Citrus Sinensis ID: 002028

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------98
MEEVGAQVAPSILMHQRLSSRLCEAPTMTMTMTMAKKRHLSYQAQSQNHYGGEQQNWNPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPNKTTDNINYNYNYNNQKKGNTTTTSAVTVGNVEDDGRLDLNLGGGLTAVDVEQPEPPVVTSKPNKRVRSGSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDITSRMLIHGHGNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAAHSQRSSHSSDSEKTKSTCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSPVVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEVSYSIFLLQLSAHLSLIG
cccccccccccHHHHHHHcccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccHHHHcccccccccccccEEEEcccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHcccccccHHHHHHccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccHHHHHHHHHHHHccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccEEEEEEcccEEEEEcccccccccEEEEccEEEEcccEEEEEEEEccccccccEEEEEEcccccccccccccccccccccccEEEEEEcccccccccccEEEEEcccccccccEEEccHHHHHHHHHHHHHHcccccccHHHcccHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHcccccc
ccccccccccHHHHHHHccccccccccccccccHcccccccccccccHHcccccccccccccccccccEEcccccccccHHccccccccccccccccccccccccccccccccccccEEEEcccccccccEEEEcccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHccHHHHHccccEEEEcccHHHHHHHccHcccHHHHccccHHHHHHHHcHHHHccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHccccccccHHHHccccccccccccccccccccccccccccccccccHHHHHHHcccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHccccHHHHHHHHHHHHcccccHHHccccccEEEEEEEcccHHHHHHHHHcHHHHHHHHHHcccccHccccEEEEEEccEEEEEEccEEEEEcccccccccEEEEEEEEEEEccccEEEEEEEEcccccccEEEEEEcccEEEccccccccccccccccccEEEEEccccccccccEEEEEEccccccccEEEEEcHHHHHHHHHHHHHHccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccccEEcccccccccccccHEEEEcccccHHHHHHHcccccHHHHHHHHHHHHHHHHHcc
meevgaqvapsILMHQRLssrlceaptmTMTMTMAKKRHLSYQAqsqnhyggeqqnwnpklwdwdsvgfvgkpvvdsdpevlrlggatasespnkttdninynynynnqkkgnttttsavtvgnveddgrldlnlgggltavdveqpeppvvtskpnkrvrsgspgtapypmcqvdnckedlsnakdyhrrhkvceLHSKSTKALVGKQMQRFCqqcsrfhplsefdegkRSCRRRLaghnrrrrktqpeditsrmlihghgnqsnnptanVDIVNLLTALARAQgktedrsiscssvpDREQLLMILSKinslplpadLAAKLhnfgslnrktpvhtstdvqnrlnentsspsTMDLLAVLSStltapspdtlaahsqrsshssdsektkstcpeqatpnflkrttmdfpsvggersstsyqspvedsdgqnqetrvnlplqlfssspeddsppklsssrkyfssdssnpieerspssspvvqtffpmqstsetvkseklsigrevnanvegnrsrgsimplelfrgsnkaadncsfqsfpyqagytsssgsdhspsslnsdaqdcTGRIIFKLfdkdpsqfpgtLRKEIYNWLsnspsemesyirpgcvilslyvsmpyatWEQLEGNLLQRINSLvqdsdsdfwRNARFLVHtgkqlashkdgnirvckswrtwsspelisvsplavvggqelsfklrgrnltnlgtkihctfmggyasqevtsstcqgsiYDEIILAGlkiqdtspsvlGRFFIEvengfkgnsfpvIIADATICKELSLLESEFGAEAKVCDVIsehqaheygrprsrEEVLHFLNELGWLFQrkrassivkgsdyslsrFKFLLVFSVDRGCCALVKAILDILVEGnlsmdglsRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYsltssndtpqkyifppnlagpggitplhlaactsdsdDIIDALTNDPQEVSYSIFLLQLSAHLSLIG
meevgaqvapsilmhqrlsSRLCEAPTMTMTMTMAKKRHLSYQAQSQNHYGGEQQNWNPKLWDWDSVGFVGKPVVDSDPEVLRLggatasespnkttdnINYNYNynnqkkgntTTTSAVTVGNVEDDGRLDLNLGGGLtavdveqpeppvvtskpnkrvrsgspgtapypmcQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRfhplsefdegkrscrrrlaghnrrrrktqpeditSRMLIhghgnqsnnptANVDIVNLLTALARAqgktedrsiscssvPDREQLLMILSKINSLPLPADLAAKLHNFGSlnrktpvhtstdvqnrlnentsspsTMDLLAVLSSTLTAPSPDTLAAHsqrsshssdsektkstcpeqatpnflkrttmdfpsvggersstsyqspvedsdgqnqETRVNLPLQlfssspeddsppklSSSRKYFSsdssnpieerspssspvvQTFFPMQstsetvkseklsigrevnanvegnrsrgsiMPLELFRGSNKAADNCSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLfdkdpsqfpgTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVhtgkqlashkdgnirVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVISEHQAheygrprsREEVLHFLNELGWLFQRKRASsivkgsdyslSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEVSYSIFLLQLSAHLSLIG
MEEVGAQVAPSILMHQRLSSRLCEAPtmtmtmtmAKKRHLSYQAQSQNHYGGEQQNWNPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPnkttdninynynynnqkkgnttttSAVTVGNVEddgrldlnlggglTAVDVEQPEPPVVTSKPNKRVRSGSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCrrrlaghnrrrrKTQPEDITSRMLIHGHGNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAAHsqrsshssdsektkstCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLsssrkyfssdssNPIEERSPSSSPVVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTsssgsdhspsslnsDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEVSYSIFLLQLSAHLSLIG
*****************************************************QQNWNPKLWDWDSVGFVGKPVVDS**********************INYNYNY*************VTVGNVE**GRLDLNLGGGLT************************************************HRRHKVCELH****KALVGKQMQRFCQQCSRFH*************************************************NVDIVNLLTALAR*******************QLLMILSKINSLPLPADLAAKLHNF***********************************************************************************************************************************************************************************************************************************************CTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVISEHQAHEYGR**SREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEVSYSIFLLQLSAHL****
*****AQVAPSILMHQRLSSRL*************************************KLWDWDSVGFV***************************************************************NLGG************************************QVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSC******************************************************************************************************************************************************************************************************************************************************************************************************************************************************FDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVISEHQ***Y*RPRSREEVLHFLNELGWLFQR************SLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEVSYSIFLLQLSAHLSLIG
MEEVGAQVAPSILMHQRLSSRLCEAPTMTMTMTMAKKRHLSYQAQSQNHYGGEQQNWNPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPNKTTDNINYNYNYNNQKKGNTTTTSAVTVGNVEDDGRLDLNLGGGLTAVDVEQPEP***************PGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLA***********EDITSRMLIHGHGNQSNNPTANVDIVNLLTALAR*************SVPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPS*************************EQATPNFLKRTTMDFP***********************ETRVNLPLQLFS***********************************VVQTFFPMQ**********LSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAG****************DAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEVSYSIFLLQLSAHLSLIG
*****AQVAPSILMHQRLSSRLCEA***************************EQQNWNPKLWDWDSVGFVGKPVVDS***************************************TSAVTVGNVEDDGRLDLNLGGGLT****************************PYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAG*******************************NVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSLPLPADL*A***N****************************************TAPSPDT******************************************************************L*****************************************************************************************************************************DCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGA***************YGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEVSYSIFLLQLSAHLSLIG
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEEVGAQVAPSILMHQRLSSRLCEAPTMTMTMTMAKKRHLSYQAQSQNHYGGEQQNWNPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPNKTTDNINYNYNYNNQKKGNTTTTSAVTVGNVEDDGRLDLNLGGGLTAVDVEQPEPPVVTSKPNKRVRSGSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDITSRMLIHGHGNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSSVPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAAHSQRSSHSSDSEKTKSTCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERSPSSSPVVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEVSYSIFLLQLSAHLSLIG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query978 2.2.26 [Sep-21-2011]
Q8RY95 1035 Squamosa promoter-binding yes no 0.902 0.853 0.562 0.0
Q700C2 988 Squamosa promoter-binding no no 0.828 0.819 0.569 0.0
Q6Z8M8 1140 Squamosa promoter-binding yes no 0.953 0.818 0.456 0.0
A2YX04 1140 Squamosa promoter-binding N/A no 0.953 0.818 0.456 0.0
Q75LH6 969 Squamosa promoter-binding no no 0.399 0.403 0.352 4e-63
Q9LGU7 862 Squamosa promoter-binding no no 0.391 0.444 0.330 3e-62
Q9SMX9 881 Squamosa promoter-binding no no 0.384 0.426 0.341 1e-60
Q9S7P5 927 Squamosa promoter-binding no no 0.374 0.394 0.357 4e-60
P0DI11359 Squamosa promoter-binding no no 0.088 0.242 0.643 6e-30
B9DI20359 Squamosa promoter-binding no no 0.088 0.242 0.643 6e-30
>sp|Q8RY95|SPL14_ARATH Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3 Back     alignment and function desciption
 Score = 1008 bits (2607), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/981 (56%), Positives = 689/981 (70%), Gaps = 98/981 (9%)

