Citrus Sinensis ID: 002074
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 972 | 2.2.26 [Sep-21-2011] | |||||||
| P36428 | 1003 | Alanine--tRNA ligase OS=A | yes | no | 0.953 | 0.924 | 0.783 | 0.0 | |
| Q5A8K2 | 969 | Alanine--tRNA ligase OS=C | N/A | no | 0.953 | 0.956 | 0.486 | 0.0 | |
| Q54Y20 | 946 | Alanine--tRNA ligase, cyt | yes | no | 0.926 | 0.952 | 0.501 | 0.0 | |
| P40825 | 983 | Alanine--tRNA ligase, mit | yes | no | 0.876 | 0.866 | 0.512 | 0.0 | |
| P50475 | 968 | Alanine--tRNA ligase, cyt | yes | no | 0.926 | 0.930 | 0.486 | 0.0 | |
| Q8CFX8 | 968 | Alanine--tRNA ligase, cyt | N/A | no | 0.926 | 0.930 | 0.487 | 0.0 | |
| Q5RC02 | 968 | Alanine--tRNA ligase, cyt | yes | no | 0.929 | 0.932 | 0.484 | 0.0 | |
| Q8BGQ7 | 968 | Alanine--tRNA ligase, cyt | yes | no | 0.926 | 0.930 | 0.487 | 0.0 | |
| P49588 | 968 | Alanine--tRNA ligase, cyt | yes | no | 0.929 | 0.932 | 0.484 | 0.0 | |
| O13914 | 959 | Alanine--tRNA ligase OS=S | yes | no | 0.938 | 0.950 | 0.486 | 0.0 |
| >sp|P36428|SYA_ARATH Alanine--tRNA ligase OS=Arabidopsis thaliana GN=ALATS PE=1 SV=3 | Back alignment and function desciption |
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Score = 1535 bits (3974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 750/957 (78%), Positives = 834/957 (87%), Gaps = 30/957 (3%)
Query: 45 VAAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKP 104
VA MPG++P +WPA +VRDT+ FF K H W SSPVVP NDPTLLFANAGMNQYKP
Sbjct: 46 VAVMPGSEPSETQWPAKRVRDTYVDFFRGKGHKFWPSSPVVPHNDPTLLFANAGMNQYKP 105
Query: 105 IFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK 164
IFLGTADPNT+LSKL+RACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK
Sbjct: 106 IFLGTADPNTELSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK 165
Query: 165 NEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCK 224
EAIEWAWELLTKVY LP DR+YATYFGGDEKAGL PDNEARDIWLK LP+ RVLPFGCK
Sbjct: 166 KEAIEWAWELLTKVYGLPTDRIYATYFGGDEKAGLQPDNEARDIWLKVLPSGRVLPFGCK 225
Query: 225 DNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP 284
DNFWEMGDTGPCGPC+EIHYDR GNRDAASLVNNDDPTC+EIWN+VFIQFNRESDGSLKP
Sbjct: 226 DNFWEMGDTGPCGPCTEIHYDRIGNRDAASLVNNDDPTCLEIWNLVFIQFNRESDGSLKP 285
Query: 285 LPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVD 344
LPAKHVDTG+GFERLTS+LQNKMSNYDTDVFMPIFD IQ+ATGARPYSGKVG +D D+VD
Sbjct: 286 LPAKHVDTGMGFERLTSVLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVD 345
Query: 345 MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNI 404
MAYRVVADHIRTLSFAIADGS PGNEGREYVLRRILRRAVRYG E+LKA++GFFNGLV+
Sbjct: 346 MAYRVVADHIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGKEILKAEEGFFNGLVSS 405
Query: 405 VVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFI 464
V++VMGDVF ELK+ E I +II EEASF KTL KGIEKF+KA Q VQG LSG DAFI
Sbjct: 406 VIRVMGDVFTELKEHEKKITDIIKEEEASFCKTLAKGIEKFRKAGQAVQGNTLSGDDAFI 465
Query: 465 LWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524
LWDTYGFPLDLTQLMAEERGLLVD++GFN AM+EARERSRSAQNKQAGGAIVMDADAT+
Sbjct: 466 LWDTYGFPLDLTQLMAEERGLLVDVDGFNKAMEEARERSRSAQNKQAGGAIVMDADATST 525
Query: 525 LHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQ 584
LHK GV ATDDSFK+IWFQDH+S +KAIYTGS F+ES + VG+VL S+SFYAEQGGQ
Sbjct: 526 LHKAGVSATDDSFKYIWFQDHESELKAIYTGSTFLESSAASDNVGLVLGSTSFYAEQGGQ 585
Query: 585 IFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPN 644
IFD G IEG FG+F V NVQI+GGFV+HIG L++ G SVG++VICKVDY+RRKLIAPN
Sbjct: 586 IFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYLSKETGEVSVGDKVICKVDYERRKLIAPN 645
Query: 645 HTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAE 704
HTCTHMLN+AL+EVLGDH+DQKGS+VLPEKLRFDFSHGKPVDPE LRRIESIVN+QIK E
Sbjct: 646 HTCTHMLNYALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESIVNKQIKDE 705
Query: 705 LDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELC 764
LDVFSKEA L+EAK I GLRAVFGEVYPDPVRVV+IGRKVEDLLADPEN EW +S+E C
Sbjct: 706 LDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVRVVSIGRKVEDLLADPENNEWSLLSSEFC 765
Query: 765 GGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGS 824
GGTH++NTREA+AFALLSEEGIAKGIRR+TAVTT A+ A AA LE+EV+DAS+ EGS
Sbjct: 766 GGTHITNTREAKAFALLSEEGIAKGIRRVTAVTTECAFDALNAASLLEREVEDASRAEGS 825
Query: 825 LLEK------------------------------NQVRKAQKKVAEENLQKAVKVATETA 854
LEK N+VRKAQKK+AE+NL+K+VK+ATE A
Sbjct: 826 ALEKKVSALKSRVDAAIIPAAKKADIRTKIASLQNEVRKAQKKIAEQNLKKSVKLATEAA 885
Query: 855 EAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEK 914
E+AAS+GK FCI +++VGLDAAAVREAV KV+E+KGM +MVFSTDE+TNKAVVCAGVPEK
Sbjct: 886 ESAASDGKTFCIIQLDVGLDAAAVREAVSKVMEKKGMSIMVFSTDESTNKAVVCAGVPEK 945
Query: 915 SDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMKL 971
SDQ K L+V+EWLT AL PLKGRCGKGKGGLASGQGTDA+QV A+D+A+ FA+MKL
Sbjct: 946 SDQFKPLDVTEWLTTALGPLKGRCGKGKGGLASGQGTDASQVQAALDMASSFASMKL 1002
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Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 7 |
| >sp|Q5A8K2|SYA_CANAL Alanine--tRNA ligase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ALA1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q54Y20|SYAC_DICDI Alanine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=alaS PE=2 SV=1 | Back alignment and function description |
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| >sp|P40825|SYA_YEAST Alanine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ALA1 PE=1 SV=3 | Back alignment and function description |
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| >sp|P50475|SYAC_RAT Alanine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Aars PE=1 SV=3 | Back alignment and function description |
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| >sp|Q8CFX8|SYAC_MESAU Alanine--tRNA ligase, cytoplasmic OS=Mesocricetus auratus GN=Aars PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5RC02|SYAC_PONAB Alanine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=AARS PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8BGQ7|SYAC_MOUSE Alanine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Aars PE=1 SV=1 | Back alignment and function description |
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| >sp|P49588|SYAC_HUMAN Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2 | Back alignment and function description |
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| >sp|O13914|SYA_SCHPO Alanine--tRNA ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ala1 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 972 | ||||||
| 255580622 | 1025 | alanyl-tRNA synthetase, putative [Ricinu | 0.954 | 0.905 | 0.820 | 0.0 | |
| 225423779 | 1002 | PREDICTED: alanyl-tRNA synthetase-like [ | 0.965 | 0.936 | 0.819 | 0.0 | |
| 449461691 | 956 | PREDICTED: alanine--tRNA ligase-like [Cu | 0.950 | 0.966 | 0.811 | 0.0 | |
| 449508396 | 956 | PREDICTED: LOW QUALITY PROTEIN: alanine- | 0.950 | 0.966 | 0.809 | 0.0 | |
| 297737260 | 960 | unnamed protein product [Vitis vinifera] | 0.950 | 0.962 | 0.813 | 0.0 | |
| 30694735 | 1003 | Alanyl-tRNA synthetase [Arabidopsis thal | 0.953 | 0.924 | 0.783 | 0.0 | |
| 297852712 | 955 | cytosolic tRNA-Ala synthetase [Arabidops | 0.950 | 0.967 | 0.785 | 0.0 | |
| 5734779 | 955 | cytosolic tRNA-Ala synthetase [Arabidops | 0.950 | 0.967 | 0.784 | 0.0 | |
| 334183197 | 963 | Alanyl-tRNA synthetase [Arabidopsis thal | 0.950 | 0.959 | 0.777 | 0.0 | |
| 1673365 | 1003 | mitochondrial tRNA-Ala synthetase [Arabi | 0.953 | 0.924 | 0.780 | 0.0 |
