 3344544
Q ss_pred ccHHHHhc
Q 001980 835 ASIFDNIA 842 (987)
Q Consensus 835 gTIreNL~ 842 (987)
..|.+||.
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 55555553
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0018 Score=68.55 Aligned_cols=46 Identities=26% Similarity=0.387 Sum_probs=30.0
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccC
Q 001980 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI 811 (987)
Q Consensus 762 vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di 811 (987)
.++++++.+++| +.|+|++|+||||++++|.+..... -+.+++.++
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~ 81 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence 345555555555 9999999999999999999876422 355555443
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00015 Score=71.77 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFYDP 154 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~~~ 154 (987)
.|++++|+|++|||||||++.|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4788999999999999999999998754
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00016 Score=78.77 Aligned_cols=140 Identities=16% Similarity=0.166 Sum_probs=72.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE-CCEeCCCCCHHHHhcceEEEcCCCCC--chhcHHHHHhcCCCCC
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL-DNVDIKTLQLRWLRDQIGLVNQEPAL--FATTILENILYGKPEA 203 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~v~Q~~~l--~~~tv~eni~~~~~~~ 203 (987)
++.+++|+|++|+|||||++.|+|.- +.+ .+.+-.. .....+++.++..- |-+| |..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~tT-----r~~~~gi~~~~~~~i~~iDT---------pG~ 66 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQTT-----RHRIVGIHTEGAYQAIYVDT---------PGL 66 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSCC-----SSCEEEEEEETTEEEEEESS---------SSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCcc-----eeeEEEEEEECCeeEEEEEC---------cCC
Confidence 44589999999999999999999963 111 1111111 12345777765421 1111 111
Q ss_pred CHHHHHHHHHHHhHHHHHHhCCCCC---cc---cccCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCCChHH-H
Q 001980 204 TMAEVEAAASAANAHSFITLLPNGY---ST---QVGERGVQLSGGQKQRIAIARAML--KNPKILLLDEATSALDAGS-E 274 (987)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~g~---~t---~~~~~g~~LSgGqkqRialARal~--~~~~illlDEpts~LD~~~-~ 274 (987)
.. +....... .+.......+ +. .+.. ..+|+|++ .+++++. ..|.++++ +.+|... .
T Consensus 67 ~~-~~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~ 132 (301)
T 1ega_A 67 HM-EEKRAINR----LMNKAASSSIGDVELVIFVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEK 132 (301)
T ss_dssp CH-HHHHHHHH----HHTCCTTSCCCCEEEEEEEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCH
T ss_pred Cc-cchhhHHH----HHHHHHHHHHhcCCEEEEEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccH
Confidence 10 11111100 1111111111 11 1222 23999886 5566665 67888888 7888876 5
Q ss_pred HHHHHHHHhhhC--CC--eEEEEcCCCCcc
Q 001980 275 SIVQEALDRLMV--GR--TTVVVAHRLSTI 300 (987)
Q Consensus 275 ~~i~~~l~~~~~--~~--tvi~vtH~~~~~ 300 (987)
..+.+.+.++.+ +. .+.+.+|+-.-+
T Consensus 133 ~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 133 ADLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp HHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred HHHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 667677766643 32 444555655444
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.13 E-value=4.7e-05 Score=84.61 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=37.0
Q ss_pred cceeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCCCCcc
Q 001980 116 IIFRDFSIFFPAGKT--VAVVGGSGSGKSTVVSLIERFYDPNAG 157 (987)
Q Consensus 116 ~~l~~i~l~i~~G~~--~~ivG~sGsGKSTLl~~l~g~~~~~~G 157 (987)
.+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 477888888999998 999999999999999999998766544
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00038 Score=78.27 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=26.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPN 155 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~ 155 (987)
.++..+.|.||+|+|||||++.+.+.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999877553
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=8.4e-05 Score=74.21 Aligned_cols=38 Identities=37% Similarity=0.394 Sum_probs=31.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc--EEEECCE
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG--HVLLDNV 164 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G--~i~~~g~ 164 (987)
++|++++|+|++||||||+++.|.+.+++ .| .+.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECCh
Confidence 47999999999999999999999998766 56 6666653
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00025 Score=71.44 Aligned_cols=33 Identities=18% Similarity=0.488 Sum_probs=20.9
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 001980 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 762 vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~r 795 (987)
+++++|+..++. +|+++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 789999998877 899999999999999999987
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0017 Score=68.72 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=27.5
Q ss_pred eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 001980 118 FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163 (987)
Q Consensus 118 l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g 163 (987)
++++++..++| +.|+||+|+|||||+++|++.+... -+.+++
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~ 78 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISG 78 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeH
Confidence 34444444544 8999999999999999999876422 344544
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00024 Score=74.08 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=32.8
Q ss_pred eeeeeEEEe---CCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 001980 763 FKDFNLRIR---AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808 (987)
Q Consensus 763 L~~vsl~I~---~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG 808 (987)
|.++|+.+. +|..+.|.|++||||||+++.|...+.+ .+.+....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 566666665 8999999999999999999999999987 66665443
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0001 Score=75.88 Aligned_cols=44 Identities=32% Similarity=0.384 Sum_probs=38.1
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCc--eEEECCccC
Q 001980 768 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG--KVMIDGKDI 811 (987)
Q Consensus 768 l~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G--~I~idG~di 811 (987)
+.+++|..+.|+|++||||||+++.|.+.+.|..| .+.+||-++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 34678999999999999999999999999988888 888886443
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00013 Score=74.64 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=37.8
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCC-CCceE----------EECCccCCCCCHHHHhcc
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYDP-TAGKV----------MIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p-~~G~I----------~idG~di~~i~l~~lR~~ 822 (987)
+..+|..++|+|+|||||||+++.|...++. ....+ .+||.+..-++.+.++..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~ 72 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERK 72 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHH
Confidence 3467899999999999999999999987642 11111 246666666666666543
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0003 Score=67.95 Aligned_cols=30 Identities=33% Similarity=0.541 Sum_probs=24.6
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 001980 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIE 149 (987)
Q Consensus 119 ~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~ 149 (987)
++..+++.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4455666654 99999999999999999986
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00022 Score=70.48 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG 808 (987)
.|+.++|+|++||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4688999999999999999999998754 66765
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.04 E-value=6.1e-05 Score=83.63 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=41.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g 163 (987)
+++++++++.+|.+++|+|++|+|||||++.|++.+.+..|++.+-+
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 67888999999999999999999999999999999888777766544
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0028 Score=70.32 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=33.2
Q ss_pred cceeeee--EEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-CceEEECC
Q 001980 761 VVFKDFN--LRIRAGQSQALVGASGSGKSSVIALIERFYDPT-AGKVMIDG 808 (987)
Q Consensus 761 ~vL~~vs--l~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~-~G~I~idG 808 (987)
+.|+.+- =-+++|+.+.|.|++|+|||||+..+..-.... ...++||.
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3466552 138899999999999999999997776543222 23455554
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00023 Score=74.09 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=31.5
Q ss_pred eeeeeEEEe---CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE
Q 001980 118 FRDFSIFFP---AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL 161 (987)
Q Consensus 118 l~~i~l~i~---~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~ 161 (987)
|.++|+.+. +|.+++|.|++||||||+++.|...+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 566666665 8999999999999999999999999887 665543
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00036 Score=69.03 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccC
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
++|.+|+|||++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999999864
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00041 Score=72.51 Aligned_cols=123 Identities=16% Similarity=0.198 Sum_probs=67.1
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchh-cHHHHHhcCCCCC
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEA 203 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~ 203 (987)
+.+|+.++|+||+||||||++.+++.......|. ...+.++.+.|..... ++.+|+.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 3578999999999999999888765322111111 1246777777765433 6666664221100
Q ss_pred CHHHHHHHHHHHhHHHHHHhCCCCCcc----cccCC---CCCCChHHHHHHHHHHHhccCCCEEEEeCCCC-CCChHHHH
Q 001980 204 TMAEVEAAASAANAHSFITLLPNGYST----QVGER---GVQLSGGQKQRIAIARAMLKNPKILLLDEATS-ALDAGSES 275 (987)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~g~~t----~~~~~---g~~LSgGqkqRialARal~~~~~illlDEpts-~LD~~~~~ 275 (987)
- + ...|+.. ..... ..=.+.|+-.+.. +.-+++-+++++||+-. ++|.....
T Consensus 137 ~-----------~-------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 137 P-----------G-------KSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp T-----------T-------SSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHH
T ss_pred c-----------C-------ceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHH
Confidence 0 0 0001110 00000 0113456666653 34689999999999976 46666543
Q ss_pred HHHHHHHh
Q 001980 276 IVQEALDR 283 (987)
Q Consensus 276 ~i~~~l~~ 283 (987)
...+.+..
T Consensus 197 ~~l~~i~~ 204 (235)
T 3llm_A 197 VVLRDVVQ 204 (235)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 33444433
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0012 Score=71.69 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=27.3
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 001980 123 IFFPAGKTVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 123 l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
+.++++..+.|.||+|+|||||++++++...
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3467889999999999999999999998763
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00084 Score=68.19 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=23.1
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCC
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFYDP 154 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~~~ 154 (987)
..+.|.||+|+|||||++.+......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999986644
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.001 Score=73.11 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=30.1
Q ss_pred ccCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHc-CCCeEEEEecCc
Q 001980 899 LKNPAILLLDEATSA-LDAESECVLQEALERLM-RGRTTVLVAHRL 942 (987)
Q Consensus 899 lr~p~ILlLDEaTS~-LD~~te~~I~~~l~~~~-~~~TvI~IaHRl 942 (987)
++++++|++||+..- -|..+...+...+.... .++.+|+.+++.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 467999999998763 33467777777777654 456666666643
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00019 Score=79.83 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=35.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI 166 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~ 166 (987)
+++.+++|+|++|||||||++.|+|.+.+.+|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 45779999999999999999999999988888887765443
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00015 Score=74.50 Aligned_cols=41 Identities=29% Similarity=0.245 Sum_probs=36.4
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc--EEEECC
Q 001980 123 IFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG--HVLLDN 163 (987)
Q Consensus 123 l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G--~i~~~g 163 (987)
+.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 44678999999999999999999999999987888 777775
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0012 Score=76.25 Aligned_cols=58 Identities=12% Similarity=0.089 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh
Q 001980 886 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTI 945 (987)
Q Consensus 886 gGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti 945 (987)
+.|++....++..+++++++|+......-....+..+.+.+++ .++.+|+|.++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccch
Confidence 4588888999999999998877655544334445566666654 478899999988765
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0011 Score=72.93 Aligned_cols=44 Identities=16% Similarity=0.263 Sum_probs=30.3
Q ss_pred ccCCCEEEEeCCCCCC-ChHHHHHHHHHHHhhh-CCCeEEEEcCCC
Q 001980 254 LKNPKILLLDEATSAL-DAGSESIVQEALDRLM-VGRTTVVVAHRL 297 (987)
Q Consensus 254 ~~~~~illlDEpts~L-D~~~~~~i~~~l~~~~-~~~tvi~vtH~~ 297 (987)
+.++++|++||+-.-- +..+.+.+...+..+. .++.+|+++++.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4579999999986532 3366777777777654 466677776643
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00027 Score=71.78 Aligned_cols=42 Identities=14% Similarity=0.413 Sum_probs=30.7
Q ss_pred EEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 001980 106 TFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 106 ~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++|++- ..+++++|++.+++ .++|+|++|+|||||++.+.+
T Consensus 6 ~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 4556643 34789999988777 578999999999999999987
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00018 Score=73.41 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=26.5
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
...+|.+++|+||||||||||.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999998774
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0013 Score=66.67 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhccCCCC
Q 001980 774 QSQALVGASGSGKSSVIALIERFYDPT 800 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~~p~ 800 (987)
..+.|.|++|+|||||++++.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 679999999999999999999876543
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0022 Score=68.86 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=24.7
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+.++.-+.|.||+|+|||||++.++..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3567789999999999999999999875
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00083 Score=67.54 Aligned_cols=33 Identities=15% Similarity=0.476 Sum_probs=20.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g 150 (987)
++++++++.++. .++++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 678899988777 789999999999999999987
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00057 Score=71.24 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
++..+.|.||+|+|||||++.+...+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987654
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00094 Score=65.96 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
++|..++|+|++|+|||||++.+.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00028 Score=76.47 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=44.3
Q ss_pred ee-eeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC
Q 001980 764 KD-FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 815 (987)
Q Consensus 764 ~~-vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~ 815 (987)
++ ++|+++ |+.++++|++|+||||++..|.+.+.+.+|++.+.+.|+..-.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~ 140 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPA 140 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSH
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHH
Confidence 45 677766 9999999999999999999999999988999999888876543
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00011 Score=74.93 Aligned_cols=69 Identities=17% Similarity=0.324 Sum_probs=37.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcc------CCCCCceEEECCc--cCCCCCH--------HHHhcccEEEccccccccccHH
Q 001980 775 SQALVGASGSGKSSVIALIERF------YDPTAGKVMIDGK--DIRRLNL--------KSLRLKIGLVQQEPALFAASIF 838 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl------~~p~~G~I~idG~--di~~i~l--------~~lR~~i~~VpQdp~lF~gTIr 838 (987)
.|+|+|++||||||+++.|.+. .+|..|...++.. |....+. ..+++....+.|+.++++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 6899999999999999999983 3444343222211 1000110 0123334566777788888887
Q ss_pred HHhcc
Q 001980 839 DNIAY 843 (987)
Q Consensus 839 eNL~~ 843 (987)
+|+.+
T Consensus 82 ~~~~~ 86 (205)
T 2jaq_A 82 EDPIF 86 (205)
T ss_dssp THHHH
T ss_pred hhHHH
Confidence 77654
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.003 Score=67.82 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=24.3
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccC
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
++++.-+-|.||+|+||||+++++.+..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999998764
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0016 Score=70.91 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhccCCCCCce
Q 001980 774 QSQALVGASGSGKSSVIALIERFYDPTAGK 803 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~~p~~G~ 803 (987)
..+.|+||+|+||||++++|.+...+.+|.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~ 77 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEA 77 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcc
Confidence 468999999999999999999988776654
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00093 Score=73.46 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=24.5
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhc
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~r 795 (987)
-+++|+.+.|.|++|||||||+.-+..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999987764
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.001 Score=64.09 Aligned_cols=31 Identities=32% Similarity=0.529 Sum_probs=24.8
Q ss_pred eeeeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 001980 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 764 ~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~r 795 (987)
++.++++.+| ..+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455566555 889999999999999999863
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0012 Score=68.65 Aligned_cols=28 Identities=21% Similarity=0.140 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCCC
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYDP 799 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~p 799 (987)
++..+.|+|++|+||||+++.+.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876653
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0034 Score=69.59 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=25.1
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+++|+++.|.|++|||||||+..++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998877544
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0032 Score=68.34 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=30.4
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC
Q 001980 768 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 807 (987)
Q Consensus 768 l~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~id 807 (987)
+.++++..+.|.||+|+|||||+++|.+... .+-+.++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~ 81 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIK 81 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEEC
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEE
Confidence 3467889999999999999999999998763 3445444
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00092 Score=66.92 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=26.6
Q ss_pred eeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 001980 120 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 120 ~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 47888899999999999999999999999875
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00096 Score=74.61 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=34.6
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcc-----------CCCCCceEEECCc
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERF-----------YDPTAGKVMIDGK 809 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl-----------~~p~~G~I~idG~ 809 (987)
.+..|.+++|||++|+|||||+++|.+. .+|+.|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567889999999999999999999998 6788899988774
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00012 Score=76.02 Aligned_cols=33 Identities=30% Similarity=0.339 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHH---cCCCCCccEE
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIE---RFYDPNAGHV 159 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~---g~~~~~~G~i 159 (987)
..-+++|.||+||||||+.+.|+ |+...+.|.+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 34589999999999999999998 4444455555
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.00026 Score=79.06 Aligned_cols=58 Identities=21% Similarity=0.171 Sum_probs=36.5
Q ss_pred cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 001980 742 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808 (987)
Q Consensus 742 ~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG 808 (987)
.|.|.|+|++..|. ...++++++|+| +|||++|+|||||++.|++...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~---~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHH---THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhC---CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 46799999998884 235789999977 99999999999999999987665555544443
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0013 Score=68.32 Aligned_cols=45 Identities=20% Similarity=0.162 Sum_probs=33.6
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTI 945 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti 945 (987)
.++.+|++||+-. +|.+....+.+.+.+...+..+|+++++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 3578999999876 78877777777776544566788888887644
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0068 Score=57.92 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPN 155 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~ 155 (987)
..+.-+.|.||+|+|||++++.|.......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 345568999999999999999998876543
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0012 Score=66.06 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=26.6
Q ss_pred eeeEEEeCCcEEEEEcCCCCChHHHHHHHhcc
Q 001980 765 DFNLRIRAGQSQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 765 ~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl 796 (987)
++|+..++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 47888889999999999999999999999876
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0014 Score=64.93 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=30.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhccCCCC---CceEEECCcc
Q 001980 774 QSQALVGASGSGKSSVIALIERFYDPT---AGKVMIDGKD 810 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~~p~---~G~I~idG~d 810 (987)
..++|+|+||||||||++.|.+.+.+. -|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 578999999999999999999876543 3778887755
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0012 Score=73.47 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=34.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTI 945 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti 945 (987)
+++||++|| ...++..+...+.+.+.+...+..+|+++++...+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI 176 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhC
Confidence 567999999 67788888888888888765556677788777543
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0021 Score=62.87 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhccC
Q 001980 774 QSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
-+++|+|++|+|||||++.|.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999999864
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0016 Score=66.40 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=24.4
Q ss_pred eeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 001980 119 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIE 149 (987)
Q Consensus 119 ~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~ 149 (987)
.+.++.+.+ .+++|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 345566655 499999999999999999885
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.00088 Score=67.10 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=30.6
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i 159 (987)
..+|.+++|+|++||||||+++.|.+.+.+..|.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 35789999999999999999999999887766665
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0035 Score=68.25 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=26.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i 159 (987)
..+.|+||+|+||||+++.|.+.+.+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5789999999999999999999887766643
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0078 Score=57.48 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccCCC
Q 001980 773 GQSQALVGASGSGKSSVIALIERFYDP 799 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl~~p 799 (987)
+.-|-|.|++|+|||+++++|......
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 445899999999999999999876543
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0017 Score=72.65 Aligned_cols=40 Identities=28% Similarity=0.432 Sum_probs=30.9
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcC-----------CCCCccEEEECC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERF-----------YDPNAGHVLLDN 163 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~-----------~~~~~G~i~~~g 163 (987)
.+..|..++|||++|+|||||++.|+|. ..|+.|.+.+++
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 3467889999999999999999999997 456666665544
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0048 Score=70.95 Aligned_cols=38 Identities=11% Similarity=0.112 Sum_probs=31.8
Q ss_pred cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 761 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 761 ~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
+.|+.+.--+++|+.+.|.||+|+||||++.-+..-.-
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45777775699999999999999999999987776543
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.31 E-value=0.00043 Score=74.94 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=46.1
Q ss_pred EEEeEEEECCCCCCccceee-eeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 001980 101 EFKNVTFSYPSRPDVIIFRD-FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI 166 (987)
Q Consensus 101 ~~~~~~~~y~~~~~~~~l~~-i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~ 166 (987)
..+++...|++.. ++ ++++.+ |++++++|++|+||||++..|++.+.+..|++.+.+.|.
T Consensus 76 ~~~~l~~~~~~~~-----~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 76 VYDELSNLFGGDK-----EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp HHHHHHHHTTCSC-----CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHHHhcccc-----ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3445666675321 45 777766 999999999999999999999999988888877655443
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0017 Score=64.76 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 001980 774 QSQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl 796 (987)
-+|+|+|++|+|||||++.|.+-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999873
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0035 Score=61.19 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
.++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999643
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0015 Score=65.30 Aligned_cols=39 Identities=28% Similarity=0.494 Sum_probs=33.1
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceE-EECC
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV-MIDG 808 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I-~idG 808 (987)
.++|..+.|+|.+||||||+++.|.+.+.+.+|.+ .+|+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 45789999999999999999999999988777765 4554
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0014 Score=64.82 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=27.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCC---ccEEEECC
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFYDPN---AGHVLLDN 163 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~~~~---~G~i~~~g 163 (987)
..++|+|++|||||||++.|.+.+.+. -|.|..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 589999999999999999999876543 35555554
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.015 Score=65.80 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEE
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 806 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~i 806 (987)
++..+.++|++|+||||++..|.+.+....-++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 35689999999999999999999887755445544
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0015 Score=69.11 Aligned_cols=41 Identities=27% Similarity=0.482 Sum_probs=33.9
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR 812 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~ 812 (987)
.+++..+.|+|++||||||+.+.|.+.+. .|.+.+||-+++
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 45677899999999999999999998875 367888886554
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0016 Score=66.23 Aligned_cols=35 Identities=40% Similarity=0.506 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccC
Q 001980 773 GQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI 811 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di 811 (987)
...|+|+|++||||||+++.|.+.+ |...+|+-++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4579999999999999999998876 5566665443
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0013 Score=73.13 Aligned_cols=43 Identities=16% Similarity=0.309 Sum_probs=33.4
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCc
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLST 299 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~ 299 (987)
++.++++|| ...+++.....+.+.+.+......+|++|++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 567999999 7788888888888888776555567777776654
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.00048 Score=76.97 Aligned_cols=57 Identities=23% Similarity=0.202 Sum_probs=35.8
Q ss_pred CccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC
Q 001980 97 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD 162 (987)
Q Consensus 97 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~ 162 (987)
.+.+.++|++..|.. ..++++++|+| +|+|++|+|||||++.|.|...+..|.+..+
T Consensus 15 ~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~ 71 (361)
T 2qag_A 15 PGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGA 71 (361)
T ss_dssp ------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC---------
T ss_pred CceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCC
Confidence 345888888888853 34788999876 9999999999999999998766655554433
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0029 Score=63.00 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0015 Score=67.79 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=32.9
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcc
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~ 300 (987)
.++.++++||.-. +|+.....+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4578999999765 78777777777776544456788888876544
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0014 Score=66.58 Aligned_cols=32 Identities=34% Similarity=0.480 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 001980 128 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163 (987)
Q Consensus 128 G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g 163 (987)
..+++|+|++||||||+.+.|.+.+ |...+++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence 5689999999999999999998865 4445544
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0075 Score=69.60 Aligned_cols=56 Identities=13% Similarity=0.107 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCC
Q 001980 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS 298 (987)
Q Consensus 241 gGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~ 298 (987)
+.|++-...++..+.+++++|+......-......++.+.+++ .++.+|+|.+..+
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D 142 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLD 142 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC-
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECcc
Confidence 3588888889999999998887655443233334456555543 3678888877655
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0026 Score=64.66 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++|+|++||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.015 Score=64.56 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=24.3
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhcc
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl 796 (987)
-+++|+.+.|.|++|+|||||+..+..-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4789999999999999999998766543
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0035 Score=62.46 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCC
Q 001980 775 SQALVGASGSGKSSVIALIERFYDP 799 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~p 799 (987)
||+|+|++|+|||||++.+.+...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 7999999999999999999987543
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.012 Score=65.79 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
..+..+.|.||+|+|||||++.+.....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999987663
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.024 Score=59.73 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 128 GKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 128 G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
..-+.|.||+|+|||||++.++..+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4457899999999999999998754
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0037 Score=62.23 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYDPN 155 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~~~ 155 (987)
.++|+|++|+|||||++.+.|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 58999999999999999999975443
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.004 Score=63.17 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
+|+|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.043 Score=57.73 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccC
Q 001980 773 GQSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
..-+.|.|++|+||||+++++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3458899999999999999998754
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.023 Score=65.18 Aligned_cols=127 Identities=13% Similarity=0.090 Sum_probs=73.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHH
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENI 196 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni 196 (987)
.|+.+.--+++|+++.|.|++|+|||||+.-++.......| ..+.|+.=+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g------------------~~vl~~slE------------ 238 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG------------------VGVGIYSLE------------ 238 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC------------------CCEEEEESS------------
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC------------------CeEEEEECC------------
Confidence 46666645899999999999999999999888765432212 134443322
Q ss_pred hcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHH
Q 001980 197 LYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 276 (987)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~ 276 (987)
.+.+++...... ... |.+..--.. ..|+..+++|+.-|...+.+.++++.|+|... .. .
T Consensus 239 ------~~~~~l~~R~~~-----~~~----~i~~~~l~~-g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s--~~---~ 297 (444)
T 2q6t_A 239 ------MPAAQLTLRMMC-----SEA----RIDMNRVRL-GQLTDRDFSRLVDVASRLSEAPIYIDDTPDLT--LM---E 297 (444)
T ss_dssp ------SCHHHHHHHHHH-----HHT----TCCTTTCCG-GGCCHHHHHHHHHHHHHHHTSCEEEECCTTCB--HH---H
T ss_pred ------CCHHHHHHHHHH-----HHc----CCCHHHHhC-CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCC--HH---H
Confidence 122222221100 011 222110011 26999999999988888888899999887433 32 2
Q ss_pred HHHHHHhhh--CCCeEEEEc
Q 001980 277 VQEALDRLM--VGRTTVVVA 294 (987)
Q Consensus 277 i~~~l~~~~--~~~tvi~vt 294 (987)
+...++++. .+..+|+|-
T Consensus 298 l~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 298 VRARARRLVSQNQVGLIIID 317 (444)
T ss_dssp HHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEc
Confidence 333333332 255566664
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0047 Score=69.28 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
..+..+.|.||+|+||||+++.+.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566799999999999999999988663
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0063 Score=67.30 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc-----------cCCCCCceEEECC
Q 001980 773 GQSQALVGASGSGKSSVIALIER-----------FYDPTAGKVMIDG 808 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~r-----------l~~p~~G~I~idG 808 (987)
|-+++|||++|+|||||++.|.+ -.+|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 4568888888876
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0033 Score=66.41 Aligned_cols=40 Identities=20% Similarity=0.356 Sum_probs=31.8
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeC
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI 166 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~ 166 (987)
.+++.++.|+|++||||||+.+.|...+. .|.+.+++-.+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 35677899999999999999999998774 25677776433
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0067 Score=60.44 Aligned_cols=35 Identities=29% Similarity=0.528 Sum_probs=26.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc-c----CCCCCc----eEEECCc
Q 001980 775 SQALVGASGSGKSSVIALIER-F----YDPTAG----KVMIDGK 809 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r-l----~~p~~G----~I~idG~ 809 (987)
+|+|+|++|+|||||++.+.+ - +.|+.| .+.++|.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 699999999999999975554 3 566666 5666664
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.033 Score=61.91 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccC
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
+...+.|+|++|+|||||++++.+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 34568999999999999999998764
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.027 Score=62.67 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.+..-+.|.||+|+|||||++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998865
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.018 Score=62.06 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=25.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
-+++|..+.|.||.|+|||||+..++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5788999999999999999999988753
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0057 Score=62.19 Aligned_cols=30 Identities=33% Similarity=0.568 Sum_probs=23.8
Q ss_pred eeeeEEEeCCcEEEEEcCCCCChHHHHHHHh
Q 001980 764 KDFNLRIRAGQSQALVGASGSGKSSVIALIE 794 (987)
Q Consensus 764 ~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~ 794 (987)
++.++.+.+| ..+|+|+|||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3455555554 88999999999999999875
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.031 Score=56.69 Aligned_cols=44 Identities=27% Similarity=0.388 Sum_probs=31.3
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchh
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLST 944 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~t 944 (987)
.++.+|++||+- .++......+.+.+.+...+..+|+++.+...
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChhh
Confidence 367899999974 46677777777777765455667777776653
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0045 Score=61.72 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998543
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0015 Score=71.55 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=33.1
Q ss_pred ceeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHcCCC
Q 001980 117 IFRDFSIFFPAGKT--VAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 117 ~l~~i~l~i~~G~~--~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
+++.+++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 67788888899998 99999999999999999998653
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.073 Score=58.16 Aligned_cols=117 Identities=18% Similarity=0.219 Sum_probs=0.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCH
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATM 205 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 205 (987)
.+..-+.|.||+|+|||+|++.++... ....-+.+++.++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~-~~~~~~~i~~~~l~-------------------------------------- 83 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA-NNSTFFSISSSDLV-------------------------------------- 83 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT-TSCEEEEEECCSSC--------------------------------------
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc-CCCcEEEEEhHHHH--------------------------------------
Q ss_pred HHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC-------CCCCChHHHHHHH
Q 001980 206 AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA-------TSALDAGSESIVQ 278 (987)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEp-------ts~LD~~~~~~i~ 278 (987)
...+|+ ..+.-|-.+.+|-..+|.|+++||. ..+........+.
T Consensus 84 -----------------------~~~~g~------~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~ 134 (322)
T 1xwi_A 84 -----------------------SKWLGE------SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKT 134 (322)
T ss_dssp -----------------------CSSCCS------CHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHH
T ss_pred -----------------------hhhhhH------HHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHH
Q ss_pred HHHHhh------hCCCeEEEEcCCCCcc-----ccCCEEEEEe
Q 001980 279 EALDRL------MVGRTTVVVAHRLSTI-----RNVDTVAVIQ 310 (987)
Q Consensus 279 ~~l~~~------~~~~tvi~vtH~~~~~-----~~~d~i~~l~ 310 (987)
+.+..+ ..+..+|.+|+++..+ +++|+++.+.