Query: 1   MEEVGAQVAPSILMHQRLSSRLCEAPTMTMTMTMAKKRHLSY-------QAQSQNHYGGE 53
           M+EVGAQVA  + +HQ                ++ +KR L Y       Q+Q Q      
Sbjct: 1   MDEVGAQVAAPMFIHQ----------------SLGRKRDLYYPMSNRLVQSQPQ-----R 39

Query: 54  QQNWNPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPNKTTDNINYNYNYNNQKKGN 113
           +  WN K+WDWDS  F  KPV   D EV                                
Sbjct: 40  RDEWNSKMWDWDSRRFEAKPV---DVEVQEFD---------------------------- 68

Query: 114 TTTTSAVTVGNVEDDGR-LDLNLGGGLTAVDVEQPEPPVVTSKPNKRVRSGSPGTAPYPM 172
                 +T+ N   + R LDLNLG GLTAV+        V  +PNK+VRSGSPG   YPM
Sbjct: 69  ------LTLRNRSGEERGLDLNLGSGLTAVEETTTTTQNV--RPNKKVRSGSPG-GNYPM 119

Query: 173 CQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRS 232
           CQVDNC EDLS+AKDYHRRHKVCE+HSK+TKALVGKQMQRFCQQCSRFH LSEFDEGKRS
Sbjct: 120 CQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRS 179

Query: 233 CRRRLAGHNRRRRKT-QPEDITSRMLIHGHGNQSNN-PTANVDIVNLLTALARAQGKTED 290
           CRRRLAGHNRRRRKT QPE++ S +++ G+ + +NN   AN+D++ LLTALA AQGK   
Sbjct: 180 CRRRLAGHNRRRRKTTQPEEVASGVVVPGNHDTTNNTANANMDLMALLTALACAQGKNAV 239

Query: 291 RS-ISCSSVPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNEN 349
           +  +   +VPDREQLL IL+KIN+LPLP DL +KL+N GSL RK   H + + QN +N  
Sbjct: 240 KPPVGSPAVPDREQLLQILNKINALPLPMDLVSKLNNIGSLARKNMDHPTVNPQNDMN-- 297

Query: 350 TSSPSTMDLLAVLSSTLTAPSPDTLAAHSQRSSHSSDSEKTKSTCPEQATPNFLKRTTMD 409
            +SPSTMDLLAVLS+TL + SPD LA  SQ    + DSEKTK +  E      L++ T  
Sbjct: 298 GASPSTMDLLAVLSTTLGSSSPDALAILSQGGFGNKDSEKTKLSSYENGVTTNLEKRTFG 357

Query: 410 FPSVGGERSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSS 469
           F SVGGERSS+S QSP +DSD + Q+TR +L LQLF+SSPED+S P ++SSRKY+SS SS
Sbjct: 358 FSSVGGERSSSSNQSPSQDSDSRGQDTRSSLSLQLFTSSPEDESRPTVASSRKYYSSASS 417

Query: 470 NPIEERSPSSSPVVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGS 529
           NP+E+RSPSSSPV+Q  FP+Q++ ET++S+          N + +  R   +PLELF  S
Sbjct: 418 NPVEDRSPSSSPVMQELFPLQASPETMRSK----------NHKNSSPRTGCLPLELFGAS 467

Query: 530 NKAADNCSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRK 589
           N+ A + +F+ F  Q+GY +SSGSD+SP SLNSDAQD TG+I+FKL DKDPSQ PGTLR 
Sbjct: 468 NRGAADPNFKGFGQQSGY-ASSGSDYSPPSLNSDAQDRTGKIVFKLLDKDPSQLPGTLRS 526

Query: 590 EIYNWLSNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRN 649
           EIYNWLSN PSEMESYIRPGCV+LS+YV+M  A WEQLE  LLQR+  L+Q+S SDFWRN
Sbjct: 527 EIYNWLSNIPSEMESYIRPGCVVLSVYVAMSPAAWEQLEQKLLQRLGVLLQNSPSDFWRN 586

Query: 650 ARFLVHTGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLG 709
           ARF+V+TG+QLASHK+G +R  KSWRTW+SPELISVSP+AVV G+E S  +RGR+LTN G
Sbjct: 587 ARFIVNTGRQLASHKNGKVRCSKSWRTWNSPELISVSPVAVVAGEETSLVVRGRSLTNDG 646

Query: 710 TKIHCTFMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSF 769
             I CT MG Y + EVT + C+ +I+DE+ +   K+Q+  P  LGR FIEVENGF+G+SF
Sbjct: 647 ISIRCTHMGSYMAMEVTRAVCRQTIFDELNVNSFKVQNVHPGFLGRCFIEVENGFRGDSF 706

Query: 770 PVIIADATICKELSLLESEFGAEAKVCDVISEHQAHEYGR-PRSREEVLHFLNELGWLFQ 828
           P+IIA+A+ICKEL+ L  EF  +++    ++E QA    R P SREEVL FLNELGWLFQ
Sbjct: 707 PLIIANASICKELNRLGEEFHPKSQ---DMTEEQAQSSNRGPTSREEVLCFLNELGWLFQ 763

Query: 829 RKRASSIVKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLW 888
           + + S + + SD+SL+RFKFLLV SV+R  CAL++ +LD+LVE NL  D L+RE+L+ML 
Sbjct: 764 KNQTSELREQSDFSLARFKFLLVCSVERDYCALIRTLLDMLVERNLVNDELNREALDMLA 823

Query: 889 EIQLLNRAVKMKCRRMVDLLIHY-----SLTSSNDTPQKYIFPPNLAGPGGITPLHLAAC 943
           EIQLLNRAVK K  +MV+LLIHY     +L+SS    +K++F PN+ GPGGITPLHLAAC
Sbjct: 824 EIQLLNRAVKRKSTKMVELLIHYLVNPLTLSSS----RKFVFLPNITGPGGITPLHLAAC 879

Query: 944 TSDSDDIIDALTNDPQEVSYS 964
           TS SDD+ID LTNDPQE+  S
Sbjct: 880 TSGSDDMIDLLTNDPQEIGLS 900
Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q700C2|SPL16_ARATH Squamosa promoter-binding-like protein 16 OS=Arabidopsis thaliana GN=SPL16 PE=2 SV=2 Back     alignment and function description
>sp|Q6Z8M8|SPL15_ORYSJ Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. japonica GN=SPL15 PE=2 SV=1 Back     alignment and function description
>sp|A2YX04|SPL15_ORYSI Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. indica GN=SPL15 PE=2 SV=1 Back     alignment and function description
>sp|Q75LH6|SPL6_ORYSJ Squamosa promoter-binding-like protein 6 OS=Oryza sativa subsp. japonica GN=SPL6 PE=2 SV=1 Back     alignment and function description
>sp|Q9LGU7|SPL1_ORYSJ Squamosa promoter-binding-like protein 1 OS=Oryza sativa subsp. japonica GN=SPL1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SMX9|SPL1_ARATH Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2 Back     alignment and function description
>sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1 Back     alignment and function description
>sp|P0DI11|SP13B_ARATH Squamosa promoter-binding-like protein 13B OS=Arabidopsis thaliana GN=SPL13B PE=3 SV=1 Back     alignment and function description
>sp|B9DI20|SP13A_ARATH Squamosa promoter-binding-like protein 13A OS=Arabidopsis thaliana GN=SPL13A PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query978
2555393621073 Squamosa promoter-binding protein, putat 0.958 0.873 0.703 0.0
2254576891070 PREDICTED: squamosa promoter-binding-lik 0.945 0.864 0.702 0.0
2240656271044 predicted protein [Populus trichocarpa] 0.834 0.781 0.699 0.0
4494557401031 PREDICTED: squamosa promoter-binding-lik 0.918 0.870 0.587 0.0
297745623921 unnamed protein product [Vitis vinifera] 0.795 0.844 0.614 0.0
4495316631031 PREDICTED: LOW QUALITY PROTEIN: squamosa 0.918 0.870 0.585 0.0
152180911035 squamosa promoter binding-like protein 1 0.902 0.853 0.562 0.0
3565741551009 PREDICTED: squamosa promoter-binding-lik 0.866 0.839 0.588 0.0
2978450781040 hypothetical protein ARALYDRAFT_472338 [ 0.917 0.862 0.566 0.0
3565233881019 PREDICTED: squamosa promoter-binding-lik 0.874 0.839 0.593 0.0
>gi|255539362|ref|XP_002510746.1| Squamosa promoter-binding protein, putative [Ricinus communis] gi|223551447|gb|EEF52933.1| Squamosa promoter-binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1280 bits (3311), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 683/971 (70%), Positives = 776/971 (79%), Gaps = 34/971 (3%)