| >gi|255580622|ref|XP_002531134.1| alanyl-tRNA synthetase, putative [Ricinus communis] gi|223529283|gb|EEF31254.1| alanyl-tRNA synthetase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1647 bits (4264), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 786/958 (82%), Positives = 851/958 (88%), Gaps = 30/958 (3%)
Query: 45 VAAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKP 104
+AAMPG DPQ +EWPA KVRDTF FFEDK HV+WKSSPVVPVNDPTLLFANAGMNQ+KP
Sbjct: 68 IAAMPGVDPQEMEWPAKKVRDTFISFFEDKKHVHWKSSPVVPVNDPTLLFANAGMNQFKP 127
Query: 105 IFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK 164
IFLGTADPNT LSKL+RACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK
Sbjct: 128 IFLGTADPNTALSKLSRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK 187
Query: 165 NEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCK 224
EAI WAWELLTK+Y+LPADR+YATYFGGDEKAGLAPD EARD WL+FLP RVLPFGCK
Sbjct: 188 REAIGWAWELLTKIYKLPADRIYATYFGGDEKAGLAPDAEARDFWLQFLPPERVLPFGCK 247
Query: 225 DNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP 284
DNFWEMGDTGPCGPC+EIHYDR GNRDA+ LVNNDDPTCIEIWN+VFIQFNRESDGSLKP
Sbjct: 248 DNFWEMGDTGPCGPCTEIHYDRVGNRDASQLVNNDDPTCIEIWNLVFIQFNRESDGSLKP 307
Query: 285 LPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVD 344
LPAKHVDTG+GFERLTS+LQNKMSNYDTDVF+PIFDAIQQATGARPYSGKVG+DD D+VD
Sbjct: 308 LPAKHVDTGMGFERLTSVLQNKMSNYDTDVFLPIFDAIQQATGARPYSGKVGSDDVDRVD 367
Query: 345 MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNI 404
MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQ+GFFNGLVNI
Sbjct: 368 MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQEGFFNGLVNI 427
Query: 405 VVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFI 464
VVKVMGDVFPEL Q E IREII EEASFGKTLLKGIEKFKKAAQ+VQGKV QDAF+
Sbjct: 428 VVKVMGDVFPELIQNEVRIREIIKEEEASFGKTLLKGIEKFKKAAQEVQGKVSCLQDAFV 487
Query: 465 LWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524
LWDTYGFPLDLTQLMAEERGL VD+EGFNNAMDEARERSR+AQNKQAGG I+MDADAT+A
Sbjct: 488 LWDTYGFPLDLTQLMAEERGLWVDVEGFNNAMDEARERSRNAQNKQAGGDIIMDADATSA 547
Query: 525 LHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQ 584
LHK+GV TDDS+KFIWFQDH+SVIKAIYTG+EF+ S NEVGIVL S+SFYAEQGGQ
Sbjct: 548 LHKKGVSVTDDSYKFIWFQDHESVIKAIYTGTEFLGSTTSSNEVGIVLESTSFYAEQGGQ 607
Query: 585 IFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPN 644
IFD G +EG FGSF V NVQI+GGFV+HIGSLT A R SVG++VICKVDYDRR LIAPN
Sbjct: 608 IFDTGSLEGTFGSFQVSNVQIFGGFVVHIGSLTRAAPRLSVGDKVICKVDYDRRTLIAPN 667
Query: 645 HTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAE 704
HTCTHMLNFALREVLG+HVDQKGS+VLPEKLRFDFSHGKPVDP LR+IESIVNEQIKAE
Sbjct: 668 HTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVDPALLRKIESIVNEQIKAE 727
Query: 705 LDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELC 764
L+V +KEATL+EAK INGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEW SISAELC
Sbjct: 728 LEVSAKEATLSEAKRINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWSSISAELC 787
Query: 765 GGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGS 824
GGTH+SNT+EA+AFALLSEEGIAKG+RRITAVTT A+KA E A LE+E D+ SK EGS
Sbjct: 788 GGTHISNTKEAKAFALLSEEGIAKGVRRITAVTTDGAFKAMELASLLEQEADEISKTEGS 847
Query: 825 LLEK------------------------------NQVRKAQKKVAEENLQKAVKVATETA 854
LLEK ++VRKAQKK++EEN+QKAVK+ATE A
Sbjct: 848 LLEKKVASLKSRVDSAPIPAAKKFDIRTKISALQDEVRKAQKKISEENMQKAVKIATEMA 907
Query: 855 EAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQKGMPVMVFSTDETTNKAVVCAGVPEK 914
E AAS GK FCISRV+VGLDAAAVREAV KV+++KG+ MVFS DETTNK VVCAGV EK
Sbjct: 908 EVAASEGKQFCISRVDVGLDAAAVREAVSKVLQKKGLSAMVFSIDETTNKVVVCAGVAEK 967
Query: 915 SDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAMKLR 972
D+SKQLEVSEWLTAAL+PL GRCGKGKGGLA+GQGT+ + AM+LAAEFA MKLR
Sbjct: 968 GDKSKQLEVSEWLTAALKPLNGRCGKGKGGLATGQGTEGVHLDAAMNLAAEFAQMKLR 1025
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225423779|ref|XP_002277341.1| PREDICTED: alanyl-tRNA synthetase-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449461691|ref|XP_004148575.1| PREDICTED: alanine--tRNA ligase-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449508396|ref|XP_004163302.1| PREDICTED: LOW QUALITY PROTEIN: alanine--tRNA ligase-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297737260|emb|CBI26461.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|30694735|ref|NP_175439.2| Alanyl-tRNA synthetase [Arabidopsis thaliana] gi|21542451|sp|P36428.3|SYA_ARATH RecName: Full=Alanine--tRNA ligase; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS; Flags: Precursor gi|332194403|gb|AEE32524.1| Alanyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297852712|ref|XP_002894237.1| cytosolic tRNA-Ala synthetase [Arabidopsis lyrata subsp. lyrata] gi|297340079|gb|EFH70496.1| cytosolic tRNA-Ala synthetase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|5734779|gb|AAD50044.1|AC007980_9 cytosolic tRNA-Ala synthetase [Arabidopsis thaliana] gi|27311841|gb|AAO00886.1| Unknown protein [Arabidopsis thaliana] gi|31711780|gb|AAP68246.1| At1g50200 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|334183197|ref|NP_001185186.1| Alanyl-tRNA synthetase [Arabidopsis thaliana] gi|332194404|gb|AEE32525.1| Alanyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|1673365|emb|CAA80380.1| mitochondrial tRNA-Ala synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 972 | ||||||
| TAIR|locus:2011962 | 1003 | ALATS "Alanyl-tRNA synthetase" | 0.835 | 0.809 | 0.788 | 0.0 | |
| DICTYBASE|DDB_G0277823 | 946 | alaS "alanine-tRNA ligase" [Di | 0.790 | 0.811 | 0.558 | 1.2e-236 | |
| CGD|CAL0001447 | 969 | ALA1 [Candida albicans (taxid: | 0.820 | 0.823 | 0.536 | 6.5e-234 | |
| UNIPROTKB|Q5A8K2 | 969 | ALA1 "Alanine--tRNA ligase" [C | 0.820 | 0.823 | 0.536 | 6.5e-234 | |
| SGD|S000005862 | 983 | ALA1 "Cytoplasmic and mitochon | 0.833 | 0.824 | 0.534 | 1.5e-232 | |
| RGD|1304832 | 968 | Aars "alanyl-tRNA synthetase" | 0.793 | 0.796 | 0.531 | 1.8e-225 | |
| MGI|MGI:2384560 | 968 | Aars "alanyl-tRNA synthetase" | 0.793 | 0.796 | 0.533 | 3.7e-225 | |
| UNIPROTKB|A6QLT9 | 968 | AARS "AARS protein" [Bos tauru | 0.769 | 0.772 | 0.543 | 1.2e-223 | |
| UNIPROTKB|P49588 | 968 | AARS "Alanine--tRNA ligase, cy | 0.793 | 0.796 | 0.530 | 3.6e-222 | |
| UNIPROTKB|F1P5J5 | 916 | AARS "Uncharacterized protein" | 0.792 | 0.840 | 0.533 | 2.5e-221 |
| TAIR|locus:2011962 ALATS "Alanyl-tRNA synthetase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 3411 (1205.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 640/812 (78%), Positives = 707/812 (87%)
Query: 17 ARVLLNPSLTLAVTNHHHSLISRFSASAVAAMPGADPQVVEWPATKVRDTFFKFFEDKNH 76
+RV + L +H S ++S+VA MPG++P +WPA +VRDT+ FF K H
Sbjct: 18 SRVFYSSHLRRPFFSHFRFSSSSSTSSSVAVMPGSEPSETQWPAKRVRDTYVDFFRGKGH 77
Query: 77 VNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136
W SSPVVP NDPTLLFANAGMNQYKPIFLGTADPNT+LSKL+RACNTQKCIRAGGKHN
Sbjct: 78 KFWPSSPVVPHNDPTLLFANAGMNQYKPIFLGTADPNTELSKLSRACNTQKCIRAGGKHN 137
Query: 137 DLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEK 196
DLDDVGKDTYHHTFFEMLGNWSFGDYFK EAIEWAWELLTKVY LP DR+YATYFGGDEK
Sbjct: 138 DLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIEWAWELLTKVYGLPTDRIYATYFGGDEK 197
Query: 197 AGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLV 256
AGL PDNEARDIWLK LP+ RVLPFGCKDNFWEMGDTGPCGPC+EIHYDR GNRDAASLV
Sbjct: 198 AGLQPDNEARDIWLKVLPSGRVLPFGCKDNFWEMGDTGPCGPCTEIHYDRIGNRDAASLV 257
Query: 257 NNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFM 316
NNDDPTC+EIWN+VFIQFNRESDGSLKPLPAKHVDTG+GFERLTS+LQNKMSNYDTDVFM
Sbjct: 258 NNDDPTCLEIWNLVFIQFNRESDGSLKPLPAKHVDTGMGFERLTSVLQNKMSNYDTDVFM 317