T Consensus 135 ~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~ 177 (322)
T 1xwi_A 135 EFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIP 177 (322)
T ss_dssp HHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECC
T ss_pred HHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeC
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0061 Score=65.80 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=34.4
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhc----cCCCCCceEEECC
Q 001980 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIER----FYDPTAGKVMIDG 808 (987)
Q Consensus 762 vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~r----l~~p~~G~I~idG 808 (987)
++++..+.+ .|.-++|+|+||+||||++..|.+ +..-+...|...+
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 567777777 788999999999999999998887 4433334444433
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.012 Score=60.52 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=33.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecC-----------chhhhccCEEEEE
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHR-----------LSTIRGVDCIGVV 954 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHR-----------l~ti~~~D~Iivl 954 (987)
+++++++||+-- ++.+.-..+ +.+.. .+.+||++-|+ .+.+.-||+|.-|
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el 149 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKL 149 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEEC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeec
Confidence 589999999974 665432233 23333 38899999993 2234567998875
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0058 Score=60.39 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCC
Q 001980 128 GKTVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 128 G~~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
|.++.|+|++||||||+.+.|...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999998664
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.014 Score=63.10 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=25.1
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 001980 768 LRIRAGQSQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 768 l~I~~Ge~vaIVG~sGsGKSTL~~lL~r 795 (987)
--+++|..+.|.||.|+|||||+..+..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999988864
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.013 Score=65.27 Aligned_cols=41 Identities=24% Similarity=0.451 Sum_probs=31.8
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccC
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI 811 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di 811 (987)
.+|..+-|.||+|+||||+++.+.+.......-+.+++..+
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 108 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhh
Confidence 45678999999999999999999988764444556655443
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0056 Score=61.00 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccC
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 987 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-102 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-102 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 6e-96 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 6e-93 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-91 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-86 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-87 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-85 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-85 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-82 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 9e-74 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 6e-69 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 6e-51 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 6e-49 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 6e-45 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 7e-42 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-43 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-41 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-43 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-41 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-43 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 5e-42 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-37 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 9e-36 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-37 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-35 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-36 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-35 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 6e-35 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-34 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 8e-35 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-34 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 8e-35 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-34 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-34 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-31 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-32 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 8e-32 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-32 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 9e-31 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-23 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 5e-22 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 1e-11 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 1e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-10 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-10 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 1e-09 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 1e-07 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 1e-06 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 319 bits (818), Expect = e-102
Identities = 137/256 (53%), Positives = 175/256 (68%), Gaps = 1/256 (0%)
Query: 84 IQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKST 143
I++ + ++ G I+ +V+F Y + I +D ++ G+TVA VG SG GKST
Sbjct: 1 IKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKST 59
Query: 144 VVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEA 203
+++LI RFYD +G +L+D +IK LR+QIGLV Q+ LF+ T+ ENIL G+P A
Sbjct: 60 LINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA 119
Query: 204 TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLD 263
T EV AA ANAH FI LP GY T+VGERGV+LSGGQKQR++IAR L NP IL+LD
Sbjct: 120 TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILD 179
Query: 264 EATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 323
EATSALD SESI+QEALD L RTT++VAHRLSTI + D + VI+ G +VETGTH EL
Sbjct: 180 EATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHREL 239
Query: 324 IAKAGAYASLIRFQEM 339
IAK GAY L Q +
Sbjct: 240 IAKQGAYEHLYSIQNL 255
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 316 bits (812), Expect = e-102
Identities = 132/254 (51%), Positives = 179/254 (70%), Gaps = 2/254 (0%)
Query: 731 DDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVI 790
+ A+P+E +G I++ HV F Y + + KD NL I G++ A VG SG GKS++I
Sbjct: 3 NGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLI 61
Query: 791 ALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATE 850
LI RFYD T+G+++IDG +I+ SLR +IGLVQQ+ LF+ ++ +NI G+ AT+
Sbjct: 62 NLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD 121
Query: 851 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 910
EVVEAA+ AN H F+ LP Y T VGERGV+LSGGQKQR++IAR L NP IL+LDEA
Sbjct: 122 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEA 181
Query: 911 TSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 970
TSALD ESE ++QEAL+ L + RTT++VAHRLSTI D I V+++G IVE G+H EL++
Sbjct: 182 TSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 241
Query: 971 RPDGAYSRLLQLQH 984
+ GAY L +Q+
Sbjct: 242 K-QGAYEHLYSIQN 254
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 301 bits (772), Expect = 6e-96
Identities = 128/251 (50%), Positives = 170/251 (67%), Gaps = 2/251 (0%)
Query: 88 TNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSL 147
R +D G++EF+NVTF+YP R +V R+ ++ PAGKTVA+VG SGSGKST+ SL
Sbjct: 2 EGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASL 60
Query: 148 IERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEA-TMA 206
I RFYD + GH+L+D D++ L LR+Q+ LV+Q LF T+ NI Y + E +
Sbjct: 61 ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSRE 120
Query: 207 EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEAT 266
++E AA A A FI + NG T +GE GV LSGGQ+QRIAIARA+L++ IL+LDEAT
Sbjct: 121 QIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 180
Query: 267 SALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 326
SALD SE +Q ALD L RT++V+AHRLSTI D + V++ G +VE GTH EL+A+
Sbjct: 181 SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 240
Query: 327 AGAYASLIRFQ 337
G YA L + Q
Sbjct: 241 HGVYAQLHKMQ 251
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 293 bits (751), Expect = 6e-93
Identities = 121/253 (47%), Positives = 174/253 (68%), Gaps = 3/253 (1%)
Query: 732 DPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIA 791
D ++ G++E R+V F YP R +V ++ NL+I AG++ ALVG SGSGKS++ +
Sbjct: 1 DEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIAS 59
Query: 792 LIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK-EGATE 850
LI RFYD G +++DG D+R L SLR ++ LV Q LF ++ +NIAY + E +
Sbjct: 60 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR 119
Query: 851 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 910
++ EAAR A F++ + N T +GE GV LSGGQ+QRIAIARA+L++ IL+LDEA
Sbjct: 120 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 179
Query: 911 TSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 970
TSALD ESE +Q AL+ L + RT++++AHRLSTI D I VV+DG IVE+G+HSEL++
Sbjct: 180 TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 239
Query: 971 RPDGAYSRLLQLQ 983
+ G Y++L ++Q
Sbjct: 240 Q-HGVYAQLHKMQ 251
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 288 bits (738), Expect = 4e-91
Identities = 98/244 (40%), Positives = 157/244 (64%), Gaps = 3/244 (1%)
Query: 95 EVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP 154
+ G ++F++V+F+YP+RPDV++ + + G+ A+VG +GSGKSTV +L++ Y P
Sbjct: 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 66
Query: 155 NAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG-KPEATMAEVEAAAS 213
G +LLD + + R+L Q+ V QEP +F ++ ENI YG + TM E+ AAA
Sbjct: 67 TGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAV 126
Query: 214 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 273
+ AHSFI+ LP GY T+V E G QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALDA S
Sbjct: 127 KSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 186
Query: 274 ESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYA 331
+ V++ L R+ +++ LS + D + ++ G + E GTH++L+ K G Y
Sbjct: 187 QLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYW 246
Query: 332 SLIR 335
++++
Sbjct: 247 AMVQ 250
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 275 bits (704), Expect = 3e-86
Identities = 97/246 (39%), Positives = 151/246 (61%), Gaps = 4/246 (1%)
Query: 739 ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD 798
+ G ++ + V FAYP+RPDV+V + +R G+ ALVG +GSGKS+V AL++ Y
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65
Query: 799 PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-KEGATEAEVVEAA 857
PT G++++DGK + + + L ++ V QEP +F S+ +NIAYG + T E+ AA
Sbjct: 66 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAA 125
Query: 858 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 917
+ H F+S LP Y T V E G QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALDA
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 185
Query: 918 SECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGA 975
S+ +++ L R+ +L+ LS + D I ++ G I E G+H +L+ + G
Sbjct: 186 SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGC 244
Query: 976 YSRLLQ 981
Y ++Q
Sbjct: 245 YWAMVQ 250
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 277 bits (709), Expect = 4e-87
Identities = 113/240 (47%), Positives = 158/240 (65%), Gaps = 1/240 (0%)
Query: 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
+I R++ F Y V+ + NL I+ G+ +VG SGSGKS++ LI+RFY P G+
Sbjct: 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 804 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVH 863
V+IDG D+ + LR ++G+V Q+ L SI DNI+ G + +V+ AA+ A H
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 864 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 923
F+S L Y T VGE+G LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE V+
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 924 EALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
+ ++ +GRT +++AHRLST++ D I V++ G+IVEQG H EL+S P+ YS L QLQ
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 271 bits (695), Expect = 4e-85
Identities = 105/240 (43%), Positives = 157/240 (65%), Gaps = 2/240 (0%)
Query: 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
+I F+N+ F Y +I + ++ G+ + +VG SGSGKST+ LI+RFY P G
Sbjct: 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 159 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAH 218
VL+D D+ WLR Q+G+V Q+ L +I++NI P ++ +V AA A AH
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 278
FI+ L GY+T VGE+G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD SE ++
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 279 EALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK-AGAYASLIRFQ 337
+ ++ GRT +++AHRLST++N D + V+++G++VE G H+EL+++ Y+ L + Q
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 273 bits (699), Expect = 1e-85
Identities = 111/239 (46%), Positives = 157/239 (65%), Gaps = 3/239 (1%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+ ++V F+Y ++ RD S +A G SG GKST+ SL+ERFY P AG +
Sbjct: 2 LSARHVDFAYDDSEQIL--RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG-KPEATMAEVEAAASAANAH 218
+D I + L R QIG V+Q+ A+ A TI EN+ YG + + T ++ A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 278
SF+ +P+ +T+VGERGV++SGGQ+QR+AIARA L+NPKIL+LDEAT++LD+ SES+VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 279 EALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 337
+ALD LM GRTT+V+AHRLSTI + D + I++GQ+ +G H EL+A YA + Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 265 bits (678), Expect = 1e-82
Identities = 107/240 (44%), Positives = 157/240 (65%), Gaps = 4/240 (1%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+ RHVDFAY + +D + + A G SG GKS++ +L+ERFY PTAG++
Sbjct: 2 LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVE-AARAANVH 863
IDG+ I ++L++ R +IG V Q+ A+ A +I +N+ YG EG E + A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 864 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 923
FV +P+ T VGERGV++SGGQ+QR+AIARA L+NP IL+LDEAT++LD+ESE ++Q
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 924 EALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983
+AL+ LM+GRTT+++AHRLSTI D I ++ G+I G H+ELV+ Y++ + Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 242 bits (619), Expect = 9e-74
Identities = 64/289 (22%), Positives = 122/289 (42%), Gaps = 21/289 (7%)
Query: 73 LMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVA 132
E + +Q R N+ F ++ P + ++ ++ G+ +A
Sbjct: 12 WEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVG--NP---VLKNINLNIEKGEMLA 66
Query: 133 VVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTI 192
+ G +GSGK++++ LI + + G + ++ +Q + TI
Sbjct: 67 ITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTI 113
Query: 193 LENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252
ENI++G ++ A IT +T +GE GV LSGGQ+ RI++ARA
Sbjct: 114 KENIIFG-VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARA 172
Query: 253 MLKNPKILLLDEATSALDAGSES-IVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQ 311
+ K+ + LLD LD +E + + + +LM +T ++V ++ +R D + ++ Q
Sbjct: 173 VYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQ 232
Query: 312 GQVVETGTHEELIAKAGAY-ASLIRFQEMVRNRDFANPSTRRSRSTRLS 359
G GT EL + + + L+ + + + S R S
Sbjct: 233 GSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTEERRSSILTETLRRFS 281
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 229 bits (585), Expect = 6e-69
Identities = 66/255 (25%), Positives = 110/255 (43%), Gaps = 20/255 (7%)
Query: 730 PDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSV 789
+ + H+ P V K+ NL I G+ A+ G++GSGK+S+
Sbjct: 24 QQSNGDRKHSSDENNVSFSHLCLVG--NP---VLKNINLNIEKGEMLAITGSTGSGKTSL 78
Query: 790 IALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGAT 849
+ LI + + G + G+ + Q + +I +NI +G
Sbjct: 79 LMLILGELEASEGIIKHSGR-------------VSFCSQFSWIMPGTIKENIIFGVS-YD 124
Query: 850 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 909
E +A + ++ T +GE GV LSGGQ+ RI++ARAV K+ + LLD
Sbjct: 125 EYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDS 184
Query: 910 ATSALDAES-ECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSEL 968
LD + E V + + +LM +T +LV ++ +R D I ++ G G+ SEL
Sbjct: 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 244
Query: 969 VSRPDGAYSRLLQLQ 983
S S+L+
Sbjct: 245 QSLRPDFSSKLMGYD 259
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 176 bits (449), Expect = 6e-51
Identities = 69/229 (30%), Positives = 115/229 (50%), Gaps = 13/229 (5%)
Query: 745 IELRHVDFAYPSR-PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
I+L++V Y + K+ NL I+ G+ +++G SGSGKS+++ +I PT G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 804 VMIDGKDIRRLNLKSL----RLKIGLVQQEPALFA-ASIFDNIAYGKE--GATEAEVVEA 856
V ID L+ L R KIG V Q+ L + +N+ E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 857 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 916
+ A ++ L + + QLSGGQ+QR+AIARA+ NP I+L D+ T ALD+
Sbjct: 122 RKRALECLKMAELEERFAN---HKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178
Query: 917 ESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQG 963
++ + + L++L G+T V+V H ++ R + I ++DG + +
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 171 bits (434), Expect = 6e-49
Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 13/230 (5%)
Query: 100 IEFKNVTFSYPSRPDVI-IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
I+ KNVT +Y ++I ++ ++ G+ V+++G SGSGKST++++I P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 159 VLLDNVDIKTL----QLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEV--EAA 211
V +DN+ L + RD+IG V Q+ L T LEN+ + E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 212 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271
A + L ++ + QLSGGQ+QR+AIARA+ NP I+L D+ T ALD+
Sbjct: 122 RKRALECLKMAELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178
Query: 272 GSESIVQEALDRL--MVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT 319
+ + + L +L G+T VVV H ++ R + + ++ G+V
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 159 bits (405), Expect = 6e-45
Identities = 62/243 (25%), Positives = 117/243 (48%), Gaps = 18/243 (7%)
Query: 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
E++L ++ + + NL I+ G+ L+G SG GK++ + +I +PT G+
Sbjct: 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62
Query: 804 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYGKE--GATEAEVVEAARAA 860
+ +D+ L I +V Q A++ ++++NIA+ + + E+ R
Sbjct: 63 IYFGDRDVTYLP--PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEI--DKRVR 118
Query: 861 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 920
+ + QLSGGQ+QR+A+ARA++ P +LL+DE S LDA+
Sbjct: 119 WAAELLQ-IEELLNRYPA----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRV 173
Query: 921 VLQEALERL--MRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYS 977
++ +++L TT+ V H + D I V+ G++++ GS +E+ RP+ +
Sbjct: 174 AMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 233
Query: 978 RLL 980
Sbjct: 234 ATF 236
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 151 bits (383), Expect = 7e-42
Identities = 57/231 (24%), Positives = 107/231 (46%), Gaps = 14/231 (6%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
++ +N+T + + ++ G+ + ++G SG GK+T + +I +P G +
Sbjct: 7 VKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAH 218
+ D+ L I +V Q A++ T+ ENI + + E A
Sbjct: 64 YFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121
Query: 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 278
+ + QLSGGQ+QR+A+ARA++ P +LL+DE S LDA ++
Sbjct: 122 ELL-----QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMR 176
Query: 279 EALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 326
+ +L + TT+ V H + D +AV+ +GQ+++ G+ E+ +
Sbjct: 177 AEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 155 bits (394), Expect = 2e-43
Identities = 74/248 (29%), Positives = 128/248 (51%), Gaps = 25/248 (10%)
Query: 745 IELRHVDFAYPSRPDVV-VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
I+L ++ + + + +L + AGQ ++GASG+GKS++I + PT G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 804 VMIDGKDIRRLNLK---SLRLKIGLVQQEPALFA-ASIFDNIAYG------KEGATEAEV 853
V++DG+++ L+ R +IG++ Q L + ++F N+A + + V
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 854 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 913
E + + P+ LSGGQKQR+AIARA+ NP +LL DEATSA
Sbjct: 122 TELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 914 LDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVS 970
LD + + E L+ + R G T +L+ H + ++ + DC+ V+ +G ++EQ + SE+ S
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 971 RPDGAYSR 978
P ++
Sbjct: 231 HPKTPLAQ 238
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 150 bits (380), Expect = 2e-41
Identities = 75/235 (31%), Positives = 118/235 (50%), Gaps = 13/235 (5%)
Query: 100 IEFKNVTFSYPSRPDVI-IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 158
I+ N+T + I + S+ PAG+ V+G SG+GKST++ + P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 159 VLLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASA 214
VL+D ++ TL +L R QIG++ Q L ++ T+ N+ + E
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 215 ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274
S + G + LSGGQKQR+AIARA+ NPK+LL DEATSALD +
Sbjct: 122 TELLSLV-----GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176
Query: 275 SIVQEALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 326
+ E L + +G T +++ H + ++ + D VAVI G+++E T E+ +
Sbjct: 177 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 155 bits (394), Expect = 3e-43
Identities = 69/266 (25%), Positives = 121/266 (45%), Gaps = 34/266 (12%)
Query: 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
++ + + Y V K +L+ RAG +++G+SGSGKS+ + I P+ G
Sbjct: 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58
Query: 804 VMIDGKDIRRLN-------------LKSLRLKIGLVQQEPALFA-ASIFDNIAYG---KE 846
++++G++I + L+ LR ++ +V Q L++ ++ +N+
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 118
Query: 847 GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILL 906
G ++ + E RA V A LSGGQ+QR++IARA+ P +LL
Sbjct: 119 GLSKHDARE--RALKYLAKVGIDERAQGKYPV----HLSGGQQQRVSIARALAMEPDVLL 172
Query: 907 LDEATSALDA-ESECVLQEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGS 964
DE TSALD VL+ + G+T V+V H + R V + + G+I E+G
Sbjct: 173 FDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 232
Query: 965 HSELVSRPDGAYSRLL------QLQH 984
++ P + +L+H
Sbjct: 233 PEQVFGNPQSPRLQQFLKGSLKKLEH 258
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 149 bits (379), Expect = 3e-41
Identities = 67/251 (26%), Positives = 112/251 (44%), Gaps = 38/251 (15%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+ ++ Y + + S+ AG ++++G SGSGKST + I P+ G +
Sbjct: 3 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 160 LLDNVDIKTL-------------QLRWLRDQIGLVNQEPALFAT-TILENILYG------ 199
+++ +I + QLR LR ++ +V Q L++ T+LEN++
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 200 --KPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 257
K +A ++ A P LSGGQ+QR++IARA+ P
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPV-----------HLSGGQQQRVSIARALAMEP 168
Query: 258 KILLLDEATSALDAG-SESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVV 315
+LL DE TSALD +++ G+T VVV H + R+V V + QG++
Sbjct: 169 DVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228
Query: 316 ETGTHEELIAK 326
E G E++
Sbjct: 229 EEGDPEQVFGN 239
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 154 bits (391), Expect = 4e-43
Identities = 55/239 (23%), Positives = 105/239 (43%), Gaps = 28/239 (11%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
++L+ V + + +RAG+ LVG +G+GKS+++A + G +
Sbjct: 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPAL-FAASIFDNIAYGKEGATEAEVVEAARAANVH 863
G+ + + L L + Q+ FA ++ + + T E++ A
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA--- 112
Query: 864 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK-------NPAILLLDEATSALDA 916
A +G QLSGG+ QR+ +A VL+ +LLLDE ++LD
Sbjct: 113 -------LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 917 ESECVLQEALERLM-RGRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPD 973
+ L + L L +G V+ +H L+ T+R +++ G+++ G E+++ P+
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 224
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 151 bits (383), Expect = 5e-42
Identities = 51/237 (21%), Positives = 104/237 (43%), Gaps = 28/237 (11%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
++ ++V S S AG+ + +VG +G+GKST+++ + G +
Sbjct: 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPAL-FATTILENILYGKPEATMAEVEAAASAANAH 218
++ L ++Q+ FAT + + + + T E+ + A
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA--- 112
Query: 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK-------NPKILLLDEATSALDA 271
++G QLSGG+ QR+ +A +L+ ++LLLDE ++LD
Sbjct: 113 -------LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 272 GSESIVQEALDRLMV-GRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELIAK 326
+S + + L L G V+ +H L+ T+R+ +++ G+++ +G EE++
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 139 bits (351), Expect = 1e-37
Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 16/242 (6%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+ L V + +V ++ +L ++ G+ L+G SG GK++ + +I +P+ G++
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 805 MIDGKDIRRLNLKSLR----LKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARA 859
I K + I +V Q AL+ +++DNIA+ + R
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 860 ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 919
V + + P +LSGGQ+QR+A+ RA+++ P + L+DE S LDA+
Sbjct: 121 REVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175
Query: 920 CVLQEALERL--MRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAY 976
++ L++L G TT+ V H + D I V+ G + + GS E+ +P +
Sbjct: 176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235
Query: 977 SR 978
Sbjct: 236 VA 237
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 133 bits (336), Expect = 9e-36
Identities = 58/236 (24%), Positives = 112/236 (47%), Gaps = 18/236 (7%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+ +V + +V R+ S+ G+ + ++G SG GK+T + +I +P+ G +
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 160 LLDNVDIKTLQ----LRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASA 214
+ + + + + I +V Q AL+ T+ +NI + + E
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 215 ANAHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 273
+ L T++ R +LSGGQ+QR+A+ RA+++ P++ L+DE S LDA
Sbjct: 121 REVAELLGL------TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL 174
Query: 274 ESIVQEALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 326
++ L +L +G TT+ V H + D +AV+ +G + + G+ +E+ K
Sbjct: 175 RVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 138 bits (348), Expect = 2e-37
Identities = 72/238 (30%), Positives = 114/238 (47%), Gaps = 14/238 (5%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
++L++V A+ +VVV KD NL I G+ VG SG GKS+++ +I T+G +
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVH 863
I K + + +G+V Q AL+ S+ +N+++G + A + V R V
Sbjct: 58 FIGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 864 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 923
+ L + LSGGQ+QR+AI R ++ P++ LLDE S LDA ++
Sbjct: 116 EVLQ-LAHLLDRKPK----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 170
Query: 924 EALERL--MRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYSR 978
+ RL GRT + V H + D I V+ GR+ + G EL P +
Sbjct: 171 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 228
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 133 bits (335), Expect = 1e-35
Identities = 60/231 (25%), Positives = 106/231 (45%), Gaps = 14/231 (6%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
++ +NVT ++ +V++ +D ++ G+ V VG SG GKST++ +I +G +
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALF-ATTILENILYGKPEATMAEVEAAASAANAH 218
+ + +G+V Q AL+ ++ EN+ +G A +
Sbjct: 58 FIGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 278
+ L + + + LSGGQ+QR+AI R ++ P + LLDE S LDA ++
Sbjct: 116 EVLQL-----AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 170
Query: 279 EALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 326
+ RL +GRT + V H + D + V+ G+V + G EL
Sbjct: 171 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 135 bits (340), Expect = 4e-36
Identities = 55/247 (22%), Positives = 105/247 (42%), Gaps = 29/247 (11%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+ ++ + + ++ + G ++G +GSGKS++I +I F G+V
Sbjct: 5 LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 805 MIDGKDIRRLNLKSL-RLKIGLVQQEPALFAA-SIFDNIAYG---------------KEG 847
+ KDI L I Q P ++ +N+ G K
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 848 ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLL 907
E E+VE +A + F+ L + Y G +LSGGQ + + I RA++ NP ++++
Sbjct: 122 PKEEEMVE--KAFKILEFLK-LSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVM 174
Query: 908 DEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSH 965
DE + + + + L +G T +++ HRL + D + V+ +G+I+ +G
Sbjct: 175 DEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 234
Query: 966 SELVSRP 972
E +
Sbjct: 235 EEEIKNV 241
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 133 bits (335), Expect = 2e-35
Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 15/239 (6%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+ +N+ + + SI G ++G +GSGKST++++I F + G V
Sbjct: 5 LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 160 LLDNVDIKTLQLRWL-RDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEA------- 210
+N DI + L I Q P T+LEN+L G+ + + +
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 211 -AASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 269
+F L S + +LSGGQ + + I RA++ NPK++++DE + +
Sbjct: 122 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 270 DAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 326
G + + L G T +++ HRL + N D + V+ GQ++ G EE I
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 131 bits (330), Expect = 6e-35
Identities = 59/247 (23%), Positives = 113/247 (45%), Gaps = 12/247 (4%)
Query: 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 157
G + K++ + I + S G+ ++G +G+GK+T + +I P++G
Sbjct: 1 GAVVVKDLRKRIGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 158 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAAN 216
V + ++ + +R I + +E + +E + + + E
Sbjct: 58 IVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116
Query: 217 AHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 276
A L ++ +R S G +++ IARA++ NP++ +LDE TS LD +
Sbjct: 117 ATEIAGLGE-----KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 171
Query: 277 VQEALDRLM-VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAKAGAYASLI 334
V++ L + G T +V +H + + + D +A+I G +VETGT EEL + A
Sbjct: 172 VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEE 231
Query: 335 RFQEMVR 341
F+E+V+
Sbjct: 232 VFEEVVK 238
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 129 bits (325), Expect = 3e-34
Identities = 50/237 (21%), Positives = 101/237 (42%), Gaps = 12/237 (5%)
Query: 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 802
G + ++ + + K + I G+ L+G +G+GK++ + +I P++G
Sbjct: 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 803 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAAN 861
V + GK++ +R I + +E + + + + +
Sbjct: 58 IVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116
Query: 862 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 921
L K V S G +++ IARA++ NP + +LDE TS LD +
Sbjct: 117 ATEIA-GLGEKIKDRVS----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 171
Query: 922 LQEALERLMR-GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAY 976
+++ L++ + G T ++ +H + + + D I ++ +G IVE G+ EL R
Sbjct: 172 VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN 228
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 131 bits (330), Expect = 8e-35
Identities = 57/230 (24%), Positives = 100/230 (43%), Gaps = 12/230 (5%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E +++ Y + + + P G+ V ++G +G+GK+T +S I G +
Sbjct: 7 LEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 160 LLDNVDIKTL-QLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANA 217
+ + DI R I LV + +F T+ EN++ G E
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW-- 121
Query: 218 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 277
I L ++ + G LSGG++Q +AI RA++ PK+L++DE + L S V
Sbjct: 122 ---IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 278 QEALDRLM-VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIA 325
E + ++ G T ++V V V++ GQ+V G EL+
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 130 bits (329), Expect = 1e-34
Identities = 56/233 (24%), Positives = 108/233 (46%), Gaps = 12/233 (5%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+E++ + Y + K +L++ GQ L+GA+G+GK++ ++ I GK+
Sbjct: 7 LEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 805 MIDGKDIRRLNLKSLRLK-IGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANV 862
+ +G+DI + I LV + +F ++++N+ G + E ++ +
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKR-DLEWI 122
Query: 863 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 922
L K G LSGG++Q +AI RA++ P +L++DE + L +
Sbjct: 123 FSLFPRLKERLKQLGG----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 923 QEALERLMR-GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPD 973
E ++++ + G T +LV V V++ G+IV +G SEL+
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEM 231
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 129 bits (326), Expect = 8e-35
Identities = 39/202 (19%), Positives = 90/202 (44%), Gaps = 26/202 (12%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
+E+R + Y D V + + I G G +G GK++++ I + P G++
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYGKE----GATEAEVVEAARA 859
+ +G I ++ + KI + +E + S+ D + + E+++A +
Sbjct: 59 IYNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 860 ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 919
V ++ +LS G +R+ +A +L N I +LD+ A+D +S+
Sbjct: 114 VEVLDL------------KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 920 CVLQEALERLMRGRTTVLVAHR 941
+ +++ +++ + V+++ R
Sbjct: 162 HKVLKSILEILKEKGIVIISSR 183
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 129 bits (325), Expect = 1e-34
Identities = 36/217 (16%), Positives = 89/217 (41%), Gaps = 27/217 (12%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
+E ++++ Y D + ++ G V G +G GK+T++ I + P G +
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG----KPEATMAEVEAAASA 214
+ + V I ++ +I + +E + ++ + + + E+ A +
Sbjct: 59 IYNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 215 ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 274
++ +LS G +R+ +A +L N +I +LD+ A+D S+
Sbjct: 114 VEVLDL------------KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 275 SIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQ 311
V +++ ++ + V+++ R + D + +
Sbjct: 162 HKVLKSILEILKEKGIVIISSR-EELSYCDVNENLHK 197
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 128 bits (323), Expect = 6e-34
Identities = 64/242 (26%), Positives = 117/242 (48%), Gaps = 13/242 (5%)
Query: 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803
I +++V + + VV + N+ I G+ ++G SG+GK++ + +I P+ G+
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 804 VMIDGKDIRRLNLKSLRL---KIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARA 859
+ D + + + KIG+V Q AL+ + F+NIA+ ++ R
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 860 ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 919
V + P +LSG Q+QR+A+ARA++K+P++LLLDE S LDA
Sbjct: 122 EEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 920 CVLQEALERL--MRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAY 976
+ ++ + G T ++V+H + I + D +GV+ G++V+ G +L P
Sbjct: 177 DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQ 236
Query: 977 SR 978
Sbjct: 237 VA 238
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 121 bits (304), Expect = 2e-31
Identities = 64/234 (27%), Positives = 112/234 (47%), Gaps = 13/234 (5%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
I KNV+ + + V+ + +I G+ ++G SG+GK+T + +I P+ G +
Sbjct: 4 IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 160 LLDNVDIKTLQLRWLRD---QIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAA 215
D+ + + + +IG+V Q AL+ T ENI + M++ E
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 216 NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 275
+ +LSG Q+QR+A+ARA++K+P +LLLDE S LDA
Sbjct: 123 EV-----AKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177
Query: 276 IVQEALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 326
+ + + +G T +VV+H + I + D V V+ +G++V+ G E+L
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 124 bits (313), Expect = 1e-32
Identities = 73/225 (32%), Positives = 109/225 (48%), Gaps = 16/225 (7%)
Query: 763 FKDFNLRI---RAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 819
+F L + L+G +G+GKS + LI P G+V ++G DI L
Sbjct: 11 LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPE 68
Query: 820 RLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVG 878
R IG V Q+ ALF S++ NIAYG E R ++ L +
Sbjct: 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRK----- 123
Query: 879 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL--MRGRTTV 936
+LSGG++QR+A+ARA++ P +LLLDE SA+D +++ VL E L + +
Sbjct: 124 --PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL 181
Query: 937 LVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 980
V H L + D + V+ +GRIVE+G EL S +G + L
Sbjct: 182 HVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 122 bits (307), Expect = 8e-32
Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 16/220 (7%)
Query: 118 FRDFSI---FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL 174
+F + F ++G +G+GKS + LI P+ G V L+ DI L
Sbjct: 11 LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPE 68
Query: 175 RDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVG 233
R IG V Q+ ALF ++ NI YG E + G + +
Sbjct: 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREM-------AEKLGIAHLLD 121
Query: 234 ERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL--MVGRTTV 291
+ +LSGG++QR+A+ARA++ P++LLLDE SA+D ++ ++ E L + +
Sbjct: 122 RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL 181
Query: 292 VVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAKAGAY 330
V H L + D VAV+ G++VE G +EL +
Sbjct: 182 HVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGE 221
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 124 bits (312), Expect = 1e-32
Identities = 67/241 (27%), Positives = 121/241 (50%), Gaps = 24/241 (9%)
Query: 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 804
IE+ + + + + +L++ +G+ ++G +G+GK+ + LI F+ P +G++
Sbjct: 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 805 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYG---KEGATEAEVVEAARAA 860
++DGKD+ +L + I V Q +LF ++ N+ +G K+ V++ AR
Sbjct: 58 LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 861 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 920
+ + P LSGG++QR+A+ARA++ NP ILLLDE SALD ++
Sbjct: 116 KIEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
Query: 921 VLQEALERL--MRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYS 977
+E L L T + + H + R + D I VV DG++++ G E+ +P
Sbjct: 165 NAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRV 224
Query: 978 R 978
Sbjct: 225 A 225
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 119 bits (298), Expect = 9e-31
Identities = 63/231 (27%), Positives = 115/231 (49%), Gaps = 18/231 (7%)
Query: 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159
IE ++++ + + + S+ +G+ ++G +G+GK+ + LI F+ P++G +
Sbjct: 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 160 LLDNVDIKTLQLRWLRDQIGLVNQEPALF-ATTILENILYGKPEATMAEVEAAASAANAH 218
LLD D+ L + I V Q +LF + +N+ +G + + + A
Sbjct: 58 LLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 219 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 278
+ + LSGG++QR+A+ARA++ NPKILLLDE SALD ++ +
Sbjct: 116 --------KIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167
Query: 279 EALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 326
E L L T + + H + R + D +AV+ G++++ G EE+ K
Sbjct: 168 EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 96.2 bits (238), Expect = 2e-23
Identities = 22/190 (11%), Positives = 42/190 (22%), Gaps = 29/190 (15%)
Query: 131 VAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT 190
+ + G G GK+T+V I A + V + R I ++ +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 191 TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 250
L G V + + A
Sbjct: 63 FFTSKKLVGS-----------------------------YGVNVQYFEELAIPILERAYR 93
Query: 251 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQ 310
A K++++DE + V V + +
Sbjct: 94 EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153
Query: 311 QGQVVETGTH 320
++E
Sbjct: 154 GAVLIELTPE 163
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 92.0 bits (227), Expect = 5e-22
Identities = 18/189 (9%), Positives = 39/189 (20%), Gaps = 29/189 (15%)
Query: 777 ALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAAS 836
+ G G GK++++ I A + ++ I ++ +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63
Query: 837 IFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896
G G V + + A
Sbjct: 64 FTSKKLVGSYG-----------------------------VNVQYFEELAIPILERAYRE 94
Query: 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 956
A ++++DE + V V I +
Sbjct: 95 AKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPG 154
Query: 957 GRIVEQGSH 965
++E
Sbjct: 155 AVLIELTPE 163
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 64.9 bits (156), Expect = 1e-11
Identities = 38/324 (11%), Positives = 97/324 (29%), Gaps = 6/324 (1%)
Query: 410 RLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIY 469
R L+ P I ++ I +++ I+ + + + K
Sbjct: 4 RYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAI 63
Query: 470 IGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLA 529
A V+ + + + + ++ + + + N+ +
Sbjct: 64 GIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISR 123
Query: 530 TDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSL--LILGTYPLLVLANFAQQL 587
++ ++ + + ++ + V L L +P +L +
Sbjct: 124 VINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFG 183
Query: 588 SLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 647
L+ + ++A A+ E V I V +F ++ F + ++ L+ +
Sbjct: 184 RLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRW 243
Query: 648 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPE 707
F +++ G +L G T + L + + V+
Sbjct: 244 NAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTT 303
Query: 708 IIRGGESVGSVFSTLDRSTRIDPD 731
+ + S+ VF +D D D
Sbjct: 304 LTQSFASMDRVFQLIDE----DYD 323
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 6/73 (8%), Positives = 23/73 (31%)
Query: 9 CTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKA 68
+ + +V +G G + + L + ++ ++ A
Sbjct: 250 AINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFA 309
Query: 69 AGYKLMEIIKQKP 81
+ ++ ++I +
Sbjct: 310 SMDRVFQLIDEDY 322
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 58.4 bits (139), Expect = 1e-09
Identities = 50/318 (15%), Positives = 119/318 (37%), Gaps = 7/318 (2%)
Query: 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMI-EVFYYRNPASMERKTKEFV 466
F RL AP I+ I +L+ ++ ++ + F + + +
Sbjct: 4 FRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLW----MP 59
Query: 467 FIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAA 526
+ IG + + I Y S + + +RR + ++ V +FD++ + L
Sbjct: 60 LVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRI 119
Query: 527 RLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQ 586
D+ V S+ + + +++ S++ FI+ F W++S++++ P++ +A
Sbjct: 120 T--YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVS 177
Query: 587 LSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL 646
+ + + + + A + + + V F Q F + Q ++
Sbjct: 178 KRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 237
Query: 647 TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAP 706
+ I I Q + A +L+ T + VF ++ + ++
Sbjct: 238 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNA 297
Query: 707 EIIRGGESVGSVFSTLDR 724
+ RG + ++F+ LD
Sbjct: 298 QFQRGMAACQTLFAILDS 315
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 1e-07
Identities = 25/173 (14%), Positives = 50/173 (28%), Gaps = 6/173 (3%)
Query: 129 KTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALF 188
+ V + G G GK+T++ + V + R + + ++
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 189 ATTILENILYGKPEATMAEVEAAASAANAHSFIT-----LLPNGYSTQVGERGVQLSGGQ 243
+ LE + V S + G V + ++
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 244 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHR 296
+ I R L P ++L ++V+E +R V V +R
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKG-KPLALVEEIRNRKDVKVFNVTKENR 173
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 1e-06
Identities = 19/165 (11%), Positives = 44/165 (26%), Gaps = 7/165 (4%)
Query: 778 LVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASI 837
L G G GK+++I + V + R + + + + +
Sbjct: 6 LTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVG 65
Query: 838 FDNIAYGKEGATEAEVVEAARAANV-----HGFVSALPNAYKTPVGERGVQLSGGQKQRI 892
+ +E VV+ + + + V + ++ + I
Sbjct: 66 LEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFI 125
Query: 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVL 937
R L P ++L L E + + +
Sbjct: 126 QAVRQTLSTPGTIILGTIPVPKGKPLA--LVEEIRNRKDVKVFNV 168