Query: 1   MEEVGAQVAPSILMHQRLSSRLCEAPTMTMTMTMAKKRHLSYQAQSQNHYGGEQQ---NW 57
           MEEVGAQVA  I +HQ LSSR C+A       +MAKKR LSYQ  +  H+   Q    NW
Sbjct: 1   MEEVGAQVASPIFIHQALSSRFCDA------ASMAKKRDLSYQTSNFQHHRFPQNPRDNW 54

Query: 58  NPKLWDWDSVGFVGKPVVDSDPEVLRLGGATASESPNKTTDNINYNYNYNNQKKGNTTTT 117
           NPK WDWDSV FV KP+ D+D  VL+LG A+ S+   KT  ++N+N    N         
Sbjct: 55  NPKAWDWDSVRFVAKPL-DADTNVLQLGTAS-SDHQKKTNASVNHNLTLKN--------- 103

Query: 118 SAVTVGNVEDDGRLDLNLGGGLTAVDVEQPEPPVVTSKPNKRVRSGSPGTAPYPMCQVDN 177
            A   G+ EDDG L LNL G   AV     E PV  S+PNKRVRSGSPGTA YPMCQVDN
Sbjct: 104 -APPAGD-EDDG-LRLNLAGVFNAV-----EEPV--SRPNKRVRSGSPGTATYPMCQVDN 153

Query: 178 CKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRL 237
           CKEDLSNAKDYHRRHKVCELHSKST+ALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRL
Sbjct: 154 CKEDLSNAKDYHRRHKVCELHSKSTQALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRL 213

Query: 238 AGHNRRRRKTQPEDITSRMLIHGHGNQSNNPTANVDIVNLLTALARAQGKTEDRSISCSS 297
           AGHNRRRRKTQPED+TSR+L+ G  N+    +AN+DIVNLLTALAR QGK  D+ I+ SS
Sbjct: 214 AGHNRRRRKTQPEDVTSRLLLPG--NRDTASSANLDIVNLLTALARTQGKHADKRINASS 271

Query: 298 VPDREQLLMILSKINSLPLPADLAAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMD 357
           +PDR+QL+ ILSKINSLPLP DLAA+L N GSLNRK P   S++ QNRL    SSPSTMD
Sbjct: 272 MPDRDQLIQILSKINSLPLPMDLAAQLSNIGSLNRKNPEQPSSEHQNRLLGTASSPSTMD 331

Query: 358 LLAVLSSTLTAPSPDTLAAHSQRSSHSSDSEKTKSTCPEQ-ATPNFLKRTTMDFPSVGGE 416
           LLAVLS+TL A +PD LA  SQRSS SSDSEK+K TC +Q A PN  KR  +DFPS+  E
Sbjct: 332 LLAVLSATLAASAPDALAFLSQRSSQSSDSEKSKLTCVDQDAGPNLQKRPIVDFPSMALE 391

Query: 417 RSSTSYQSPVEDSDGQNQETRVNLPLQLFSSSPEDDSPPKLSSSRKYFSSDSSNPIEERS 476
           +SS+ YQSPVE+SD Q QE+  NLPLQLFSSSPE+ SPPKL+SSRKYFSSDSSNP E RS
Sbjct: 392 KSSSCYQSPVEESDCQLQESHPNLPLQLFSSSPEESSPPKLASSRKYFSSDSSNPSEGRS 451

Query: 477 PSSSP-VVQTFFPMQSTSETVKSEKLSIGREVNANVEGNRSRGSIMPLELFRGSNKAADN 535
           PSSSP V+Q  FP+QS ++TVKSEK+SI REVNAN+EG+RS GSI+PLELFRGS+  A  
Sbjct: 452 PSSSPPVMQKLFPLQSNADTVKSEKVSITREVNANIEGSRSHGSILPLELFRGSDGRAVQ 511

Query: 536 CSFQSFPYQAGYTSSSGSDHSPSSLNSDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWL 595
            S+QSFPYQAGYTSSSGSDHSPSS NSDAQD TGRIIFKLFDKDPS FPG LR +IYNWL
Sbjct: 512 SSYQSFPYQAGYTSSSGSDHSPSSQNSDAQDRTGRIIFKLFDKDPSHFPGKLRTQIYNWL 571

Query: 596 SNSPSEMESYIRPGCVILSLYVSMPYATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVH 655
           SNSPSEMESYIRPGCV+LS+Y+SM  A WE+LE NLLQ+++SLVQDS SDFWR  RFL+H
Sbjct: 572 SNSPSEMESYIRPGCVVLSVYLSMSSAKWERLERNLLQQVDSLVQDSYSDFWRTGRFLLH 631

Query: 656 TGKQLASHKDGNIRVCKSWRTWSSPELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCT 715
           TG+QLASHKDGNIR+CKSWRTWSSPELISVSP+AVVGGQE S  LRGRNLTN GTKIHCT
Sbjct: 632 TGRQLASHKDGNIRLCKSWRTWSSPELISVSPVAVVGGQETSLLLRGRNLTNAGTKIHCT 691

Query: 716 FMGGYASQEVTSSTCQGSIYDEIILAGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIAD 775
           +MGGY S EV  ST  G+IYDEI ++G K+  + PS LGR FIEVENGFKGNSFPVI+AD
Sbjct: 692 YMGGYTSMEVMESTLPGAIYDEINMSGFKVHGSPPSSLGRLFIEVENGFKGNSFPVIVAD 751

Query: 776 ATICKELSLLESEFGAEAKVCDVISEHQAHEYGRPRSREEVLHFLNELGWLFQRKRASSI 835
           ATICKEL LLE EF   +K CD+ISE QA   GRP+SREE LHFLNELGWLFQR+RASS+
Sbjct: 752 ATICKELRLLECEFDEISKDCDIISEEQAQYLGRPKSREEALHFLNELGWLFQRRRASSV 811

Query: 836 VKGSDYSLSRFKFLLVFSVDRGCCALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNR 895
            +  DYSL RFKFLL+FSV+R  CALVK ILD+LVE N+ M GLS+E LEML EI L+NR
Sbjct: 812 YEIPDYSLGRFKFLLIFSVERDYCALVKTILDMLVERNMGMSGLSKECLEMLSEIHLVNR 871

Query: 896 AVKMKCRRMVDLLIHYSLTSSNDTPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALT 955
           AVK +CR+MVDLLIHY +  S  + + YIFPP+LAGPGGITPLHLAACTS SDD++DALT
Sbjct: 872 AVKRQCRKMVDLLIHYYINCSELSSKSYIFPPSLAGPGGITPLHLAACTSGSDDLVDALT 931