Query: 317 PIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVL 376
PIFD IQ+ATGARPYSGKVG +D D+VDMAYRVVADHIRTLSFAIADGS PGNEGREYVL
Sbjct: 318 PIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTLSFAIADGSRPGNEGREYVL 377
Query: 377 RRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQXXXXXXXXXXXXXXSFGK 436
RRILRRAVRYG E+LKA++GFFNGLV+ V++VMGDVF ELK+ SF K
Sbjct: 378 RRILRRAVRYGKEILKAEEGFFNGLVSSVIRVMGDVFTELKEHEKKITDIIKEEEASFCK 437
Query: 437 TLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAM 496
TL KGIEKF+KA Q VQG LSG DAFILWDTYGFPLDLTQLMAEERGLLVD++GFN AM
Sbjct: 438 TLAKGIEKFRKAGQAVQGNTLSGDDAFILWDTYGFPLDLTQLMAEERGLLVDVDGFNKAM 497
Query: 497 DEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGS 556
+EARERSRSAQNKQAGGAIVMDADAT+ LHK GV ATDDSFK+IWFQDH+S +KAIYTGS
Sbjct: 498 EEARERSRSAQNKQAGGAIVMDADATSTLHKAGVSATDDSFKYIWFQDHESELKAIYTGS 557
Query: 557 EFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSL 616
F+ES + VG+VL S+SFYAEQGGQIFD G IEG FG+F V NVQI+GGFV+HIG L
Sbjct: 558 TFLESSAASDNVGLVLGSTSFYAEQGGQIFDTGLIEGSFGTFNVCNVQIFGGFVLHIGYL 617
Query: 617 TEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLR 676
++ G SVG++VICKVDY+RRKLIAPNHTCTHMLN+AL+EVLGDH+DQKGS+VLPEKLR
Sbjct: 618 SKETGEVSVGDKVICKVDYERRKLIAPNHTCTHMLNYALKEVLGDHIDQKGSIVLPEKLR 677
Query: 677 FDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVR 736
FDFSHGKPVDPE LRRIESIVN+QIK ELDVFSKEA L+EAK I GLRAVFGEVYPDPVR
Sbjct: 678 FDFSHGKPVDPEDLRRIESIVNKQIKDELDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVR 737
Query: 737 VVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAV 796
VV+IGRKVEDLLADPEN EW +S+E CGGTH++NTREA+AFALLSEEGIAKGIRR+TAV
Sbjct: 738 VVSIGRKVEDLLADPENNEWSLLSSEFCGGTHITNTREAKAFALLSEEGIAKGIRRVTAV 797
Query: 797 TTGLAYKAFEAACSLEKEVDDASKIEGSLLEK 828
TT A+ A AA LE+EV+DAS+ EGS LEK
Sbjct: 798 TTECAFDALNAASLLEREVEDASRAEGSALEK 829
|
|
| DICTYBASE|DDB_G0277823 alaS "alanine-tRNA ligase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| CGD|CAL0001447 ALA1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5A8K2 ALA1 "Alanine--tRNA ligase" [Candida albicans SC5314 (taxid:237561)] | Back alignment and assigned GO terms |
|---|
| SGD|S000005862 ALA1 "Cytoplasmic and mitochondrial alanyl-tRNA synthetase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
| RGD|1304832 Aars "alanyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2384560 Aars "alanyl-tRNA synthetase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A6QLT9 AARS "AARS protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P49588 AARS "Alanine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1P5J5 AARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7UBU3 | SYA_SHIFL | 6, ., 1, ., 1, ., 7 | 0.3930 | 0.8487 | 0.9417 | yes | no |
| Q5E7G5 | SYA_VIBF1 | 6, ., 1, ., 1, ., 7 | 0.3986 | 0.8518 | 0.9639 | yes | no |
| P36428 | SYA_ARATH | 6, ., 1, ., 1, ., 7 | 0.7836 | 0.9537 | 0.9242 | yes | no |
| A8ANQ1 | SYA_CITK8 | 6, ., 1, ., 1, ., 7 | 0.3934 | 0.8497 | 0.944 | yes | no |
| O13914 | SYA_SCHPO | 6, ., 1, ., 1, ., 7 | 0.4865 | 0.9382 | 0.9509 | yes | no |
| A7ZQC5 | SYA_ECO24 | 6, ., 1, ., 1, ., 7 | 0.3941 | 0.8487 | 0.9417 | yes | no |
| O01541 | SYAC_CAEEL | 6, ., 1, ., 1, ., 7 | 0.4778 | 0.9228 | 0.9266 | yes | no |
| A6VA71 | SYA_PSEA7 | 6, ., 1, ., 1, ., 7 | 0.4140 | 0.8713 | 0.9691 | yes | no |
| Q87LR3 | SYA_VIBPA | 6, ., 1, ., 1, ., 7 | 0.4093 | 0.8446 | 0.9546 | yes | no |
| B1LQ15 | SYA_ECOSM | 6, ., 1, ., 1, ., 7 | 0.3930 | 0.8487 | 0.9417 | yes | no |
| Q5RC02 | SYAC_PONAB | 6, ., 1, ., 1, ., 7 | 0.4844 | 0.9290 | 0.9328 | yes | no |
| Q8BGQ7 | SYAC_MOUSE | 6, ., 1, ., 1, ., 7 | 0.4876 | 0.9269 | 0.9307 | yes | no |
| A4XWE2 | SYA_PSEMY | 6, ., 1, ., 1, ., 7 | 0.4019 | 0.8703 | 0.9679 | yes | no |
| A1BD33 | SYA_CHLPD | 6, ., 1, ., 1, ., 7 | 0.4111 | 0.8662 | 0.9481 | yes | no |
| Q02I63 | SYA_PSEAB | 6, ., 1, ., 1, ., 7 | 0.4110 | 0.8693 | 0.9668 | yes | no |
| Q7MHR6 | SYA_VIBVY | 6, ., 1, ., 1, ., 7 | 0.4004 | 0.8518 | 0.9627 | yes | no |
| Q9VLM8 | SYAC_DROME | 6, ., 1, ., 1, ., 7 | 0.4567 | 0.9279 | 0.9337 | yes | no |
| Q54Y20 | SYAC_DICDI | 6, ., 1, ., 1, ., 7 | 0.5010 | 0.9269 | 0.9524 | yes | no |
| P40825 | SYA_YEAST | 6, ., 1, ., 1, ., 7 | 0.5128 | 0.8765 | 0.8667 | yes | no |
| P50475 | SYAC_RAT | 6, ., 1, ., 1, ., 7 | 0.4865 | 0.9269 | 0.9307 | yes | no |
| B1XCM5 | SYA_ECODH | 6, ., 1, ., 1, ., 7 | 0.3941 | 0.8487 | 0.9417 | yes | no |
| A4VJB3 | SYA_PSEU5 | 6, ., 1, ., 1, ., 7 | 0.4027 | 0.8724 | 0.9702 | yes | no |
| Q1R804 | SYA_ECOUT | 6, ., 1, ., 1, ., 7 | 0.3941 | 0.8487 | 0.9417 | yes | no |
| Q0TEI3 | SYA_ECOL5 | 6, ., 1, ., 1, ., 7 | 0.3941 | 0.8487 | 0.9417 | yes | no |
| B1IUY2 | SYA_ECOLC | 6, ., 1, ., 1, ., 7 | 0.3941 | 0.8487 | 0.9417 | yes | no |
| Q3YYG6 | SYA_SHISS | 6, ., 1, ., 1, ., 7 | 0.3941 | 0.8487 | 0.9417 | yes | no |
| A7MYT5 | SYA_VIBHB | 6, ., 1, ., 1, ., 7 | 0.4054 | 0.8508 | 0.9560 | yes | no |
| Q11V49 | SYA_CYTH3 | 6, ., 1, ., 1, ., 7 | 0.4188 | 0.8209 | 0.9099 | yes | no |
| Q32CN1 | SYA_SHIDS | 6, ., 1, ., 1, ., 7 | 0.3930 | 0.8487 | 0.9417 | yes | no |
| Q9I553 | SYA_PSEAE | 6, ., 1, ., 1, ., 7 | 0.4121 | 0.8693 | 0.9668 | yes | no |
| A1AEN7 | SYA_ECOK1 | 6, ., 1, ., 1, ., 7 | 0.3941 | 0.8487 | 0.9417 | yes | no |
| B2U049 | SYA_SHIB3 | 6, ., 1, ., 1, ., 7 | 0.3941 | 0.8487 | 0.9417 | yes | no |
| Q0T1C3 | SYA_SHIF8 | 6, ., 1, ., 1, ., 7 | 0.3930 | 0.8487 | 0.9417 | yes | no |
| A8A3H4 | SYA_ECOHS | 6, ., 1, ., 1, ., 7 | 0.3941 | 0.8487 | 0.9417 | yes | no |
| Q5AQL1 | SYA_EMENI | 6, ., 1, ., 1, ., 7 | 0.4827 | 0.9269 | 0.9375 | yes | no |
| P49588 | SYAC_HUMAN | 6, ., 1, ., 1, ., 7 | 0.4844 | 0.9290 | 0.9328 | yes | no |
| Q8DC49 | SYA_VIBVU | 6, ., 1, ., 1, ., 7 | 0.3993 | 0.8518 | 0.9627 | yes | no |
| A8GA09 | SYA_SERP5 | 6, ., 1, ., 1, ., 7 | 0.3875 | 0.8693 | 0.9657 | yes | no |
| Q6LMU3 | SYA_PHOPR | 6, ., 1, ., 1, ., 7 | 0.4023 | 0.8693 | 0.9679 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.7 | 0.979 |
| 3rd Layer | 6.1.1 | 0.983 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 972 | |||
| PLN02900 | 936 | PLN02900, PLN02900, alanyl-tRNA synthetase | 0.0 | |
| PRK00252 | 865 | PRK00252, alaS, alanyl-tRNA synthetase; Reviewed | 0.0 | |
| COG0013 | 879 | COG0013, AlaS, Alanyl-tRNA synthetase [Translation | 0.0 | |
| pfam01411 | 551 | pfam01411, tRNA-synt_2c, tRNA synthetases class II | 0.0 | |
| TIGR00344 | 851 | TIGR00344, alaS, alanine--tRNA ligase | 0.0 | |
| cd00673 | 232 | cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS | 1e-132 | |
| PRK01584 | 594 | PRK01584, PRK01584, alanyl-tRNA synthetase; Provis | 1e-118 | |
| PRK13902 | 900 | PRK13902, alaS, alanyl-tRNA synthetase; Provisiona | 8e-93 | |
| TIGR03683 | 902 | TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase | 4e-89 | |
| PRK01584 | 594 | PRK01584, PRK01584, alanyl-tRNA synthetase; Provis | 1e-33 | |
| COG2872 | 241 | COG2872, COG2872, Predicted metal-dependent hydrol | 7e-28 | |
| smart00863 | 43 | smart00863, tRNA_SAD, Threonyl and Alanyl tRNA syn | 8e-13 | |
| pfam07973 | 44 | pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synt | 1e-12 | |
| PLN02961 | 223 | PLN02961, PLN02961, alanine-tRNA ligase | 2e-12 | |
| PRK00413 | 638 | PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | 3e-05 | |
| PRK12305 | 575 | PRK12305, thrS, threonyl-tRNA synthetase; Reviewed | 2e-04 |
| >gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 1592 bits (4125), Expect = 0.0
Identities = 616/957 (64%), Positives = 706/957 (73%), Gaps = 56/957 (5%)
Query: 48 MPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL 107
MP D EWP ++R TF FFE K H SSP+VPV+DPTLLF NAGMNQ+KPIFL
Sbjct: 1 MPEDDAPEKEWPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFL 60
Query: 108 GTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEA 167
GTADPNT L KL RA NTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFK EA
Sbjct: 61 GTADPNTPLRKLPRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEA 120
Query: 168 IEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNF 227
I WAWELLTKVY LPADRLYATYFGGDEK APD+EAR IWL +LP RVLPFGCKDNF
Sbjct: 121 IGWAWELLTKVYGLPADRLYATYFGGDEK--QAPDDEARAIWLDYLPEERVLPFGCKDNF 178
Query: 228 WEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA 287
WEMGDTGPCGPCSEIHYDR G RDAA LVNNDDP IEIWN+VFIQFNRE+DGSLKPLPA
Sbjct: 179 WEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPA 238
Query: 288 KHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAY 347
KHVDTG+G ERL SILQNK SNYDTD+FMPIFDAIQ+ATGARPY+GKVGA+D D+VDMAY
Sbjct: 239 KHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAY 298
Query: 348 RVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVK 407
RVVADHIRTLSFAIADG P NEGR YVLRR+LRRAVRYG +L A++GFF LV +VV+
Sbjct: 299 RVVADHIRTLSFAIADGVVPSNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVE 358
Query: 408 VMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFI 464
+ GDVFPE+K+ E I EIIA EE SFGKTL KGIEKFKKA + G VLSG+DAF+
Sbjct: 359 LSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKKALAAAKANGGPVLSGKDAFL 418
Query: 465 LWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524
L+DTYGFP+DLT+LMAEERG+ VD+EGF AM+EARERSR+A K GGAI + A+AT+
Sbjct: 419 LYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGGAIELAAEATSW 478
Query: 525 LHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQ 584
L K+GV ATDD K+ W DH++V+KAI TG F+ESV G+EVGIVL +SFYAE GGQ
Sbjct: 479 LQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQ 538
Query: 585 IFDEGFIEGLFG-SFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAP 643
I D G +EG G V +VQ GGFV+HIG++TE G SVG+ V CKVDYDRR+ IAP
Sbjct: 539 IGDTGVLEGSGGAVVEVSDVQKAGGFVLHIGTVTE--GSVSVGDAVTCKVDYDRRRRIAP 596
Query: 644 NHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKA 703
NHT TH+LN AL+EVLGDHVDQKGS+V EKLRFDFSHGKP+ PE LR +ES+VNE I
Sbjct: 597 NHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKPMTPEELREVESLVNEWIGD 656
Query: 704 ELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAEL 763
L V +KE LA+AK INGLRAVFGE YPDPVRVV++G S EL
Sbjct: 657 ALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVGGV---------------YSMEL 701
Query: 764 CGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEG 823
CGGTH+SNT EAEAF LLSEEGIAKGIRRITAVT G A +A AA SLE+E+D A K+EG
Sbjct: 702 CGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERELDSALKVEG 761
Query: 824 SLLEK------------------------------NQVRKAQKKVAEENLQKAVKVATET 853
S LEK ++R AQK+ A + AV ATE
Sbjct: 762 SDLEKKVASLKSRVDAAVIPAAKKEEIRARVSALQKELRAAQKEAAALRAKLAVAKATEL 821
Query: 854 AEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQK-GMPVMVFSTDETTNKAVVCAGVP 912
A A S GK ++R++VG+DAAA++EA KVI + +V S+DE K + A VP
Sbjct: 822 ASKALSAGKSVLVARLDVGVDAAALKEAAEKVIAKLGDPAAVVLSSDEEKGKVSLVAAVP 881
Query: 913 EKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAAM 969
+ K L+ +WL A+ L G G GK G A GQG DA ++ A++ A FA
Sbjct: 882 PGVVK-KGLKAGKWL-GAIAKLCGGGGGGKPGFAQGQGRDAEKLDAALEKARAFAVA 936
|
Length = 936 |
| >gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) | Back alignment and domain information |
|---|
| >gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase | Back alignment and domain information |
|---|
| >gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase | Back alignment and domain information |
|---|
| >gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
| >gnl|CDD|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
| >gnl|CDD|178546 PLN02961, PLN02961, alanine-tRNA ligase | Back alignment and domain information |
|---|
| >gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 972 | |||
| PLN02900 | 936 | alanyl-tRNA synthetase | 100.0 | |
| COG0013 | 879 | AlaS Alanyl-tRNA synthetase [Translation, ribosoma | 100.0 | |
| KOG0188 | 895 | consensus Alanyl-tRNA synthetase [Translation, rib | 100.0 | |
| TIGR00344 | 851 | alaS alanine--tRNA ligase. The model describes ala | 100.0 | |
| PRK00252 | 865 | alaS alanyl-tRNA synthetase; Reviewed | 100.0 | |
| TIGR03683 | 902 | A-tRNA_syn_arch alanyl-tRNA synthetase. This famil | 100.0 | |
| PRK13902 | 900 | alaS alanyl-tRNA synthetase; Provisional | 100.0 | |
| PRK01584 | 594 | alanyl-tRNA synthetase; Provisional | 100.0 | |
| PF01411 | 552 | tRNA-synt_2c: tRNA synthetases class II (A); Inter | 100.0 | |
| cd00673 | 232 | AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II | 100.0 | |
| COG2872 | 241 | Predicted metal-dependent hydrolases related to al | 100.0 | |
| PLN02961 | 223 | alanine-tRNA ligase | 100.0 | |
| KOG2105 | 415 | consensus Predicted metal-dependent hydrolase, con | 100.0 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 99.76 | |
| PLN02837 | 614 | threonine-tRNA ligase | 99.74 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 99.71 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 99.65 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 99.56 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 99.43 | |
| PF07973 | 44 | tRNA_SAD: Threonyl and Alanyl tRNA synthetase seco | 99.37 | |
| smart00863 | 44 | tRNA_SAD Threonyl and Alanyl tRNA synthetase secon | 99.09 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 99.07 | |
| PF02272 | 68 | DHHA1: DHHA1 domain; InterPro: IPR003156 This doma | 97.85 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 96.05 | |
| PRK09348 | 283 | glyQ glycyl-tRNA synthetase subunit alpha; Validat | 95.1 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 94.22 | |
| TIGR00388 | 293 | glyQ glycyl-tRNA synthetase, tetrameric type, alph | 94.06 | |
| KOG1637 | 560 | consensus Threonyl-tRNA synthetase [Translation, r | 93.85 | |
| cd00733 | 279 | GlyRS_alpha_core Class II Glycyl-tRNA synthetase ( | 90.52 | |
| COG0752 | 298 | GlyQ Glycyl-tRNA synthetase, alpha subunit [Transl | 89.15 | |
| PRK14908 | 1000 | glycyl-tRNA synthetase; Provisional | 88.56 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 88.32 | |
| TIGR00458 | 428 | aspS_arch aspartyl-tRNA synthetase, archaeal type. | 85.85 | |
| TIGR00462 | 304 | genX lysyl-tRNA synthetase-like protein GenX. Many | 84.31 | |
| PRK03932 | 450 | asnC asparaginyl-tRNA synthetase; Validated | 84.02 | |
| cd00776 | 322 | AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class | 83.44 | |
| PF02091 | 284 | tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit | 81.41 | |
| cd00670 | 235 | Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t | 80.78 | |
| PRK00488 | 339 | pheS phenylalanyl-tRNA synthetase subunit alpha; V | 80.22 |
| >PLN02900 alanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-248 Score=2244.93 Aligned_cols=899 Identities=68% Similarity=1.068 Sum_probs=816.7
Q ss_pred ccCCCCCCcCCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccccccccCCCCccccccccccccc
Q 002074 48 MPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQK 127 (972)
Q Consensus 48 ~~~~~~~~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~~flG~~~p~~~~~~~~r~~~~Qk 127 (972)
||-.|...++|+++|||++||+||++|||++||||||||+||||||||||||+||||||+|..+|++++++|+|+|||||
T Consensus 1 ~~~~~~~~~~~~~~eiR~~Fl~FF~~~gH~~v~s~slvp~~dptllftnAGm~~Fk~~f~G~~~p~~~~~~~~R~~~~Qk 80 (936)
T PLN02900 1 MPEDDAPEKEWPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQK 80 (936)
T ss_pred CCCCccccCCCCHHHHHHHHHHHHHhCCCEEeCCCCcCCCCCCCeeeeecchhhhhhhhcCCCCCCCCCCCCCceeeecc
Confidence 78888888999999999999999999999999999999999999999999999999999999999777778999999999
Q ss_pred ccccCCCCCCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHH
Q 002074 128 CIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARD 207 (972)
Q Consensus 128 CiR~gGkhnDl~~VG~t~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~~D~E~~~ 207 (972)
|||+|||||||||||+|+|||||||||||||||||||+|||.|||||||++|||||+|||||||++|+.+ |+|+||++
T Consensus 81 CiR~gGKHnDlenVG~t~rHhTfFEMlGnfSfgdYfK~eaI~~awe~lT~~l~i~~~~l~vTv~~~D~~~--~~d~Ea~~ 158 (936)
T PLN02900 81 CIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTKVYGLPADRLYATYFGGDEKQ--APDDEARA 158 (936)
T ss_pred cccCCCCCCCHhhccCCCCchHHHHhhhccchhhhhHHHHHHHHHHHHHHhcCCCHHHEEEEEeCCCCCc--CCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874 99999999
Q ss_pred HHHhhCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeEEEeeeeccccccCCCCccccCCC
Q 002074 208 IWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA 287 (972)
Q Consensus 208 iW~~~~~~~~I~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~ 287 (972)
||+++||++||+++|.+||||+||+||||||||||||||++++++.++++.||+|||||||||||||||+.||+|+|||+
T Consensus 159 iW~~~~~~~rI~~~~~~dNfW~~G~tGpcGPcsEi~yD~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~ 238 (936)
T PLN02900 159 IWLDYLPEERVLPFGCKDNFWEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPA 238 (936)
T ss_pred HHHHhCCHHHeecCCcccCCccCCCCcCCCCCeEEEEecCCccCccccCCCCCCCEEEEeeeeeeeeeecCCCceeeCCC
Confidence 99999999999999999999999999999999999999998877766677789999999999999999999999999999
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCccccccchhhhhhhhhhheeeeecCCCcc
Q 002074 288 KHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCP 367 (972)
Q Consensus 288 k~IDTGmGLERl~~vlq~~~snydtdlf~pii~~i~~~~~~~~y~~~~~~~~~~~~~~a~rviaDH~R~~~f~i~DGv~P 367 (972)
||||||||||||+|||||++||||||+|.|||+.|++++|+++|+|.....+.+..++||||||||+||++|||+||++|
T Consensus 239 ~~IDTGmGLERl~~vlqg~~snydtDlf~pii~~i~~~~~~~~~~~~~y~~~~~~~~~a~rviaDH~R~~~f~i~DGv~P 318 (936)
T PLN02900 239 KHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAYRVVADHIRTLSFAIADGVVP 318 (936)
T ss_pred CeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCccccccccccccccceeeeeehhhHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999998888875533232456789999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHHHHhHhhhCCCcchhhhHHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002074 368 GNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKK 447 (972)
Q Consensus 368 sn~grgYvlRrilRRa~~~~~~~l~~~~~~l~~lv~~v~~~m~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~g~~~l~~ 447 (972)
||+|||||||||||||+|+++.+||++.|||++||+.|++.|++.||||.++++.|++||..||++|.+||++|+++|++
T Consensus 319 sN~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~ 398 (936)
T PLN02900 319 SNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKK 398 (936)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999644899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc---CCCCChhhhhhhhccCCCChHHHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchhHHHH
Q 002074 448 AAQDVQ---GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524 (972)
Q Consensus 448 ~i~~~~---~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~ 524 (972)
++++.+ ++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++.........+...+..
T Consensus 399 ~i~~~~~~~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~F~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 478 (936)
T PLN02900 399 ALAAAKANGGPVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGGAIELAAEATSW 478 (936)
T ss_pred HHHHHhhcCCCcCCHHHHHHHHhccCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHHhhhhccccccccccHHHHHH
Confidence 998764 36799999999999999999999999999999999999999999999999876532221111223233344
Q ss_pred HhhcCCCCcccccCcccceeeeEEEEEEEeCCeeeeeecCCCeEEEEeccccccccCCCccCceEEEEeCCe-eEEEEeE
Q 002074 525 LHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFG-SFYVRNV 603 (972)
Q Consensus 525 l~~~~~~~T~d~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~-~~~V~dv 603 (972)
+....++++++|.||++..+++|+|++++.+++.++++..++.++|+||+|+|||||||||+|+|+|..+++ .+.|.+|
T Consensus 479 ~~~~~~~~~t~f~gY~~~~~~~~~v~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~~~~~V~dv 558 (936)
T PLN02900 479 LQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQIGDTGVLEGSGGAVVEVSDV 558 (936)
T ss_pred HHhccCCCCCcccccccCCccceEEEEEEECCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEecCCCCEEEEEEE
Confidence 433223444469999944338999999998888899998888899999999999999999999999987666 7999999
Q ss_pred EEECCEEEEEEEeecCCccCCCCCEEEEEEchhhhhhHhhhhhHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCC
Q 002074 604 QIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGK 683 (972)
Q Consensus 604 ~~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~ 683 (972)
++.+|.++|++.+.. +++.+|++|.+.|||+||+++|++|||||||++||+++||.++.|.|++++++++||||+++.
T Consensus 559 ~k~~g~i~H~~~~~~--g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~ 636 (936)
T PLN02900 559 QKAGGFVLHIGTVTE--GSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGK 636 (936)
T ss_pred EEECCEEEEEEEecc--CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCCC
Confidence 999999999987654 678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHHhhccchhhcCCcCCCCeEEEEECCcccccccCCCCccccce-eee
Q 002074 684 PVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSI-SAE 762 (972)
Q Consensus 684 ~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eeA~~~~glr~~f~e~y~~~VRVV~Ig~~~~~~l~~~~~~~~~~~-d~e 762 (972)
++|++++.+||+.||++|++|+||++.+++++||+++.|++++|+++|++.||||+|+ ++ |.+
T Consensus 637 ~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~~~~f~e~y~~~VRVV~Ig----------------~~~d~e 700 (936)
T PLN02900 637 PMTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVG----------------GVYSME 700 (936)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHhhccChHhhcCCCCCCcEEEEEEC----------------Ccccee
Confidence 9999999999999999999999999999999999997899999999999999999998 56 999
Q ss_pred eccCcccccccccccEEEEeEeeecCCeEEEEEEeCHHHHHHHHHHHHHHHHHHHhhcc---------------------
Q 002074 763 LCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKI--------------------- 821 (972)
Q Consensus 763 lCgGTHV~nTgeIg~fkI~~~~~~~~Gv~RI~~vtG~~A~~~~~~~~~~~~~l~~ll~~--------------------- 821 (972)
+||||||.||||||.|+|++++++++|++||+|+||.+|+++++....++++++.++++
T Consensus 701 lCGGTHV~nTgeIG~fkIls~~~~~~G~rRIe~v~G~~A~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 780 (936)
T PLN02900 701 LCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERELDSALKVEGSDLEKKVASLKSRVDAAVI 780 (936)
T ss_pred CCCCCcCCccccCceEEEEEEeeecCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999998
Q ss_pred ---cCChhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceEEEEecccCCHHHHHHHHHHHHhcc-CC
Q 002074 822 ---EGSLLEK------NQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVIEQK-GM 891 (972)
Q Consensus 822 ---~~~~l~~------~~~k~~~ke~~~l~~~~a~~~~~~l~~~~~~~g~~~vv~~~~~~~d~~~L~~~a~~l~~~~-~~ 891 (972)
++.++.. +++++++|++++++.+++...++.+.+++...+..+++..++.+.+++.|+++++.++++. +.