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 987 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.94 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.93 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.77 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.76 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.7 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.65 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.4 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.26 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.19 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.18 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.08 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.99 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.79 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.73 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.43 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.23 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 97.2 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.13 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.82 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.82 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.82 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.76 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.75 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.74 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.72 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.68 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.66 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.64 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.57 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.56 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.55 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.54 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.54 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.53 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.43 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.42 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.33 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.32 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.31 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.28 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.26 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.24 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.19 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.17 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.16 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.15 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.11 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.11 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.07 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.05 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.04 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.03 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.98 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.96 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.96 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.95 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.93 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.92 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.92 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 95.88 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.83 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.82 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.81 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.78 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.76 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.74 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.72 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.71 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.66 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.64 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.57 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.53 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.52 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.52 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 95.51 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.51 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.51 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.5 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.49 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.48 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.48 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.46 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.45 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.45 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.43 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.42 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.4 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.36 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.34 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.34 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.32 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.31 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.3 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.28 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.27 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.25 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.24 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.24 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.24 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.23 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.21 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.17 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.14 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.13 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.13 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.11 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.05 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.03 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.97 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.97 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.94 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.88 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.87 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.86 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.84 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.83 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.78 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.77 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.74 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.73 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.69 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.68 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.67 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.67 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.65 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.64 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.64 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.64 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.63 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.62 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.6 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.57 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.53 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.48 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.45 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.44 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.43 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.43 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.43 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.4 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.38 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.34 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.32 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.31 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.27 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.26 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.25 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.24 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.21 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.19 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.18 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.13 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.12 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.08 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.08 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.08 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.04 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.01 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.01 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.98 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.98 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.95 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.85 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 93.84 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.83 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 93.83 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.81 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.79 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 93.7 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.68 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.66 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.61 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.61 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.58 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.57 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 93.57 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.54 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.54 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.52 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.5 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.49 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.49 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.45 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.45 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 93.41 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.41 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.41 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.4 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 93.37 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.34 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.34 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.31 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.31 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.31 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.26 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 93.23 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.17 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.16 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.13 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.1 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.04 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.04 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.03 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 93.02 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.01 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.96 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 92.94 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 92.94 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.93 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.85 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.81 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.81 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 92.8 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 92.73 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.68 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.63 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.62 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.58 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.57 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 92.57 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 92.57 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.52 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 92.51 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.5 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.49 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.47 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 92.47 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.44 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.43 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.38 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 92.35 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 92.34 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 92.33 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.33 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.32 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.32 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.25 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 92.23 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.22 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 92.21 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.14 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.12 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 92.12 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.11 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.09 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.06 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.06 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.05 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 92.01 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.0 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 91.98 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.95 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.94 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 91.94 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.92 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.87 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.87 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.87 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.85 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 91.84 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 91.82 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.82 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.81 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 91.81 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.78 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 91.78 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.77 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 91.77 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.77 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 91.75 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 91.73 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 91.7 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.63 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 91.58 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 91.57 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.56 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.54 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 91.51 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.49 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.46 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.41 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.4 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 91.39 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.39 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.38 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.38 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.38 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.33 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.32 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 91.31 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.26 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 91.25 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 91.25 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 91.17 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.17 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.13 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.12 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 91.11 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.11 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 91.1 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.1 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 91.07 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.03 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 90.9 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 90.87 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 90.86 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 90.83 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.81 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 90.8 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.77 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 90.72 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 90.71 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 90.67 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 90.66 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 90.66 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 90.63 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 90.61 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.61 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 90.58 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.54 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.52 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 90.5 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 90.49 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 90.47 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 90.45 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.44 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 90.43 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 90.41 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.39 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 90.37 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.37 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 90.35 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 90.16 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 90.14 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 89.95 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 89.92 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 89.91 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 89.89 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.88 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 89.86 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 89.85 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.79 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.78 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 89.65 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 89.59 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.56 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 89.55 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 89.48 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 89.45 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 89.43 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 89.4 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 89.28 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 89.24 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 89.01 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 88.93 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.93 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 88.92 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.84 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 88.81 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 88.8 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 88.8 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.8 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 88.79 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 88.77 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 88.71 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 88.67 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 88.65 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.64 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 88.5 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 88.47 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 88.37 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 88.21 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.05 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 88.03 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 88.01 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.99 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.98 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 87.74 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 87.71 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 87.67 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 87.52 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 87.49 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 87.26 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 87.17 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 87.16 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 87.16 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 87.07 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 86.96 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 86.62 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 86.57 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 86.5 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 86.35 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 86.08 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 85.74 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 85.68 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.32 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 85.27 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 85.05 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 84.78 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 84.66 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 84.54 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 84.36 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 84.35 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 84.33 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 84.25 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 83.88 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 83.45 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 83.44 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 83.32 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 83.27 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 82.92 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 82.85 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 82.3 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 82.29 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 82.17 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 82.07 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 82.02 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 81.89 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 81.46 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 81.37 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 81.28 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 81.27 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 81.15 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 80.72 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 80.58 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 80.57 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 80.33 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 80.29 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 80.14 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5e-71 Score=578.05 Aligned_cols=240 Identities=47% Similarity=0.771 Sum_probs=233.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
+|+|+||||+|++. .+++|+||||+|++||++||||+||||||||+++|+|+++|++|+|+|||+|+++++.+++|++|
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CeEEEEEEEEeCCC-CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceE
Confidence 48999999999754 45799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCC
Q 001980 824 GLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA 903 (987)
Q Consensus 824 ~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ 903 (987)
+||||||.+|++||+|||.++.+.+++++++++++.+++.+++..+|+|++|.++++|.+|||||||||||||||+++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhh
Q 001980 904 ILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983 (987)
Q Consensus 904 ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q 983 (987)
|||||||||+||+.+++.|++.|++..+++|+|+||||+++++.||||+||++|+|+|+|+|+||++++++.|++||+.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred hhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999988
Q ss_pred h
Q 001980 984 H 984 (987)
Q Consensus 984 ~ 984 (987)
.
T Consensus 240 ~ 240 (241)
T d2pmka1 240 S 240 (241)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3.3e-71 Score=583.55 Aligned_cols=246 Identities=53% Similarity=0.859 Sum_probs=237.3
Q ss_pred CCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCH
Q 001980 737 PVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL 816 (987)
Q Consensus 737 ~~~~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l 816 (987)
|....+|.|+|+||+|+|+++ ..+||+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.
T Consensus 9 pl~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~ 87 (255)
T d2hyda1 9 PIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLT 87 (255)
T ss_dssp CCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCH
T ss_pred CCCCCCCEEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCH
Confidence 334457899999999999765 4579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 817 KSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 817 ~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
+++|++|+||||+|.+|++||+|||.++.+..+++++++|++.+++++++..+|+||||.++++|.+|||||||||||||
T Consensus 88 ~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iAR 167 (255)
T d2hyda1 88 GSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 167 (255)
T ss_dssp HHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHH
T ss_pred HHhhheeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchH
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY 976 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f 976 (987)
||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++..||||+||++|+|+|.|+|+||+++ ++.|
T Consensus 168 al~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y 246 (255)
T d2hyda1 168 IFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAY 246 (255)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHH
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997 8999
Q ss_pred HHHHHhhh
Q 001980 977 SRLLQLQH 984 (987)
Q Consensus 977 ~~l~~~q~ 984 (987)
++||+.|+
T Consensus 247 ~~l~~~Q~ 254 (255)
T d2hyda1 247 EHLYSIQN 254 (255)
T ss_dssp HHHHTTTT
T ss_pred HHHHHHcC
Confidence 99999885
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.1e-69 Score=568.41 Aligned_cols=243 Identities=49% Similarity=0.796 Sum_probs=233.9
Q ss_pred CccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH
Q 001980 740 TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 819 (987)
Q Consensus 740 ~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l 819 (987)
...|.|+|+||+|+|+++ +.++|+||||+|++||++|||||||||||||+++|+|+++|++|+|+|||+|+++++.+++
T Consensus 9 ~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~ 87 (253)
T d3b60a1 9 RATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 87 (253)
T ss_dssp CCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHH
T ss_pred CCceEEEEEEEEEEeCCC-CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhh
Confidence 456899999999999865 4579999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccEEEccccccccccHHHHhccCCC-CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHH
Q 001980 820 RLKIGLVQQEPALFAASIFDNIAYGKE-GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 898 (987)
Q Consensus 820 R~~i~~VpQdp~lF~gTIreNL~~~~~-~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAl 898 (987)
|++|+||||+|.+|++|+++|+.++.+ ..++++++++++.+++.+++..+|+||||.++++|.+|||||||||||||||
T Consensus 88 r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal 167 (253)
T d3b60a1 88 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 167 (253)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred hheEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999999998864 5789999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHH
Q 001980 899 LKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 978 (987)
Q Consensus 899 lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~ 978 (987)
+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|+||++|+|+|+|+|+||+++ ++.|++
T Consensus 168 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~~ 246 (253)
T d3b60a1 168 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQ 246 (253)
T ss_dssp HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHH
T ss_pred hcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 899999
Q ss_pred HHHhhh
Q 001980 979 LLQLQH 984 (987)
Q Consensus 979 l~~~q~ 984 (987)
||+.|.
T Consensus 247 l~~~Q~ 252 (253)
T d3b60a1 247 LHKMQF 252 (253)
T ss_dssp HHHHTC
T ss_pred HHHHcc
Confidence 999884
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.3e-68 Score=561.54 Aligned_cols=241 Identities=40% Similarity=0.721 Sum_probs=230.8
Q ss_pred CccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH
Q 001980 740 TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 819 (987)
Q Consensus 740 ~~~g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l 819 (987)
..+|.|+|+||||+|+++++.++|+||||+|++||++|||||||||||||+++|.|+|+|++|+|+|||+|+++++.+++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred cccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHH
Confidence 45689999999999987766679999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccEEEccccccccccHHHHhccCC-CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHH
Q 001980 820 RLKIGLVQQEPALFAASIFDNIAYGK-EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 898 (987)
Q Consensus 820 R~~i~~VpQdp~lF~gTIreNL~~~~-~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAl 898 (987)
|++|+||||+|.+|++||++|+.++. +..++++++++++.+++.+++..+|+|++|.++++|.+||||||||+||||||
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeecc
Confidence 99999999999999999999999874 46788999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchH
Q 001980 899 LKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY 976 (987)
Q Consensus 899 lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f 976 (987)
+++|+|||||||||+||+.++..|++.|++..+ ++|+|+||||++++..||||+||++|+|+|+|+|+||+++ ++.|
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y 245 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHH
T ss_pred ccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHH
Confidence 999999999999999999999999999988654 7999999999999999999999999999999999999997 7999
Q ss_pred HHHHH
Q 001980 977 SRLLQ 981 (987)
Q Consensus 977 ~~l~~ 981 (987)
++||+
T Consensus 246 ~~l~~ 250 (251)
T d1jj7a_ 246 WAMVQ 250 (251)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 99986
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.6e-68 Score=559.19 Aligned_cols=237 Identities=44% Similarity=0.752 Sum_probs=228.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++||||+|++. .++|+||||+|++||++|||||||||||||+++|+|+++|++|+|+|||+|+++++.+.+|++|+
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence 7999999999753 36999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccccccHHHHhccCC-CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCC
Q 001980 825 LVQQEPALFAASIFDNIAYGK-EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA 903 (987)
Q Consensus 825 ~VpQdp~lF~gTIreNL~~~~-~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ 903 (987)
||||||.+|++||+||+.++. +..++++++++++.+++.+++..+|+|++|.++++|.+|||||||||||||||+++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999998774 5688999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHhh
Q 001980 904 ILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 983 (987)
Q Consensus 904 ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~~q 983 (987)
|||||||||+||+.+++.|++.|++..+++|+|+||||++++..||||+||++|+|+|+|+|+||+++ ++.|++|++.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~Q 238 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCC
T ss_pred EEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-ChHHHHHHHHH
Confidence 99999999999999999999999999899999999999999999999999999999999999999997 89999999987
Q ss_pred h
Q 001980 984 H 984 (987)
Q Consensus 984 ~ 984 (987)
.
T Consensus 239 ~ 239 (242)
T d1mv5a_ 239 L 239 (242)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=4.9e-64 Score=528.71 Aligned_cols=241 Identities=56% Similarity=0.846 Sum_probs=231.6
Q ss_pred CCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHh
Q 001980 96 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR 175 (987)
Q Consensus 96 ~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~ 175 (987)
.++.|+++||+|+|++. +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+++++..++|
T Consensus 13 ~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCEEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhh
Confidence 35679999999999864 35699999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 176 DQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
++|+||+|+|++|++||+|||++|.+..+++++.++++.+++++++..+|+|++|.++++|.+|||||||||+|||||++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred heeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHHH
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 335 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 335 (987)
+|+|||||||||+||+++++.+++.|.++.+++|+|+||||++.++.||+|++|++|+|++.|+|+||+++++.|++++.
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l~~ 251 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYS 251 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHT
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999998875
Q ss_pred HH
Q 001980 336 FQ 337 (987)
Q Consensus 336 ~~ 337 (987)
.|
T Consensus 252 ~Q 253 (255)
T d2hyda1 252 IQ 253 (255)
T ss_dssp TT
T ss_pred Hc
Confidence 44
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-63 Score=521.34 Aligned_cols=238 Identities=44% Similarity=0.776 Sum_probs=228.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+|+||+|+|+.. ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+..++.+++|++|
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CeEEEEEEEEeCCC-CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceE
Confidence 38999999999754 45699999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 179 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 179 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
+||||+|++|++||+|||.++.+..+.+++..+++.+++.+++..+|.|++|.++++|.+|||||||||+|||||+++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccc
Confidence 99999999999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHh-hhhHHHHHHHH
Q 001980 259 ILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK-AGAYASLIRFQ 337 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 337 (987)
|||||||||+||+.+++.+++.|+++.+++|+|+||||++.++.||||++|++|+|++.|+|+|++++ ++.|+++++.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred hhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 99999999999999999999999999889999999999999999999999999999999999999987 46888888654
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.3e-62 Score=519.25 Aligned_cols=241 Identities=52% Similarity=0.823 Sum_probs=230.3
Q ss_pred CCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHh
Q 001980 96 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR 175 (987)
Q Consensus 96 ~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~ 175 (987)
..+.|+++||+|+|+++ +.++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||+++..++..++|
T Consensus 10 ~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r 88 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 88 (253)
T ss_dssp CCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred CceEEEEEEEEEEeCCC-CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhh
Confidence 44679999999999864 45699999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEcCCCCCchhcHHHHHhcCCC-CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 176 DQIGLVNQEPALFATTILENILYGKP-EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
++|+||+|+|++|++|+++|+.++.+ ..+.+++.++++.+++.++++.+|+|++|.++++|.+|||||||||+|||||+
T Consensus 89 ~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~ 168 (253)
T d3b60a1 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 168 (253)
T ss_dssp HTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred heEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999965 45788999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHH
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLI 334 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 334 (987)
++|+|||||||||+||+.+++.+++.|+++.+++|+|+||||++.++.||+|++|++|+|+++|+|+||+++++.|++++
T Consensus 169 ~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l~ 248 (253)
T d3b60a1 169 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLH 248 (253)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHH
T ss_pred cCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHH
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999998
Q ss_pred HHH
Q 001980 335 RFQ 337 (987)
Q Consensus 335 ~~~ 337 (987)
+.|
T Consensus 249 ~~Q 251 (253)
T d3b60a1 249 KMQ 251 (253)
T ss_dssp HHT
T ss_pred HHc
Confidence 765
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.3e-62 Score=514.71 Aligned_cols=239 Identities=41% Similarity=0.745 Sum_probs=226.1
Q ss_pred CCccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHh
Q 001980 96 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR 175 (987)
Q Consensus 96 ~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~ 175 (987)
.++.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|+.+++..++|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred ccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHH
Confidence 34679999999999876666799999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEcCCCCCchhcHHHHHhcCCC-CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 176 DQIGLVNQEPALFATTILENILYGKP-EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
++|+||+|+|++|++||+||+.+|.. .....+...++..+++.+++..+|+|++|.++++|.+|||||||||+|||||+
T Consensus 88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~ 167 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167 (251)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred HHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccc
Confidence 99999999999999999999999854 45677888888889999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHH
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYAS 332 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 332 (987)
++|+|+|||||||+||+.++..+++.|.++.+ ++|+|+||||++.++.||||++|++|+|+++|+|+||+++++.|+.
T Consensus 168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~~ 247 (251)
T d1jj7a_ 168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWA 247 (251)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHH
T ss_pred cCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHH
Confidence 99999999999999999999999999998753 8999999999999999999999999999999999999999999988
Q ss_pred HH
Q 001980 333 LI 334 (987)
Q Consensus 333 ~~ 334 (987)
++
T Consensus 248 l~ 249 (251)
T d1jj7a_ 248 MV 249 (251)
T ss_dssp HH
T ss_pred Hh
Confidence 76
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=3.3e-62 Score=512.74 Aligned_cols=235 Identities=47% Similarity=0.728 Sum_probs=223.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++||+|+|++. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.+++.+++|++|+
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence 7999999999753 35899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCchhcHHHHHhcCCC-CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 180 LVNQEPALFATTILENILYGKP-EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 180 ~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
||||+|++|++||+||+.++.. ..+.++++++++.+++.+++..+|+|++|.++++|.+|||||||||+|||||+++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998843 566788889999999889999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHHHH
Q 001980 259 ILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRF 336 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 336 (987)
|||||||||+||+.++..+++.|+++.+++|+|+||||++.+..||||++|++|+|+++|+|+||+++++.|++++..
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~ 237 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE 237 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHC
T ss_pred EEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCChHHHHHHHH
Confidence 999999999999999999999999998899999999999999899999999999999999999999999999888754
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.6e-55 Score=470.58 Aligned_cols=219 Identities=30% Similarity=0.447 Sum_probs=199.3
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
+.|.|+|++|.+ .|||+||||+|++||++|||||||||||||+++|+|+++|++|+|.+|| +
T Consensus 37 ~~i~~~~~~~~g-----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 37 NNVSFSHLCLVG-----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ---CHHHHHHTT-----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CcEEEEEcCCCC-----CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------E
Confidence 467777776533 3699999999999999999999999999999999999999999999998 4
Q ss_pred cEEEccccccccccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 001980 823 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 902 (987)
Q Consensus 823 i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p 902 (987)
|+|+||+|.+|++||++||.++. ..++.+.+++++.+++.+++..+|+++++.++++|.+|||||||||||||||+++|
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p 177 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 177 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTS-CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEeccccccCceeeccccccc-cccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCc
Confidence 99999999999999999998875 46888999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHH-HHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHH
Q 001980 903 AILLLDEATSALDAESECVLQEA-LERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 981 (987)
Q Consensus 903 ~ILlLDEaTS~LD~~te~~I~~~-l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~ 981 (987)
+|||||||||+||+.++..|++. +....+++|+|+||||++.++.||||+||++|+|+++|+|+||++. ++.|++.+.
T Consensus 178 ~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~~~~~ 256 (281)
T d1r0wa_ 178 DLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFSSKLM 256 (281)
T ss_dssp SEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHHHHHH
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhcc-CcHHHHHHc
Confidence 99999999999999999998876 4445578999999999999999999999999999999999999976 567776553
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=6.8e-53 Score=433.12 Aligned_cols=216 Identities=31% Similarity=0.550 Sum_probs=193.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++|||++|.+ .+|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|++||.|+.+++.. |++||
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEeCC----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhcce
Confidence 789999999942 389999999999999999999999999999999999999999999999999988765 78999
Q ss_pred EEcccccccc-ccHHHHhccCC---CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 001980 825 LVQQEPALFA-ASIFDNIAYGK---EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 900 (987)
Q Consensus 825 ~VpQdp~lF~-gTIreNL~~~~---~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr 900 (987)
||||++.||. -||+|||.++. ....++++.++++..++.++.++.| ..||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTS
T ss_pred eeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCCh-----------hhCCHHHhcchhhhhhhhc
Confidence 9999999996 59999998653 2235678899999998877654433 4699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAYS 977 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~ 977 (987)
+|+|||||||||+||+.+...|++.|++.. .+.|+|+|||+++.+.. ||||++|++|+|++.|+|+|++++|...|-
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~v 224 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRV 224 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHH
T ss_pred cCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHH
Confidence 999999999999999999999999999864 47899999999998876 899999999999999999999998776553
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2e-52 Score=432.48 Aligned_cols=219 Identities=30% Similarity=0.520 Sum_probs=189.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++||+++|. +..||+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||+|+++++.. |++|
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceE
Confidence 599999999995 45799999999999999999999999999999999999999999999999999988864 6789
Q ss_pred EEEcccccccc-ccHHHHhccCCC--CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAYGKE--GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~~~~--~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
|||||+|.+|. .||+||+.++.. ..+.+ .+.++++.+++.++..+.| ..||||||||++|||
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSGGq~QRvaiAr 149 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVAR 149 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHH
T ss_pred EEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHh
Confidence 99999999995 699999987643 33443 4456788888876654433 469999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPD 973 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~ 973 (987)
||+.+|+|||||||||+||+.+...|++.|++.. .++|+|+|||+++.+.. ||||++|++|+|++.|+|++++++|.