Query: 956 NDPQEVSYSIF 966
           NDPQE+  S +
Sbjct: 932 NDPQEIGLSCW 942

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225457689|ref|XP_002273784.1| PREDICTED: squamosa promoter-binding-like protein 14-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224065627|ref|XP_002301891.1| predicted protein [Populus trichocarpa] gi|222843617|gb|EEE81164.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449455740|ref|XP_004145609.1| PREDICTED: squamosa promoter-binding-like protein 14-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297745623|emb|CBI40788.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449531663|ref|XP_004172805.1| PREDICTED: LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 14-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15218091|ref|NP_173522.1| squamosa promoter binding-like protein 14 [Arabidopsis thaliana] gi|67461574|sp|Q8RY95.3|SPL14_ARATH RecName: Full=Squamosa promoter-binding-like protein 14; AltName: Full=Protein FUMONISIN B1-RESISTANT 6; AltName: Full=SPL1-related protein 2 gi|4836890|gb|AAD30593.1|AC007369_3 Unknown protein [Arabidopsis thaliana] gi|332191929|gb|AEE30050.1| squamosa promoter binding-like protein 14 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356574155|ref|XP_003555217.1| PREDICTED: squamosa promoter-binding-like protein 14-like [Glycine max] Back     alignment and taxonomy information
>gi|297845078|ref|XP_002890420.1| hypothetical protein ARALYDRAFT_472338 [Arabidopsis lyrata subsp. lyrata] gi|297336262|gb|EFH66679.1| hypothetical protein ARALYDRAFT_472338 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356523388|ref|XP_003530322.1| PREDICTED: squamosa promoter-binding-like protein 14-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query978
TAIR|locus:2037355 1035 SPL14 "squamosa promoter bindi 0.822 0.776 0.562 1.5e-243
TAIR|locus:2011706 988 AT1G76580 [Arabidopsis thalian 0.813 0.805 0.530 1.2e-214
TAIR|locus:2041329 881 SPL1 "squamosa promoter bindin 0.410 0.455 0.333 1.2e-85
TAIR|locus:2101402 927 SPL12 "squamosa promoter-bindi 0.381 0.402 0.354 8.6e-83
TAIR|locus:2159717359 SPL13A "SQUAMOSA PROMOTER-BIND 0.107 0.292 0.485 6.3e-23
TAIR|locus:2832472359 SPL13B "SQUAMOSA PROMOTER-BIND 0.107 0.292 0.485 6.3e-23
TAIR|locus:504956101333 SPL8 "squamosa promoter bindin 0.081 0.240 0.578 4.9e-20
TAIR|locus:2087105181 SPL5 "squamosa promoter bindin 0.080 0.436 0.569 1.7e-19
TAIR|locus:2026428405 AT1G69170 [Arabidopsis thalian 0.078 0.190 0.576 4.7e-18
TAIR|locus:2016014396 SPL10 "squamosa promoter bindi 0.092 0.227 0.521 4.9e-18
TAIR|locus:2037355 SPL14 "squamosa promoter binding protein-like 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2273 (805.2 bits), Expect = 1.5e-243, Sum P(2) = 1.5e-243
 Identities = 465/826 (56%), Positives = 582/826 (70%)

Query:   144 VEQPEPPVVTSKPNKRVRSGSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTK 203
             VE+        +PNK+VRSGSPG   YPMCQVDNC EDLS+AKDYHRRHKVCE+HSK+TK
Sbjct:    92 VEETTTTTQNVRPNKKVRSGSPG-GNYPMCQVDNCTEDLSHAKDYHRRHKVCEVHSKATK 150

Query:   204 ALVGKQMQRFCQQCSRFHPLSEFDEGKRSCXXXXXXXXXXXXKT-QPEDITSRMLIHG-H 261
             ALVGKQMQRFCQQCSRFH LSEFDEGKRSC            KT QPE++ S +++ G H
Sbjct:   151 ALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQPEEVASGVVVPGNH 210

Query:   262 GNQSNNPTANVDIVNLLTALARAQGKTEDRS-ISCSSVPDREQLLMILSKINSLPLPADL 320
                +N   AN+D++ LLTALA AQGK   +  +   +VPDREQLL IL+KIN+LPLP DL
Sbjct:   211 DTTNNTANANMDLMALLTALACAQGKNAVKPPVGSPAVPDREQLLQILNKINALPLPMDL 270

Query:   321 AAKLHNFGSLNRKTPVHTSTDVQNRLNENTSSPSTMDLLAVLSSTLTAPSPDTLAAHXXX 380
              +KL+N GSL RK   H + + QN +N   +SPSTMDLLAVLS+TL + SPD LA     
Sbjct:   271 VSKLNNIGSLARKNMDHPTVNPQNDMNG--ASPSTMDLLAVLSTTLGSSSPDALAILSQG 328

Query:   381 XXXXXXXXXXXXXCPEQATPNFLKRTTMDFPSVGGERSSTSYQSPVEDSDGQNQETRVNL 440
                            E      L++ T  F SVGGERSS+S QSP +DSD + Q+TR +L
Sbjct:   329 GFGNKDSEKTKLSSYENGVTTNLEKRTFGFSSVGGERSSSSNQSPSQDSDSRGQDTRSSL 388

Query:   441 PLQLFSSSPEDDSPPKLXXXXXXXXXXXXNPIEERSPSSSPVVQTFFPMQSTSETVKSEK 500
              LQLF+SSPED+S P +            NP+E+RSPSSSPV+Q  FP+Q++ ET++S+ 
Sbjct:   389 SLQLFTSSPEDESRPTVASSRKYYSSASSNPVEDRSPSSSPVMQELFPLQASPETMRSK- 447

Query:   501 LSIGREVNANVEGNRSRGSIMPLELFRGSNKAADNCSFQSFPYQAGYTXXXXXXXXXXXX 560
                      N + +  R   +PLELF  SN+ A + +F+ F  Q+GY             
Sbjct:   448 ---------NHKNSSPRTGCLPLELFGASNRGAADPNFKGFGQQSGYASSGSDYSPPSLN 498

Query:   561 XXDAQDCTGRIIFKLFDKDPSQFPGTLRKEIYNWLSNSPSEMESYIRPGCVILSLYVSMP 620
               DAQD TG+I+FKL DKDPSQ PGTLR EIYNWLSN PSEMESYIRPGCV+LS+YV+M 
Sbjct:   499 S-DAQDRTGKIVFKLLDKDPSQLPGTLRSEIYNWLSNIPSEMESYIRPGCVVLSVYVAMS 557

Query:   621 YATWEQLEGNLLQRINSLVQDSDSDFWRNARFLVHTGKQLASHKDGNIRVCKSWRTWSSP 680
              A WEQLE  LLQR+  L+Q+S SDFWRNARF+V+TG+QLASHK+G +R  KSWRTW+SP
Sbjct:   558 PAAWEQLEQKLLQRLGVLLQNSPSDFWRNARFIVNTGRQLASHKNGKVRCSKSWRTWNSP 617

Query:   681 ELISVSPLAVVGGQELSFKLRGRNLTNLGTKIHCTFMGGYASQEVTSSTCQGSIYDEIIL 740
             ELISVSP+AVV G+E S  +RGR+LTN G  I CT MG Y + EVT + C+ +I+DE+ +
Sbjct:   618 ELISVSPVAVVAGEETSLVVRGRSLTNDGISIRCTHMGSYMAMEVTRAVCRQTIFDELNV 677

Query:   741 AGLKIQDTSPSVLGRFFIEVENGFKGNSFPVIIADATICKELSLLESEFGAEAKVCDVIS 800
                K+Q+  P  LGR FIEVENGF+G+SFP+IIA+A+ICKEL+ L  EF  +++  D+ +
Sbjct:   678 NSFKVQNVHPGFLGRCFIEVENGFRGDSFPLIIANASICKELNRLGEEFHPKSQ--DM-T 734

Query:   801 EHQAHEYGR-PRSREEVLHFLNELGWLFQRKRASSIVKGSDYSLSRFKFLLVFSVDRGCC 859
             E QA    R P SREEVL FLNELGWLFQ+ + S + + SD+SL+RFKFLLV SV+R  C
Sbjct:   735 EEQAQSSNRGPTSREEVLCFLNELGWLFQKNQTSELREQSDFSLARFKFLLVCSVERDYC 794

Query:   860 ALVKAILDILVEGNLSMDGLSRESLEMLWEIQLLNRAVKMKCRRMVDLLIHYSLTSSN-D 918
             AL++ +LD+LVE NL  D L+RE+L+ML EIQLLNRAVK K  +MV+LLIHY +      
Sbjct:   795 ALIRTLLDMLVERNLVNDELNREALDMLAEIQLLNRAVKRKSTKMVELLIHYLVNPLTLS 854