T Consensus 781 ~~~~~~el~~~v~~l~~e~k~l~k~~~~l~~~la~~~~~~l~~~~~~~~~~~~v~~~~~~~d~~~Lr~la~~l~~~~~~~ 860 (936)
T PLN02900 781 PAAKKEEIRARVSALQKELRAAQKEAAALRAKLAVAKATELASKALSAGKSVLVARLDVGVDAAALKEAAEKVIAKLGDP 860 (936)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEEecCCCCHHHHHHHHHHHHhhcCCc
Confidence 4444433 6788888888888888888888887766554444677777754579999999999998853 43
Q ss_pred cEEEEEeeCCCCeEEEEEecCCcccccccccHHHHHHHHhhhcCCccCCCCCCCeeeecCCcCCHHHHHHHHHHHHH
Q 002074 892 PVMVFSTDETTNKAVVCAGVPEKSDQSKQLEVSEWLTAALQPLKGRCGKGKGGLASGQGTDAAQVTPAMDLAAEFAA 968 (972)
Q Consensus 892 ~vvll~~~~~~~k~~~~~~v~~~~~~~~~~~a~~l~k~v~~~lgGkGGgGk~~~AQG~g~~~~~l~~al~~~~~~l~ 968 (972)
.+++++...+++++.+++++++++ ..++++|++|+|++++.+||||| |+|.||||+|++++++++|++.++++++
T Consensus 861 ~vvl~~~~~~~~k~~~~~~~~~~~-~~~~~~A~~lvk~~~~~~gGkGG-G~~~~AQggg~~~~~l~~al~~~~~~~~ 935 (936)
T PLN02900 861 AAVVLSSDEEKGKVSLVAAVPPGV-VKKGLKAGKWLGAIAKLCGGGGG-GKPGFAQGQGRDAEKLDAALEKARAFAV 935 (936)
T ss_pred eEEEEEecCCCCeEEEEEEEChHH-hhcCCCHHHHHHHHHHhcCCCCC-CcHHHeeeCCCCHHHHHHHHHHHHHHHh
Confidence 566665432457888888888776 55679999999999999999999 9999999999999999999999999875
|
|
| >COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR00344 alaS alanine--tRNA ligase | Back alignment and domain information |
|---|
| >PRK00252 alaS alanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PRK13902 alaS alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK01584 alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] | Back alignment and domain information |
|---|
| >PLN02961 alanine-tRNA ligase | Back alignment and domain information |
|---|
| >KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only] | Back alignment and domain information |
|---|
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer | Back alignment and domain information |
|---|
| >smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF02272 DHHA1: DHHA1 domain; InterPro: IPR003156 This domain is often found adjacent to the DHH domain, found in the RecJ-like phosphoesterase family IPR001667 from INTERPRO, and is called DHHA1 for DHH associated domain | Back alignment and domain information |
|---|
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
| >PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit | Back alignment and domain information |
|---|
| >KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain | Back alignment and domain information |
|---|
| >COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK14908 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
| >TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type | Back alignment and domain information |
|---|
| >TIGR00462 genX lysyl-tRNA synthetase-like protein GenX | Back alignment and domain information |
|---|
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
| >cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
| >PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
| >PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 972 | ||||
| 1yfr_A | 465 | Crystal Structure Of Alanyl-Trna Synthetase In Comp | 1e-110 | ||
| 3htz_A | 464 | Crystal Structure Of The Catalytic Fragment Of Alan | 1e-110 | ||
| 3hxu_A | 441 | Crystal Structure Of Catalytic Fragment Of E. Coli | 1e-108 | ||
| 3hxz_A | 441 | Crystal Structure Of Catalytic Fragment Of E. Coli | 1e-108 | ||
| 1riq_A | 465 | The Crystal Structure Of The Catalytic Fragment Of | 2e-99 | ||
| 2zzf_A | 752 | Crystal Structure Of Alanyl-Trna Synthetase Without | 1e-42 | ||
| 2zze_A | 752 | Crystal Structure Of Alanyl-Trna Synthetase Without | 1e-32 | ||
| 2ztg_A | 739 | Crystal Structure Of Archaeoglobus Fulgidus Alanyl- | 5e-27 | ||
| 2e1b_A | 216 | Crystal Structure Of The Alax-M Trans-Editing Enzym | 9e-08 |
| >pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex With Atp And Magnesium Length = 465 | Back alignment and structure |
|
| >pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna Synthetase In Complex With L-Serine: Re-Refined Length = 464 | Back alignment and structure |
| >pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Alasa Length = 441 | Back alignment and structure |
| >pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa Length = 441 | Back alignment and structure |
| >pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The Alanyl-Trna Synthetase Length = 465 | Back alignment and structure |
| >pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain Length = 752 | Back alignment and structure |
| >pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain In Lysine-Methylated Form Length = 752 | Back alignment and structure |
| >pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking The C-Terminal Dimerization Domain In Complex With Ala-Sa Length = 739 | Back alignment and structure |
| >pdb|2E1B|A Chain A, Crystal Structure Of The Alax-M Trans-Editing Enzyme From Pyrococcus Horikoshii Length = 216 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 | Back alignment and structure |
|---|
Score = 717 bits (1852), Expect = 0.0
Identities = 165/773 (21%), Positives = 280/773 (36%), Gaps = 139/773 (17%)
Query: 63 VRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTR 121
+R+ + FFE + H + PVV + A + ++P G A P
Sbjct: 65 MREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPP-----PANP 119
Query: 122 ACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD-----YFKNEAIEWAWELLT 176
+Q CIR +DLD VG+ H T FEM+ + +F Y+KNE + + ELL
Sbjct: 120 LTISQPCIRL----DDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELLN 175
Query: 177 KVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPC 236
++ + + + K+ W G G
Sbjct: 176 ELG-VKKEDIVY-----------------------------------KEEPWAGG--GNA 197
Query: 237 GPCSEIHYDRTG---------NRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA 287
GPC E + ++ N +
Sbjct: 198 GPCLEAIVGGLEVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLERFVWASKGT 257
Query: 288 KHVDTGLGFERLTSILQ--NKMSNYDTDVFMPIFDAIQQATG------------------ 327
V + E + +I+ N N + + I + G
Sbjct: 258 PTVYDAIFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRGERLNQLRKSVA 317
Query: 328 ARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYG 387
+ +ADH R + F + DG P N G Y+ R ++RR++R
Sbjct: 318 DTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLA 377
Query: 388 SEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKK 447
E L+ LV + K++G F + ++EI+ E+ + T+ KG ++
Sbjct: 378 EE-LEL-GLDLYDLVEMHKKILGFEFDVPL---STVQEILELEKERYRTTVSKGTRLVER 432
Query: 448 AAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIE-GFNNAMDEARERSRSA 506
+ K L D L+D++G P++L +A E+G V++ + + ++
Sbjct: 433 LVER--KKKLEKDDLIELYDSHGIPVELAVGIAAEKGAEVEMPKDIYAELAKRHSKAEKV 490
Query: 507 QNKQAGGAIVMDADATAALHKRGVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGN 566
Q K + + AT + +++ D T EF V+
Sbjct: 491 QEK--KITLQNEYPAT---------------EKLYYDD--------PTLLEFEAEVIGVE 525
Query: 567 EVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVG 626
++L S+FY E GGQ D G++ G F V +V G V+H+ + VG
Sbjct: 526 GDFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDVLEADGVVLHVVK----GAKPEVG 581
Query: 627 EEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVD 686
+V +D D R +H+ TH+L ++L++VLG+HV Q G+ K R D +H +
Sbjct: 582 TKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPS 641
Query: 687 PEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF--GEVYPDPVRVVAIGRKV 744
E ++ IE + N +I A + + EA+ G ++ G +RVV +G
Sbjct: 642 EEEIKEIEMLANREILANKPIKWEWMDRIEAERKFGF-RLYQGGVPPGRKIRVVQVG--- 697
Query: 745 EDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVT 797
+ CGGTH +T E +L E I G+ R
Sbjct: 698 --------------DDVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFEFAA 736
|
| >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 | Back alignment and structure |
|---|
| >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Length = 441 | Back alignment and structure |
|---|
| >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752 | Back alignment and structure |
|---|
| >2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Length = 216 | Back alignment and structure |
|---|
| >3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Length = 241 | Back alignment and structure |
|---|
| >1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Length = 157 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 | Back alignment and structure |
|---|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 972 | |||
| 2zze_A | 752 | Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML | 100.0 | |
| 2ztg_A | 739 | Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy | 100.0 | |
| 3hy0_A | 441 | Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 1yfs_A | 465 | Alanyl-tRNA synthetase; alpha-beta fold, helix-loo | 100.0 | |
| 3kew_A | 241 | DHHA1 domain protein; structural genomics, PSI-2, | 100.0 | |
| 2e1b_A | 216 | PH0108, 216AA long hypothetical alanyl-tRNA synthe | 100.0 | |
| 1v4p_A | 157 | Alanyl-tRNA synthetase; alanine-tRNA ligase, riken | 99.94 | |
| 1tke_A | 224 | Threonyl-tRNA synthetase; ligase; 1.46A {Escherich | 99.92 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 99.87 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 99.85 | |
| 2zvf_A | 171 | Alanyl-tRNA synthetase; C-terminal, oligomerizatio | 99.79 | |
| 3g98_A | 111 | Alanyl-tRNA synthetase; alpha and beta fold, amino | 99.58 | |
| 3rf1_A | 311 | Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA | 93.32 | |
| 1j5w_A | 298 | Glycyl-tRNA synthetase alpha chain; structural gen | 83.46 |
| >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-198 Score=1756.21 Aligned_cols=639 Identities=28% Similarity=0.453 Sum_probs=579.7
Q ss_pred CCCCCCcCCChHHHHHHHHHhhhhCC---CeeecCCCcccCCCCCcccccccccccccccc-cccCCCCccccccccccc
Q 002074 50 GADPQVVEWPATKVRDTFFKFFEDKN---HVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNT 125 (972)
Q Consensus 50 ~~~~~~~~~~~~eiR~~Fl~fF~~~g---H~~v~ssslvp~~dptllftnAGm~qfk~~fl-G~~~p~~~~~~~~r~~~~ 125 (972)
|..+..++||++|||++||+||++|| |++||||||||+||||||||||||+||||||+ |..+|+ ++|+|||
T Consensus 49 ~~~~~~~~~~~~eiR~~fl~fF~~kg~~~H~~v~s~~lvp~~dptllftnAGm~~fk~~f~~G~~~pp-----~~r~~~~ 123 (752)
T 2zze_A 49 GKPGIPRXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPP-----ANPLVIS 123 (752)
T ss_dssp TSCSSSSCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCS-----SSSEEEE
T ss_pred CCCcccccCCHHHHHHHHHHHHhccCCCcceEEeccCcccCCCCCeeeeecchhhhhHhhcCCCcCCC-----CCCcccc
Confidence 33356678999999999999999999 99999999999999999999999999999997 999886 5799999
Q ss_pred ccccccCCCCCCCCCCCCCCCcchhhhhccccccc-----cccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCC
Q 002074 126 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLA 200 (972)
Q Consensus 126 QkCiR~gGkhnDl~~VG~t~rHhTfFEMlGnfSfg-----dYfK~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~ 200 (972)
|||||+ |||||||+|+||||||||||||||| ||||+|||+|||||||++||||++||+ +
T Consensus 124 QkCiR~----~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~awe~lT~~~gl~~~ri~--~---------- 187 (752)
T 2zze_A 124 QPSIRF----TDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXMXPEDIT--F---------- 187 (752)
T ss_dssp EEEECC----TTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCCCGGGEE--E----------
T ss_pred ccceec----CcHhhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHHHHHHhhhhhcchhhee--e----------
Confidence 999996 7999999999999999999999999 999999999999999999999999994 2
Q ss_pred CcHHHHHHHHhhCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeEEEeeeecccc------
Q 002074 201 PDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQF------ 274 (972)
Q Consensus 201 ~D~E~~~iW~~~~~~~~I~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~------ 274 (972)
+||||+|| |||||||||||| + |||||||||||
T Consensus 188 -----------------------~dNfW~~G--GpcGPcsEI~~d---g--------------lEiwNlVFmq~~~~~~~ 225 (752)
T 2zze_A 188 -----------------------KENPWAGG--GNAGPAFEVLYR---G--------------LEVATLVFMQYXXAPEN 225 (752)
T ss_dssp -----------------------EECCEEET--TEEECEEEEEET---T--------------EEEEEEEEEEEEECCTT
T ss_pred -----------------------ccCcccCC--CCCCCceeEEEC---C--------------Eeeeeeeeeeecccccc
Confidence 69999999 999999999997 1 99999999999
Q ss_pred -------ccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCC
Q 002074 275 -------NRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVG 336 (972)
Q Consensus 275 -------~~~~~g~l~~Lp~k~IDTGmGLERl~~vlq~~~snydtdlf~pii~~i~~~~~~~-----------~y~~~~~ 336 (972)
|| ++|+|+|||+||||||||||||+|||||++||||| +|.|||++|++++|++ +|.|.++
T Consensus 226 ~~~~~~~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~~~g~~y~~~~~~~~~a~~~g~~~ 303 (752)
T 2zze_A 226 APQDQVVVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFD 303 (752)
T ss_dssp CCSCCEEET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHHHHTCCCCCHHHHHHHHHHHHTCC
T ss_pred ccccchhcc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHHhcCCCccchhhhhhhhhccccCC
Confidence 88 69999999999999999999999999999999999 9999999999999985 2334444
Q ss_pred CCccccc------------------------cchhhhhhhhhhheeeeecCCCccCCCCcchHHHHHHHHHHHHhHhhhC
Q 002074 337 ADDADKV------------------------DMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLK 392 (972)
Q Consensus 337 ~~~~~~~------------------------~~a~rviaDH~R~~~f~i~DGv~Psn~grgYvlRrilRRa~~~~~~~l~ 392 (972)
.++...+ +.++||||||+||++|||+||++|||+|||||||||||||+|+|+ +||
T Consensus 304 ~~~~~~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~GrGYvlRrilRRa~r~~~-~lg 382 (752)
T 2zze_A 304 IEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHLR-ELG 382 (752)
T ss_dssp SSSSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHHHHHHHHHHHHHHHH-HTT
T ss_pred ccchhhHHHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCccchhHHHHHHHHHHHHHHH-HhC
Confidence 2221111 468899999999999999999999999999999999999999995 799
Q ss_pred CCcchhhhHHHHHHHHhcccChhhHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCChhhhhhhhccC
Q 002074 393 AQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFILWDTY 469 (972)
Q Consensus 393 ~~~~~l~~lv~~v~~~m~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~g~~~l~~~i~~~~---~~~l~g~~af~LydTy 469 (972)
++.| |++|||.|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++++ ++.|||++||+|||||
T Consensus 383 ~~~~-l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~~~~~~l~g~~af~LyDTy 461 (752)
T 2zze_A 383 LEVP-LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESH 461 (752)
T ss_dssp CCCC-HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHH
T ss_pred CCcc-hhHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHhcc
Confidence 9999 99999999999999999999999999999999999999999999999999998764 3579999999999999
Q ss_pred CCChHHHHHHHHHcCceeChh-hHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcccccCcc--cceeee
Q 002074 470 GFPLDLTQLMAEERGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHK 546 (972)
Q Consensus 470 GfP~dlt~~ia~e~g~~vD~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~d~~~Y~--y~~~~~ 546 (972)
|||+|||++||+|+|++||++ +|+++|++||+++|++.. .. ..+ ...+ ...|+|+ +.+|+ |.++++
T Consensus 462 GfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~~--~~---~~~---~~~~--~~~~~T~-~l~Y~~~yl~~~~ 530 (752)
T 2zze_A 462 GLTPEIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKG--EE---LVD---FELL--KDLPDTR-RLYYEDPFMXEFD 530 (752)
T ss_dssp CCCHHHHHHHHTTSSCCCCCCTTHHHHHHGGGGCC------------CCC---SSSS--SSSCCCE-EHHHHCTTCCEEE
T ss_pred CCCHHHHHHHHHHcCCccCCcccHHHHHHHHHHHHhhccc--cc---chh---hHHh--ccCCCce-eecccCCccceEE
Confidence 999999999999999999999 899999999999886421 10 000 0011 1346674 77887 347899
Q ss_pred EEEEEEEeCCeeeeeecCCCeEEEEeccccccccCCCccCceEEEEeCCeeEEEEeEEEECCEEEEEEEeecCCccCCCC
Q 002074 547 SVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVG 626 (972)
Q Consensus 547 a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G 626 (972)
|+|+++.. .+||||+|||||||||||+|+|+|..++..+.|.||++.+|.++|.+.. . +.+++|
T Consensus 531 a~Vl~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~~-~--~~l~vG 594 (752)
T 2zze_A 531 AXVLRVIX-------------DWVILDATAFYPEGGGQPYDTGVLIVNGREVXVTNVQXVGXVIIHXVED-P--GAFXEG 594 (752)
T ss_dssp EEEEEEET-------------TEEEESEECSCCSBTTBCCCCEEEEETTEEEEEEEEEEETTEEEEEESC-G--GGCCTT
T ss_pred EEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCEEEEEEeeeecCcEEEEeccc-c--CccCcC
Confidence 99999973 3699999999999999999999998777789999999999999999874 3 678899
Q ss_pred CEEEEEEchhhhhhHhhhhhHHHHHHHHHHHHhCCceecccccccCCceEEEeeCCCCCCHHHHHHHHHHHHHHHHcCCC
Q 002074 627 EEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELD 706 (972)
Q Consensus 627 ~~V~~~VD~~rR~~~m~~HTAtHLLsaAL~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vNe~I~~n~p 706 (972)
++|.++|||+||+.+|++|||+|||++||+++||.+++|.|+++.++++||||++..++|++++++||++||++|++|+|
T Consensus 595 d~V~~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~lt~edL~~IE~~vNeiI~~nlp 674 (752)
T 2zze_A 595 MIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRX 674 (752)
T ss_dssp CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCB
T ss_pred CeEEEEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred EEEEEeCHHHHHhhccchhhc--CCcCCCCeEEEEECCcccccccCCCCccccceeeeeccCcccccccccccEEEEeEe
Q 002074 707 VFSKEATLAEAKCINGLRAVF--GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEE 784 (972)
Q Consensus 707 V~~~~~~~eeA~~~~glr~~f--~e~y~~~VRVV~Ig~~~~~~l~~~~~~~~~~~d~elCgGTHV~nTgeIg~fkI~~~~ 784 (972)
|++.+++++||+++.++ ++| +++|++.||||+|| ++|+++||||||+|||+||.|+|++++
T Consensus 675 V~~~~~s~eEA~~~~~~-~lf~~ge~ygd~VRVV~IG----------------d~svelCGGTHV~nTgeIG~fKIls~s 737 (752)
T 2zze_A 675 VTWEWLPRTTAEQXYGF-RLYQGGVVPGREIRVVXIE----------------DWDVQACGGTHLPSTGLVGPIXILRTE 737 (752)
T ss_dssp EEEEEEEHHHHHHHHCG-GGCSSCCCCSSEEEEEEET----------------TTEEEECCSCCCSBGGGGCCEEEEEEE
T ss_pred cceeecCHHHHhhcchh-hhhcCCCCCCCeEEEEEEC----------------CceeCCCCCCccCCHhHccEEEEEEEE
Confidence 99999999999998654 445 67888999999998 589999999999999999999999999
Q ss_pred eecCCeEEEEEEeCH
Q 002074 785 GIAKGIRRITAVTTG 799 (972)
Q Consensus 785 ~~~~Gv~RI~~vtG~ 799 (972)
++++|++||+|+||.
T Consensus 738 ~i~~GvrRIeavtG~ 752 (752)
T 2zze_A 738 RIQDGVERIIFACGE 752 (752)
T ss_dssp EEETTEEEEEEEECC
T ss_pred EEcCCEEEEEEEeCC
Confidence 999999999999994
|
| >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* | Back alignment and structure |
|---|
| >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A | Back alignment and structure |
|---|
| >3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} | Back alignment and structure |
|---|
| >2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 | Back alignment and structure |
|---|
| >1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A | Back alignment and structure |
|---|
| >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* | Back alignment and structure |
|---|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
| >2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A* | Back alignment and structure |
|---|
| >1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 972 | ||||
| d1riqa2 | 236 | d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) | 1e-90 | |
| d1riqa1 | 221 | a.203.1.1 (A:237-457) Putative anticodon-binding d | 1e-45 | |
| d2e1ba2 | 129 | d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C | 5e-27 | |
| d1v4pa_ | 151 | d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeo | 1e-23 | |
| d1nyra3 | 179 | d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrR | 3e-13 | |
| d1tkea2 | 162 | d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrR | 3e-12 | |
| d2e1ba1 | 87 | b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-t | 4e-12 |
| >d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Alanyl-tRNA synthetase (AlaRS) species: Aquifex aeolicus [TaxId: 63363]
Score = 286 bits (732), Expect = 1e-90
Identities = 124/253 (49%), Positives = 163/253 (64%), Gaps = 22/253 (8%)
Query: 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKL 119
A ++R+ F FFE K H KS+P+VP NDPTLLF NAGM +K +FLG
Sbjct: 4 AHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPY----- 58
Query: 120 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVY 179
RA + QKC+R GKHNDL+ VG + HHTFFEMLGN+SFGDYFK EAIE+AWE +T+V
Sbjct: 59 KRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVL 118
Query: 180 RLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRVLPFGCKDNFWEMGDTGPCG 237
+LP ++LY + + D EA IW + +P+ R+ G +DNFW+MGD GPCG
Sbjct: 119 KLPKEKLYVSVYKDD--------EEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCG 170
Query: 238 PCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297
P SEI+ DR D +EIWN+VF+Q+NR+ +G L PLP ++DTG+G E
Sbjct: 171 PSSEIYVDRGEE-------YEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLE 223
Query: 298 RLTSILQNKMSNY 310
R+ S+LQ K SN+
Sbjct: 224 RIASVLQGKNSNF 236
|
| >d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 221 | Back information, alignment and structure |
|---|
| >d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 129 | Back information, alignment and structure |
|---|
| >d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 151 | Back information, alignment and structure |
|---|
| >d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 179 | Back information, alignment and structure |
|---|
| >d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} Length = 162 | Back information, alignment and structure |
|---|
| >d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 87 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 972 | |||
| d1riqa2 | 236 | Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [ | 100.0 | |
| d1riqa1 | 221 | Putative anticodon-binding domain of alanyl-tRNA s | 100.0 | |
| d2e1ba2 | 129 | AlaX-M trans-editing enzyme, C-terminal domain {Py | 99.98 | |
| d1v4pa_ | 151 | Hypothetical protein PH0574 {Archaeon Pyrococcus h | 99.97 | |
| d1nyra3 | 179 | Threonyl-tRNA synthetase (ThrRS), second 'addition | 99.93 | |
| d1tkea2 | 162 | Threonyl-tRNA synthetase (ThrRS), second 'addition | 99.74 | |
| d2e1ba1 | 87 | AlaX-M trans-editing enzyme, N-terminal domain {Py | 99.58 | |
| d1j5wa_ | 281 | Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermo | 90.11 |
| >d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Alanyl-tRNA synthetase (AlaRS) species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=1.3e-110 Score=871.54 Aligned_cols=234 Identities=53% Similarity=1.010 Sum_probs=225.7
Q ss_pred CCChHHHHHHHHHhhhhCCCeeecCCCcccCCCCCcccccccccccccccccccCCCCcccccccccccccccccCCCCC
Q 002074 57 EWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136 (972)
Q Consensus 57 ~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dptllftnAGm~qfk~~flG~~~p~~~~~~~~r~~~~QkCiR~gGkhn 136 (972)
.|+++|||++||+||++|||++||||||||+||||||||||||+||||||+|.++|+ ++|+|++|||||+|||||
T Consensus 1 ~mt~~eiR~~Fl~FF~~~gH~~v~s~slvp~~DptlLFtnAGM~~Fkp~flG~~~p~-----~~r~~~~QkCiR~~gk~n 75 (236)
T d1riqa2 1 SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRP-----YKRATSCQKCLRVSGKHN 75 (236)
T ss_dssp CCCHHHHHHHHHHHHHHTTCEECCCCCSSCTTCTTCSSCCSTTGGGHHHHTTSSCCS-----CSEEEEEEEEECEETTEE
T ss_pred CCCHHHHHHHHHHHHHhCCCEEcCCCCcccCCCCCeeeecccchhhhhhhcCccccC-----CCccccccccccccCccc
Confidence 489999999999999999999999999999999999999999999999999999886 579999999999999999
Q ss_pred CCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhh--CC
Q 002074 137 DLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LP 214 (972)
Q Consensus 137 Dl~~VG~t~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~lgl~~~rL~vT~~~~~~~~~l~~D~E~~~iW~~~--~~ 214 (972)
||||||+|+|||||||||||||||||||+|||.|||||||++|||||+|||||||++ |+||+++|.+. +|
T Consensus 76 Dld~VG~t~rH~TfFEMLGn~SFgdYfK~eai~~awe~lt~~l~l~~~rl~vtv~~~--------D~e~~~~w~~~~gi~ 147 (236)
T d1riqa2 76 DLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKD--------DEEAYRIWNEHIGIP 147 (236)
T ss_dssp CTTTTTTSSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETT--------CHHHHHHHHTTTCCC
T ss_pred hhhhcCCcccchhhhhhccccccCchhHHHHHHHHHHHHHHHhccCccceEEEeecC--------cHHHHHHHHhhcCcc
Confidence 999999999999999999999999999999999999999999999999999999985 89999999987 99
Q ss_pred CCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeEEEeeeeccccccCCCCccccCCCCccccCc
Q 002074 215 ASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGL 294 (972)
Q Consensus 215 ~~~I~~~~~~dNfW~mG~~GpCGPcsEi~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~l~~Lp~k~IDTGm 294 (972)
++||++++.+||||+||++||||||||||||+++.. ++++|||||||+|||||+|+++|++.|||+|+|||||
T Consensus 148 ~~rI~~~~~~dNfW~~g~~GpcGPcsEi~yd~g~~~-------~~~~r~lEIwNlVFmqy~~~~~G~~~~L~~k~IDTGm 220 (236)
T d1riqa2 148 SERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEY-------EGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGM 220 (236)
T ss_dssp GGGEEEECHHHHEEESSSSEEEEEEEEEEEECCTTS-------CHHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred cccceecCCCCCccccCCCCCCCcceeEEEcccccc-------CCCCceeeeeeeeheeeeecCCCccccCCCCcccCCc
Confidence 999999999999999999999999999999986542 3468999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCCCCc
Q 002074 295 GFERLTSILQNKMSNY 310 (972)
Q Consensus 295 GLERl~~vlq~~~sny 310 (972)
|||||+|||||++|||
T Consensus 221 GLERi~~vlqg~~s~y 236 (236)
T d1riqa2 221 GLERIASVLQGKNSNF 236 (236)
T ss_dssp EHHHHHHHHTTCSSGG
T ss_pred cHHHHHHHHcCCCCCC
Confidence 9999999999999998
|
| >d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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| >d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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| >d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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| >d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
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| >d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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| >d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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