T Consensus 150 aL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~ 229 (239)
T d1v43a3 150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 229 (239)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred hhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 9999999999999999999999999999999974 38999999999999866 89999999999999999999999988
Q ss_pred chHHH
Q 001980 974 GAYSR 978 (987)
Q Consensus 974 g~f~~ 978 (987)
..|.+
T Consensus 230 ~~~~~ 234 (239)
T d1v43a3 230 SVFVA 234 (239)
T ss_dssp BHHHH
T ss_pred CHHHH
Confidence 77754
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.1e-53 Score=434.51 Aligned_cols=218 Identities=33% Similarity=0.501 Sum_probs=166.7
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
|+++||+++|. +..||+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.++.+.+. .|++||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVG 75 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEE
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCch--hhceee
Confidence 78999999995 3469999999999999999999999999999999999999999999999999998775 467899
Q ss_pred EEcccccccc-ccHHHHhccCCCC--C----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 001980 825 LVQQEPALFA-ASIFDNIAYGKEG--A----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 897 (987)
Q Consensus 825 ~VpQdp~lF~-gTIreNL~~~~~~--~----sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 897 (987)
||||+|.+|. -|++||+.++... . .++.+.++++.+++.++..+.| ..||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred eeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 9999999995 5999999876421 1 2345778888888877665544 4699999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCCc
Q 001980 898 VLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDG 974 (987)
Q Consensus 898 llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~g 974 (987)
|+.+|++||||||||+||+.+...|++.|++.. .++|+|+|||+++.+.. ||||++|++|+|++.|+|+|++++|..
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 224 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 224 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCCC
Confidence 999999999999999999999999999999864 48999999999998877 899999999999999999999999887
Q ss_pred hHHH
Q 001980 975 AYSR 978 (987)
Q Consensus 975 ~f~~ 978 (987)
.|-+
T Consensus 225 ~~v~ 228 (232)
T d2awna2 225 RFVA 228 (232)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7753
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=5.8e-53 Score=436.60 Aligned_cols=223 Identities=30% Similarity=0.500 Sum_probs=197.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC---HHHHh
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSLR 820 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---l~~lR 820 (987)
.|+++||+++|+.+ +..||+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+...+ ....|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECCC-CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence 48999999999643 356999999999999999999999999999999999999999999999999998765 44568
Q ss_pred cccEEEccccccccc-cHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 821 LKIGLVQQEPALFAA-SIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 821 ~~i~~VpQdp~lF~g-TIreNL~~~~~--~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
++||||||+|.||.. ||+|||.++.. ..+. +.+.++++.+++.++....| ..||||||||+|
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----------~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHH
T ss_pred ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCCh-----------hhCCHHHHhHHH
Confidence 889999999999965 99999987633 2333 44778888888877665554 369999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
|||||+.+|+|||||||||+||+.+...|++.|++.. .+.|+|+|||+++.+.. ||||++|++|+|++.|+|+|+++
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999999874 38999999999998855 89999999999999999999999
Q ss_pred CCCchHHH
Q 001980 971 RPDGAYSR 978 (987)
Q Consensus 971 ~~~g~f~~ 978 (987)
+|...|.+
T Consensus 231 ~P~~~~~~ 238 (242)
T d1oxxk2 231 NPVSIQVA 238 (242)
T ss_dssp SCSSHHHH
T ss_pred CCCCHHHH
Confidence 98777643
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.8e-53 Score=436.08 Aligned_cols=222 Identities=33% Similarity=0.581 Sum_probs=195.1
Q ss_pred EEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH---Hh
Q 001980 745 IELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---LR 820 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~---lR 820 (987)
|+++||+++|+.+.. ..||+||||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.|+..++.+. +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 789999999975432 25899999999999999999999999999999999999999999999999999988665 57
Q ss_pred cccEEEccccccccc-cHHHHhccCC--CCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 001980 821 LKIGLVQQEPALFAA-SIFDNIAYGK--EGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 893 (987)
Q Consensus 821 ~~i~~VpQdp~lF~g-TIreNL~~~~--~~~s----d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 893 (987)
++||+|||+|.+|.. ||+||+.++. ...+ ++.+.++++.+++.++..+.| ..||||||||+|
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~-----------~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCB-----------SCCCHHHHHHHH
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence 889999999999965 9999998642 1122 356778899998876544333 469999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001980 894 IARAVLKNPAILLLDEATSALDAESECVLQEALERLM-R-GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 970 (987)
Q Consensus 894 LARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~-~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~ 970 (987)
|||||+.+|+||||||||++||+.+...|++.|++.. + |.|+|+|||+++.+.. ||||+||++|+|+|.|+|+|+++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999875 3 8999999999999876 89999999999999999999999
Q ss_pred CCCchHH
Q 001980 971 RPDGAYS 977 (987)
Q Consensus 971 ~~~g~f~ 977 (987)
+|...|.
T Consensus 231 ~P~~~~t 237 (240)
T d3dhwc1 231 HPKTPLA 237 (240)
T ss_dssp SSCCTTT
T ss_pred CCCChHH
Confidence 8876664
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.1e-52 Score=435.22 Aligned_cols=221 Identities=28% Similarity=0.484 Sum_probs=194.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHH----H
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS----L 819 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~----l 819 (987)
.|+++||+++|. +.+||+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+... .
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred cEEEEeEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccc
Confidence 489999999995 346999999999999999999999999999999999999999999999999998766544 3
Q ss_pred hcccEEEccccccccc-cHHHHhccCC--CCCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 001980 820 RLKIGLVQQEPALFAA-SIFDNIAYGK--EGATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 892 (987)
Q Consensus 820 R~~i~~VpQdp~lF~g-TIreNL~~~~--~~~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 892 (987)
|++|+||||+|.||.. ||+||+.++. ...+. +.+.++++.+++.++..+.| ..||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----------~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHHHH
T ss_pred cccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHH
Confidence 7889999999999965 9999998752 12233 34677888888877654443 46999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHh
Q 001980 893 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-R-GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 893 aLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~-~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl 969 (987)
+|||||+.+|+||||||||++||+.+...|++.|++.. + |.|+|+|||+++.+.. ||||+||++|+|++.|+|+|++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999874 2 8999999999999876 8999999999999999999999
Q ss_pred cCCCchHHH
Q 001980 970 SRPDGAYSR 978 (987)
Q Consensus 970 ~~~~g~f~~ 978 (987)
.+|...|-+
T Consensus 229 ~~P~~~~~~ 237 (240)
T d1g2912 229 DKPANTFVA 237 (240)
T ss_dssp HSCSBHHHH
T ss_pred hCCCCHHHH
Confidence 998777754
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=5.5e-52 Score=429.12 Aligned_cols=216 Identities=27% Similarity=0.444 Sum_probs=184.7
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++. +++|
T Consensus 6 ~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceE
Confidence 3899999999973 4599999999999999999999999999999999999999999999999999888764 4679
Q ss_pred EEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 179 GLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
|||||+|.+|+. ||+||+.++... .+.++..+. +.+.++.+ |+.....+.+.+||||||||++|||||+.
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~~ 153 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-----VRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 153 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHH-----HHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHhhhcc
Confidence 999999999975 999999987542 223333221 23445555 77777888899999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+|+||||||||++||+.++..+++.|+++. + |+|+|+|||+++++.. ||||++|++|+|+++|+++++.++
T Consensus 154 ~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 227 (239)
T d1v43a3 154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227 (239)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred CCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999984 3 8999999999999866 999999999999999999999765
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=4.5e-52 Score=426.98 Aligned_cols=210 Identities=31% Similarity=0.510 Sum_probs=185.4
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|+|++|++ .+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.++. +++||
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEeCC----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhcce
Confidence 789999999963 289999999999999999999999999999999999999999999999999988765 56899
Q ss_pred EEcCCCCCchh-cHHHHHhcCCC---CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc
Q 001980 180 LVNQEPALFAT-TILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 255 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~ 255 (987)
||||++.+|+. ||+||+.++.. ....+++.++++ .+ |+.......+.+||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~---------~~--~l~~~~~~~~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTAR---------DL--KIEHLLDRNPLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHH---------HT--TCTTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred eeccccccCccccHHHHHHHHHhhccccHHHHHHHHHH---------Hh--cchhhHhCChhhCCHHHhcchhhhhhhhc
Confidence 99999999976 99999998632 122334443333 33 55556677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+|++|||||||++||+.+++.+++.|+++. .|.|+|+|||+++++.. ||||++|++|+|+++|++++++++
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred cCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999974 38999999999998876 999999999999999999999764
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.7e-52 Score=448.67 Aligned_cols=217 Identities=27% Similarity=0.446 Sum_probs=195.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|++| . ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 38 ~i~~~~~~~--~---g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i 99 (281)
T d1r0wa_ 38 NVSFSHLCL--V---GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RV 99 (281)
T ss_dssp --CHHHHHH--T---TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CE
T ss_pred cEEEEEcCC--C---CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------EE
Confidence 455666554 2 23599999999999999999999999999999999999999999999998 79
Q ss_pred EEEcCCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 179 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 179 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
+|+||+|++|++||+|||.++.. ....++..+++.+.+.+++..+|+++++.++++|.+|||||||||+|||||+++|+
T Consensus 100 ~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~ 178 (281)
T d1r0wa_ 100 SFCSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 178 (281)
T ss_dssp EEECSSCCCCSEEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEeccccccCceeecccccccc-ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999864 45677888888888899999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHH-HHhhhCCCeEEEEcCCCCccccCCEEEEEeCCEEEEecChHHHHHhhhhHHHHH
Q 001980 259 ILLLDEATSALDAGSESIVQEA-LDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLI 334 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~~-l~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 334 (987)
|||||||||+||+.+++.+++. +..+.+++|+|+|||+++.++.||||++|++|+|++.|+|+|+++..+.|...+
T Consensus 179 illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~ 255 (281)
T d1r0wa_ 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKL 255 (281)
T ss_dssp EEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred chhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhccCcHHHHHH
Confidence 9999999999999999988876 444556899999999999999999999999999999999999998777776543
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-52 Score=428.90 Aligned_cols=215 Identities=28% Similarity=0.465 Sum_probs=155.9
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
|+++|++|+|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++||
T Consensus 1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 75 (232)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceee
Confidence 689999999973 4599999999999999999999999999999999999999999999999999887754 46799
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCCCC--HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccC
Q 001980 180 LVNQEPALFAT-TILENILYGKPEAT--MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 256 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~ 256 (987)
||||+|.+|+. ||+||+.++..... .++..+ .+.+.++.+ |+.......+.+||||||||++|||||+.+
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~l~~~~~~~~~~LSGGqkQRvaiAraL~~~ 148 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQ-----RVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVAE 148 (232)
T ss_dssp EECSSCCC---------------------CHHHH-----HHHHHHHHC-----------------------CHHHHHHTC
T ss_pred eeccccccccchhHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhC--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 99999998754211 111111 112333433 444455667779999999999999999999
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhh--CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|+++||||||++||+.+++.+++.|+++. .|+|+|+|||+++++.. ||||++|++|+|++.|+++|++++
T Consensus 149 P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 149 PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999999999999874 48999999999999877 899999999999999999999865
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=5e-52 Score=429.56 Aligned_cols=220 Identities=29% Similarity=0.443 Sum_probs=190.0
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC---HHHHh
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ---LRWLR 175 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~~ 175 (987)
.|+++|++++|+.. +..+|+||||+|++||+++|+||||||||||+++|.|+++|++|+|.++|+++...+ ....|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECCC-CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence 48999999999643 456899999999999999999999999999999999999999999999999997654 33456
Q ss_pred cceEEEcCCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHH
Q 001980 176 DQIGLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 252 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARa 252 (987)
++||||||+|.||+. ||+|||.++... .+.++..+. +.+.++.+ |+.......+.+||||||||++||||
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~-----v~~~l~~~--gL~~~~~~~p~~LSGGqkQRvaiARa 154 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-----VEEVAKIL--DIHHVLNHFPRELSGAQQQRVALARA 154 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHH-----HHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHH-----HHHHHhhc--ChHhhhhCChhhCCHHHHhHHHHHhH
Confidence 789999999999977 999999987542 222322221 12334444 67667788888999999999999999
Q ss_pred hccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 253 MLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 253 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
|+.+|++|||||||++||+.++..+++.|+++. + |.|+|+|||+++++.. ||||++|++|+|++.|++++++.+
T Consensus 155 L~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~ 231 (242)
T d1oxxk2 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (242)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999984 3 8999999999998865 999999999999999999999765
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.6e-52 Score=429.31 Aligned_cols=214 Identities=33% Similarity=0.470 Sum_probs=180.4
Q ss_pred EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHH----
Q 001980 100 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL---- 174 (987)
Q Consensus 100 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---- 174 (987)
|+++|++|+|+... ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++..++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 78999999997532 2347999999999999999999999999999999999999999999999999999987654
Q ss_pred hcceEEEcCCCCCchh-cHHHHHhcCC-----CCCCHHHHHHHHHHHhHHHHHHhCCCCCcc-cccCCCCCCChHHHHHH
Q 001980 175 RDQIGLVNQEPALFAT-TILENILYGK-----PEATMAEVEAAASAANAHSFITLLPNGYST-QVGERGVQLSGGQKQRI 247 (987)
Q Consensus 175 ~~~i~~v~Q~~~l~~~-tv~eni~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t-~~~~~g~~LSgGqkqRi 247 (987)
|++||||+|+|.+++. ||+||+.++. +..+.++..+. +.+.++.+ |+.. .....+.+|||||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~p~~LSGGqkQRv 154 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKR-----ALECLKMA--ELEERFANHKPNQLSGGQQQRV 154 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHH-----HHHHHHHT--TCCGGGTTCCGGGSCHHHHHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHH-----HHHHHHhh--chhhhhhcCChhhCCHHHHHHH
Confidence 3579999999999976 9999999752 12232222211 12233333 4433 34567789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCccccCCEEEEEeCCEEEEecCh
Q 001980 248 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTH 320 (987)
Q Consensus 248 alARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~ 320 (987)
+|||||+.+|++||||||||+||+.++..+++.|+++. + |+|+|+|||+++.++.||||++|++|+|+++|+.
T Consensus 155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 99999999999999999999999999999999999984 3 8999999999998888999999999999999853
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.6e-51 Score=422.81 Aligned_cols=211 Identities=32% Similarity=0.487 Sum_probs=180.3
Q ss_pred EEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHH----
Q 001980 745 IELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL---- 819 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~-~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~l---- 819 (987)
|+++||+++|+.+.. ..||+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+..++.+.+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 799999999964322 247999999999999999999999999999999999999999999999999999998775
Q ss_pred hcccEEEcccccccc-ccHHHHhccCC-----CCCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 001980 820 RLKIGLVQQEPALFA-ASIFDNIAYGK-----EGATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 889 (987)
Q Consensus 820 R~~i~~VpQdp~lF~-gTIreNL~~~~-----~~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQr 889 (987)
|++||||||+|.+|. -||+||+.++. +..+.+ ++.+.++.+++.+-. .+.. ..+||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~------~~~~----p~~LSGGqk 151 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF------ANHK----PNQLSGGQQ 151 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGG------TTCC----GGGSCHHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhh------hcCC----hhhCCHHHH
Confidence 467999999999885 59999998642 233433 344556666654321 1222 246999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 001980 890 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSH 965 (987)
Q Consensus 890 QrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~ 965 (987)
||+||||||+.+|+|||||||||+||+.+...|++.|++.. .++|+|+|||+++.++.||||++|++|+|+++|++
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 99999999999999999999999999999999999999974 37899999999999888999999999999999975
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.3e-51 Score=427.38 Aligned_cols=218 Identities=27% Similarity=0.455 Sum_probs=185.9
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH----H
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW----L 174 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~----~ 174 (987)
.|+++|++++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred cEEEEeEEEEECC---EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccc
Confidence 4899999999973 45999999999999999999999999999999999999999999999999987665432 3
Q ss_pred hcceEEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHH
Q 001980 175 RDQIGLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR 251 (987)
Q Consensus 175 ~~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialAR 251 (987)
|++||||||+|.+|+. ||+||+.++.. ..+.++..+.. .+.++.+ |+.......+.+||||||||++|||
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v-----~~~l~~~--~l~~~~~~~p~~LSGGqkQRv~IAr 152 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV-----REVAELL--GLTELLNRKPRELSGGQRQRVALGR 152 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHH-----HHHHHHH--TCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred cccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHH-----HHHHHHc--CChhHhcCChhhCCHHHHHHHHHHH
Confidence 5689999999999977 99999998632 12222222211 1222222 4555567778899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 252 AMLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 252 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
||+.+|++|||||||++||+.++..+++.|+++. + |.|+|+|||+++++.. ||||++|++|+|++.|+++|++.+
T Consensus 153 aL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~ 230 (240)
T d1g2912 153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (240)
T ss_dssp HHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999999985 3 9999999999999876 899999999999999999999865
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-51 Score=425.49 Aligned_cols=216 Identities=34% Similarity=0.527 Sum_probs=186.1
Q ss_pred EEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHH---Hh
Q 001980 100 IEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW---LR 175 (987)
Q Consensus 100 i~~~~~~~~y~~~~~-~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~~ 175 (987)
|+++|++++|+.... ..+|+||||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...+... +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 789999999975432 35899999999999999999999999999999999999999999999999999887654 55
Q ss_pred cceEEEcCCCCCchh-cHHHHHhcCCC--CCCH----HHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHH
Q 001980 176 DQIGLVNQEPALFAT-TILENILYGKP--EATM----AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIA 248 (987)
Q Consensus 176 ~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRia 248 (987)
++||||||+|.+|+. ||+|||.++.. ..+. +++.+.++.+ |+.......+.+||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~v-----------gL~~~~~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV-----------GLGDKHDSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHH-----------STTTTTSSCBSCCCHHHHHHHH
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHHH
Confidence 789999999999976 99999987521 1111 2233333332 5555567777899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-C-CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHH
Q 001980 249 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 325 (987)
Q Consensus 249 lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 325 (987)
|||||+.+|++|||||||++||+.++..+++.|+++. + |.|+|+|||+++++.. ||||++|++|+|++.|+++++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999984 3 8999999999999876 89999999999999999999865
Q ss_pred h
Q 001980 326 K 326 (987)
Q Consensus 326 ~ 326 (987)
+
T Consensus 231 ~ 231 (240)
T d3dhwc1 231 H 231 (240)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.4e-50 Score=425.31 Aligned_cols=221 Identities=29% Similarity=0.502 Sum_probs=193.3
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCC--------
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN-------- 815 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~-------- 815 (987)
.|+++||+++|. +.+||+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+...+
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEEEEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccc
Confidence 489999999995 346999999999999999999999999999999999999999999999999997543
Q ss_pred -----HHHHhcccEEEcccccccc-ccHHHHhccC---CCCCCH----HHHHHHHHHcCchhhHh-hCCCcCCCccCCCC
Q 001980 816 -----LKSLRLKIGLVQQEPALFA-ASIFDNIAYG---KEGATE----AEVVEAARAANVHGFVS-ALPNAYKTPVGERG 881 (987)
Q Consensus 816 -----l~~lR~~i~~VpQdp~lF~-gTIreNL~~~---~~~~sd----~ei~~al~~a~l~~~i~-~lp~gldt~vge~G 881 (987)
...+|++|++|||+|.+|. -|++||+.++ ....+. +.+.++++.+++.+... +.|
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p----------- 147 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP----------- 147 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------
T ss_pred ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCc-----------
Confidence 2357899999999999986 5999999754 122333 44677788888876543 223
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEE
Q 001980 882 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRI 959 (987)
Q Consensus 882 ~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~i 959 (987)
.+||||||||+||||||+.+|+||||||||++||+.+...|++.|++.. +|+|+|+|||+++.+.. ||||+||++|+|
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~i 227 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 3699999999999999999999999999999999999999999999875 57999999999999876 899999999999
Q ss_pred EEecChhHHhcCCCchHHH
Q 001980 960 VEQGSHSELVSRPDGAYSR 978 (987)
Q Consensus 960 ve~Gt~~eLl~~~~g~f~~ 978 (987)
+|.|+|+|++++|...|.+
T Consensus 228 v~~g~~~ev~~~P~~~~~~ 246 (258)
T d1b0ua_ 228 EEEGDPEQVFGNPQSPRLQ 246 (258)
T ss_dssp EEEECHHHHHHSCCSHHHH
T ss_pred EEEcCHHHHHhCCCCHHHH
Confidence 9999999999998777764
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=6.2e-49 Score=411.04 Aligned_cols=220 Identities=25% Similarity=0.418 Sum_probs=185.5
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHh-c
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR-D 176 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~ 176 (987)
..|+++|++++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+....+ .
T Consensus 5 ~~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~ 81 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred eEEEEeeEEEEECC---EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHh
Confidence 35899999999973 4599999999999999999999999999999999999999999999999999998876654 4
Q ss_pred ceEEEcCCCCCchh-cHHHHHhcCCCCC-CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 177 QIGLVNQEPALFAT-TILENILYGKPEA-TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 177 ~i~~v~Q~~~l~~~-tv~eni~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
.|+|+||++.+|+. ||+||+.++.... ..+...+..... +..++ ++.....+.+.+||||||||++|||||+
T Consensus 82 gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~l~~~~~~~~~~LSGG~~Qrv~iAraL~ 155 (240)
T d1ji0a_ 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALM 155 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH-----HHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHT
T ss_pred cccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHH-----HHHhh-ChHHHHhCchhhCCHHHHHHHHHHHHHH
Confidence 59999999999986 9999998864311 112222211111 11111 2333455667799999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|++|||||||++||+.+++.+++.|+++. +|+|+|++||+++++.. ||||++|++|+|+++|+++|+.++
T Consensus 156 ~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred hCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 9999999999999999999999999999985 58999999999998866 999999999999999999999765
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=8.8e-49 Score=409.86 Aligned_cols=215 Identities=25% Similarity=0.417 Sum_probs=182.5
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHh-cc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLR-LK 822 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR-~~ 822 (987)
-|+++|++++|. +..||+||||+|++||.+||+||||||||||+++|+|+++|++|+|++||.|+...+.+..+ ..
T Consensus 6 ~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 6 VLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEeeEEEEEC---CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence 489999999995 34699999999999999999999999999999999999999999999999999999887764 45
Q ss_pred cEEEccccccccc-cHHHHhccCCCC-CCHHH----HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 001980 823 IGLVQQEPALFAA-SIFDNIAYGKEG-ATEAE----VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 896 (987)
Q Consensus 823 i~~VpQdp~lF~g-TIreNL~~~~~~-~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 896 (987)
++++||++.+|.. |++||+.++... ...++ +.++++.. ..+.+..+..+ .+||||||||++|||
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~~----~~LSGG~~Qrv~iAr 152 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLF------PRLKERLKQLG----GTLSGGEQQMLAIGR 152 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHC------HHHHTTTTSBS----SSSCHHHHHHHHHHH
T ss_pred ccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHh------hChHHHHhCch----hhCCHHHHHHHHHHH
Confidence 9999999999975 999999765321 12222 22333222 11222333334 469999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 897 AVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 897 Allr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
||+.+|+||||||||++||+.+...|++.|+++. +|+|||+|+|+++.+.. ||||+||++|+|++.|+|+|++++
T Consensus 153 aL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 153 ALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 9999999999999999999999999999999875 58999999999998865 899999999999999999999875
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.8e-49 Score=415.36 Aligned_cols=218 Identities=31% Similarity=0.519 Sum_probs=183.6
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCC--------
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ-------- 170 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~-------- 170 (987)
.|+++|++++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEEEEEEEECC---EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccc
Confidence 3899999999974 45999999999999999999999999999999999999999999999999986542
Q ss_pred -----HHHHhcceEEEcCCCCCchh-cHHHHHhcCC---CCCCHHHHHHHHHHHhHHHHHHhCCCCCcccc-cCCCCCCC
Q 001980 171 -----LRWLRDQIGLVNQEPALFAT-TILENILYGK---PEATMAEVEAAASAANAHSFITLLPNGYSTQV-GERGVQLS 240 (987)
Q Consensus 171 -----~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~-~~~g~~LS 240 (987)
...+|++||||||+|.+|+. ||+||+.++. ......+..+.. .+.++.+ |+.... ...+.+||
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~p~~LS 151 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERA-----LKYLAKV--GIDERAQGKYPVHLS 151 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHH-----HHHHHHT--TCCHHHHTSCGGGSC
T ss_pred ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHH-----HHHHHHc--CCchhhhccCccccc
Confidence 23467789999999999976 9999998752 122222222211 2233333 444332 34467899
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEec
Q 001980 241 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 318 (987)
Q Consensus 241 gGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 318 (987)
||||||++|||||+.+|+++||||||++||+.++..+++.|+++. +|+|+|+||||++++.. ||||++|++|+|+++|
T Consensus 152 GG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g 231 (258)
T d1b0ua_ 152 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 231 (258)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999885 58999999999999876 9999999999999999
Q ss_pred ChHHHHHh
Q 001980 319 THEELIAK 326 (987)
Q Consensus 319 ~~~~l~~~ 326 (987)
+++|++.+
T Consensus 232 ~~~ev~~~ 239 (258)
T d1b0ua_ 232 DPEQVFGN 239 (258)
T ss_dssp CHHHHHHS
T ss_pred CHHHHHhC
Confidence 99999875
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.6e-48 Score=412.47 Aligned_cols=218 Identities=28% Similarity=0.432 Sum_probs=187.4
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhc-c
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD-Q 177 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~-~ 177 (987)
-|+++|++++|++ ..+|+||||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++...++ .
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred eEEEEEEEEEECC---eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhc
Confidence 4899999999974 45999999999999999999999999999999999999999999999999999998876554 5
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCCCC---------------CHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCCh
Q 001980 178 IGLVNQEPALFAT-TILENILYGKPEA---------------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSG 241 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSg 241 (987)
|+|+||+|.+|+. ||+||+.++.... ..++..+ .+.+.++.+ |+.........+|||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSg 153 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE-----KAFKILEFL--KLSHLYDRKAGELSG 153 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHH-----HHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred CCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHH-----HHHHHHHhc--CcchhccCchhhCCc
Confidence 9999999999876 9999999863210 1111111 112334443 666666778889999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecC
Q 001980 242 GQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGT 319 (987)
Q Consensus 242 GqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 319 (987)
|||||++|||||+.+|++|||||||++||+.+++.+++.|++++ +|+|||+|||+++++.. ||||++|++|+|+++|+
T Consensus 154 G~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~ 233 (254)
T d1g6ha_ 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233 (254)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEec
Confidence 99999999999999999999999999999999999999999885 58999999999999865 89999999999999999
Q ss_pred hHHHHHh
Q 001980 320 HEELIAK 326 (987)
Q Consensus 320 ~~~l~~~ 326 (987)
++|+.++
T Consensus 234 ~~e~~~~ 240 (254)
T d1g6ha_ 234 GEEEIKN 240 (254)
T ss_dssp SHHHHHH
T ss_pred HHHHhhc
Confidence 9987653
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.2e-48 Score=402.92 Aligned_cols=218 Identities=33% Similarity=0.534 Sum_probs=187.6
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
+++ ++..+|.+ . .+ ||||+++ ||.+||+||||||||||+++|.|+++|++|+|.+||+|+.+++.. |++||
T Consensus 3 l~v-~~~k~~g~---~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGN---F-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETT---E-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECC---E-EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCce
Confidence 455 46677732 1 24 8999995 789999999999999999999999999999999999999988764 78999
Q ss_pred EEcccccccc-ccHHHHhccCCCCCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 001980 825 LVQQEPALFA-ASIFDNIAYGKEGATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 899 (987)
Q Consensus 825 ~VpQdp~lF~-gTIreNL~~~~~~~sd~----ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAll 899 (987)
||||+|.||. -||+|||.++....+.. .+.++++.+++.++..+.| ..||||||||++|||||+
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----------~~LSGG~kQRvaiAral~ 142 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-----------ARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCG-----------GGSCHHHHHHHHHHHHHT
T ss_pred eeccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCCh-----------hhCCHHHHHHHHHHHHHh
Confidence 9999999996 59999999886555543 4566777777766554443 469999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCCCchH
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAY 976 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~~g~f 976 (987)
++|+|||||||||+||+.+...|++.|++..+ +.|+|+|||+++.+.. ||||+||++|+|++.|+|+|+++.++...
T Consensus 143 ~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v 222 (240)
T d2onka1 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEV 222 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSH
T ss_pred ccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCCHHH
Confidence 99999999999999999999999999998743 8999999999998876 89999999999999999999999887766
Q ss_pred HHHHHh
Q 001980 977 SRLLQL 982 (987)
Q Consensus 977 ~~l~~~ 982 (987)
++++..
T Consensus 223 ~~fl~~ 228 (240)
T d2onka1 223 AEFLSA 228 (240)
T ss_dssp HHHGGG
T ss_pred HHHhCc
Confidence 666543
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.5e-48 Score=412.64 Aligned_cols=213 Identities=22% Similarity=0.406 Sum_probs=182.8
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhc-c
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL-K 822 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~-~ 822 (987)
-|+++||+++|. +.+||+||||+|++||.+||+||||||||||+++|.|+++|++|+|+++|.|+...+..+.++ .
T Consensus 4 iL~v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred eEEEEEEEEEEC---CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhc
Confidence 489999999995 346999999999999999999999999999999999999999999999999999999988655 5
Q ss_pred cEEEcccccccc-ccHHHHhccCCCC---------------CCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCC
Q 001980 823 IGLVQQEPALFA-ASIFDNIAYGKEG---------------ATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGV 882 (987)
Q Consensus 823 i~~VpQdp~lF~-gTIreNL~~~~~~---------------~sd----~ei~~al~~a~l~~~i~~lp~gldt~vge~G~ 882 (987)
|+++||+|.+|. -|++|||.++... ..+ ++..++++..++.+. .|.++ .
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~ 149 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-------YDRKA----G 149 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-------TTSBG----G
T ss_pred CCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchh-------ccCch----h
Confidence 999999998885 6999999765210 111 223344444444432 23334 4
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEE
Q 001980 883 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIV 960 (987)
Q Consensus 883 ~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~iv 960 (987)
+||||||||++|||||+.+|++|||||||++||+.+.+.|++.|++.. +|+|||+|+|+++.+.. ||||+||++|+|+
T Consensus 150 ~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv 229 (254)
T d1g6ha_ 150 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 229 (254)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEE
Confidence 699999999999999999999999999999999999999999999874 68999999999999865 8999999999999
Q ss_pred EecChhHHhc
Q 001980 961 EQGSHSELVS 970 (987)
Q Consensus 961 e~Gt~~eLl~ 970 (987)
++|+|+|+.+
T Consensus 230 ~~g~~~e~~~ 239 (254)
T d1g6ha_ 230 AEGRGEEEIK 239 (254)
T ss_dssp EEEESHHHHH
T ss_pred EEecHHHHhh
Confidence 9999999764
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.2e-48 Score=405.81 Aligned_cols=215 Identities=24% Similarity=0.409 Sum_probs=186.8
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcc
Q 001980 743 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 822 (987)
Q Consensus 743 g~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~ 822 (987)
|.|+++|++++|. +.+||+||||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.|+.+. .+.+|++
T Consensus 1 gaI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTT
T ss_pred CCEEEEeEEEEEC---CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccC-hHHHHhh
Confidence 6799999999995 34699999999999999999999999999999999999999999999999999874 5678999
Q ss_pred cEEEcccccccc-ccHHHHhccCC--CCCCHHH----HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 001980 823 IGLVQQEPALFA-ASIFDNIAYGK--EGATEAE----VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 895 (987)
Q Consensus 823 i~~VpQdp~lF~-gTIreNL~~~~--~~~sd~e----i~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 895 (987)
++||||++.+|. -|++||+.+.. ...+.++ +.++++..++.++.. .++ .+||||||||++||
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~lSgG~~qrv~iA 145 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-------DRV----STYSKGMVRKLLIA 145 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-------SBG----GGCCHHHHHHHHHH
T ss_pred EeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHh-------hhh----hhCCHHHHHHHHHH
Confidence 999999998886 49999996532 1233444 344555566655433 233 46999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcCC
Q 001980 896 RAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRP 972 (987)
Q Consensus 896 RAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~~ 972 (987)
|||+.+|+||||||||++||+.+.+.|++.|++.. +|+|||++||+++.+.. ||||+||++|+|++.|+|++|.++.
T Consensus 146 ~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 146 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 224 (238)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhcc
Confidence 99999999999999999999999999999999875 68999999999999986 8999999999999999999998653
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.8e-48 Score=403.23 Aligned_cols=218 Identities=25% Similarity=0.413 Sum_probs=188.7
Q ss_pred ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcc
Q 001980 98 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 177 (987)
Q Consensus 98 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 177 (987)
+.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .+..+++.
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCEEEEeEEEEECC---EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc-ChHHHHhh
Confidence 35899999999974 459999999999999999999999999999999999999999999999999876 45677889
Q ss_pred eEEEcCCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhc
Q 001980 178 IGLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 254 (987)
Q Consensus 178 i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~ 254 (987)
++||||++.+|+. |++||+.+... .....++.+..+. .++.+ |+.....++..+||||||||++|||||+
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~-----~l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~ 149 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER-----ATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 149 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHH-----HHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHH-----HHHhC--CCHHHHhhhhhhCCHHHHHHHHHHHHHh
Confidence 9999999999876 99999976421 1233344333222 22222 6666777888899999999999999999
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
.+|+++||||||++||+.++..+++.++++. +|+|||++||+++++.. ||||++|++|+|++.|+++++.++
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 9999999999999999999999999999885 58999999999999886 899999999999999999999754
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=6.5e-48 Score=397.53 Aligned_cols=212 Identities=30% Similarity=0.471 Sum_probs=183.2
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 100 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 100 i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
+++ ++.++|++- .+ |+||++. ||+++|+||||||||||+++|+|+++|++|+|.++|+++..+++. +++||
T Consensus 3 l~v-~~~k~~g~~----~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGNF----RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETTE----EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECCE----EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCce
Confidence 566 578888632 23 7999995 689999999999999999999999999999999999999888764 67899
Q ss_pred EEcCCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCC
Q 001980 180 LVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 258 (987)
Q Consensus 180 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~ 258 (987)
||||++.+|+. ||+|||.|+.......+..+. +.+.++.+ |+.......+.+||||||||++|||||+.+|+
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~-----v~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ 146 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHH-----HHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred eeccchhhcccchhhHhhhhhhcccCHHHHHHH-----HHHHHHhc--CcHhhhhCChhhCCHHHHHHHHHHHHHhccCC
Confidence 99999999976 999999998654443333221 23445555 77777888999999999999999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHhh
Q 001980 259 ILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 327 (987)
Q Consensus 259 illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 327 (987)
++|||||||+||+.++..+++.++++.+ |.|+|+|||+++++.. ||||++|++|+|++.|+++|+++..
T Consensus 147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~ 218 (240)
T d2onka1 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred ceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCC
Confidence 9999999999999999999999999853 8999999999999876 8999999999999999999998643
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.4e-44 Score=371.07 Aligned_cols=208 Identities=24% Similarity=0.399 Sum_probs=183.5
Q ss_pred EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccE
Q 001980 745 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 824 (987)
Q Consensus 745 I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~ 824 (987)
++++||+++| +|+||||+|++||.+||+||||||||||+++|.|++ |++|+|.++|.|+...+.+.++...+
T Consensus 4 l~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEECcccCc-------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence 7899998665 599999999999999999999999999999999986 58999999999999999999999999
Q ss_pred EEccccc-cccccHHHHhccCCCCCC-HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc--
Q 001980 825 LVQQEPA-LFAASIFDNIAYGKEGAT-EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK-- 900 (987)
Q Consensus 825 ~VpQdp~-lF~gTIreNL~~~~~~~s-d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr-- 900 (987)
+++|+.. .|..++.+|+.++..+.+ .+.+.++++..++.+++. ....+||||||||++|||||++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----------RSTNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTT-----------SBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred eeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhC-----------cChhhcCHHHHHHHHHHHHHHhhC
Confidence 9999986 477889999986655444 555677777777665432 3345799999999999999997
Q ss_pred -----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001980 901 -----NPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 971 (987)
Q Consensus 901 -----~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~-~D~Iivl~~G~ive~Gt~~eLl~~ 971 (987)
+|+||||||||++||+.+.+.|++.|++.. +|+|||+|+|+++.+.. ||||+||++|+|++.|+|+|++.+
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence 779999999999999999999999999874 68999999999998655 899999999999999999999865
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.1e-43 Score=365.81 Aligned_cols=209 Identities=24% Similarity=0.373 Sum_probs=181.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
-++++||+++| +|+||||+|++||+++|+||||||||||+++|+|+. |++|+|.++|+++..++...++...
T Consensus 3 il~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECcccCc-------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhc
Confidence 37899997654 589999999999999999999999999999999975 6899999999999999998888889
Q ss_pred EEEcCCCCC-chhcHHHHHhcCCCCCC-HHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhcc-
Q 001980 179 GLVNQEPAL-FATTILENILYGKPEAT-MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK- 255 (987)
Q Consensus 179 ~~v~Q~~~l-~~~tv~eni~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~- 255 (987)
+|++|+... |..++.+|+.++..... .+.+.++++. + +++..++++..+||||||||++|||||++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---------~--~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA---------L--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHH---------T--TCTTTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred eeeeccccCCccccHHHHhhhccchhhHHHHHHHHHHh---------c--CCHhHhCcChhhcCHHHHHHHHHHHHHHhh
Confidence 999999764 56799999988765433 3333333322 2 55666778888999999999999999997
Q ss_pred ------CCCEEEEeCCCCCCChHHHHHHHHHHHhhh-CCCeEEEEcCCCCcccc-CCEEEEEeCCEEEEecChHHHHHh
Q 001980 256 ------NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK 326 (987)
Q Consensus 256 ------~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 326 (987)
+|+|+||||||++||+.++..+.+.++++. +|+|||++||+++.+.. ||||++|++|+|+++|+++|++..
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence 779999999999999999999999999885 59999999999998755 899999999999999999999764
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.2e-41 Score=343.83 Aligned_cols=191 Identities=21% Similarity=0.400 Sum_probs=161.1
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhccc
Q 001980 744 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 744 ~I~f~~vsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|+++|+|++|. .+||+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||+++.+ +|.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred eEEEEEEEEEeC----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcE
Confidence 489999999993 369999999999999999999999999999999999999999999999998864 67899
Q ss_pred EEEcccccccc-ccHHHHhcc----CCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHH
Q 001980 824 GLVQQEPALFA-ASIFDNIAY----GKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 898 (987)
Q Consensus 824 ~~VpQdp~lF~-gTIreNL~~----~~~~~sd~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAl 898 (987)
+++||++.++. -|+++|+.+ .....+++++.++++..++.+ ++..++ +||||||||++|||||
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~----~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKKKLG----ELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTSBGG----GSCHHHHHHHHHHHHT
T ss_pred EEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc--------cccccC----cCCCcHHHHHHHHHHH
Confidence 99999998875 489999853 234567889999988877654 223333 5999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeC
Q 001980 899 LKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 956 (987)
Q Consensus 899 lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iivl~~ 956 (987)
+++|+++||||||++||+++.+.+++.|.+..+++++++|+|+- .+..||++.+|.+
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred hcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEec-hhhhcchhhheee
Confidence 99999999999999999999999999999876544444444442 2456999998853
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.3e-40 Score=337.51 Aligned_cols=189 Identities=19% Similarity=0.345 Sum_probs=152.2
Q ss_pred cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcce
Q 001980 99 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 178 (987)
Q Consensus 99 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 178 (987)
.|+++|+||+|+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ++.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred eEEEEEEEEEeC----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcE
Confidence 389999999995 248999999999999999999999999999999999999999999999998853 56789
Q ss_pred EEEcCCCCCchh-cHHHHHhcC----CCCCCHHHHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHh
Q 001980 179 GLVNQEPALFAT-TILENILYG----KPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 253 (987)
Q Consensus 179 ~~v~Q~~~l~~~-tv~eni~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal 253 (987)
+|+||++.++.. |++||+.+. ......+++.++++.. ..+ + +.++..+||||||||++|||||
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~~--~----~~~~~~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV------EVL--D----LKKKLGELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHT------TCC--C----TTSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHc------CCc--c----cccccCcCCCcHHHHHHHHHHH
Confidence 999999988765 999998653 1233444544433222 111 1 2345568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC--CCeEEEEcCCCCccccCCEEEEEeC
Q 001980 254 LKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQ 311 (987)
Q Consensus 254 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~~l~~ 311 (987)
+.+|+++||||||++||+.+++.+++.|.++.+ +.++|..+|+ +..||++.+|++
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~---l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE---LSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC---CTTSSEEEEGGG
T ss_pred hcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEech---hhhcchhhheee
Confidence 999999999999999999999999999988754 3333333343 457999988753
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.94 E-value=1.7e-23 Score=229.00 Aligned_cols=316 Identities=16% Similarity=0.226 Sum_probs=282.4
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 407 YFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYF 486 (987)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (987)
.+++++++.+++++.+++++++.++.++.....++++..+++......+ ......+.++++++.++..++.+++.++
T Consensus 3 ~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~l~~~~~~~~~~~~~~~i~~~~~~~~ 79 (319)
T d3b60a2 3 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD---RSVLLWMPLVVIGLMILRGITSYISSYC 79 (319)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT---HHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 4678888888999988888888888888888888888877765432221 1222334566777777888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001980 487 FSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWR 566 (987)
Q Consensus 487 ~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (987)
..+.+.+...++|+++++++++.|+.||+. +++|++++|+++|++.+...+...+...+..++.+++++++++..+|.
T Consensus 80 ~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~--~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 157 (319)
T d3b60a2 80 ISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 157 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSTHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhhhhhccccchhhHHHHhhcccchhhccc--cccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhcc
Confidence 999999999999999999999999999986 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHHHHH
Q 001980 567 VSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL 646 (987)
Q Consensus 567 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (987)
+++++++++|+..+......++.++..++.++...+....+.|.++|+++||+|+.|+.+.+++++..++..+...+...
T Consensus 158 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 237 (319)
T d3b60a2 158 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 237 (319)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHHH
Confidence 99999999999998888888888887888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 001980 647 TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRST 726 (987)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~ 726 (987)
.................++++++|..++..|.++.|++++++.+......|+..+......+.++..+.+|+.+++|.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~ 317 (319)
T d3b60a2 238 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHhcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 001980 727 R 727 (987)
Q Consensus 727 ~ 727 (987)
|
T Consensus 318 E 318 (319)
T d3b60a2 318 E 318 (319)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.93 E-value=1.9e-23 Score=229.24 Aligned_cols=317 Identities=13% Similarity=0.161 Sum_probs=275.6
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhH----HHHHHHHHHHHHHHHHHHHH
Q 001980 408 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTK----EFVFIYIGAGLYAVVAYLIQ 483 (987)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 483 (987)
+++++++.+++++.++.+++++++.++.....+++++.+++............... .+...++++.+...++.+++
T Consensus 2 lKrl~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (323)
T d2hyda2 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (323)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888888888777777788888888887765443221111111 11222334445566777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 484 HYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIV 563 (987)
Q Consensus 484 ~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ffd~~~~~~g~i~~r~s~D~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 563 (987)
.++..+.+.+...++|.+++++++++|++||++ +++|++++|+++|++.+.+.+...+...+..++.+++.+++++..
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT--SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhhhccccccccc--ccccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhh
Confidence 888999999999999999999999999999985 789999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHchHHHHHHhccHHHHHHHHHHHHhHHHHHHHH
Q 001980 564 EWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLR 643 (987)
Q Consensus 564 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIraf~~~~~~~~~~~~~~~~~~~~~~~ 643 (987)
+|.+++++++.+|+.++......+..++..++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhH
Confidence 99999999999999998888888888888888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001980 644 RSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLD 723 (987)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~ 723 (987)
.................+..++++++|.+++..|.+++|+++.+..+......++..+.....++.++..+++|+.+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhhhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999998888899999999999999999999999999998
Q ss_pred ccC
Q 001980 724 RST 726 (987)
Q Consensus 724 ~~~ 726 (987)
+++
T Consensus 320 ~e~ 322 (323)
T d2hyda2 320 EDY 322 (323)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.70 E-value=5.8e-19 Score=176.19 Aligned_cols=171 Identities=12% Similarity=0.034 Sum_probs=117.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCCHHHHH
Q 001980 775 SQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVV 854 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~sd~ei~ 854 (987)
||+|+||+|||||||++.|.|+++|..|.+.+++.+....+.........+.++.+.++..+..++..........+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQY-- 79 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHH--
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhcCcch--
Confidence 799999999999999999999999999999999877665444333333344444555554444433322211111111
Q ss_pred HHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CC
Q 001980 855 EAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RG 932 (987)
Q Consensus 855 ~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~ 932 (987)
..+|+|++|+.++++++.++|++|++|||+...+. ....++.+.+.. .+
T Consensus 80 ---------------------------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 80 ---------------------------FEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPN 130 (178)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTT
T ss_pred ---------------------------hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchh--hHHHHHHHHHHhccCC
Confidence 13789999999999999999999999998655432 233444444443 36
Q ss_pred CeEEEEecCchhhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHH
Q 001980 933 RTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 981 (987)
Q Consensus 933 ~TvI~IaHRl~ti~~~D~Iivl~~G~ive~Gt~~eLl~~~~g~f~~l~~ 981 (987)
+|+|+++|+.+....+|++..+++|++++-+.. +.+..+.+.++
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~-----nrd~~~~~i~~ 174 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE-----NRDVILEDILS 174 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCTT-----TTTTHHHHHHH
T ss_pred CEEEEEEccHHHHHhhceEEEEeCCEEEEECCc-----cHHHHHHHHHH
Confidence 899999999988788999999999999987542 22445555543
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.65 E-value=2.2e-18 Score=171.91 Aligned_cols=158 Identities=15% Similarity=0.077 Sum_probs=102.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHHHHH
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVE 209 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 209 (987)
+++|+||||||||||++.|+|+++|..|.+.+++.+....+.........+.++.+.++..+...+..++..
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 73 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSY-------- 73 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTE--------
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhh--------
Confidence 589999999999999999999999999999998765433221110001111112222222222111111110
Q ss_pred HHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhh--CC
Q 001980 210 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VG 287 (987)
Q Consensus 210 ~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~ 287 (987)
+.+ .....+|+|+++|.++++++.++|+++++|||....+ ....+.+.+.+.. .+
T Consensus 74 -----------------~~~----~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 74 -----------------GVN----VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPN 130 (178)
T ss_dssp -----------------EEC----HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTT
T ss_pred -----------------hcC----cchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHhccCC
Confidence 000 0011478999999999999999999999999854432 2233444444443 37
Q ss_pred CeEEEEcCCCCccccCCEEEEEeCCEEEEec
Q 001980 288 RTTVVVAHRLSTIRNVDTVAVIQQGQVVETG 318 (987)
Q Consensus 288 ~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g 318 (987)
.|+|+++|+......+|++..+++|++++-+
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~ 161 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECC
T ss_pred CEEEEEEccHHHHHhhceEEEEeCCEEEEEC
Confidence 8999999998877778999999999998754
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.26 E-value=8.2e-12 Score=141.35 Aligned_cols=73 Identities=22% Similarity=0.293 Sum_probs=62.5
Q ss_pred CCCChHHHHHHHHHHHh----ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhC-CCeEEEEcCCCCccccCCEEEEE
Q 001980 237 VQLSGGQKQRIAIARAM----LKNPKILLLDEATSALDAGSESIVQEALDRLMV-GRTTVVVAHRLSTIRNVDTVAVI 309 (987)
Q Consensus 237 ~~LSgGqkqRialARal----~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~~d~i~~l 309 (987)
..||||||.+++||-.+ +.++++++||||+++||+.....+.+.|.++.. +.-+|++||+++.+..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 45799999998876433 568899999999999999999999999988753 44599999999999999998755
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.19 E-value=6e-11 Score=128.10 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=66.3
Q ss_pred CCCChHHHHHHHHHHHh----ccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCEEEE--Ee
Q 001980 237 VQLSGGQKQRIAIARAM----LKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAV--IQ 310 (987)
Q Consensus 237 ~~LSgGqkqRialARal----~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~~--l~ 310 (987)
..+|+|||+...++..+ ..++.++++|||-++|+|...+.+.+.|++..++.-+|++||++..+..+|+++. ++
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEe
Confidence 46999999998776653 4578999999999999999999999999988777889999999999999999866 56
Q ss_pred CC
Q 001980 311 QG 312 (987)
Q Consensus 311 ~G 312 (987)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
Confidence 66
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.18 E-value=3.2e-11 Score=136.34 Aligned_cols=73 Identities=22% Similarity=0.266 Sum_probs=62.6
Q ss_pred CCCChhHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEE
Q 001980 882 VQLSGGQKQRIAIARAV----LKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVV 954 (987)
Q Consensus 882 ~~LSgGQrQrlaLARAl----lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHRl~ti~~~D~Iivl 954 (987)
..||||||.+++||-.+ ..++||++||||+++||+.....+.+.|.+.. .++-+|+|||++.++..+|+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 45799999998877433 46789999999999999999999999998874 455699999999999999998755
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.08 E-value=3.4e-10 Score=122.04 Aligned_cols=76 Identities=22% Similarity=0.341 Sum_probs=67.0
Q ss_pred CCCChhHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEE--Ee
Q 001980 882 VQLSGGQKQRIAIARAV----LKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGV--VQ 955 (987)
Q Consensus 882 ~~LSgGQrQrlaLARAl----lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~Iiv--l~ 955 (987)
..+|+|||+++.++..+ ..+++++++|||-++|++.....+.+.|++..++.-+|++||++..+..+|+++. ++
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEe
Confidence 35899999998777653 4567999999999999999999999999999888899999999999999999855 66
Q ss_pred CC
Q 001980 956 DG 957 (987)
Q Consensus 956 ~G 957 (987)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
Confidence 77
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=5.2e-06 Score=80.63 Aligned_cols=160 Identities=11% Similarity=0.024 Sum_probs=83.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCC------CCC
Q 001980 775 SQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK------EGA 848 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~------~~~ 848 (987)
.|.|+||+|+|||||++.+.+.+....+.+.+.+.+........+...+..+.|+...+.....++..... ...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVV 82 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccccccccccccccccccchhhhhhhhhhhhhhhhhccccccccc
Confidence 48999999999999999999999877777766655543333333333344444554333222222221111 111
Q ss_pred CHHHHHHHHHHcCchhhHhh-CCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001980 849 TEAEVVEAARAANVHGFVSA-LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 927 (987)
Q Consensus 849 sd~ei~~al~~a~l~~~i~~-lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~ 927 (987)
..+++.+.. ... .+.+.. ...+.+..+.+.....+......+.+-+.++..++++++...+..-+.. ..+.+.++
T Consensus 83 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 158 (189)
T d2i3ba1 83 DLTSFEQLA-LPV-LRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKP--LALVEEIR 158 (189)
T ss_dssp CHHHHHTTT-TTT-TCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSC--CTTHHHHH
T ss_pred cHHHHHHHH-HHH-HHHHHHHhhcCCCeeEeeccccchhhhHHHHHHHHHHhccCceEEEeccccCCcch--HHHHHHHh
Confidence 222222111 111 111111 1234455555555566777778888888888888776554333322221 12233343
Q ss_pred HHcCCCeEEEEe
Q 001980 928 RLMRGRTTVLVA 939 (987)
Q Consensus 928 ~~~~~~TvI~Ia 939 (987)
+ .++.+++.++
T Consensus 159 ~-~~~~~~~~lt 169 (189)
T d2i3ba1 159 N-RKDVKVFNVT 169 (189)
T ss_dssp T-TCCSEEEECC
T ss_pred C-CCCCeEEEEC
Confidence 3 3456666654
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.23 E-value=0.00066 Score=67.56 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=33.0
Q ss_pred cCCCEEEEeCCCCCCChHHHHHHHHHH-Hhhh-CCCeEEEEcCCCCccc
Q 001980 255 KNPKILLLDEATSALDAGSESIVQEAL-DRLM-VGRTTVVVAHRLSTIR 301 (987)
Q Consensus 255 ~~~~illlDEpts~LD~~~~~~i~~~l-~~~~-~~~tvi~vtH~~~~~~ 301 (987)
.+..++|+||+..+=|+.....+...+ +.+. .+.+++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 345699999999999998544444333 3343 3778999999866543
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.20 E-value=0.00047 Score=72.33 Aligned_cols=77 Identities=8% Similarity=0.018 Sum_probs=69.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001980 5 LGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKP 81 (987)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~~ 81 (987)
...+...++..+..++++++|++++.+|.+++|++++++.+......|+..+...+..+.++++|++|+.+++|++|
T Consensus 246 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 246 YSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred hccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 34566777788888899999999999999999999998888888889999999999999999999999999998765
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.0013 Score=65.97 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=31.0
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHH-HHhhh-C-CCeEEEEcCCCCcc
Q 001980 256 NPKILLLDEATSALDAGSESIVQEA-LDRLM-V-GRTTVVVAHRLSTI 300 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~-l~~~~-~-~~tvi~vtH~~~~~ 300 (987)
+..++|+||+..+=|+.....+... +..+. + +..+|++||..+..
T Consensus 120 ~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 120 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred cccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 4459999999999999866555444 44453 3 45677788865543
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=6.2e-06 Score=80.08 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=28.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD 162 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~ 162 (987)
+.+.|+||+|||||||++.+++.+....+.+.+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~ 35 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGF 35 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 3588999999999999999999987766655443
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.82 E-value=0.002 Score=66.36 Aligned_cols=34 Identities=32% Similarity=0.342 Sum_probs=27.2
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g 150 (987)
.|+++.-=+.+|+++.|.|++|+|||||+.-++-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3555543478999999999999999999877653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.82 E-value=0.0003 Score=69.65 Aligned_cols=34 Identities=29% Similarity=0.358 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL 160 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~ 160 (987)
+|+.++++|+||+|||||++.|.|...-..|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 6999999999999999999999998777777764
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.76 E-value=0.0013 Score=67.85 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=27.8
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 001980 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 762 vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~r 795 (987)
-|+++..=+.||+.+.|.|++|+||||++.-+..
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4666554489999999999999999999876653
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.75 E-value=0.0004 Score=73.39 Aligned_cols=46 Identities=28% Similarity=0.461 Sum_probs=36.0
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHH
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK 817 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~ 817 (987)
++.|..+.|+|+|||||||++++|++..+|..=-|.| .|..++.+.
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti--Ed~~El~l~ 208 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI--EDTEEIVFK 208 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE--ESSCCCCCS
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccccceeec--cchhhhhcc
Confidence 4556679999999999999999999999987666777 344555443
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.74 E-value=0.00027 Score=68.27 Aligned_cols=27 Identities=37% Similarity=0.470 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCC
Q 001980 128 GKTVAVVGGSGSGKSTVVSLIERFYDP 154 (987)
Q Consensus 128 G~~~~ivG~sGsGKSTLl~~l~g~~~~ 154 (987)
|++++|+||||||||||++.|...++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 899999999999999999999887753
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.72 E-value=0.0039 Score=61.80 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=35.1
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh
Q 001980 900 KNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR 946 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHRl~ti~ 946 (987)
.+..++|+||.-.+=|++.-..+-.++-+.+ .+++++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 4556999999999999977666555555443 3789999999866543
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.68 E-value=0.00027 Score=68.30 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 773 GQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
|..+.|+||||||||||++.|..-++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987664
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.66 E-value=0.0037 Score=57.57 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=23.4
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD 162 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~ 162 (987)
+++.|+|++|||||||++.|.... .|...++
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~ 33 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC---CCCEEec
Confidence 478899999999999999875432 2455554
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.0019 Score=66.37 Aligned_cols=29 Identities=34% Similarity=0.504 Sum_probs=23.7
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHh
Q 001980 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIE 794 (987)
Q Consensus 762 vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~ 794 (987)
++.++ .||+.+.|+|++|+|||||+.-|.
T Consensus 22 li~G~----~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 22 VLPNM----VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EETTE----ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HhCCc----cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 55553 469999999999999999987654
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.57 E-value=0.00037 Score=66.42 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG 808 (987)
.|+.|.|+|++||||||+.+.|.+-+.. --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC--CEEEecH
Confidence 5889999999999999999999886532 1356665
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.56 E-value=0.00059 Score=67.44 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCCCCCceEE
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 805 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~ 805 (987)
+|++.+++|+||.|||||++.|.+-....-|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 5899999999999999999999987666566654
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.55 E-value=0.00053 Score=65.26 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.|++++|+||+||||||+.+.|...+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999998875
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.00029 Score=66.79 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYDP 154 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~~ 154 (987)
+++|+|++|||||||++.|...+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999876543
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.54 E-value=0.00028 Score=70.10 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEE
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL 160 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~ 160 (987)
+|+.++++|+||+|||||++.|.|...-..|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 6899999999999999999999998777777775
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.00035 Score=66.17 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=22.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCC
Q 001980 775 SQALVGASGSGKSSVIALIERFYDPT 800 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~p~ 800 (987)
.++|+|++|||||||++.|.+-+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 58999999999999999998766543
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.43 E-value=0.00081 Score=64.83 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 001980 775 SQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl 796 (987)
+|||+|++|+|||||++.|++-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999999864
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=9.6e-05 Score=72.59 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=28.8
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
.+++.++++.+| +++|+|||||||||++.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 357778888776 9999999999999999999643
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.33 E-value=0.014 Score=58.13 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=31.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHc--CCCeEEEEecCchh
Q 001980 900 KNPAILLLDEATSALDAESECVLQEA-LERLM--RGRTTVLVAHRLST 944 (987)
Q Consensus 900 r~p~ILlLDEaTS~LD~~te~~I~~~-l~~~~--~~~TvI~IaHRl~t 944 (987)
.+..++|+||.-++=|+..-..+-.+ ++.+. .++.+++.||..+.
T Consensus 119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred ccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHH
Confidence 34569999999999998777666555 44442 34678888886543
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.32 E-value=0.0043 Score=63.59 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.2
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHH
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIE 149 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~ 149 (987)
.+|+++.|.|++|+|||||+-.|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 469999999999999999986654
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.0082 Score=60.75 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
+..-+.+.||+|||||++++.|+..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 345678999999999999999998763
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.28 E-value=0.0011 Score=61.31 Aligned_cols=32 Identities=25% Similarity=0.209 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 001980 774 QSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG 808 (987)
+.|.|+|++||||||+++.|.+-. .|...++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC---CCCEEech
Confidence 468899999999999999876532 35555543
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.26 E-value=0.0078 Score=56.99 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=20.9
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhc
Q 001980 771 RAGQSQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~r 795 (987)
++-+.|-+||.+||||||+++-|+.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3346799999999999999988754
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.24 E-value=0.00092 Score=63.65 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.+|-++.|+|++||||||+.+.|+..+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999998654
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.19 E-value=0.00095 Score=63.57 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=24.8
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
++|-.|.|+|.+||||||+.+.|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999997653
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.17 E-value=0.006 Score=61.08 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.8
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcC
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
+++|+.+.|.|++|||||||+.-++-.
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999999999999766543
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.16 E-value=0.00092 Score=63.21 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=26.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCCC---ceEEECCc
Q 001980 775 SQALVGASGSGKSSVIALIERFYDPTA---GKVMIDGK 809 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~p~~---G~I~idG~ 809 (987)
.++|+|++|||||||+.-|.+.+.... |.|.-|+.
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccC
Confidence 579999999999999998888776542 33444543
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.15 E-value=0.00069 Score=64.12 Aligned_cols=27 Identities=26% Similarity=0.149 Sum_probs=23.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCC
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFYDPN 155 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~~~~ 155 (987)
++++|+|++|||||||++-|...+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 368999999999999999888876543
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.11 E-value=0.0011 Score=65.04 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
+|.++.|+||||||||||.+.|.-.++
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 589999999999999999999887654
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.11 E-value=0.0012 Score=62.50 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998754
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.07 E-value=0.0015 Score=64.07 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=36.7
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCCC--------------CCceEEECCccCCCCCHHHHhccc
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYDP--------------TAGKVMIDGKDIRRLNLKSLRLKI 823 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~p--------------~~G~I~idG~di~~i~l~~lR~~i 823 (987)
.|..+.|+||||||||||.+.|..-++. ..|+ +||+|.--++.+...+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E--~~G~dY~Fvs~~~F~~~i 64 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGE--VHGEHYFFVNHDEFKEMI 64 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccc--cccccceeecHHHHHHHh
Confidence 4889999999999999999988765432 1233 577777777777665543
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.05 E-value=0.0012 Score=63.09 Aligned_cols=24 Identities=46% Similarity=0.775 Sum_probs=22.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+.++|+||+|||||||++.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999866
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.04 E-value=0.0059 Score=59.66 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=16.2
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 773 GQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
-..+++|||+|+||||.+.=|...+.
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35589999999999998765555543
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.03 E-value=0.0015 Score=61.78 Aligned_cols=27 Identities=26% Similarity=0.596 Sum_probs=24.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
|+|-.++|.||+||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 577889999999999999999998765
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.98 E-value=0.0013 Score=63.94 Aligned_cols=22 Identities=41% Similarity=0.388 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 001980 775 SQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl 796 (987)
+|+|||++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999974
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.96 E-value=0.0015 Score=61.99 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCC
Q 001980 128 GKTVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 128 G~~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
.+++.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999999874
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.018 Score=58.04 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
+...+-+.||+|+|||++++.|.+.+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 345588999999999999999998764
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.95 E-value=0.011 Score=58.92 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=23.2
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhc
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~r 795 (987)
+++|+.+-|.|++||||||++.-+..
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 88999999999999999999865544
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.93 E-value=0.0015 Score=63.19 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCC
Q 001980 775 SQALVGASGSGKSSVIALIERFYDP 799 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~p 799 (987)
.|||.|++|||||||++.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4899999999999999999876653
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.92 E-value=0.00069 Score=67.19 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCCCCCceEE
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 805 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~ 805 (987)
+|++..++|+||.|||||++.|.+-....-|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 4788999999999999999999987666666664
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.92 E-value=0.0017 Score=61.38 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=24.8
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
|+|-+|.|.|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 5688899999999999999999987653
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=95.88 E-value=0.0035 Score=63.83 Aligned_cols=174 Identities=17% Similarity=0.146 Sum_probs=93.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccCC--CCCceEEECCccCCCCCHHHHhcccEEEccccc-cccccHHHHhccCCCCCCH-
Q 001980 775 SQALVGASGSGKSSVIALIERFYD--PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPA-LFAASIFDNIAYGKEGATE- 850 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~--p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~-lF~gTIreNL~~~~~~~sd- 850 (987)
.|||+|+.|||||||+..|+..-- ...|++. +|..+.+...++-.+++++-+.-.. .+.+ -+-|+.. .|.+.|
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~-~~~n~iD-tPGh~dF 80 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRG-HRVFLLD-APGYGDF 80 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETT-EEEEEEE-CCCSGGG
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCCeEEeecccccccc-cceeEEc-cCchhhh
Confidence 479999999999999998854321 2345543 5666777778877777765544322 2332 3446532 343333
Q ss_pred -HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEE---eCCCCCCCHHHHHHHHHHH
Q 001980 851 -AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLL---DEATSALDAESECVLQEAL 926 (987)
Q Consensus 851 -~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlL---DEaTS~LD~~te~~I~~~l 926 (987)
.|...+++.+...=++-.-.+ ....+-++.+-.|+.. +.|.++++ |.+ + |.. ...+.+
T Consensus 81 ~~e~~~al~~~D~avlvvda~~-----------Gv~~~t~~~~~~~~~~-~~p~~i~iNk~D~~--~-~~~---~~l~~~ 142 (267)
T d2dy1a2 81 VGEIRGALEAADAALVAVSAEA-----------GVQVGTERAWTVAERL-GLPRMVVVTKLDKG--G-DYY---ALLEDL 142 (267)
T ss_dssp HHHHHHHHHHCSEEEEEEETTT-----------CSCHHHHHHHHHHHHT-TCCEEEEEECGGGC--C-CHH---HHHHHH
T ss_pred hhhhhhhhcccCceEEEeeccC-----------CccchhHHHHHhhhhc-cccccccccccccc--c-cch---hhhhhH
Confidence 466677777755433322111 2555666666655532 34555554 653 2 332 233445
Q ss_pred HHHcCCCeEEEEecC----chhhhc--cCEEEEEeCCEEEEecChhHHh
Q 001980 927 ERLMRGRTTVLVAHR----LSTIRG--VDCIGVVQDGRIVEQGSHSELV 969 (987)
Q Consensus 927 ~~~~~~~TvI~IaHR----l~ti~~--~D~Iivl~~G~ive~Gt~~eLl 969 (987)
++.+....-+.+=.+ ..-+.+ ..+.+..++|.-.+..-|.++.
T Consensus 143 ~~~lg~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~ 191 (267)
T d2dy1a2 143 RSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEER 191 (267)
T ss_dssp HHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGH
T ss_pred HHHhccCcCeEeeeccCCceeEEeecCcceEEEecCCCCceeeCCHHHH
Confidence 555542221222111 112222 2566777888776665565544
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.83 E-value=0.0016 Score=61.50 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=25.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g 163 (987)
.++.|+||+||||||+++.|+..+. +.+.++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence 4789999999999999999998763 3444443
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.82 E-value=0.0015 Score=62.53 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhccC
Q 001980 774 QSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
.+|+|+|++|||||||++.|..-+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.81 E-value=0.0018 Score=62.67 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
++||.|++|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999976543
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.78 E-value=0.0022 Score=60.68 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 773 GQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
.+.|.|.|++||||||+.+.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46789999999999999999999875
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.76 E-value=0.0031 Score=60.48 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.+||+|++|+|||||++.|+|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999753
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.002 Score=60.72 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccC
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
+.+..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999998765
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.72 E-value=0.0017 Score=62.73 Aligned_cols=26 Identities=42% Similarity=0.576 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+|.++.|+|++||||||+.+.|+..+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999997654
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.71 E-value=0.021 Score=55.41 Aligned_cols=27 Identities=37% Similarity=0.741 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
++..+++|||+|+||||.+.=|...+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999998766666654
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.66 E-value=0.013 Score=59.77 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=24.4
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+++..-+.+.||+|+|||+|++.+++.+
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 4455668899999999999999999987
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.64 E-value=0.0023 Score=59.56 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999998765
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.57 E-value=0.0024 Score=61.06 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 001980 775 SQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl 796 (987)
.|+|||++|+|||||++.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999873
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.53 E-value=0.0027 Score=60.72 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+.++|+||||+|||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 579999999999999999888654
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.52 E-value=0.0027 Score=59.80 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.++|+||+||||||+.+.|+-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999997543
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.52 E-value=0.015 Score=56.64 Aligned_cols=97 Identities=19% Similarity=0.319 Sum_probs=49.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchhcHHHHHhcCCCCCCHH
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMA 206 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~ 206 (987)
+..++++|||+|+||||.+-=|+-.+. ..| ++|+++.=|.+=.. ..+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g------------------~kV~lit~Dt~R~g--------------a~e 57 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK-KKG------------------FKVGLVGADVYRPA--------------ALE 57 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH-HTT------------------CCEEEEECCCSSHH--------------HHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------------------CceEEEEeeccccc--------------hhH
Confidence 445789999999999997654444332 112 25777665542100 012
Q ss_pred HHHHHHHHHhHHHHHHhCCCCCcccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCh
Q 001980 207 EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 271 (987)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGqkqRialARal~~~~~illlDEpts~LD~ 271 (987)
++...+ +.+ |......+....+.-=. +=++..+...+.+++|.| |+|..+
T Consensus 58 QL~~~a---------~~l--~v~~~~~~~~~~~~~~~--~~a~~~~~~~~~d~IlID--TaGr~~ 107 (211)
T d1j8yf2 58 QLQQLG---------QQI--GVPVYGEPGEKDVVGIA--KRGVEKFLSEKMEIIIVD--TAGRHG 107 (211)
T ss_dssp HHHHHH---------HHH--TCCEECCTTCCCHHHHH--HHHHHHHHHTTCSEEEEE--CCCSCC
T ss_pred HHHHhc---------ccc--CcceeecccchhhhHHH--HHHHHHhhccCCceEEEe--cCCcCc
Confidence 222211 111 33333444444442222 225666677899999999 887644
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=95.51 E-value=1.4 Score=43.99 Aligned_cols=81 Identities=9% Similarity=0.046 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001980 427 IGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAI 506 (987)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 506 (987)
+.+.+..++..........++..+.+. ............+.++.++..++..+..++..+...+...++..++-.++
T Consensus 19 ~~~~i~~~~~~~~~~~~~~~~~~~id~---~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~ 95 (319)
T d3b60a2 19 IVAGIALILNAASDTFMLSLLKPLLDD---GFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRL 95 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHS---STTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccchhhHH
Confidence 334444444444444444444433321 11222223333334444444555666677777888888888888888887
Q ss_pred HhCC
Q 001980 507 LRNE 510 (987)
Q Consensus 507 l~~~ 510 (987)
.+.=
T Consensus 96 ~~~l 99 (319)
T d3b60a2 96 FGHM 99 (319)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7643
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.51 E-value=0.002 Score=61.62 Aligned_cols=27 Identities=30% Similarity=0.318 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCC
Q 001980 128 GKTVAVVGGSGSGKSTVVSLIERFYDP 154 (987)
Q Consensus 128 G~~~~ivG~sGsGKSTLl~~l~g~~~~ 154 (987)
.++++|.|++||||||+++.|.-.+..
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999765543
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.51 E-value=0.0039 Score=64.69 Aligned_cols=46 Identities=13% Similarity=0.307 Sum_probs=33.9
Q ss_pred EEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHH
Q 001980 776 QALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIF 838 (987)
Q Consensus 776 vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIr 838 (987)
|||.|++||||||+.+.|..+..-..+ ..++.+|++|.+..+...+
T Consensus 83 IGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l 128 (308)
T d1sq5a_ 83 ISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVL 128 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHH
T ss_pred EEEeCCCCCCCcHHHHHHHHHHhhhcC-----------------CCceEEEeeeeeECCchHH
Confidence 899999999999999999887642111 1347788888887765543
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.50 E-value=0.003 Score=59.01 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=38.1
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH-HHHHHHHHHcCCCeEEEEecCchhhhccCEE
Q 001980 885 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC-VLQEALERLMRGRTTVLVAHRLSTIRGVDCI 951 (987)
Q Consensus 885 SgGQrQrlaLARAllr~p~ILlLDEaTS~LD~~te~-~I~~~l~~~~~~~TvI~IaHRl~ti~~~D~I 951 (987)
...+...+..+...++++++++++=.-..-+...+. ...+.++....++.+|+|....+...+-...
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~ 131 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 131 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEE
T ss_pred ccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHHH
Confidence 345566667777778888876553222222222222 2334444444577888998888866544333
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.49 E-value=0.0098 Score=59.81 Aligned_cols=44 Identities=20% Similarity=0.427 Sum_probs=34.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTI 945 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti 945 (987)
+.+++|+||+=. |.......+.+.+.+....+.+|+++++++-+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccch
Confidence 457999999964 78888888888887655666788999988644
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.48 E-value=0.0022 Score=61.59 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 001980 775 SQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl 796 (987)
.|||+|++++|||||++.|.|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999864
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.48 E-value=0.0028 Score=60.51 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=25.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhccCCCCCce
Q 001980 774 QSQALVGASGSGKSSVIALIERFYDPTAGK 803 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~~p~~G~ 803 (987)
..|+|.|++||||||+++.|...+......
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCC
Confidence 579999999999999999998877654433
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.46 E-value=0.0091 Score=64.75 Aligned_cols=53 Identities=15% Similarity=0.319 Sum_probs=37.6
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccccCCE
Q 001980 247 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDT 305 (987)
Q Consensus 247 ialARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~ 305 (987)
-+|..+|=+|||+++..|.. |+++.....++- ..|..|+..-|--+...-.+|
T Consensus 218 ~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa---~tGhlV~tTlHa~~a~~~~~R 270 (401)
T d1p9ra_ 218 RGLRAILRQDPDVVMVGEIR---DLETAQIAVQAS---LTGHLVMSTLHTNTAVGAVTR 270 (401)
T ss_dssp HHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHH---HTTCEEEEEECCSSSHHHHHH
T ss_pred HHHHHHHhhcCCEEEecCcC---ChHHHHHHHHHH---hcCCeEEEEeccCchHhhhhh
Confidence 34666788899999999987 677665555433 358888888887665544444
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.45 E-value=0.0032 Score=59.52 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 001980 775 SQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl 796 (987)
+|+|+|++|+|||||++.|.|-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999874
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.45 E-value=0.0028 Score=62.40 Aligned_cols=23 Identities=39% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 001980 775 SQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
.|||.|++||||||+.+.|...+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999887665
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.43 E-value=0.0031 Score=59.32 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=25.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 001980 774 QSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG 808 (987)
..+.|+|++||||||+++.|.+-+. +...++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence 3589999999999999999998764 3455554
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.42 E-value=0.0027 Score=59.80 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 001980 775 SQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
+|.|+|++||||||+.+.|..-+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997655
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.40 E-value=0.0032 Score=60.97 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
.++|+|++|+|||||++.|+|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999985
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.36 E-value=0.003 Score=66.42 Aligned_cols=36 Identities=36% Similarity=0.575 Sum_probs=29.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCCccEEEE
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL 161 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~ 161 (987)
+.|.-+.|+|+.|||||||+++|+++++|..=-|.+
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 345568999999999999999999999886544444
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.34 E-value=0.042 Score=54.96 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.5
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 001980 131 VAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 131 ~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+.+.||+|||||+|++.|+..+
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6899999999999999999865
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.34 E-value=0.0019 Score=62.43 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
+|-.|.|+|++||||||+.+.|.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 477899999999999999999987653
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.32 E-value=0.0037 Score=59.55 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 001980 775 SQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl 796 (987)
+|+|||++|+|||||++.|+|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999875
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.31 E-value=0.00043 Score=67.60 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=28.6
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcc
Q 001980 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 762 vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~rl 796 (987)
.+++.++.+.+| .+.|+|+|||||||++.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 367788888776 8899999999999999998644
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.30 E-value=0.015 Score=59.09 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=24.6
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
+++..-+-+.||+|+|||+|++++.+-+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 44555689999999999999999998874
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.28 E-value=0.0027 Score=60.70 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=19.6
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 001980 776 QALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 776 vaIVG~sGsGKSTL~~lL~rl 796 (987)
|||+|++|+|||||++.|.|-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999864
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.27 E-value=0.0032 Score=60.68 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.4
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q 001980 131 VAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 131 ~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
++|+||||||||||++.|....+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999977653
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.25 E-value=0.0037 Score=63.62 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 001980 775 SQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl 796 (987)
+|+|+|++|+|||||++.|+|-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3899999999999999999984
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.24 E-value=0.0045 Score=59.67 Aligned_cols=27 Identities=26% Similarity=0.567 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
|+|-.++|+||.||||||+.+.|+-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 578889999999999999999998544
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.24 E-value=0.0036 Score=58.19 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 001980 775 SQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
.|.|+|++||||||+.+.|..-+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.24 E-value=0.004 Score=59.16 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 001980 775 SQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl 796 (987)
.|+|+|++|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999873
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.0025 Score=60.94 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhccC
Q 001980 774 QSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
=+|+|+|++++|||||++.|.+-.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 459999999999999999998854
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.21 E-value=0.0041 Score=60.13 Aligned_cols=26 Identities=42% Similarity=0.567 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+..+++|+||+||||||+.+.|+-.+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998655
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.17 E-value=0.0043 Score=61.04 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
++||.|++|||||||.+.|.-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999887655
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.14 E-value=0.0036 Score=59.53 Aligned_cols=24 Identities=13% Similarity=0.367 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc
Q 001980 773 GQSQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl 796 (987)
.-||+|||++|+|||||++.|.+=
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999764
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.13 E-value=0.0071 Score=60.90 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=33.3
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCccc
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIR 301 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~ 301 (987)
+..++++||.=. |.......+.+.+........+|++|++.+.+.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~ 175 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII 175 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSC
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccchh
Confidence 566999999854 677777777777766554556799999987653
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.13 E-value=0.0044 Score=57.40 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||.|||++|+|||||++.|.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998875
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.11 E-value=0.0044 Score=57.85 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||+|||++|+|||||++.+.+
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 599999999999999998865
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.05 E-value=0.0052 Score=58.66 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccC
Q 001980 774 QSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
..+.|+|||||||+||++.|.+-+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999887543
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.03 E-value=0.0052 Score=58.03 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.|+|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.97 E-value=0.0059 Score=58.79 Aligned_cols=27 Identities=22% Similarity=0.487 Sum_probs=24.6
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccC
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
|+|=++.|+|+.||||||+.+.|..-|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999999765
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.97 E-value=0.0018 Score=60.44 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 001980 775 SQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl 796 (987)
||+++|++|+|||||++.|.|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999874
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.94 E-value=0.0051 Score=59.39 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=19.4
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 001980 131 VAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 131 ~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
++|+||||||||||++.|.-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987654
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.88 E-value=0.0056 Score=56.72 Aligned_cols=22 Identities=14% Similarity=0.421 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 001980 775 SQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl 796 (987)
|++|||++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999998873
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.87 E-value=0.0053 Score=59.01 Aligned_cols=44 Identities=30% Similarity=0.576 Sum_probs=31.4
Q ss_pred EEEEcCCCCChHHHHHHHhccCC-------------CCCceEEECCccCCCCCHHHHhc
Q 001980 776 QALVGASGSGKSSVIALIERFYD-------------PTAGKVMIDGKDIRRLNLKSLRL 821 (987)
Q Consensus 776 vaIVG~sGsGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~i~l~~lR~ 821 (987)
|.|+|||||||+||++.|..-++ |..|+ .||+|..-++.+....
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f~~ 60 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKS 60 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTC--CBTTTEEECCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCC--cCCccceeccHHHHHH
Confidence 78999999999999998865432 23443 3777776666666543
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.86 E-value=0.0042 Score=60.92 Aligned_cols=43 Identities=30% Similarity=0.381 Sum_probs=32.4
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccC-CC-CCceEEECCccCCC
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFY-DP-TAGKVMIDGKDIRR 813 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~-~p-~~G~I~idG~di~~ 813 (987)
++|..|-|.|.||||||||.+.|..-+ +. .--.+.+||-+++.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHH
Confidence 568889999999999999999987543 21 12357899866553
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.84 E-value=0.054 Score=54.15 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.2
Q ss_pred EEEEcCCCCChHHHHHHHhccC
Q 001980 776 QALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 776 vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
+-+.||.|+|||+++++|.+.+
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6899999999999999999754
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.83 E-value=0.0061 Score=56.71 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcC
Q 001980 128 GKTVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 128 G~~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
|=.++|+|++|+|||||++.|+|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999975
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.78 E-value=0.0064 Score=56.19 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
+++|+|++|||||||++.+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988753
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.77 E-value=0.0066 Score=57.69 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
+|+|+|++|+|||||++.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.74 E-value=0.0064 Score=60.78 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+++|+|+.|||||||++.|+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998643
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.73 E-value=0.0054 Score=63.61 Aligned_cols=44 Identities=18% Similarity=0.384 Sum_probs=31.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCCCCchh
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT 190 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 190 (987)
++||.|++||||||+.+.|..++.-..+. .++..+++|.+..+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcCC-----------------CceEEEeeeeeECCc
Confidence 78999999999999999998766422110 246777777766544
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.69 E-value=0.0065 Score=57.90 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
.++|+|++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.68 E-value=0.0046 Score=59.21 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 001980 131 VAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 131 ~~ivG~sGsGKSTLl~~l~g~ 151 (987)
|||+|++++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.67 E-value=0.0086 Score=58.47 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=24.2
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcC
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
+++|+++.|.||+|||||||+.-++..
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999999999999777653
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.67 E-value=0.007 Score=58.53 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+-.+++|+||.||||||+.+.|+..|
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999999876
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.65 E-value=0.013 Score=55.07 Aligned_cols=28 Identities=39% Similarity=0.545 Sum_probs=22.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc-----cCCCCCc
Q 001980 775 SQALVGASGSGKSSVIALIER-----FYDPTAG 802 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r-----l~~p~~G 802 (987)
||+++|.+|+|||||++.+.+ -|.|+-|
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~ 36 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE 36 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCccee
Confidence 689999999999999987764 3456555
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.64 E-value=0.021 Score=55.59 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=17.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 001980 774 QSQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl 796 (987)
..+++|||+|+||||.+.=|...
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999886544443
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.64 E-value=0.007 Score=56.63 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 001980 131 VAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 131 ~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+.|+|++||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6889999999999999998765
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.64 E-value=0.0068 Score=59.08 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 001980 775 SQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl 796 (987)
+|+|||++|||||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999863
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.63 E-value=0.0073 Score=56.26 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
.++|||.+|||||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998774
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.62 E-value=0.0076 Score=57.09 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
+|+|+|.+|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.60 E-value=0.0061 Score=58.91 Aligned_cols=28 Identities=43% Similarity=0.612 Sum_probs=24.9
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
++++.++.|+||.||||||+.+.|+-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3577899999999999999999998765
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.57 E-value=0.0068 Score=57.21 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=20.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+.+.|+|++||||||+.+.|+-.+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999997544
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.53 E-value=0.0085 Score=56.72 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=21.6
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHc
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g 150 (987)
++-+++.++|++||||||+.+-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998753
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.48 E-value=0.0078 Score=58.01 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 001980 776 QALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 776 vaIVG~sGsGKSTL~~lL~rl 796 (987)
|.|+||||||||||++.|..-
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998654
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.45 E-value=0.0065 Score=57.64 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=20.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
-+++|||++|||||||++.+.+-.
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998754
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.44 E-value=0.0086 Score=55.35 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
+++|+|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999884
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.43 E-value=0.0062 Score=57.98 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 001980 131 VAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 131 ~~ivG~sGsGKSTLl~~l~g~ 151 (987)
|||+|++|+|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999885
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.43 E-value=0.0087 Score=57.70 Aligned_cols=30 Identities=33% Similarity=0.448 Sum_probs=24.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC
Q 001980 774 QSQALVGASGSGKSSVIALIERFYDPTAGKVMID 807 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~id 807 (987)
..|.|+|+.||||||+.+.|..-| |-+.|+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH----CCceEc
Confidence 578999999999999999998766 445554
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.43 E-value=0.0087 Score=57.01 Aligned_cols=21 Identities=14% Similarity=0.382 Sum_probs=19.8
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 001980 776 QALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 776 vaIVG~sGsGKSTL~~lL~rl 796 (987)
|||+|++.||||||++.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 999999999999999999864
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.40 E-value=0.0098 Score=64.47 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccCC
Q 001980 775 SQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
.|||+|++|+|||||+++|.|...
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 389999999999999999998653
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.38 E-value=0.0087 Score=58.25 Aligned_cols=22 Identities=23% Similarity=0.526 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
.++|+|++|||||||++.|.|.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999874
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.34 E-value=0.0095 Score=56.60 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.+.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997655
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.32 E-value=0.0089 Score=58.22 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccCC
Q 001980 775 SQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
.|.+||++||||||+++.|.+.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998765
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.31 E-value=0.0076 Score=57.90 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
++.|.||.||||||+.+.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997655
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.27 E-value=0.05 Score=52.71 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 773 GQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
...+.+|||+|+||||.+.=|...+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45689999999999998876665553
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.26 E-value=0.013 Score=54.76 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
+++|+|+.|||||||++.+.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 588999999999999999988543
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.25 E-value=0.011 Score=56.24 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 001980 131 VAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 131 ~~ivG~sGsGKSTLl~~l~g~ 151 (987)
+||+|+..+|||||++.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999874
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.24 E-value=0.0097 Score=55.77 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 001980 131 VAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 131 ~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+.++|++||||||+.+.|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998655
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.21 E-value=0.0083 Score=57.94 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=21.9
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
-+++|-|+.||||||+++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998765
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.19 E-value=0.011 Score=58.84 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 001980 775 SQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
.|+|+|+.|||||||++.|.+..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.18 E-value=0.011 Score=57.04 Aligned_cols=23 Identities=43% Similarity=0.648 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+++|+||.||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.13 E-value=0.011 Score=55.12 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 001980 775 SQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl 796 (987)
||+|||+.|+|||||++.|.+-
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999998763
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.12 E-value=0.013 Score=57.01 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=23.6
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhc
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~r 795 (987)
|++|+.+-|.|++||||||++.-++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 88999999999999999999876654
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.08 E-value=0.01 Score=55.42 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 001980 775 SQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
.+.|+|++||||||+.+.|...+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997765
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.08 E-value=0.011 Score=56.82 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 001980 775 SQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl 796 (987)
.|||+|.+||||||+++.|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5899999999999999998653
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.08 E-value=0.012 Score=56.15 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
++.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998765
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.04 E-value=0.011 Score=57.15 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=25.9
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC
Q 001980 773 GQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 807 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~id 807 (987)
-..+.|+||.||||||+++.|..-| |-+.|+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 3469999999999999999999877 545665
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.01 E-value=0.011 Score=56.36 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.0
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+++.|.|++||||||+++.|...+
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 367889999999999999998765
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.01 E-value=0.0092 Score=59.53 Aligned_cols=27 Identities=26% Similarity=0.517 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCC
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
++++++|-|+-||||||+++.|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 468999999999999999999998763
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.98 E-value=0.011 Score=56.76 Aligned_cols=21 Identities=43% Similarity=0.733 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.98 E-value=0.019 Score=53.71 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 001980 774 QSQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~r 795 (987)
-||+|+|++|+|||||++.+..
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4799999999999999998753
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.95 E-value=0.0077 Score=57.30 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.++|+|++++|||||++.|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999998864
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.85 E-value=0.013 Score=56.93 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+++++|.+|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.84 E-value=0.013 Score=57.63 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+++|-||+||||||+.+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57888999999999999998765
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.83 E-value=0.012 Score=55.42 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhccC
Q 001980 774 QSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
+.+.++|++||||||+.+.|..-+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 347799999999999999997654
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.83 E-value=0.011 Score=60.09 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=25.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 163 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g 163 (987)
.+.+.||+|||||||++.|++.+.. +-+.+++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence 5789999999999999999998753 2444544
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.81 E-value=0.026 Score=53.00 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=27.2
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 001980 762 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 762 vL~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~r 795 (987)
.++.-.+.| .|.=|.|+|+||+||||++..|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 466666666 788899999999999999977653
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.79 E-value=0.014 Score=55.06 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCChHHHHHHHhc
Q 001980 773 GQSQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~r 795 (987)
.=||.|||+.|||||||++.|.+
T Consensus 15 ~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 15 EHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999998876
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=93.70 E-value=0.024 Score=53.10 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=22.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc-----cCCCCCc
Q 001980 775 SQALVGASGSGKSSVIALIER-----FYDPTAG 802 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r-----l~~p~~G 802 (987)
||.+||.+|+|||||++.+.. -|.|+.|
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~ 38 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 38 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCCccc
Confidence 799999999999999998653 3455544
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.68 E-value=0.0058 Score=56.79 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
.++++|++|+|||||++.|+|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.66 E-value=0.016 Score=56.62 Aligned_cols=38 Identities=32% Similarity=0.297 Sum_probs=28.3
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCCCCC--ccEEEECC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFYDPN--AGHVLLDN 163 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~--~G~i~~~g 163 (987)
++|.++.+.|.||||||||.+.|...+... --.+.+||
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldg 61 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 61 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcc
Confidence 688899999999999999999987533211 12455665
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.61 E-value=0.014 Score=58.98 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.++|+|.+|+|||||++.|+|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 38899999999999999999964
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.61 E-value=0.015 Score=55.11 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.+.|+||.||||||..+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997654
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.58 E-value=0.016 Score=54.95 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 001980 775 SQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
+|.|+|+.||||||+.+.|.--|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999997765
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.57 E-value=0.027 Score=52.70 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++++|.+|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999987765
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.57 E-value=0.014 Score=56.19 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccC
Q 001980 774 QSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
-.|+|-|..||||||+++.|.+.+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999998865
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.54 E-value=0.011 Score=62.07 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccCCC
Q 001980 773 GQSQALVGASGSGKSSVIALIERFYDP 799 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl~~p 799 (987)
.-+|||+|+.|||||||+..|.+.+..
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 346999999999999999999876653
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.54 E-value=0.019 Score=54.13 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++|+|++|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 488999999999999998875
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.52 E-value=0.017 Score=56.31 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+|.+++|-|+-||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999988654
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.50 E-value=0.016 Score=54.36 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||.+||.+|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 499999999999999998764
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.49 E-value=0.017 Score=54.96 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 001980 775 SQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
+|.|+|+.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999876
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.49 E-value=0.013 Score=56.07 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 001980 775 SQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
++.|.||.||||||+.+.|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998776
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.45 E-value=0.018 Score=56.21 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
++|.+++|-|+-||||||+.+.|...+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999987654
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.45 E-value=0.017 Score=56.67 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+++|.||+||||||+.+.|+-.|
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 88999999999999999998765
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.41 E-value=0.013 Score=56.35 Aligned_cols=117 Identities=19% Similarity=0.204 Sum_probs=63.5
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhccCCCCCC
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGAT 849 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~~~~~~~s 849 (987)
++.+..|.|+||.||||||+.+.|..-| |-..|+--+ -+|..+ ...+ .....+.+.+.- ....+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~-------llr~~~---~~~~-~~~~~~~~~~~~-~~~~~ 68 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGD-------LLRAEV---SSGS-ARGKMLSEIMEK-GQLVP 68 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHH-------HHHHHH---HHTC-HHHHHHHHHHTT-TCCCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh----CCeeEeccH-------HHHHHH---HHhH-hhhhhhHHHHhh-ccCCc
Confidence 3567889999999999999999998866 445554221 123211 1111 111233444432 23356
Q ss_pred HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeCC
Q 001980 850 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 910 (987)
Q Consensus 850 d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlLDEa 910 (987)
++-+...++.. +...+...+..+-+ .+..-..|--.+.+.+.....++.+|.+
T Consensus 69 ~~~~~~~~~~~-----l~~~~~~~~g~ild---g~pr~~~qa~~~~~~~~~~~~~~~~~~~ 121 (194)
T d3adka_ 69 LETVLDMLRDA-----MVAKVDTSKGFLID---GYPREVKQGEEFERKIGQPTLLLYVDAG 121 (194)
T ss_dssp HHHHHHHHHHH-----HHTTTTTCSCEEEE---SCCSSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred hheeeeehhhh-----hhhcccccccceee---eccchhHHHHHHHHHhCCccchhccccc
Confidence 66555554432 11111111111222 2566677777788877766666667654
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.41 E-value=0.014 Score=54.64 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 001980 775 SQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
++.++|++||||||+.++|..-+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 37788999999999999998765
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.41 E-value=0.018 Score=54.69 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.+.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997654
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.40 E-value=0.017 Score=56.21 Aligned_cols=20 Identities=45% Similarity=0.802 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHH
Q 001980 130 TVAVVGGSGSGKSTVVSLIE 149 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~ 149 (987)
++||+|+.||||||+++.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.37 E-value=0.018 Score=55.27 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 001980 775 SQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
+|.|+||.||||||.++.|..-|
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.34 E-value=0.018 Score=54.19 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
+++|+|..|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999999874
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.34 E-value=0.014 Score=55.46 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccCC
Q 001980 775 SQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
.+.|.|.+||||||+++.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999988775
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.31 E-value=0.014 Score=58.02 Aligned_cols=27 Identities=15% Similarity=0.391 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
++..|+|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998774
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.31 E-value=0.018 Score=55.98 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 001980 775 SQALVGASGSGKSSVIALIE 794 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~ 794 (987)
.|||+|..||||||+++.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999875
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.31 E-value=0.021 Score=52.61 Aligned_cols=30 Identities=20% Similarity=0.148 Sum_probs=26.4
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIERFYDP 154 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~ 154 (987)
.++|.++++.|+-|||||||.|.++.-+-.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 468999999999999999999999876643
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.26 E-value=0.019 Score=54.11 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||++||++|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 589999999999999998764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.23 E-value=0.032 Score=52.14 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||.+||.+|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999987763
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.17 E-value=0.019 Score=55.73 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 001980 774 QSQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~r 795 (987)
..|+|+|+.|+|||||++.|.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 3699999999999999999876
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.16 E-value=0.033 Score=52.13 Aligned_cols=30 Identities=37% Similarity=0.583 Sum_probs=22.6
Q ss_pred EEEEEcCCCccHHHHHHHHHc-----CCCCCccEE
Q 001980 130 TVAVVGGSGSGKSTVVSLIER-----FYDPNAGHV 159 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g-----~~~~~~G~i 159 (987)
+++|+|.+|+|||||++-+.+ .+.|+.|..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~ 41 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS 41 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCcccccc
Confidence 589999999999999987654 234555543
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.13 E-value=0.022 Score=56.55 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=23.0
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHH
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIE 149 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~ 149 (987)
+++|+++.|.||+|||||||+.-++
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999999997665
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.10 E-value=0.021 Score=55.49 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
.|+|+|+.|||||||++.+.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.04 E-value=0.02 Score=53.86 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||++||+.|+|||||++.|.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998754
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.04 E-value=0.021 Score=53.18 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||++||.+|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999986663
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.03 E-value=0.022 Score=54.61 Aligned_cols=24 Identities=42% Similarity=0.666 Sum_probs=21.3
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
=.++|+||.||||||+.+.|+-.+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999999998765
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.02 E-value=0.021 Score=56.03 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccCC
Q 001980 775 SQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
+|+|-||+||||||+.++|..-|.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987664
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.01 E-value=0.021 Score=54.01 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 001980 775 SQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
++.|+|+.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998765
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.96 E-value=0.024 Score=55.54 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCCCC
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFYDP 154 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~~~ 154 (987)
+|.+++|-|+-||||||++++|.-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 7999999999999999999999876643
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.94 E-value=0.1 Score=51.64 Aligned_cols=44 Identities=20% Similarity=0.165 Sum_probs=33.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh
Q 001980 902 PAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR 946 (987)
Q Consensus 902 p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~ 946 (987)
.+|+|+||+=. |+.+....+.+.+++...++.+|++|++++-+.
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~ 159 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 159 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCccccC
Confidence 46999999954 777777777777765556678888999987653
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.94 E-value=0.023 Score=53.85 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.+.|+||.||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47799999999999999998765
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.93 E-value=0.014 Score=59.52 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccCC
Q 001980 775 SQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
.|||+|.|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 699999999999999999887654
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.85 E-value=0.023 Score=54.01 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||++||.+|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.81 E-value=0.04 Score=51.57 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||.|||.+|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999987643
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.81 E-value=0.024 Score=53.03 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++++|++|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 389999999999999997764
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=92.80 E-value=0.27 Score=47.23 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=20.1
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
...+++++||+|+||||.+-=|+..+
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999998876665444
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.73 E-value=0.024 Score=52.93 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||++||++|+|||||++.+..
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999988764
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.68 E-value=0.04 Score=51.68 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=23.9
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 001980 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 763 L~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~r 795 (987)
|+.--+ --.|.=|.|+|+||+||||++..|..
T Consensus 5 lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 5 MHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEE-EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 444444 33577899999999999999877653
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=92.63 E-value=0.027 Score=52.41 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
.++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999997754
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.62 E-value=0.02 Score=58.41 Aligned_cols=22 Identities=32% Similarity=0.250 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 001980 775 SQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl 796 (987)
.|||.|++|||||||...|...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 4899999999999999877543
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=92.58 E-value=0.026 Score=52.44 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||.++|++|+|||||++.|..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999997753
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.57 E-value=0.028 Score=60.64 Aligned_cols=28 Identities=36% Similarity=0.602 Sum_probs=23.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCcc
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYDPNAG 157 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~~~~G 157 (987)
.++|+|++|+|||||++.|.|.-.-..|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 3899999999999999999996543333
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=92.57 E-value=0.029 Score=60.61 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=24.4
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccCCC
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFYDP 799 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p 799 (987)
.++-.|-|.|||||||||.+.++++..+.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence 35667999999999999999999886543
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.57 E-value=0.026 Score=53.12 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
|+++||+.|+|||||++.+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999997754
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.52 E-value=0.05 Score=51.01 Aligned_cols=33 Identities=24% Similarity=0.216 Sum_probs=26.1
Q ss_pred ceeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 001980 117 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 117 ~l~~i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g 150 (987)
.++..-+.+ .|.-+.|.|+||+|||||...+..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 355555555 788999999999999999977653
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.51 E-value=0.035 Score=51.66 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++++|++|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999988765
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.50 E-value=0.024 Score=54.92 Aligned_cols=26 Identities=42% Similarity=0.810 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
++.+++++||+|+||||.+-=|+..+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999875555544
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.49 E-value=0.028 Score=52.41 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||.+||.+|+|||||++.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999987754
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.47 E-value=0.022 Score=56.60 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=22.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYDPN 155 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~~~ 155 (987)
.+.+.||+|+||||++++|+..+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCC
Confidence 36799999999999999999877654
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.47 E-value=0.026 Score=56.55 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
.+.+.||+|+||||++++|+..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999998764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.44 E-value=0.05 Score=50.40 Aligned_cols=21 Identities=14% Similarity=0.374 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++|+|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.43 E-value=0.017 Score=60.53 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCC
Q 001980 128 GKTVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 128 G~~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
.-+++|+|+.|||||||+..|.+.+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 44799999999999999999986553
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.38 E-value=0.032 Score=52.17 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 001980 775 SQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
||+++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 68999999999999999887653
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.35 E-value=0.032 Score=53.08 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||+|||.+|+|||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 489999999999999988764
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.34 E-value=0.031 Score=52.88 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 001980 775 SQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
++.|.|+.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998766
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.33 E-value=0.031 Score=52.66 Aligned_cols=21 Identities=43% Similarity=0.710 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++++|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997765
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.33 E-value=0.036 Score=54.60 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.8
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHH
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLI 148 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l 148 (987)
+++|+++.|.|++|+|||||+.-+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 799999999999999999998543
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.32 E-value=0.041 Score=51.09 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.2
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999986663
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.32 E-value=0.032 Score=54.43 Aligned_cols=28 Identities=25% Similarity=0.232 Sum_probs=24.6
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
++|-.|+|.|+-||||||++++|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999999987654
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.25 E-value=0.028 Score=52.86 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
.++++|+.|+|||||++.+.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998663
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.23 E-value=0.034 Score=55.45 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.3
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHH
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIE 149 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~ 149 (987)
+++|+++.|.||+|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999999986443
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.22 E-value=0.03 Score=52.14 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||.+||.+|+|||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999997754
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.21 E-value=0.031 Score=52.47 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||.+||.+|+|||||++.+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 589999999999999997763
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.14 E-value=0.04 Score=51.27 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.12 E-value=0.017 Score=58.88 Aligned_cols=23 Identities=35% Similarity=0.679 Sum_probs=17.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
++||.|+|||||||+.+.|.-.+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 79999999999999999887654
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=92.12 E-value=0.048 Score=50.80 Aligned_cols=32 Identities=25% Similarity=0.248 Sum_probs=24.0
Q ss_pred eeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhc
Q 001980 763 FKDFNLRIRAGQSQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 763 L~~vsl~I~~Ge~vaIVG~sGsGKSTL~~lL~r 795 (987)
|+. ++-.-.|.=|.|+|+||+||||++..|.+
T Consensus 6 ~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 444 33345688899999999999999866553
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.11 E-value=0.032 Score=54.26 Aligned_cols=21 Identities=52% Similarity=0.724 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
++||+|..||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999998864
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.09 E-value=0.051 Score=50.92 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 001980 775 SQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
||.++|.+|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 68999999999999999887644
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.06 E-value=0.034 Score=55.52 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=23.6
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHc
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++|+++.|.|++|||||||...++-
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999999977763
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.06 E-value=0.033 Score=55.03 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
++||+|+..||||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999874
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.05 E-value=0.06 Score=50.15 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++++|+.|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999988774
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.01 E-value=0.038 Score=54.82 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=23.4
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHc
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++|+++.|.|++|+|||||+.-++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 79999999999999999999876653
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.00 E-value=0.033 Score=55.05 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 001980 775 SQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl 796 (987)
.|||+|+..||||||++.|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 3999999999999999999874
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.98 E-value=0.033 Score=52.15 Aligned_cols=21 Identities=24% Similarity=0.545 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||.|+|.+|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999998775
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.95 E-value=0.036 Score=52.00 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
+++|+|++|+|||||++.+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4889999999999999987643
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.94 E-value=0.036 Score=52.08 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||.+||++|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999977654
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=91.94 E-value=0.036 Score=53.89 Aligned_cols=21 Identities=43% Similarity=0.517 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
.|||+|..||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 589999999999999998753
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.92 E-value=0.042 Score=54.41 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.8
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHh
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIE 794 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~ 794 (987)
+++|+.+-|.|++|||||||+.-+.
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999987554
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.87 E-value=0.049 Score=50.66 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++|+|..|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997764
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.87 E-value=0.067 Score=49.68 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999988764
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.87 E-value=0.037 Score=52.53 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++++|.+|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999987764
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.85 E-value=0.054 Score=50.98 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||+++|.+|+|||||++-+..
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999986654
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.84 E-value=0.045 Score=50.82 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
+++++|++|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999977653
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.82 E-value=0.038 Score=55.74 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 127 AGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 127 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.+..+.|.||.|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 56789999999999999999876543
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.82 E-value=0.038 Score=51.28 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||.++|.+|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987753
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.81 E-value=0.033 Score=57.88 Aligned_cols=26 Identities=19% Similarity=0.517 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCC
Q 001980 128 GKTVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 128 G~~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
+.-+.++||+|||||.|.|+|+..+.
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHhhccc
Confidence 34556899999999999999998753
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.81 E-value=0.1 Score=50.49 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=29.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh
Q 001980 902 PAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTI 945 (987)
Q Consensus 902 p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti 945 (987)
.+|+|+||+= .|..++...+.+.|++-.++...|++|++++.+
T Consensus 109 ~kviIide~d-~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~l 151 (207)
T d1a5ta2 109 AKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPERL 151 (207)
T ss_dssp CEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred cceEEechhh-hhhhhhhHHHHHHHHhhcccceeeeeecChhhh
Confidence 6899999863 344556666666666544455567889998644
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.78 E-value=0.038 Score=51.45 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||+|||.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999988763
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.78 E-value=0.036 Score=51.39 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||.+||..|+|||||++.+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999998764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.77 E-value=0.031 Score=54.24 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhccCC
Q 001980 774 QSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
..+++|||+|+||||.+.=|...+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999998766666554
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.77 E-value=0.041 Score=51.38 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+++++|++|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 47899999999999999998754
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.77 E-value=0.049 Score=50.62 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
+++|+|+.|+|||||++.+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999888653
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.75 E-value=0.04 Score=52.29 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++|+|+.|+|||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 388999999999999988875
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=91.73 E-value=0.029 Score=53.13 Aligned_cols=21 Identities=19% Similarity=0.510 Sum_probs=18.6
Q ss_pred cEEEEEcCCCCChHHHHHHHh
Q 001980 774 QSQALVGASGSGKSSVIALIE 794 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~ 794 (987)
=||.+||++|+|||||++.|.
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999998774
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.70 E-value=0.037 Score=54.68 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.+.|.||+|+||||++++++..+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 37899999999999999998865
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.63 E-value=0.068 Score=49.99 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.0
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++++|++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 388999999999999976654
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=91.58 E-value=0.042 Score=53.66 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccCC
Q 001980 775 SQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
.|+|-||.||||||+.+.|..-|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999987664
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.57 E-value=0.057 Score=50.57 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
+++++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCcC
Confidence 478999999999999999987543
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.56 E-value=0.043 Score=52.02 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||.|||.+|+|||||++.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999987653
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.54 E-value=0.036 Score=57.60 Aligned_cols=36 Identities=11% Similarity=0.397 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccC
Q 001980 774 QSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI 811 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di 811 (987)
.-+.++||||+|||+|+++|.+.... --+.+|+-.+
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~s~~ 85 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKF 85 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGGG
T ss_pred ceEEEECCCCCCHHHHHHHHhhcccc--chhccccccc
Confidence 44689999999999999999997542 2466665443
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.51 E-value=0.042 Score=51.10 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||.|||.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987764
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.49 E-value=0.079 Score=49.80 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
.++++|..|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999986665
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=91.46 E-value=0.045 Score=52.32 Aligned_cols=24 Identities=38% Similarity=0.650 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhccC
Q 001980 774 QSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
=++.|+|+.||||||+.+.|..-|
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999998866
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.41 E-value=0.078 Score=49.33 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 688999999999999988653
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.40 E-value=0.041 Score=59.97 Aligned_cols=45 Identities=16% Similarity=0.465 Sum_probs=32.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEECCEeCCCCCHHHHhcceEEEcCCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEP 185 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~ 185 (987)
-+.++||+|||||-|++.|++++.. --+.+|+..++ .+|||..+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V--PFv~~daT~fT---------eaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFT---------EVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGGGGC-------------CCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC--CEEEeecceee---------ecceeecch
Confidence 4679999999999999999998742 25666665443 489998885
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.39 E-value=0.053 Score=50.62 Aligned_cols=21 Identities=24% Similarity=0.602 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++|+|+.|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998775
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.39 E-value=0.08 Score=49.32 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++++|..|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997765
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.38 E-value=0.075 Score=49.50 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||.+||.+|+|||||++.+..
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999997764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.38 E-value=0.049 Score=52.91 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
+|..|+|-|.-||||||+++.|...++
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.38 E-value=0.04 Score=53.38 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 001980 775 SQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl 796 (987)
.|||+|+-+||||||+..|+..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 4899999999999999999743
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.33 E-value=0.044 Score=51.44 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||.|||..|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999987654
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.32 E-value=0.057 Score=49.57 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=26.8
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHhccCCC
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIERFYDP 799 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p 799 (987)
.+||..|.+.|+=||||||+++.+.+-+-.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 468999999999999999999999987744
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.31 E-value=0.043 Score=51.65 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhc
Q 001980 774 QSQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~r 795 (987)
-||.|||.+|+|||||++.+..
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3799999999999999987664
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.26 E-value=0.048 Score=50.77 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 001980 775 SQALVGASGSGKSSVIALIE 794 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~ 794 (987)
||.|||.+|+|||||++-+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~ 24 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYC 24 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999999765
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.25 E-value=0.061 Score=49.94 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999987765
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.25 E-value=0.048 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+++|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998654
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=91.17 E-value=0.043 Score=54.46 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.4
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q 001980 131 VAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 131 ~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
+.+.||+|+||||+++++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999998653
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.17 E-value=0.036 Score=51.94 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 001980 775 SQALVGASGSGKSSVIALIE 794 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~ 794 (987)
||++||.+|+|||||++.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~ 24 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHL 24 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 69999999999999987654
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.13 E-value=0.034 Score=52.24 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=9.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||.+||..|+|||||++.|.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999986653
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.12 E-value=0.055 Score=51.90 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 001980 131 VAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 131 ~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+||+|...+|||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999864
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.11 E-value=0.047 Score=55.05 Aligned_cols=31 Identities=32% Similarity=0.366 Sum_probs=25.7
Q ss_pred EEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 001980 776 QALVGASGSGKSSVIALIERFYDPTAGKVMIDG 808 (987)
Q Consensus 776 vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG 808 (987)
+-++||+|||||||++.|.+-+. .+-+.+++
T Consensus 35 ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~ 65 (273)
T d1gvnb_ 35 FLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 65 (273)
T ss_dssp EEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh--cceEEEec
Confidence 78999999999999999999764 34566665
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.11 E-value=0.046 Score=51.21 Aligned_cols=21 Identities=24% Similarity=0.472 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||+++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 499999999999999997763
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.10 E-value=0.049 Score=55.39 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999877543
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.10 E-value=0.05 Score=50.38 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++++|..|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987763
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.07 E-value=0.052 Score=51.27 Aligned_cols=29 Identities=17% Similarity=0.392 Sum_probs=23.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCCCceEEEC
Q 001980 775 SQALVGASGSGKSSVIALIERFYDPTAGKVMID 807 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~id 807 (987)
++.|.|+.||||||+.+.|.--| |-..|+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~ 32 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLA 32 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCceEe
Confidence 57899999999999999998765 445554
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.03 E-value=0.052 Score=50.59 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 001980 775 SQALVGASGSGKSSVIALIE 794 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~ 794 (987)
||++||..|+|||||++-+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~ 24 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 78999999999999998655
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.90 E-value=0.049 Score=53.75 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 001980 131 VAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 131 ~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
+.+.||+|+||||++++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.87 E-value=0.052 Score=51.05 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||.+||..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.86 E-value=0.056 Score=50.44 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 001980 775 SQALVGASGSGKSSVIALIE 794 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~ 794 (987)
||.+||..|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999998877
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.83 E-value=0.055 Score=54.39 Aligned_cols=29 Identities=17% Similarity=0.396 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCCCc
Q 001980 128 GKTVAVVGGSGSGKSTVVSLIERFYDPNA 156 (987)
Q Consensus 128 G~~~~ivG~sGsGKSTLl~~l~g~~~~~~ 156 (987)
...+.|.||.|+||||+++.++..+....
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~ 71 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKT 71 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhccc
Confidence 35788999999999999999998875443
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.81 E-value=0.057 Score=52.72 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccCCC
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFYDP 799 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~~p 799 (987)
+|..|+|-|.-||||||++++|...++.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 6899999999999999999999876653
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=90.80 E-value=0.064 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=21.3
Q ss_pred EeCCcEEEEEcCCCCChHHHHHH
Q 001980 770 IRAGQSQALVGASGSGKSSVIAL 792 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~l 792 (987)
+++|+.+-|.|++|+||||++.-
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~ 45 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQ 45 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHH
Confidence 89999999999999999999853
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.77 E-value=0.058 Score=53.69 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=23.1
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHh
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIE 794 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~ 794 (987)
|++|+.+-|.|++||||||+..-+.
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHH
Confidence 8899999999999999999987665
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.72 E-value=0.057 Score=51.10 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++|+|.+|+|||||++.+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999977654
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.71 E-value=0.068 Score=50.16 Aligned_cols=21 Identities=19% Similarity=0.488 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++|+|++|+|||||++.+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999987765
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=90.67 E-value=0.045 Score=53.20 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=18.7
Q ss_pred eCCcEEEEEcCCCccHHHHHHHHHc
Q 001980 126 PAGKTVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 126 ~~G~~~~ivG~sGsGKSTLl~~l~g 150 (987)
.+..++++|||+|+||||.+-=|+-
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3445789999999999997644443
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.66 E-value=0.056 Score=50.39 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||+|||+.|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999986644
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=90.66 E-value=0.052 Score=54.77 Aligned_cols=49 Identities=24% Similarity=0.251 Sum_probs=31.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC--CCCccEEEECCEeCCCCCHHHHhcceE
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY--DPNAGHVLLDNVDIKTLQLRWLRDQIG 179 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~--~~~~G~i~~~g~~~~~~~~~~~~~~i~ 179 (987)
-++|+|+.|||||||+..|+..- ....|++. +|..+.++.+++..+++.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~t 54 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTT 54 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSC
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCCe
Confidence 37899999999999999885322 12345443 455555666665555443
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.63 E-value=0.075 Score=49.91 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998775
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.61 E-value=0.066 Score=53.26 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.8
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHH
Q 001980 770 IRAGQSQALVGASGSGKSSVIALI 793 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL 793 (987)
+++|+.+-|.|++||||||+..-+
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHH
Confidence 899999999999999999997644
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.61 E-value=0.095 Score=49.32 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=17.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999975543
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.58 E-value=0.076 Score=49.40 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=18.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++++|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999986654
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.54 E-value=0.1 Score=48.75 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=21.9
Q ss_pred EeCCcEEEEEcCCCccHHHHHHHHHc
Q 001980 125 FPAGKTVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 125 i~~G~~~~ivG~sGsGKSTLl~~l~g 150 (987)
--.|.-+.|.|+||+|||||.-.+..
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 34688899999999999999877653
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.52 E-value=0.057 Score=54.73 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=27.6
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhccCC
Q 001980 768 LRIRAGQSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 768 l~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
+.|-+||+++|+|++|+|||||+..+.+-..
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 4788999999999999999999999988543
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=90.50 E-value=0.04 Score=52.09 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
.++++|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999998754
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=90.49 E-value=0.068 Score=55.58 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCChHHHHHHHhccC
Q 001980 773 GQSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
.-+|||.|+-|||||||+..|.+.+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 3469999999999999999988754
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.47 E-value=0.058 Score=50.51 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999987664
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.45 E-value=0.068 Score=52.84 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.8
Q ss_pred EeCCcEEEEEcCCCCChHHHHHHHh
Q 001980 770 IRAGQSQALVGASGSGKSSVIALIE 794 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~~lL~ 794 (987)
+++|+.+-|.|++|+||||++.-+.
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999999986654
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.44 E-value=0.063 Score=54.44 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=27.3
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 122 SIFFPAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 122 ~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
=+.|-+|++.+|+|++|+|||||+..|..-.
T Consensus 37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999999988644
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.43 E-value=0.08 Score=49.28 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++++|..|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999988773
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.41 E-value=0.056 Score=53.99 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
-+.+.||+|||||++++.|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 47899999999999999999764
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.39 E-value=0.096 Score=49.31 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 789999999999999976543
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.37 E-value=0.06 Score=50.36 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999997764
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.37 E-value=0.066 Score=52.50 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=23.9
Q ss_pred EEEEEcCCCccHHHHHHHH-HcCCCCCcc
Q 001980 130 TVAVVGGSGSGKSTVVSLI-ERFYDPNAG 157 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l-~g~~~~~~G 157 (987)
++.++|.+|+|||||++-+ .+...|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 6889999999999999765 667778877
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.35 E-value=0.062 Score=51.42 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||+|||+.|+|||||++-+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhh
Confidence 389999999999999997663
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.16 E-value=0.082 Score=50.51 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=18.2
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 001980 131 VAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 131 ~~ivG~sGsGKSTLl~~l~g 150 (987)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 89999999999999997764
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.14 E-value=0.045 Score=51.31 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=9.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++|+|..|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999986654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.95 E-value=0.048 Score=50.98 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=17.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++++|++|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987654
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.92 E-value=0.071 Score=53.92 Aligned_cols=137 Identities=16% Similarity=0.120 Sum_probs=60.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc---cCCCCCceEEECCccCCCCCHHHHhcccEEEccccccccccHHHHhc--cCCCCCC
Q 001980 775 SQALVGASGSGKSSVIALIER---FYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIA--YGKEGAT 849 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r---l~~p~~G~I~idG~di~~i~l~~lR~~i~~VpQdp~lF~gTIreNL~--~~~~~~s 849 (987)
.|||||+.|||||||+..|+- ..+ .-|++. +|..+.+...++..+++++-+.-..+--..-+-||. +|..+..
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~ 85 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT 85 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccc-ccccee-cCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhH
Confidence 479999999999999988852 332 234442 444445555555555565533322111111233543 3333333
Q ss_pred HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEE---eCCCCCCCHHHHHHHHHHH
Q 001980 850 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLL---DEATSALDAESECVLQEAL 926 (987)
Q Consensus 850 d~ei~~al~~a~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAllr~p~ILlL---DEaTS~LD~~te~~I~~~l 926 (987)
.+...+++.+...=++-.-.+| .-.+-++..-.|+.. +-|.|+++ |-+=+.. ..+.+.|
T Consensus 86 -~e~~~~l~~~D~avlVvda~~G-----------v~~~T~~~w~~a~~~-~lP~i~fINKmDr~~ad~-----~~~l~ei 147 (276)
T d2bv3a2 86 -IEVERSMRVLDGAIVVFDSSQG-----------VEPQSETVWRQAEKY-KVPRIAFANKMDKTGADL-----WLVIRTM 147 (276)
T ss_dssp -TTHHHHHHHCCEEEEEEETTTS-----------SCHHHHHHHHHHHTT-TCCEEEEEECTTSTTCCH-----HHHHHHH
T ss_pred -HHHHHHHHhhhheEEeccccCC-----------cchhHHHHHHHHHHc-CCCEEEEEeccccccccc-----chhHHHH
Confidence 3556666666543333222222 233444444444422 45666663 5544333 3455556
Q ss_pred HHHcC
Q 001980 927 ERLMR 931 (987)
Q Consensus 927 ~~~~~ 931 (987)
++.+.
T Consensus 148 ~~~l~ 152 (276)
T d2bv3a2 148 QERLG 152 (276)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 66553
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.91 E-value=0.072 Score=49.47 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||.+||.+|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999987653
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=89.89 E-value=0.043 Score=53.18 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=18.8
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.++++|||+|+||||.+-=|+-.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999775455444
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.88 E-value=0.057 Score=54.43 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=30.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEECCE
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG-HVLLDNV 164 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G-~i~~~g~ 164 (987)
=+++|.++-|.||+|||||||+-.++....-..| -+++|.+
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE 91 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 91 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 4689999999999999999998766655443333 4566654
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.86 E-value=0.073 Score=50.42 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 001980 775 SQALVGASGSGKSSVIALIE 794 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~ 794 (987)
||.|||.+|+|||||++.+.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 59999999999999998765
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.85 E-value=0.067 Score=55.04 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 001980 775 SQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
.+++||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999954
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.79 E-value=0.072 Score=53.62 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=32.8
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCC-CCCceEEECCcc
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYD-PTAGKVMIDGKD 810 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~-p~~G~I~idG~d 810 (987)
=|++|..+-|.|++|||||||+..+..... +..-.++||...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence 588999999999999999999876666553 333347888764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=89.78 E-value=0.05 Score=50.97 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.+.++|++|+|||||++.+.+-.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999987544
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=89.65 E-value=0.076 Score=55.21 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcC
Q 001980 128 GKTVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 128 G~~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
.-+++|.|+.|+|||||+..|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHH
Confidence 347999999999999999988764
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.59 E-value=0.077 Score=53.33 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCChHHHHHHHhccC
Q 001980 772 AGQSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
.+..+.|.|+.|+|||||++.+.+-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 46789999999999999998776543
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=89.56 E-value=0.063 Score=50.21 Aligned_cols=21 Identities=14% Similarity=0.398 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
||.++|+.|+|||||++.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998764
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.55 E-value=0.061 Score=54.81 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhccC-----------CCCCceEEECC
Q 001980 774 QSQALVGASGSGKSSVIALIERFY-----------DPTAGKVMIDG 808 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~-----------~p~~G~I~idG 808 (987)
=+|||||-.-+|||||+++|.+-- +|.-|.+.+..
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d 48 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEeccc
Confidence 379999999999999999999532 45556665543
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.48 E-value=0.11 Score=49.15 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=25.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCCCce
Q 001980 775 SQALVGASGSGKSSVIALIERFYDPTAGK 803 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~p~~G~ 803 (987)
|+.++|..|+|||||++-+....-|+.|-
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccE
Confidence 68999999999999998887666777774
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.45 E-value=0.084 Score=49.12 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=18.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++|+|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999986543
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.43 E-value=0.079 Score=54.72 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEec
Q 001980 887 GQKQRIAIARAVLKNPA--ILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH 940 (987)
Q Consensus 887 GQrQrlaLARAllr~p~--ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaH 940 (987)
.+.+--.+++..++++. ||+...++..........+.+.+.. ...+|++++++
T Consensus 153 ~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~-~~~r~i~Vitk 207 (306)
T d1jwyb_ 153 IEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP-EGKRTIGVITK 207 (306)
T ss_dssp SHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS-SCSSEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCc-CCCeEEEEEec
Confidence 34456678888888886 6666676666655554444444432 13477777776
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.40 E-value=0.085 Score=48.91 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=18.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
++++||.+|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999987654
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.28 E-value=0.081 Score=54.99 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 001980 775 SQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl 796 (987)
+|||||..-+|||||+++|.|.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999999875
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=89.24 E-value=0.14 Score=47.62 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=22.6
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHc
Q 001980 123 IFFPAGKTVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 123 l~i~~G~~~~ivG~sGsGKSTLl~~l~g 150 (987)
+-.-.|.-+.|.|+||+|||||.-.+..
T Consensus 10 ~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 10 LVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3345788999999999999999866553
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.01 E-value=0.087 Score=51.55 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=29.4
Q ss_pred CCCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcc
Q 001980 256 NPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300 (987)
Q Consensus 256 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~ 300 (987)
+..++++||.- .+.......+...+.........++++++.+-+
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 35799999965 344445556666666555566778888887655
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.93 E-value=0.089 Score=49.78 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=18.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999977653
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.93 E-value=0.1 Score=50.27 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
-+||+|...+|||||+..|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 479999999999999999998654
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.92 E-value=0.087 Score=52.97 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
-+.+.||+|||||+|++.++...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 37899999999999999999975
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=88.84 E-value=0.1 Score=49.93 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=20.3
Q ss_pred EEEEcCCCCChHHHHHHHhccC
Q 001980 776 QALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 776 vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
|||+|.-.+|||||++.|.+..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 8999999999999999998754
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=88.81 E-value=0.094 Score=51.90 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 001980 775 SQALVGASGSGKSSVIALIER 795 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~r 795 (987)
.|||+|.-||||||+++.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.80 E-value=0.098 Score=50.33 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccCC
Q 001980 775 SQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
.|+|-|.-||||||+++.|...++
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999987554
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.80 E-value=0.091 Score=50.00 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 001980 775 SQALVGASGSGKSSVIALIE 794 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~ 794 (987)
||+++|.+|+|||||++-+.
T Consensus 5 KvvllG~~~vGKTSli~r~~ 24 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYT 24 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 69999999999999997664
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.80 E-value=0.097 Score=49.90 Aligned_cols=28 Identities=39% Similarity=0.544 Sum_probs=22.9
Q ss_pred EEEEEcCCCCChHHHHHHHh--ccCCCCCc
Q 001980 775 SQALVGASGSGKSSVIALIE--RFYDPTAG 802 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~--rl~~p~~G 802 (987)
|+.|+|.+|+|||||++-+- .-+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 78999999999999998772 23457888
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.79 E-value=0.087 Score=51.78 Aligned_cols=45 Identities=27% Similarity=0.335 Sum_probs=30.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR 946 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti~ 946 (987)
++.|+++||.= .+-......+...+.+....+.+|+++++.+.+.
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~ 153 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKII 153 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred CceEEeehhhh-hcchhHHHHHhhhcccCCcceEEEeccCChhhch
Confidence 67899999972 3344455556666666556677888888887653
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=88.77 E-value=0.12 Score=51.71 Aligned_cols=28 Identities=21% Similarity=0.476 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhccCCCCC
Q 001980 774 QSQALVGASGSGKSSVIALIERFYDPTA 801 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~~p~~ 801 (987)
..+.|.||+|+||||+++.|.+.+....
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~~ 71 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDKT 71 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhccc
Confidence 4689999999999999999998876433
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=88.71 E-value=0.092 Score=51.98 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHcC
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
.++||.|+-||||||+.+.|...
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999999653
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.67 E-value=0.09 Score=53.32 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhccC
Q 001980 774 QSQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
-.|+|+|+.++|||||++.|++-.
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 478999999999999999999854
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=88.65 E-value=0.088 Score=51.98 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=25.7
Q ss_pred EEEEcCCCCChHHHHHHHhccCCCCCceEEECCcc
Q 001980 776 QALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD 810 (987)
Q Consensus 776 vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~d 810 (987)
+-+.||+|+||||++++|..-+.... +.++|.+
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~~--~~~~~~~ 70 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTNI--HVTSGPV 70 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCCE--EEEETTT
T ss_pred EEEECCCCCcHHHHHHHHHhccCCCc--ccccCcc
Confidence 68999999999999999998876543 3344443
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.64 E-value=0.094 Score=50.63 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
-++|+|+.++|||||+..|++
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 379999999999999999964
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.50 E-value=0.12 Score=48.89 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=24.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i 159 (987)
+++++|..|+|||||++-+.....|+.|..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 578999999999999988766556777743
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.47 E-value=0.093 Score=51.63 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEcCCCCChHHHHHHHhccC
Q 001980 776 QALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 776 vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
+-|.||+|+||||+++++.+-+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999854
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.37 E-value=0.11 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.9
Q ss_pred EEEEcCCCCChHHHHHHHhccCC
Q 001980 776 QALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 776 vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
+-|.||+|+||||++++|.+-+.
T Consensus 55 lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 55 AMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999998764
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=88.21 E-value=0.099 Score=53.69 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhcc
Q 001980 774 QSQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl 796 (987)
=++||||..-+|||||+++|.+-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 46999999999999999999975
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.05 E-value=0.11 Score=53.35 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.++|||.-.||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999964
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.03 E-value=0.11 Score=50.80 Aligned_cols=43 Identities=21% Similarity=0.380 Sum_probs=30.7
Q ss_pred CCEEEEeCCCCCCChHHHHHHHHHHHhhhCCCeEEEEcCCCCcc
Q 001980 257 PKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI 300 (987)
Q Consensus 257 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~ 300 (987)
..++++||.- .+.......+...+.+..+...++++|++...+
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred eEEEEEeccc-cchhhHHHHHHHHhhhcccceeeccccCcHHHh
Confidence 4699999974 566677778888887765555666777776654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.01 E-value=0.11 Score=49.32 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.0
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
+++++|++|+|||||++-+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999976643
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.99 E-value=0.11 Score=53.48 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.++|||.-.||||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999965
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.98 E-value=0.12 Score=49.27 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=22.8
Q ss_pred EEEEEcCCCccHHHHHHHHH--cCCCCCcc
Q 001980 130 TVAVVGGSGSGKSTVVSLIE--RFYDPNAG 157 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~--g~~~~~~G 157 (987)
++.|+|.+|+|||||++-+. -.+.||-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 57899999999999998772 23557777
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.74 E-value=0.095 Score=52.76 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=34.6
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCccE-EEECCEeCCCCCHHHH
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH-VLLDNVDIKTLQLRWL 174 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G~-i~~~g~~~~~~~~~~~ 174 (987)
=++.|.++-|.||+|||||||+-.++.......|. |+||.+. .+++++.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a 105 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYA 105 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc--cCCHHHH
Confidence 46899999999999999999986666655555555 4556543 2344443
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=87.71 E-value=0.11 Score=56.51 Aligned_cols=36 Identities=11% Similarity=0.392 Sum_probs=28.7
Q ss_pred EEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCCC
Q 001980 776 QALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR 813 (987)
Q Consensus 776 vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~~ 813 (987)
|-++||||||||-|++.|.++.+.. -+..|.....+
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fTe 87 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFTE 87 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC--EEEeecceeee
Confidence 7899999999999999999988643 46666665544
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.67 E-value=0.12 Score=51.14 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=22.2
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCCC
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
++++|=|.-||||||+++.|.-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999987653
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.52 E-value=0.11 Score=52.30 Aligned_cols=31 Identities=19% Similarity=0.438 Sum_probs=26.6
Q ss_pred eeEEEeCCcEEEEEcCCCccHHHHHHHHHcC
Q 001980 121 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 121 i~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
.=+.+-+|++.+|+|++|+|||||+.-++.-
T Consensus 61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eeccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999998777654
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=87.49 E-value=0.092 Score=55.46 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=27.1
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCC
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYD 153 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 153 (987)
.++++..+.+.||.|+||||+.++|++++.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 447889999999999999999999999874
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.26 E-value=0.12 Score=52.34 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.7
Q ss_pred cEEEEEcCCCccHHHHHHHHHcCC
Q 001980 129 KTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 129 ~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.+|+|+||-++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999854
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=87.17 E-value=0.1 Score=52.48 Aligned_cols=41 Identities=22% Similarity=0.341 Sum_probs=31.3
Q ss_pred EEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCcc-EEEECCE
Q 001980 124 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG-HVLLDNV 164 (987)
Q Consensus 124 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~G-~i~~~g~ 164 (987)
=++.|.++-|.||+|||||||+..++....-..| -+++|.+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence 3689999999999999999999888776554434 3455543
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=87.16 E-value=0.075 Score=55.63 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcCCCC
Q 001980 128 GKTVAVVGGSGSGKSTVVSLIERFYDP 154 (987)
Q Consensus 128 G~~~~ivG~sGsGKSTLl~~l~g~~~~ 154 (987)
|.-+.|+|+.|+|||||++.+.++++|
T Consensus 28 ~h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 28 IGGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCeEEEECCCCccHHHHHHHHHHhCCC
Confidence 345899999999999999999999976
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=87.16 E-value=0.56 Score=44.62 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=34.8
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh
Q 001980 902 PAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTI 945 (987)
Q Consensus 902 p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti 945 (987)
.||+|+||+ -.|..++...+.+.|++--++...|.+|++.+.+
T Consensus 80 ~KviIId~a-d~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~l 122 (198)
T d2gnoa2 80 RKYVIVHDC-ERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYL 122 (198)
T ss_dssp SEEEEETTG-GGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEeCc-cccchhhhhHHHHHHhCCCCCceeeeccCChhhC
Confidence 489999996 4578888889999998765677788899998654
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=87.07 E-value=0.13 Score=50.73 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.3
Q ss_pred EEEEcCCCCChHHHHHHHhccCC
Q 001980 776 QALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 776 vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
+-+.||+|+||||+++++.+-+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999998654
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=86.96 E-value=0.13 Score=51.14 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 001980 775 SQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
.|-+.||+|+|||+++++|..-.
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 47899999999999999998643
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.62 E-value=0.16 Score=52.52 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=27.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccC
Q 001980 775 SQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI 811 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di 811 (987)
.+.++||||+|||.|++.|.+.+. .--|.+|-...
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l~--~~~i~~d~s~~ 88 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKALG--IELLRFDMSEY 88 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT--CEEEEEEGGGC
T ss_pred EEEEECCCcchhHHHHHHHHhhcc--CCeeEeccccc
Confidence 478999999999999999999874 23566664433
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.57 E-value=0.22 Score=49.98 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=25.9
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhcc
Q 001980 768 LRIRAGQSQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 768 l~I~~Ge~vaIVG~sGsGKSTL~~lL~rl 796 (987)
+.+-+|||++|.|.+|+|||||+.-+.+-
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 57889999999999999999998777654
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.50 E-value=0.14 Score=51.46 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=39.1
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCce-EEECCccCCCCCHHHHhcccEE
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK-VMIDGKDIRRLNLKSLRLKIGL 825 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~-I~idG~di~~i~l~~lR~~i~~ 825 (987)
=++.|..+-|.|++||||||++..+.....-..|. |+||... .++.+.+++ +|+
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~~-~Gv 110 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAKK-LGV 110 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHHH-HTC
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc--cCCHHHHHH-hCC
Confidence 57889999999999999999987777666545555 7778754 345555433 453
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.35 E-value=0.16 Score=49.48 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCChHHHHHHH-hccCCCCCc
Q 001980 774 QSQALVGASGSGKSSVIALI-ERFYDPTAG 802 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL-~rl~~p~~G 802 (987)
-||.++|.+|+|||||++-+ .+-+.|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 47999999999999999765 334457766
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.08 E-value=0.16 Score=51.31 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=17.9
Q ss_pred EEEEEcCCCccHHHHHHHHH
Q 001980 130 TVAVVGGSGSGKSTVVSLIE 149 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~ 149 (987)
-+||+|+.|||||||+..|+
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 37899999999999998884
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=85.74 E-value=0.13 Score=51.88 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.+.|+||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 35667999999999999998765
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=85.68 E-value=0.099 Score=46.33 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=18.1
Q ss_pred EeCCcEEEEEcCCCCChHHHH
Q 001980 770 IRAGQSQALVGASGSGKSSVI 790 (987)
Q Consensus 770 I~~Ge~vaIVG~sGsGKSTL~ 790 (987)
+++|+.+-|+++||||||..+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 367999999999999999655
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=85.32 E-value=0.19 Score=48.02 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 001980 131 VAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 131 ~~ivG~sGsGKSTLl~~l~g~ 151 (987)
+||+|..++|||||+..|++.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 789999999999999999864
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=85.27 E-value=0.13 Score=52.98 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=23.0
Q ss_pred EEEeCCcEEEEEcCCCccHHHHHHHHHcCC
Q 001980 123 IFFPAGKTVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 123 l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
...++| .+.++||+|+|||.|.+.|+++.
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 344444 55668999999999999999875
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=85.05 E-value=0.19 Score=51.49 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFY 152 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~ 152 (987)
.+||||...||||||+++|++--
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 59999999999999999999863
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.78 E-value=0.19 Score=48.88 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=31.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh
Q 001980 901 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTI 945 (987)
Q Consensus 901 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti 945 (987)
+.+++|+||+-. +.......+...+.+....+..+++++..+.+
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ceEEEEEecccc-cchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 367999999864 44455566666776666667788888887654
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=84.66 E-value=0.21 Score=51.71 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
.+||||..-+|||||+++|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999985
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=84.54 E-value=0.18 Score=54.53 Aligned_cols=34 Identities=26% Similarity=0.283 Sum_probs=24.8
Q ss_pred EEEEEcCCCCChHHHHH-HHhccCCCCCceEEECC
Q 001980 775 SQALVGASGSGKSSVIA-LIERFYDPTAGKVMIDG 808 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~-lL~rl~~p~~G~I~idG 808 (987)
-+.|+|.||||||++++ ++..++....+-|.+|.
T Consensus 52 H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~ 86 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 86 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred eEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 48999999999999985 45555554455566664
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=84.36 E-value=0.23 Score=48.14 Aligned_cols=45 Identities=18% Similarity=0.289 Sum_probs=32.7
Q ss_pred hccCCCEEEEeCCCCCC-ChHHHHHHHHHHHhhh-CCCeEEEEcCCC
Q 001980 253 MLKNPKILLLDEATSAL-DAGSESIVQEALDRLM-VGRTTVVVAHRL 297 (987)
Q Consensus 253 l~~~~~illlDEpts~L-D~~~~~~i~~~l~~~~-~~~tvi~vtH~~ 297 (987)
.+.+.+++++||-=.-. ++..+..+.+.+.... .++.+|+.+...
T Consensus 94 ~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~ 140 (213)
T d1l8qa2 94 MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 140 (213)
T ss_dssp HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred HHhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCc
Confidence 35689999999984433 4567888888888765 577777777653
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.35 E-value=0.22 Score=48.98 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhccCC
Q 001980 774 QSQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 774 e~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
+.|+|-|.-||||||+++.|..-+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 3689999999999999999987654
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.33 E-value=0.21 Score=48.73 Aligned_cols=43 Identities=21% Similarity=0.380 Sum_probs=32.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh
Q 001980 902 PAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTI 945 (987)
Q Consensus 902 p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHRl~ti 945 (987)
.+++++||.= .+.......+.+.|.+..+.+-++++++....+
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred eEEEEEeccc-cchhhHHHHHHHHhhhcccceeeccccCcHHHh
Confidence 4799999985 577778888888888766655666777776544
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=84.25 E-value=0.38 Score=48.57 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
.+||||-.-+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999974
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=83.88 E-value=0.32 Score=50.33 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=25.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEE
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL 161 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~ 161 (987)
++.|=|+-||||||+++.|...+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence 57888999999999999999887654443333
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.45 E-value=0.27 Score=49.18 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccCC
Q 001980 775 SQALVGASGSGKSSVIALIERFYD 798 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~ 798 (987)
-+-+.||+|+|||++++++.+...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eeEEecCCCCCchHHHHHHHHHhC
Confidence 378999999999999999998653
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.44 E-value=0.27 Score=50.74 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=24.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEEEEC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD 162 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i~~~ 162 (987)
.+.++||+|+|||.|++.|+..+. .--|.+|
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l~--~~~i~~d 84 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKALG--IELLRFD 84 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT--CEEEEEE
T ss_pred EEEEECCCcchhHHHHHHHHhhcc--CCeeEec
Confidence 468999999999999999998763 2244444
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.32 E-value=0.21 Score=48.69 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 001980 130 TVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
++.|.|.-|||||||++-++..
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6789999999999999998875
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=83.27 E-value=0.28 Score=49.56 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCccHHHHHHHHHcC
Q 001980 128 GKTVAVVGGSGSGKSTVVSLIERF 151 (987)
Q Consensus 128 G~~~~ivG~sGsGKSTLl~~l~g~ 151 (987)
..+++|+|..|.|||||++.+...
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999988653
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.92 E-value=0.28 Score=46.29 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcc---CCCCCc
Q 001980 775 SQALVGASGSGKSSVIALIERF---YDPTAG 802 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl---~~p~~G 802 (987)
|+.++|.+|+|||||++-+..- +.|+-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 6899999999999999887543 345545
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.85 E-value=0.28 Score=46.29 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=18.4
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 001980 130 TVAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g 150 (987)
++.++|..|+|||||++-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999988754
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=82.30 E-value=0.32 Score=47.37 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=18.4
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q 001980 131 VAVVGGSGSGKSTVVSLIER 150 (987)
Q Consensus 131 ~~ivG~sGsGKSTLl~~l~g 150 (987)
++++|...+|||||+..|+.
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999954
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=82.29 E-value=0.24 Score=49.84 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=28.5
Q ss_pred EEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCce
Q 001980 768 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 803 (987)
Q Consensus 768 l~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~ 803 (987)
+.|-+|||++|+|++|+|||+|+..+..-..-+...
T Consensus 62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v 97 (276)
T d1fx0a3 62 IPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVI 97 (276)
T ss_dssp SCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCE
T ss_pred ccccCCceEeeccCCCCChHHHHHHHHhhhcccCce
Confidence 578899999999999999999997665554444444
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=82.17 E-value=0.26 Score=49.48 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=27.6
Q ss_pred eEEEeCCcEEEEEcCCCccHHHHHHHHHcCCCCCc
Q 001980 122 SIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 156 (987)
Q Consensus 122 ~l~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~~~~ 156 (987)
=+.+-+|++.+|+|++|+|||+|+..+..-..-+.
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~ 95 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQN 95 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTT
T ss_pred cccccCCceEeeccCCCCChHHHHHHHHhhhcccC
Confidence 35788999999999999999999976554443333
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=82.07 E-value=0.3 Score=47.64 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=17.6
Q ss_pred EEEEcCCCccHHHHHHHHH
Q 001980 131 VAVVGGSGSGKSTVVSLIE 149 (987)
Q Consensus 131 ~~ivG~sGsGKSTLl~~l~ 149 (987)
++|+|..++|||||+..|+
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHH
Confidence 7899999999999998885
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=82.02 E-value=0.29 Score=43.34 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=25.8
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001980 895 ARAVLKNPAILLLDEATSALDAESECVLQEALERL 929 (987)
Q Consensus 895 ARAllr~p~ILlLDEaTS~LD~~te~~I~~~l~~~ 929 (987)
.+-.+++-+++|+||+= .+|..+...+...++..
T Consensus 88 ~~~~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~~ 121 (136)
T d1a1va1 88 GGCSGGAYDIIICDECH-STDATSILGIGTVLDQA 121 (136)
T ss_dssp TGGGGCCCSEEEEETTT-CCSHHHHHHHHHHHHHT
T ss_pred cchhhhcCCEEEEeccc-ccCHHHHHHHHHHHHHH
Confidence 34456778999999995 47998888887777654
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=81.89 E-value=0.33 Score=48.65 Aligned_cols=54 Identities=20% Similarity=0.312 Sum_probs=38.2
Q ss_pred EEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCc-eEEECCccCCCCCHHHHhcccEE
Q 001980 769 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAG-KVMIDGKDIRRLNLKSLRLKIGL 825 (987)
Q Consensus 769 ~I~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G-~I~idG~di~~i~l~~lR~~i~~ 825 (987)
=|+.|..+-|.|++|||||||...+..-..-..| .++||... .++.+.+ +++|+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~~a-~~~Gv 107 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPVYA-RALGV 107 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHHHH-HHTTC
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc--cCCHHHH-HHhCC
Confidence 4789999999999999999999777775543333 57887653 3444433 34554
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=81.46 E-value=0.43 Score=49.09 Aligned_cols=37 Identities=22% Similarity=0.357 Sum_probs=28.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccC-CCCCceEEECCccC
Q 001980 775 SQALVGASGSGKSSVIALIERFY-DPTAGKVMIDGKDI 811 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~-~p~~G~I~idG~di 811 (987)
.+.++||||+|||.+++.|...+ .....-+.+|....
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~ 92 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 92 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEecccc
Confidence 47899999999999999999965 33344567776443
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=81.37 E-value=0.31 Score=51.23 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=26.8
Q ss_pred EEEEcCCCCChHHHHHHHhccCCCCCceEEECCccCC
Q 001980 776 QALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR 812 (987)
Q Consensus 776 vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~idG~di~ 812 (987)
+-++||||+|||-|++.|.++.+ .--|.+|-....
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~--~~~ir~D~s~~~ 105 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLD--IPIAISDATSLT 105 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEGGGCC
T ss_pred eeeeCCCCccHHHHHHHHHhhcc--cceeehhhhhcc
Confidence 67899999999999999999864 235666654433
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=81.28 E-value=0.23 Score=49.74 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=19.5
Q ss_pred EEEEcCCCCChHHHHHHHhccC
Q 001980 776 QALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 776 vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
+.|+||.|+||||+++.+++-+
T Consensus 49 l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHHH
Confidence 5667999999999999999875
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.27 E-value=0.44 Score=41.02 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=30.3
Q ss_pred eCCcEEEEEcCCCCChHHHHHHH-hccCCCCCce-EE-ECCccC
Q 001980 771 RAGQSQALVGASGSGKSSVIALI-ERFYDPTAGK-VM-IDGKDI 811 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL-~rl~~p~~G~-I~-idG~di 811 (987)
+.|=.|-+.|-+|||||||.++| ..|.+-..|+ |+ +||.++
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni 47 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNK 47 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTC
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCH
Confidence 34667889999999999999887 6676654443 54 566654
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=81.15 E-value=0.28 Score=51.54 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=30.8
Q ss_pred eCCcEEEEEcCCCCChHHHHHHHhccCCCCCce-EEECCccCC
Q 001980 771 RAGQSQALVGASGSGKSSVIALIERFYDPTAGK-VMIDGKDIR 812 (987)
Q Consensus 771 ~~Ge~vaIVG~sGsGKSTL~~lL~rl~~p~~G~-I~idG~di~ 812 (987)
+++..+.++||.|+||||++++|.++.. |. |.+++.+.+
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~~r 191 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPLDR 191 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCTTT
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEECcchh
Confidence 5667899999999999999999999875 44 446665543
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=80.72 E-value=0.43 Score=45.65 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 001980 775 SQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
.|||+|.-.+|||||+..|++..
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhh
Confidence 48999999999999999998754
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.58 E-value=0.24 Score=48.66 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=18.2
Q ss_pred CCcEEEEEcCCCCChHHHHHHH
Q 001980 772 AGQSQALVGASGSGKSSVIALI 793 (987)
Q Consensus 772 ~Ge~vaIVG~sGsGKSTL~~lL 793 (987)
.|+.+.|++|||||||+...+.
T Consensus 57 ~g~~~~i~apTGsGKT~~~~~~ 78 (237)
T d1gkub1 57 RKESFAATAPTGVGKTSFGLAM 78 (237)
T ss_dssp TTCCEECCCCBTSCSHHHHHHH
T ss_pred CCCCEEEEecCCChHHHHHHHH
Confidence 5888999999999999865443
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=80.57 E-value=0.39 Score=48.48 Aligned_cols=24 Identities=29% Similarity=0.206 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCChHHHHHHHhcc
Q 001980 773 GQSQALVGASGSGKSSVIALIERF 796 (987)
Q Consensus 773 Ge~vaIVG~sGsGKSTL~~lL~rl 796 (987)
...|+|+|.-|.|||||++.+++-
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999988754
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=80.33 E-value=0.38 Score=45.78 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 001980 775 SQALVGASGSGKSSVIALIERFY 797 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~ 797 (987)
.|||+|+-++|||||+..|.+..
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHH
Confidence 48999999999999999998743
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| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=80.29 E-value=0.63 Score=48.03 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=25.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCCCceEEE
Q 001980 775 SQALVGASGSGKSSVIALIERFYDPTAGKVMI 806 (987)
Q Consensus 775 ~vaIVG~sGsGKSTL~~lL~rl~~p~~G~I~i 806 (987)
+|.|=|.-||||||+++.|..-+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence 58899999999999999999988754443333
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| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=80.14 E-value=0.38 Score=49.75 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=24.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCccEE
Q 001980 130 TVAVVGGSGSGKSTVVSLIERFYDPNAGHV 159 (987)
Q Consensus 130 ~~~ivG~sGsGKSTLl~~l~g~~~~~~G~i 159 (987)
+++|=|+-||||||+++.|.-.+......+
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v 36 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRI 36 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCce
Confidence 588999999999999999998876543333
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