Query:   919 TPQKYIFPPNLAGPGGITPLHLAACTSDSDDIIDALTNDPQEVSYS 964
             + +K++F PN+ GPGGITPLHLAACTS SDD+ID LTNDPQE+  S
Sbjct:   855 SSRKFVFLPNITGPGGITPLHLAACTSGSDDMIDLLTNDPQEIGLS 900
GO:0003677 "DNA binding" evidence=IEA;ISS;IDA
GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA;TAS
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA
GO:0042742 "defense response to bacterium" evidence=IEP
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2011706 AT1G76580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2041329 SPL1 "squamosa promoter binding protein-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101402 SPL12 "squamosa promoter-binding protein-like 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159717 SPL13A "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2832472 SPL13B "SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504956101 SPL8 "squamosa promoter binding protein-like 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087105 SPL5 "squamosa promoter binding protein-like 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026428 AT1G69170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016014 SPL10 "squamosa promoter binding protein-like 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6Z8M8SPL15_ORYSJNo assigned EC number0.45680.95390.8184yesno
Q8RY95SPL14_ARATHNo assigned EC number0.56260.90280.8531yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query978
pfam0311079 pfam03110, SBP, SBP domain 5e-53
>gnl|CDD|190527 pfam03110, SBP, SBP domain Back     alignment and domain information 
 Score =  178 bits (454), Expect = 5e-53
 Identities = 61/79 (77%), Positives = 65/79 (82%)

Query: 172 MCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKR 231
            CQV+ C  DLSNAKDYHRRHKVCE+HSK+   LV    QRFCQQCSRFH LSEFDEGKR
Sbjct: 1   RCQVEGCGADLSNAKDYHRRHKVCEVHSKAPVVLVSGLEQRFCQQCSRFHLLSEFDEGKR 60

Query: 232 SCRRRLAGHNRRRRKTQPE 250
           SCRRRLAGHN RRRK QP+
Sbjct: 61  SCRRRLAGHNERRRKPQPD 79

SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands. Length = 79

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 978
PF0311079 SBP: SBP domain; InterPro: IPR004333 The SBP plant 100.0
KOG4412 226 consensus 26S proteasome regulatory complex, subun 98.65
PF1363754 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 98.35
PF1279689 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 98.34
PF1385756 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 98.24
KOG0515752 consensus p53-interacting protein 53BP/ASPP, conta 97.91
PHA02741169 hypothetical protein; Provisional 97.8
KOG0512228 consensus Fetal globin-inducing factor (contains a 97.77
PHA02741169 hypothetical protein; Provisional 97.76
PHA02875 413 ankyrin repeat protein; Provisional 97.57
PHA02743166 Viral ankyrin protein; Provisional 97.53
PHA02791 284 ankyrin-like protein; Provisional 97.51
PHA02791284 ankyrin-like protein; Provisional 97.49
PHA02736154 Viral ankyrin protein; Provisional 97.45
PHA02878 477 ankyrin repeat protein; Provisional 97.43
PHA02743166 Viral ankyrin protein; Provisional 97.41
PHA02874 434 ankyrin repeat protein; Provisional 97.41
PHA02875 413 ankyrin repeat protein; Provisional 97.39
KOG4412226 consensus 26S proteasome regulatory complex, subun 97.36
PHA02795 437 ankyrin-like protein; Provisional 97.31
PHA02878 477 ankyrin repeat protein; Provisional 97.26
PHA03095 471 ankyrin-like protein; Provisional 97.25
PHA02874 434 ankyrin repeat protein; Provisional 97.24
PHA02859209 ankyrin repeat protein; Provisional 97.21
PHA02798 489 ankyrin-like protein; Provisional 97.19
KOG0509 600 consensus Ankyrin repeat and DHHC-type Zn-finger d 97.18
PHA02989 494 ankyrin repeat protein; Provisional 97.12
PHA03100 480 ankyrin repeat protein; Provisional 97.08
PLN03192 823 Voltage-dependent potassium channel; Provisional 97.06
PHA03100 480 ankyrin repeat protein; Provisional 97.05
PHA02859209 ankyrin repeat protein; Provisional 97.02
PHA02884 300 ankyrin repeat protein; Provisional 96.99
PTZ00322 664 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas 96.97
PHA02946 446 ankyin-like protein; Provisional 96.97
PHA03095 471 ankyrin-like protein; Provisional 96.9
PHA02730 672 ankyrin-like protein; Provisional 96.86
PLN03192 823 Voltage-dependent potassium channel; Provisional 96.81
COG0666235 Arp FOG: Ankyrin repeat [General function predicti 96.8
KOG4177 1143 consensus Ankyrin [Cell wall/membrane/envelope bio 96.7
PHA02876 682 ankyrin repeat protein; Provisional 96.61
PF1279689 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 96.58
PHA02946446 ankyin-like protein; Provisional 96.43
PHA02736154 Viral ankyrin protein; Provisional 96.43
PHA02716 764 CPXV016; CPX019; EVM010; Provisional 96.35
TIGR00870 743 trp transient-receptor-potential calcium channel p 96.31
PHA02884 300 ankyrin repeat protein; Provisional 96.26
PHA02917 661 ankyrin-like protein; Provisional 96.18
PHA02798 489 ankyrin-like protein; Provisional 96.13
PHA02989 494 ankyrin repeat protein; Provisional 96.11
PHA02876 682 ankyrin repeat protein; Provisional 96.09
KOG0195 448 consensus Integrin-linked kinase [Signal transduct 96.09
KOG0510 929 consensus Ankyrin repeat protein [General function 96.0
COG0666235 Arp FOG: Ankyrin repeat [General function predicti 95.97
KOG4177 1143 consensus Ankyrin [Cell wall/membrane/envelope bio 95.78
PF1360630 Ank_3: Ankyrin repeat 95.69
KOG0510 929 consensus Ankyrin repeat protein [General function 95.67
PHA02716 764 CPXV016; CPX019; EVM010; Provisional 95.65
KOG1710 396 consensus MYND Zn-finger and ankyrin repeat protei 95.61
cd00204126 ANK ankyrin repeats; ankyrin repeats mediate prote 95.58
KOG0195 448 consensus Integrin-linked kinase [Signal transduct 95.54
KOG0520 975 consensus Uncharacterized conserved protein, conta 95.41
PHA02795 437 ankyrin-like protein; Provisional 95.39
PF0002333 Ank: Ankyrin repeat Hereditary spherocytosis; Inte 95.32
cd00204126 ANK ankyrin repeats; ankyrin repeats mediate prote 95.29
PHA02917 661 ankyrin-like protein; Provisional 95.23
PF1363754 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 95.22
KOG0502296 consensus Integral membrane ankyrin-repeat protein 94.97
KOG0509 600 consensus Ankyrin repeat and DHHC-type Zn-finger d 94.47
PF1360630 Ank_3: Ankyrin repeat 94.43
PHA02730 672 ankyrin-like protein; Provisional 94.1
PF0002333 Ank: Ankyrin repeat Hereditary spherocytosis; Inte 93.58
PHA02792 631 ankyrin-like protein; Provisional 93.3
KOG0505 527 consensus Myosin phosphatase, regulatory subunit [ 93.22
KOG0505 527 consensus Myosin phosphatase, regulatory subunit [ 92.93
PTZ00322 664 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas 92.82
KOG0514452 consensus Ankyrin repeat protein [General function 92.54
KOG0522 560 consensus Ankyrin repeat protein [General function 92.42
TIGR00870 743 trp transient-receptor-potential calcium channel p 92.35
KOG3676 782 consensus Ca2+-permeable cation channel OSM-9 and 91.48
PHA02792 631 ankyrin-like protein; Provisional 91.07
KOG4214117 consensus Myotrophin and similar proteins [Transcr 90.98
KOG0507 854 consensus CASK-interacting adaptor protein (caskin 90.96
PF1385756 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 90.6
KOG0508 615 consensus Ankyrin repeat protein [General function 89.4
KOG0508 615 consensus Ankyrin repeat protein [General function 89.11
KOG3609 822 consensus Receptor-activated Ca2+-permeable cation 89.06
KOG07821004 consensus Predicted diacylglycerol kinase [Signal 88.23
KOG0502296 consensus Integral membrane ankyrin-repeat protein 87.92
KOG0520 975 consensus Uncharacterized conserved protein, conta 85.72
smart0024830 ANK ankyrin repeats. Ankyrin repeats are about 33 85.31
>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain [] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-35  Score=265.48  Aligned_cols=78  Identities=65%  Similarity=1.119  Sum_probs=63.1

Q ss_pred             CcccCCChhhhccCccccccccccccccCcceeeeCCccchHhhhhccCCCCCCcccccchHHHHHhhHHhhhccCCC
Q 002028          172 MCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP  249 (978)
Q Consensus       172 ~CqV~gC~~dL~~~k~Y~rRhrvCe~H~kA~~v~v~G~~~RFCQQCsrFH~L~eFd~~kRSCR~rL~~hn~RRRk~~~  249 (978)
                      +||||||++||+.+|.||+||||||.|+||++|+++|.++||||||+|||+|+||||+|||||++|++||+||||.++
T Consensus         1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~   78 (79)
T PF03110_consen    1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ   78 (79)
T ss_dssp             C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred             CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence            599999999999999999999999999999999999999999999999999999999999999999999999999865

Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A Back     alignment and domain information
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain Back     alignment and domain information
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A Back     alignment and domain information
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PHA02741 hypothetical protein; Provisional Back     alignment and domain information
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] Back     alignment and domain information
>PHA02741 hypothetical protein; Provisional Back     alignment and domain information
>PHA02875 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02743 Viral ankyrin protein; Provisional Back     alignment and domain information
>PHA02791 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02791 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02736 Viral ankyrin protein; Provisional Back     alignment and domain information
>PHA02878 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02743 Viral ankyrin protein; Provisional Back     alignment and domain information
>PHA02874 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02875 ankyrin repeat protein; Provisional Back     alignment and domain information
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02795 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02878 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA03095 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02874 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02859 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02798 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] Back     alignment and domain information
>PHA02989 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA03100 ankyrin repeat protein; Provisional Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>PHA03100 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02859 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02884 ankyrin repeat protein; Provisional Back     alignment and domain information
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional Back     alignment and domain information
>PHA02946 ankyin-like protein; Provisional Back     alignment and domain information
>PHA03095 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02730 ankyrin-like protein; Provisional Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only] Back     alignment and domain information
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PHA02876 ankyrin repeat protein; Provisional Back     alignment and domain information
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain Back     alignment and domain information
>PHA02946 ankyin-like protein; Provisional Back     alignment and domain information
>PHA02736 Viral ankyrin protein; Provisional Back     alignment and domain information
>PHA02716 CPXV016; CPX019; EVM010; Provisional Back     alignment and domain information
>TIGR00870 trp transient-receptor-potential calcium channel protein Back     alignment and domain information
>PHA02884 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02917 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02798 ankyrin-like protein; Provisional Back     alignment and domain information
>PHA02989 ankyrin repeat protein; Provisional Back     alignment and domain information
>PHA02876 ankyrin repeat protein; Provisional Back     alignment and domain information
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0510 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only] Back     alignment and domain information
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PF13606 Ank_3: Ankyrin repeat Back     alignment and domain information
>KOG0510 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PHA02716 CPXV016; CPX019; EVM010; Provisional Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins Back     alignment and domain information
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>PHA02795 ankyrin-like protein; Provisional Back     alignment and domain information
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature Back     alignment and domain information
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins Back     alignment and domain information
>PHA02917 ankyrin-like protein; Provisional Back     alignment and domain information
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A Back     alignment and domain information
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] Back     alignment and domain information
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] Back     alignment and domain information
>PF13606 Ank_3: Ankyrin repeat Back     alignment and domain information
>PHA02730 ankyrin-like protein; Provisional Back     alignment and domain information
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature Back     alignment and domain information
>PHA02792 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional Back     alignment and domain information
>KOG0514 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0522 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>TIGR00870 trp transient-receptor-potential calcium channel protein Back     alignment and domain information
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PHA02792 ankyrin-like protein; Provisional Back     alignment and domain information
>KOG4214 consensus Myotrophin and similar proteins [Transcription] Back     alignment and domain information
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] Back     alignment and domain information
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A Back     alignment and domain information
>KOG0508 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG0508 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] Back     alignment and domain information
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] Back     alignment and domain information
>smart00248 ANK ankyrin repeats Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query978
1wj0_A60 Solution Structure Of The Dna-Binding Domain Of Squ 2e-22
1ul4_A94 Solution Structure Of The Dna-Binding Domain Of Squ 7e-21
1ul5_A88 Solution Structure Of The Dna-binding Domain Of Squ 2e-13
>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 12 Lacking The Second Zinc- Binding Site Length = 60 Back     alignment and structure 
Iteration: 1

 Score =  105 bits (261), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/55 (80%), Positives = 46/55 (83%)
Query: 173 CQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFD 227
           CQVDNC  DLS  KDYHRRHKVCE+HSK+T ALVG  MQRFCQQCSRFH L EFD
Sbjct: 6   CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60
>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 Length = 94 Back     alignment and structure
>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa Promoter Binding Protein-like 7 Length = 88 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query978
1ul4_A94 SPL4, squamosa promoter binding protein-like 4; tr 2e-42
1ul5_A88 SPL7, squamosa promoter binding protein-like 7; tr 2e-39
1wj0_A60 Squamosa promoter-binding protein-like 12; DNA-bin 4e-33
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 94 Back     alignment and structure
 Score =  149 bits (376), Expect = 2e-42
 Identities = 56/93 (60%), Positives = 66/93 (70%)

Query: 163 GSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHP 222
           GS G++   +CQVD C  D+  AK YHRRHKVCE+H+K++   +    QRFCQQCSRFH 
Sbjct: 1   GSSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHD 60

Query: 223 LSEFDEGKRSCRRRLAGHNRRRRKTQPEDITSR 255
           L EFDE KRSCRRRLAGHN RRRK+  E   S 
Sbjct: 61  LQEFDEAKRSCRRRLAGHNERRRKSSGESGPSS 93
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 88 Back     alignment and structure
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 60 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query978
1ul4_A94 SPL4, squamosa promoter binding protein-like 4; tr 100.0
1ul5_A88 SPL7, squamosa promoter binding protein-like 7; tr 100.0
1wj0_A60 Squamosa promoter-binding protein-like 12; DNA-bin 99.94
1n0q_A93 3ANK, 3 ankyrin repeats; structural protein; 1.26A 98.49
4gpm_A169 Engineered protein OR264; de novo protein, structu 98.47
3aaa_C123 Myotrophin, protein V-1; actin capping protein, ba 98.45
2zgd_A110 3 repeat synthetic ankyrin; ankyrin repeat, hydrox 98.37
4gpm_A169 Engineered protein OR264; de novo protein, structu 98.36
1k1a_A 241 B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa 98.29
3deo_A183 Signal recognition particle 43 kDa protein; chloro 98.28
3c5r_A137 BARD-1, BRCA1-associated ring domain protein 1; an 98.27
2jab_A136 H10-2-G3; HER2, darpin, ankyrin repeat protein, me 98.26
2jab_A136 H10-2-G3; HER2, darpin, ankyrin repeat protein, me 98.26
3twr_A165 Tankyrase-2; ankyrin repeat, protein-protein inter 98.25
3ehr_A222 Osteoclast-stimulating factor 1; beta barrel, heli 98.23
1ycs_B239 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres 98.21
1n0r_A126 4ANK, 4 ankyrin repeats; structural protein; 1.50A 98.21
2l6b_A115 NR1C; ankyrin, consensus, repeat protein, ising mo 98.21
3f6q_A179 Integrin-linked protein kinase; ILK, integrin-link 98.19
1d9s_A136 Cyclin-dependent kinase 4 inhibitor B; helix-turn- 98.19
1awc_B153 Protein (GA binding protein beta 1); complex (tran 98.19
1n0q_A93 3ANK, 3 ankyrin repeats; structural protein; 1.26A 98.19
3twr_A165 Tankyrase-2; ankyrin repeat, protein-protein inter 98.18
1awc_B153 Protein (GA binding protein beta 1); complex (tran 98.17
2vge_A229 RELA-associated inhibitor; iaspp, nucleus, apoptos 98.17
3v31_A167 Ankyrin repeat family A protein 2; structural geno 98.16
3ui2_A244 Signal recognition particle 43 kDa protein, chlor; 98.16
1ihb_A162 P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit 98.16
1d9s_A136 Cyclin-dependent kinase 4 inhibitor B; helix-turn- 98.15
2rfm_A192 Putative ankyrin repeat protein TV1425; ANK repeat 98.15
1bd8_A156 P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr 98.14
1oy3_D282 Transcription factor inhibitor I-kappa-B-beta; pro 98.14
3v30_A172 DNA-binding protein rfxank; structural genomics co 98.14
2y1l_E169 Darpin-8.4; hydrolase-inhibitor complex, DEVD darp 98.13
3f6q_A179 Integrin-linked protein kinase; ILK, integrin-link 98.13
3v31_A167 Ankyrin repeat family A protein 2; structural geno 98.13
2dzn_A228 Probable 26S proteasome regulatory subunit P28; an 98.12
1ihb_A162 P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit 98.12
4b93_B269 Ankyrin repeat domain-containing protein 27; endoc 98.12
4b93_B269 Ankyrin repeat domain-containing protein 27; endoc 98.12
1oy3_D 282 Transcription factor inhibitor I-kappa-B-beta; pro 98.11
3v30_A172 DNA-binding protein rfxank; structural genomics co 98.1
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 98.1
1n0r_A126 4ANK, 4 ankyrin repeats; structural protein; 1.50A 98.1
3c5r_A137 BARD-1, BRCA1-associated ring domain protein 1; an 98.1
2etb_A256 Transient receptor potential cation channel subfam 98.1
3jxi_A260 Vanilloid receptor-related osmotically activated p 98.09
3jxi_A260 Vanilloid receptor-related osmotically activated p 98.09
1s70_B 299 130 kDa myosin-binding subunit of smooth muscle my 98.09
2rfa_A232 Transient receptor potential cation channel subfa 98.09
2etb_A256 Transient receptor potential cation channel subfam 98.08
3aaa_C123 Myotrophin, protein V-1; actin capping protein, ba 98.08
4hbd_A276 KN motif and ankyrin repeat domain-containing Pro; 98.08
2y1l_E169 Darpin-8.4; hydrolase-inhibitor complex, DEVD darp 98.07
1k1a_A241 B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa 98.05
4hbd_A276 KN motif and ankyrin repeat domain-containing Pro; 98.05
2rfm_A192 Putative ankyrin repeat protein TV1425; ANK repeat 98.04
1ikn_D236 Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 98.02
3ljn_A 364 Hypothetical protein; ankyrin, structural genomics 98.01
3hra_A201 Ankyrin repeat family protein; structural protein; 98.01
3hra_A201 Ankyrin repeat family protein; structural protein; 97.99
2vge_A229 RELA-associated inhibitor; iaspp, nucleus, apoptos 97.99
3ljn_A364 Hypothetical protein; ankyrin, structural genomics 97.98
2f8y_A223 Notch homolog 1, translocation-associated (drosoph 97.96
2pnn_A273 Transient receptor potential cation channel subfa 97.96
1bi7_B156 P16INK4A, MTS1, multiple tumor suppressor; cyclin 97.96
1ikn_D236 Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 97.95
3aji_A231 26S proteasome non-ATPase regulatory subunit 10; g 97.95
3utm_A 351 Tankyrase-1; tankyrase, TNKS, ankryin repeat clust 97.95
1yyh_A253 HN1;, notch 1, ankyrin domain; ankyrin repeats, ce 97.93
1s70_B299 130 kDa myosin-binding subunit of smooth muscle my 97.93
2pnn_A273 Transient receptor potential cation channel subfa 97.93
3kea_A 285 K1L; tropism, ANK repeat, viral protein; 2.30A {Va 97.91
1bd8_A156 P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr 97.91
2xai_A 261 ASB-9, ankyrin repeat and SOCS box protein 9; tran 97.91
1wdy_A285 2-5A-dependent ribonuclease; hydrolase, RNA-bindin 97.9
1wdy_A 285 2-5A-dependent ribonuclease; hydrolase, RNA-bindin 97.9
3utm_A 351 Tankyrase-1; tankyrase, TNKS, ankryin repeat clust 97.89
3b7b_A237 Euchromatic histone-lysine N-methyltransferase 1; 97.89
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 97.89
2dzn_A228 Probable 26S proteasome regulatory subunit P28; an 97.88
2rfa_A232 Transient receptor potential cation channel subfa 97.88
3aji_A231 26S proteasome non-ATPase regulatory subunit 10; g 97.87
1yyh_A253 HN1;, notch 1, ankyrin domain; ankyrin repeats, ce 97.85
2l6b_A115 NR1C; ankyrin, consensus, repeat protein, ising mo 97.85
2f8y_A223 Notch homolog 1, translocation-associated (drosoph 97.83
4g8k_A 337 2-5A-dependent ribonuclease; ankyrin-repeat domain 97.82
2zgd_A110 3 repeat synthetic ankyrin; ankyrin repeat, hydrox 97.82
4g8k_A337 2-5A-dependent ribonuclease; ankyrin-repeat domain 97.81
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 97.81
1bi7_B156 P16INK4A, MTS1, multiple tumor suppressor; cyclin 97.8
3d9h_A285 CDNA FLJ77766, highly similar to HOMO sapiens anky 97.8
3ehr_A222 Osteoclast-stimulating factor 1; beta barrel, heli 97.79
1ycs_B239 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres 97.77
3ui2_A244 Signal recognition particle 43 kDa protein, chlor; 97.76
3eu9_A240 Huntingtin-interacting protein 14; epigenetics, an 97.76
3b7b_A237 Euchromatic histone-lysine N-methyltransferase 1; 97.76
1n11_A437 Ankyrin; clathrin, BAND 3, anion exchanger, struct 97.75
2fo1_E373 LIN-12 protein; beta-barrel, protein-DNA complex, 97.74
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 97.74
2xai_A261 ASB-9, ankyrin repeat and SOCS box protein 9; tran 97.73
1sw6_A327 Regulatory protein SWI6; transcription regulation, 97.73
2fo1_E 373 LIN-12 protein; beta-barrel, protein-DNA complex, 97.72
3jue_A368 Arfgap with coiled-coil, ANK repeat and PH domain 97.72
3deo_A183 Signal recognition particle 43 kDa protein; chloro 97.71
3d9h_A285 CDNA FLJ77766, highly similar to HOMO sapiens anky 97.7
3eu9_A240 Huntingtin-interacting protein 14; epigenetics, an 97.68
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 97.67
1dcq_A278 PYK2-associated protein beta; zinc-binding module, 97.65
2b0o_E301 UPLC1; arfgap, structural genomics, structural gen 97.64
1n11_A437 Ankyrin; clathrin, BAND 3, anion exchanger, struct 97.62
3kea_A 285 K1L; tropism, ANK repeat, viral protein; 2.30A {Va 97.6
3t8k_A186 Uncharacterized protein; structural genomics, PSI- 97.57
1sw6_A 327 Regulatory protein SWI6; transcription regulation, 97.56
3t8k_A186 Uncharacterized protein; structural genomics, PSI- 97.25
2aja_A 376 Ankyrin repeat family protein; NESG, Q5ZSV0, struc 97.15
2aja_A 376 Ankyrin repeat family protein; NESG, Q5ZSV0, struc 96.35
>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Back     alignment and structure
Probab=100.00  E-value=1.4e-39  Score=296.62  Aligned_cols=90  Identities=60%  Similarity=1.047  Sum_probs=80.4

Q ss_pred             CCCCCCCCcccCCChhhhccCccccccccccccccCcceeeeCCccchHhhhhccCCCCCCcccccchHHHHHhhHHhhh
Q 002028          165 PGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRR  244 (978)
Q Consensus       165 ~~~~~~~~CqV~gC~~dL~~~k~Y~rRhrvCe~H~kA~~v~v~G~~~RFCQQCsrFH~L~eFd~~kRSCR~rL~~hn~RR  244 (978)
                      +|+++.++||||||++||+.+|+||+||||||.|+||++|+++|+++||||||+|||+|+|||+.|||||+||++||+||
T Consensus         3 ~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RR   82 (94)
T 1ul4_A            3 SGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERR   82 (94)
T ss_dssp             -----CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCC
T ss_pred             CCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHh
Confidence            44578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCccccc
Q 002028          245 RKTQPEDITS  254 (978)
Q Consensus       245 Rk~~~~~~~~  254 (978)
                      ||+++++.++
T Consensus        83 Rk~~~~~~~~   92 (94)
T 1ul4_A           83 RKSSGESGPS   92 (94)
T ss_dssp             CSCCCC----
T ss_pred             ccCCCCcCCC
Confidence            9999997653
>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Back     alignment and structure
>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Back     alignment and structure
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Back     alignment and structure
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A Back     alignment and structure
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Back     alignment and structure
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Back     alignment and structure
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A Back     alignment and structure
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Back     alignment and structure
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Back     alignment and structure
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Back     alignment and structure
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Back     alignment and structure
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Back     alignment and structure
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Back     alignment and structure
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Back     alignment and structure
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Back     alignment and structure
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Back     alignment and structure
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Back     alignment and structure
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Back     alignment and structure
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Back     alignment and structure
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Back     alignment and structure
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Back     alignment and structure
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Back     alignment and structure
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Back     alignment and structure
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Back     alignment and structure
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Back     alignment and structure
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Back     alignment and structure
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Back     alignment and structure
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Back     alignment and structure
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Back     alignment and structure
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Back     alignment and structure
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Back     alignment and structure
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Back     alignment and structure
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Back     alignment and structure
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Back     alignment and structure
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Back     alignment and structure
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Back     alignment and structure
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Back     alignment and structure
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} Back     alignment and structure
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} Back     alignment and structure
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Back     alignment and structure
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Back     alignment and structure
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Back     alignment and structure
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Back     alignment and structure
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* Back     alignment and structure
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* Back     alignment and structure
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Back     alignment and structure
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Back     alignment and structure
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Back     alignment and structure
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Back     alignment and structure
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} Back     alignment and structure
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Back     alignment and structure
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Back     alignment and structure
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} Back     alignment and structure
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Back     alignment and structure
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Back     alignment and structure
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Back     alignment and structure
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Back     alignment and structure
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Back     alignment and structure
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Back     alignment and structure
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Back     alignment and structure
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Back     alignment and structure
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Back     alignment and structure
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Back     alignment and structure
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Back     alignment and structure
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Back     alignment and structure
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Back     alignment and structure
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Back     alignment and structure
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Back     alignment and structure
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Back     alignment and structure
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Back     alignment and structure
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Back     alignment and structure
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Back     alignment and structure
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Back     alignment and structure
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Back     alignment and structure
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Back     alignment and structure
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Back     alignment and structure
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Back     alignment and structure
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Back     alignment and structure
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* Back     alignment and structure
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Back     alignment and structure
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Back     alignment and structure
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Back     alignment and structure
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Back     alignment and structure
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Back     alignment and structure
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Back     alignment and structure
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Back     alignment and structure
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Back     alignment and structure
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Back     alignment and structure
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Back     alignment and structure
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Back     alignment and structure
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Back     alignment and structure
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Back     alignment and structure
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Back     alignment and structure
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Back     alignment and structure
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Back     alignment and structure
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Back     alignment and structure
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 978
d1ul4a_81 g.72.1.1 (A:) Squamosa promoter binding protein-li 1e-46
d1ul5a_86 g.72.1.1 (A:) Squamosa promoter binding protein-li 2e-46
d1wj0a_58 g.72.1.1 (A:) Squamosa-promoter binding-like prote 6e-33
>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 81 Back     information, alignment and structure

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  158 bits (402), Expect = 1e-46
 Identities = 52/80 (65%), Positives = 60/80 (75%)

Query: 171 PMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGK 230
            +CQVD C  D+  AK YHRRHKVCE+H+K++   +    QRFCQQCSRFH L EFDE K
Sbjct: 2   RLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAK 61

Query: 231 RSCRRRLAGHNRRRRKTQPE 250
           RSCRRRLAGHN RRRK+  E
Sbjct: 62  RSCRRRLAGHNERRRKSSGE 81
>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 86 Back     information, alignment and structure
>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 58 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query978
d1ul4a_81 Squamosa promoter binding protein-like 4, DNA-bind 100.0
d1ul5a_86 Squamosa promoter binding protein-like 7, DNA-bind 100.0
d1wj0a_58 Squamosa-promoter binding-like protein 12, DNA-bin 99.94
d1ycsb1130 53BP2 {Human (Homo sapiens) [TaxId: 9606]} 98.44
d1myoa_118 Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] 98.37
d1dcqa1154 Pyk2-associated protein beta {Mouse (Mus musculus) 98.28
d1k1aa_ 228 bcl-3 {Human (Homo sapiens) [TaxId: 9606]} 98.16
d1ot8a_209 Neurogenic locus notch receptor domain {Fruit fly 98.15
d1n11a_408 Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} 98.11
d1oy3d_255 Transcription factor inhibitor I-kappa-B-beta, IKB 98.11
d1awcb_153 GA bindinig protein (GABP) beta 1 {Mouse (Mus musc 98.1
d1wdya_285 RNase L, 2-5a-dependent ribonuclease {Human (Homo 98.1
d1s70b_291 Myosin phosphatase targeting subunit 1, MYPT1 {Chi 98.04
d2fo1e1277 Lin-12 {Caenorhabditis elegans [TaxId: 6239]} 98.04
d1bi7b_125 Cell cycle inhibitor p16ink4A {Human (Homo sapiens 98.03
d1uoha_223 26S proteasome non-ATPase regulatory subunit 10, g 98.02
d1oy3d_ 255 Transcription factor inhibitor I-kappa-B-beta, IKB 98.02
d1bd8a_156 Cell cycle inhibitor p19ink4D {Human (Homo sapiens 97.96
d1ixva_229 26S proteasome non-ATPase regulatory subunit 10, g 97.91
d1ihba_156 p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] 97.81
d1iknd_221 I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 97.79
d1ixva_ 229 26S proteasome non-ATPase regulatory subunit 10, g 97.78
d1n11a_ 408 Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} 97.77
d1myoa_118 Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] 97.67
d1dcqa1154 Pyk2-associated protein beta {Mouse (Mus musculus) 97.66
d1ycsb1130 53BP2 {Human (Homo sapiens) [TaxId: 9606]} 97.65
d1k1aa_ 228 bcl-3 {Human (Homo sapiens) [TaxId: 9606]} 97.63
d1awcb_153 GA bindinig protein (GABP) beta 1 {Mouse (Mus musc 97.61
d2fo1e1 277 Lin-12 {Caenorhabditis elegans [TaxId: 6239]} 97.59
d1uoha_223 26S proteasome non-ATPase regulatory subunit 10, g 97.52
d1sw6a_301 Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch 97.49
d1ihba_156 p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] 97.44
d1wdya_ 285 RNase L, 2-5a-dependent ribonuclease {Human (Homo 97.43
d2ajaa1 346 Hypothetical protein LPG2416 {Legionella pneumophi 97.39
d1s70b_ 291 Myosin phosphatase targeting subunit 1, MYPT1 {Chi 97.36
d1iknd_ 221 I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 97.31
d1bi7b_125 Cell cycle inhibitor p16ink4A {Human (Homo sapiens 97.3
d1sw6a_ 301 Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch 97.22
d1bd8a_156 Cell cycle inhibitor p19ink4D {Human (Homo sapiens 96.7
d1ot8a_209 Neurogenic locus notch receptor domain {Fruit fly 96.61
d2ajaa1 346 Hypothetical protein LPG2416 {Legionella pneumophi 96.32
>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=4.2e-38  Score=277.77  Aligned_cols=80  Identities=65%  Similarity=1.152  Sum_probs=78.1

Q ss_pred             CCcccCCChhhhccCccccccccccccccCcceeeeCCccchHhhhhccCCCCCCcccccchHHHHHhhHHhhhccCCCc
Q 002028          171 PMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPE  250 (978)
Q Consensus       171 ~~CqV~gC~~dL~~~k~Y~rRhrvCe~H~kA~~v~v~G~~~RFCQQCsrFH~L~eFd~~kRSCR~rL~~hn~RRRk~~~~  250 (978)
                      .+||||||++||+.+|+||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+||||++++
T Consensus         2 ~~CqVdgC~~dls~~k~YhrRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~   81 (81)
T d1ul4a_           2 RLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGE   81 (81)
T ss_dssp             CCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCSCCCC
T ss_pred             CeeeeCCCcchHHhhHHhhhhhHHHHHHcCCCeEEECCeechHHHHhcccccHHHhccccccHHHHHHHHhHHhccCCCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999875
>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure