Citrus Sinensis ID: 002091

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------97
MMALDVVTSASTVPASEALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECSKRNKVYLLMNCRAIVKRLKDTAREISQALGILPLASLDLSTDIIEEIEKVCDNMQRAEFRAAIAEEEILEKVESGIQERNVDRSYANHLLSLIADAVGISTERSALKKEFDEFKSEIENSRMRKDQAEAVQMDQIIALLERADAASSPREKEMKYFSKRKSLGSQPLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNTMITIASMKPKLVSTEVEEVLHCLEQLQDLCQQRDQHREWERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLNVLQDQSSYF
ccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHcccccccHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccc
ccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHccccccHHHccccEEEEccccHHHHHHHHHHHcccccccccccEccccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHcccHcHHHEcccccHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccEEEccccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccHHHccccccHHHHHHHccEEcccccEEEEEccccHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccc
MMALDVVTsastvpasEALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKELnkrdlshsegLNSAIEILNREIKGAKELTTECSKRNKVYLLMNCRAIVKRLKDTAREISQALGilplasldlSTDIIEEIEKVCDNMQRAEFRAAIAEEEILEKVESGIQERNVDRSYANHLLSLIADAVGISTERSALKKEFDEFKSEIENSRMRKDQAEAVQMDQIIALLERadaassprEKEMKYFSKrkslgsqpleplqsfycpitrdvmvdpvetssgqtfeRSAIEKWFsdgnnlcpltmtvldtsilrpnkTLRQSIEEWKDRNTMITiasmkpklvsTEVEEVLHCLEQLQDLCQQRDQHREWERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTdhhkasllegnvlgpllhlvsrgdIQMKKVAVKALRNlssvpqnglqmikegavGPLVDLLLhhsssssslREETATAIMHLAVSTmyqessqtpvtllESDKEIFMLFSLINLTGPNVQQRILQTFNALcrspsagnikttltqcsaIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGIlsklpevpqfTQWLLDAGALPIVLNFLkngrqndpnrFQVVENAVGALrrftaptnLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARfsknslglsrpipkrkgfwcfspppeigcqvhgglcgieSSFCLLeanavrplvrvledpdhgacEASLDALVTLIEgerlqngskvlEDANAIDRMVRflsspspklqEKALDSVERIFRlpefkqkygksaqmplvdltqrgnssmKSLSARVLAHLNVlqdqssyf
MMALDVVTsastvpaseALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKElnkrdlshseglnsaIEILNREIKgakelttecskrnkvylLMNCRAIVKRLKDTAREISQALgilplasldlSTDIIEEIEKVCDNMQRAEFRAAIAEEEILEKVESGIQERNVDRSYANHLLSLIADAVGISTERSALKKEFDEFKSEiensrmrkdqAEAVQMDQIIALLeradaasspreKEMKYFskrkslgsqplepLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTvldtsilrpnkTLRQSieewkdrntmITIASMKPKLVSTEVEEVLHCLEQLQDLCQQRDQHREwerlangddavESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAatslarfsknslglsrpIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRflsspspklqekalDSVERIFRLPEfkqkygksaqmplVDLTQRGNSSMKSLSARVLAHlnvlqdqssyf
MMALDVVTSASTVPASEALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECSKRNKVYLLMNCRAIVKRLKDTAREISQALGILPLASLDLSTDIIEEIEKVCDNMQraefraaiaeeeiLEKVESGIQERNVDRSYANHLLSLIADAVGISTERSALKKEFDEFKSEIENSRMRKDQAEAVQMDQIIALLERADAASSPREKEMKYFSKRKSLGSQPLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNTMITIASMKPKLVSTEVEEVLHCLEQLQDLCQQRDQHREWERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDlllhhsssssslREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLNVLQDQSSYF
*****************ALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECSKRNKVYLLMNCRAIVKRLKDTAREISQALGILPLASLDLSTDIIEEIEKVCDNMQRAEFRAAIAEEEILEKVESGIQERNVDRSYANHLLSLIADAVGIS***********************************I*********************************LQSFYCPITRDVMVDPVET**GQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNTMITIASMKPKLVSTEVEEVLHCLEQLQDLCQQRDQHREWERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTM********************F*DDNVVQMAKANYFKHLLQRLS**********ATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLH**************AIMHLAVSTMY******PVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRF******************IFRL***********************************************
*********ASTVPASEALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKELNK**********SAIEILNREIKGAKELTTECSKRNKVYLLMNCRAIVKRLKDTAREISQALGILPLASLDLSTDIIEEIEKVCDNMQRAEFRAAIAEEEILE***************************************************************QIIALLE****************************PLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNT******************************************************************VALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQ**PNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARF******************CFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQ**GKSAQMPLVDLTQRG**SMKSLSARVLAHLNVLQ******
*************PASEALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECSKRNKVYLLMNCRAIVKRLKDTAREISQALGILPLASLDLSTDIIEEIEKVCDNMQRAEFRAAIAEEEILEKVESGIQERNVDRSYANHLLSLIADAVGISTERSALKKEFDEFKSEIENSRMRKDQAEAVQMDQIIALLERA**************SKRKSLGSQPLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNTMITIASMKPKLVSTEVEEVLHCLEQLQDLCQQRDQHREWERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHS*********TATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLNVLQDQSSYF
*****VVTSASTVPASEALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKELNKRDLSHSEGLNSAIEILNREIKGAKELTTECSKRNKVYLLMNCRAIVKRLKDTAREISQALGILPLASLDLSTDIIEEIEKVCDNMQRAEFRAAIAEEEILEKVESGIQERNVDRSYANHLLSLIADAVGISTERSALKKEFDEFKSEIENSRMRKDQAEAVQMDQIIALLERADAASSP****************QPLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNTMITIASMKP**VSTEVEEVLHCLEQLQDLCQQRDQHREWERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLNVLQDQSS*F
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MMALDVVTSASTVPASEALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKELNKRDLSHxxxxxxxxxxxxxxxxxxxxxTTECSKRNKVYLLMNCRAIVKRLKDTAREISQALGILPLASLDLSTDIIEExxxxxxxxxxxxxxxxxxxxxILEKVESGIQERNVDRSYANHLLSLIADAVGISTExxxxxxxxxxxxxxxxxxxxxxxxxxxxQMDQIIALLERADAASSPREKEMKYFSKRKSLGSQPLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQSIEEWKDRNTMITIASMKPKLVSTEVEEVLHCLEQLQDLCQQRDQHREWERLANGDDAVESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLNVLQDQSSYF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query968 2.2.26 [Sep-21-2011]
Q9SFX2811 U-box domain-containing p yes no 0.725 0.865 0.288 4e-56
Q9LM76801 U-box domain-containing p no no 0.723 0.873 0.277 5e-55
Q9CAA71033 Putative U-box domain-con no no 0.790 0.740 0.240 6e-40
Q9SNC6660 U-box domain-containing p no no 0.525 0.771 0.254 2e-33
Q681N2660 U-box domain-containing p no no 0.476 0.698 0.252 3e-26
Q9ZV31654 U-box domain-containing p no no 0.508 0.752 0.250 2e-24
Q5VRH9611 U-box domain-containing p no no 0.446 0.707 0.235 3e-23
Q9C9A6628 U-box domain-containing p no no 0.297 0.458 0.294 1e-21
Q0IMG9694 E3 ubiquitin-protein liga no no 0.440 0.613 0.252 1e-21
A2ZLU6694 Protein spotted leaf 11 O N/A no 0.440 0.613 0.252 1e-21
>sp|Q9SFX2|PUB43_ARATH U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43 PE=2 SV=1 Back     alignment and function desciption
 Score =  220 bits (561), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 226/784 (28%), Positives = 374/784 (47%), Gaps = 82/784 (10%)

Query: 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFS----DGNNL-CPLTMTVLDTSILRPN 318
           ++F CP+T+ VM +PV   +GQTFER AIEKWF     +G  L CP+T   L  + L P+
Sbjct: 27  EAFICPLTKQVMHNPVTLENGQTFEREAIEKWFQECRENGQPLSCPITSKELSITDLSPS 86

Query: 319 KTLRQSIEEWKDRNTMITIASMKPKLVSTEVE-EVLHCLEQLQDLC------QQRDQHRE 371
             LR +IEEW+ RN  + +   +  L     E  +L  L+ ++++C      +QR  + +
Sbjct: 87  IALRNTIEEWRARNDALKLDIARQSLYLGNAETNILLALKNVREICRNIRKIRQRVCNPQ 146

Query: 372 WERL-----------------------ANGD----------DAVESIVRSLGRRIEE-RK 397
             RL                         GD          D V +IV+ L +   + R+
Sbjct: 147 LVRLITDMLKSSSHEVRCKALQTLQVVVEGDEESKAIVAEGDTVRTIVKFLSQEPSKGRE 206

Query: 398 LAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQAS--RDAQELLENLSFSDDNV 455
            AV++L ELS    L ++IG + G I+LLV + SS     S    A + L NL  S++NV
Sbjct: 207 AAVSVLFELSKSEALCEKIGSIHGAIILLVGLTSSKSENVSTVEKADKTLTNLERSEENV 266

Query: 456 VQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRG 515
            QMA     + LL +L  G    K+ MA  L  + L +  K  ++   V   L+ L+   
Sbjct: 267 RQMAINGRLQPLLAKLLEGSPETKVSMAFYLGVLALNNDVKV-IVAQTVGSSLIDLMRTR 325

Query: 516 DIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLA 575
           D+  ++ A+ AL N+SS   +   +I  G + PL+  L +   +   +R +  +A +   
Sbjct: 326 DMSQREAALGALNNISSFEGSAKLLINTGILPPLIKDLFYVGPNQLPIRLKEVSATILAN 385

Query: 576 VSTMYQESSQTPV----TLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSP-SAGN 630
           +  +  +  + PV      L S++ +  L  L + TGP +Q ++L     L   P S  N
Sbjct: 386 IVNIGYDFDKVPVGPHHQTLVSEEIVENLLQLTSNTGPEIQGKLLAVLVGLTSCPNSVIN 445

Query: 631 IKTTLTQCSAIPVLVQLCE-HDNENVRANAVKLFCCLVDDGDEAI---IREHVGQKCLET 686
           + + +   +AI  LVQ  E H+N+++R  ++KL   +     E +   +R  VGQ  L +
Sbjct: 446 VVSAIRNSAAIISLVQFVEIHENDDLRLASIKLLHNISPHMSEELANALRSTVGQ--LGS 503

Query: 687 LVTIIQSSHN--EEEIASAMGILSKLPEVP-QFTQWLLDAGALPIVLNFLKNGRQNDPN- 742
           LV+II  +     EE A+A G+L++LPE     T  LL  GA   +++ +   RQ +   
Sbjct: 504 LVSIISENTPTITEEQAAAAGLLAELPERDLVLTMRLLREGAFEKIISKIVGIRQGEIRG 563

Query: 743 -RFQ--VVENAVGALRRFTAPTNLEWQKR--AAEAGVIPKLVQLLEYGTTLTKEHA-ATS 796
            RF+   +E  V  L R T     E        E  +    + LL+  +    + A AT+
Sbjct: 564 IRFERTFLEGLVSILARITFALTKETDATLFCCEKNLPSLFLDLLQSNSQDNIQRASATA 623

Query: 797 LARFSKNSLGLSR----PIPKR--KGFWCFSPPPEI--GCQVHGGLCGIESSFCLLEANA 848
           L   S  S  L++    P P      F C S PP +   C++H G+C +  SFCL+E  A
Sbjct: 624 LENLSLESKNLTKIPELPPPTYCVSIFSCLSKPPVVLGICKIHQGICSVRESFCLVEGQA 683

Query: 849 VRPLVRVLEDPDHGACEASLDALVTLIE-GERLQNGSKVLEDANAIDRMVR-FLSSPSPK 906
           V  LV +L+  +      +L AL TL+E G  +  G +++++A+ I  ++   L + +  
Sbjct: 684 VDKLVDLLDHENDKVVGPALAALSTLLEDGLDVVQGVRLIDEADGITPILNVLLENRTEN 743

Query: 907 LQEKALDSVERIFRLPEFKQKYG--KSAQMPLVDLTQRGNSSMKSLSARVLAHLNVLQDQ 964
           L+ +A+  VERI R+ E  ++ G  ++    LVD  Q  +   + ++ + L H++ + + 
Sbjct: 744 LRIRAVWMVERILRIEEIAREVGEEQNVTAALVDAFQNADFRTRQIAEKALRHIDKIPNF 803

Query: 965 SSYF 968
           S  F
Sbjct: 804 SGIF 807
Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q9LM76|PUB44_ARATH U-box domain-containing protein 44 OS=Arabidopsis thaliana GN=PUB44 PE=1 SV=1 Back     alignment and function description
>sp|Q9CAA7|PUB42_ARATH Putative U-box domain-containing protein 42 OS=Arabidopsis thaliana GN=PUB42 PE=2 SV=1 Back     alignment and function description
>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1 Back     alignment and function description
>sp|Q681N2|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1 Back     alignment and function description
>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1 Back     alignment and function description
>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2 Back     alignment and function description
>sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query968
2977455111006 unnamed protein product [Vitis vinifera] 0.997 0.960 0.678 0.0
3575125751001 U-box domain-containing protein [Medicag 0.991 0.959 0.625 0.0
357514475993 U-box domain-containing protein [Medicag 0.979 0.954 0.605 0.0
2555646011033 Spotted leaf protein, putative [Ricinus 0.992 0.930 0.602 0.0
3021439451003 unnamed protein product [Vitis vinifera] 0.994 0.960 0.581 0.0
3594908181019 PREDICTED: U-box domain-containing prote 0.991 0.942 0.556 0.0
3594897511032 PREDICTED: U-box domain-containing prote 0.991 0.930 0.562 0.0
224130612691 predicted protein [Populus trichocarpa] 0.667 0.934 0.709 0.0
147798005939 hypothetical protein VITISV_002920 [Viti 0.928 0.957 0.514 0.0
3565186511007 PREDICTED: U-box domain-containing prote 0.998 0.960 0.492 0.0
>gi|297745511|emb|CBI40591.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1342 bits (3472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 683/1007 (67%), Positives = 814/1007 (80%), Gaps = 41/1007 (4%)

Query: 2    MALDVVTSASTVPASEALSQIVEAILEVMIASNNVLIKKESFKELAAYLERIVPVLKELN 61
            M LD +TS S  PA+E LSQIVE ++EV +A+++VLI+K SF EL  YL+RI+P+LKELN
Sbjct: 1    MTLDAITSVSLAPAAEVLSQIVEIMIEVAVAADDVLIEKRSFAELQHYLQRIIPILKELN 60

Query: 62   KRDLSHSEGLNSAIEILNREIKGAKELTTECSKRNKVYLLMNCRAIVKRLKDTAREISQA 121
            K+ +SHSE LN+AIEILNRE K AK+LT EC K+NKVYLLM+CR++V+RL++T RE+S+A
Sbjct: 61   KKGISHSESLNNAIEILNRETKVAKQLTLECCKKNKVYLLMHCRSVVQRLENTTREMSRA 120

Query: 122  LGILPLASLDLSTDIIEEIEKVCDNMQRAEFRAAIAEEEILEKVESGIQERNVDRSYANH 181
            L ++PLASLDLS+ IIEEI K+CDNM  AEFRAAIAEEEILEK+E+GIQER+VDRSYAN+
Sbjct: 121  LSLIPLASLDLSSSIIEEIGKLCDNMGTAEFRAAIAEEEILEKIEAGIQERSVDRSYANN 180

Query: 182  LLSLIADAVGISTERSALKKEFDEFKSEIENSRMRKDQAEAVQMDQIIALLERADAASSP 241
            LL LIA  +GISTERSALKKEF+EFK EIE++ +RK+ AEA+QMDQIIALL RADAASSP
Sbjct: 181  LLVLIAQTLGISTERSALKKEFEEFKKEIESTHVRKNMAEAIQMDQIIALLGRADAASSP 240

Query: 242  REKEMKYFSKRKSLGSQPLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNN 301
            +EKEM+YF+KR SLGSQPLEPL SFYCPITRDVM DPVETSSGQTFERSAIEKWF+DGN 
Sbjct: 241  KEKEMRYFTKRNSLGSQPLEPLLSFYCPITRDVMTDPVETSSGQTFERSAIEKWFADGNK 300

Query: 302  LCPLTMTVLDTSILRPNKTLRQSIEEWKDRNTMITIASMKPKLVSTEVEEVLHCLEQLQD 361
            LCPLTMT LDTSILRPNKTLRQSIEEW+DRNTMI IAS+KPKL+S + EEVL+CLEQLQD
Sbjct: 301  LCPLTMTPLDTSILRPNKTLRQSIEEWRDRNTMIRIASIKPKLLSEDEEEVLNCLEQLQD 360

Query: 362  LCQQRDQHREWERLANG----------------------------------------DDA 381
            LC+QRD H+EW  L N                                         D++
Sbjct: 361  LCEQRDLHQEWVVLENYAPTLIKLLGEKNRDIRIRALLILCILAKDSDDTKVKIVEVDNS 420

Query: 382  VESIVRSLGRRIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASSDDNQASRDA 441
            +ESIV SLGRRIEERKLAVALLLELS  + +RD IG VQGCILLLVTM SSDDNQA+RDA
Sbjct: 421  IESIVHSLGRRIEERKLAVALLLELSKSDLVRDSIGKVQGCILLLVTMLSSDDNQAARDA 480

Query: 442  QELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTDHHKASLLE 501
            +ELLENLSFSD N++QMAKANYFK+LLQRLS+GPE VK  MATTLAE+ELTD +K+SLLE
Sbjct: 481  RELLENLSFSDQNIIQMAKANYFKYLLQRLSSGPEDVKCIMATTLAELELTDPNKSSLLE 540

Query: 502  GNVLGPLLHLVSRGDIQMKKVAVKALRNLSSVPQNGLQMIKEGAVGPLVDLLLHHSSSSS 561
              VLG LL LV+ G++ MK VA+KAL+NLSS+ +NGL+MIKEGA+ PL++LL  H     
Sbjct: 541  DGVLGSLLPLVTNGELPMKMVAIKALKNLSSLQKNGLRMIKEGAMRPLLELLFSH-GPVP 599

Query: 562  SLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNA 621
            SLRE+ A  IMHLA+STM QE+ Q  V+LLESD++IF LFSL++LTGP++Q+ IL TF A
Sbjct: 600  SLREQAAATIMHLAISTMSQETEQPQVSLLESDEDIFKLFSLVHLTGPDIQKSILCTFFA 659

Query: 622  LCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQ 681
            LC+SPSA NIK  L QC+A+ VLVQLCE DN  VR NAVKL   L DDG+EA I EH+ Q
Sbjct: 660  LCQSPSATNIKAKLRQCTAVQVLVQLCELDNPEVRPNAVKLLSRLTDDGEEATILEHMDQ 719

Query: 682  KCLETLVTIIQSSHNEEEIASAMGILSKLPEVPQFTQWLLDAGALPIVLNFLKNGRQNDP 741
            K +ETLV II+SS +E+E+ SAMGI+S LPE PQ T+W LDAGAL I+ NFL++ +Q  P
Sbjct: 720  KDVETLVKIIKSSTDEDEVGSAMGIISNLPEDPQITRWFLDAGALSIIFNFLRDTKQKGP 779

Query: 742  NRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFS 801
             + Q++EN VGA+ RFT  TN E QK+AAEAG+IP LVQ LE GT+LTK+ +A SLA+FS
Sbjct: 780  CKDQLIENTVGAVCRFTVSTNQELQKKAAEAGIIPVLVQWLERGTSLTKKRSAISLAQFS 839

Query: 802  KNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAVRPLVRVLEDPDH 861
            ++S  LSR +PKR GF CFS PPE GC VH G+C IESSFCLLEA+AV PLVRVL + D 
Sbjct: 840  QSSPRLSRSLPKRGGFLCFSAPPETGCPVHRGICSIESSFCLLEADAVGPLVRVLAEADP 899

Query: 862  GACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRL 921
             A EAS DAL+TLIEGERLQ+GSKVL DANAI  ++R L S SP LQEKAL+++ERIFRL
Sbjct: 900  QASEASFDALLTLIEGERLQSGSKVLADANAIPLIIRSLGSSSPTLQEKALNALERIFRL 959

Query: 922  PEFKQKYGKSAQMPLVDLTQRGNSSMKSLSARVLAHLNVLQDQSSYF 968
             EFKQ+YG SAQMPLVDLTQRG+SS KSL+AR+LAHLNVL +QSSYF
Sbjct: 960  VEFKQRYGASAQMPLVDLTQRGSSSTKSLAARILAHLNVLHEQSSYF 1006

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357512575|ref|XP_003626576.1| U-box domain-containing protein [Medicago truncatula] gi|355501591|gb|AES82794.1| U-box domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357514475|ref|XP_003627526.1| U-box domain-containing protein [Medicago truncatula] gi|355521548|gb|AET02002.1| U-box domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|255564601|ref|XP_002523295.1| Spotted leaf protein, putative [Ricinus communis] gi|223537383|gb|EEF39011.1| Spotted leaf protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302143945|emb|CBI23050.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359490818|ref|XP_002271691.2| PREDICTED: U-box domain-containing protein 43 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359489751|ref|XP_002264635.2| PREDICTED: U-box domain-containing protein 43-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224130612|ref|XP_002320884.1| predicted protein [Populus trichocarpa] gi|222861657|gb|EEE99199.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147798005|emb|CAN69463.1| hypothetical protein VITISV_002920 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356518651|ref|XP_003527992.1| PREDICTED: U-box domain-containing protein 43-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query968
TAIR|locus:2030462801 SAUL1 "senescence-associated E 0.648 0.784 0.277 5.1e-31
TAIR|locus:2014584811 PUB43 "plant U-box 43" [Arabid 0.517 0.617 0.281 3.8e-29
TAIR|locus:2075140660 PUB13 "plant U-box 13" [Arabid 0.384 0.563 0.247 7.2e-32
TAIR|locus:2162276660 PUB15 "Plant U-Box 15" [Arabid 0.524 0.769 0.251 7e-27
TAIR|locus:2102455760 AT3G54790 [Arabidopsis thalian 0.277 0.353 0.257 4.3e-25
TAIR|locus:2045334829 PUB4 "plant U-box 4" [Arabidop 0.181 0.212 0.307 9e-23
UNIPROTKB|Q0IMG9694 SPL11 "E3 ubiquitin-protein li 0.392 0.547 0.243 1.8e-21
TAIR|locus:2181077674 SAUR21 "SMALL AUXIN UP RNA 21" 0.319 0.458 0.25 3.8e-21
TAIR|locus:2032472771 AT1G24330 [Arabidopsis thalian 0.097 0.121 0.432 6.7e-20
TAIR|locus:2008813782 AT1G67530 [Arabidopsis thalian 0.078 0.097 0.454 1.1e-19
TAIR|locus:2030462 SAUL1 "senescence-associated E3 ubiquitin ligase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 375 (137.1 bits), Expect = 5.1e-31, P = 5.1e-31
 Identities = 193/695 (27%), Positives = 307/695 (44%)

Query:   242 REKEMKYFSKRKSLGSQPLEPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFS--DG 299
             RE   K+F + +  G  P        CP+T   +    + S+     R+ IE+W S  D 
Sbjct:    50 REAIEKWFKECRDSGRPPS-------CPLTSQELTS-TDVSASIAL-RNTIEEWRSRNDA 100

Query:   300 NNLCPLTMTVL----DTSILRPNKTLRQSIEEWKD-----RNTMITIASMKPKLVSTEVE 350
               L     ++     +T IL+    +RQ     +      RN+ + I  +   L ST   
Sbjct:   101 AKLDIARQSLFLGNAETDILQALMHVRQICRTIRSNRHGVRNSQL-IHMIIDMLKSTSHR 159

Query:   351 EVLHCLEQLQDLCQQRDQHREWERLANGDDAVESIVRSLGRRIEE-RKLAVALLLELSTC 409
                  L+ LQ + +  D+ +    +A GD  V ++V+ L     + R+ AV+LL ELS  
Sbjct:   160 VRYKALQTLQVVVEGDDESKAI--VAEGD-TVRTLVKFLSHEPSKGREAAVSLLFELSKS 216

Query:   410 NTLRDQIGDVQGCILLLVTMASSDDNQAS--RDAQELLENLSFSDDNVVQMAKANYFKHL 467
               L ++IG + G ++LLV + SS+    S    A   LEN+  S++ V QMA     + L
Sbjct:   217 EALCEKIGSIHGALILLVGLTSSNSENVSIVEKADRTLENMERSEEIVRQMASYGRLQPL 276

Query:   468 LQRLSAGPESVKMRMATTLAEMELTDHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKAL 527
             L +L  G    K+ MA+ L E+ L +  K  L+   V   L+ L+  GD+  ++ A+KAL
Sbjct:   277 LGKLLEGSPETKLSMASFLGELPLNNDVKV-LVAQTVGSSLVDLMRSGDMPQREAALKAL 335

Query:   528 RNLSSVPQNGLQMIKEGAVGPLVDXXXXXXXXXXXXR-EETATAIMHLAVSTMYQESSQT 586
               +SS   +   +I +G + PL+             R +E +  I+   V+  Y     T
Sbjct:   336 NKISSFEGSAKVLISKGILPPLIKDLFYVGPNNLPIRLKEVSATILANIVNIGYDFDKAT 395

Query:   587 PVTLLESDKEIFMLFSLINLTGPNVQQRILQTFNALCRSP-SAGNIKTTLTQCSAIPVLV 645
                 L S+  +  L  LI+ TGP +Q ++L+    L   P +   +   +    AI  LV
Sbjct:   396 ----LVSENRVENLLHLISNTGPAIQCKLLEVLVGLTSCPKTVPKVVYAIKTSGAIISLV 451

Query:   646 QLCE-HDNENVRANAVKLFCCLVDDGDEAIIREHVGQKC-LETLVTII-QSSHNEEEIAS 702
             Q  E  +N+++R  ++KL   L     E + +   G    L +LV II + +   EE A+
Sbjct:   452 QFIEVRENDDLRLASIKLLHNLSPFMSEELAKALCGTAGQLGSLVAIISEKTPITEEQAA 511

Query:   703 AMGILSKLPEVPQ-FTQWLLDAGALPIVLNFLKNGRQNDPN--RF--QVVENAVGALRRF 757
             A G+L++LP+     TQ +L+ GA   +++ +   RQ D    RF    +E  V  L R 
Sbjct:   512 AAGLLAELPDRDLGLTQEMLEVGAFEKIISKVFGIRQGDIKGMRFVNPFLEGLVRILARI 571

Query:   758 TAPTNLEWQ--KRAAEAGVIPKLVQLLEY-GTTLTKEHAATSLARFSKNSLGLSR-PIPK 813
             T   N E +      E  V    + LL+  G    +  +A +L   S  S+ L+R P P 
Sbjct:   572 TFVFNKEARAINFCREHDVASLFLHLLQSNGQDNIQMVSAMALENLSLESIKLTRMPDPP 631

Query:   814 RKGFWCFSPPPEIGC----QVHGGLCGIESSFCLLEANAVRPLVRVLEDPDHGACE---A 866
                + C S      C     V  GLC I    C L     R    ++E    GA E   A
Sbjct:   632 PVNY-CGSI---FSCVRKPHVVNGLCKIHQGICSL-----RETFCLVEG---GAVEKLVA 679

Query:   867 SLD-ALVTLIEGERLQNGSKVLEDANAIDRMVRFL 900
              LD   V ++E   L   S +LED   +++ V+ L
Sbjct:   680 LLDHENVKVVEAA-LAALSSLLEDGLDVEKGVKIL 713
GO:0000151 "ubiquitin ligase complex" evidence=IEA
GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0016567 "protein ubiquitination" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI
GO:0005515 "protein binding" evidence=IPI
GO:0010115 "regulation of abscisic acid biosynthetic process" evidence=IMP
GO:0010150 "leaf senescence" evidence=IMP
GO:0010271 "regulation of chlorophyll catabolic process" evidence=IMP
GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP
GO:0090359 "negative regulation of abscisic acid biosynthetic process" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
TAIR|locus:2014584 PUB43 "plant U-box 43" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162276 PUB15 "Plant U-Box 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102455 AT3G54790 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2181077 SAUR21 "SMALL AUXIN UP RNA 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032472 AT1G24330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008813 AT1G67530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.20.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query968
smart0050463 smart00504, Ubox, Modified RING finger domain 1e-19
pfam0456473 pfam04564, U-box, U-box domain 2e-14
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 4e-08
COG5064526 COG5064, SRP1, Karyopherin (importin) alpha [Intra 1e-05
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 3e-05
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 4e-05
pfam1344555 pfam13445, zf-RING_LisH, RING-type zinc-finger, Li 6e-05
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 1e-04
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 1e-04
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 1e-04
pfam1178957 pfam11789, zf-Nse, Zinc-finger of the MIZ type in 7e-04
>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain Back     alignment and domain information 
 Score = 83.4 bits (207), Expect = 1e-19
 Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 265 SFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQS 324
            F CPI+ +VM DPV   SGQT+ERSAIEKW    +   P+T   L    L PN  L+ +
Sbjct: 1   EFLCPISLEVMKDPVILPSGQTYERSAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSA 59

Query: 325 IEEW 328
           I+EW
Sbjct: 60  IQEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63
>gnl|CDD|203049 pfam04564, U-box, U-box domain Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 968
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 100.0
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 100.0
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 100.0
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 100.0
KOG4224550 consensus Armadillo repeat protein VAC8 required f 100.0
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.98
KOG4224550 consensus Armadillo repeat protein VAC8 required f 99.98
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.98
PF05804708 KAP: Kinesin-associated protein (KAP) 99.93
PF05804708 KAP: Kinesin-associated protein (KAP) 99.91
KOG1048717 consensus Neural adherens junction protein Plakoph 99.85
KOG1048717 consensus Neural adherens junction protein Plakoph 99.83
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 99.83
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 99.78
KOG4199461 consensus Uncharacterized conserved protein [Funct 99.7
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 99.65
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 99.64
smart0050463 Ubox Modified RING finger domain. Modified RING fi 99.62
KOG1222791 consensus Kinesin associated protein KAP [Intracel 99.62
KOG4500 604 consensus Rho/Rac GTPase guanine nucleotide exchan 99.59
KOG4199461 consensus Uncharacterized conserved protein [Funct 99.58
KOG1222791 consensus Kinesin associated protein KAP [Intracel 99.56
KOG4642284 consensus Chaperone-dependent E3 ubiquitin protein 99.47
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.47
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.46
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.42
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 99.41
KOG1293 678 consensus Proteins containing armadillo/beta-caten 99.4
PRK09687280 putative lyase; Provisional 99.38
PRK09687280 putative lyase; Provisional 99.38
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.37
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.33
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 99.31
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.29
PTZ00429 746 beta-adaptin; Provisional 99.27
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.27
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.24
KOG1293678 consensus Proteins containing armadillo/beta-caten 99.24
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 99.23
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 99.22
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 99.08
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 99.08
PTZ00429 746 beta-adaptin; Provisional 99.05
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 99.03
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 99.0
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.93
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 98.92
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 98.89
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 98.85
TIGR00599397 rad18 DNA repair protein rad18. This family is bas 98.81
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 98.76
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 98.73
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 98.68
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 98.64
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 98.6
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 98.6
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 98.6
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 98.53
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 98.5
KOG3678 832 consensus SARM protein (with sterile alpha and arm 98.43
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.43
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 98.41
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 98.38
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 98.38
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 98.34
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 98.33
KOG0287442 consensus Postreplication repair protein RAD18 [Re 98.3
PF05536543 Neurochondrin: Neurochondrin 98.27
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 98.24
TIGR02270410 conserved hypothetical protein. Members are found 98.24
KOG2042943 consensus Ubiquitin fusion degradation protein-2 [ 98.2
KOG0823230 consensus Predicted E3 ubiquitin ligase [Posttrans 98.2
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 98.18
TIGR02270410 conserved hypothetical protein. Members are found 98.17
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 98.17
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 98.16
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.15
KOG2973353 consensus Uncharacterized conserved protein [Funct 98.14
PHA02929238 N1R/p28-like protein; Provisional 98.11
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 98.09
KOG17892235 consensus Endocytosis protein RME-8, contains DnaJ 98.08
COG5432391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 98.08
KOG1789 2235 consensus Endocytosis protein RME-8, contains DnaJ 98.07
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 98.04
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 98.0
COG5113929 UFD2 Ubiquitin fusion degradation protein 2 [Postt 97.99
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 97.99
cd0016245 RING RING-finger (Really Interesting New Gene) dom 97.98
KOG4413524 consensus 26S proteasome regulatory complex, subun 97.98
KOG1242569 consensus Protein containing adaptin N-terminal re 97.92
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.92
KOG1824 1233 consensus TATA-binding protein-interacting protein 97.92
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 97.92
KOG2177386 consensus Predicted E3 ubiquitin ligase [Posttrans 97.91
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 97.91
KOG1242 569 consensus Protein containing adaptin N-terminal re 97.9
COG5215 858 KAP95 Karyopherin (importin) beta [Intracellular t 97.87
KOG4646173 consensus Uncharacterized conserved protein, conta 97.86
PF05536543 Neurochondrin: Neurochondrin 97.86
KOG3678832 consensus SARM protein (with sterile alpha and arm 97.85
PHA02926242 zinc finger-like protein; Provisional 97.84
KOG1824 1233 consensus TATA-binding protein-interacting protein 97.81
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 97.81
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 97.8
KOG2973353 consensus Uncharacterized conserved protein [Funct 97.79
KOG4413 524 consensus 26S proteasome regulatory complex, subun 97.79
KOG4646173 consensus Uncharacterized conserved protein, conta 97.78
KOG0311381 consensus Predicted E3 ubiquitin ligase [Posttrans 97.77
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.76
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.74
KOG0212 675 consensus Uncharacterized conserved protein [Funct 97.73
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.69
KOG0212 675 consensus Uncharacterized conserved protein [Funct 97.67
COG5215 858 KAP95 Karyopherin (importin) beta [Intracellular t 97.67
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 97.65
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 97.65
PF10165446 Ric8: Guanine nucleotide exchange factor synembryn 97.63
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 97.61
KOG2259 823 consensus Uncharacterized conserved protein [Funct 97.6
TIGR00570309 cdk7 CDK-activating kinase assembly factor MAT1. A 97.6
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 97.59
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.59
PF1463444 zf-RING_5: zinc-RING finger domain 97.56
KOG0289506 consensus mRNA splicing factor [General function p 97.55
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 97.53
KOG0211 759 consensus Protein phosphatase 2A regulatory subuni 97.52
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 97.42
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 97.42
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 97.38
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 97.33
KOG2734536 consensus Uncharacterized conserved protein [Funct 97.33
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 97.29
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.24
KOG0297391 consensus TNF receptor-associated factor [Signal t 97.21
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.16
PF05659147 RPW8: Arabidopsis broad-spectrum mildew resistance 97.13
KOG2734536 consensus Uncharacterized conserved protein [Funct 97.1
COG5222427 Uncharacterized conserved protein, contains RING Z 97.09
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 97.07
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 97.06
COG5369743 Uncharacterized conserved protein [Function unknow 97.04
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 97.02
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 96.91
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 96.91
KOG2259 823 consensus Uncharacterized conserved protein [Funct 96.89
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 96.78
PF10165446 Ric8: Guanine nucleotide exchange factor synembryn 96.78
KOG4159398 consensus Predicted E3 ubiquitin ligase [Posttrans 96.75
KOG2660331 consensus Locus-specific chromosome binding protei 96.74
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 96.73
PF04078262 Rcd1: Cell differentiation family, Rcd1-like ; Int 96.7
COG5369 743 Uncharacterized conserved protein [Function unknow 96.7
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.69
KOG2164513 consensus Predicted E3 ubiquitin ligase [Posttrans 96.68
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 96.67
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.65
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 96.62
COG5096 757 Vesicle coat complex, various subunits [Intracellu 96.59
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 96.58
PRK14707 2710 hypothetical protein; Provisional 96.53
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 96.51
PRK14707 2710 hypothetical protein; Provisional 96.49
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 96.45
KOG0567289 consensus HEAT repeat-containing protein [General 96.4
PF04078262 Rcd1: Cell differentiation family, Rcd1-like ; Int 96.4
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 96.36
KOG3036293 consensus Protein involved in cell differentiation 96.34
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 96.33
KOG0567289 consensus HEAT repeat-containing protein [General 96.31
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.27
PF09759102 Atx10homo_assoc: Spinocerebellar ataxia type 10 pr 96.21
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 96.18
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 96.13
KOG3036293 consensus Protein involved in cell differentiation 96.11
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 96.05
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.03
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 95.99
KOG1002791 consensus Nucleotide excision repair protein RAD16 95.89
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 95.83
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 95.81
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 95.8
KOG0824324 consensus Predicted E3 ubiquitin ligase [Posttrans 95.76
KOG4535 728 consensus HEAT and armadillo repeat-containing pro 95.7
KOG4367699 consensus Predicted Zn-finger protein [Function un 95.59
KOG3039303 consensus Uncharacterized conserved protein [Funct 95.55
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 95.49
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 95.43
KOG0802543 consensus E3 ubiquitin ligase [Posttranslational m 95.38
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 95.22
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 95.21
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 95.19
PF09759102 Atx10homo_assoc: Spinocerebellar ataxia type 10 pr 95.09
COG5152259 Uncharacterized conserved protein, contains RING a 95.03
PF11841160 DUF3361: Domain of unknown function (DUF3361) 94.95
PF11841160 DUF3361: Domain of unknown function (DUF3361) 94.94
KOG2979262 consensus Protein involved in DNA repair [General 94.94
PF05004309 IFRD: Interferon-related developmental regulator ( 94.88
KOG4151748 consensus Myosin assembly protein/sexual cycle pro 94.78
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 94.77
smart0050463 Ubox Modified RING finger domain. Modified RING fi 94.69
PF04641260 Rtf2: Rtf2 RING-finger 94.65
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 94.64
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 94.52
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 94.3
KOG4151748 consensus Myosin assembly protein/sexual cycle pro 94.29
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 94.17
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 94.15
KOG3039303 consensus Uncharacterized conserved protein [Funct 94.12
COG5243491 HRD1 HRD ubiquitin ligase complex, ER membrane com 94.08
PF05004309 IFRD: Interferon-related developmental regulator ( 94.02
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 93.98
KOG0826357 consensus Predicted E3 ubiquitin ligase involved i 93.9
KOG4535728 consensus HEAT and armadillo repeat-containing pro 93.67
COG5096 757 Vesicle coat complex, various subunits [Intracellu 93.52
KOG2062929 consensus 26S proteasome regulatory complex, subun 93.47
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 93.19
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 92.84
PF13764 802 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 92.64
KOG2999 713 consensus Regulator of Rac1, required for phagocyt 92.42
PF06025379 DUF913: Domain of Unknown Function (DUF913); Inter 92.33
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 92.33
PF04063192 DUF383: Domain of unknown function (DUF383); Inter 92.19
PF0289150 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041 91.89
KOG1832 1516 consensus HIV-1 Vpr-binding protein [Cell cycle co 91.78
KOG2817394 consensus Predicted E3 ubiquitin ligase [Posttrans 91.45
KOG2062 929 consensus 26S proteasome regulatory complex, subun 90.92
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 90.88
PF13764 802 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 90.78
KOG3113293 consensus Uncharacterized conserved protein [Funct 90.77
KOG2025 892 consensus Chromosome condensation complex Condensi 90.65
KOG1734328 consensus Predicted RING-containing E3 ubiquitin l 90.46
KOG1832 1516 consensus HIV-1 Vpr-binding protein [Cell cycle co 90.39
KOG0414 1251 consensus Chromosome condensation complex Condensi 90.36
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 90.2
PF08045257 CDC14: Cell division control protein 14, SIN compo 90.17
PF08045257 CDC14: Cell division control protein 14, SIN compo 89.96
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 89.71
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 89.67
smart0074449 RINGv The RING-variant domain is a C4HC3 zinc-fing 89.51
KOG0827465 consensus Predicted E3 ubiquitin ligase [Posttrans 89.49
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 89.38
KOG1788 2799 consensus Uncharacterized conserved protein [Funct 89.23
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 89.22
KOG22741005 consensus Predicted importin 9 [Intracellular traf 88.92
PF04063192 DUF383: Domain of unknown function (DUF383); Inter 88.86
KOG0828636 consensus Predicted E3 ubiquitin ligase [Posttrans 88.54
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 88.44
KOG2999 713 consensus Regulator of Rac1, required for phagocyt 88.24
PF07814361 WAPL: Wings apart-like protein regulation of heter 88.18
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 87.97
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 87.69
PF07814361 WAPL: Wings apart-like protein regulation of heter 87.63
KOG2611 698 consensus Neurochondrin/leucine-rich protein (Neur 87.37
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 86.64
KOG3665699 consensus ZYG-1-like serine/threonine protein kina 86.32
COG5209315 RCD1 Uncharacterized protein involved in cell diff 86.25
PF11701157 UNC45-central: Myosin-binding striated muscle asse 85.93
KOG3161 861 consensus Predicted E3 ubiquitin ligase [Posttrans 85.44
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 85.34
KOG2956516 consensus CLIP-associating protein [General functi 85.34
KOG2025 892 consensus Chromosome condensation complex Condensi 85.28
PF1466873 RICTOR_V: Rapamycin-insensitive companion of mTOR, 84.88
KOG1566342 consensus Conserved protein Mo25 [Function unknown 84.88
KOG1785563 consensus Tyrosine kinase negative regulator CBL [ 84.84
KOG0883518 consensus Cyclophilin type, U box-containing pepti 84.69
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 84.6
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 84.45
KOG2032533 consensus Uncharacterized conserved protein [Funct 84.42
PF11701157 UNC45-central: Myosin-binding striated muscle asse 84.31
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 84.07
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 84.05
PF1457048 zf-RING_4: RING/Ubox like zinc-binding domain; PDB 83.82
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 83.37
KOG2611 698 consensus Neurochondrin/leucine-rich protein (Neur 83.31
COG5627275 MMS21 DNA repair protein MMS21 [DNA replication, r 83.16
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 82.57
KOG1001674 consensus Helicase-like transcription factor HLTF/ 82.32
COG5209315 RCD1 Uncharacterized protein involved in cell diff 81.54
KOG22741005 consensus Predicted importin 9 [Intracellular traf 81.49
KOG04141251 consensus Chromosome condensation complex Condensi 81.37
COG5109396 Uncharacterized conserved protein, contains RING Z 81.3
KOG4653982 consensus Uncharacterized conserved protein [Funct 81.21
KOG0396389 consensus Uncharacterized conserved protein [Funct 80.21
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 80.12
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.9e-46  Score=465.45  Aligned_cols=591  Identities=20%  Similarity=0.246  Sum_probs=481.1

Q ss_pred             HHHHHhHHHHHHHhhhcchhhHHHHhcccchhHHHHHHhhcc-ChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHH
Q 002091          350 EEVLHCLEQLQDLCQQRDQHREWERLANGDDAVESIVRSLGR-RIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVT  428 (968)
Q Consensus       350 ~~~~~aL~~l~~~~~~~~~~r~~~~i~~~~~~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~  428 (968)
                      .....++.+|..+.++++.||.++  ++..|+++.|+..|++ +...+..|+..|.++++.++++..|.. .|+||+|+.
T Consensus        30 ~~~~~Al~~Lr~Lak~~~enR~~I--a~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~-~GaIppLV~  106 (2102)
T PLN03200         30 QEKELTTARLLELAKTREEARKAI--GSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLL-GGCIPPLLS  106 (2102)
T ss_pred             HHHHHHHHHHHHHHhcChHHHHHH--HHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHH-cCChHHHHH
Confidence            344568999999999999999876  4338999999999965 566889999999999999999999998 899999999


Q ss_pred             hhcCCCHHHHHHHHHHHHhccCC---chhH-HHHHhCCchHHHHHHHhcCC---HHHHHHHHHHHHHhccCchhhH-HHh
Q 002091          429 MASSDDNQASRDAQELLENLSFS---DDNV-VQMAKANYFKHLLQRLSAGP---ESVKMRMATTLAEMELTDHHKA-SLL  500 (968)
Q Consensus       429 lL~s~~~~~~~~a~~~L~~Ls~~---~~n~-~~i~~~g~v~~Lv~~L~~~~---~~~~~~aa~~L~~L~~~~~~~~-~i~  500 (968)
                      +|++++.+.+++|+.+|.+|+.+   +.++ ..+++.|++++|+.+|+.++   ..++..++.+|++|+..++++. .+.
T Consensus       107 LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~II  186 (2102)
T PLN03200        107 LLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATL  186 (2102)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHH
Confidence            99999999999999999999965   4445 44568999999999999984   2356778899999998888775 567


Q ss_pred             hcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC-CCccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcc
Q 002091          501 EGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VPQNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTM  579 (968)
Q Consensus       501 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~  579 (968)
                      +.|+++.|+.+|+++++..+..|+++|.+++. .++.+..+++.|+||.|+++|.+++  ++.++++|+++|.||+.++.
T Consensus       187 eaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~--~~~VRE~AA~AL~nLAs~s~  264 (2102)
T PLN03200        187 EAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGN--EVSVRAEAAGALEALSSQSK  264 (2102)
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCC--ChHHHHHHHHHHHHHhcCCH
Confidence            89999999999999999999999999999985 4678999999999999999998654  25899999999999998643


Q ss_pred             cccCCCCccccccchhHHHHHHHhhccCC---------HHHHHHHHHHHHHhccCCCh----------------------
Q 002091          580 YQESSQTPVTLLESDKEIFMLFSLINLTG---------PNVQQRILQTFNALCRSPSA----------------------  628 (968)
Q Consensus       580 ~~~~~~~~~~il~~~~~i~~l~~ll~~~~---------~~~~~~al~~L~~L~~~~~~----------------------  628 (968)
                      ...      ..+...|+++.|+.++...+         ..++++++|+|.|+|++...                      
T Consensus       265 e~r------~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~  338 (2102)
T PLN03200        265 EAK------QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTL  338 (2102)
T ss_pred             HHH------HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHH
Confidence            222      24666788999999887443         44688999999998873110                      


Q ss_pred             -------------------------------------------------------hhHHHHHhhcCchHHHHHhhccCCh
Q 002091          629 -------------------------------------------------------GNIKTTLTQCSAIPVLVQLCEHDNE  653 (968)
Q Consensus       629 -------------------------------------------------------~~~~~~i~~~g~i~~Lv~ll~~~~~  653 (968)
                                                                             ...+..+.+.++++.|+.++...+.
T Consensus       339 gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~  418 (2102)
T PLN03200        339 GALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATA  418 (2102)
T ss_pred             hhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCH
Confidence                                                                   0001123344566677777777778


Q ss_pred             hHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccCCCHHHHHHHHHHHhcCCC-CHHhHHHHHHcCCHHHHHHH
Q 002091          654 NVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSSHNEEEIASAMGILSKLPE-VPQFTQWLLDAGALPIVLNF  732 (968)
Q Consensus       654 ~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~~Al~~L~nL~~-~~~~~~~l~~~g~l~~Lv~l  732 (968)
                      +++..++++|++|+ .++++.+..+.+.|+++.|+++|.+. +...+..|+++|++|+. +++.+..++++|+++.|+++
T Consensus       419 evQ~~Av~aL~~L~-~~~~e~~~aIi~~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~L  496 (2102)
T PLN03200        419 DVQEELIRALSSLC-CGKGGLWEALGGREGVQLLISLLGLS-SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQL  496 (2102)
T ss_pred             HHHHHHHHHHHHHh-CCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence            89999999999999 77788889999999999999999984 66899999999999998 88899999999999999999


Q ss_pred             hhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHHHHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCC----
Q 002091          733 LKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLS----  808 (968)
Q Consensus       733 L~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~----  808 (968)
                      |.+      ++..++++|+|+|+|++.. +++.+..+.++|++|.|+++|.++++++|..|+|+|.|+......-.    
T Consensus       497 L~s------~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~L  569 (2102)
T PLN03200        497 LET------GSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQL  569 (2102)
T ss_pred             HcC------CCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHH
Confidence            998      5688999999999999996 67777778899999999999999999999999999999974332100    


Q ss_pred             -----CCC----------------------------CCCCccccc---CCCCC-----cccccC--CCccCcccchHHhh
Q 002091          809 -----RPI----------------------------PKRKGFWCF---SPPPE-----IGCQVH--GGLCGIESSFCLLE  845 (968)
Q Consensus       809 -----~~~----------------------------~~~~~~~~~---~~~~~-----~~c~~h--~~~c~~~~~~~l~~  845 (968)
                           ...                            ...+|.-.+   ..+..     .-|-+-  -..++.++...++.
T Consensus       570 v~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~  649 (2102)
T PLN03200        570 TALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLAT  649 (2102)
T ss_pred             HHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence                 000                            000110000   00000     001110  11224555667889


Q ss_pred             cCChHHHHhhccCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHHhcChhhH
Q 002091          846 ANAVRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERIFRLPEFK  925 (968)
Q Consensus       846 ~g~i~~Lv~lL~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  925 (968)
                      .|+|+||+.+|.+++.+++..+++||.+++.+. ..+....+.+.|++++|++++.+.+.++.+.|+.+|.+++.+.+.+
T Consensus       650 agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~-~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~  728 (2102)
T PLN03200        650 DEIINPCIKLLTNNTEAVATQSARALAALSRSI-KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVA  728 (2102)
T ss_pred             cCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC-CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHH
Confidence            999999999999999999999999999999321 2245567789999999999999999999999999999999999988


Q ss_pred             HHhccc-CCchhhhhcccCCchhhHHHHHHHHHHhhc
Q 002091          926 QKYGKS-AQMPLVDLTQRGNSSMKSLSARVLAHLNVL  961 (968)
Q Consensus       926 ~~~~~~-~~~~Lv~ll~~~~~~~~~~A~~aL~~L~~~  961 (968)
                      .++... +..+|++++++|+++.|+.|+++|.+|.+-
T Consensus       729 ~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~  765 (2102)
T PLN03200        729 AEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKH  765 (2102)
T ss_pred             HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhC
Confidence            877754 488899999999999999999999999754

>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2734 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots Back     alignment and domain information
>KOG2734 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5369 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] Back     alignment and domain information
>COG5369 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG4367 consensus Predicted Zn-finger protein [Function unknown] Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>PF11841 DUF3361: Domain of unknown function (DUF3361) Back     alignment and domain information
>PF11841 DUF3361: Domain of unknown function (DUF3361) Back     alignment and domain information
>KOG2979 consensus Protein involved in DNA repair [General function prediction only] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 Back     alignment and domain information
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] Back     alignment and domain information
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function Back     alignment and domain information
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 Back     alignment and domain information
>KOG3113 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 Back     alignment and domain information
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins Back     alignment and domain information
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>KOG1788 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function Back     alignment and domain information
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] Back     alignment and domain information
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D Back     alignment and domain information
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle Back     alignment and domain information
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 Back     alignment and domain information
>KOG1566 consensus Conserved protein Mo25 [Function unknown] Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] Back     alignment and domain information
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] Back     alignment and domain information
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0396 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query968
1t1h_A78 Nmr Solution Structure Of The U Box Domain From Atp 2e-10
4db6_A210 Designed Armadillo Repeat Protein (Yiiim3aii) Lengt 6e-07
4db8_A252 Designed Armadillo-Repeat Protein Length = 252 2e-06
4db8_A252 Designed Armadillo-Repeat Protein Length = 252 3e-05
4db9_A210 Designed Armadillo Repeat Protein (Yiiim3aiii) Leng 2e-06
4db9_A210 Designed Armadillo Repeat Protein (Yiiim3aiii) Leng 3e-05
4dba_A210 Designed Armadillo Repeat Protein (Yiim3aii) Length 4e-06
4dba_A210 Designed Armadillo Repeat Protein (Yiim3aii) Length 1e-04
1bk6_A422 Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng 7e-06
1wa5_B530 Crystal Structure Of The Exportin Cse1p Complexed W 1e-05
1un0_A443 Crystal Structure Of Yeast Karyopherin (Importin) A 1e-05
2c1t_A454 Structure Of The Kap60p:nup2 Complex Length = 454 2e-05
1ee5_A424 Yeast Karyopherin (Importin) Alpha In A Complex Wit 2e-05
1bk5_A422 Karyopherin Alpha From Saccharomyces Cerevisiae Len 2e-05
1ee4_A423 Crystal Structure Of Yeast Karyopherin (Importin) A 2e-05
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78 Back     alignment and structure 
Iteration: 1

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 264 QSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKTLRQ 323
           + F CPI+ ++M DPV  S+GQT+ERS+I+KW   G+  CP +   L  + L PN  L+ 
Sbjct: 7   EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKS 66
Query: 324 SIEEWKDRN 332
            I  W + N
Sbjct: 67  LIALWCESN 75
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210 Back     alignment and structure
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252 Back     alignment and structure
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252 Back     alignment and structure
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210 Back     alignment and structure
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210 Back     alignment and structure
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210 Back     alignment and structure
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210 Back     alignment and structure
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422 Back     alignment and structure
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530 Back     alignment and structure
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443 Back     alignment and structure
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454 Back     alignment and structure
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424 Back     alignment and structure
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422 Back     alignment and structure
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query968
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 9e-57
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 8e-38
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 2e-35
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 3e-18
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 3e-56
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 4e-14
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 3e-55
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 5e-37
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 2e-35
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 9e-34
2f42_A179 STIP1 homology and U-box containing protein 1; cha 8e-32
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 5e-30
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 1e-19
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 8e-19
3nmz_A458 APC variant protein; protein-protein complex, arma 1e-28
3nmz_A458 APC variant protein; protein-protein complex, arma 1e-20
3nmz_A458 APC variant protein; protein-protein complex, arma 7e-14
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 2e-28
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 1e-25
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 3e-21
3oqs_A 510 Importin subunit alpha-2; importin alpha, karyophe 3e-16
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 5e-28
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 1e-25
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 2e-18
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 3e-15
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 7e-28
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 4e-22
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 3e-16
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 3e-14
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 2e-24
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 4e-23
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 9e-22
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 1e-16
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 1e-14
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 6e-10
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 1e-07
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 1e-23
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 3e-23
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 2e-22
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 4e-20
3now_A 810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 5e-17
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 2e-21
3l6x_A 584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 1e-15
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 2e-05
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 4e-21
3m62_A968 Ubiquitin conjugation factor E4; armadillo-like re 7e-21
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 8e-20
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 9e-19
1xm9_A 457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-19
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 4e-18
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 8e-17
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 1e-16
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 2e-16
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 2e-16
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 2e-16
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 3e-16
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 4e-09
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 4e-16
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 1e-12
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 3e-12
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 2e-11
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 6e-09
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 5e-08
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 2e-11
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 6e-11
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 2e-09
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 3e-09
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 9e-09
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 1e-09
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 1e-09
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 4e-04
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 9e-08
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 1e-07
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 1e-06
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 1e-06
1z6u_A150 NP95-like ring finger protein isoform B; structura 2e-06
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 7e-06
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 1e-05
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 2e-05
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 2e-05
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 3e-05
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 4e-05
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 6e-05
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 4e-04
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
 Score =  204 bits (520), Expect = 9e-57
 Identities = 95/549 (17%), Positives = 193/549 (35%), Gaps = 49/549 (8%)

Query: 381 AVESIVRSLGRR-IEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVT-MASSDDNQAS 438
           A+  + + L          A  ++ +LS     R  I      +  +V  M +++D + +
Sbjct: 18  AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 439 RDAQELLENLSFSDDNVVQMAKANYFKHLLQRLSAGPESVKMRMATTLAEMEL-TDHHKA 497
           R     L NLS   + ++ + K+     L++ L +  +SV     TTL  + L  +  K 
Sbjct: 78  RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 137

Query: 498 SLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSSV-PQNGLQMIKEGAVGPLVDLLLHH 556
           ++     L  ++ L+++ +++   +    L+ L+    ++ L ++  G    LV+++   
Sbjct: 138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM--R 195

Query: 557 SSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQRIL 616
           + +   L   T+  +  L+V       S     ++E+   +  L   +      + Q  L
Sbjct: 196 TYTYEKLLWTTSRVLKVLSV------CSSNKPAIVEAGG-MQALGLHLTDPSQRLVQNCL 248

Query: 617 QTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDE--AI 674
            T   L  + +             +  LVQL   D+ NV   A  +   L  +  +   +
Sbjct: 249 WTLRNLSDAATK-----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM 303

Query: 675 IREHVGQKCLETLVTIIQSSHNEEEI-ASAMGILSKL----PEVPQFTQWLLDAGALPIV 729
           + +  G   +E LV  +  + + E+I   A+  L  L     E       +     LP+V
Sbjct: 304 VCQVGG---IEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 360

Query: 730 LNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRAAEAGVIPKLVQLLEYGTTLT 789
           +  L             +  A   L R  A           E G IP+LVQLL      T
Sbjct: 361 VKLLHPP------SHWPLIKATVGLIRNLA-LCPANHAPLREQGAIPRLVQLLVRAHQDT 413

Query: 790 KEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQVHGGLCGIESSFCLLEANAV 849
           +   +    +           I +                +H     + +   +   N +
Sbjct: 414 QRRTSMGGTQQQFVEGVRMEEIVE-----------GCTGALHILARDVHNRIVIRGLNTI 462

Query: 850 RPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQE 909
              V++L  P       +   L  L + +     ++ +E   A   +   L S +  +  
Sbjct: 463 PLFVQLLYSPIENIQRVAAGVLCELAQDK---EAAEAIEAEGATAPLTELLHSRNEGVAT 519

Query: 910 KALDSVERI 918
            A   + R+
Sbjct: 520 YAAAVLFRM 528
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78 Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85 Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98 Back     alignment and structure
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61 Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170 Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124 Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165 Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150 Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99 Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100 Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116 Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141 Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query968
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 100.0
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 100.0
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 100.0
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 100.0
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 100.0
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 100.0
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 100.0
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 100.0
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 100.0
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 100.0
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 100.0
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 100.0
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 100.0
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 100.0
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 100.0
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 100.0
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 100.0
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 100.0
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 100.0
3nmz_A458 APC variant protein; protein-protein complex, arma 100.0
3nmz_A458 APC variant protein; protein-protein complex, arma 99.98
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.98
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.98
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.97
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 99.94
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 99.94
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 99.91
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 99.9
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.88
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.88
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.86
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.86
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 99.83
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 99.82
2f42_A179 STIP1 homology and U-box containing protein 1; cha 99.8
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 99.8
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 99.8
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 99.79
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 99.79
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 99.78
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.78
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 99.77
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 99.76
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.73
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 99.73
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 99.7
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 99.69
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.68
3m62_A968 Ubiquitin conjugation factor E4; armadillo-like re 99.67
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.66
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 99.66
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.6
3grl_A651 General vesicular transport factor P115; vesicle t 99.58
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 99.56
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 99.52
3grl_A651 General vesicular transport factor P115; vesicle t 99.52
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 99.48
1qgr_A 876 Protein (importin beta subunit); transport recepto 99.47
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.44
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.42
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 99.36
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.35
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.35
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 99.35
1z6u_A150 NP95-like ring finger protein isoform B; structura 99.31
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.31
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.27
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.27
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.26
1qgr_A 876 Protein (importin beta subunit); transport recepto 99.24
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 99.22
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.2
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 99.17
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 99.17
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.15
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 99.14
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 99.14
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 99.13
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.13
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 99.13
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 99.12
2ecw_A85 Tripartite motif-containing protein 30; metal bind 99.12
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.11
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.1
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 99.1
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 99.1
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 99.08
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 99.08
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 99.07
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 99.07
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.07
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 99.03
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.0
2ysl_A73 Tripartite motif-containing protein 31; ring-type 98.97
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 98.96
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 98.95
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 98.95
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 98.94
2ysj_A63 Tripartite motif-containing protein 31; ring-type 98.93
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 98.86
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 98.82
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 98.81
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 98.74
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 98.71
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 98.68
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 98.68
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 98.62
2ect_A78 Ring finger protein 126; metal binding protein, st 98.58
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 98.52
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 98.48
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 98.47
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 98.47
2ecm_A55 Ring finger and CHY zinc finger domain- containing 98.46
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 98.42
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 98.41
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 98.37
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 98.34
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 98.34
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.33
4ic3_A74 E3 ubiquitin-protein ligase XIAP; ring domain, zin 98.32
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 98.32
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 98.29
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.27
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 98.26
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 98.15
1wim_A94 KIAA0161 protein; ring finger domain, UBCM4-intera 98.1
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.04
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 98.01
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.01
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 97.99
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 97.98
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 97.97
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.95
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 97.93
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.92
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.9
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 97.89
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.87
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 97.86
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 97.78
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.78
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 97.78
3dpl_R106 Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST 97.73
3t6p_A345 Baculoviral IAP repeat-containing protein 2; ring, 97.71
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.59
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.59
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 97.54
2ea5_A68 Cell growth regulator with ring finger domain prot 97.54
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 97.44
2d8s_A80 Cellular modulator of immune recognition; C-MIR, m 97.39
2x1g_F 971 Cadmus; transport protein, developmental protein, 97.39
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 97.38
2x19_B 963 Importin-13; nuclear transport, protein transport; 97.3
4a0k_B117 E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi 97.28
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 97.26
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.26
2x1g_F 971 Cadmus; transport protein, developmental protein, 97.22
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 97.19
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 97.14
2x19_B 963 Importin-13; nuclear transport, protein transport; 97.13
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 97.08
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 96.77
2fv2_A268 RCD1 required for cell differentiation1 homolog; a 96.75
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 96.52
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 96.5
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 96.26
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 96.2
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 96.12
2f42_A179 STIP1 homology and U-box containing protein 1; cha 96.09
2ct0_A74 Non-SMC element 1 homolog; ring domain, structural 95.97
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 95.97
2fv2_A268 RCD1 required for cell differentiation1 homolog; a 95.95
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 95.52
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 95.36
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 95.27
3m62_A968 Ubiquitin conjugation factor E4; armadillo-like re 95.25
1vyx_A60 ORF K3, K3RING; zinc-binding protein, ring domain, 95.13
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 94.94
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 94.69
3vk6_A101 E3 ubiquitin-protein ligase hakai; HYB, phosphotyr 94.5
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 94.06
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 93.84
3k1l_B381 Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A 93.11
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 92.75
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 92.69
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 92.46
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 92.42
2jun_A101 Midline-1; B-BOX, TRIM, ring finger, alternative s 92.26
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 91.83
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 91.6
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 90.93
3i2d_A371 E3 SUMO-protein ligase SIZ1; signal transduction, 90.22
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 89.77
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 89.66
3ebb_A304 Phospholipase A2-activating protein; armadillo rep 88.28
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 87.61
3ebb_A304 Phospholipase A2-activating protein; armadillo rep 87.61
4fo9_A360 E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom 86.73
3oc3_A 800 Helicase MOT1, MOT1; regulation of transcription, 84.93
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 84.1
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 83.27
3c2g_A619 SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev 82.23
3nw0_A238 Non-structural maintenance of chromosomes element 80.79
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
Probab=100.00  E-value=1.4e-39  Score=387.10  Aligned_cols=503  Identities=18%  Similarity=0.185  Sum_probs=413.5

Q ss_pred             chhHHHHHHhhcc-ChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhcC-CCHHHHHHHHHHHHhccCCchhHH
Q 002091          379 DDAVESIVRSLGR-RIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMASS-DDNQASRDAQELLENLSFSDDNVV  456 (968)
Q Consensus       379 ~~~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~s-~~~~~~~~a~~~L~~Ls~~~~n~~  456 (968)
                      .|+++.+++.|.+ ++..+..|+..|..++.++.++..+....|+++.|+.+|.+ +++.++..|+.+|.+++.+++++.
T Consensus        16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~   95 (529)
T 1jdh_A           16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL   95 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHH
Confidence            7889999999964 56789999999999999888887777646999999999964 589999999999999999888999


Q ss_pred             HHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccC-chhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC-CC
Q 002091          457 QMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELT-DHHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VP  534 (968)
Q Consensus       457 ~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~  534 (968)
                      .+.+.|+++.|+++|+++++.++..|+++|.+++.+ +..+..+.+.|+++.|+++|++++++++..++.+|.+++. ++
T Consensus        96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~  175 (529)
T 1jdh_A           96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ  175 (529)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCH
Confidence            999999999999999999999999999999999765 5667778889999999999999999999999999999996 57


Q ss_pred             ccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHH
Q 002091          535 QNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQR  614 (968)
Q Consensus       535 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~  614 (968)
                      +++..+.+.|+++.|+++|.+++  ....+..+..+|.+|+.++..+.       .+...|+++.++.++.+.++.++..
T Consensus       176 ~~~~~i~~~~~i~~L~~ll~~~~--~~~~~~~a~~~L~~l~~~~~~~~-------~~~~~g~~~~L~~ll~~~~~~~~~~  246 (529)
T 1jdh_A          176 ESKLIILASGGPQALVNIMRTYT--YEKLLWTTSRVLKVLSVCSSNKP-------AIVEAGGMQALGLHLTDPSQRLVQN  246 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTTSTTHHH-------HHHHTTHHHHHHTTTTSSCHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCC--hHHHHHHHHHHHHHHhcCcccHH-------HHHHCCCHHHHHHHHhCCChHHHHH
Confidence            88999999999999999998764  25677788999999998765544       3556789999999999999999999


Q ss_pred             HHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccC
Q 002091          615 ILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS  694 (968)
Q Consensus       615 al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~  694 (968)
                      ++++|.+++.......     ...++++.|+.++.++++.++..|+++|.+|+ .++++.+..+.+.|+++.|+.+|.+.
T Consensus       247 a~~~L~~l~~~~~~~~-----~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~-~~~~~~~~~~~~~~~v~~L~~ll~~~  320 (529)
T 1jdh_A          247 CLWTLRNLSDAATKQE-----GMEGLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRA  320 (529)
T ss_dssp             HHHHHHHHHTTCTTCS-----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT-TTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCChhhH-----HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh-cCCHHHHHHHHHcCChHHHHHHHHcc
Confidence            9999999997643322     12368999999999999999999999999998 66667788888999999999999874


Q ss_pred             -CCHHHHHHHHHHHhcCCC-CHH---hHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHH
Q 002091          695 -HNEEEIASAMGILSKLPE-VPQ---FTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRA  769 (968)
Q Consensus       695 -~~~~~~~~Al~~L~nL~~-~~~---~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~  769 (968)
                       .+.+++..|+++|+||+. +++   .+..+.+.|+++.|+.+|.++     .+..+++.++++|+|++.+  +..+..+
T Consensus       321 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~-----~~~~v~~~a~~~l~nl~~~--~~~~~~~  393 (529)
T 1jdh_A          321 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP-----SHWPLIKATVGLIRNLALC--PANHAPL  393 (529)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTT-----CCHHHHHHHHHHHHHHTTS--GGGHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccc-----cchHHHHHHHHHHHHHhcC--hhhhHHH
Confidence             347899999999999988 433   567889999999999999983     2358999999999999984  5566889


Q ss_pred             HHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCccc-ccCCCccCcccchHHhhcCC
Q 002091          770 AEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGC-QVHGGLCGIESSFCLLEANA  848 (968)
Q Consensus       770 ~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c-~~h~~~c~~~~~~~l~~~g~  848 (968)
                      .+.|++|.|+.++.++++.+|..|+|++.|.....+.  .+    ..+      ....+ .++....++++...+.+.|+
T Consensus       394 ~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~--~~----~~i------~~~~~~al~~L~~~~~~~~~l~~~~~  461 (529)
T 1jdh_A          394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV--RM----EEI------VEGCTGALHILARDVHNRIVIRGLNT  461 (529)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHC-----------CBTTB--CH----HHH------HHHHHHHHHHHTTSHHHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccc--cH----HHH------HHHHHHHHHHHhcCchHHHHHhccCC
Confidence            9999999999999998999999999999983211100  00    000      00000 01111123455677899999


Q ss_pred             hHHHHhhccCCChhhhHHHHHHHHhhhcccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHH
Q 002091          849 VRPLVRVLEDPDHGACEASLDALVTLIEGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERI  918 (968)
Q Consensus       849 i~~Lv~lL~~~~~~v~~~al~aL~~L~~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  918 (968)
                      +++|+.++.+++++++..++++|.++...   .+++..+.+.|+++.|.+++.++++.+++.|.++|.+|
T Consensus       462 v~~l~~ll~~~~~~v~~~a~~~l~~l~~~---~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          462 IPLFVQLLYSPIENIQRVAAGVLCELAQD---KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHTTS---HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHcCCchHHHHHHHHHHHHHhcC---HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999821   36788999999999999999999999999999999886
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Back     alignment and structure
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Back     alignment and structure
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Back     alignment and structure
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Back     alignment and structure
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} Back     alignment and structure
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* Back     alignment and structure
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 968
d1t1ha_78 g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre 7e-17
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 6e-16
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 1e-15
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 2e-12
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 1e-15
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 3e-15
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 4e-12
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 4e-11
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 8e-11
d1jdha_ 529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 0.004
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 4e-14
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 2e-08
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 1e-04
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 0.001
d2c2la280 g.44.1.2 (A:225-304) STIP1 homology and U box-cont 9e-12
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 2e-10
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 6e-08
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 3e-10
d1wgma_98 g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu 6e-08
d1rmda286 g.44.1.1 (A:1-86) V(D)J recombination activating p 6e-07
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 2e-06
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 5e-06
d1xqra1264 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp 8e-05
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 6e-04
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 0.002
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 0.004
d1g25a_65 g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi 0.004
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 74.0 bits (181), Expect = 7e-17
 Identities = 30/72 (41%), Positives = 43/72 (59%)

Query: 261 EPLQSFYCPITRDVMVDPVETSSGQTFERSAIEKWFSDGNNLCPLTMTVLDTSILRPNKT 320
           E  + F CPI+ ++M DPV  S+GQT+ERS+I+KW   G+  CP +   L  + L PN  
Sbjct: 4   EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYV 63

Query: 321 LRQSIEEWKDRN 332
           L+  I  W + N
Sbjct: 64  LKSLIALWCESN 75
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query968
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 100.0
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 100.0
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.96
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.95
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.93
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.9
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 99.83
d2c2la280 STIP1 homology and U box-containing protein 1, STU 99.81
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 99.77
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.71
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.67
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 99.59
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 99.57
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.49
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.44
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 99.4
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 99.37
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 99.36
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 99.25
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 99.09
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.97
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 98.86
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.86
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.85
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.76
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.73
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 98.73
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.67
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.67
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 98.57
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.53
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.53
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.53
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.46
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 98.45
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.43
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.36
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 98.35
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.29
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 98.25
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 98.04
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 97.84
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.8
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 97.76
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 97.63
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.49
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 96.47
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 96.02
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 95.79
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 95.78
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 95.62
d2c2la280 STIP1 homology and U box-containing protein 1, STU 95.54
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 95.49
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 95.16
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 93.67
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 91.95
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 91.13
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 89.87
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-36  Score=351.46  Aligned_cols=502  Identities=18%  Similarity=0.177  Sum_probs=406.0

Q ss_pred             chhHHHHHHhhcc-ChHHHHHHHHHHHHhccChhHHHHhhhccChHHHHHHhhc-CCCHHHHHHHHHHHHhccCCchhHH
Q 002091          379 DDAVESIVRSLGR-RIEERKLAVALLLELSTCNTLRDQIGDVQGCILLLVTMAS-SDDNQASRDAQELLENLSFSDDNVV  456 (968)
Q Consensus       379 ~~~v~~lv~~L~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-s~~~~~~~~a~~~L~~Ls~~~~n~~  456 (968)
                      .++++.|++.|.+ +...+..|+..|..+++++..+..+....|+++.|+.+|. +++.++++.|+.+|.+++.+++++.
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~   95 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL   95 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHH
Confidence            6789999999965 5678999999999999988888877765789999999996 5788999999999999999999999


Q ss_pred             HHHhCCchHHHHHHHhcCCHHHHHHHHHHHHHhccCc-hhhHHHhhcCchHHHHHhhhcCCHHHHHHHHHHHHHhcC-CC
Q 002091          457 QMAKANYFKHLLQRLSAGPESVKMRMATTLAEMELTD-HHKASLLEGNVLGPLLHLVSRGDIQMKKVAVKALRNLSS-VP  534 (968)
Q Consensus       457 ~i~~~g~v~~Lv~~L~~~~~~~~~~aa~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~  534 (968)
                      .+++.|+++.|+.+|+++++.++..|+++|.+++.+. ..+..+.+.|+|+.|+.+|+++++.++..++.+|.+++. ++
T Consensus        96 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~  175 (529)
T d1jdha_          96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ  175 (529)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhh
Confidence            9999999999999999999999999999999997654 566677789999999999999999999999999999996 55


Q ss_pred             ccHHHHHHcCChHHHHHHhcccCCCCcchHHHHHHHHHHhhcCcccccCCCCccccccchhHHHHHHHhhccCCHHHHHH
Q 002091          535 QNGLQMIKEGAVGPLVDLLLHHSSSSSSLREETATAIMHLAVSTMYQESSQTPVTLLESDKEIFMLFSLINLTGPNVQQR  614 (968)
Q Consensus       535 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~~~a~~~L~~La~~~~~~~~~~~~~~il~~~~~i~~l~~ll~~~~~~~~~~  614 (968)
                      +++..+.+.|+++.|+.++...+  ...++..+++++.+++.++..+.       .+...|+++.+..++.+.++.++.+
T Consensus       176 ~~~~~~~~~~~~~~L~~ll~~~~--~~~~~~~~~~~l~~ls~~~~~~~-------~~~~~g~~~~L~~ll~~~~~~~~~~  246 (529)
T d1jdha_         176 ESKLIILASGGPQALVNIMRTYT--YEKLLWTTSRVLKVLSVCSSNKP-------AIVEAGGMQALGLHLTDPSQRLVQN  246 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTTSTTHHH-------HHHHTTHHHHHHTTTTSSCHHHHHH
T ss_pred             HHHHHHHhcccchHHHHHHHhhh--hHHHHHHHHHHHhhhhccccccc-------hhhhhhhhhhHHHHhcccchhhhhh
Confidence            67788889999999999998755  26788999999999998765554       3566789999999999999999999


Q ss_pred             HHHHHHHhccCCChhhHHHHHhhcCchHHHHHhhccCChhHHHHHHHHHHHhccCCChhHHHHhhccccHHHHHHHhccC
Q 002091          615 ILQTFNALCRSPSAGNIKTTLTQCSAIPVLVQLCEHDNENVRANAVKLFCCLVDDGDEAIIREHVGQKCLETLVTIIQSS  694 (968)
Q Consensus       615 al~~L~~L~~~~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~~L~~Ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~  694 (968)
                      +++++.+++.......     ...|+++.|+.++.+++..++..|+++|++|+ ..+++....+.+.++++.|+.++...
T Consensus       247 a~~~l~~ls~~~~~~~-----~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~i~~~~~i~~Li~~l~~~  320 (529)
T d1jdha_         247 CLWTLRNLSDAATKQE-----GMEGLLGTLVQLLGSDDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRA  320 (529)
T ss_dssp             HHHHHHHHHTTCTTCS-----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT-TTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             hhhHHHhccccccchh-----hhhhcchhhhhhcccccHHHHHHHHHHHHhhc-cchhHHHHHHHHhhhHHHHHHHHHhh
Confidence            9999999975433221     22467999999999999999999999999998 66677777788889999999988643


Q ss_pred             -CCHHHHHHHHHHHhcCCC-C---HHhHHHHHHcCCHHHHHHHhhcCCCCCCchhHHHHHHHHHHhhccCCCCHHHHHHH
Q 002091          695 -HNEEEIASAMGILSKLPE-V---PQFTQWLLDAGALPIVLNFLKNGRQNDPNRFQVVENAVGALRRFTAPTNLEWQKRA  769 (968)
Q Consensus       695 -~~~~~~~~Al~~L~nL~~-~---~~~~~~l~~~g~l~~Lv~lL~~~~~~~~~~~~v~e~a~~aL~~L~~~~~~~~~~~~  769 (968)
                       ..++++..++.+|.+|+. .   +.....+...|+++.++.++..+     .+..+++.+++++++++.  +++.+..+
T Consensus       321 ~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~-----~~~~~~~~~~~~l~~l~~--~~~~~~~l  393 (529)
T d1jdha_         321 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP-----SHWPLIKATVGLIRNLAL--CPANHAPL  393 (529)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTT-----CCHHHHHHHHHHHHHHTT--SGGGHHHH
T ss_pred             hcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhcc-----chHHHHHHHHHHHhhcch--hhhhhhhh
Confidence             567788999999999986 2   33566778899999999999874     345688899999999998  57788899


Q ss_pred             HHcCChHHHHHHhhcCChHHHHHHHHHHhhhcccCCCCCCCCCCCCcccccCCCCCcccc-cCCCccCcccchHHhhcCC
Q 002091          770 AEAGVIPKLVQLLEYGTTLTKEHAATSLARFSKNSLGLSRPIPKRKGFWCFSPPPEIGCQ-VHGGLCGIESSFCLLEANA  848 (968)
Q Consensus       770 ~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~nl~~~s~~l~~~~~~~~~~~~~~~~~~~~c~-~h~~~c~~~~~~~l~~~g~  848 (968)
                      .+.|+++.|+.+|.+++..++..++++.......... .     ...      .....|. +|.....+.+...+.+.|+
T Consensus       394 ~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~------~~~~~~~al~~la~~~~~r~~~~~~~~  461 (529)
T d1jdha_         394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV-R-----MEE------IVEGCTGALHILARDVHNRIVIRGLNT  461 (529)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHC-----------CBTTB-C-----HHH------HHHHHHHHHHHHTTSHHHHHHHHHTTC
T ss_pred             hhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhccc-c-----hHH------HHHHHHHHHHHHccCHHHHHHHHHCCC
Confidence            9999999999999877665555444433222110000 0     000      0000000 0111113345566778999


Q ss_pred             hHHHHhhccCCChhhhHHHHHHHHhhh-cccccchhhHHHHhcCcHHHHHHHhcCCChHHHHHHHHHHHHH
Q 002091          849 VRPLVRVLEDPDHGACEASLDALVTLI-EGERLQNGSKVLEDANAIDRMVRFLSSPSPKLQEKALDSVERI  918 (968)
Q Consensus       849 i~~Lv~lL~~~~~~v~~~al~aL~~L~-~~~~~~~~~~~i~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  918 (968)
                      +++|+++|.++++.++..++.+|.+|+ ++    +....+.+.|+++.|++++.++|+.+++.|..+|.+|
T Consensus       462 i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~----~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         462 IPLFVQLLYSPIENIQRVAAGVLCELAQDK----EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHTTSH----HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhcCh----hhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999998 43    6778999999999999999999999999999999876
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure