Citrus Sinensis ID: 002152
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 959 | 2.2.26 [Sep-21-2011] | |||||||
| P55004 | 1115 | Phytochrome E OS=Ipomoea | N/A | no | 0.968 | 0.833 | 0.730 | 0.0 | |
| P42498 | 1112 | Phytochrome E OS=Arabidop | yes | no | 0.955 | 0.823 | 0.680 | 0.0 | |
| Q41046 | 1131 | Phytochrome OS=Pinus sylv | N/A | no | 0.953 | 0.808 | 0.672 | 0.0 | |
| P34094 | 1130 | Phytochrome B OS=Solanum | N/A | no | 0.952 | 0.807 | 0.668 | 0.0 | |
| P29130 | 1132 | Phytochrome B OS=Nicotian | N/A | no | 0.950 | 0.805 | 0.663 | 0.0 | |
| Q9ZS62 | 1131 | Phytochrome B1 OS=Solanum | N/A | no | 0.974 | 0.826 | 0.646 | 0.0 | |
| A2XFW2 | 1171 | Phytochrome B OS=Oryza sa | N/A | no | 0.958 | 0.784 | 0.640 | 0.0 | |
| Q10MG9 | 1171 | Phytochrome B OS=Oryza sa | yes | no | 0.958 | 0.784 | 0.640 | 0.0 | |
| P14713 | 1172 | Phytochrome B OS=Arabidop | no | no | 0.986 | 0.807 | 0.622 | 0.0 | |
| P93527 | 1178 | Phytochrome B OS=Sorghum | N/A | no | 0.958 | 0.780 | 0.636 | 0.0 |
| >sp|P55004|PHYE_IPONI Phytochrome E OS=Ipomoea nil GN=PHYE PE=2 SV=1 | Back alignment and function desciption |
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Score = 1416 bits (3665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 683/935 (73%), Positives = 787/935 (84%), Gaps = 6/935 (0%)
Query: 25 SDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAYL 84
S + +N GK I YNADA L+AEFEQS SGKSF+YSRSVI P+ V EE++TAYL
Sbjct: 11 SSSATSNLNTGKAIA-QYNADAKLMAEFEQSRESGKSFDYSRSVIHAPQNVTEEEMTAYL 69
Query: 85 SKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDARTLFT 144
S+IQRGGLIQPFGCMLA+EEP+F+I+G+SENC ++L L+S E E LIGIDARTLFT
Sbjct: 70 SRIQRGGLIQPFGCMLAIEEPSFKIVGFSENCFDLLGLKSGVEPPERMSLIGIDARTLFT 129
Query: 145 PPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPAL 204
S ASLAKA ASREISLLNPI VHS +KPFYA+LHRIDVGIVIDLEP+ S DPAL
Sbjct: 130 LSSRASLAKAVASREISLLNPIWVHSKIN--QKPFYAVLHRIDVGIVIDLEPANSADPAL 187
Query: 205 SLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEV 264
LAGAVQSQKLAV AISRLQ+LPGGDIG LCDTVVEDVQKLTGYDRVM+Y FHDD HGEV
Sbjct: 188 LLAGAVQSQKLAVRAISRLQSLPGGDIGTLCDTVVEDVQKLTGYDRVMVYKFHDDSHGEV 247
Query: 265 VSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKELKQPLCL 324
VSEIRRSDLEPYLG+H+PA DIPQAARFLFKQNRVRMICDC+A PV V+Q +ELKQPLCL
Sbjct: 248 VSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNAQPVKVLQCEELKQPLCL 307
Query: 325 VNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYA 384
VNSTLRSPHGCH +YM NMGSIASLVMAV+INS +SMKLWGLVVCHHTSPRY+PFPLRYA
Sbjct: 308 VNSTLRSPHGCHTKYMANMGSIASLVMAVVINSSESMKLWGLVVCHHTSPRYVPFPLRYA 367
Query: 385 CEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSIMDLVKCD 444
CEFL+QAFSLQLYMELQ+A QLAEK IL+TQ LLCDMLLRDAPF IVTQ+PSIMDLV+CD
Sbjct: 368 CEFLMQAFSLQLYMELQLASQLAEKKILQTQTLLCDMLLRDAPFGIVTQTPSIMDLVRCD 427
Query: 445 GAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGDCTGLSTDSLAEAGYPGAALLGQAVC 504
GAALYY G+CWL+GVTPTE+Q+KDIA WLL+NHGD TGLSTD L++AGYPGA LLG AV
Sbjct: 428 GAALYYNGKCWLLGVTPTETQVKDIAEWLLHNHGDSTGLSTDCLSDAGYPGAPLLGDAVS 487
Query: 505 GMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFLEVVKNRSF 564
GMATARITSKDFLFWFRSHTAKEVKWGGAKHHPE KD+GG+MHPRSSF AFLEVVK+RS
Sbjct: 488 GMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEDKDDGGRMHPRSSFIAFLEVVKSRSL 547
Query: 565 PWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVACEMVRLI 624
PWE SEINAIHSLQ++MRDS Q + EN K + QQN S ELSS+A E+VRL+
Sbjct: 548 PWEDSEINAIHSLQLIMRDSLQGI-GENYMKSVSSPQQNDSDGVRFYELSSMALELVRLV 606
Query: 625 ETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAVENLICRAL 684
ETAT PIFGVDSSG INGWNAK+AELTGL A+ A+GK LID+V HE+S + L+CRAL
Sbjct: 607 ETATVPIFGVDSSGLINGWNAKIAELTGLQANVAIGKYLIDDVTHEDSHETFKALMCRAL 666
Query: 685 LGEEDKNVELKLRKFELQKQHSVVYILVNACTSRDYKNNVKGVCFVGQDITHEKVLMDKF 744
GEED+NVE+KL KF VVY++VNACTSRDYKN++ GVCFVGQDIT EK +MDKF
Sbjct: 667 QGEEDRNVEVKLLKFGNHPTKEVVYLVVNACTSRDYKNDIIGVCFVGQDITPEKAVMDKF 726
Query: 745 IRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEVIGKMLPREIFGN 804
+RLQGDYEAIIQS+NPLIPPIFASDENACCSEWNAAME++TG ++ EVIGK LP EIFG
Sbjct: 727 VRLQGDYEAIIQSLNPLIPPIFASDENACCSEWNAAMERLTGLVKCEVIGKRLPGEIFGG 786
Query: 805 FCRMKGQDMLTKFMILLYQGITGQGTENFPFGFFNRQGQFVEVALTASRRTDAEGKVIGC 864
CR+KGQD LTKFMILLYQGI+G TE FGFF+R+G F++V +TA++RTD G +IGC
Sbjct: 787 LCRLKGQDALTKFMILLYQGISGHDTEKLSFGFFDRKGNFIDVFITANKRTDERGNIIGC 846
Query: 865 FCFMQILVPDLQPALEAQGLE-DMDIYAKIKELAYIRQEVKNPLNGIRFVHKLLESSSIS 923
FCF+Q + D P + A+ +E D + + +KE AYI+Q++KNPLNGIRF HKLLE + S
Sbjct: 847 FCFLQTMAVD-HPQISARDIEDDRECLSTLKEFAYIQQQMKNPLNGIRFTHKLLEGTVTS 905
Query: 924 ENQRQYLETSDACERQIMTIIDGMDLRCIEEGRCV 958
++Q+Q+LETS+ACE+QI++II+ MD I +G V
Sbjct: 906 DHQKQFLETSEACEKQILSIIENMDSGGIVDGNRV 940
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Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. Photoconversion of Pr to Pfr induces an array of morphogenic responses, whereas reconversion of Pfr to Pr cancels the induction of those responses. Pfr controls the expression of a number of nuclear genes including those encoding the small subunit of ribulose-bisphosphate carboxylase, chlorophyll A/B binding protein, protochlorophyllide reductase, rRNA, etc. It also controls the expression of its own gene(s) in a negative feedback fashion. Ipomoea nil (taxid: 35883) |
| >sp|P42498|PHYE_ARATH Phytochrome E OS=Arabidopsis thaliana GN=PHYE PE=1 SV=2 | Back alignment and function description |
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| >sp|Q41046|PHY_PINSY Phytochrome OS=Pinus sylvestris PE=2 SV=1 | Back alignment and function description |
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| >sp|P34094|PHYB_SOLTU Phytochrome B OS=Solanum tuberosum GN=PHYB PE=3 SV=2 | Back alignment and function description |
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| >sp|P29130|PHYB_TOBAC Phytochrome B OS=Nicotiana tabacum GN=PHYB PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9ZS62|PHYB1_SOLLC Phytochrome B1 OS=Solanum lycopersicum GN=PHYB1 PE=2 SV=1 | Back alignment and function description |
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| >sp|A2XFW2|PHYB_ORYSI Phytochrome B OS=Oryza sativa subsp. indica GN=PHYB PE=3 SV=2 | Back alignment and function description |
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| >sp|Q10MG9|PHYB_ORYSJ Phytochrome B OS=Oryza sativa subsp. japonica GN=PHYB PE=2 SV=1 | Back alignment and function description |
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| >sp|P14713|PHYB_ARATH Phytochrome B OS=Arabidopsis thaliana GN=PHYB PE=1 SV=1 | Back alignment and function description |
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| >sp|P93527|PHYB_SORBI Phytochrome B OS=Sorghum bicolor GN=PHYB PE=3 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 959 | ||||||
| 255557437 | 1131 | phytochrome B, putative [Ricinus communi | 0.986 | 0.836 | 0.754 | 0.0 | |
| 183239028 | 1124 | phytochrome E [Vitis riparia] | 0.974 | 0.831 | 0.760 | 0.0 | |
| 225463382 | 1124 | PREDICTED: phytochrome E [Vitis vinifera | 0.974 | 0.831 | 0.755 | 0.0 | |
| 147775698 | 1162 | hypothetical protein VITISV_030984 [Viti | 0.974 | 0.804 | 0.751 | 0.0 | |
| 1730566 | 1115 | RecName: Full=Phytochrome E gi|1145714|g | 0.968 | 0.833 | 0.730 | 0.0 | |
| 356532946 | 1120 | PREDICTED: phytochrome E-like [Glycine m | 0.979 | 0.838 | 0.702 | 0.0 | |
| 6708129 | 1137 | phytochrome E [Solanum lycopersicum] | 0.964 | 0.813 | 0.708 | 0.0 | |
| 449459392 | 1134 | PREDICTED: phytochrome E-like [Cucumis s | 0.949 | 0.803 | 0.710 | 0.0 | |
| 356556523 | 1121 | PREDICTED: phytochrome E-like [Glycine m | 0.963 | 0.824 | 0.700 | 0.0 | |
| 224285845 | 1132 | unknown [Picea sitchensis] | 0.986 | 0.835 | 0.666 | 0.0 |
| >gi|255557437|ref|XP_002519749.1| phytochrome B, putative [Ricinus communis] gi|223541166|gb|EEF42722.1| phytochrome B, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1525 bits (3949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 725/961 (75%), Positives = 829/961 (86%), Gaps = 15/961 (1%)
Query: 1 MGLQGNRETTNSIGGGHNTTPFKSSDAKMKPV---NKGKTIIDHYNADAGLLAEFEQSVA 57
MG Q RE TT S+ + MKP ++ I YNADAGLLAEFEQS
Sbjct: 1 MGFQNARERGT-------TTLSSSAASSMKPFATNSENTATIAQYNADAGLLAEFEQSGV 53
Query: 58 SGKSFNYSRSVISPPEGVPEEQITAYLSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCL 117
SGKSFNYSRSV+S P VPEEQITAYLS+IQRGGLIQPFGCM+A+EEPTFRII YSENC
Sbjct: 54 SGKSFNYSRSVLSAPHNVPEEQITAYLSRIQRGGLIQPFGCMVAIEEPTFRIISYSENCF 113
Query: 118 EMLDLRSRS--EDFELNGLIGIDARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSI 175
+L L + S E ++ GLIGID R LFTP SGASL+KAAASREIS+LNPI V+S R+
Sbjct: 114 HLLGLSASSVLESNQVKGLIGIDVRALFTPQSGASLSKAAASREISMLNPIWVYS--RTS 171
Query: 176 EKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLC 235
+KPFYAILHRIDVGIVIDLEP++SGDP LSLAGAVQSQKLAV AISRLQ+LPGGDIG+LC
Sbjct: 172 QKPFYAILHRIDVGIVIDLEPARSGDPVLSLAGAVQSQKLAVRAISRLQSLPGGDIGMLC 231
Query: 236 DTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFK 295
DTVVEDVQKLTGYDRVM+Y FHDDDHGEV+SEIRRSDLEPYLG+H+PA DIPQAARFLFK
Sbjct: 232 DTVVEDVQKLTGYDRVMVYKFHDDDHGEVLSEIRRSDLEPYLGLHYPATDIPQAARFLFK 291
Query: 296 QNRVRMICDCHAIPVMVIQSKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVII 355
QNRVRMICDCHA PV VIQS+ELK PLCLVNSTLRSPHGCH QYM NMGSIASLVMAV+I
Sbjct: 292 QNRVRMICDCHANPVRVIQSEELKHPLCLVNSTLRSPHGCHTQYMANMGSIASLVMAVVI 351
Query: 356 NSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQ 415
N DS KLWGLVVCHHTSPRY+PFPLRYACEFL+QAF LQLYMELQ+A +L EK IL+TQ
Sbjct: 352 NGNDSTKLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMELQLAAKLVEKKILQTQ 411
Query: 416 VLLCDMLLRDAPFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLN 475
LLCDMLLRDAPF IVTQSPSIMDLVKCDGAALYY G+CWL+G+TPTESQ+KDIA WLLN
Sbjct: 412 TLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALYYRGKCWLLGITPTESQVKDIADWLLN 471
Query: 476 NHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKH 535
NHGD TGL+TDSLA+AGYPGA LLG AVCGMATARITS+DFLFWFRSHTAKE+KWGGAKH
Sbjct: 472 NHGDSTGLTTDSLADAGYPGALLLGDAVCGMATARITSRDFLFWFRSHTAKEIKWGGAKH 531
Query: 536 HPEHKDNGGKMHPRSSFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSK 595
HPE KD+G +MHPRSSF AFLEVVK+RS PWEVSEINAIHSLQ++MRDSFQ+M E++ SK
Sbjct: 532 HPEDKDDGQRMHPRSSFNAFLEVVKSRSMPWEVSEINAIHSLQLIMRDSFQDM-EDSASK 590
Query: 596 VQGNTQQNGSKMQGVDELSSVACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPA 655
N QQ + +QG+DELSSVACEMVRLIETATAPIFGVDS+G++NGWNAK+AELTGL A
Sbjct: 591 AMVNAQQTDTDVQGIDELSSVACEMVRLIETATAPIFGVDSAGSVNGWNAKIAELTGLQA 650
Query: 656 SEAMGKSLIDEVVHEESQGAVENLICRALLGEEDKNVELKLRKFELQKQHSVVYILVNAC 715
SEAMGKSL+ EVVH++S VE+L+CRAL GEEDKNVELKLRKF L +Q+S V+++ NAC
Sbjct: 651 SEAMGKSLVREVVHKDSYEFVESLLCRALQGEEDKNVELKLRKFGLHQQNSAVFVVANAC 710
Query: 716 TSRDYKNNVKGVCFVGQDITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCS 775
TSRDY NNV GVCFVGQD+T EK++MDKF+RLQGDY+ II+S+NPLIPPIFASDENACC
Sbjct: 711 TSRDYANNVIGVCFVGQDVTSEKIVMDKFLRLQGDYKVIIESLNPLIPPIFASDENACCC 770
Query: 776 EWNAAMEKVTGWMRHEVIGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGTENFPF 835
EWNAAME++TG R EVIGKMLP EIFG CR+K QD LTKFMILLY+G++ Q T+ FPF
Sbjct: 771 EWNAAMERLTGRTRQEVIGKMLPGEIFGGLCRLKDQDTLTKFMILLYRGLSDQDTDKFPF 830
Query: 836 GFFNRQGQFVEVALTASRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKE 895
GFFNRQG+FVEV LTA++RTDA+GK IGCFCF+Q++ PDLQ L+ ED + K+K+
Sbjct: 831 GFFNRQGKFVEVFLTANKRTDADGKTIGCFCFLQVIGPDLQQTLDEHKQEDQESLLKLKQ 890
Query: 896 LAYIRQEVKNPLNGIRFVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEG 955
LAYIR+E+K+PL+GIRF HKLLE ++ SE+Q+Q+LETSDACE+QIMTII+ +DL +EEG
Sbjct: 891 LAYIREEMKSPLSGIRFTHKLLEDTATSEHQKQFLETSDACEKQIMTIIEDIDLAKLEEG 950
Query: 956 R 956
+
Sbjct: 951 K 951
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|183239028|gb|ACC60972.1| phytochrome E [Vitis riparia] | Back alignment and taxonomy information |
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| >gi|225463382|ref|XP_002271671.1| PREDICTED: phytochrome E [Vitis vinifera] gi|183239020|gb|ACC60968.1| phytochrome E [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147775698|emb|CAN62723.1| hypothetical protein VITISV_030984 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|1730566|sp|P55004.1|PHYE_IPONI RecName: Full=Phytochrome E gi|1145714|gb|AAA84970.1| phytochrome E [Ipomoea nil] | Back alignment and taxonomy information |
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| >gi|356532946|ref|XP_003535030.1| PREDICTED: phytochrome E-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|6708129|gb|AAF25812.1|AF178571_1 phytochrome E [Solanum lycopersicum] | Back alignment and taxonomy information |
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| >gi|449459392|ref|XP_004147430.1| PREDICTED: phytochrome E-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356556523|ref|XP_003546574.1| PREDICTED: phytochrome E-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|224285845|gb|ACN40636.1| unknown [Picea sitchensis] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 959 | ||||||
| TAIR|locus:2005536 | 1112 | PHYE "phytochrome E" [Arabidop | 0.955 | 0.823 | 0.680 | 0.0 | |
| TAIR|locus:2005515 | 1172 | PHYB "AT2G18790" [Arabidopsis | 0.983 | 0.804 | 0.610 | 3.59999944711e-318 | |
| TAIR|locus:2005535 | 1164 | PHYD "phytochrome D" [Arabidop | 0.852 | 0.702 | 0.629 | 9.1e-290 | |
| TAIR|locus:2012300 | 1122 | PHYA "phytochrome A" [Arabidop | 0.917 | 0.784 | 0.523 | 3e-252 | |
| TAIR|locus:2165199 | 1111 | PHYC "phytochrome C" [Arabidop | 0.938 | 0.810 | 0.512 | 3.4e-251 | |
| UNIPROTKB|P06593 | 1129 | PHYA3 "Phytochrome A type 3" [ | 0.809 | 0.687 | 0.509 | 3.4e-212 | |
| UNIPROTKB|Q55168 | 748 | cph1 "Phytochrome-like protein | 0.501 | 0.643 | 0.339 | 3.8e-63 | |
| UNIPROTKB|Q7CY45 | 736 | Atu1990 "Bacteriophytochrome p | 0.415 | 0.540 | 0.324 | 5.6e-46 | |
| UNIPROTKB|Q48G81 | 745 | bphP "Bacteriophytochrome hist | 0.537 | 0.691 | 0.284 | 4.8e-44 | |
| UNIPROTKB|Q4K656 | 746 | bphP "Bacteriophytochrome hist | 0.504 | 0.648 | 0.283 | 8.3e-42 |
| TAIR|locus:2005536 PHYE "phytochrome E" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3326 (1175.9 bits), Expect = 0., P = 0.
Identities = 643/945 (68%), Positives = 766/945 (81%)
Query: 24 SSDAKMKPVNKGKTIIDHYNADAGLLAEFEQSVASGKSFNYSRSVISPPEGVPEEQITAY 83
S+ + MKP + K+ Y+ DA L A+F QS+ +GKSFNYS+SVISPP VP+E ITAY
Sbjct: 8 SAASNMKPQPQ-KSNTAQYSVDAALFADFAQSIYTGKSFNYSKSVISPPNHVPDEHITAY 66
Query: 84 LSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDL-----RSRSEDFE-LNGLIGI 137
LS IQRGGL+QPFGC++AVEEP+FRI+G S+N + L L S S +F+ + GLIGI
Sbjct: 67 LSNIQRGGLVQPFGCLIAVEEPSFRILGLSDNSSDFLGLLSLPSTSHSGEFDKVKGLIGI 126
Query: 138 DARTLFTPPSGASLAKAAASREISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPS 197
DARTLFTP SGASL+KAA+ EISLLNP+LVHS R+ +KPFYAILHRID GIV+DLEP+
Sbjct: 127 DARTLFTPSSGASLSKAASFTEISLLNPVLVHS--RTTQKPFYAILHRIDAGIVMDLEPA 184
Query: 198 KSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFH 257
KSGDPAL+LAGAVQSQKLAV AISRLQ+LPGGDIG LCDTVVEDVQ+LTGYDRVM+Y FH
Sbjct: 185 KSGDPALTLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQRLTGYDRVMVYQFH 244
Query: 258 DDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQSKE 317
+DDHGEVVSEIRRSDLEPYLG+H+PA DIPQAARFLFKQNRVRMICDC+A PV V+QS+E
Sbjct: 245 EDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNATPVKVVQSEE 304
Query: 318 LKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYI 377
LK+PLCLVNSTLR+PHGCH QYM NMGS+ASL +A+++ KDS KLWGLVV HH SPRY+
Sbjct: 305 LKRPLCLVNSTLRAPHGCHTQYMANMGSVASLALAIVVKGKDSSKLWGLVVGHHCSPRYV 364
Query: 378 PFPLRYACEFLVQAFSLQLYMELQVAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQSPSI 437
PFPLRYACEFL+QAF LQL MELQ+A QLAEK +RTQ LLCDMLLRD +IVTQSP I
Sbjct: 365 PFPLRYACEFLMQAFGLQLQMELQLASQLAEKKAMRTQTLLCDMLLRDTVSAIVTQSPGI 424
Query: 438 MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNNHGD-CTGLSTDSLAEAGYPGA 496
MDLVKCDGAALYY G+CWLVGVTP ESQ+KD+ WL+ NHGD TGL+TDSL +AGYPGA
Sbjct: 425 MDLVKCDGAALYYKGKCWLVGVTPNESQVKDLVNWLVENHGDDSTGLTTDSLVDAGYPGA 484
Query: 497 ALLGQAVCGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEHKDNGGKMHPRSSFKAFL 556
LG AVCG+A A +SKD+L WFRS+TA +KWGGAKHHP+ KD+ G+MHPRSSF AFL
Sbjct: 485 ISLGDAVCGVAAAGFSSKDYLLWFRSNTASAIKWGGAKHHPKDKDDAGRMHPRSSFTAFL 544
Query: 557 EVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSV 616
EV K+RS PWE+SEI+AIHSL+++MR+SF + GN + +EL+S
Sbjct: 545 EVAKSRSLPWEISEIDAIHSLRLIMRESFTSSRPV----LSGN-----GVARDANELTSF 595
Query: 617 ACEMVRLIETATAPIFGVDSSGTINGWNAKVAELTGLPASEAMGKSLIDEVVHEESQGAV 676
CEMVR+IETATAPIFGVDSSG INGWN K AE+TGL ASEAMGKSL DE+V EES+ A+
Sbjct: 596 VCEMVRVIETATAPIFGVDSSGCINGWNKKTAEMTGLLASEAMGKSLADEIVQEESRAAL 655
Query: 677 ENLICRALLGEEDKNVELKLRKFELQKQH----SVVYILVNACTSRDYKNNVKGVCFVGQ 732
E+L+C+AL GEE+K+V LKLRKF Q H S V +LVN+CTSRDY N+ GVCFVGQ
Sbjct: 656 ESLLCKALQGEEEKSVMLKLRKFG-QNNHPDYSSDVCVLVNSCTSRDYTENIIGVCFVGQ 714
Query: 733 DITHEKVLMDKFIRLQGDYEAIIQSVNPLIPPIFASDENACCSEWNAAMEKVTGWMRHEV 792
DIT EK + D+FIRLQGDY+ I+QS+NPLIPPIFASDENACCSEWNAAMEK+TGW +HEV
Sbjct: 715 DITSEKAITDRFIRLQGDYKTIVQSLNPLIPPIFASDENACCSEWNAAMEKLTGWSKHEV 774
Query: 793 IGKMLPREIFGNFCRMKGQDMLTKFMILLYQGITGQGT-ENFPFGFFNRQGQFVEVALTA 851
IGKMLP E+FG FC++K QD LTKF+I LYQGI G E+ FFN++G+++E +LTA
Sbjct: 775 IGKMLPGEVFGVFCKVKCQDSLTKFLISLYQGIAGDNVPESSLVEFFNKEGKYIEASLTA 834
Query: 852 SRRTDAEGKVIGCFCFMQILVPDLQPALEAQGLEDMDIYAKIKELAYIRQEVKNPLNGIR 911
++ T+ EGKVI CF F+QI+ + + L L++ + EL Y+RQE+KNPLNGIR
Sbjct: 835 NKSTNIEGKVIRCFFFLQII--NKESGLSCPELKESA--QSLNELTYVRQEIKNPLNGIR 890
Query: 912 FVHKLLESSSISENQRQYLETSDACERQIMTIIDGMDLRCIEEGR 956
F HKLLESS IS +QRQ+LETSDACE+QI TII+ DL+ IEEG+
Sbjct: 891 FAHKLLESSEISASQRQFLETSDACEKQITTIIESTDLKSIEEGK 935
|
|
| TAIR|locus:2005515 PHYB "AT2G18790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2005535 PHYD "phytochrome D" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2012300 PHYA "phytochrome A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2165199 PHYC "phytochrome C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P06593 PHYA3 "Phytochrome A type 3" [Avena sativa (taxid:4498)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q55168 cph1 "Phytochrome-like protein cph1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q7CY45 Atu1990 "Bacteriophytochrome protein" [Agrobacterium fabrum str. C58 (taxid:176299)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q48G81 bphP "Bacteriophytochrome histidine kinase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q4K656 bphP "Bacteriophytochrome histidine kinase" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P30733 | PHYA_SOLTU | No assigned EC number | 0.5317 | 0.9499 | 0.8112 | N/A | no |
| P42498 | PHYE_ARATH | No assigned EC number | 0.6804 | 0.9551 | 0.8237 | yes | no |
| P42496 | PHY_ADICA | No assigned EC number | 0.5862 | 0.9447 | 0.8103 | N/A | no |
| P36505 | PHY1_PHYPA | No assigned EC number | 0.6060 | 0.9489 | 0.8038 | N/A | no |
| P55004 | PHYE_IPONI | No assigned EC number | 0.7304 | 0.9687 | 0.8331 | N/A | no |
| Q40762 | PHY_PICAB | No assigned EC number | 0.5852 | 0.9499 | 0.8019 | N/A | no |
| Q41046 | PHY_PINSY | No assigned EC number | 0.6723 | 0.9530 | 0.8081 | N/A | no |
| P33529 | PHY_MOUSC | No assigned EC number | 0.5631 | 0.9520 | 0.8122 | N/A | no |
| A2XM23 | PHYC_ORYSI | No assigned EC number | 0.5240 | 0.9624 | 0.8117 | N/A | no |
| P15001 | PHYA_PEA | No assigned EC number | 0.5192 | 0.9728 | 0.8300 | N/A | no |
| P29130 | PHYB_TOBAC | No assigned EC number | 0.6634 | 0.9509 | 0.8056 | N/A | no |
| P34094 | PHYB_SOLTU | No assigned EC number | 0.6688 | 0.9520 | 0.8079 | N/A | no |
| P06592 | PHYA_CUCPE | No assigned EC number | 0.5153 | 0.9499 | 0.8104 | N/A | no |
| O49934 | PHYA_POPTM | No assigned EC number | 0.5174 | 0.9509 | 0.8106 | N/A | no |
| P55141 | PHYA_PETCR | No assigned EC number | 0.5079 | 0.9426 | 0.8007 | N/A | no |
| P33530 | PHYA1_TOBAC | No assigned EC number | 0.5270 | 0.9509 | 0.8113 | N/A | no |
| Q01549 | PHY1_SELMA | No assigned EC number | 0.6213 | 0.9572 | 0.8095 | N/A | no |
| Q10MG9 | PHYB_ORYSJ | No assigned EC number | 0.6402 | 0.9582 | 0.7847 | yes | no |
| P93673 | PHYA_LATSA | No assigned EC number | 0.5217 | 0.9697 | 0.8274 | N/A | no |
| Q9ZS62 | PHYB1_SOLLC | No assigned EC number | 0.6467 | 0.9749 | 0.8267 | N/A | no |
| Q39557 | PHY2_CERPU | No assigned EC number | 0.6071 | 0.9739 | 0.8331 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 959 | |||
| COG4251 | 750 | COG4251, COG4251, Bacteriophytochrome (light-regul | 1e-108 | |
| pfam00360 | 183 | pfam00360, PHY, Phytochrome region | 1e-87 | |
| pfam08446 | 107 | pfam08446, PAS_2, PAS fold | 2e-47 | |
| pfam00989 | 113 | pfam00989, PAS, PAS fold | 1e-25 | |
| smart00065 | 149 | smart00065, GAF, Domain present in phytochromes an | 6e-21 | |
| pfam01590 | 143 | pfam01590, GAF, GAF domain | 3e-20 | |
| pfam00989 | 113 | pfam00989, PAS, PAS fold | 1e-17 | |
| pfam00512 | 66 | pfam00512, HisKA, His Kinase A (phospho-acceptor) | 1e-10 | |
| smart00388 | 66 | smart00388, HisKA, His Kinase A (phosphoacceptor) | 2e-10 | |
| pfam13426 | 101 | pfam13426, PAS_9, PAS domain | 1e-09 | |
| TIGR00229 | 124 | TIGR00229, sensory_box, PAS domain S-box | 2e-08 | |
| cd00130 | 103 | cd00130, PAS, PAS domain; PAS motifs appear in arc | 2e-07 | |
| COG2202 | 232 | COG2202, AtoS, FOG: PAS/PAC domain [Signal transdu | 4e-07 | |
| cd00082 | 65 | cd00082, HisKA, Histidine Kinase A (dimerization/p | 7e-07 | |
| cd00130 | 103 | cd00130, PAS, PAS domain; PAS motifs appear in arc | 1e-06 | |
| smart00091 | 67 | smart00091, PAS, PAS domain | 6e-06 | |
| COG2202 | 232 | COG2202, AtoS, FOG: PAS/PAC domain [Signal transdu | 4e-05 | |
| pfam08448 | 110 | pfam08448, PAS_4, PAS fold | 8e-04 | |
| pfam13426 | 101 | pfam13426, PAS_9, PAS domain | 0.001 |
| >gnl|CDD|226702 COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Score = 353 bits (907), Expect = e-108
Identities = 172/534 (32%), Positives = 260/534 (48%), Gaps = 55/534 (10%)
Query: 91 GLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDARTLFTPPSGAS 150
G IQP G +L ++E ++ SENC ++G + L GA
Sbjct: 24 GAIQPHGALLVLDEADLMVLQASENC---------------ANILGREPEDLLGRTLGAV 68
Query: 151 LAKAAASREISLLNPI-LVHSNSRSIE----KPFYAILHRIDVGIVIDLEPSKSGDPALS 205
L S L L N + F HR ++++ EP+ +G+ A
Sbjct: 69 LTSEQVPPLQSALTVGGLTTLNPTKMWTRKGGSFDVSAHRSKELLILEFEPAGTGETASF 128
Query: 206 LAGAVQSQKLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVV 265
L LA A++RLQ+ ++ L ++V+++TG+DRVMLY F +D GEV+
Sbjct: 129 LGFY----HLAKLAMNRLQSAA--NLRDLLSRTTQEVRRMTGFDRVMLYRFDEDGSGEVI 182
Query: 266 SEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCH--AIPVMVIQSKELKQPLC 323
+E +R DLE YLG+ +PA+DIPQ AR L+ QN +R+I D +PV+ + E +PL
Sbjct: 183 AEAKREDLESYLGLRYPASDIPQQARALYIQNPLRLIPDVSYTPVPVLPAVNPETNEPLD 242
Query: 324 LVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRY 383
L S LRS HL+Y+ NMG AS+ ++++++ KLWGL+ CHH SP+ IP+ +R
Sbjct: 243 LSYSVLRSVSPIHLEYLRNMGVGASMSISIVVDG----KLWGLIACHHQSPKVIPYEVRK 298
Query: 384 ACEFLVQAFSLQLYMELQ-----VAMQLAEKNILRTQVLLCDMLLRDAPFSIVTQS-PSI 437
ACEF Q S+++ Q +QL E LL M + +
Sbjct: 299 ACEFFGQVLSMEISALEQSEDADYRVQLTE----HHARLLRYMAHAADFVDGLIDHQDDL 354
Query: 438 MDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWLLNN-HGDCTGLSTDSLAEAGYPGA 496
+DL+ DGAAL +GGR LVG TP ++ + WL GD +TDSL++ YP A
Sbjct: 355 LDLMPADGAALCFGGRWHLVGETPPRPAVQRLLQWLAEREEGDV--FATDSLSQV-YPDA 411
Query: 497 ALLGQAVCGMATARIT--SKDFLFWFRSHTAKEVKWGGAKHHP-EHKDNGGKMHPRSSFK 553
G+ I+ ++L WFR + V WGG P E G ++ PR SF+
Sbjct: 412 EDYASVASGLLAIPISRVKSNYLLWFRPEVVQTVNWGGDPEKPYEAGPMGIRLTPRKSFE 471
Query: 554 AFLEVVKNRSFPWEVSEINAIHSLQ-----IVMRDSFQEMEEENDSKVQGNTQQ 602
+ E V+ +S PW EI A L+ IV+R + +E+ + + N +
Sbjct: 472 LWKETVRLQSQPWSEVEIEAALELRKAIVGIVLRHA-EELAQLRRELERSNAEL 524
|
Length = 750 |
| >gnl|CDD|215877 pfam00360, PHY, Phytochrome region | Back alignment and domain information |
|---|
| >gnl|CDD|203947 pfam08446, PAS_2, PAS fold | Back alignment and domain information |
|---|
| >gnl|CDD|216228 pfam00989, PAS, PAS fold | Back alignment and domain information |
|---|
| >gnl|CDD|214500 smart00065, GAF, Domain present in phytochromes and cGMP-specific phosphodiesterases | Back alignment and domain information |
|---|
| >gnl|CDD|216590 pfam01590, GAF, GAF domain | Back alignment and domain information |
|---|
| >gnl|CDD|216228 pfam00989, PAS, PAS fold | Back alignment and domain information |
|---|
| >gnl|CDD|215963 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain | Back alignment and domain information |
|---|
| >gnl|CDD|214644 smart00388, HisKA, His Kinase A (phosphoacceptor) domain | Back alignment and domain information |
|---|
| >gnl|CDD|222120 pfam13426, PAS_9, PAS domain | Back alignment and domain information |
|---|
| >gnl|CDD|232884 TIGR00229, sensory_box, PAS domain S-box | Back alignment and domain information |
|---|
| >gnl|CDD|238075 cd00130, PAS, PAS domain; PAS motifs appear in archaea, eubacteria and eukarya | Back alignment and domain information |
|---|
| >gnl|CDD|225112 COG2202, AtoS, FOG: PAS/PAC domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|119399 cd00082, HisKA, Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase | Back alignment and domain information |
|---|
| >gnl|CDD|238075 cd00130, PAS, PAS domain; PAS motifs appear in archaea, eubacteria and eukarya | Back alignment and domain information |
|---|
| >gnl|CDD|214512 smart00091, PAS, PAS domain | Back alignment and domain information |
|---|
| >gnl|CDD|225112 COG2202, AtoS, FOG: PAS/PAC domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|219845 pfam08448, PAS_4, PAS fold | Back alignment and domain information |
|---|
| >gnl|CDD|222120 pfam13426, PAS_9, PAS domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 959 | |||
| COG4251 | 750 | Bacteriophytochrome (light-regulated signal transd | 100.0 | |
| PF00360 | 182 | PHY: Phytochrome region; InterPro: IPR013515 Phyto | 100.0 | |
| PRK13560 | 807 | hypothetical protein; Provisional | 99.97 | |
| TIGR02938 | 494 | nifL_nitrog nitrogen fixation negative regulator N | 99.93 | |
| PF08446 | 110 | PAS_2: PAS fold; InterPro: IPR013654 The PAS fold | 99.91 | |
| PRK09776 | 1092 | putative diguanylate cyclase; Provisional | 99.91 | |
| PRK11091 | 779 | aerobic respiration control sensor protein ArcB; P | 99.89 | |
| PRK09776 | 1092 | putative diguanylate cyclase; Provisional | 99.89 | |
| PRK13560 | 807 | hypothetical protein; Provisional | 99.86 | |
| TIGR02040 | 442 | PpsR-CrtJ transcriptional regulator PpsR. This mod | 99.86 | |
| PRK11359 | 799 | cyclic-di-GMP phosphodiesterase; Provisional | 99.8 | |
| TIGR02040 | 442 | PpsR-CrtJ transcriptional regulator PpsR. This mod | 99.77 | |
| PRK13559 | 361 | hypothetical protein; Provisional | 99.67 | |
| COG5002 | 459 | VicK Signal transduction histidine kinase [Signal | 99.66 | |
| PRK13557 | 540 | histidine kinase; Provisional | 99.65 | |
| PRK11006 | 430 | phoR phosphate regulon sensor protein; Provisional | 99.58 | |
| PRK11360 | 607 | sensory histidine kinase AtoS; Provisional | 99.57 | |
| PRK11073 | 348 | glnL nitrogen regulation protein NR(II); Provision | 99.54 | |
| TIGR02966 | 333 | phoR_proteo phosphate regulon sensor kinase PhoR. | 99.54 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 99.44 | |
| PF13426 | 104 | PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_ | 99.42 | |
| PF08448 | 110 | PAS_4: PAS fold; InterPro: IPR013656 The PAS fold | 99.41 | |
| PF01590 | 154 | GAF: GAF domain; InterPro: IPR003018 This domain i | 99.4 | |
| PRK10841 | 924 | hybrid sensory kinase in two-component regulatory | 99.4 | |
| PF13426 | 104 | PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_ | 99.39 | |
| PF00989 | 113 | PAS: PAS fold; InterPro: IPR013767 PAS domains are | 99.35 | |
| PRK11091 | 779 | aerobic respiration control sensor protein ArcB; P | 99.32 | |
| PF00989 | 113 | PAS: PAS fold; InterPro: IPR013767 PAS domains are | 99.31 | |
| PRK10618 | 894 | phosphotransfer intermediate protein in two-compon | 99.31 | |
| PF08448 | 110 | PAS_4: PAS fold; InterPro: IPR013656 The PAS fold | 99.3 | |
| PF00512 | 68 | HisKA: His Kinase A (phospho-acceptor) domain; Int | 99.23 | |
| PRK11086 | 542 | sensory histidine kinase DcuS; Provisional | 99.17 | |
| COG3852 | 363 | NtrB Signal transduction histidine kinase, nitroge | 99.14 | |
| smart00065 | 149 | GAF Domain present in phytochromes and cGMP-specif | 99.12 | |
| PRK10060 | 663 | RNase II stability modulator; Provisional | 99.11 | |
| PRK13559 | 361 | hypothetical protein; Provisional | 99.08 | |
| PRK13558 | 665 | bacterio-opsin activator; Provisional | 99.04 | |
| COG5000 | 712 | NtrY Signal transduction histidine kinase involved | 99.02 | |
| PRK13557 | 540 | histidine kinase; Provisional | 99.01 | |
| TIGR00229 | 124 | sensory_box PAS domain S-box. The PAS domain was p | 98.95 | |
| COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA | 98.94 | |
| PRK10060 | 663 | RNase II stability modulator; Provisional | 98.94 | |
| PF08447 | 91 | PAS_3: PAS fold; InterPro: IPR013655 The PAS fold | 98.93 | |
| PRK11359 | 799 | cyclic-di-GMP phosphodiesterase; Provisional | 98.92 | |
| PRK13558 | 665 | bacterio-opsin activator; Provisional | 98.86 | |
| PRK15053 | 545 | dpiB sensor histidine kinase DpiB; Provisional | 98.81 | |
| TIGR02938 | 494 | nifL_nitrog nitrogen fixation negative regulator N | 98.8 | |
| TIGR00229 | 124 | sensory_box PAS domain S-box. The PAS domain was p | 98.8 | |
| PF08447 | 91 | PAS_3: PAS fold; InterPro: IPR013655 The PAS fold | 98.76 | |
| COG3290 | 537 | CitA Signal transduction histidine kinase regulati | 98.74 | |
| PF13596 | 106 | PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D. | 98.73 | |
| KOG3558 | 768 | consensus Hypoxia-inducible factor 1/Neuronal PAS | 98.72 | |
| COG2203 | 175 | FhlA FOG: GAF domain [Signal transduction mechanis | 98.7 | |
| PF13492 | 129 | GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_ | 98.64 | |
| PRK11360 | 607 | sensory histidine kinase AtoS; Provisional | 98.59 | |
| PF13185 | 148 | GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ | 98.54 | |
| cd00130 | 103 | PAS PAS domain; PAS motifs appear in archaea, euba | 98.53 | |
| TIGR02966 | 333 | phoR_proteo phosphate regulon sensor kinase PhoR. | 98.46 | |
| PF12860 | 115 | PAS_7: PAS fold | 98.43 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 98.43 | |
| cd00130 | 103 | PAS PAS domain; PAS motifs appear in archaea, euba | 98.41 | |
| COG2202 | 232 | AtoS FOG: PAS/PAC domain [Signal transduction mech | 98.38 | |
| TIGR02956 | 968 | TMAO_torS TMAO reductase sytem sensor TorS. This p | 98.36 | |
| COG5002 | 459 | VicK Signal transduction histidine kinase [Signal | 98.36 | |
| PF13596 | 106 | PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D. | 98.32 | |
| PRK11073 | 348 | glnL nitrogen regulation protein NR(II); Provision | 98.32 | |
| PRK15347 | 921 | two component system sensor kinase SsrA; Provision | 98.32 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 98.25 | |
| COG2205 | 890 | KdpD Osmosensitive K+ channel histidine kinase [Si | 98.25 | |
| smart00388 | 66 | HisKA His Kinase A (phosphoacceptor) domain. Dimer | 98.24 | |
| PRK11107 | 919 | hybrid sensory histidine kinase BarA; Provisional | 98.21 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 98.19 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 98.19 | |
| PRK11006 | 430 | phoR phosphate regulon sensor protein; Provisional | 98.16 | |
| PF14598 | 111 | PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W | 98.14 | |
| COG3604 | 550 | FhlA Transcriptional regulator containing GAF, AAA | 98.1 | |
| PRK11061 | 748 | fused phosphoenolpyruvate-protein phosphotransfera | 98.08 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 98.06 | |
| PRK11466 | 914 | hybrid sensory histidine kinase TorS; Provisional | 98.04 | |
| PF14598 | 111 | PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W | 97.98 | |
| PF12860 | 115 | PAS_7: PAS fold | 97.97 | |
| PRK11086 | 542 | sensory histidine kinase DcuS; Provisional | 97.97 | |
| PRK09303 | 380 | adaptive-response sensory kinase; Validated | 97.91 | |
| KOG3559 | 598 | consensus Transcriptional regulator SIM1 [Transcri | 97.82 | |
| COG5000 | 712 | NtrY Signal transduction histidine kinase involved | 97.79 | |
| COG3290 | 537 | CitA Signal transduction histidine kinase regulati | 97.67 | |
| cd00082 | 65 | HisKA Histidine Kinase A (dimerization/phosphoacce | 97.66 | |
| COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA | 97.62 | |
| COG2202 | 232 | AtoS FOG: PAS/PAC domain [Signal transduction mech | 97.59 | |
| COG4191 | 603 | Signal transduction histidine kinase regulating C4 | 97.54 | |
| PRK10490 | 895 | sensor protein KdpD; Provisional | 97.45 | |
| KOG3560 | 712 | consensus Aryl-hydrocarbon receptor [Transcription | 97.42 | |
| PRK15053 | 545 | dpiB sensor histidine kinase DpiB; Provisional | 97.41 | |
| PRK13837 | 828 | two-component VirA-like sensor kinase; Provisional | 97.36 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 97.34 | |
| COG4251 | 750 | Bacteriophytochrome (light-regulated signal transd | 97.34 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 97.31 | |
| PF13188 | 64 | PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A. | 97.26 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 97.11 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 97.1 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 97.06 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 96.93 | |
| KOG1229 | 775 | consensus 3'5'-cyclic nucleotide phosphodiesterase | 96.7 | |
| PRK10604 | 433 | sensor protein RstB; Provisional | 96.64 | |
| PRK10815 | 485 | sensor protein PhoQ; Provisional | 96.58 | |
| PF13188 | 64 | PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A. | 96.57 | |
| PRK10364 | 457 | sensor protein ZraS; Provisional | 96.55 | |
| COG2461 | 409 | Uncharacterized conserved protein [Function unknow | 96.49 | |
| smart00091 | 67 | PAS PAS domain. PAS motifs appear in archaea, euba | 96.36 | |
| PF08670 | 148 | MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEK | 96.2 | |
| TIGR02916 | 679 | PEP_his_kin putative PEP-CTERM system histidine ki | 96.1 | |
| TIGR03785 | 703 | marine_sort_HK proteobacterial dedicated sortase s | 96.03 | |
| KOG3558 | 768 | consensus Hypoxia-inducible factor 1/Neuronal PAS | 95.68 | |
| PRK10337 | 449 | sensor protein QseC; Provisional | 95.46 | |
| COG4192 | 673 | Signal transduction histidine kinase regulating ph | 95.45 | |
| TIGR02916 | 679 | PEP_his_kin putative PEP-CTERM system histidine ki | 95.35 | |
| PRK10549 | 466 | signal transduction histidine-protein kinase BaeS; | 95.21 | |
| PRK09467 | 435 | envZ osmolarity sensor protein; Provisional | 95.17 | |
| PRK09835 | 482 | sensor kinase CusS; Provisional | 95.15 | |
| PRK11100 | 475 | sensory histidine kinase CreC; Provisional | 94.94 | |
| TIGR01386 | 457 | cztS_silS_copS heavy metal sensor kinase. Members | 94.91 | |
| TIGR02373 | 124 | photo_yellow photoactive yellow protein. Members o | 94.77 | |
| PRK10755 | 356 | sensor protein BasS/PmrB; Provisional | 94.75 | |
| COG3852 | 363 | NtrB Signal transduction histidine kinase, nitroge | 94.67 | |
| PRK09470 | 461 | cpxA two-component sensor protein; Provisional | 94.52 | |
| smart00086 | 43 | PAC Motif C-terminal to PAS motifs (likely to cont | 94.31 | |
| PF08670 | 148 | MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEK | 94.3 | |
| TIGR02851 | 180 | spore_V_T stage V sporulation protein T. Members o | 94.2 | |
| COG2461 | 409 | Uncharacterized conserved protein [Function unknow | 94.12 | |
| smart00091 | 67 | PAS PAS domain. PAS motifs appear in archaea, euba | 93.71 | |
| PRK10841 | 924 | hybrid sensory kinase in two-component regulatory | 93.53 | |
| TIGR02373 | 124 | photo_yellow photoactive yellow protein. Members o | 93.51 | |
| PRK11644 | 495 | sensory histidine kinase UhpB; Provisional | 93.39 | |
| KOG1229 | 775 | consensus 3'5'-cyclic nucleotide phosphodiesterase | 92.74 | |
| COG3283 | 511 | TyrR Transcriptional regulator of aromatic amino a | 92.46 | |
| KOG3753 | 1114 | consensus Circadian clock protein period [Signal t | 92.29 | |
| COG0642 | 336 | BaeS Signal transduction histidine kinase [Signal | 91.64 | |
| KOG0519 | 786 | consensus Sensory transduction histidine kinase [S | 90.91 | |
| PRK13837 | 828 | two-component VirA-like sensor kinase; Provisional | 90.77 | |
| smart00086 | 43 | PAC Motif C-terminal to PAS motifs (likely to cont | 90.18 | |
| COG1956 | 163 | GAF domain-containing protein [Signal transduction | 89.35 | |
| PRK10618 | 894 | phosphotransfer intermediate protein in two-compon | 88.54 | |
| KOG3560 | 712 | consensus Aryl-hydrocarbon receptor [Transcription | 88.14 | |
| KOG3559 | 598 | consensus Transcriptional regulator SIM1 [Transcri | 86.48 | |
| PRK10490 | 895 | sensor protein KdpD; Provisional | 86.2 | |
| COG3284 | 606 | AcoR Transcriptional activator of acetoin/glycerol | 86.14 | |
| KOG3561 | 803 | consensus Aryl-hydrocarbon receptor nuclear transl | 85.28 | |
| KOG3561 | 803 | consensus Aryl-hydrocarbon receptor nuclear transl | 85.16 | |
| COG3605 | 756 | PtsP Signal transduction protein containing GAF an | 84.96 | |
| PF07310 | 137 | PAS_5: PAS domain; InterPro: IPR009922 This family | 83.27 | |
| PF14689 | 62 | SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do | 82.95 | |
| COG3283 | 511 | TyrR Transcriptional regulator of aromatic amino a | 80.46 |
| >COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-125 Score=1036.44 Aligned_cols=510 Identities=33% Similarity=0.568 Sum_probs=450.5
Q ss_pred hHHHH-HhhccCCCCCCccceEEEEeCCCceEEEEecChhhhhCCCCcccccccccccCCccccccCCchHHHHHHHHhc
Q 002152 79 QITAY-LSKIQRGGLIQPFGCMLAVEEPTFRIIGYSENCLEMLDLRSRSEDFELNGLIGIDARTLFTPPSGASLAKAAAS 157 (959)
Q Consensus 79 ~~~~~-~~~i~~~g~iQp~G~ll~~~~~~~~i~~~S~N~~~~lg~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~ 157 (959)
.+|.| .+|||+||+||||||||++|+.++.|+|+|+||..+||+.| ++++|+++.++|+..+...++.++..
T Consensus 11 ~l~nce~ePIHipG~IQPHG~Llvl~~~~~~Vlq~S~N~~~~LG~~~-------e~l~~~tl~~vl~~~qv~~l~~~l~~ 83 (750)
T COG4251 11 TLTNCEREPIHIPGAIQPHGALLVLDEADLMVLQASENCANILGREP-------EDLLGRTLGAVLTSEQVPPLQSALTV 83 (750)
T ss_pred cccccccCCccCCCccCCceeEEEeecCCchhhhhhhhHHHHhCCCh-------hhhhcCCHHHhcchhhccHHHHhccc
Confidence 44555 66699999999999999999999999999999999999998 68999999999999999999999998
Q ss_pred ccccccCcceeeccCCCCCcceEEEEEeeCCEEEEEeccCCCCCCcchhhhHHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 002152 158 REISLLNPILVHSNSRSIEKPFYAILHRIDVGIVIDLEPSKSGDPALSLAGAVQSQKLAVSAISRLQALPGGDIGLLCDT 237 (959)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~E~Ep~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 237 (959)
+.....||..+.. + .+..||+++||+++.+|+||||....+.. ..+.++.++..++.+|++ +.++.++|+.
T Consensus 84 ~~~~~~np~~~w~--~-~~~~fDv~~HR~~~llIlEfEp~~t~e~~----~~l~f~h~~k~a~~~lq~--a~~l~~l~~~ 154 (750)
T COG4251 84 GGLTTLNPTKMWT--R-KGGSFDVSAHRSKELLILEFEPAGTGETA----SFLGFYHLAKLAMNRLQS--AANLRDLLSR 154 (750)
T ss_pred cCcccCCchhhhh--h-cCCceeEEEEecCcEEEEEEecCcccccc----cccchHHHHHHHHHHHhc--CccHHHHHHH
Confidence 8888888855433 1 23389999999999999999997554421 233567888889999999 5599999999
Q ss_pred HHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHHHHHhCCEEEEecCCCCCccccc--c
Q 002152 238 VVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFLFKQNRVRMICDCHAIPVMVIQ--S 315 (959)
Q Consensus 238 ~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~ly~~~~~r~i~d~~~~~~~l~~--~ 315 (959)
++++||++|||||||+|||++||+|+||||++.++++||||+||||||||+|||+||.+|++|+|+|++|+|||++| +
T Consensus 155 ~tqeVr~~tGfDRVMlYrF~~d~~G~VIAEak~e~LesyLGl~yPaSDIP~qAR~LY~~N~lRlIpD~~~~~vpv~PavN 234 (750)
T COG4251 155 TTQEVRRMTGFDRVMLYRFDEDGSGEVIAEAKREDLESYLGLRYPASDIPQQARALYIQNPLRLIPDVSYTPVPVLPAVN 234 (750)
T ss_pred HHHHHHHhcCCceEEEEeecCCCCccEEeccccccchhhhcccCCcccCCHHHHHHHhcCceeecccccCcccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 7
Q ss_pred cccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeecCCCCCCChhHHHHHHHHHHHHHHH
Q 002152 316 KELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQ 395 (959)
Q Consensus 316 ~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh~~pr~~~~~~r~~~~~l~~~~s~~ 395 (959)
|.+++|+|||+|.||||||||+|||+||||.||||||||++| +|||||+|||.+||++||+.|.+||+++|++|.+
T Consensus 235 p~t~~p~DLs~svLRSvSp~H~eYLrNMGV~ASmSISivv~g----~LWGLIACHH~sPk~ip~~vR~acef~gq~~s~~ 310 (750)
T COG4251 235 PETNEPLDLSYSVLRSVSPIHLEYLRNMGVGASMSISIVVDG----KLWGLIACHHQSPKVIPYEVRKACEFFGQVLSME 310 (750)
T ss_pred cccCCcccchHHHHhccChHHHHHHHhcCcceeeEEEEEECC----eeEEeeeeccCCCccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhhcccC-CcccccCCchhhhhccCCeEEEEECCeEEEecCCCCHHHHHHHHHHH
Q 002152 396 LYMELQVAMQLAEKNILRTQ-VLLCDMLLRDA-PFSIVTQSPSIMDLVKCDGAALYYGGRCWLVGVTPTESQLKDIAWWL 473 (959)
Q Consensus 396 l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~l~~l~~a~g~a~~~~~~~~~~G~~p~~~~~~~l~~wl 473 (959)
|+...+.+......+....+ +++..|...++ ..++....+++++|++|||+++|++|+|.++|.||+..++..|+.||
T Consensus 311 i~~~e~~~~~d~r~~l~~~~arl~~~ma~~~~~~d~L~~~~~dll~L~~adGaal~fg~~~~~vG~tP~~~~v~~Ll~wl 390 (750)
T COG4251 311 ISALEQSEDADYRVQLTEHHARLLRYMAHAADFVDGLIDHQDDLLDLMPADGAALCFGGRWHLVGETPPRPAVQRLLQWL 390 (750)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHhhhcchhhhhcCCchhhHhhccCCceEEEECCEEEEecCCCChHHHHHHHHHH
Confidence 98654322222211222222 34444544444 47889999999999999999999999999999999999999999999
Q ss_pred HhccCCCceeecccccccCCCCccccccccceEEEEEecC--CCeEEEeecccceEEeecCCCCCCCc-CCCCCcccCCc
Q 002152 474 LNNHGDCTGLSTDSLAEAGYPGAALLGQAVCGMATARITS--KDFLFWFRSHTAKEVKWGGAKHHPEH-KDNGGKMHPRS 550 (959)
Q Consensus 474 ~~~~~~~~~~~t~~l~~~~~p~~~~~~~~~~g~l~~~i~~--~~~l~~fR~e~~~~v~W~G~p~~~~~-~~~g~~l~PR~ 550 (959)
.+... ..+|+||+|+.. ||+++.|+.++|||||++|+. ++|++|||||++++|+|||+|+|++. .++|.||+||+
T Consensus 391 ~~~~~-~~vf~TdsL~q~-yPda~~~~~vAsGlLAI~is~~~s~~llWFRpEvv~tV~WGG~P~k~~e~~~~~~rL~PRk 468 (750)
T COG4251 391 AEREE-GDVFATDSLSQV-YPDAEDYASVASGLLAIPISRVKSNYLLWFRPEVVQTVNWGGDPEKPYEAGPMGIRLTPRK 468 (750)
T ss_pred hcCCc-ccEEeecccccc-CcchhhhccccceeEEEEeeccccceEEEEchHHheeeccCCCCCCccccCCCCcccCCcc
Confidence 88854 479999999985 999999999999999999997 89999999999999999999999976 55678999999
Q ss_pred hHHHHHHhhcccccCCccchHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccchHHHHHHH
Q 002152 551 SFKAFLEVVKNRSFPWEVSEINAIHSLQIVMRDSFQEMEEENDSKVQGNTQQNGSKMQGVDELSSVA 617 (959)
Q Consensus 551 SF~~w~e~V~~~s~pW~~~el~aa~~L~~iL~~~l~~i~~~~~~~~~~~~~l~~~l~~~~~eL~~~~ 617 (959)
||+.|+|+|+++|.||+..|++++.+++..+ ..+.. +++.+..+++.++.++++||++..
T Consensus 469 SFe~WkE~vRl~s~PWs~~ei~~A~~LR~ai----v~ivl---~~aeela~l~r~lersn~el~~f~ 528 (750)
T COG4251 469 SFELWKETVRLQSQPWSEVEIEAALELRKAI----VGIVL---RHAEELAQLRRELERSNAELRAFA 528 (750)
T ss_pred cHHHHHHHHhccCCCCCHHHHHHHHHHHHHH----HHHHH---HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999999999999999999995543 33333 455567888888888888887765
|
|
| >PF00360 PHY: Phytochrome region; InterPro: IPR013515 Phytochrome belongs to a family of plant photoreceptors that mediate physiological and developmental responses to changes in red and far-red light conditions [] | Back alignment and domain information |
|---|
| >PRK13560 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL | Back alignment and domain information |
|---|
| >PF08446 PAS_2: PAS fold; InterPro: IPR013654 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [] | Back alignment and domain information |
|---|
| >PRK09776 putative diguanylate cyclase; Provisional | Back alignment and domain information |
|---|
| >PRK11091 aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
| >PRK09776 putative diguanylate cyclase; Provisional | Back alignment and domain information |
|---|
| >PRK13560 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02040 PpsR-CrtJ transcriptional regulator PpsR | Back alignment and domain information |
|---|
| >PRK11359 cyclic-di-GMP phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >TIGR02040 PpsR-CrtJ transcriptional regulator PpsR | Back alignment and domain information |
|---|
| >PRK13559 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK13557 histidine kinase; Provisional | Back alignment and domain information |
|---|
| >PRK11006 phoR phosphate regulon sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK11360 sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
| >PRK11073 glnL nitrogen regulation protein NR(II); Provisional | Back alignment and domain information |
|---|
| >TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR | Back alignment and domain information |
|---|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
| >PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A | Back alignment and domain information |
|---|
| >PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [] | Back alignment and domain information |
|---|
| >PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases | Back alignment and domain information |
|---|
| >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
| >PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A | Back alignment and domain information |
|---|
| >PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain [] | Back alignment and domain information |
|---|
| >PRK11091 aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
| >PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain [] | Back alignment and domain information |
|---|
| >PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional | Back alignment and domain information |
|---|
| >PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [] | Back alignment and domain information |
|---|
| >PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] | Back alignment and domain information |
|---|
| >PRK11086 sensory histidine kinase DcuS; Provisional | Back alignment and domain information |
|---|
| >COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases | Back alignment and domain information |
|---|
| >PRK10060 RNase II stability modulator; Provisional | Back alignment and domain information |
|---|
| >PRK13559 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK13558 bacterio-opsin activator; Provisional | Back alignment and domain information |
|---|
| >COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK13557 histidine kinase; Provisional | Back alignment and domain information |
|---|
| >TIGR00229 sensory_box PAS domain S-box | Back alignment and domain information |
|---|
| >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10060 RNase II stability modulator; Provisional | Back alignment and domain information |
|---|
| >PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [] | Back alignment and domain information |
|---|
| >PRK11359 cyclic-di-GMP phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >PRK13558 bacterio-opsin activator; Provisional | Back alignment and domain information |
|---|
| >PRK15053 dpiB sensor histidine kinase DpiB; Provisional | Back alignment and domain information |
|---|
| >TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL | Back alignment and domain information |
|---|
| >TIGR00229 sensory_box PAS domain S-box | Back alignment and domain information |
|---|
| >PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs [] | Back alignment and domain information |
|---|
| >COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D | Back alignment and domain information |
|---|
| >KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription] | Back alignment and domain information |
|---|
| >COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A | Back alignment and domain information |
|---|
| >PRK11360 sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
| >PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A | Back alignment and domain information |
|---|
| >cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya | Back alignment and domain information |
|---|
| >TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR | Back alignment and domain information |
|---|
| >PF12860 PAS_7: PAS fold | Back alignment and domain information |
|---|
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
| >cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya | Back alignment and domain information |
|---|
| >COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
| >COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D | Back alignment and domain information |
|---|
| >PRK11073 glnL nitrogen regulation protein NR(II); Provisional | Back alignment and domain information |
|---|
| >PRK15347 two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
| >COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >smart00388 HisKA His Kinase A (phosphoacceptor) domain | Back alignment and domain information |
|---|
| >PRK11107 hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
| >PRK11006 phoR phosphate regulon sensor protein; Provisional | Back alignment and domain information |
|---|
| >PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A | Back alignment and domain information |
|---|
| >COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional | Back alignment and domain information |
|---|
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
| >PRK11466 hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
| >PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A | Back alignment and domain information |
|---|
| >PF12860 PAS_7: PAS fold | Back alignment and domain information |
|---|
| >PRK11086 sensory histidine kinase DcuS; Provisional | Back alignment and domain information |
|---|
| >PRK09303 adaptive-response sensory kinase; Validated | Back alignment and domain information |
|---|
| >KOG3559 consensus Transcriptional regulator SIM1 [Transcription] | Back alignment and domain information |
|---|
| >COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase | Back alignment and domain information |
|---|
| >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10490 sensor protein KdpD; Provisional | Back alignment and domain information |
|---|
| >KOG3560 consensus Aryl-hydrocarbon receptor [Transcription] | Back alignment and domain information |
|---|
| >PRK15053 dpiB sensor histidine kinase DpiB; Provisional | Back alignment and domain information |
|---|
| >PRK13837 two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
| >PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A | Back alignment and domain information |
|---|
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
| >KOG1229 consensus 3'5'-cyclic nucleotide phosphodiesterases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10604 sensor protein RstB; Provisional | Back alignment and domain information |
|---|
| >PRK10815 sensor protein PhoQ; Provisional | Back alignment and domain information |
|---|
| >PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A | Back alignment and domain information |
|---|
| >PRK10364 sensor protein ZraS; Provisional | Back alignment and domain information |
|---|
| >COG2461 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >smart00091 PAS PAS domain | Back alignment and domain information |
|---|
| >PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins | Back alignment and domain information |
|---|
| >TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase | Back alignment and domain information |
|---|
| >TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase | Back alignment and domain information |
|---|
| >KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription] | Back alignment and domain information |
|---|
| >PRK10337 sensor protein QseC; Provisional | Back alignment and domain information |
|---|
| >COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase | Back alignment and domain information |
|---|
| >PRK10549 signal transduction histidine-protein kinase BaeS; Provisional | Back alignment and domain information |
|---|
| >PRK09467 envZ osmolarity sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK09835 sensor kinase CusS; Provisional | Back alignment and domain information |
|---|
| >PRK11100 sensory histidine kinase CreC; Provisional | Back alignment and domain information |
|---|
| >TIGR01386 cztS_silS_copS heavy metal sensor kinase | Back alignment and domain information |
|---|
| >TIGR02373 photo_yellow photoactive yellow protein | Back alignment and domain information |
|---|
| >PRK10755 sensor protein BasS/PmrB; Provisional | Back alignment and domain information |
|---|
| >COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09470 cpxA two-component sensor protein; Provisional | Back alignment and domain information |
|---|
| >smart00086 PAC Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) | Back alignment and domain information |
|---|
| >PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins | Back alignment and domain information |
|---|
| >TIGR02851 spore_V_T stage V sporulation protein T | Back alignment and domain information |
|---|
| >COG2461 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >smart00091 PAS PAS domain | Back alignment and domain information |
|---|
| >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
| >TIGR02373 photo_yellow photoactive yellow protein | Back alignment and domain information |
|---|
| >PRK11644 sensory histidine kinase UhpB; Provisional | Back alignment and domain information |
|---|
| >KOG1229 consensus 3'5'-cyclic nucleotide phosphodiesterases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3753 consensus Circadian clock protein period [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK13837 two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
| >smart00086 PAC Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) | Back alignment and domain information |
|---|
| >COG1956 GAF domain-containing protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional | Back alignment and domain information |
|---|
| >KOG3560 consensus Aryl-hydrocarbon receptor [Transcription] | Back alignment and domain information |
|---|
| >KOG3559 consensus Transcriptional regulator SIM1 [Transcription] | Back alignment and domain information |
|---|
| >PRK10490 sensor protein KdpD; Provisional | Back alignment and domain information |
|---|
| >COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] | Back alignment and domain information |
|---|
| >KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] | Back alignment and domain information |
|---|
| >KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] | Back alignment and domain information |
|---|
| >COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF07310 PAS_5: PAS domain; InterPro: IPR009922 This family contains a number of hypothetical bacterial proteins of unknown function approximately 200 residues long | Back alignment and domain information |
|---|
| >PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B | Back alignment and domain information |
|---|
| >COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 959 | ||||
| 2vea_A | 520 | The Complete Sensory Module Of The Cyanobacterial P | 3e-66 | ||
| 3zq5_A | 520 | Structure Of The Y263f Mutant Of The Cyanobacterial | 1e-65 | ||
| 4gw9_A | 655 | Structure Of A Bacteriophytochrome And Light-Stimul | 7e-55 | ||
| 3g6o_A | 505 | Crystal Structure Of P. Aeruginosa Bacteriophytochr | 2e-44 | ||
| 3c2w_A | 505 | Crystal Structure Of The Photosensory Core Domain O | 7e-44 | ||
| 3ibr_A | 505 | Crystal Structure Of P. Aeruginosa Bacteriophytochr | 4e-42 | ||
| 4e04_A | 327 | Rpbphp2 Chromophore-binding Domain Crystallized By | 4e-37 | ||
| 2ool_A | 337 | Crystal Structure Of The Chromophore-Binding Domain | 2e-36 | ||
| 2o9b_A | 342 | Crystal Structure Of Bacteriophytochrome Chromophor | 1e-27 | ||
| 3s7n_A | 343 | Crystal Structure Of The Alternate His 207 Conforma | 8e-27 | ||
| 1ztu_A | 341 | Structure Of The Chromophore Binding Domain Of Bact | 2e-26 | ||
| 3s7q_A | 343 | Crystal Structure Of A Monomeric Infrared Fluoresce | 2e-26 | ||
| 2k2n_A | 172 | Solution Structure Of A Cyanobacterial Phytochrome | 1e-19 | ||
| 2lb5_A | 208 | Refined Structural Basis For The Photoconversion Of | 1e-19 |
| >pdb|2VEA|A Chain A, The Complete Sensory Module Of The Cyanobacterial Phytochrome Cph1 In The Pr-State Length = 520 | Back alignment and structure |
|
| >pdb|3ZQ5|A Chain A, Structure Of The Y263f Mutant Of The Cyanobacterial Phytochrome Cph1 Length = 520 | Back alignment and structure |
| >pdb|4GW9|A Chain A, Structure Of A Bacteriophytochrome And Light-Stimulated Protomer Swapping With A Gene Repressor Length = 655 | Back alignment and structure |
| >pdb|3G6O|A Chain A, Crystal Structure Of P. Aeruginosa Bacteriophytochrome Pabphp Photosensory Core Domain Mutant Q188l Length = 505 | Back alignment and structure |
| >pdb|3C2W|A Chain A, Crystal Structure Of The Photosensory Core Domain Of P. Aeruginosa Bacteriophytochrome Pabphp In The Pfr State Length = 505 | Back alignment and structure |
| >pdb|3IBR|A Chain A, Crystal Structure Of P. Aeruginosa Bacteriophytochrome Photosensory Core Module Mutant Q188l In The Mixed PrPFR STATE Length = 505 | Back alignment and structure |
| >pdb|4E04|A Chain A, Rpbphp2 Chromophore-binding Domain Crystallized By Homologue-directed Mutagenesis. Length = 327 | Back alignment and structure |
| >pdb|2OOL|A Chain A, Crystal Structure Of The Chromophore-Binding Domain Of An Unusual Bacteriophytochrome Rpbphp3 From R. Palustris Length = 337 | Back alignment and structure |
| >pdb|2O9B|A Chain A, Crystal Structure Of Bacteriophytochrome Chromophore Binding Domain Length = 342 | Back alignment and structure |
| >pdb|3S7N|A Chain A, Crystal Structure Of The Alternate His 207 Conformation Of The Infrared Fluorescent D207h Variant Of Deinococcus Bacteriophytochrome Chromophore Binding Domain At 2.45 Angstrom Resolution Length = 343 | Back alignment and structure |
| >pdb|1ZTU|A Chain A, Structure Of The Chromophore Binding Domain Of Bacterial Phytochrome Length = 341 | Back alignment and structure |
| >pdb|3S7Q|A Chain A, Crystal Structure Of A Monomeric Infrared Fluorescent Deinococcus Radiodurans Bacteriophytochrome Chromophore Binding Domain Length = 343 | Back alignment and structure |
| >pdb|2K2N|A Chain A, Solution Structure Of A Cyanobacterial Phytochrome Gaf Domain In The Red Light-Absorbing Ground State Length = 172 | Back alignment and structure |
| >pdb|2LB5|A Chain A, Refined Structural Basis For The Photoconversion Of A Phytochrome To The Activated Far-Red Light-Absorbing Form Length = 208 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A* Length = 520 | Back alignment and structure |
|---|
| >3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3g6o_A* 3ibr_A* Length = 505 | Back alignment and structure |
|---|
| >2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9 Length = 337 | Back alignment and structure |
|---|
| >4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris} Length = 327 | Back alignment and structure |
|---|
| >3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A* Length = 343 | Back alignment and structure |
|---|
| >2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A* Length = 172 | Back alignment and structure |
|---|
| >3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus} Length = 227 | Back alignment and structure |
|---|
| >3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus} Length = 227 | Back alignment and structure |
|---|
| >3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens} Length = 114 | Back alignment and structure |
|---|
| >3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui} Length = 125 | Back alignment and structure |
|---|
| >3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor} Length = 152 | Back alignment and structure |
|---|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Length = 349 | Back alignment and structure |
|---|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Length = 349 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca} Length = 117 | Back alignment and structure |
|---|
| >3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A* Length = 96 | Back alignment and structure |
|---|
| >3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis} Length = 129 | Back alignment and structure |
|---|
| >3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049} Length = 126 | Back alignment and structure |
|---|
| >2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis} Length = 111 | Back alignment and structure |
|---|
| >3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense} Length = 126 | Back alignment and structure |
|---|
| >3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A Length = 120 | Back alignment and structure |
|---|
| >3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Length = 165 | Back alignment and structure |
|---|
| >1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Length = 398 | Back alignment and structure |
|---|
| >3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea} Length = 124 | Back alignment and structure |
|---|
| >3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea} Length = 124 | Back alignment and structure |
|---|
| >1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1 Length = 129 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 959 | |||
| 4eho_A | 635 | Bacteriophytochrome, PAS/PAC sensor; photoreceptor | 100.0 | |
| 3zq5_A | 520 | Phytochrome-like protein CPH1; arginine finger, ta | 100.0 | |
| 3nhq_A | 505 | Bacteriophytochrome; photoreceptor, PAS, signaling | 100.0 | |
| 4e04_A | 327 | Bacteriophytochrome (light-regulated signal trans | 100.0 | |
| 3s7o_A | 343 | Bacteriophytochrome; biliverdin, PAS, GAF, photore | 100.0 | |
| 2ool_A | 337 | Sensor protein; bacteriophytochrome, photoconversi | 100.0 | |
| 4glq_A | 171 | Methyl-accepting chemotaxis protein; chromophore, | 100.0 | |
| 2k2n_A | 172 | Sensor protein, SYB-CPH1(GAF); phytochrome, GAF do | 99.96 | |
| 2lb5_A | 208 | Sensor histidine kinase; PCB, transferase, GAF dom | 99.95 | |
| 3ewk_A | 227 | Sensor protein; PAS domain, alpha/beta fold, kinas | 99.94 | |
| 4f3l_A | 361 | Mclock, circadian locomoter output cycles protein | 99.79 | |
| 4f3l_B | 387 | BMAL1B; BHLH, PAS, circadian rhythm proteins, tran | 99.77 | |
| 3mr0_A | 142 | Sensory box histidine kinase/response regulator; P | 99.71 | |
| 3a0r_A | 349 | Sensor protein; four helix bundle, PAS fold, kinas | 99.65 | |
| 3mr0_A | 142 | Sensory box histidine kinase/response regulator; P | 99.64 | |
| 3p7n_A | 258 | Sensor histidine kinase; LOV domain, light-activat | 99.63 | |
| 3rty_A | 339 | Period circadian protein; PAS domain, signalling, | 99.61 | |
| 2pr5_A | 132 | Blue-light photoreceptor; light-oxygen-voltage, LO | 99.59 | |
| 2gj3_A | 120 | Nitrogen fixation regulatory protein; PAS domain, | 99.57 | |
| 2gj3_A | 120 | Nitrogen fixation regulatory protein; PAS domain, | 99.57 | |
| 3f1p_B | 121 | ARYL hydrocarbon receptor nuclear translocator; PA | 99.56 | |
| 4hia_A | 176 | LOV protein; PAS, HTH, signaling protein; HET: FMN | 99.56 | |
| 3p7n_A | 258 | Sensor histidine kinase; LOV domain, light-activat | 99.55 | |
| 3f1p_B | 121 | ARYL hydrocarbon receptor nuclear translocator; PA | 99.54 | |
| 3ue6_A | 166 | Aureochrome1; PAS/LOV domain, FMN-binding blue-lig | 99.54 | |
| 3k3c_A | 158 | Protein RV1364C/MT1410; sensor, PAS, signal transd | 99.53 | |
| 3nja_A | 125 | Probable ggdef family protein; structural genomics | 99.52 | |
| 3f1p_A | 117 | Endothelial PAS domain-containing protein 1; PAS d | 99.52 | |
| 3nja_A | 125 | Probable ggdef family protein; structural genomics | 99.51 | |
| 4dj3_A | 317 | Period circadian protein homolog 3; PAS domain, ci | 99.51 | |
| 2pr5_A | 132 | Blue-light photoreceptor; light-oxygen-voltage, LO | 99.51 | |
| 3ue6_A | 166 | Aureochrome1; PAS/LOV domain, FMN-binding blue-lig | 99.5 | |
| 4hia_A | 176 | LOV protein; PAS, HTH, signaling protein; HET: FMN | 99.5 | |
| 3t50_A | 128 | Blue-light-activated histidine kinase; PAS superfa | 99.5 | |
| 4dj2_A | 320 | Period circadian protein homolog 1; PAS domains, c | 99.48 | |
| 3kx0_X | 185 | Uncharacterized protein RV1364C/MT1410; PAS domain | 99.47 | |
| 3h9w_A | 115 | Diguanylate cyclase with PAS/PAC sensor; alpha-bet | 99.47 | |
| 3f1p_A | 117 | Endothelial PAS domain-containing protein 1; PAS d | 99.47 | |
| 1d06_A | 130 | Nitrogen fixation regulatory protein FIXL; oxygen | 99.47 | |
| 3bwl_A | 126 | Sensor protein; structural genomics, APC87707.1, P | 99.44 | |
| 3h9w_A | 115 | Diguanylate cyclase with PAS/PAC sensor; alpha-bet | 99.44 | |
| 3sw1_A | 162 | Sensory box protein; light-oxygen-voltage, LOV, PA | 99.44 | |
| 3gdi_A | 309 | Period circadian protein homolog 2; tandem PAS dom | 99.44 | |
| 1d06_A | 130 | Nitrogen fixation regulatory protein FIXL; oxygen | 99.42 | |
| 3mxq_A | 152 | Sensor protein; PSI2, MCSG, structural genomics, p | 99.41 | |
| 3icy_A | 118 | Sensor protein; sensory box histidine kinase/respo | 99.41 | |
| 1n9l_A | 109 | PHOT-LOV1, putative blue light receptor; phototrop | 99.4 | |
| 3t50_A | 128 | Blue-light-activated histidine kinase; PAS superfa | 99.4 | |
| 3luq_A | 114 | Sensor protein; PAS, histidine, kinase, PSI, MCSG, | 99.4 | |
| 2v0u_A | 146 | NPH1-1, LOV2; kinase, transferase, ATP-binding, se | 99.39 | |
| 2vv6_A | 119 | FIXL, sensor protein FIXL; signaling protein, tran | 99.39 | |
| 3lyx_A | 124 | Sensory BOX/ggdef domain protein; structural genom | 99.39 | |
| 4eet_B | 115 | Phototropin-2; LOV, blue light photoreceptor, sign | 99.38 | |
| 2z6d_A | 130 | Phototropin-2; PAS-fold, LOV-fold, alternative spl | 99.37 | |
| 3mqq_A | 120 | Transcriptional regulator, LUXR family; PAS domain | 99.37 | |
| 2r78_A | 117 | Sensor protein; sensory box sensor histidine kinas | 99.37 | |
| 3eeh_A | 125 | Putative light and redox sensing histidine kinase; | 99.36 | |
| 3lyx_A | 124 | Sensory BOX/ggdef domain protein; structural genom | 99.36 | |
| 4eet_B | 115 | Phototropin-2; LOV, blue light photoreceptor, sign | 99.36 | |
| 3k3c_A | 158 | Protein RV1364C/MT1410; sensor, PAS, signal transd | 99.35 | |
| 3eeh_A | 125 | Putative light and redox sensing histidine kinase; | 99.35 | |
| 2v0u_A | 146 | NPH1-1, LOV2; kinase, transferase, ATP-binding, se | 99.35 | |
| 3icy_A | 118 | Sensor protein; sensory box histidine kinase/respo | 99.35 | |
| 3ewk_A | 227 | Sensor protein; PAS domain, alpha/beta fold, kinas | 99.35 | |
| 1n9l_A | 109 | PHOT-LOV1, putative blue light receptor; phototrop | 99.35 | |
| 3mqq_A | 120 | Transcriptional regulator, LUXR family; PAS domain | 99.34 | |
| 3sw1_A | 162 | Sensory box protein; light-oxygen-voltage, LOV, PA | 99.34 | |
| 2vv6_A | 119 | FIXL, sensor protein FIXL; signaling protein, tran | 99.34 | |
| 2z6d_A | 130 | Phototropin-2; PAS-fold, LOV-fold, alternative spl | 99.34 | |
| 2r78_A | 117 | Sensor protein; sensory box sensor histidine kinas | 99.32 | |
| 3luq_A | 114 | Sensor protein; PAS, histidine, kinase, PSI, MCSG, | 99.32 | |
| 1v9y_A | 167 | Heme PAS sensor protein; signaling protein; HET: H | 99.32 | |
| 3mxq_A | 152 | Sensor protein; PSI2, MCSG, structural genomics, p | 99.31 | |
| 3p01_A | 184 | Two-component response regulator; PSI-2, midwest c | 99.3 | |
| 1v9y_A | 167 | Heme PAS sensor protein; signaling protein; HET: H | 99.28 | |
| 3mjq_A | 126 | Uncharacterized protein; NESG, structural genomics | 99.27 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.27 | |
| 3bwl_A | 126 | Sensor protein; structural genomics, APC87707.1, P | 99.27 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.27 | |
| 2kdk_A | 121 | ARYL hydrocarbon receptor nuclear translocator-LI | 99.25 | |
| 2kdk_A | 121 | ARYL hydrocarbon receptor nuclear translocator-LI | 99.25 | |
| 3kx0_X | 185 | Uncharacterized protein RV1364C/MT1410; PAS domain | 99.2 | |
| 3vol_A | 233 | Aerotaxis transducer AER2; heme, oxygen sensor pro | 99.18 | |
| 2zmf_A | 189 | CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho | 99.18 | |
| 3olo_A | 118 | Two-component sensor histidine kinase; structural | 99.18 | |
| 3mjq_A | 126 | Uncharacterized protein; NESG, structural genomics | 99.17 | |
| 4eho_A | 635 | Bacteriophytochrome, PAS/PAC sensor; photoreceptor | 99.17 | |
| 3vol_A | 233 | Aerotaxis transducer AER2; heme, oxygen sensor pro | 99.16 | |
| 3olo_A | 118 | Two-component sensor histidine kinase; structural | 99.1 | |
| 1byw_A | 110 | Protein (human ERG potassium channel); PAS domain, | 99.09 | |
| 2l0w_A | 138 | Potassium voltage-gated channel, subfamily H (EAG | 99.09 | |
| 3oov_A | 169 | Methyl-accepting chemotaxis protein, putative; str | 99.08 | |
| 2l0w_A | 138 | Potassium voltage-gated channel, subfamily H (EAG | 99.07 | |
| 3fc7_A | 125 | HTR-like protein, sensor protein; APC87712.1, HTR- | 99.07 | |
| 3k2n_A | 177 | Sigma-54-dependent transcriptional regulator; PSI- | 99.06 | |
| 3trc_A | 171 | Phosphoenolpyruvate-protein phosphotransferase; si | 99.06 | |
| 2qkp_A | 151 | Uncharacterized protein; structural genomics, unkn | 99.03 | |
| 3ci6_A | 171 | Phosphoenolpyruvate-protein phosphotransferase; PE | 99.03 | |
| 1byw_A | 110 | Protein (human ERG potassium channel); PAS domain, | 99.03 | |
| 3e0y_A | 181 | Conserved domain protein; APC87688.2, geobacter su | 99.03 | |
| 2qyb_A | 181 | Membrane protein, putative; GAF domain, domain of | 99.01 | |
| 3mfx_A | 129 | Sensory BOX/ggdef family protein; alpha-beta prote | 98.99 | |
| 1ykd_A | 398 | Adenylate cyclase; GAF domain, bound cyclic AMP li | 98.98 | |
| 4hi4_A | 121 | Aerotaxis transducer AER2; PAS domain, diatomic GA | 98.98 | |
| 2vlg_A | 111 | Sporulation kinase A; histidine kinase, two-compon | 98.98 | |
| 2e4s_A | 189 | CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod | 98.97 | |
| 4f3l_A | 361 | Mclock, circadian locomoter output cycles protein | 98.97 | |
| 3d72_A | 149 | Vivid PAS protein VVD; circadian, photoreceptor, b | 98.97 | |
| 4f3l_B | 387 | BMAL1B; BHLH, PAS, circadian rhythm proteins, tran | 98.97 | |
| 3fg8_A | 118 | Uncharacterized protein RHA05790; PAS domain, stru | 98.96 | |
| 2vlg_A | 111 | Sporulation kinase A; histidine kinase, two-compon | 98.95 | |
| 3d72_A | 149 | Vivid PAS protein VVD; circadian, photoreceptor, b | 98.94 | |
| 3ibj_A | 691 | CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE | 98.93 | |
| 3hcy_A | 151 | Putative two-component sensor histidine kinase PR; | 98.91 | |
| 3mfx_A | 129 | Sensory BOX/ggdef family protein; alpha-beta prote | 98.9 | |
| 3fc7_A | 125 | HTR-like protein, sensor protein; APC87712.1, HTR- | 98.88 | |
| 4hi4_A | 121 | Aerotaxis transducer AER2; PAS domain, diatomic GA | 98.85 | |
| 1mc0_A | 368 | 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF | 98.85 | |
| 3b33_A | 115 | Sensor protein; structural genomics, PAS domain, n | 98.84 | |
| 2qkp_A | 151 | Uncharacterized protein; structural genomics, unkn | 98.83 | |
| 2ykf_A | 305 | Pdtas, probable sensor histidine kinase pdtas; tra | 98.29 | |
| 3o5y_A | 165 | Sensor protein; GAF domain, histidine, kinase, PSI | 98.78 | |
| 3fg8_A | 118 | Uncharacterized protein RHA05790; PAS domain, stru | 98.77 | |
| 2w0n_A | 118 | Sensor protein DCUS; signal transduction, two-comp | 98.75 | |
| 3a0r_A | 349 | Sensor protein; four helix bundle, PAS fold, kinas | 98.7 | |
| 1ll8_A | 114 | PAS kinase; PAS domain, ligand binding, ligand scr | 98.7 | |
| 1ll8_A | 114 | PAS kinase; PAS domain, ligand binding, ligand scr | 98.69 | |
| 3cax_A | 369 | Uncharacterized protein PF0695; structural genomic | 98.69 | |
| 1mc0_A | 368 | 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF | 98.67 | |
| 3b33_A | 115 | Sensor protein; structural genomics, PAS domain, n | 98.64 | |
| 2vjw_A | 149 | GAF-B, GAF family protein; histidine kinase, hypox | 98.6 | |
| 4dj3_A | 317 | Period circadian protein homolog 3; PAS domain, ci | 98.59 | |
| 2w3g_A | 153 | DOSS, two component sensor histidine kinase DEVS ( | 98.54 | |
| 2w0n_A | 118 | Sensor protein DCUS; signal transduction, two-comp | 98.54 | |
| 1ykd_A | 398 | Adenylate cyclase; GAF domain, bound cyclic AMP li | 98.53 | |
| 2jhe_A | 190 | Transcription regulator TYRR; aromatic hydrocarbon | 98.52 | |
| 3a0s_A | 96 | Sensor protein; PAS-fold, kinase, phosphoprotein, | 98.5 | |
| 4fpp_A | 247 | Phosphotransferase; four helix bundle, bergerat fo | 98.48 | |
| 2c2a_A | 258 | Sensor histidine kinase; phosphotransfer, PHOQ, se | 98.45 | |
| 3rty_A | 339 | Period circadian protein; PAS domain, signalling, | 98.44 | |
| 3cax_A | 369 | Uncharacterized protein PF0695; structural genomic | 98.42 | |
| 1nwz_A | 125 | PYP, photoactive yellow protein; PAS, LOV, GAF, do | 98.42 | |
| 1mzu_A | 129 | PPR; photoactive yellow protein, PAS, PYP, signali | 98.39 | |
| 3ibj_A | 691 | CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE | 98.38 | |
| 3dba_A | 180 | CONE CGMP-specific 3',5'-cyclic phosphodiesterase | 98.35 | |
| 3a0s_A | 96 | Sensor protein; PAS-fold, kinase, phosphoprotein, | 98.32 | |
| 1nwz_A | 125 | PYP, photoactive yellow protein; PAS, LOV, GAF, do | 98.3 | |
| 3mmh_A | 167 | FRMSR, methionine-R-sulfoxide reductase; oxidoredu | 98.29 | |
| 1mzu_A | 129 | PPR; photoactive yellow protein, PAS, PYP, signali | 98.28 | |
| 2ykf_A | 305 | Pdtas, probable sensor histidine kinase pdtas; tra | 97.57 | |
| 2jhe_A | 190 | Transcription regulator TYRR; aromatic hydrocarbon | 98.24 | |
| 4dj2_A | 320 | Period circadian protein homolog 1; PAS domains, c | 98.23 | |
| 3gdi_A | 309 | Period circadian protein homolog 2; tandem PAS dom | 98.22 | |
| 3bjc_A | 878 | CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 | 98.2 | |
| 4ew8_A | 268 | Sensor protein DIVL; signal transduction, two-comp | 97.98 | |
| 1vhm_A | 195 | Protein YEBR; structural genomics, unknown functio | 97.87 | |
| 3ksh_A | 160 | Putative uncharacterized protein; FRMSR, free-Met- | 97.77 | |
| 1f5m_A | 180 | GAF; CGMP binding, signaling protein; 1.90A {Sacch | 97.74 | |
| 3rfb_A | 171 | Putative uncharacterized protein; FRMSR, GAF, oxid | 97.56 | |
| 3d36_A | 244 | Sporulation kinase B; GHKL ATPase, four helix bund | 97.53 | |
| 1gkz_A | 388 | [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] | 97.48 | |
| 3zcc_A | 114 | HAMP, osmolarity sensor protein ENVZ; signaling pr | 97.35 | |
| 3jz3_A | 222 | Sensor protein QSEC; helix-turn-helix, kinase doma | 97.2 | |
| 3cit_A | 160 | Sensor histidine kinase; MEGA: 3.30.450.40, struct | 97.04 | |
| 3bjc_A | 878 | CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 | 97.04 | |
| 2btz_A | 394 | Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo | 96.54 | |
| 1oj5_A | 132 | Steroid receptor coactivator 1A; transcriptional c | 96.5 | |
| 3zrx_A | 115 | AF1503 protein, osmolarity sensor protein ENVZ; si | 96.33 | |
| 1oj5_A | 132 | Steroid receptor coactivator 1A; transcriptional c | 96.25 | |
| 2e0a_A | 394 | Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP | 96.21 | |
| 2q8g_A | 407 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 95.76 | |
| 1y8o_A | 419 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 93.8 | |
| 3eea_A | 162 | GAF domain/HD domain protein; structural genomics, | 93.0 | |
| 3ehh_A | 218 | Sensor kinase (YOCF protein); four-helix bundle, G | 91.6 | |
| 3szt_A | 237 | QCSR, quorum-sensing control repressor; quorum sen | 87.32 | |
| 2ool_A | 337 | Sensor protein; bacteriophytochrome, photoconversi | 86.89 | |
| 4dah_A | 217 | Sporulation kinase D; alpha-beta-alpha structure, | 85.45 | |
| 1b3q_A | 379 | Protein (chemotaxis protein CHEA); histine kinase, | 84.07 | |
| 2w1r_A | 123 | Spovt, stage V sporulation protein T; regulatory G | 80.09 |
| >3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A* | Back alignment and structure |
|---|
| >3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A* | Back alignment and structure |
|---|
| >4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
| >3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A* | Back alignment and structure |
|---|
| >2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9 | Back alignment and structure |
|---|
| >4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A* | Back alignment and structure |
|---|
| >2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A* | Back alignment and structure |
|---|
| >2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A* | Back alignment and structure |
|---|
| >3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus} | Back alignment and structure |
|---|
| >4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} | Back alignment and structure |
|---|
| >4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} | Back alignment and structure |
|---|
| >3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis} | Back alignment and structure |
|---|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis} | Back alignment and structure |
|---|
| >3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis} | Back alignment and structure |
|---|
| >3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A | Back alignment and structure |
|---|
| >2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A* | Back alignment and structure |
|---|
| >2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii} | Back alignment and structure |
|---|
| >2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii} | Back alignment and structure |
|---|
| >3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B | Back alignment and structure |
|---|
| >4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A* | Back alignment and structure |
|---|
| >3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis} | Back alignment and structure |
|---|
| >3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B | Back alignment and structure |
|---|
| >3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A* | Back alignment and structure |
|---|
| >3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A | Back alignment and structure |
|---|
| >3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum} | Back alignment and structure |
|---|
| >3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A | Back alignment and structure |
|---|
| >3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum} | Back alignment and structure |
|---|
| >4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus} | Back alignment and structure |
|---|
| >2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A* | Back alignment and structure |
|---|
| >3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A* | Back alignment and structure |
|---|
| >4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A* | Back alignment and structure |
|---|
| >3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis} | Back alignment and structure |
|---|
| >4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus} | Back alignment and structure |
|---|
| >3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei} | Back alignment and structure |
|---|
| >3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A | Back alignment and structure |
|---|
| >1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A* | Back alignment and structure |
|---|
| >3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049} | Back alignment and structure |
|---|
| >3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei} | Back alignment and structure |
|---|
| >3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida} | Back alignment and structure |
|---|
| >3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus} | Back alignment and structure |
|---|
| >1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A* | Back alignment and structure |
|---|
| >3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
| >3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
| >1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A* | Back alignment and structure |
|---|
| >3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis} | Back alignment and structure |
|---|
| >3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
| >2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A* | Back alignment and structure |
|---|
| >2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A* | Back alignment and structure |
|---|
| >3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
| >4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A* | Back alignment and structure |
|---|
| >2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A* | Back alignment and structure |
|---|
| >3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A | Back alignment and structure |
|---|
| >2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
| >3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui} | Back alignment and structure |
|---|
| >3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
| >4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A* | Back alignment and structure |
|---|
| >3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A | Back alignment and structure |
|---|
| >3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui} | Back alignment and structure |
|---|
| >2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A* | Back alignment and structure |
|---|
| >3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
| >3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus} | Back alignment and structure |
|---|
| >1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A* | Back alignment and structure |
|---|
| >3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A | Back alignment and structure |
|---|
| >3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida} | Back alignment and structure |
|---|
| >2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A* | Back alignment and structure |
|---|
| >2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A* | Back alignment and structure |
|---|
| >2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
| >3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
| >1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L* | Back alignment and structure |
|---|
| >3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
| >3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} | Back alignment and structure |
|---|
| >1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L* | Back alignment and structure |
|---|
| >3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense} | Back alignment and structure |
|---|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
| >3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049} | Back alignment and structure |
|---|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
| >2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP} | Back alignment and structure |
|---|
| >3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense} | Back alignment and structure |
|---|
| >3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP} | Back alignment and structure |
|---|
| >1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6 | Back alignment and structure |
|---|
| >2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A | Back alignment and structure |
|---|
| >3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
| >2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A | Back alignment and structure |
|---|
| >3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui} | Back alignment and structure |
|---|
| >3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
| >3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} | Back alignment and structure |
|---|
| >2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans} | Back alignment and structure |
|---|
| >3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} | Back alignment and structure |
|---|
| >1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6 | Back alignment and structure |
|---|
| >3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
| >2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
| >3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis} | Back alignment and structure |
|---|
| >1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} | Back alignment and structure |
|---|
| >4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis} | Back alignment and structure |
|---|
| >4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} | Back alignment and structure |
|---|
| >3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B* | Back alignment and structure |
|---|
| >4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} | Back alignment and structure |
|---|
| >3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP} | Back alignment and structure |
|---|
| >2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B* | Back alignment and structure |
|---|
| >3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} | Back alignment and structure |
|---|
| >3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
| >3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis} | Back alignment and structure |
|---|
| >3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui} | Back alignment and structure |
|---|
| >4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 | Back alignment and structure |
|---|
| >3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
| >2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans} | Back alignment and structure |
|---|
| >2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A | Back alignment and structure |
|---|
| >3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} | Back alignment and structure |
|---|
| >3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP} | Back alignment and structure |
|---|
| >2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} | Back alignment and structure |
|---|
| >1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5 | Back alignment and structure |
|---|
| >1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5 | Back alignment and structure |
|---|
| >3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
| >1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 | Back alignment and structure |
|---|
| >3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
| >2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A | Back alignment and structure |
|---|
| >4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus} | Back alignment and structure |
|---|
| >2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* | Back alignment and structure |
|---|
| >2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
| >1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} | Back alignment and structure |
|---|
| >2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
| >3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A* | Back alignment and structure |
|---|
| >4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A | Back alignment and structure |
|---|
| >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* | Back alignment and structure |
|---|
| >3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A | Back alignment and structure |
|---|
| >3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
| >1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ... | Back alignment and structure |
|---|
| >1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1 | Back alignment and structure |
|---|
| >3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} | Back alignment and structure |
|---|
| >3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} | Back alignment and structure |
|---|
| >3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A* | Back alignment and structure |
|---|
| >1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ... | Back alignment and structure |
|---|
| >3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 | Back alignment and structure |
|---|
| >1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1 | Back alignment and structure |
|---|
| >2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A | Back alignment and structure |
|---|
| >2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
| >4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus} | Back alignment and structure |
|---|
| >3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus} | Back alignment and structure |
|---|
| >3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* | Back alignment and structure |
|---|
| >4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} | Back alignment and structure |
|---|
| >1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 | Back alignment and structure |
|---|
| >3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* | Back alignment and structure |
|---|
| >1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* | Back alignment and structure |
|---|
| >3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
| >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
| >1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* | Back alignment and structure |
|---|
| >3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A | Back alignment and structure |
|---|
| >3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
| >3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
| >3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* | Back alignment and structure |
|---|
| >2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* | Back alignment and structure |
|---|
| >1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8 | Back alignment and structure |
|---|
| >3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A | Back alignment and structure |
|---|
| >1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8 | Back alignment and structure |
|---|
| >2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* | Back alignment and structure |
|---|
| >2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A | Back alignment and structure |
|---|
| >1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* | Back alignment and structure |
|---|
| >3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
| >3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* | Back alignment and structure |
|---|
| >3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9 | Back alignment and structure |
|---|
| >1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A | Back alignment and structure |
|---|
| >2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 959 | ||||
| d2o9ca1 | 187 | d.110.2.1 (A:135-321) Bacteriophytochrome BphP {De | 2e-71 | |
| d2veaa2 | 188 | d.110.2.4 (A:327-514) Phytochrome-like protein Cph | 1e-67 | |
| d3c2wa1 | 192 | d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Ps | 1e-64 | |
| d2oola1 | 194 | d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodop | 7e-62 | |
| d2veaa1 | 196 | d.110.2.1 (A:131-326) Phytochrome-like protein Cph | 1e-61 | |
| d3c2wa2 | 185 | d.110.2.4 (A:310-494) Bacteriophytochrome BphP {Ps | 1e-55 | |
| d2k2na1 | 170 | d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synec | 3e-47 | |
| d2veaa3 | 127 | d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 | 9e-26 | |
| d2oola2 | 114 | d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodops | 2e-24 | |
| d2o9ca2 | 127 | d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Dein | 6e-24 | |
| d3c2wa3 | 113 | d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseu | 5e-20 | |
| d1mzua_ | 110 | d.110.3.1 (A:) PYP domain of sensor histidine kina | 6e-06 | |
| d1n9la_ | 109 | d.110.3.6 (A:) Putative blue light receptor, phot- | 0.004 |
| >d2o9ca1 d.110.2.1 (A:135-321) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]} Length = 187 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: GAF domain-like family: GAF domain domain: Bacteriophytochrome BphP species: Deinococcus radiodurans [TaxId: 1299]
Score = 232 bits (592), Expect = 2e-71
Identities = 67/184 (36%), Positives = 109/184 (59%), Gaps = 8/184 (4%)
Query: 218 SAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYL 277
+A+ L++ P ++ L + + V++LTG+DRVMLY F D GEV++E RR L +L
Sbjct: 8 NAMFALESAP--NLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFL 65
Query: 278 GIHFPANDIPQAARFLFKQNRVRMICDCHA--IPVMVIQSKELKQPLCLVNSTLRSPHGC 335
G FPA+DIP AR L+ ++ +R+ D A +P+ + + + P L + LR+
Sbjct: 66 GHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPM 125
Query: 336 HLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHHTSPRYIPFPLRYACEFLVQAFSLQ 395
H+QY+ NMG +SL ++V++ +LWGL+ CHH +P +P LR E L + SLQ
Sbjct: 126 HMQYLRNMGVGSSLSVSVVVGG----QLWGLIACHHQTPYVLPPDLRTTLESLGRLLSLQ 181
Query: 396 LYME 399
+ ++
Sbjct: 182 VQVK 185
|
| >d2veaa2 d.110.2.4 (A:327-514) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 188 | Back information, alignment and structure |
|---|
| >d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} Length = 192 | Back information, alignment and structure |
|---|
| >d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 194 | Back information, alignment and structure |
|---|
| >d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 196 | Back information, alignment and structure |
|---|
| >d3c2wa2 d.110.2.4 (A:310-494) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} Length = 185 | Back information, alignment and structure |
|---|
| >d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]} Length = 170 | Back information, alignment and structure |
|---|
| >d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 127 | Back information, alignment and structure |
|---|
| >d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 114 | Back information, alignment and structure |
|---|
| >d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]} Length = 127 | Back information, alignment and structure |
|---|
| >d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} Length = 113 | Back information, alignment and structure |
|---|
| >d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]} Length = 110 | Back information, alignment and structure |
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| >d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 109 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 959 | |||
| d2o9ca1 | 187 | Bacteriophytochrome BphP {Deinococcus radiodurans | 100.0 | |
| d2veaa1 | 196 | Phytochrome-like protein Cph1 {Synechocystis sp. p | 100.0 | |
| d2oola1 | 194 | Sensor protein PhyB2 {Rhodopseudomonas palustris [ | 100.0 | |
| d3c2wa1 | 192 | Bacteriophytochrome BphP {Pseudomonas aeruginosa [ | 100.0 | |
| d2k2na1 | 170 | Sensor protein CYB2465 {Synechococcus sp. [TaxId: | 100.0 | |
| d2veaa2 | 188 | Phytochrome-like protein Cph1 {Synechocystis sp. p | 100.0 | |
| d3c2wa2 | 185 | Bacteriophytochrome BphP {Pseudomonas aeruginosa [ | 99.98 | |
| d2veaa3 | 127 | Phytochrome-like protein Cph1 {Synechocystis sp. p | 99.91 | |
| d2oola2 | 114 | Sensor protein PhyB2 {Rhodopseudomonas palustris [ | 99.91 | |
| d2o9ca2 | 127 | Bacteriophytochrome BphP {Deinococcus radiodurans | 99.9 | |
| d3c2wa3 | 113 | Bacteriophytochrome BphP {Pseudomonas aeruginosa [ | 99.87 | |
| d1n9la_ | 109 | Putative blue light receptor, phot-lov1 domain {Gr | 99.57 | |
| d2c2aa1 | 89 | Sensor histidine kinase TM0853 {Thermotoga maritim | 99.52 | |
| d1ew0a_ | 130 | Histidine kinase FixL heme domain {Rhizobium melil | 99.51 | |
| d1ew0a_ | 130 | Histidine kinase FixL heme domain {Rhizobium melil | 99.5 | |
| d1n9la_ | 109 | Putative blue light receptor, phot-lov1 domain {Gr | 99.5 | |
| d1bywa_ | 110 | Erg potassium channel, N-terminal domain {Human (H | 99.5 | |
| d1p97a_ | 114 | Hypoxia-inducible factor Hif2a, C-terminal domain | 99.47 | |
| d1jnua_ | 104 | Photoreceptor phy3 flavin-binding domain, lov2 {Ma | 99.45 | |
| d1p97a_ | 114 | Hypoxia-inducible factor Hif2a, C-terminal domain | 99.42 | |
| d1bywa_ | 110 | Erg potassium channel, N-terminal domain {Human (H | 99.39 | |
| d1jnua_ | 104 | Photoreceptor phy3 flavin-binding domain, lov2 {Ma | 99.36 | |
| d1xj3a1 | 106 | Histidine kinase FixL heme domain {Bradyrhizobium | 99.28 | |
| d1v9ya_ | 113 | Direct oxygen sensor protein, DOS {Escherichia col | 99.27 | |
| d1xj3a1 | 106 | Histidine kinase FixL heme domain {Bradyrhizobium | 99.24 | |
| d1v9ya_ | 113 | Direct oxygen sensor protein, DOS {Escherichia col | 99.21 | |
| d1nwza_ | 125 | Photoactive yellow protein, PYP {Ectothiorhodospir | 98.98 | |
| d1mzua_ | 110 | PYP domain of sensor histidine kinase Ppr {Rhodosp | 98.91 | |
| d1nwza_ | 125 | Photoactive yellow protein, PYP {Ectothiorhodospir | 98.88 | |
| d1ll8a_ | 114 | N-terminal PAS domain of Pas kinase {Human (Homo s | 98.84 | |
| d1joya_ | 67 | EnvZ histidine kinase {Escherichia coli [TaxId: 56 | 98.83 | |
| d1mc0a2 | 154 | 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF | 98.82 | |
| d1ll8a_ | 114 | N-terminal PAS domain of Pas kinase {Human (Homo s | 98.81 | |
| d1mzua_ | 110 | PYP domain of sensor histidine kinase Ppr {Rhodosp | 98.79 | |
| d1oj5a_ | 109 | PAS domain of steroid receptor coactivator 1A, NCo | 98.58 | |
| d1oj5a_ | 109 | PAS domain of steroid receptor coactivator 1A, NCo | 98.48 | |
| d1mc0a1 | 187 | 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF | 98.44 | |
| d1vhma_ | 159 | Hypothetical protein YebR {Escherichia coli [TaxId | 97.89 | |
| d1f5ma_ | 176 | Hypothetical protein ykl069wp {Baker's yeast (Sacc | 96.59 | |
| d1ixma_ | 179 | Sporulation response regulatory protein Spo0B {Bac | 95.9 | |
| d2oola2 | 114 | Sensor protein PhyB2 {Rhodopseudomonas palustris [ | 95.11 |
| >d2o9ca1 d.110.2.1 (A:135-321) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Profilin-like superfamily: GAF domain-like family: GAF domain domain: Bacteriophytochrome BphP species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=3.4e-50 Score=404.97 Aligned_cols=179 Identities=37% Similarity=0.644 Sum_probs=173.0
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEeecCCCCeEEEEEecCCCCCCccCCccCCCCchHHHHHH
Q 002152 214 KLAVSAISRLQALPGGDIGLLCDTVVEDVQKLTGYDRVMLYNFHDDDHGEVVSEIRRSDLEPYLGIHFPANDIPQAARFL 293 (959)
Q Consensus 214 ~~~~~~~~~l~~~~~~~l~~~~~~~v~~vr~~~g~DRv~iY~F~~d~~G~viaE~~~~~~~s~lg~~~pa~dip~~ar~l 293 (959)
++++.++.+|++ +.|+++||++||+|||++|||||||||||++||+|+||||++.++++|++|++||++|||++++++
T Consensus 4 ~~l~~~~~~ir~--s~dl~~Il~tav~evr~~L~~DRV~IYrf~~d~~g~vvaEs~~~~~~S~lg~~~p~~~~~~~~~~~ 81 (187)
T d2o9ca1 4 HALRNAMFALES--APNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARAL 81 (187)
T ss_dssp HHHHHHHHHHHH--CCSHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHH
T ss_pred HHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHhCCCEeEEEEECCCCCEEEEEEEECCCCCCCCCCccChHHHHHHHHHH
Confidence 456788999999 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCEEEEecCCCCCccccc--ccccCCccccccccccCCChhhHHHHhhcCceeEEEEEEEEcCCCCCceeEEEEeec
Q 002152 294 FKQNRVRMICDCHAIPVMVIQ--SKELKQPLCLVNSTLRSPHGCHLQYMTNMGSIASLVMAVIINSKDSMKLWGLVVCHH 371 (959)
Q Consensus 294 y~~~~~r~i~d~~~~~~~l~~--~~~~~~~ldls~s~lRsvsp~h~~yl~nmgv~asl~v~i~~~~~~~~~LWGLi~~hh 371 (959)
|.+|++|+|+|++++++++.+ ++.++.++||+.++||++||||++||+||||+|+|+|||+++| +|||||+|||
T Consensus 82 ~~~~~~~~i~dv~~~~~~l~~~~~~~~~~~~dl~~~~l~~~s~~~~~~L~~~~vkA~L~vPI~~~~----~LWGLL~~H~ 157 (187)
T d2o9ca1 82 YTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGG----QLWGLIACHH 157 (187)
T ss_dssp HHHSCEEEESCTTCCCEEEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHTTCSEEEEEEEEETT----EEEEEEEEEE
T ss_pred HHcCCeEEEeecccCccccccccccccCCCcccccchhccccHHHHHHHHhcCCCeEEEEEEEECC----eeEEEEEEEC
Confidence 999999999999999999975 6788999999999999999999999999999999999999999 9999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHH
Q 002152 372 TSPRYIPFPLRYACEFLVQAFSLQLYM 398 (959)
Q Consensus 372 ~~pr~~~~~~r~~~~~l~~~~s~~l~~ 398 (959)
|+||+|++++|.+||+|++++|++|+.
T Consensus 158 ~~pr~~~~~~r~~~e~l~~~ls~~l~~ 184 (187)
T d2o9ca1 158 QTPYVLPPDLRTTLESLGRLLSLQVQV 184 (187)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999864
|
| >d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
| >d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
| >d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]} | Back information, alignment and structure |
|---|
| >d2veaa2 d.110.2.4 (A:327-514) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
| >d3c2wa2 d.110.2.4 (A:310-494) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d2veaa3 d.110.3.9 (A:4-130) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
| >d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
| >d2o9ca2 d.110.3.9 (A:4-130) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
| >d3c2wa3 d.110.3.9 (A:5-117) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
| >d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
| >d1ew0a_ d.110.3.2 (A:) Histidine kinase FixL heme domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
| >d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
| >d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]} | Back information, alignment and structure |
|---|
| >d1p97a_ d.110.3.7 (A:) Hypoxia-inducible factor Hif2a, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bywa_ d.110.3.6 (A:) Erg potassium channel, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]} | Back information, alignment and structure |
|---|
| >d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
| >d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1xj3a1 d.110.3.2 (A:154-259) Histidine kinase FixL heme domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
| >d1v9ya_ d.110.3.2 (A:) Direct oxygen sensor protein, DOS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]} | Back information, alignment and structure |
|---|
| >d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]} | Back information, alignment and structure |
|---|
| >d1nwza_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Ectothiorhodospira halophila [TaxId: 1053]} | Back information, alignment and structure |
|---|
| >d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ll8a_ d.110.3.5 (A:) N-terminal PAS domain of Pas kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr {Rhodospirillum centenum [TaxId: 34018]} | Back information, alignment and structure |
|---|
| >d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d2oola2 d.110.3.9 (A:26-139) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
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