Citrus Sinensis ID: 002185

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-----
Protein Sequence
MGLVMPVILQLVKLCVIGFAFTVQGSAGYGIPPSPAIIGGHFLLPRLPVTFTLKPHLLGGHAPSPIELPTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSMPGPLPPVAQKRNASNREAPIAEPIAPGPFPPGNSRQKSPVARPIIPGGTPTASPDPDVPPSTPPLSVDGKRVGKPVAEPSYDIPMPPPVNHSPSKAPSTHKYMRHSNHSPLPPFSSPKPPQNNGNDTPVSSPLASFPKHRDVRNKIASSPAPSYFISPTTSIHQGPVVPPSFIPTSRKRHYGPPPLNSVSPSHSPLPTPVSRVPTSPSPSPTSASGQTELPLLPPKSSPSEPIRAFPPPPPNADCSTTICTEPYTNTPPGSPCGCVWPMQVGLRLSVALYTFFPLVSELAGEIAAGVFMKQSQVRIIGANAAEQPDKTVVLTDLVPLGEKFDNTTAFLTYQRFWHKQVVIKSSYFGDYEVLYVRYPGLPPSPPSASSSIGIIDDGPYSGNNGRATKPEGVDVPKRRQKYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQAEEVPQSLQTSHVKPSVVLIRLPCHLDLALQLIQGLLRPLVLVK
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHcccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHcccccccEEEEEccccccccccEEEEEccccccccccHHHHHHHHHHHcccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccEHHHHHHHHHHHEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccEEEEccccccccccEEEEEEccccccccccHHHHHEHHHHHccEEEEcccccccEEEEEEEcccccccccccccccccccccccccccccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHcccEEEcc
Coil and Loop (DISEMBL)
MGLVMPVILQLVKLCVIGFAFTvqgsagygippspaiigghfllprlpvtftlkphllgghapspielpthsapppvnipsfspstpavsapfdmapppsliptnpvasppsitapppvnmapppslipttpvaspppitapplvnvlpapslipttplasplsskafppasppsnaarppashpsntarppashpsrtapppashpsntalpsktapspashpsntalppaslpsktapppashlsntapppashpyktsplpashpsktapppashpsntapppashpsktapppashpsntapppashpsntapppashpsntapppashpsntapppashssktapppashpsntalppashpsnpaippashpsntaippashpsntapphashpsntaltpashpsniappplfvpvlpsalpgkapvsqspislpdapaatprgnfhrhspaihpsmpgplppvaqkrnasnreapiaepiapgpfppgnsrqkspvarpiipggtptaspdpdvppstpplsvdgkrvgkpvaepsydipmpppvnhspskapsthkymrhsnhsplppfsspkppqnngndtpvssplasfpkhrdvrnkiasspapsyfispttsihqgpvvppsfiptsrkrhygppplnsvspshsplptpvsrvptspspsptsasgqtelpllppksspsepirafpppppnadcsttictepytntppgspcgcvwpmqvgLRLSVALYTFFPLVSELAGEIAAGVFMKQSQVRIIganaaeqpdktvvltdlvplgekfdntTAFLTYQRFWHKQVVIKSSYFGDYEVLYvrypglppsppsasssigiiddgpysgnngratkpegvdvpkrrqkyglsgGMIAIVVLSAFVAVVLCSAAAWVLLFKYKshacqaeevpqslqtshvkpsvvlirLPCHLDLALQLIQGLlrplvlvk
Flexible Loop (DISEMBL)
MGLVMPVILQLVKLCVIGFAFTVQGSAGYGIPPSPAIIGGHFLLPRLPVTFTLKPHLLGGHAPSPIELPTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSMPGPLPPVAQKRNASNREAPIAEPIAPGPFPPGNSRQKSPVARPIIPGGtptaspdpdvpPSTPPLSVDGKRVGKPVAEpsydipmpppvnhSPSKAPSTHKYMRHSNHSPLPPFSSPKPPQNNGNDTPVSSPLASFPKHRDVRNKIASSPAPSYFIspttsihqgpvVPPSFIPTSRKRHYGPPPLNSVSPSHSPLPTPVSRVPTSPSPSPTSASGQTELPLLPPKSSPSEPIRAFPPPPPNADCSTTICTEPYTNTPPGSPCGCVWPMQVGLRLSVALYTFFPLVSELAGEIAAGVFMKQSQVRIIganaaeqpdktVVLTDLVPLGEKFDNTTAFLTYQRFWHKQVVIKSSYFGDYEVLYVRYPGLPPSPPSASSSIGIIDDgpysgnngratkpegvdvpKRRQKYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQAEEVPQSLQTSHVKPSVVLIRLPCHLDLALQLIQgllrplvlvk
Low Complexity Region (SEG)
MGLVMPVILQLVKLCVIGFAFTVQGSAGYGIPPSPAIIGGHFLLPRLPVTFTLKPHLLGGHAPSPIELPTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITApppvnmapppSlipttpvaspppitapplvNVLPAPSLIPTTplasplsskafppasppsnaarppashpsNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSMPGPLPPVAQKRNASNReapiaepiapgpfppgNSRQKSPVARPIIPGGtptaspdpdvppstpplsvdGKRVGKPVAEPSYDIPMPPPVNHSPSKAPSTHKYMRHSNHsplppfsspkppQNNGNDTPVSSPLASFPKHRDVRNKIASSPAPSYFISPTTSIHQGPVVPPSFIPTSRKRHYGPPPLNSVSPSHsplptpvsrvptspspsptsasGQTelpllppksspsepIRAFpppppNADCSTTICTEPYTNTPPGSPCGCVWPMQVGLRLSVALYTFFPLVSELAGEIAAGVFMKQSQVRIIGANAAEQPDKTVVLTDLVPLGEKFDNTTAFLTYQRFWHKQVVIKSSYFGDYEVLYVRypglppsppsasssigiiddgpysgNNGRATKPEGVDVPKRRQKYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQAEEVPQSLQTSHVKPSVVLIRLPCHldlalqliqgllrplvlVK
Disordered region (IsUnstruct)
**LVMPVILQLVKLCVIGFAFTVQGSAGYGIPPSPAIIGGHFLLPRLPVTFTLKPHLLG*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************ICTEPYTNTPPGSPCGCVWPMQVGLRLSVALYTFFPLVSELAGEIAAGVFMKQSQVRIIGANAAEQPDKTVVLTDLVPLGEKFDNTTAFLTYQRFWHKQVVIKSSYFGDYEVLYVRYPG****************************************KYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQAEEVPQSLQTSHVKPSVVLIRLPCHLDLALQLIQGLLRPLVL**
Disordered Region (DISOPRED)
***VMPVILQLVKLCVIGFA*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VWPMQVGLRLSVALYTFFPLVSELAGEIAAGVFMKQSQVRIIGANAAEQPDKTVVLTDLVPLGEKFDNTTAFLTYQRFWHKQVVIKSSYFGDYEVLYVRYPG******************************EG************SGGMIAIVVLSAFVAVVLCSAAAWVLLFKYK****************************CHLDLALQLIQGLLRPLVLVK
Disordered Region (DISEMBL)
MGLVMPVILQLVKLCVIGFAFTVQGSAGYGIPPSPAIIGGHFLLPRLPVTFTLKPHLLGGHAPSPIELPTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASP**************************************************************************************************************************************************************************************************************NPAIPPASHPSNTAIPP***********************SHPSNIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSMPGPLPPVAQKRNASNREAPIAEPIAPGPFPPGNSRQKSPVARPIIPGGT*******************GKRVGKPVAEPSYDIPMPPPVN******************SPLPPFSSPKPPQNNGNDTPVSSPLASFPKHRDVRNKIASSPAPSYFISPTTSIHQGPVVPPSFIPTSRKRHYGPPP**********************************LPLL********PIRAFPPPPPNADCSTTICTEPYTNTPPGSPCGCVWPMQVGLRLSVALYTFFPLVSELAGEIAAGVFMKQSQVRIIGANAAEQPDKTVVLTDLVPLGEKFDNTTAFLTYQRFWHKQVVIKSSYFGDYEVLYVRYPGLPPSPPSASSSIGIIDDGPYSGNNGRATKPEGVDVPKRRQKYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQA**********HVKPSVVLIRLPCHLDLALQLIQGLLRPLVLVK
Disordered Region (DISPRO)
MGLVMPVILQLVKLCVIGFAFTVQ******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************CGCVWPMQVGLRLSVALYTFFPLVSELAGEIAAGVFMKQSQVRIIGANAAEQPDKTVVLTDLVPLGEKFDNTTAFLTYQRFWHKQVVIKSSYFGDYEVLYVRYPGLPPSPPSASSSIGIIDDGPYSGNNGRATKPEGVDVPKRRQKYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSH***********************RLPCHLDLALQLIQGLLRPLVLVK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGLVMPVILQLVKLCVIGFAFTVQGSAGYGIPPSPAIIGGHFLLPRLPVTFTLKPHLLGGHAPSPIELPTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSMPGPLPPVAQKRNASNREAPIAEPIAPGPFPPGNSRQKSPVARPIIPGGTPTASPDPDVPPSTPPLSVDGKRVGKPVAEPSYDIPMPPPVNHSPSKAPSTHKYMRHSNHSPLPPFSSPKPPQNNGNDTPVSSPLASFPKHRDVRNKIASSPAPSYFISPTTSIHQGPVVPPSFIPTSRKRHYGPPPLNSVSPSHSPLPTPVSRVPTSPSPSPTSASGQTELPLLPPKSSPSEPIRAFPPPPPNADCSTTICTEPYTNTPPGSPCGCVWPMQVGLRLSVALYTFFPLVSELAGEIAAGVFMKQSQVRIIGANAAEQPDKTVVLTDLVPLGEKFDNTTAFLTYQRFWHKQVVIKSSYFGDYEVLYVRYPGLPPSPPSASSSIGIIDDGPYSGNNGRATKPEGVDVPKRRQKYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQAEEVPQSLQTSHVKPSVVLIRLPCHLDLALQLIQGLLRPLVLVK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	955	2.2.26 [Sep-21-2011]
Q8RWW0	744	Receptor-like serine/thre	no	no	0.194	0.25	0.459	4e-40

>sp|Q8RWW0|ALE2_ARATH Receptor-like serine/threonine-protein kinase ALE2 OS=Arabidopsis thaliana GN=ALE2 PE=1 SV=1

 Score =  167 bits (423), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 96/209 (45%), Positives = 132/209 (63%), Gaps = 23/209 (11%)

Query: 704 PPNADCSTTICTEPYTNTPPGSPCGCVWPMQVGLRLSVALYTFFPLVSELAGEIAAGVFM 763
           P + DC  T C EP T+TP GSPCGCV+PM+V L LSVA ++ FP+ +EL  E+AAG ++
Sbjct: 93  PSSHDCQQT-CVEPLTSTPFGSPCGCVFPMKVQLLLSVAPFSIFPVTNELEIEVAAGTYL 151

Query: 764 KQSQVRIIGANA-AEQPDKTVVLTDLVPLGEKFDNTTAFLTYQRFWHKQVVIKSSYFGDY 822
           +QSQV+I+GA+A +E   KTVV  +LVPLGEKFDNTTA L YQRF HK+V +  + FGDY
Sbjct: 152 EQSQVKIMGASADSENQGKTVVDINLVPLGEKFDNTTATLIYQRFRHKKVPLNETVFGDY 211

Query: 823 EVLYVRYPGLPPSPPSASSSIGIIDDGPYSGNNGRATKPEGVDVPKRRQKY-----GLSG 877
           EV ++ YPG+P S P          +G  +G+      P G+ +P     +     G+  
Sbjct: 212 EVTHISYPGIPSSSP----------NGDVTGD-----APGGLPIPINATTFANKSQGIGF 256

Query: 878 GMIAIVVLSAFVAVVLCSAAAWVLLFKYK 906
             IAI+ LS FV ++L    A  ++ K+K
Sbjct: 257 RTIAIIALSGFV-LILVLVGAISIIVKWK 284

Required during the differentiation of the protoderm into shoots epidermis and cuticle.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	955
297738662	1046	unnamed protein product [Vitis vinifera]	0.504	0.460	0.544	1e-115
356558353	1255	PREDICTED: receptor-like serine/threonin	0.500	0.380	0.526	1e-113
124360779	986	Protein kinase [Medicago truncatula]	0.489	0.473	0.514	1e-113
255546109	1282	conserved hypothetical protein [Ricinus	0.471	0.351	0.525	1e-112
357449795	1478	Serine/threonine protein kinase PBS1 [Me	0.428	0.276	0.550	1e-112
359484309	992	PREDICTED: receptor-like serine/threonin	0.494	0.475	0.539	1e-110
224122486	1156	predicted protein [Populus trichocarpa]	0.473	0.391	0.531	1e-110
449436078	1050	PREDICTED: receptor-like serine/threonin	0.433	0.394	0.527	1e-107
356545725	1270	PREDICTED: uncharacterized protein LOC10	0.435	0.327	0.533	2e-94
297743085	815	unnamed protein product [Vitis vinifera]	0.404	0.473	0.493	1e-88

>gi|297738662|emb|CBI27907.3| unnamed protein product [Vitis vinifera]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 304/558 (54%), Positives = 354/558 (63%), Gaps = 76/558 (13%)

Query: 400 PSNTALTPASHPSNIAPPPLFVPVL-----PSALPGKAPVSQSPISLPDAPAA----TPR 450
           PSN  ++P   P    PP L VP+      PSA   KAP +++P+  P AP A     P 
Sbjct: 122 PSNPRMSP---PHYKTPPHLKVPITLPSVPPSASQRKAPDNKAPVWAPVAPIAPVAPVPD 178

Query: 451 GNFHRHSPAI------HPSMPGPLPPVAQKRNASNREAPIAEPIAPGPFPPGNSRQKSPV 504
           G   R  P        HP MPG LPP A  RN  + +API+ PIAP              
Sbjct: 179 GPPQRKWPQNPPSMHPHPVMPGLLPPSAHNRNKPDNKAPISTPIAP-------------- 224

Query: 505 ARPIIPGGTPTASPDPDVPP-STPPLSVDGKRVGKPVAEPSYDIPMP-PPVNHSPSKAPS 562
                         DPDV P STPPL+   +R   PVA P    P P  PVNHSP+KAPS
Sbjct: 225 --------------DPDVTPISTPPLASHWRRKQMPVAAPPNRTPDPLSPVNHSPAKAPS 270

Query: 563 THKYMRHSNHSPLPPFSSPKPPQNNGNDTPVSSPLASFPKHRDVRNKIAS-SPAPSYFIS 621
            H  MRHSN +P    S+P+ P N G+ +P SSP  SF KH   RNKI   +PA SY I 
Sbjct: 271 IHNAMRHSN-AP-ASLSTPQSPTNKGSQSPASSPSMSFSKHHRGRNKITGPAPASSYLIP 328

Query: 622 PTTSIHQGPVV------PPSFIPTSRKRHYGPPPLN---SVSPSHSPLPTPVSRVPTSPS 672
           P +  HQGPV+      PP  +P   + H+ P PLN    +SP+HSP P+ ++    +PS
Sbjct: 329 PPSPRHQGPVISPAPSHPPKSLPNRTRTHHAPLPLNPGSRISPAHSPSPSSLTYPSPAPS 388

Query: 673 PSPTSASGQTELPLLPPKSSPSE-----------PIRAFPPPPPNADCSTTICTEPYTNT 721
           PSPT+ SGQT +P L PK SPS            P++A PPPPPN DCS  +CTEP TNT
Sbjct: 389 PSPTARSGQTMIPFLSPKISPSRLPPSSKMPAPPPVQALPPPPPNQDCSAIVCTEPNTNT 448

Query: 722 PPGSPCGCVWPMQVGLRLSVALYTFFPLVSELAGEIAAGVFMKQSQVRIIGANAAE-QPD 780
           PPGSPCGCV PMQV LRL+VALYTFFPLVSELA EIAAGVFM+QSQVRI+GANAA  + +
Sbjct: 449 PPGSPCGCVLPMQVQLRLNVALYTFFPLVSELAEEIAAGVFMRQSQVRIMGANAASPEAE 508

Query: 781 KTVVLTDLVPLGEKFDNTTAFLTYQRFWHKQVVIKSSYFGDYEVLYVRYPGLPPSPPSAS 840
           KT+VL DLVPLGEKFDNTTAFLTYQRFW KQVVIK+ +FGDYEV+YV YPGLPPSPPSA 
Sbjct: 509 KTIVLIDLVPLGEKFDNTTAFLTYQRFWGKQVVIKNLFFGDYEVIYVNYPGLPPSPPSAP 568

Query: 841 SSIGIIDDGPYSG--NNGRATKPEGVDVPKRRQKYGLSGGMIAIVVLSAFVAVVLCSAAA 898
           SSI +ID+GPYSG  NNGR   P GVDV K R K+GLSG +IAI+VLSA VAVVLCSA A
Sbjct: 569 SSITMIDNGPYSGQGNNGRTIHPLGVDVHKNRHKHGLSGSVIAIIVLSASVAVVLCSAVA 628

Query: 899 WVLLFKYKSHACQAEEVP 916
           WV LFK     C  + VP
Sbjct: 629 WVFLFKKTD--CIGQPVP 644

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558353|ref|XP_003547471.1| PREDICTED: receptor-like serine/threonine-protein kinase ALE2-like [Glycine max]

 Score =  418 bits (1074), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 268/509 (52%), Positives = 335/509 (65%), Gaps = 31/509 (6%)

Query: 433 PVSQSPISLPDAPAATPRGNFHRHSPAIHPSMPGPLPPVAQKRNASNREAPI-AEPIAPG 491
           PVSQ+P+++P A       N  ++S    P+  G  PP  Q R A+N  +   A  + P 
Sbjct: 323 PVSQAPVAMPPA-------NLPKYSSVSQPTHHGNSPPDVQNRTANNGHSHTPAPEMPPS 375

Query: 492 PFPPGNSRQKSPVARPIIPGGTPTASPDPDVPPS-TPPLSVDGKRVGKPVAEPSYDIPMP 550
             PP       P+A  +IP  +P  SP P V P+ TP  S +  + G+PV+ P Y IP P
Sbjct: 376 VTPPSPFPVDPPLAHHVIPAASPPKSPAPVVSPALTPSRSFNWTKGGEPVSAPPYKIPKP 435

Query: 551 -PPVNHSPSKAPSTHKYMRHSNHSPLPPFSSPKPPQNNGNDTPVSSPLASFPKHRDVRNK 609
            P + HSP++APS     R  +H+P P  SSPK P N  +  P SSP  +F KH   RN 
Sbjct: 436 LPAIVHSPAQAPSCAHKERQFHHAPEPLISSPKSPFNK-DHPPASSPSTTFYKHHYTRNT 494

Query: 610 IAS-SPAPSYFISPTTSIHQGPVVPPSFIPTSRKRHYGPPPLN---SVSPSHSPLPTPVS 665
           + S +PA S+F+SP+TS HQ    PPS +PTS +RH+ PPP+N   SVSPS   + +PV+
Sbjct: 495 VTSPAPASSHFVSPSTSKHQDGSNPPSPLPTSGQRHHAPPPMNTGSSVSPSSLHIQSPVN 554

Query: 666 RVPTSPSPSPTSASGQTELPLLPPKSSPSEP------------IRAFPPPPPNADCSTTI 713
           +V  +PSP    +   T++PL PPK SPS P             +A PPPPPN DC + +
Sbjct: 555 QVSPAPSPIFNISPHSTKIPLHPPKVSPSRPSSKIPKKPVRPRFQALPPPPPNEDCISVV 614

Query: 714 CTEPYTNTPPGSPCGCVWPMQVGLRLSVALYTFFPLVSELAGEIAAGVFMKQSQVRIIGA 773
           C+EPYT+TPPG+PC CVWPM+VGLRLSV+LYTFFPLVSE A EIA GVFMKQSQVRI+GA
Sbjct: 615 CSEPYTSTPPGAPCKCVWPMKVGLRLSVSLYTFFPLVSEFASEIATGVFMKQSQVRIMGA 674

Query: 774 NAA-EQPDKTVVLTDLVPLGEKFDNTTAFLTYQRFWHKQVVIKSSYFGDYEVLYVRYPGL 832
           +AA +QPDKT+V  DLVPLGE+FDNTTAFLT +RFWHKQVVIK+SYFGDY VLYV YPGL
Sbjct: 675 DAANQQPDKTIVFIDLVPLGEEFDNTTAFLTSERFWHKQVVIKTSYFGDYVVLYVTYPGL 734

Query: 833 PPSPPSASSSIGIIDDGPYS--GNNGRATKPEGVDVPKRRQKYGLSGGMIAIVVLSAFVA 890
           PPSPP   SSI IID GPYS  GNNGR  KP GVD+ KR+ + GLS G+IA++ LS F+ 
Sbjct: 735 PPSPPLPPSSISIIDGGPYSGGGNNGRTIKPLGVDISKRQHRGGLSKGIIAVIALSVFLV 794

Query: 891 VVLCSAAAWVLLFKYKSHACQAEEVPQSL 919
           V LC AAA +  FKY+ H  Q    P+ L
Sbjct: 795 VALCFAAA-LASFKYRDHVSQTPSTPRIL 822

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124360779|gb|ABN08751.1| Protein kinase [Medicago truncatula]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 260/505 (51%), Positives = 330/505 (65%), Gaps = 38/505 (7%)

Query: 433 PVSQSPISLPDAPAATPRGNFHRHSPAIHPSMPGPLPPVAQKRNASNREAPIAEPIAPGP 492
           PVSQ       AP A P  NF ++S    PS  G +PP               EP+ P P
Sbjct: 51  PVSQ-------APVAEPPANFPKNSSVSQPSQHGSVPPNVHNTTIHKGHIHTPEPVMPPP 103

Query: 493 ---FPPGNSRQKSPVARPIIPGGTPTASPDPDVPPS-TPPLSVDGKRVGKPVAEPSYDIP 548
              FP        P+  P+IP   P   P P + P+ TP  S +GK  G+PV+ P    P
Sbjct: 104 ISTFPV-----DPPLIHPVIPAAPPNEVPAPVISPTLTPSRSFNGKNGGEPVSAPLNKKP 158

Query: 549 M-PPPVNHSPSKAPSTHKYMRHSNHSPLPPFSSPKPPQNNGNDTPVSSPLASFPKHRDVR 607
             PP + +SP++APS +K  R  +H+P P  S PK P N  + +P SSP  +F KH+  R
Sbjct: 159 KSPPAIVNSPAQAPSVNK-ARPFHHAPEPLTSPPKSPFNKEDHSPASSPSTTFHKHQHTR 217

Query: 608 NKIAS-SPAPSYFISPTTSIHQGPVVPPSFIPTSRKRHYGPPPLN---SVSPSHSPLPTP 663
           N I S +PA SYF+SP TS HQ   +PPSF+PT+R+RH  P P+N   + SP   P+ +P
Sbjct: 218 NTITSPAPASSYFVSPPTSKHQDKPIPPSFLPTNRRRHNAPAPMNRGSADSPFTFPIQSP 277

Query: 664 VSRVPTSPSPSPTSASGQTELPLLPPKSSPSEP------------IRAFPPPPPNADCST 711
           VS+V  +PSPS  +    T++P  PPK SP               ++A PPPPPN DC +
Sbjct: 278 VSQVSPAPSPSFKTFPHSTKIPFHPPKISPQRSFSKSPKKPILPRVQALPPPPPNEDCLS 337

Query: 712 TICTEPYTNTPPGSPCGCVWPMQVGLRLSVALYTFFPLVSELAGEIAAGVFMKQSQVRII 771
            +C+EPYTN+PPG PC C+WPM+VGLRL+V LYTFFPLVSELA EI++GVFMKQSQVRI+
Sbjct: 338 FVCSEPYTNSPPGVPCMCIWPMRVGLRLNVPLYTFFPLVSELASEISSGVFMKQSQVRIM 397

Query: 772 GANAA-EQPDKTVVLTDLVPLGEKFDNTTAFLTYQRFWHKQVVIKSSYFGDYEVLYVRYP 830
           GANAA +QPDKT  L DLVPLGE+FDNTTAFLT  RFWHK+VVIKSSYFGDYEVLY+ YP
Sbjct: 398 GANAATDQPDKTDALIDLVPLGEQFDNTTAFLTSDRFWHKKVVIKSSYFGDYEVLYISYP 457

Query: 831 GLPPSPPSASSSIGIIDDGPYS--GNNGRATKPEGVDVPKRRQKYGLSGGMIAIVVLSAF 888
           GLPPSPP   SS+ +ID GPYS  GNNGR  KP GVD+ KR+ + GLS G+IAI+ LS+F
Sbjct: 458 GLPPSPPLPPSSVNMIDGGPYSNNGNNGRTIKPLGVDIQKRQHRSGLSKGIIAIIALSSF 517

Query: 889 VAVVLCSAAAWVLLFKYKSHACQAE 913
           +A+VLCSAA + L+ K++ H  +++
Sbjct: 518 LAIVLCSAAVFALI-KFRDHVSESQ 541

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546109|ref|XP_002514114.1| conserved hypothetical protein [Ricinus communis] gi|223546570|gb|EEF48068.1| conserved hypothetical protein [Ricinus communis]

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 267/508 (52%), Positives = 314/508 (61%), Gaps = 58/508 (11%)

Query: 473 QKRNASNREAPIAEPIAPGPFPPGNSRQKSPVARPIIPGGTPTASPDPDVPP-------- 524
             +N S    PI + IAP   PP   RQ  P +  I P   P  SP P V P        
Sbjct: 208 HNKNMSVTGTPITKSIAPVASPPRELRQNQPSSHLIAPTKMPFVSPVPVVSPTRELPRHS 267

Query: 525 --------------------STPPLSVDGKRVGKPVAEPSYDIP-MPPPVNHSPSK---- 559
                               S+PP S+D K+   P+A P  + P   P  +HSP+K    
Sbjct: 268 PSVLPGEPPAILPVPDVSHASSPPTSIDRKKDRSPIAAPPDETPSHLPSADHSPTKGSFS 327

Query: 560 --APSTHKYMRHSNHSPLPPFSSPKPPQNNGNDTPVSSPLASFPKHRDVRNKIASSPAPS 617
             APSTH+   ++++  +P  S P    + GN T  SSP   F K    R    SSPAP+
Sbjct: 328 AVAPSTHEPTGYTSYGLVPSSSPPNHSLSKGNHTSASSPSIPFHKQNHSRTDF-SSPAPA 386

Query: 618 YFISPTTSIHQGPVVPPSFIPTSRKRHYGPPPLN---SVSPSHSPLPTPVSRVPTSPSPS 674
           Y  SP +   QGPV  PSF+PTSR+ HY PPP++   S SPSH   P PV  V  +PSPS
Sbjct: 387 Y--SPPSK-QQGPVASPSFLPTSRRTHYAPPPISPGSSASPSHFHFPKPVINVSPAPSPS 443

Query: 675 PTSASGQTELPLLPPKSSPSEPIRAFPPPPP------------NADCSTTICTEPYTNTP 722
           PT+ASG T++P+L P+ SPS      P  PP            N DCS+T+C EPYTNTP
Sbjct: 444 PTAASGWTKMPILSPEVSPSGSSPRSPKMPPRPPVHALPPPPPNEDCSSTVCVEPYTNTP 503

Query: 723 PGSPCGCVWPMQVGLRLSVALYTFFPLVSELAGEIAAGVFMKQSQVRIIGANAA-EQPDK 781
           PGSPCGCV PMQVGLRLSVALYTFFPLVSELA EIA GVFMKQSQVRI+GANAA +QP+K
Sbjct: 504 PGSPCGCVLPMQVGLRLSVALYTFFPLVSELAQEIATGVFMKQSQVRIMGANAASQQPEK 563

Query: 782 TVVLTDLVPLGEKFDNTTAFLTYQRFWHKQVVIKSSYFGDYEVLYVRYPGLPPSPPSASS 841
           TVVL DLVPLGE+FDNTTA LT+ RFWHKQVVIK+S+FGDYEVLYVRYPGL P  P + S
Sbjct: 564 TVVLIDLVPLGERFDNTTAVLTFHRFWHKQVVIKASFFGDYEVLYVRYPGL-PPSPPSPS 622

Query: 842 SIGIIDDGPYSG--NNGRATKPEGVDVPKRRQKYGLSGGMIAIVVLSAFVAVVLCSAAAW 899
            I IIDDGPYSG  NN R  KP GVDV KR +K GL  GMIAI+ LSA +A++LCSA AW
Sbjct: 623 GITIIDDGPYSGNNNNARTIKPLGVDVHKRHRKDGLGAGMIAIISLSASLALILCSAVAW 682

Query: 900 VLLFKYKSHACQAEEVPQSLQTSHVKPS 927
           VLL +++    Q    PQ L  S  KPS
Sbjct: 683 VLLVRHRGRMSQPTPTPQPLPPSGAKPS 710

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357449795|ref|XP_003595174.1| Serine/threonine protein kinase PBS1 [Medicago truncatula] gi|355484222|gb|AES65425.1| Serine/threonine protein kinase PBS1 [Medicago truncatula]

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 238/432 (55%), Positives = 304/432 (70%), Gaps = 23/432 (5%)

Query: 503  PVARPIIPGGTPTASPDPDVPPS-TPPLSVDGKRVGKPVAEPSYDIPM-PPPVNHSPSKA 560
            P+  P+IP   P   P P + P+ TP  S +GK  G+PV+ P    P  PP + +SP++A
Sbjct: 604  PLIHPVIPAAPPNEVPAPVISPTLTPSRSFNGKNGGEPVSAPLNKKPKSPPAIVNSPAQA 663

Query: 561  PSTHKYMRHSNHSPLPPFSSPKPPQNNGNDTPVSSPLASFPKHRDVRNKIAS-SPAPSYF 619
            PS +K  R  +H+P P  S PK P N  + +P SSP  +F KH+  RN I S +PA SYF
Sbjct: 664  PSVNK-ARPFHHAPEPLTSPPKSPFNKEDHSPASSPSTTFHKHQHTRNTITSPAPASSYF 722

Query: 620  ISPTTSIHQGPVVPPSFIPTSRKRHYGPPPLN---SVSPSHSPLPTPVSRVPTSPSPSPT 676
            +SP TS HQ   +PPSF+PT+R+RH  P P+N   + SP   P+ +PVS+V  +PSPS  
Sbjct: 723  VSPPTSKHQDKPIPPSFLPTNRRRHNAPAPMNRGSADSPFTFPIQSPVSQVSPAPSPSFK 782

Query: 677  SASGQTELPLLPPKSSPSEP------------IRAFPPPPPNADCSTTICTEPYTNTPPG 724
            +    T++P  PPK SP               ++A PPPPPN DC + +C+EPYTN+PPG
Sbjct: 783  TFPHSTKIPFHPPKISPQRSFSKSPKKPILPRVQALPPPPPNEDCLSFVCSEPYTNSPPG 842

Query: 725  SPCGCVWPMQVGLRLSVALYTFFPLVSELAGEIAAGVFMKQSQVRIIGANAA-EQPDKTV 783
             PC C+WPM+VGLRL+V LYTFFPLVSELA EI++GVFMKQSQVRI+GANAA +QPDKT 
Sbjct: 843  VPCMCIWPMRVGLRLNVPLYTFFPLVSELASEISSGVFMKQSQVRIMGANAATDQPDKTD 902

Query: 784  VLTDLVPLGEKFDNTTAFLTYQRFWHKQVVIKSSYFGDYEVLYVRYPGLPPSPPSASSSI 843
             L DLVPLGE+FDNTTAFLT  RFWHK+VVIKSSYFGDYEVLY+ YPGLPPSPP   SS+
Sbjct: 903  ALIDLVPLGEQFDNTTAFLTSDRFWHKKVVIKSSYFGDYEVLYISYPGLPPSPPLPPSSV 962

Query: 844  GIIDDGPYS--GNNGRATKPEGVDVPKRRQKYGLSGGMIAIVVLSAFVAVVLCSAAAWVL 901
             +ID GPYS  GNNGR  KP GVD+ KR+ + GLS G+IAI+ LS+F+A+VLCSAA + L
Sbjct: 963  NMIDGGPYSNNGNNGRTIKPLGVDIQKRQHRSGLSKGIIAIIALSSFLAIVLCSAAVFAL 1022

Query: 902  LFKYKSHACQAE 913
            + K++ H  +++
Sbjct: 1023 I-KFRDHVSESQ 1033

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484309|ref|XP_003633096.1| PREDICTED: receptor-like serine/threonine-protein kinase ALE2-like [Vitis vinifera]

 Score =  407 bits (1047), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 297/551 (53%), Positives = 346/551 (62%), Gaps = 79/551 (14%)

Query: 400 PSNTALTPASHPSNIAPPPLFVPVL-----PSALPGKAPVSQSPISLPDAPAA----TPR 450
           PSN  ++P   P    PP L VP+      PSA   KAP +++P+  P AP A     P 
Sbjct: 11  PSNPRMSP---PHYKTPPHLKVPITLPSVPPSASQRKAPDNKAPVWAPVAPIAPVAPVPD 67

Query: 451 GNFHRHSPAI------HPSMPGPLPPVAQKRNASNREAPIAEPIAPGPFPPGNSRQKSPV 504
           G   R  P        HP MPG LPP A  RN  + +API+ PIAP              
Sbjct: 68  GPPQRKWPQNPPSMHPHPVMPGLLPPSAHNRNKPDNKAPISTPIAP-------------- 113

Query: 505 ARPIIPGGTPTASPDPDVPP-STPPLSVDGKRVGKPVAEPSYDIPMP-PPVNHSPSKAPS 562
                         DPDV P STPPL+   +R   PVA P    P P  PVNHSP+KAPS
Sbjct: 114 --------------DPDVTPISTPPLASHWRRKQMPVAAPPNRTPDPLSPVNHSPAKAPS 159

Query: 563 THKYMRHSNHSPLPPFSSPKPPQNNGNDTPVSSPLASFPKHRDVRNKIAS-SPAPSYFIS 621
            H  MRHSN +P    S+P+ P N G+ +P SSP  SF KH   RNKI   +PA SY I 
Sbjct: 160 IHNAMRHSN-AP-ASLSTPQSPTNKGSQSPASSPSMSFSKHHRGRNKITGPAPASSYLIP 217

Query: 622 PTTSIHQGPVV------PPSFIPTSRKRHYGPPPLN---SVSPSHSPLPTPVSRVPTSPS 672
           P +  HQGPV+      PP  +P   + H+ P PLN    +SP+HSP P+ ++    +PS
Sbjct: 218 PPSPRHQGPVISPAPSHPPKSLPNRTRTHHAPLPLNPGSRISPAHSPSPSSLTYPSPAPS 277

Query: 673 PSPTSASGQT-----ELPLLPPKSSPSE-----------PIRAFPPPPPNADCSTTICTE 716
           PSPT           ++P L PK SPS            P++A PPPPPN DCS  +CTE
Sbjct: 278 PSPTLIYCHVCICTLQVPFLSPKISPSRLPPSSKMPAPPPVQALPPPPPNQDCSAIVCTE 337

Query: 717 PYTNTPPGSPCGCVWPMQVGLRLSVALYTFFPLVSELAGEIAAGVFMKQSQVRIIGANAA 776
           P TNTPPGSPCGCV PMQV LRL+VALYTFFPLVSELA EIAAGVFM+QSQVRI+GANAA
Sbjct: 338 PNTNTPPGSPCGCVLPMQVQLRLNVALYTFFPLVSELAEEIAAGVFMRQSQVRIMGANAA 397

Query: 777 E-QPDKTVVLTDLVPLGEKFDNTTAFLTYQRFWHKQVVIKSSYFGDYEVLYVRYPGLPPS 835
             + +KT+VL DLVPLGEKFDNTTAFLTYQRFW KQVVIK+ +FGDYEV+YV YPGLPPS
Sbjct: 398 SPEAEKTIVLIDLVPLGEKFDNTTAFLTYQRFWGKQVVIKNLFFGDYEVIYVNYPGLPPS 457

Query: 836 PPSASSSIGIIDDGPYS--GNNGRATKPEGVDVPKRRQKYGLSGGMIAIVVLSAFVAVVL 893
           PPSA SSI +ID+GPYS  GNNGR   P GVDV K R K+GLSG +IAI+VLSA VAVVL
Sbjct: 458 PPSAPSSITMIDNGPYSGQGNNGRTIHPLGVDVHKNRHKHGLSGSVIAIIVLSASVAVVL 517

Query: 894 CSAAAWVLLFK 904
           CSA AWV LFK
Sbjct: 518 CSAVAWVFLFK 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122486|ref|XP_002330493.1| predicted protein [Populus trichocarpa] gi|222872427|gb|EEF09558.1| predicted protein [Populus trichocarpa]

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 261/491 (53%), Positives = 311/491 (63%), Gaps = 39/491 (7%)

Query: 474 KRNASNREAPI---AEPIAPGPFPPGNSRQKSPVARPIIPGGTPTASPDPDVP-PSTPPL 529
           K++ S   AP+     P  P   P G   Q S    P++PG  P     P+VP PS P  
Sbjct: 203 KKDVSFSGAPVPNSVSPAVPVVSPMGAMPQNSSATHPVMPGEPPAILSGPNVPHPSAPTP 262

Query: 530 SVDGKRVGKPVAEPSYDIPMP-PPVNHSPSK------APSTHKYMRHSNHSPLPPFSSPK 582
           S+D K+   PV+ P  + P P  P++H P+K      APSTH  MRHSN SP+ P S PK
Sbjct: 263 SIDDKKDEIPVSAPPNETPTPLSPMSHFPAKGSFSGIAPSTHNAMRHSNDSPISPSSLPK 322

Query: 583 PPQNNGNDTPVSSPLASFPKHRDVRNKIA-SSPAPSYFISPTTSIHQGPVVPPSFIPTSR 641
            P    + +   SP   F K     ++I+ S+PA S    P +S  QGPV+PPSF+PTSR
Sbjct: 323 TPLAKQHHSSAPSPSIPFHKQNHESSRISDSAPASSNPTFPPSSKQQGPVMPPSFLPTSR 382

Query: 642 KRHYGPPPLN----SVSPSHSPLPTPVSRVPTSPSPSPTSASGQTELPLLPPKSSPSEPI 697
            + Y   PL     S + SH   P PV  V  +PSP+ T+ASG T++P L PK+SPS   
Sbjct: 383 HKQYAFSPLGTPDSSNNASHYRYPKPVIIVSPTPSPTQTAASGWTKMPALSPKASPS--- 439

Query: 698 RAFPPPPP----------------NADCSTTICTEPYTNTPPGSPCGCVWPMQVGLRLSV 741
             F    P                N DCSTT+CTEPYTNTPPGSPC CV PMQVGL +SV
Sbjct: 440 -GFSSRTPKMPPLPPLHTLPPPPPNEDCSTTVCTEPYTNTPPGSPCRCVLPMQVGLGVSV 498

Query: 742 ALYTFFPLVSELAGEIAAGVFMKQSQVRIIGANA-AEQPDKTVVLTDLVPLGEKFDNTTA 800
           ALYTFFPLVSELA EIAAGVFMKQ QVRIIGANA ++Q +KT+VL DLVPLGE+FDN+TA
Sbjct: 499 ALYTFFPLVSELAQEIAAGVFMKQGQVRIIGANAPSQQLEKTIVLIDLVPLGERFDNSTA 558

Query: 801 FLTYQRFWHKQVVIKSSYFGDYEVLYVRYPGLPPSPPSASSSIGIIDDGPYSG--NNGRA 858
            LTY RFW KQVVI  S+FGDYEVLYVRY GLPP PP A   I IIDDGPYSG  NN R 
Sbjct: 559 LLTYLRFWKKQVVINPSFFGDYEVLYVRYLGLPPPPPMAPFGIAIIDDGPYSGNDNNARM 618

Query: 859 TKPEGVDVPKRRQKYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQAEEVPQS 918
            KP GVDV KR++K GL+GG+IAI+ +S FVA+VL SA A  LLFK++ HA Q   V Q 
Sbjct: 619 IKPLGVDVHKRKRKDGLAGGIIAIIAVSGFVALVLFSAVALALLFKHRDHASQPASVLQP 678

Query: 919 LQTSHVKPSVV 929
           L  S VKPS +
Sbjct: 679 LPPSVVKPSGI 689

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436078|ref|XP_004135821.1| PREDICTED: receptor-like serine/threonine-protein kinase ALE2-like [Cucumis sativus] gi|449489947|ref|XP_004158466.1| PREDICTED: receptor-like serine/threonine-protein kinase ALE2-like [Cucumis sativus]

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 248/470 (52%), Positives = 293/470 (62%), Gaps = 56/470 (11%)

Query: 473 QKRNASNREAPIAEPIAPGPFPPGNSRQKSPVARPIIPGGTPTASPDPDVPPSTP--PLS 530
           ++ N S+  AP  EPI+P    P    + SPV+ P+ P   P+  P+P++ P+    P +
Sbjct: 146 EQTNTSSNVAPTPEPISPASKLP----KDSPVSHPVFPVRPPSILPEPNISPAIAISPKA 201

Query: 531 VDGKRVGKPVAEPSYDIP-MPPPVNHSPSKAPSTHKYMRHSNHSPLPPFSSPKPPQNNGN 589
            D KR+  P A P   +P    PVNHS  +APS+H + R +    LPP    K P +  N
Sbjct: 202 GDKKRLEAPAATPYNTLPKYMSPVNHSSEEAPSSHNHSRDTQPPILPP---QKAPFHRVN 258

Query: 590 DTPVSSPLASFPKHRDVRNKIASSPAPSYFISPTTSIHQGPVVPPSFIPTSRKRH----- 644
            +P S PL S  KH   +N I+ +PAPSY IS  T+   GPV+  +     R+ H     
Sbjct: 259 LSPTSPPLPSNYKHHRSKNHISHAPAPSYPISSHTTKAPGPVISTAQHSPGRRHHSPPPK 318

Query: 645 ----------YGPPPLNSVSPSHSPLPTPVSRVPTSPSPSP-TSASGQTELPLLPPKSSP 693
                     Y PPPL                V  SPSPSP    SG T     PPK+SP
Sbjct: 319 SEPSPISPLHYAPPPL---------------VVHVSPSPSPHQKISGHTRRHFYPPKASP 363

Query: 694 SEP---------IRAFPPPPPNADCSTTICTEPYTNTPPGSPCGCVWPMQVGLRLSVALY 744
           S+P         I   PPPPPN DC TT C EPYTNTPPGSPCGCVWPMQ+GLRLSV+LY
Sbjct: 364 SKPSAKSPKMSPIHTLPPPPPNEDCLTTQCIEPYTNTPPGSPCGCVWPMQIGLRLSVSLY 423

Query: 745 TFFPLVSELAGEIAAGVFMKQSQVRIIGANAA-EQPDKTVVLTDLVPLGEKFDNTTAFLT 803
           TFFPLVSELA EIA GVF+KQSQVRIIGANAA +QPDKTV+L DLVPLGEKFDNTTAFLT
Sbjct: 424 TFFPLVSELAAEIAVGVFVKQSQVRIIGANAANQQPDKTVILIDLVPLGEKFDNTTAFLT 483

Query: 804 YQRFWHKQVVIKSSYFGDYEVLYVRYPGLPPSPPSASSSIGIIDDGPY--SGNNGRATKP 861
           YQRFWHK+V IK+SYFG+YEVLYVRYPGLP SPPS  S    I++ PY  + N+ RA KP
Sbjct: 484 YQRFWHKKVSIKASYFGNYEVLYVRYPGLPQSPPSGDSG---IENEPYFSNSNDARAVKP 540

Query: 862 EGVDVPKRRQKYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQ 911
            GVDV  R+ K  LSGG+IAIV LS  VAVVLC A AW+LLFK     CQ
Sbjct: 541 IGVDVQNRQHKNKLSGGIIAIVALSTTVAVVLCVATAWILLFKRNDGLCQ 590

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545725|ref|XP_003541286.1| PREDICTED: uncharacterized protein LOC100816296 [Glycine max]

 Score =  354 bits (908), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 234/439 (53%), Positives = 284/439 (64%), Gaps = 23/439 (5%)

Query: 501 KSPVARPIIPGGTPTASPDPDVPPSTPPLSVDGKRVGKPVAEPSYDIPMP-PPVNHSPSK 559
           K P+  PI+P  +P+  P P   P TP  S + K+ G PV  P    P P P V HSP++
Sbjct: 387 KPPLVHPIVPVASPSKLPAPVSSP-TPLRSFNWKKGGAPVVAPLSRNPKPLPAVIHSPAQ 445

Query: 560 APSTHKYMRHSNHSPLPPFSSPKPPQNNGNDTPVSSPLASFPKHRDVRNKIAS-SPAPSY 618
           AP   K  R  +H+P P  SSPK   N     P  SP +SF KH   R  I S SPA S 
Sbjct: 446 APVAQK-ARQLHHAPEPLISSPKSSSNKEYHYPPLSPTSSFYKHPHTREIIGSPSPASSS 504

Query: 619 FISPTTSIHQGPVVPPSFIPTSRKRHYGPPPLNSVSPSHSP---LPTPVSRVPTSPSPSP 675
            +SP TS HQ   +PP   P S +RH+  PP+NS S        + +   +V  +PSPS 
Sbjct: 505 MVSPPTSKHQEAAIPPLLPPRSGQRHHVSPPINSSSSVSPFSSPIHSNTGQVSPAPSPSI 564

Query: 676 TSASGQTELPLLPPKSSPSEPIRAFPP------------PPPNADCSTTICTEPYTNTPP 723
             AS  T   + PPK +PSE     P             PPPN DC +T+CTEPYTN+PP
Sbjct: 565 KFASHPTGSTIFPPKVAPSESSSKRPKMPLLPQVQVLPPPPPNEDCISTVCTEPYTNSPP 624

Query: 724 GSPCGCVWPMQVGLRLSVALYTFFPLVSELAGEIAAGVFMKQSQVRIIGANAAE-QPDKT 782
           G PC CVWPM+VGLRLSV+LYTFFPLVSELA EIA GVFMKQSQVRI+GANAA+ QP+KT
Sbjct: 625 GEPCRCVWPMRVGLRLSVSLYTFFPLVSELASEIATGVFMKQSQVRIMGANAADQQPEKT 684

Query: 783 VVLTDLVPLGEKFDNTTAFLTYQRFWHKQVVIKSSYFGDYEVLYVRYPGLPPSPPSASSS 842
           VVL DLVPLGE+FDNTTAF T  RFWHK V+IK+ YFGDY+VLYV YPGLPPSPP   SS
Sbjct: 685 VVLIDLVPLGEEFDNTTAFFTSDRFWHKMVIIKAFYFGDYDVLYVSYPGLPPSPPLPPSS 744

Query: 843 IGIIDDGPYS--GNNGRATKPEGVDVPKRRQKYGLSGGMIAIVVLSAFVAVVLCSAAAWV 900
           + + + GPYS  GNNGR  KP GVD+ KR+QK GLS G+I+ + +S  +AVVLC+AAAWV
Sbjct: 745 LNMFNGGPYSTDGNNGRTIKPIGVDILKRQQKVGLSRGIISTIAVSVSLAVVLCAAAAWV 804

Query: 901 LLFKYKSHACQAEEVPQSL 919
            +FK++ H  Q+   P+ L
Sbjct: 805 -MFKFRDHVSQSASTPRQL 822

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743085|emb|CBI35952.3| unnamed protein product [Vitis vinifera]

 Score =  334 bits (857), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 212/430 (49%), Positives = 263/430 (61%), Gaps = 44/430 (10%)

Query: 516 ASPDPDVPPSTPPLSVDGKRVGKPVAEP-SYDIPMPPPVNHSPSKAPSTHKYMRHSNHSP 574
            S DP V P++  LS   K+ G   A P + +  +   + HSP++A   H  +R SN   
Sbjct: 23  GSADPAVSPTSNSLSHGRKKHGTVAAAPPNKEFHILQSMEHSPTEAHHPHHRVRLSN-IA 81

Query: 575 LPPFSSPKPPQNNGN-DTPVSSPLASFPKHRDVRNKIASS-PAPSYFISPTTSIHQGPVV 632
           +PP S P   Q   +     SSP  SF +H   RNK  +S PAPS+ +SP     QGP  
Sbjct: 82  VPPSSLPFKHQAKKHVHGSASSPTTSFYRHHHARNKFRNSAPAPSHLLSPHPYSQQGP-- 139

Query: 633 PPSFIPTSRKRHYGPPPLNSVSPSHSPLPTPVSRVPTSPSPSPTSASGQTELPLLPPKSS 692
                              SVS  HSP+P+  S    SP+PSP   S Q  +   PP  +
Sbjct: 140 -------------------SVSSFHSPVPSSTSWGSPSPAPSPAPLSRQINMHFHPPAVA 180

Query: 693 PSEP------------IRAFPPPPPNADCSTTICTEPYTNTPPGSPCGCVWPMQVGLRLS 740
           P               +   PPPPPN DC++  CTEP T TPPGSPCGCVWP+QV LRLS
Sbjct: 181 PLGSSLKNMKTPPPPLVWTLPPPPPNEDCASLTCTEPLTYTPPGSPCGCVWPIQVKLRLS 240

Query: 741 VALYTFFPLVSELAGEIAAGVFMKQSQVRIIGANAA-EQPDKTVVLTDLVPLGEKFDNTT 799
           VALYTFFPLVSELA EIAAGV +  SQVRI+GANAA +Q DKT++L DLVPLGEKF++TT
Sbjct: 241 VALYTFFPLVSELADEIAAGVSLNHSQVRIMGANAANQQLDKTIILIDLVPLGEKFNHTT 300

Query: 800 AFLTYQRFWHKQVVIKSSYFGDYEVLYVRYPGLPPSPPSASSSIGIIDDGPYS--GNNGR 857
           AF  Y++FW K+  IK+S +G YE LYVRYPGLPPSPPS+ S+   IDDG YS  GNNGR
Sbjct: 301 AFSIYEKFWLKKFFIKTSLYGGYEALYVRYPGLPPSPPSSISN---IDDGSYSGHGNNGR 357

Query: 858 ATKPEGVDVPKRRQKYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQAEEVPQ 917
             KP GVDVP+ +QK+GL G MI ++VLS+    V+C A AWVL+ K + H  QAE++P 
Sbjct: 358 VMKPLGVDVPQ-KQKHGLGGSMITVIVLSSVTGFVICIAVAWVLVLKCRGHVHQAEDIPH 416

Query: 918 SLQTSHVKPS 927
           SL +S  KPS
Sbjct: 417 SLISSFAKPS 426

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	955
TAIR|locus:504954886	1113	AT5G56890 [Arabidopsis thalian	0.216	0.185	0.588	1.2e-89
TAIR|locus:4010713767	1480	AT3G22142 "AT3G22142" [Arabido	0.276	0.178	0.363	3.7e-34
TAIR|locus:4010713902	530	AT4G22505 [Arabidopsis thalian	0.295	0.532	0.354	1.7e-33
UNIPROTKB|Q95JC9	676	Q95JC9 "Basic proline-rich pro	0.285	0.403	0.343	2.5e-33
TAIR|locus:4010713901	656	AT4G22485 "AT4G22485" [Arabido	0.284	0.414	0.326	4.7e-33
TAIR|locus:2142105	760	LRX3 "AT4G13340" [Arabidopsis	0.280	0.352	0.336	5.5e-32
TAIR|locus:2124142	857	AT4G18670 "AT4G18670" [Arabido	0.276	0.308	0.331	8e-32
TAIR|locus:2038992	744	ALE2 "Abnormal Leaf Shape 2" [	0.205	0.263	0.412	5.3e-31
TAIR|locus:2028756	762	PERK10 "proline-rich extensin-	0.249	0.312	0.372	1.4e-29
TAIR|locus:2026925	708	PERK9 "proline-rich extensin-l	0.252	0.340	0.360	1.1e-28

TAIR|locus:504954886 AT5G56890 [Arabidopsis thaliana (taxid:3702)]

 Score = 621 (223.7 bits), Expect = 1.2e-89, Sum P(3) = 1.2e-89
 Identities = 123/209 (58%), Positives = 148/209 (70%)

Query:   697 IRAFXXXXXNADCSTTICTEPYTNTPPGSPCGCVWPMQVGLRLSVALYTFFPLVSELAGE 756
             ++AF     N+DCS+TIC EPYTNTPPGSPCGCVWP+QV LRLS+ALY FFP+VSE A E
Sbjct:   446 LQAFPPPPPNSDCSSTICLEPYTNTPPGSPCGCVWPIQVELRLSMALYDFFPMVSEFARE 505

Query:   757 IAAGVFMKQSQVRIIGANAA-EQPDKTVVLTDLVPLGEKFDNTTAFLTYQRFWHKQVVIK 815
             I+AGVFMKQSQVRI+GANAA EQP+K++VL DLVPLG+KFDN TA LTYQRFW K+V I 
Sbjct:   506 ISAGVFMKQSQVRIMGANAASEQPEKSIVLIDLVPLGDKFDNMTAMLTYQRFWSKKVYID 565

Query:   816 SSYFGDYEVLYVRXXXXXXXXXXXXXXXXXXXXXXXXXNNGRATKPEGVDVPKRRQKYGL 875
                FG Y+V+YVR                         NNGRA KP GVDVP++ +K  L
Sbjct:   566 EPIFGGYDVIYVRYPGLPASPPTSGMTIIDQGPYSGN-NNGRAVKPLGVDVPRKPRKKEL 624

Query:   876 SGGMIAIVVLSAFVAVVLCSAAAWVLLFK 904
             +GG IA++VLSA   + LC    W L+F+
Sbjct:   625 NGGSIAVIVLSAAAFIGLCFVIVWFLVFR 653

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:4010713767 AT3G22142 "AT3G22142" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 3.7e-34, Sum P(3) = 3.7e-34
 Identities = 109/300 (36%), Positives = 137/300 (45%)

Query:   188 TARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPP---PAS 244
             TA PP + P   A PP + P  TA P  TA  P + P   A PP + P    PP   P  
Sbjct:   790 TATPPVATPP-IAKPPVATPPTTAPP--TATPPVAKPP-VATPPIATPPTAKPPILTPPI 845

Query:   245 HLSNTAPPPASHPYKTSPLPASHPSKTAP---PPASHPSNTAPPPASHPSKTAP---PPA 298
                  A PPA+ P  T+P PA  P  T P   PP + P    PP A+ P  T+P   PP 
Sbjct:   846 SKPPVATPPAATPPITTPPPAKPPVATPPIATPPIAKPPVATPPTATPPIATSPVAKPPV 905

Query:   299 SHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSN 358
             + P    PPPA  P   A PP + P    PP A+ P  TA PP + S    PP  + P+ 
Sbjct:   906 AIPPIKTPPPAKPP--VAIPPIATPPVAKPPVATPP--TATPPIATSPIATPPVVTPPTA 961

Query:   359 T---ALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIA 415
             T   A PP + P     P A+ P   A+PP + P    PP A+ P   A  P   P  +A
Sbjct:   962 TSPVATPPIAKPPTTTPPTATPP--VAMPPIATPPTAKPPVATPP--IANPPVEKPP-VA 1016

Query:   416 PPPLFVPVLPSALP--GKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSMPGPLPPVAQ 473
              PP+  P  P+ LP   K PV  SP + P  P ATP        P + P  P  +PP+ +
Sbjct:  1017 TPPIAKP--PTVLPPIAKPPVETSPTATP--PTATPPVAI---PPVVKP--PVAIPPITK 1067

GO:0005575 "cellular_component" evidence=ND

GO:0006869 "lipid transport" evidence=IEA

TAIR|locus:4010713902 AT4G22505 [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 1.7e-33, Sum P(3) = 1.7e-33
 Identities = 114/322 (35%), Positives = 143/322 (44%)

Query:   188 TARPPASHPSRTAPPPASHPSNTALPSKTAPS-PASHPSNTALPPASLPSKTAPPPASHL 246
             T R P + P RT  PP S      LP KT P+ P   P  +  PP S P+  +PP A  L
Sbjct:    84 TPRTPPTAPPRT--PPVSPRIPPILPPKTPPTAPPQTPPVS--PPKSPPN--SPPRAPPL 137

Query:   247 SNTAPPPASHPYKTSPL-----PASHPSKTAP-PPASHPSNTAPPPASHPSKTAPPPASH 300
             S    PP S P +  PL     P + P +  P PP   PS T+PP A   S    PP S 
Sbjct:   138 SPPRTPPTSPP-RVPPLSPPRTPPTSPPRAPPIPPPRTPS-TSPPRAPPLSPPRTPPTSP 195

Query:   301 P-SNTAPPPASHPSNT--APP--PASHPSNTAP--PPASHPSNTAPP-PASHSSKTAPPP 352
             P +   PPP + P++   APP  P   P N+ P  PP S P   APP P    S TAPP 
Sbjct:   196 PRAPPVPPPNTPPTSPPRAPPLSPPRTPPNSPPRTPPTSPPR--APPVPPPRISPTAPPR 253

Query:   353 ASHPSNTALPPASHPSNPAI-PPASHPSNTA-IPPASHPSN--TAPPHASHPSNTALTPA 408
             A   S    PP S P  P + PP + P++    PP S P    T+PP A  P +   TP 
Sbjct:   254 APPLSPPRTPPTSPPRTPPLSPPITPPTSPPRAPPLSPPRTPPTSPPRAP-PISPPRTPP 312

Query:   409 SHPSNIAP------PPLFVPVLPSALPGKAP----VSQSPISLPDAPAATPRGNFHRHSP 458
             S P    P      PP   P+ P + P ++P        P+S P +P+ TP     R  P
Sbjct:   313 SSPPRAPPMPPPRTPPTSPPLSPLSPPPRSPPMPPTRTPPVSPPTSPSRTPPVTPPRAPP 372

Query:   459 AIHPSMPGPLPPVAQKRNASNR 480
                P  P   PP+    +   R
Sbjct:   373 TAPPQTPPVSPPIVPPNSPPKR 394

GO:0006869 "lipid transport" evidence=IEA

UNIPROTKB|Q95JC9 Q95JC9 "Basic proline-rich protein" [Sus scrofa (taxid:9823)]

 Score = 373 (136.4 bits), Expect = 2.5e-33, Sum P(3) = 2.5e-33
 Identities = 98/285 (34%), Positives = 103/285 (36%)

Query:   189 ARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSN 248
             ARPP   P    PPP   P   A P    P PA  P     P    P K  PPPA     
Sbjct:   392 ARPPPGPPPPGPPPPGPAPPG-ARPPPPPPPPADEPQQGPAPSGDKPKKKPPPPAGPPPP 450

Query:   249 TAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPP 308
               P P   P    P P   P    PPP   P    PPP   P    PPP   P    PPP
Sbjct:   451 GPPSPGPAPPGARP-PPGPPPPGPPPPGPAPPGARPPPGP-PPPGPPPPGPAPPGARPPP 508

Query:   309 ASHPSNTAPPPASHPSNTAPPPASHPSNTAPP-PASHSSKT--APPPASHPSNTALPPAS 365
                P    PPP   P    PPP   P    PP PA   ++    PPP   P     PP +
Sbjct:   509 GPPPPGP-PPPGPAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPPGA 567

Query:   366 HPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLP 425
              P  P  PP   P     PP + P    PP    P   A  P + P    PPP   P  P
Sbjct:   568 RPP-PGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPA-PPGARPPPGPPPPGPPPPGP 625

Query:   426 SALPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSMPGPLPP 470
              A PG  P    P   P  P   P G   R  P   P  PGP PP
Sbjct:   626 -APPGARPPPGPPPPGPPPPGPAPPGA--RPPPGPPPPPPGPSPP 667

GO:0005576 "extracellular region" evidence=IEA

GO:0005179 "hormone activity" evidence=IEA

TAIR|locus:4010713901 AT4G22485 "AT4G22485" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 4.7e-33, Sum P(3) = 4.7e-33
 Identities = 101/309 (32%), Positives = 130/309 (42%)

Query:   191 PPASHPSRTAP--PPASHPSNTA-LPSKTAP-SPASHPSNTALPPASLPSKTAPPPASHL 246
             PP + P  T+P  PP + P+    +P  T P SP + P  T  PP + P      P   L
Sbjct:   179 PPTT-PPETSPNTPPETSPTTPPEIPPNTPPQSPPNTPPET--PPNTPPGTPPNTPPETL 235

Query:   247 SNTAPPPASHPYKTSPLPASHPSKTAP--PPASHPSNTAPP-PASHPSKTAP--PPASHP 301
              NT  PP + P      P + P +T P  PP + P NT P  P + P +T P  PP + P
Sbjct:   236 PNT--PPGTPPNTPPETPPTTPPETPPITPPET-PPNTPPQSPPNTPPETPPNTPPGT-P 291

Query:   302 SNTAP------PPASHPSNTAP--PPASHPSNTAPPPASHPSNTAPP-PASHSSKTAP-- 350
              NT P      PP + P NT P  PP + P      P   P NT P  P +   +T P  
Sbjct:   292 PNTPPETLPNTPPGT-PPNTPPETPPTTPPETPPITPPETPPNTPPQSPPNTPPETPPNT 350

Query:   351 PPASHPSNTALPPASHPSNPA-----IPPASHPSNTAIPPASHPSNTAP--PHASHPSNT 403
             PP + P+    PP + P  P       PP + P      P   P NT P  P  + P   
Sbjct:   351 PPGTPPNTPKTPPTTPPETPPNTPPETPPTTQPETPPNTPPQSPPNTPPETPPNTPPETL 410

Query:   404 ALTPASHPSNIAP--PPLFVPVLPSALPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIH 461
               TP   P N +P  PP   P  P   P + P +  P +LP  P  TP        P   
Sbjct:   411 PNTPPGTPPNQSPQIPPTLPPNTPPETPPQTPPNSPPETLPTLPPNTPPEALPNTPPQSP 470

Query:   462 PSMPGPLPP 470
             P++P   PP
Sbjct:   471 PTLPPNTPP 479

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006869 "lipid transport" evidence=IEA

TAIR|locus:2142105 LRX3 "AT4G13340" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 5.5e-32, Sum P(3) = 5.5e-32
 Identities = 99/294 (33%), Positives = 123/294 (41%)

Query:   191 PPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTA 250
             PP   P    PPP   P   + P    P P   P     PP   P  + PPP  + S   
Sbjct:   466 PPPPPPPPPPPPPVYSPPPPSPPPP--PPPVYSPPPPPPPPPPPPVYSPPPPPVYSSPPP 523

Query:   251 PP-PASHP-YKTSPLPAS-H---PSKTAPPP-------ASHPSNTAPPPASHPSKTAPPP 297
             PP PA  P Y T P P   H   P + +PPP       +  P +++PPP S P   +PPP
Sbjct:   524 PPSPAPTPVYCTRPPPPPPHSPPPPQFSPPPPEPYYYSSPPPPHSSPPPHSPPPPHSPPP 583

Query:   298 ASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPS 357
               +P  + PPP +  S+  PPP    S   PPP   P    PPP    S   PPP  H S
Sbjct:   584 PIYPYLSPPPPPTPVSS--PPPTPVYSPPPPPPCIEPP--PPPPCIEYSPPPPPPVVHYS 639

Query:   358 NTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPP 417
             +   PP  + S P  PP  + S+   PP  H S+  PP   H  +   +P  + S   PP
Sbjct:   640 SPPPPPVYYSSPP--PPPVYYSSPPPPPPVHYSSPPPPEV-HYHSPPPSPVHYSS--PPP 694

Query:   418 PLFVPVLPSALPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSMPGPLPPV 471
             P   P   S  P  APV       P    + P    H+  P   P   GPLPPV
Sbjct:   695 PPSAPCEES--PPPAPVVHHSPPPPMVHHSPPPPVIHQSPPPPSPEYEGPLPPV 746

GO:0005515 "protein binding" evidence=IPI

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2124142 AT4G18670 "AT4G18670" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 8.0e-32, Sum P(3) = 8.0e-32
 Identities = 96/290 (33%), Positives = 124/290 (42%)

Query:   188 TARPPASHPSR-TAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAP-PPASH 245
             T  P  S PS  T P P   P +    S T PSP   P + ++ P+  P  T P PP++ 
Sbjct:   487 TPTPGGSPPSSPTTPTPGGSPPS----SPTTPSPGGSPPSPSISPS--PPITVPSPPSTP 540

Query:   246 LSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTA 305
              S  +PP  S P  +SP+P S P+ + PP    P   +PP    P  T P P S PS   
Sbjct:   541 TSPGSPPSPSSPTPSSPIP-SPPTPSTPPTPISPGQNSPPIIPSPPFTGPSPPSSPSPPL 599

Query:   306 PPPASHPSNTAPPPASHPSNTAPPPASHP--SNTAPPPASHSSKTAPPPASHPSNTALPP 363
             PP    P    P P+S P +T  P  S P  S   PPP   +  + P P   P     PP
Sbjct:   600 PPVIPSPPIVGPTPSSPPPSTPTPVYSPPPPSTGYPPPPPFTGYSPPSPPPPP-----PP 654

Query:   364 ASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALT-PASHPSNIAPPPLFVP 422
                PS P+IPP    + +  PP   P    PP   +P   + + P   P    PPP  +P
Sbjct:   655 TFSPS-PSIPPPPPQTYSPFPPPPPP----PPQTYYPPQPSPSQPPQSPIYGTPPPSPIP 709

Query:   423 VLPSALPGKAPVSQSPI--SLPDAPAATPRGNFHRHSPAIHPSMPGPLPP 470
              LPS     +P   +P   S P  P   P  +    +P  H   P P PP
Sbjct:   710 YLPSPPQFASPPPPAPYYYSSPQPPPP-PHYSLPPPTPTYHYISPPP-PP 757

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2038992 ALE2 "Abnormal Leaf Shape 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 5.3e-31, Sum P(2) = 5.3e-31
 Identities = 92/223 (41%), Positives = 127/223 (56%)

Query:   708 DCSTTICTEPYTNTPPGSPCGCVWPMQVGLRLSVALYTFFPLVSELAGEIAAGVFMKQSQ 767
             DC  T C EP T+TP GSPCGCV+PM+V L LSVA ++ FP+ +EL  E+AAG +++QSQ
Sbjct:    97 DCQQT-CVEPLTSTPFGSPCGCVFPMKVQLLLSVAPFSIFPVTNELEIEVAAGTYLEQSQ 155

Query:   768 VRIIGANA-AEQPDKTVVLTDLVPLGEKFDNTTAFLTYQRFWHKQVVIKSSYFGDYEVLY 826
             V+I+GA+A +E   KTVV  +LVPLGEKFDNTTA L YQRF HK+V +  + FGDYEV +
Sbjct:   156 VKIMGASADSENQGKTVVDINLVPLGEKFDNTTATLIYQRFRHKKVPLNETVFGDYEVTH 215

Query:   827 VRXXXXXXXXXXXXXXXXXXXXXXXXXNNGRAT--KPEGVDVPKRRQKY-----GLSGGM 879
             +                           NG  T   P G+ +P     +     G+    
Sbjct:   216 I-----------------SYPGIPSSSPNGDVTGDAPGGLPIPINATTFANKSQGIGFRT 258

Query:   880 IAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQAEEVPQSLQTS 922
             IAI+ LS FV +++   A  +++ K+K     +  V  +L  S
Sbjct:   259 IAIIALSGFVLILVLVGAISIIV-KWKKIGKSSNAVGPALAPS 300

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS;IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010068 "protoderm histogenesis" evidence=IMP

GO:0042335 "cuticle development" evidence=IMP

GO:0048367 "shoot system development" evidence=IGI

GO:0048645 "organ formation" evidence=IMP

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

TAIR|locus:2028756 PERK10 "proline-rich extensin-like receptor kinase 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
 Identities = 99/266 (37%), Positives = 125/266 (46%)

Query:   191 PPASHPSRTAPPPASHPSN--TALPSKTAP-SPASHPSNTALPPASLPSKTAPPPASHLS 247
             PP   P  + PP  S PS   T  P  T P SP   PS    PP  LP++ APPPA+ +S
Sbjct:    62 PPPETPLSSPPPEPSPPSPSLTGPPPTTIPVSPPPEPS----PPPPLPTE-APPPANPVS 116

Query:   248 NTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPP 307
             +  PPP S P    P P   P  T     S P+N  PPP S PS  AP P   PSN  PP
Sbjct:   117 S--PPPESSP--PPPPPTEAPPTTPITSPSPPTNPPPPPESPPSLPAPDP---PSNPLPP 169

Query:   308 PASHPSNTAPPP--ASHPSNTAPPPASH----PSNTAPP-PASHSSKTAPPPASHPSNTA 360
             P   P + +PP    S P++  PPP  H    P++  P  P S S   +PPP  HP    
Sbjct:   170 PKLVPPSHSPPRHLPSPPASEIPPPPRHLPSPPASERPSTPPSDSEHPSPPPPGHPKRRE 229

Query:   361 LPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLF 420
              PP      P   P S PS++  P   HPS  +PP  + P     +P   PSN + PP  
Sbjct:   230 QPPPPGSKRPTPSPPS-PSDSKRPV--HPSPPSPPEETLPPPKP-SPDPLPSNSSSPPTL 285

Query:   421 VPVLPSALPGKAPVSQSPISLPDAPA 446
             +P  PS++       +  +S PD P+
Sbjct:   286 LP--PSSVVSPPSPPRKSVSGPDNPS 309

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2026925 PERK9 "proline-rich extensin-like receptor kinase 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
 Identities = 102/283 (36%), Positives = 139/283 (49%)

Query:   190 RPPASH-PSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSN 248
             +PP S+ P  T+PPP   P N A  S   P P + P    LPP++ P   APPP   ++ 
Sbjct:     7 QPPVSNSPPVTSPPP---PLNNAT-SPATPPPVTSP----LPPSAPPPNRAPPPPPPVT- 57

Query:   249 TAPPPASHPYKTSPLPASHPSKTAPPPA----SHPSNTAPPPASHPSKTAPPP-ASHPSN 303
             T+PPP ++     PLP   P  ++PPP     S P +T+PPP   P   +PPP AS P  
Sbjct:    58 TSPPPVANGAPPPPLPKP-PESSSPPPQPVIPSPPPSTSPPP--QPVIPSPPPSASPPPA 114

Query:   304 TAPP-PASHPSNTA-PPPASHPSNT----APPPASHPSNTAPPPASHSSKTAPPPASHPS 357
               PP P+S P   + PPP   PS      +PPP+  P  + PPP S     +PPP S PS
Sbjct:   115 LVPPLPSSPPPPASVPPPRPSPSPPILVRSPPPSVRPIQSPPPPPSDRPTQSPPPPSPPS 174

Query:   358 NTALPPASHPS-NPAIPPASHPSNTAIPPA--SHPSNTA------PPHASHPSNTALTPA 408
                 PP+  P+ +P  PP+  P+ +  PP+  S PS+        PP  + P     +P 
Sbjct:   175 ----PPSERPTQSPPSPPSERPTQSPPPPSPPSPPSDRPSQSPPPPPEDTKPQPPRRSPN 230

Query:   409 SHPSNIAPPPLFVPVLPSALPGKAPVSQS-PISLP--DAPAAT 448
             S P   + PP   P +   +PG    SQ+ P   P  DAP +T
Sbjct:   231 SPPPTFSSPPRSPPEI--LVPGSNNPSQNNPTLRPPLDAPNST 271

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_145000043 hypothetical protein (1156 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	955
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-24
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-21
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-17
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	6e-14
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-13
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	7e-13
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-12
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-12
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-12
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-12
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	5e-12
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-11
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-11
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	5e-11
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	5e-11
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	7e-11
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-10
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-10
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-10
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	6e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-10
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	8e-10
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	9e-10
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	1e-09
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-09
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-09
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-09
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	4e-09
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	7e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-09
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-08
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-08
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	3e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-08
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	5e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	7e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	8e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-08
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	9e-08
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-07
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-07
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-07
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-07
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-07
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	4e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	4e-07
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	4e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-07
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	7e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	7e-07
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	8e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	8e-07
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	9e-07
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-06
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-06
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	1e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-06
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	2e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	2e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	3e-06
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	3e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	4e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-06
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	4e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	5e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-06
pfam11725	1771	pfam11725, AvrE, Pathogenicity factor	8e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	9e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	9e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	9e-06
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	9e-06
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-05
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	2e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-05
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	3e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-05
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	3e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-05
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	4e-05
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	4e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	4e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	4e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	4e-05
pfam08580	626	pfam08580, KAR9, Yeast cortical protein KAR9	4e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-05
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	6e-05
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	6e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	7e-05
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	8e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	8e-05
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	9e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	9e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-04
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	1e-04
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	1e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	1e-04
PRK14949	944	PRK14949, PRK14949, DNA polymerase III subunits ga	1e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-04
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	2e-04
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	2e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	2e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	2e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	2e-04
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	2e-04
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	2e-04
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	2e-04
PTZ00395	1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	2e-04
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	2e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-04
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	3e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	3e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	3e-04
pfam03999	619	pfam03999, MAP65_ASE1, Microtubule associated prot	3e-04
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	3e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	4e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	4e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	4e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	4e-04
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	4e-04
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	4e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	6e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	6e-04
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	6e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	6e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	6e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	7e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	7e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	7e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	7e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	8e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.001
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.001
pfam04652	315	pfam04652, DUF605, Vta1 like	0.001
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.001
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.001
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.001
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.001
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.001
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.001
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.001
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	0.001
PTZ00395	1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.001
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	0.001
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.002
pfam04652	315	pfam04652, DUF605, Vta1 like	0.002
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.002
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.002
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.002
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	0.002
pfam04484	313	pfam04484, DUF566, Family of unknown function (DUF	0.002
pfam04484	313	pfam04484, DUF566, Family of unknown function (DUF	0.002
PRK12799	421	PRK12799, motB, flagellar motor protein MotB; Revi	0.002
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	0.002
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
pfam04652	315	pfam04652, DUF605, Vta1 like	0.003
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.003
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	0.003
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.003
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.003
pfam03999	619	pfam03999, MAP65_ASE1, Microtubule associated prot	0.003
pfam03999	619	pfam03999, MAP65_ASE1, Microtubule associated prot	0.003
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.003
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	0.003
pfam04388	667	pfam04388, Hamartin, Hamartin protein	0.003
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	0.003
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.004
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.004
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	0.004
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	0.004
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	0.004
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.004
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.004
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.004
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	0.004
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	0.004

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  108 bits (272), Expect = 7e-24
 Identities = 133/572 (23%), Positives = 185/572 (32%), Gaps = 54/572 (9%)

Query: 46   RLPVTFTLKPHLLGGHAPSPIELPTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTN 105
            R P      P   GG  P P   P  S   P  +P      P          P  L    
Sbjct: 2487 RFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPV--------HPRMLTWIR 2538

Query: 106  PVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSS 165
             +    S  A  P    PP +       + PPP  AP      PA +     P A P S+
Sbjct: 2539 GLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSE--PAVTSRARRPDAPPQSA 2596

Query: 166  KAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPP-PASHPSNTALPSKTAPSPASHP 224
            +   P     +   P    P     PP +H     PP P+   +           P   P
Sbjct: 2597 RPRAPVDDRGDPRGPAPPSPL----PPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERP 2652

Query: 225  SNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAP 284
             +   P      + A         ++PP         P   S  S   PPP       AP
Sbjct: 2653 RDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAP 2712

Query: 285  PPASHPSKTAPPPAS----HPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPP 340
                  +   P PA+     P+  A P           P        PP  + P   APP
Sbjct: 2713 HALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPP 2772

Query: 341  --PASHSSKTAPPPASHPSNTALPPASHPSNPAIPPAS-HPSNTAIPPASHPSNTAPPHA 397
              PA+   +    PA    + +      P +PA PPA+      A+PPA+ P+   PP  
Sbjct: 2773 AAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPP-- 2830

Query: 398  SHPSNTALTPASHPSNIAPPPLFVPVLPSALPG----KAPVSQSPISLPDAPAATPRGNF 453
                 T+  P + P    PPP  +P+  S  PG    + P S+SP + P APA  P    
Sbjct: 2831 ----PTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRL 2886

Query: 454  HRHSPAIHPSMPGPLPPVAQKRNASNREAPIAEPIAPGPFPPGNSRQKSPVARPIIPGGT 513
             R + +   +    LPP   +R    +  P  +P    P PP       P  RP      
Sbjct: 2887 ARPAVS-RSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP------ 2939

Query: 514  PTASPDPDVPPSTPPLSVDGKRVGKPVAEPSYDIPMPPPVNHSPSKAPSTHKYMRHSNHS 573
                  P + P+T P             EPS  +P P      P +     ++       
Sbjct: 2940 -----QPPLAPTTDP---------AGAGEPSGAVPQPWLGALVPGRVAVP-RFRVPQPAP 2984

Query: 574  PLPPFSSPKPPQNNGNDTPVSSPLASFPKHRD 605
                 +S  PP    + + VSS  +S   H +
Sbjct: 2985 SREAPASSTPPLTGHSLSRVSSWASSLALHEE 3016

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  100 bits (251), Expect = 2e-21
 Identities = 116/486 (23%), Positives = 152/486 (31%), Gaps = 58/486 (11%)

Query: 69   PTHSAPPPVNIPSFSPSTPAVSAPFDM--APPPSLIPTNPVASPPSITAPPPVNMAPPPS 126
            P  S PPP   P   PS PAV++      APP S  P  PV        P P +  PP  
Sbjct: 2564 PDRSVPPPRPAPR--PSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPP-- 2619

Query: 127  LIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPS 186
                T    PPP +  P  N           P   P    A    S P  A R      +
Sbjct: 2620 ---DTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL--GRAA 2674

Query: 187  NTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHP----SNTALPPASLPSKTAPPP 242
              + PP     R A P     ++ A P    P+P   P    S T LPP    ++ A P 
Sbjct: 2675 QASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPA 2734

Query: 243  ASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPS 302
                      PA       P   + P  TA PPA  P               PP      
Sbjct: 2735 LPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPA--------AGPPRRLTRP 2786

Query: 303  NTAPPPASHPSNTAPP-PASHPSNTAPPPASHPSNTAP----PPASHSSKTAPPPASHPS 357
              A    S  S  +P  PA  P+    P A+ P   +P    PP + +  TAPPP   P 
Sbjct: 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPP 2846

Query: 358  NTALP-------------------PASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHAS 398
              +LP                   PA+ P+ PA PP    +  A+  ++      P    
Sbjct: 2847 PPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPE 2906

Query: 399  HPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAATPRGNFHRHSP 458
             P      P + P     P    P  P   P   P  Q P++    PA     +     P
Sbjct: 2907 RPP----QPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQP 2962

Query: 459  AIHPSMPGPLPPVAQKRNASNREAPIAEPIAPGPFPPGNSRQKSPVARPIIPGGTPTASP 518
             +   +PG +              P   P    P           ++R      +     
Sbjct: 2963 WLGALVPGRVA-------VPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHE 3015

Query: 519  DPDVPP 524
            + D PP
Sbjct: 3016 ETDPPP 3021

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 86.5 bits (214), Expect = 5e-17
 Identities = 111/534 (20%), Positives = 137/534 (25%), Gaps = 55/534 (10%)

Query: 190  RPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNT 249
            R PA      A   A  P     P   AP   S  +   LP      +   P        
Sbjct: 2481 RRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEP-VGEPVHPRMLTWIRG 2539

Query: 250  APPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPA 309
                AS      P P       APP A  P  + PPP   P  + P   S       PP 
Sbjct: 2540 LEELASDDAGDPPPPLP---PAAPPAA--PDRSVPPPRPAPRPSEPAVTSRARRPDAPPQ 2594

Query: 310  SHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSN 369
            S            P   APP    P   AP P   S   A           +PP   P +
Sbjct: 2595 SARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRD 2654

Query: 370  PAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALP 429
               P        A         ++PP          T  S  S   PPP          P
Sbjct: 2655 DPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPP----------P 2704

Query: 430  GKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSMPG-PLPPVAQKRNASNREAPIAEPI 488
               P                        PA H  +   PLPP       ++   P A   
Sbjct: 2705 PPTP-----------------------EPAPHALVSATPLPPGPAAARQASPALPAAPAP 2741

Query: 489  APGPFPPGNSRQKSPVARPIIPGGTPTASPDPDVPPSTPPLSVDGKRVGKPVAEPSYDIP 548
               P  P      +  ARP    G P  +P        P             +  S   P
Sbjct: 2742 PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSP 2801

Query: 549  MPPPVNHSPSKAPSTHKYMRHSNHSPLPPFSSPKPPQNNGNDTPVSSPLASFPKHRDVRN 608
              P    +   AP+       S   PLPP +S           P + P    P    +  
Sbjct: 2802 WDPADPPAAVLAPAAALPPAASPAGPLPPPTSA---------QPTAPPPPPGPPPPSLPL 2852

Query: 609  KIASSPAPSYFISPTTSIHQGPVVPPSFIPTSRKRHYGPPPLNSVSPSHSPLPTPVSRVP 668
              + +P       P +   + P   P+       R    P    VS S      P  +  
Sbjct: 2853 GGSVAPGGDVRRRPPS---RSPAAKPAAPARPPVRRLARPA---VSRSTESFALPPDQPE 2906

Query: 669  TSPSPSPTSASGQTELPLLPPKSSPSEPIRAFPPPPPNADCSTTICTEPYTNTP 722
              P P           P  PP+  P  P    P PP           EP    P
Sbjct: 2907 RPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVP 2960

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 75.7 bits (186), Expect = 6e-14
 Identities = 56/209 (26%), Positives = 80/209 (38%), Gaps = 8/209 (3%)

Query: 167 AFPPASPPSNAA-RPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPS 225
           AF P      A     A+ P     P A+ P+  AP PA+ P   A P+    + A+  +
Sbjct: 362 AFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPP---AAPAAAPAAAAAARA 418

Query: 226 NTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPP 285
             A P    P+  A   A   S   P  A  P   +P PA+ P+  A P A+ P   A  
Sbjct: 419 VAAAPARRSPAPEALAAARQASARGPGGAPAP---APAPAAAPAAAARPAAAGPRPVAAA 475

Query: 286 PASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHS 345
            A+ P++ AP  A  P++  PPP          PA    + AP      S    P  +  
Sbjct: 476 AAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAES-IPDPATADP 534

Query: 346 SKTAPPPASHPSNTALPPASHPSNPAIPP 374
                  A  P+    P A+  + P + P
Sbjct: 535 DDAFETLAPAPAAAPAPRAAAATEPVVAP 563

Length = 700

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 74.1 bits (182), Expect = 2e-13
 Identities = 79/351 (22%), Positives = 125/351 (35%), Gaps = 8/351 (2%)

Query: 74  PPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSLIPTTPV 133
             P   P   P T A  A    + P   + T   ASP    +P P   + P    PT P 
Sbjct: 65  FEPPTGPPPGPGTEA-PANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPP 123

Query: 134 ASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPA 193
           ASPPP  AP L  +L         P ASP ++ A P A     A+   A+ P ++    A
Sbjct: 124 ASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETA 183

Query: 194 SHPSRTAPPPASHPSNTALPSKTAP--SPASHPSNTALPPASLPSKTAPPPASHLSNTAP 251
             PS     P       A   +     SP S  +++  P     +      +S  S+++ 
Sbjct: 184 RAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSE 243

Query: 252 PPASHPYKTSPLPASHPSKTAPPP---ASHPSNTAPPPASHPSKTAPPPASHPSNTAPPP 308
                    +  P   P+    P     +   N         S ++ P    PS +   P
Sbjct: 244 SSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSP 303

Query: 309 ASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPS 368
            S P+ ++P  +S  S++    +S  S+++      +    P P+  PS +  PP + PS
Sbjct: 304 GSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPS 363

Query: 369 NP--AIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPP 417
           +P     P+  PS+ A          A    +  +         P+    P
Sbjct: 364 SPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRP 414

Length = 1352

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 72.2 bits (177), Expect = 7e-13
 Identities = 52/224 (23%), Positives = 81/224 (36%), Gaps = 7/224 (3%)

Query: 218 PSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPAS 277
            + A+ P     P A+ P+  AP PA+  +  A  PA+     +   A+ P++ +P P +
Sbjct: 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAA--AARAVAAAPARRSPAPEA 432

Query: 278 HPSNTAPPPASHPSKTAPP--PASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPS 335
             +             AP   PA+ P+  A P A+ P   A   A+ P+  AP  A  P+
Sbjct: 433 LAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPA 492

Query: 336 NTAPPPASHSSKTAPPPASHPSNTALPPASHPS--NPAIPPASHPSNTAIPPASHPSNTA 393
           +  PPP          PA    + A       S  +PA         T  P  +      
Sbjct: 493 DDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPR 552

Query: 394 PPHASHPSNTALTPASHPSNIAPP-PLFVPVLPSALPGKAPVSQ 436
              A+ P      P +  S +        P L + LP +    Q
Sbjct: 553 AAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLPVRGLAQQ 596

Length = 700

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 72.1 bits (177), Expect = 1e-12
 Identities = 87/454 (19%), Positives = 128/454 (28%), Gaps = 28/454 (6%)

Query: 81  SFSPSTPAVSAPFDMAPPPSLIPTNPVASPPS--ITAPPPV--NMAPPPSLIPTTPVASP 136
                 P   A    A    L  +       S  + A   V    A      PT P   P
Sbjct: 16  EGGEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGP 75

Query: 137 PPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHP 196
                       P  SL    P            ASP    +  P    S    PP   P
Sbjct: 76  GTEAPANESRSTPTWSLSTLAP------------ASPAREGSPTPPGPSSPDPPPPTPPP 123

Query: 197 SRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASH 256
           +   P PA    +  L    +P P    S  A   +     +    +   +     P   
Sbjct: 124 ASPPPSPAP-DLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEET 182

Query: 257 PYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTA 316
               S  PA  P  T P  AS        P S  + +  P     +      +S  S+++
Sbjct: 183 ARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSS 242

Query: 317 PPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPAS 376
                        P   P+    P             +   N         S+ + P   
Sbjct: 243 ESSGCGWGPENECPLPRPAPITLPT--------RIWEASGWNGPSSRPGPASSSSSPRER 294

Query: 377 HPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQ 436
            PS +   P S P+ ++P  +S  S++  + +S  S+ +       V P   P ++P   
Sbjct: 295 SPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPS 354

Query: 437 SPISLPDAPAATPRGNFHRHSPAIHPSMPGPLPPVAQK---RNASNREAPIAEPIAPGPF 493
            P    D  +   R    R   +   S   P    A+      A  R+A    P      
Sbjct: 355 RPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRP 414

Query: 494 PPGNSRQKSPVARPIIPGGTPTASPDPDVPPSTP 527
            P ++   S       P  TP+  P P  PP  P
Sbjct: 415 SPLDAGAASGAFYARYPLLTPSGEPWPGSPPPPP 448

Length = 1352

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 71.1 bits (174), Expect = 2e-12
 Identities = 84/394 (21%), Positives = 109/394 (27%), Gaps = 23/394 (5%)

Query: 30   GIPPSPAIIGGHFLLPRLPVTFTLKPHLLGGHAPSPIELPTHSAPPPVNIPSFSPSTPAV 89
              P  P         P LP          G   P     P              P+ PA 
Sbjct: 2718 ATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAA 2777

Query: 90   SAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLP 149
              P  +  P     +    S PS   P     A         P ASP     PP  +  P
Sbjct: 2778 GPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP-TSAQP 2836

Query: 150  APSLIPTTPLASPLSSK-AFPPASPPSN--AARPPASHPSNTARPPASHPSRTAPPPASH 206
                 P  P    L    +  P         +R PA+ P+  ARPP    +R A   ++ 
Sbjct: 2837 TAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTE 2896

Query: 207  P-SNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPA 265
              +      +  P P + P     P    P +  PPP        PPP       +P   
Sbjct: 2897 SFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPP--------PPPPRPQPPLAPTTD 2948

Query: 266  SHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSN 325
               +         P   A  P          P   PS  AP  ++ P           S+
Sbjct: 2949 PAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRV--SS 3006

Query: 326  TAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPP 385
             A   A H   T PPP S      PP  +  S+      S      +            P
Sbjct: 3007 WASSLALH-EETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDP 3065

Query: 386  ASHPSNTAPPHASHPSNTALTPASHPSNIAPPPL 419
             +H  + A P A           S  S   PPPL
Sbjct: 3066 FAHEPDPATPEAGA-------RESPSSQFGPPPL 3092

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 71.1 bits (174), Expect = 2e-12
 Identities = 53/215 (24%), Positives = 82/215 (38%), Gaps = 4/215 (1%)

Query: 160 ASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPS 219
           A P ++ A P A P   AA P A+ P+  A P A  P+      A+  +  A P++ +P+
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAA--PAAAPAAAAAARAVAAAPARRSPA 429

Query: 220 PASHPSNTALPPASLPSKTAPP--PASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPAS 277
           P +  +             AP   PA+  +  A P A+ P   +   A+ P++ AP  A 
Sbjct: 430 PEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAP 489

Query: 278 HPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNT 337
            P++  PPP          PA    + AP      S   P  A           +  +  
Sbjct: 490 APADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAP 549

Query: 338 APPPASHSSKTAPPPASHPSNTALPPASHPSNPAI 372
           AP  A+ +     P     S + LP       PA+
Sbjct: 550 APRAAAATEPVVAPRPPRASASGLPDMFDGDWPAL 584

Length = 700

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 70.1 bits (172), Expect = 3e-12
 Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 9/136 (6%)

Query: 230 PPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASH 289
           P A+  +       +     A  PA+ P       A+ P+  A P A+  +  APP A+ 
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAP---VAQAAAAPAPAAAPAAAASAPAAPPAAAP 422

Query: 290 PSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTA 349
           P+  A P A+ P        +          + P+  AP   + P   AP PA  S+  A
Sbjct: 423 PAPVAAPAAAAP----AAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASA--A 476

Query: 350 PPPASHPSNTALPPAS 365
           P PA+ P+   L P  
Sbjct: 477 PAPAAAPAAARLTPTE 492

Length = 618

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 69.9 bits (171), Expect = 5e-12
 Identities = 64/329 (19%), Positives = 94/329 (28%), Gaps = 17/329 (5%)

Query: 129 PTTPVASPPPITAPPLV-NVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSN 187
           P       P    P  V   +PAP       + +               A  P A+  + 
Sbjct: 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAA 419

Query: 188 TARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLS 247
             R  A  P     PPA+           AP PA   +  +           PP  S  +
Sbjct: 420 ATRAEA--PPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSA 477

Query: 248 NTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPP 307
           +     A       P P    +             A  PA+   + AP  A+ P+  A P
Sbjct: 478 SAPASDAPPDAAFEPAP---RAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARP 534

Query: 308 PASHPSNTAPPPASHPS--------NTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNT 359
           P   P+  AP   +  +        N     +S     A   A  ++  A  P       
Sbjct: 535 PT--PAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRV 592

Query: 360 ALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPL 419
           A+   +  +  A   A          A+      PP    P +  +  ++      P   
Sbjct: 593 AVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPPWEDIPPDDYVPLSADEGFGGPDDG 652

Query: 420 FVPVLPSALPGKAPVSQSPISLPDAPAAT 448
           FVPV  S  P    V+  P   P  P  T
Sbjct: 653 FVPVFDSG-PDDVRVAPKPADAPAPPVDT 680

Length = 830

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 67.7 bits (166), Expect = 2e-11
 Identities = 41/205 (20%), Positives = 59/205 (28%), Gaps = 5/205 (2%)

Query: 171 ASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALP 230
             P   AA         ++ PP        P   + P+  A P+    + A   ++ A  
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAA---RPAAPAAPAAPAAPAPAGAAAAPAEASAAPA 644

Query: 231 PASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHP 290
           P     +  P   +    +              PA+ P     P A      A P    P
Sbjct: 645 PGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAA-PPPAPAPAAPAAPAGAAPAQPAP 703

Query: 291 SKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAP 350
           +  A PPA    + A  P       + P  +   +  P P        P  A       P
Sbjct: 704 APAATPPAGQADDPAAQPPQAAQGASAPSPA-ADDPVPLPPEPDDPPDPAGAPAQPPPPP 762

Query: 351 PPASHPSNTALPPASHPSNPAIPPA 375
            PA   +  A PP S PS       
Sbjct: 763 APAPAAAPAAAPPPSPPSEEEEMAE 787

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 67.3 bits (165), Expect = 2e-11
 Identities = 58/217 (26%), Positives = 74/217 (34%), Gaps = 12/217 (5%)

Query: 155 PTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPS 214
           P    A      A   + PP  AARP A  P+  A P A  P+  A  PA   +  A   
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAA--PAAPAAPAAPAPAGAAAAPAEASAAPA--- 644

Query: 215 KTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPP 274
               +P  HP + A+P AS      P  A   +  APPPA  P       A      A P
Sbjct: 645 PGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAP------AAPAAPAGAAP 698

Query: 275 PASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASH-PSNTAPPPASH 333
               P+  A PPA      A  P       + P  +       PP    P + A  PA  
Sbjct: 699 AQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQP 758

Query: 334 PSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNP 370
           P   AP PA+  +   PP             +   + 
Sbjct: 759 PPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDD 795

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 66.4 bits (162), Expect = 5e-11
 Identities = 46/195 (23%), Positives = 68/195 (34%), Gaps = 6/195 (3%)

Query: 295 PPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPAS 354
              A+ P     P A+ P+  AP PA+ P+  A  PA+     A   A+  ++ +P P +
Sbjct: 375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAA--AARAVAAAPARRSPAPEA 432

Query: 355 HPSNTALPPASHPSNPAIP--PASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPS 412
             +            PA    PA+ P+  A P A+ P   A   A+ P+  A   A  P+
Sbjct: 433 LAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPA 492

Query: 413 NIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSMPGPLPPVA 472
           +  PPP     LP      AP             + P         A     P P    A
Sbjct: 493 DDDPPPW--EELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPA 550

Query: 473 QKRNASNREAPIAEP 487
            +  A+        P
Sbjct: 551 PRAAAATEPVVAPRP 565

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 66.1 bits (161), Expect = 5e-11
 Identities = 54/211 (25%), Positives = 71/211 (33%), Gaps = 7/211 (3%)

Query: 96  APPPSLIPTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIP 155
           A P +          P+  AP     AP P+  P  P A+P    A   V   PA     
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAA--APAPAAPPAAPAAAPAAAAAARAVAAAPARRSPA 429

Query: 156 TTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSK 215
              LA+   + A  P   P+ A  P A+ P+  ARP A+ P   A   A+ P+  A  + 
Sbjct: 430 PEALAAARQASARGPGGAPAPAPAPAAA-PAAAARPAAAGPRPVAAAAAAAPARAAPAAA 488

Query: 216 TAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPP 275
            AP+    P    LPP    S     P +  +         P    P  A      AP  
Sbjct: 489 PAPADDDPPPWEELPPE-FASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAA 547

Query: 276 ASHPSNTAPPPASHPSKTAPPPASHPSNTAP 306
           A  P   A      P     PP +  S    
Sbjct: 548 APAPRAAAATE---PVVAPRPPRASASGLPD 575

Length = 700

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 66.2 bits (161), Expect = 7e-11
 Identities = 84/333 (25%), Positives = 107/333 (32%), Gaps = 13/333 (3%)

Query: 74  PPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPP---PSLIPT 130
            P    P    S P++      +P P L P       P   AP   +       P     
Sbjct: 217 QPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMP 276

Query: 131 TPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPAS-PPSNAARPPASHPSNTA 189
             +   P     P  N      L  +     PL S+A P +  PPS +A  P   P    
Sbjct: 277 HALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQP 336

Query: 190 RPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNT 249
            PPA       PPP +        S   P     PS     P++LP   A  P S L   
Sbjct: 337 LPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTH 396

Query: 250 APPPA-SHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPP--PASHPSNTAP 306
            PP A   P +  P      S  A PP    S + PP AS    +     P   P    P
Sbjct: 397 HPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHP 456

Query: 307 PPASHPSNTAPPPASHPSNTAPPPASHPSNTAP-----PPASHSSKTAPPPASHPSNTAL 361
             +       PPP+   S  A PP +   +  P          +    P P        L
Sbjct: 457 FTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPL 516

Query: 362 PPASHPSNPAIPPAS-HPSNTAIPPASHPSNTA 393
             A  P +P  PP S  P  T +   SH S +A
Sbjct: 517 DEAEEPESPPPPPRSPSPEPTVVNTPSHASQSA 549

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 64.5 bits (157), Expect = 2e-10
 Identities = 44/220 (20%), Positives = 66/220 (30%), Gaps = 3/220 (1%)

Query: 248 NTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPP 307
              P  A+      P PA+     A P  + P        +  +  A   A+ P+  +P 
Sbjct: 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPA-AAAAARAVAAAPARRSPA 429

Query: 308 PASHPSNTAPPPASHPSNTAPP--PASHPSNTAPPPASHSSKTAPPPASHPSNTALPPAS 365
           P +  +             AP   PA+ P+  A P A+     A   A+ P+  A   A 
Sbjct: 430 PEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAP 489

Query: 366 HPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLP 425
            P++   PP          PA    + AP      S      A                P
Sbjct: 490 APADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAP 549

Query: 426 SALPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSMP 465
           +     A         P A A+     F    PA+   +P
Sbjct: 550 APRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 64.2 bits (157), Expect = 2e-10
 Identities = 41/192 (21%), Positives = 56/192 (29%), Gaps = 2/192 (1%)

Query: 199 TAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTA-PPPASHLSNTAPPPASHP 257
            AP  A      A  S   P  A+ P+  A P A      A    A   ++ AP P    
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAA 649

Query: 258 YKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAP 317
            +  P   + P  +              PA+ P     P A      A P    P+  A 
Sbjct: 650 PEHHPKHVAVPDASDGGDGWPAKAGGAAPAA-PPPAPAPAAPAAPAGAAPAQPAPAPAAT 708

Query: 318 PPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASH 377
           PPA    + A  P       + P  +       PP            + P  P  P  + 
Sbjct: 709 PPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAA 768

Query: 378 PSNTAIPPASHP 389
               A PP+   
Sbjct: 769 APAAAPPPSPPS 780

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 63.6 bits (155), Expect = 3e-10
 Identities = 39/136 (28%), Positives = 54/136 (39%), Gaps = 8/136 (5%)

Query: 276 ASHPSNTAPPPASHPSKT-APPPASHPSNT-APPPASHPSNTAPPPASHPSNTAPPPASH 333
           A  P+  A   A    KT A P A+ P+       A+ P+  A P A+  +  APP A+ 
Sbjct: 363 AFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAP 422

Query: 334 PSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTA 393
           P+  A P A      AP  A   +  A+  A  P   A P          P     ++ A
Sbjct: 423 PAPVAAPAA-----AAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPE-PAVASAA 476

Query: 394 PPHASHPSNTALTPAS 409
           P  A+ P+   LTP  
Sbjct: 477 PAPAAAPAAARLTPTE 492

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 63.6 bits (155), Expect = 3e-10
 Identities = 34/140 (24%), Positives = 52/140 (37%), Gaps = 10/140 (7%)

Query: 204 ASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPL 263
           A  P+  A  +  A          A P A+  ++ A  PA      A P A+     +P 
Sbjct: 363 AFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPA----AAPAAAASAPAAPP 418

Query: 264 PASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHP 323
            A+ P+  A P A+ P        +          + P+  AP   + P   AP PA   
Sbjct: 419 AAAPPAPVAAPAAAAP----AAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPA--V 472

Query: 324 SNTAPPPASHPSNTAPPPAS 343
           ++ AP PA+ P+     P  
Sbjct: 473 ASAAPAPAAAPAAARLTPTE 492

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 63.5 bits (155), Expect = 4e-10
 Identities = 49/211 (23%), Positives = 69/211 (32%), Gaps = 5/211 (2%)

Query: 239 APPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPA 298
            P P +      P PAS          + P+  A P A  P+  A  PA   +  AP  A
Sbjct: 589 GPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVA 648

Query: 299 SHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSN 358
           +      P   + P  +              PA+ P   AP   +  +  AP   +    
Sbjct: 649 APE--HHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706

Query: 359 TALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPP 418
              P        A PP +    +A  PA+      PP    P + A  PA  P   AP P
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766

Query: 419 LFVPVLPSALPGKAPVSQSPISLPDAPAATP 449
                 P+A P  +P S+      D   +  
Sbjct: 767 ---AAAPAAAPPPSPPSEEEEMAEDDAPSMD 794

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 63.5 bits (155), Expect = 4e-10
 Identities = 39/193 (20%), Positives = 57/193 (29%), Gaps = 7/193 (3%)

Query: 216 TAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPP 275
            AP  A      A   +  P + A P A      AP   + P       A   +  AP P
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAP----AAPAAPAAPAPAGAAAAPAEASAAPAP 645

Query: 276 ASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPS 335
                   P   + P  +              PA+ P     P A      A P    P+
Sbjct: 646 GVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAA-PPPAPAPAAPAAPAGAAPAQPAPA 704

Query: 336 NTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPP 395
             A PPA  +   A  P       + P  +  ++  +P    P +   P  +      PP
Sbjct: 705 PAATPPAGQADDPAAQPPQAAQGASAPSPA--ADDPVPLPPEPDDPPDPAGAPAQPPPPP 762

Query: 396 HASHPSNTALTPA 408
             +  +  A  P 
Sbjct: 763 APAPAAAPAAAPP 775

Length = 824

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 63.2 bits (153), Expect = 6e-10
 Identities = 64/281 (22%), Positives = 89/281 (31%), Gaps = 15/281 (5%)

Query: 104 TNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPL 163
           T PVA   + T       AP   +  T PVAS     A P V   P P      P+ +P 
Sbjct: 317 TEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAP- 375

Query: 164 SSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASH 223
           + + +P  S  +  A           +P   + +  A  PA  P     P + A  P   
Sbjct: 376 APEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYA 435

Query: 224 PSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLP-ASHPSKTAPPPASHPSNT 282
           P+     P +  +  A    S     AP       +T   P A  P    P P       
Sbjct: 436 PAPE--QPVAGNAWQAEEQQSTF---APQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVV 490

Query: 283 APPPASHPSKTAPPPASHPSNTAPPPASHPSNTA------PPPASHPSNTAPPPASHPSN 336
            P P    +K A PP  +        A      A      P P   P          PS 
Sbjct: 491 EPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPE-PIKSSLKAPSV 549

Query: 337 TAPPPASHSSKTAPPPASHPSNT-ALPPASHPSNPAIPPAS 376
            A PP   ++  +P  +     T A   A+  + P    A+
Sbjct: 550 AAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLAN 590

Length = 1355

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 62.7 bits (153), Expect = 7e-10
 Identities = 48/211 (22%), Positives = 65/211 (30%), Gaps = 11/211 (5%)

Query: 133 VASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPP 192
           V  P P  A       PA S  P                + P+  A P  +  +      
Sbjct: 587 VVGPAPGAAGGEGPPAPASSGPPEEAARPA-------APAAPAAPAAPAPAGAAAAPAEA 639

Query: 193 ASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPP 252
           ++ P+     P  HP + A+P  +              PA+ P     P A      A P
Sbjct: 640 SAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAA-PPPAPAPAAPAAPAGAAP 698

Query: 253 PASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASH-PSNTAPPPASH 311
               P   +  PA      A  P       + P  +       PP    P + A  PA  
Sbjct: 699 AQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQP 758

Query: 312 PSNTAPPPASHPSNTAPPPASHPSNTAPPPA 342
           P   AP PA+ P+  A PP S PS       
Sbjct: 759 PPPPAPAPAAAPA--AAPPPSPPSEEEEMAE 787

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 62.4 bits (152), Expect = 8e-10
 Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 9/136 (6%)

Query: 252 PPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASH 311
           P A+          +     A  PA+ P       A+ P+  A P A+  +  APP A+ 
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAP---VAQAAAAPAPAAAPAAAASAPAAPPAAAP 422

Query: 312 PSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPA 371
           P+  A P A+ P        +          +  ++ AP   + P   A  PA   ++ A
Sbjct: 423 PAPVAAPAAAAP----AAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPA--VASAA 476

Query: 372 IPPASHPSNTAIPPAS 387
             PA+ P+   + P  
Sbjct: 477 PAPAAAPAAARLTPTE 492

Length = 618

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 62.4 bits (151), Expect = 9e-10
 Identities = 85/384 (22%), Positives = 115/384 (29%), Gaps = 29/384 (7%)

Query: 62  APSPIELPTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNM 121
             +         P    +P       A  AP    P P  + + P   P  + +P P   
Sbjct: 186 GAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQ 245

Query: 122 APPPSLIPTTPVASPPPITAPPLVNVLPA-PSLIPTTPLASPLSSKAFPPASPPSNAARP 180
               S     P A              P  P  +   P+             P SN  +P
Sbjct: 246 PQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQ---------HPSSNPPQP 296

Query: 181 PASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAP 240
                S     P         P  + P +   PS++A  P   P    LPPA       P
Sbjct: 297 FGLAQSQVPPLPL--------PSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKP 348

Query: 241 PPASHLSNTAPPPASHP-YKTSPLP-ASHPSKTAPPPASHPSNTAP---PPASHPSKTAP 295
           PP + +         HP +   P P    PS   PPPA  P ++ P   PP++HP     
Sbjct: 349 PPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQL 408

Query: 296 PPASHPSNTAP--PPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPA 353
            P S P  + P  PP    S + PP AS      P    H      P A H   +   PA
Sbjct: 409 MPQSQPLQSVPAQPPVLTQSQSLPPKAST----HPHSGLHSGPPQSPFAQHPFTSGGLPA 464

Query: 354 SHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSN 413
             P  +           A   +  P +             P          L  A  P +
Sbjct: 465 IGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPES 524

Query: 414 IAPPPLFVPVLPSALPGKAPVSQS 437
             PPP      P+ +   +  SQS
Sbjct: 525 PPPPPRSPSPEPTVVNTPSHASQS 548

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 62.0 bits (150), Expect = 1e-09
 Identities = 87/358 (24%), Positives = 120/358 (33%), Gaps = 31/358 (8%)

Query: 96  APPPSLIPTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIP 155
           A    L P  P +      A    +  PP       P    P    P      P+P  + 
Sbjct: 168 AQQQLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLI 227

Query: 156 TTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSK 215
           + P   P    +  P   P  A++     P+ ++R P S      PP         +P  
Sbjct: 228 SAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPP---------MPHA 278

Query: 216 TAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAP-P 274
               P      ++ PP       +  P   L + A P +  P   S L    P +  P P
Sbjct: 279 LQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLP 338

Query: 275 PASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHP 334
           PA    +  PPP +   +       HP +   P          P    PSN  PPPA  P
Sbjct: 339 PAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGP---------SPFPQMPSNLPPPPALKP 389

Query: 335 SNTAPPPASHSSKTAPPPASHPSNTALPPASHP--SNPAIPPASHPSNTAIPPASHPSNT 392
            ++ P        T  PP++HP    L P S P  S PA PP    S +  P AS   ++
Sbjct: 390 LSSLP--------THHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHS 441

Query: 393 APPHASHPSNTALTP--ASHPSNIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAAT 448
                   S  A  P  +     I PPP      P+A P  +  SQ P S   +    
Sbjct: 442 GLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGC 499

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 61.3 bits (149), Expect = 2e-09
 Identities = 34/145 (23%), Positives = 55/145 (37%), Gaps = 15/145 (10%)

Query: 177 AARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPS 236
           A +P A+  +       +     A  PA+ P             A+ P+  A P A+  +
Sbjct: 363 AFKPAAAAEAAAPAEKKTPARPEAAAPAAAP---------VAQAAAAPAPAAAPAAAASA 413

Query: 237 KTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPP 296
             APP A+  +  A P A+ P        +          + P+  AP   + P + AP 
Sbjct: 414 PAAPPAAAPPAPVAAPAAAAP----AAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPE 469

Query: 297 PASHPSNTAPPPASHPSNTAPPPAS 321
           PA   ++ AP PA+ P+     P  
Sbjct: 470 PA--VASAAPAPAAAPAAARLTPTE 492

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 60.5 bits (147), Expect = 2e-09
 Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 15/143 (10%)

Query: 190 RPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNT 249
           +P A+  +  A P              A +PA+ P       A+ P+  A P A+  +  
Sbjct: 365 KPAAAAEA--AAPAEKKTPARP----EAAAPAAAP---VAQAAAAPAPAAAPAAAASAPA 415

Query: 250 APPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPA 309
           APP A+ P   +   A+ P        +          + P++ AP   + P   AP PA
Sbjct: 416 APPAAAPPAPVAAPAAAAP----AAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPA 471

Query: 310 SHPSNTAPPPASHPSNTAPPPAS 332
              ++ AP PA+ P+     P  
Sbjct: 472 --VASAAPAPAAAPAAARLTPTE 492

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 61.5 bits (150), Expect = 2e-09
 Identities = 43/202 (21%), Positives = 62/202 (30%), Gaps = 9/202 (4%)

Query: 185 PSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPAS 244
           P+  A      P+  +  P    +  A P+  A   A  P+  A  PA   +  AP  A+
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAA 649

Query: 245 HLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNT 304
                 P   + P  +              PA+ P     P A      A P    P+  
Sbjct: 650 --PEHHPKHVAVPDASDGGDGWPAKAGGAAPAA-PPPAPAPAAPAAPAGAAPAQPAPAPA 706

Query: 305 APPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPA 364
           A PPA    + A  P       + P  +       PP         PP    +    PP 
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPD-----DPPDPAGAPAQPPPP 761

Query: 365 SHPSNPAIPPASHPSNTAIPPA 386
             P+  A  PA+ P  +     
Sbjct: 762 PAPAPAA-APAAAPPPSPPSEE 782

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 60.8 bits (148), Expect = 3e-09
 Identities = 43/221 (19%), Positives = 59/221 (26%), Gaps = 17/221 (7%)

Query: 272 APPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPA 331
            P P +      P PAS          + P+  A P A  P+  A  PA   +  AP  A
Sbjct: 589 GPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVA 648

Query: 332 SHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSN 391
           +      P   +    +              PA+ P     P A      A P    P+ 
Sbjct: 649 APE--HHPKHVAVPDASDGGDGWPAKAGGAAPAA-PPPAPAPAAPAAPAGAAPAQPAPAP 705

Query: 392 TAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAATPRG 451
            A P A    + A  P       + P               P +  P+ LP  P   P  
Sbjct: 706 AATPPAGQADDPAAQPPQAAQGASAPS--------------PAADDPVPLPPEPDDPPDP 751

Query: 452 NFHRHSPAIHPSMPGPLPPVAQKRNASNREAPIAEPIAPGP 492
                 P   P+      P A    +   E           
Sbjct: 752 AGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPS 792

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 60.4 bits (147), Expect = 3e-09
 Identities = 40/227 (17%), Positives = 54/227 (23%), Gaps = 22/227 (9%)

Query: 104 TNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPL 163
             P A+       P  +  P  +  P  P A   P    P                A   
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAP-----------AGAAAAPAE 638

Query: 164 SSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASH 223
           +S A  P            + P  +              PA+       P       A  
Sbjct: 639 ASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAA-------PPPAPAPAAPA 691

Query: 224 PSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTA 283
               A P    P+  A PPA    + A  P       S    +       PP        
Sbjct: 692 APAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDD---- 747

Query: 284 PPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPP 330
           PP  +      PPP +     AP  A  PS  +        +     
Sbjct: 748 PPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMD 794

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 60.3 bits (146), Expect = 4e-09
 Identities = 54/235 (22%), Positives = 73/235 (31%), Gaps = 25/235 (10%)

Query: 53  LKPHLLGGHA--PSPIELPTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASP 110
            +P   GG A   +    P     P    P+ +   PA       A P +      VA+ 
Sbjct: 363 FRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAA 422

Query: 111 PSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPP 170
           P+  +P P  +A         P  +P P  AP      PA +              A P 
Sbjct: 423 PARRSPAPEALAAARQASARGPGGAPAPAPAPAAA---PAAA--------------ARPA 465

Query: 171 ASPPSNAARPPASHPSNTARPPASHPSRTAPPPASH-PSNTALPSKTAPSPASHPSNTAL 229
           A+ P   A   A+ P+  A   A  P+   PPP    P   A P+   P  A        
Sbjct: 466 AAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAES 525

Query: 230 PPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAP 284
            P   P+   P  A      AP  A  P   +      P     PP +  S    
Sbjct: 526 IPD--PATADPDDAFETLAPAPAAAPAPRAAAATE---PVVAPRPPRASASGLPD 575

Length = 700

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 60.2 bits (146), Expect = 4e-09
 Identities = 47/263 (17%), Positives = 58/263 (22%), Gaps = 31/263 (11%)

Query: 167 AFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSN 226
           A         + +     P  +    AS      P     PS      K  P P   P +
Sbjct: 84  APSVGPDSDLSQKTSTFSPCQS-GYEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQAPES 142

Query: 227 TALPPA------------------SLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHP 268
              P                        +   PP   L    PP  +   +  P     P
Sbjct: 143 QPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQ--P 200

Query: 269 SKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAP 328
                PP  HP    P         AP     P      P   P    P          P
Sbjct: 201 PGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLP---PQLPQQPPPLQQPQFPGLSQQMPP 257

Query: 329 PPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASH 388
           PP   P     PP       A PP  +   T  P      N  +PP   P    +     
Sbjct: 258 PPPQPPQQQQQPPQP----QAQPPPQNQ-PTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQ 312

Query: 389 PSNTAPPHASHPSNTALTPASHP 411
                P          L+     
Sbjct: 313 GQQRGPQF--REQLVQLSQQQRE 333

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 59.3 bits (144), Expect = 7e-09
 Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 8/132 (6%)

Query: 247 SNTAPPPASHPYKTSPLPASHPSKTAPPPASH--PSNTAPPPASHPSKTAPPPASHPSNT 304
           +  A   A    KT   P +     AP   +   P+  A P A+  +  APP A+ P+  
Sbjct: 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPV 426

Query: 305 APPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPA 364
           A P A+ P        +          + P+  AP   +   + AP PA   ++ A  PA
Sbjct: 427 AAPAAAAP----AAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPA--VASAAPAPA 480

Query: 365 SHPSNPAIPPAS 376
           + P+   + P  
Sbjct: 481 AAPAAARLTPTE 492

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 59.2 bits (144), Expect = 8e-09
 Identities = 41/202 (20%), Positives = 57/202 (28%), Gaps = 4/202 (1%)

Query: 250 APPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPA 309
            P P +   +  P PAS          + P+  A P A  P+      A   ++ AP P 
Sbjct: 589 GPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPA--GAAAAPAEASAAPAPG 646

Query: 310 SHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSN 369
                  P   + P  +              PA+       P A      A P    P+ 
Sbjct: 647 VAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAA-PPPAPAPAAPAAPAGAAPAQPAPAP 705

Query: 370 PAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPV-LPSAL 428
            A PPA    + A  P       + P  +      L P              P   P+  
Sbjct: 706 AATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPA 765

Query: 429 PGKAPVSQSPISLPDAPAATPR 450
           P  AP +  P S P        
Sbjct: 766 PAAAPAAAPPPSPPSEEEEMAE 787

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 59.0 bits (143), Expect = 1e-08
 Identities = 88/449 (19%), Positives = 131/449 (29%), Gaps = 29/449 (6%)

Query: 284 PPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPAS 343
           P P + P   A    S         ++  +       +   +   PP   P        +
Sbjct: 22  PRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPA 81

Query: 344 HSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNT 403
           + S++ P  +      A P       P  P +  P     PP   P++  P  A   S  
Sbjct: 82  NESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDP----PPPTPPPASPPPSPAPDLSEM 137

Query: 404 ALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPS 463
                S     A  P      P+A+   A  S+       +P  T R           PS
Sbjct: 138 LRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARA----------PS 187

Query: 464 MPGPLPPVAQKRNASNREAPIAEPIAPGPFPPGNSRQKSPVARPIIPGGTPTASPDPDVP 523
            P   PP        +     A P  P    P ++   SP   P         +   D  
Sbjct: 188 SPPAEPPP-------STPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSS 240

Query: 524 PSTPPLSVDGKRVGKPVAEPSYDIPMPPPVNHSPSKAPSTHKYMRHSNHSPLPPFSSPKP 583
            S       G     P+  P+           S    PS+      S+ SP     SP P
Sbjct: 241 SSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSP--RERSPSP 298

Query: 584 PQNNGNDTPVSSPLASFPKHRDVRNKIASSPAPSYFISPTTSIHQGPVVPPSFIPTSRKR 643
             ++    P  S   +       R   +SS + S   S   ++  GP    S  P+    
Sbjct: 299 SPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSR--- 355

Query: 644 HYGPPPLNSVSPSHSPLPTPVSRVPTSPSPSPTSASGQTELPLLPPKSSPSEPIRAFPPP 703
              PPP +  SP   P P+     P + +  PT    +  +     +   +    A  P 
Sbjct: 356 --PPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPR 413

Query: 704 PPNADCSTTICTEPYTNTPPGSPCGCVWP 732
           P   D         Y   P  +P G  WP
Sbjct: 414 PSPLDAGAA-SGAFYARYPLLTPSGEPWP 441

Length = 1352

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 58.2 bits (141), Expect = 2e-08
 Identities = 36/144 (25%), Positives = 56/144 (38%), Gaps = 18/144 (12%)

Query: 124 PPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPAS 183
           P +       A       P               P A+P++      A+ P+ AA P A+
Sbjct: 366 PAAAAEAAAPAEKKTPARPE-----------AAAPAAAPVA----QAAAAPAPAAAPAAA 410

Query: 184 HPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALP-PASLPSKTAPPP 242
             +  A P A+ P+  A P A+ P+     +  A + A  P   A P   ++P + AP P
Sbjct: 411 ASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEP 470

Query: 243 ASHLSNTAPPPASHPYKTSPLPAS 266
           A   ++ AP PA+ P      P  
Sbjct: 471 AV--ASAAPAPAAAPAAARLTPTE 492

Length = 618

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 57.6 bits (139), Expect = 3e-08
 Identities = 51/281 (18%), Positives = 78/281 (27%), Gaps = 19/281 (6%)

Query: 177 AARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPS 236
           A  P  +          +  +   P P +  +     S      A           +  +
Sbjct: 357 AFEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAV-----TGAAGAALA 411

Query: 237 KTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPP 296
             A   A+     APP A  P  T+          AP PA   +  +           PP
Sbjct: 412 PKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPP 471

Query: 297 PASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHP 356
             S  ++     A   +   P P    +             A  PA+ S + AP  A+ P
Sbjct: 472 ADSGSASAPASDAPPDAAFEPAP---RAAAPSAATPAAVPDARAPAAASREDAPAAAAPP 528

Query: 357 SNTALPPASHPSNPAIPPASHPS------NTAIPPASHPSNTAPPHASHPSNTALTPASH 410
           +  A PP    + PA       +      N  +  +S     A   A   +  A  P   
Sbjct: 529 APEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKP- 587

Query: 411 PSNIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAATPRG 451
               A P + V V           +    +     AA  RG
Sbjct: 588 ----AAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRG 624

Length = 830

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 57.8 bits (139), Expect = 3e-08
 Identities = 96/407 (23%), Positives = 122/407 (29%), Gaps = 30/407 (7%)

Query: 201 PPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKT 260
           PP    P   AL     P   S  +               P      +    P+ HP + 
Sbjct: 178 PPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRL 237

Query: 261 SPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPA 320
                    +TA   +  P   +            PP  H     P    HPS+  P P 
Sbjct: 238 PSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPF 297

Query: 321 SHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSN 380
               +  PP    PS   P   +  S++A  P   P    LPPA     P++P    P  
Sbjct: 298 GLAQSQVPPLPL-PSQAQPHSHTPPSQSALQPQQPPREQPLPPA-----PSMPHIKPPPT 351

Query: 381 TAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQSPIS 440
           T IP   + S+  PPH   PS         PSN+ PPP   P+  S+LP   P S  P  
Sbjct: 352 TPIPQLPNQSHKHPPHLQGPSPF----PQMPSNLPPPPALKPL--SSLPTHHPPSAHPPP 405

Query: 441 LPDAPAATPRGNFHRHSPAIHPSMPGPLPPVAQKRNASNREAPIAEPIAPGPFPPGNSRQ 500
           L   P + P  +     P +  S   P                      P         Q
Sbjct: 406 LQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTH----------------PHSGLHSGPPQ 449

Query: 501 KSPVARPIIPGGTPTASPDPDVPPSTPPLSVDGKRVGKPVAEPSYDIP--MPPPVNHSPS 558
                 P   GG P   P P +P STP          +P             P     P 
Sbjct: 450 SPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPI 509

Query: 559 KAPSTHKYMRHSNHSPLPPFSSPKPPQNNGNDTPVSSPLASFPKHRD 605
           +             SP PP  SP P     N    +S  A F KH D
Sbjct: 510 QIKEEPLDEAEEPESPPPPPRSPSPEPTVVNTPSHASQSARFYKHLD 556

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 56.2 bits (136), Expect = 3e-08
 Identities = 30/126 (23%), Positives = 43/126 (34%)

Query: 230 PPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASH 289
            P     +         +N+           +    S P  ++P   S PS    P +  
Sbjct: 149 NPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPS 208

Query: 290 PSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTA 349
            S   P P+S  S+T PP    P+N +PPP        P     P +TA P    +S T 
Sbjct: 209 DSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATP 268

Query: 350 PPPASH 355
            P    
Sbjct: 269 APIGGI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 56.2 bits (136), Expect = 3e-08
 Identities = 31/134 (23%), Positives = 43/134 (32%)

Query: 238 TAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPP 297
             P P   L             +        +  A    S P +++P   S PS    P 
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205

Query: 298 ASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPS 357
           +   S+  P P+S  S+T PP    P+N +PPP        P        TA P     S
Sbjct: 206 SPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSAS 265

Query: 358 NTALPPASHPSNPA 371
            T  P      +  
Sbjct: 266 ATPAPIGGITLDDD 279

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 57.2 bits (139), Expect = 3e-08
 Identities = 33/148 (22%), Positives = 49/148 (33%), Gaps = 6/148 (4%)

Query: 265 ASHPSKTAPPPASHPSNTAPPPAS--HPSKTAPPPASHPSNTAPPPASHPSNTAPPPASH 322
           A HP+   P P   P + AP  ++    + TA           PPPAS P      P   
Sbjct: 358 AFHPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPE 417

Query: 323 PSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPP-ASHPSNPAIPPASHPSNT 381
            ++                 +  S+ A    + P N+AL   AS    P+    +     
Sbjct: 418 TTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKE 477

Query: 382 AIP-PASHPSNTAPPHASHPSNTALTPA 408
           A    A++P        + P   AL  A
Sbjct: 478 AYRWKATNPVEVKKEPVATPK--ALKKA 503

Length = 647

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 55.5 bits (134), Expect = 5e-08
 Identities = 30/129 (23%), Positives = 45/129 (34%)

Query: 249 TAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPP 308
             P P     +         + +        ++ A    S P  ++P   S PS    P 
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205

Query: 309 ASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPS 368
           +   S+  P P+S  S+T PP    P+N +PPP   +    P     P +TA P     S
Sbjct: 206 SPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSAS 265

Query: 369 NPAIPPASH 377
               P    
Sbjct: 266 ATPAPIGGI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 56.3 bits (136), Expect = 7e-08
 Identities = 68/370 (18%), Positives = 113/370 (30%), Gaps = 11/370 (2%)

Query: 159 LASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAP 218
           L   + + A      P   A P  +     +       S +A   A      A       
Sbjct: 7   LYDLIEAAAEGGEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFE 66

Query: 219 SPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASH 278
            P   P        +  S++ P  +      A P            +  P    PPPAS 
Sbjct: 67  PPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASP 126

Query: 279 PSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTA 338
           P  +  P  S   +    P   P+ + P   + P+  A   AS      P  +   +  A
Sbjct: 127 PP-SPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARA 185

Query: 339 PPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHAS 398
           P         + PPA+       P     S+P    AS P+      A+  +  +   +S
Sbjct: 186 PSSPPAEPPPSTPPAAAS-----PRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSS 240

Query: 399 HPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAATPRGNFHRHSP 458
              ++            P P  + +             S    P + +++PR      SP
Sbjct: 241 SSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRER----SP 296

Query: 459 AIHPSMPGPLPPVAQKRNASNREAPIAEPIAPGPFPPGNSRQKSPVARPIIPGGTPTASP 518
           +  PS PG  P  +  R +S+      E  +        S + + V+    P  +P+ S 
Sbjct: 297 SPSPSSPGSGPAPSSPRASSSSS-SSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSR 355

Query: 519 DPDVPPSTPP 528
            P     + P
Sbjct: 356 PPPPADPSSP 365

Length = 1352

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.9 bits (135), Expect = 8e-08
 Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 13/139 (9%)

Query: 151 PSLIPTTPLASPLSSKAFPPASPPSNAARP-PASHPSNTARPPASHPSRTAPPPASHPSN 209
           P+        +   + A P A+ P+ A     A+ P+  A P A+  +  APP A+ P+ 
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAP 425

Query: 210 TALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPS 269
            A P+  AP+ A   +  A+  A  P   A          AP   + P + +P PA   +
Sbjct: 426 VAAPAAAAPAAAPAAAPAAVALAPAPPAQA----------APETVAIPVRVAPEPA--VA 473

Query: 270 KTAPPPASHPSNTAPPPAS 288
             AP PA+ P+     P  
Sbjct: 474 SAAPAPAAAPAAARLTPTE 492

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 56.1 bits (136), Expect = 8e-08
 Identities = 81/439 (18%), Positives = 117/439 (26%), Gaps = 52/439 (11%)

Query: 271 TAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPP 330
              P A+ PS  A  PA+ P+  A  PA+  +             AP PA  P+    PP
Sbjct: 391 AGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAA--------APQPAPAPAPAPAPP 442

Query: 331 ASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPS 390
           +   +  A    S     AP     P+  A P  +    PA P A         PA+ P+
Sbjct: 443 SPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAP-------APAAAPA 495

Query: 391 NTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAATPR 450
             A P A   ++ A T       I            A   K       I LP+A     R
Sbjct: 496 APAAPAAPAGADDAATLRERWPEI-----------LAAVPKRSRKTWAILLPEATVLGVR 544

Query: 451 GN----FHRHSPAIHPSMPGPLPPVAQKRNASNREAPIAEP----------IAPGPFPPG 496
           G+                       A   NA      +AE           + P P   G
Sbjct: 545 GDTLVLGFSTGGLAR--------RFASPGNAEVLVTALAEELGGDWQVEAVVGPAPGAAG 596

Query: 497 NSRQKSPVAR-PIIPGGTPTASPDPDVPPSTPPLSVDGKRVGKPVAEPSYDIPMPPPVNH 555
                +P +  P      P A   P  P +  P            A             H
Sbjct: 597 GEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKH 656

Query: 556 SPSKAPSTHKYMRHSNHSPLPPFSSPKPPQNNGNDTPVSSPLASFPKHRDVRNKIASSPA 615
                 S       +      P + P  P       P  +  A              +  
Sbjct: 657 VAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADD 716

Query: 616 PSYFISPTTSIHQGPVVPPSFIPTSRKRHYGPPPLNSVSPSHSPLPTPVSRVPTSPSPSP 675
           P+   +      QG   P             P      + + +  P P +  P +   + 
Sbjct: 717 PA---AQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAA 773

Query: 676 TSASGQTELPLLPPKSSPS 694
              S  +E   +    +PS
Sbjct: 774 PPPSPPSEEEEMAEDDAPS 792

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.5 bits (134), Expect = 9e-08
 Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 4/128 (3%)

Query: 296 PPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASH 355
           P A+  +       +     A  PA+ P       A+ P+  A P A+ S+  APP A+ 
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAP---VAQAAAAPAPAAAPAAAASAPAAPPAAAP 422

Query: 356 PSNTALPPASHPSN-PAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNI 414
           P+  A P A+ P+  PA  PA+     A P  + P   A P    P     + A  P+  
Sbjct: 423 PAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAA 482

Query: 415 APPPLFVP 422
                  P
Sbjct: 483 PAAARLTP 490

Length = 618

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.7 bits (134), Expect = 1e-07
 Identities = 41/211 (19%), Positives = 64/211 (30%), Gaps = 10/211 (4%)

Query: 330 PASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHP 389
           P        P  A+ +    P PA+     A P  + P       A   +  A   A+ P
Sbjct: 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAP-AAAPAAAAAARAVAAAP 423

Query: 390 SNTAPPHASHPSNTALTPASHPSNIAPPPLFVPV------LPSALPGKAPVSQSPISLPD 443
           +  +P   +  +    +        AP P             +A P     + +      
Sbjct: 424 ARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARA 483

Query: 444 APAATPRGNFHRHSPAIHPSMPGPLPPVAQKRNASNREAPIAEPIA-PGPFPPGNSRQKS 502
           APAA P        P     +P      A  +  +     +AE I  P    P ++ +  
Sbjct: 484 APAAAPAPADDDPPP--WEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETL 541

Query: 503 PVARPIIPGGTPTASPDPDVPPSTPPLSVDG 533
             A    P     A+ +P V P  P  S  G
Sbjct: 542 APAPAAAPAPRAAAATEPVVAPRPPRASASG 572

Length = 700

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 51/266 (19%), Positives = 79/266 (29%), Gaps = 25/266 (9%)

Query: 109 SPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAF 168
             P    P  V  A P              + A   V      +L P    A+  +    
Sbjct: 366 GAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEA 425

Query: 169 PPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTA 228
           PPA+P   A        ++   P  +  +  A   +      A P       AS P++ A
Sbjct: 426 PPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPP-ADSGSASAPASDA 484

Query: 229 LPPA----SLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAP 284
            P A    +  +             A  PA+   + +P  A+ P+  A PP   P+  AP
Sbjct: 485 PPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPT--PAAAAP 542

Query: 285 PPASHPSKTA----------------PPPASHPSNTAPPPASHPSNTAPPPASHPSNTAP 328
              +  +  A                   A+     A P A+            P+  A 
Sbjct: 543 AARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRAR 602

Query: 329 PPASH--PSNTAPPPASHSSKTAPPP 352
                  P+  A    +  S+ APPP
Sbjct: 603 AATGDAPPNGAARAEQAAESRGAPPP 628

Length = 830

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 29/129 (22%), Positives = 43/129 (33%)

Query: 282 TAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPP 341
             P P     +         +N+        ++ A    S P +++P   S PS    P 
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205

Query: 342 ASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPS 401
           +   S   P P+S  S+T  P    P+NP+ PP              P +TA P     S
Sbjct: 206 SPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSAS 265

Query: 402 NTALTPASH 410
            T       
Sbjct: 266 ATPAPIGGI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 31/117 (26%), Positives = 41/117 (35%), Gaps = 4/117 (3%)

Query: 228 ALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPA 287
            +   +  +      A   S +   P S     SP   S PS    P +   S+  P P+
Sbjct: 162 DVATTNSDNSFPGEDADPASASPSDPPSS----SPGVPSFPSPPEDPSSPSDSSLPPAPS 217

Query: 288 SHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASH 344
           S  S T PP    P+N +PPP        P     P +TA P     S T  P    
Sbjct: 218 SFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 55.7 bits (135), Expect = 1e-07
 Identities = 21/92 (22%), Positives = 34/92 (36%)

Query: 252 PPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASH 311
            P+   +     P S  + TA   A+  + +AP  A      A P  + P+  AP     
Sbjct: 26  DPSWREFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPK 85

Query: 312 PSNTAPPPASHPSNTAPPPASHPSNTAPPPAS 343
           P+  A   A+  +  A   A+ P+  A     
Sbjct: 86  PAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117

Length = 1228

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 54.0 bits (130), Expect = 3e-07
 Identities = 76/375 (20%), Positives = 117/375 (31%), Gaps = 19/375 (5%)

Query: 190 RPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNT 249
            P        A       S   L S +A   A      A         T PPP       
Sbjct: 21  FPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPP----GPG 76

Query: 250 APPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPA 309
              PA+    T     S  +  +P     P+   P     P  T PPPAS P  +  P  
Sbjct: 77  TEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPT-PPPASPPP-SPAPDL 134

Query: 310 SHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSN 369
           S        P   P+ + P   + P+  A   AS      P  +   +  A         
Sbjct: 135 SEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPP 194

Query: 370 PAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALP 429
           P+ PPA+         +   ++ + P  +   + A    +  S+ +          S+  
Sbjct: 195 PSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSS-------ESSGC 247

Query: 430 GKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSMPGPLPPVAQKRNASNREAPIAEPIA 489
           G  P ++ P+  P AP   P     R   A   + P   P  A   ++    +P   P +
Sbjct: 248 GWGPENECPLPRP-APITLPT----RIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSS 302

Query: 490 PGPFPPGNSRQKSPVARPIIPGGTPTASPDPDVP-PSTPPLSVDGKRVGKPVAEPSYDIP 548
           PG  P  +S + S  +       + + S   +    +         R   P   P    P
Sbjct: 303 PGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADP 362

Query: 549 MPPPVNHSPSKAPST 563
             P     PS+APS+
Sbjct: 363 SSPRKRPRPSRAPSS 377

Length = 1352

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 27/127 (21%), Positives = 41/127 (32%)

Query: 207 PSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPAS 266
           P+      +         +N+        +  A    S   +++P   S P       + 
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 267 HPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNT 326
             S   P P+S  S+T PP    P+  +PPP        P     P +TA P     S T
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267

Query: 327 APPPASH 333
             P    
Sbjct: 268 PAPIGGI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 30/129 (23%), Positives = 43/129 (33%)

Query: 271 TAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPP 330
             P P               + +        ++ A    S P +++P   S PS    P 
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205

Query: 331 ASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPS 390
           +   S+  P P+S  S T PP    P+N + PP      P       P +TA P     S
Sbjct: 206 SPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSAS 265

Query: 391 NTAPPHASH 399
            T  P    
Sbjct: 266 ATPAPIGGI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 54.1 bits (131), Expect = 3e-07
 Identities = 32/172 (18%), Positives = 49/172 (28%), Gaps = 15/172 (8%)

Query: 182 ASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPP 241
           A HP+     P   P   AP  ++  +     +   P   + P   A  P   P+   P 
Sbjct: 358 AFHPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPE 417

Query: 242 PASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHP 301
             S L                   +  +K + P A+    +   P +   +        P
Sbjct: 418 TTSQLLAARQQLQRA-------QGATKAKKSEPAAA----SRARPVNSALERLASVRPAP 466

Query: 302 SNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPA 353
           S     PA          A++P      P + P   A   A    KT    A
Sbjct: 467 SALEKAPAK--KEAYRWKATNPVEVKKEPVATPK--ALKKALEHEKTPELAA 514

Length = 647

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.6 bits (129), Expect = 4e-07
 Identities = 29/140 (20%), Positives = 42/140 (30%), Gaps = 7/140 (5%)

Query: 106 PVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSS 165
           P A+  +         A P       P A+P    A          +       A+P ++
Sbjct: 366 PAAAAEAAAPAEKKTPARPE---AAAPAAAPVAQAAAAPAPAAAPAAAAS--APAAPPAA 420

Query: 166 KAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPS 225
               P + P+ AA   A   +  A   A  P   A P          P     S A  P+
Sbjct: 421 APPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPA 480

Query: 226 NTALPPASLPSKTAPPPASH 245
             A P A+  + T      H
Sbjct: 481 --AAPAAARLTPTEEGDVWH 498

Length = 618

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 54.1 bits (130), Expect = 4e-07
 Identities = 54/238 (22%), Positives = 75/238 (31%), Gaps = 16/238 (6%)

Query: 62  APSPIELPTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNM 121
           A      P  +A          P+ PA  A  D     +     PV +  +  A      
Sbjct: 405 AAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDA-PVPAKANARASADSRC 463

Query: 122 APPPSLIPTTPV-ASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARP 180
               +  P     AS P   APP     PAP     +         A  PA+     A  
Sbjct: 464 DERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPA 523

Query: 181 PASHPSNTARPPASHPSRTAPPPASHPSNTALPS-KTAPSPASHPSNTALPPASLPSKTA 239
            A+ P+  ARPP   P+  AP   +  +  AL   + A    S  S+     A+     A
Sbjct: 524 AAAPPAPEARPPT--PAAAAPAARAGGAAAALDVLRNAGMRVS--SDRGARAAAAAKPAA 579

Query: 240 PPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPP 297
            P A        P A        +    P   A    + P+  A    +  S+ APPP
Sbjct: 580 APAA-----APKPAAPRV----AVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPP 628

Length = 830

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 52.8 bits (127), Expect = 4e-07
 Identities = 29/133 (21%), Positives = 43/133 (32%), Gaps = 2/133 (1%)

Query: 262 PLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPAS 321
           P P     +         +N+        +  A    S P +++P   S PS    P + 
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 322 HPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNT 381
             S+   PPA     +  PP S  S T P P   P+    PP       +    + PS +
Sbjct: 208 SDSS--LPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSAS 265

Query: 382 AIPPASHPSNTAP 394
           A P          
Sbjct: 266 ATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.7 bits (130), Expect = 4e-07
 Identities = 31/162 (19%), Positives = 45/162 (27%), Gaps = 6/162 (3%)

Query: 82  FSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITA 141
           F P+ P         PP       P AS  +  AP      P    +P  P ++P    A
Sbjct: 359 FHPAAPLPEPE---VPPQ---SAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPA 412

Query: 142 PPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAP 201
            PL                +  ++KA       ++ ARP  S     A    +  +    
Sbjct: 413 VPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKA 472

Query: 202 PPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPA 243
           P           +          +  AL  A    KT    A
Sbjct: 473 PAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAA 514

Length = 647

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.1 bits (128), Expect = 7e-07
 Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 3/115 (2%)

Query: 264 PASHPSKTAPPPASHPSNTAPPPASHPSKT---APPPASHPSNTAPPPASHPSNTAPPPA 320
            A+ PS  A  PA+ P+  A  PA+  +     AP PA  P+    PP+   +  A    
Sbjct: 395 AAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAP 454

Query: 321 SHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPA 375
           S P   AP     P+  A P  + +   APP A  P+     PA+  +      A
Sbjct: 455 SPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDA 509

Length = 824

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 53.2 bits (127), Expect = 7e-07
 Identities = 46/252 (18%), Positives = 61/252 (24%), Gaps = 5/252 (1%)

Query: 103 PTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLI-PTTPLAS 161
           P  PV   P + +       P  +  P     +  P+ AP             P      
Sbjct: 336 PVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNE 395

Query: 162 PLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPA 221
           PL     P     + AA  PA  P     P          P    P              
Sbjct: 396 PLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQST 455

Query: 222 SHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSN 281
             P +T     +     A  P        P P        P P    +K A PP  +   
Sbjct: 456 FAPQSTYQTEQTYQQPAAQEPLYQ----QPQPVEQQPVVEPEPVVEETKPARPPLYYFEE 511

Query: 282 TAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPP 341
                A    + A      P     P     S  AP  A+ P   A    S  ++     
Sbjct: 512 VEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKA 571

Query: 342 ASHSSKTAPPPA 353
              +   A   A
Sbjct: 572 TLATGAAATVAA 583

Length = 1355

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 52.0 bits (125), Expect = 7e-07
 Identities = 31/133 (23%), Positives = 42/133 (31%), Gaps = 4/133 (3%)

Query: 190 RPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNT 249
             P   P        +  + T   +      A   S +   P S    ++P   S  S  
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPS----SSPGVPSFPSPP 201

Query: 250 APPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPA 309
             P +       P P+S  S T PP    P+N +PPP        P     P +TA P  
Sbjct: 202 EDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTP 261

Query: 310 SHPSNTAPPPASH 322
              S T  P    
Sbjct: 262 PSASATPAPIGGI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 52.8 bits (127), Expect = 8e-07
 Identities = 41/269 (15%), Positives = 52/269 (19%), Gaps = 29/269 (10%)

Query: 191 PPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTA 250
                   +       P  +   + T P                       P   L  TA
Sbjct: 86  SVGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQ----------------PDPSLWGTA 129

Query: 251 PPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPAS 310
           P P   P +         +      +               +   PP        PP  +
Sbjct: 130 PKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQA 189

Query: 311 HPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNP 370
                 PP    P     PP  HP    P     +   AP     P      P   P   
Sbjct: 190 AFPQQGPPEQ--PPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQ---LPQQPPPLQ 244

Query: 371 AIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALPG 430
                       +PP   P    P     P      P         P           P 
Sbjct: 245 QPQFPGLSQQ--MPP---PPPQPPQQQQQPPQPQAQPPPQNQPTPHPG---LPQGQNAPL 296

Query: 431 KAPVSQSPISLPDAPAATPRGNFHRHSPA 459
             P     + L   P    RG   R    
Sbjct: 297 PPPQQPQLLPLVQQPQGQQRGPQFREQLV 325

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.0 bits (128), Expect = 8e-07
 Identities = 21/82 (25%), Positives = 34/82 (41%)

Query: 286 PASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHS 345
           P S  + TA   A+  + +AP  A      A P  + P+  AP     P+  A   A+ +
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 346 SKTAPPPASHPSNTALPPASHP 367
           +  A   A+ P+  A+     P
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 51.7 bits (124), Expect = 9e-07
 Identities = 30/147 (20%), Positives = 36/147 (24%), Gaps = 1/147 (0%)

Query: 85  STPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPL 144
            +     P+D +P     P   +  P     P     A P          +  P   PP 
Sbjct: 41  QSGVAEFPWDPSPQAPP-PVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPA 99

Query: 145 VNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPA 204
              LPA    PT             P     N A  P   P+             AP   
Sbjct: 100 TFALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASG 159

Query: 205 SHPSNTALPSKTAPSPASHPSNTALPP 231
             PS      K   S      N   PP
Sbjct: 160 QLPSQQQSAQKNDESQLQQQPNGETPP 186

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.0 bits (125), Expect = 1e-06
 Identities = 30/127 (23%), Positives = 46/127 (36%), Gaps = 6/127 (4%)

Query: 324 SNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAI 383
           +  A  PA   +   P  A+ ++      A+ P+  A P A+  +  A P A+ P     
Sbjct: 369 AAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPP----- 423

Query: 384 PPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQSPISLPD 443
            P + P+  AP  A   +  A+  A  P      P  V +     P  A  S +P     
Sbjct: 424 APVAAPAAAAPAAAPAAAPAAVALAPAPP-AQAAPETVAIPVRVAPEPAVASAAPAPAAA 482

Query: 444 APAATPR 450
             AA   
Sbjct: 483 PAAARLT 489

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.0 bits (125), Expect = 1e-06
 Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 16/136 (11%)

Query: 165 SKAFPPASPPSNAARP-PASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASH 223
           + A      P+      PA+ P       A+ P+  A P A+  +  A P+   P+P + 
Sbjct: 372 AAAPAEKKTPARPEAAAPAAAP---VAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVA- 427

Query: 224 PSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTA 283
               A   A+  +  A  PA+          + P + +P   + P + AP PA   ++ A
Sbjct: 428 ----APAAAAPAAAPAAAPAA-----VALAPAPPAQAAPETVAIPVRVAPEPA--VASAA 476

Query: 284 PPPASHPSKTAPPPAS 299
           P PA+ P+     P  
Sbjct: 477 PAPAAAPAAARLTPTE 492

Length = 618

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.5 bits (126), Expect = 1e-06
 Identities = 52/265 (19%), Positives = 77/265 (29%), Gaps = 25/265 (9%)

Query: 73  APPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSLIPTTP 132
           AP      +   S          A   +L P    A+  +    PP   APP +      
Sbjct: 382 APGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDD 441

Query: 133 VASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPP 192
            A              PA +    +  +      A PPA   S +A P +  P + A  P
Sbjct: 442 AADGDAPV--------PAKANARASADSRCDERDAQPPADSGSASA-PASDAPPDAAFEP 492

Query: 193 ASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTA-- 250
           A   +             A        PA+     A   A+ P+  A PP    +  A  
Sbjct: 493 AP-RAAAPSAATPAAVPDARA------PAAASREDAPAAAAPPAPEARPPTPAAAAPAAR 545

Query: 251 ---PPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPP 307
                 A    + + +  S         A+ P+  A P A+            P+  A  
Sbjct: 546 AGGAAAALDVLRNAGMRVSSDRGARAAAAAKPA--AAPAAAPKPAAPRVAVQVPTPRARA 603

Query: 308 PASH--PSNTAPPPASHPSNTAPPP 330
                 P+  A    +  S  APPP
Sbjct: 604 ATGDAPPNGAARAEQAAESRGAPPP 628

Length = 830

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.2 bits (126), Expect = 1e-06
 Identities = 29/147 (19%), Positives = 42/147 (28%), Gaps = 7/147 (4%)

Query: 287 ASHPSKTAPPPASHPSNTAPPPAS----HPSNTAPPPASHPSNTAPPPASHPSNTAPPPA 342
           A HP+   P P   P + AP  ++     P+    PP        PPPAS P      P 
Sbjct: 358 AFHPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQ--APAVPPPPASAPQQAPAVPL 415

Query: 343 SHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSN 402
             ++                  +  S PA    + P N+A+   +            P  
Sbjct: 416 PETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAP-A 474

Query: 403 TALTPASHPSNIAPPPLFVPVLPSALP 429
                    +N           P AL 
Sbjct: 475 KKEAYRWKATNPVEVKKEPVATPKALK 501

Length = 647

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.2 bits (126), Expect = 1e-06
 Identities = 37/180 (20%), Positives = 57/180 (31%), Gaps = 12/180 (6%)

Query: 298 ASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPS 357
           A HP+   P P   P + AP  ++  +       + P   A P         PPPAS P 
Sbjct: 358 AFHPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVP---------PPPASAPQ 408

Query: 358 NTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPP 417
                P    ++  +              +  S  A    + P N+AL   +        
Sbjct: 409 QAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSA 468

Query: 418 PLFVPVLPSALPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSMPGPLPPVAQKRNA 477
               P    A   KA    +P+ +   P ATP+           P +   L   A +R+ 
Sbjct: 469 LEKAPAKKEAYRWKA---TNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEAIERDP 525

Length = 647

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.8 bits (125), Expect = 1e-06
 Identities = 32/167 (19%), Positives = 51/167 (30%), Gaps = 14/167 (8%)

Query: 155 PTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPS 214
           P  PL  P      PP S    A+    + P+    PP +      P  A      A+P 
Sbjct: 361 PAAPLPEPEV----PPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAP-QQAPAVPL 415

Query: 215 KTAPSPASHPSNTAL-PPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAP 273
               S              +  +K + P A+    +   P +   +   L +  P+ +A 
Sbjct: 416 PETTSQLLAARQQLQRAQGATKAKKSEPAAA----SRARPVNSALE--RLASVRPAPSAL 469

Query: 274 PPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPA 320
             A          A++P +    P + P   A   A     T    A
Sbjct: 470 EKAPAKKEAYRWKATNPVEVKKEPVATPK--ALKKALEHEKTPELAA 514

Length = 647

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 51.7 bits (124), Expect = 1e-06
 Identities = 38/195 (19%), Positives = 52/195 (26%), Gaps = 13/195 (6%)

Query: 200 APPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYK 259
             PP  H   T+ P    P    +       P +       P    L      PA   Y+
Sbjct: 95  PAPPPPHARRTSEPELPRPGRRPYEGYGG--PRADDRPPGLPRQDQLPT--ARPAYPAYQ 150

Query: 260 TSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPP- 318
             P P + P               PP A + S  +  P         P  +         
Sbjct: 151 QRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAP--EQERDREPYDAGRPEYDQRR 208

Query: 319 -PASHPSNTAPPPASHPSNT--APPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPA 375
               HP      P    ++    PP A H  +  P P        +P    PS P  P A
Sbjct: 209 RDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIR--PSAPG-PLA 265

Query: 376 SHPSNTAIPPASHPS 390
           + P+    P      
Sbjct: 266 AQPAPAPGPGEPTAR 280

Length = 617

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.3 bits (123), Expect = 2e-06
 Identities = 27/128 (21%), Positives = 41/128 (32%), Gaps = 3/128 (2%)

Query: 69  PTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPP--PVNMAPPPS 126
           P  +A         +P+ P  +AP       +     P A+P +  + P  P   APP  
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAP 425

Query: 127 LIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPS 186
           +      A      A P    L         P    +  +  P  +  S AA  PA+ P+
Sbjct: 426 VAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVAS-AAPAPAAAPA 484

Query: 187 NTARPPAS 194
                P  
Sbjct: 485 AARLTPTE 492

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.5 bits (124), Expect = 2e-06
 Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 2/125 (1%)

Query: 229 LPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPAS 288
           +   +     A P A+  +  A P  +     +    +  +  AP PA  P+    PP+ 
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAA--APQPAPAPAPAPAPPSP 444

Query: 289 HPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKT 348
             +  A    S P   AP     P+  A P  +     APP A  P+     PA+ ++  
Sbjct: 445 AGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPA 504

Query: 349 APPPA 353
               A
Sbjct: 505 GADDA 509

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.5 bits (124), Expect = 2e-06
 Identities = 53/211 (25%), Positives = 68/211 (32%), Gaps = 9/211 (4%)

Query: 88  AVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNV 147
           AV  P   A      P    + PP   A P    AP     P    A+  P  A      
Sbjct: 586 AVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAP 645

Query: 148 LPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHP 207
             A        +A P +S         +  A P A  P+     PA+        PA  P
Sbjct: 646 GVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP 705

Query: 208 SNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASH 267
           +         P         A PP +    +AP PA+      PP    P   +  PA  
Sbjct: 706 A-------ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQP 758

Query: 268 PSKTAPPPASHPSNTAPPPASHPSKTAPPPA 298
           P   AP PA+ P+  A PP S PS+      
Sbjct: 759 PPPPAPAPAAAPA--AAPPPSPPSEEEEMAE 787

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 51.8 bits (125), Expect = 2e-06
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 275 PASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHP 334
           P S  + TA   A+  + +AP         AP   +  +    PPA+      P PA+  
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAA-------APAAKAPAAPAPAPPAAAAPAAPPKPAAAA 90

Query: 335 SNTAPPPASHSSKTAPPPAS 354
           +  A P A  ++  A  PA+
Sbjct: 91  AAAAAPAAPPAAAAAAAPAA 110

Length = 1228

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 38/179 (21%), Positives = 49/179 (27%), Gaps = 20/179 (11%)

Query: 279 PSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTA 338
           PS  APPP       A  P   P    P  A      A     H + T  P A+ P+  A
Sbjct: 51  PSPQAPPP------VAQLPQPLP-QPPPTQALQAL-PAGDQQQHNTPTGSPAANPPATFA 102

Query: 339 PPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHAS 398
            P           P        +P      NPA  P   P+             AP    
Sbjct: 103 LPAGPAGPTIQTEP-GQLYPVQVPVMVT-QNPANSPLDQPAQQRALQQLQQRYGAPASGQ 160

Query: 399 HPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAATPRGNFHRHS 457
            PS       +  S +   P           G+ P  Q+  +  D   A  R      +
Sbjct: 161 LPSQQQSAQKNDESQLQQQP----------NGETPPQQTDGAGDDESEALVRLREADGT 209

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 51.5 bits (124), Expect = 2e-06
 Identities = 25/109 (22%), Positives = 35/109 (32%), Gaps = 3/109 (2%)

Query: 263 LPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASH 322
           L  S  +  APP A+ P+   PPPA+ P+  + P A   +  AP    H           
Sbjct: 43  LADSDLAALAPPAAAAPAAAQPPPAAAPAAVSRPAA-PAAEPAPWLVEHAKRLTAQREQL 101

Query: 323 PSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPA 371
            +  A P A      AP   +  +             A  P       A
Sbjct: 102 VARAAAPAAPEA--QAPAAPAERAAAENAARRLARAAAAAPRPRVPADA 148

Length = 484

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 51.0 bits (123), Expect = 3e-06
 Identities = 18/81 (22%), Positives = 29/81 (35%)

Query: 294 APPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPA 353
               A   +  A   A+     AP   +  +    PPA+      P PA+ ++  A P A
Sbjct: 39  GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAA 98

Query: 354 SHPSNTALPPASHPSNPAIPP 374
              +  A  PA+      + P
Sbjct: 99  PPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 50.3 bits (121), Expect = 3e-06
 Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 6/120 (5%)

Query: 242 PASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHP 301
             S L+  APP A+ P    P PA+ P+  + P A   +  AP    H  +         
Sbjct: 44  ADSDLAALAPPAAAAPAAAQPPPAAAPAAVSRPAA-PAAEPAPWLVEHAKRLTAQREQLV 102

Query: 302 SNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTAL 361
           +  A P A      AP   +  +                 A+   +     A+  ++   
Sbjct: 103 ARAAAPAAPEA--QAPAAPAERAAAENAARRLA---RAAAAAPRPRVPADAAAAVADAVK 157

Length = 484

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 50.7 bits (121), Expect = 3e-06
 Identities = 57/248 (22%), Positives = 88/248 (35%), Gaps = 17/248 (6%)

Query: 78  NIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPP 137
            IPS         A     P P+   T    SPP    PP      P  L P T      
Sbjct: 322 KIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLK 381

Query: 138 PITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNT--ARPPASH 195
           P T+P           IPT P +SP SSK+    + P+     P+   ++      PA  
Sbjct: 382 PPTSP-----------IPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQV 430

Query: 196 PSRTAPP--PASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPP 253
            ++   P  P +   +   P+  +P+  +  S +    +S+P+     PA+  ++ A PP
Sbjct: 431 EAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPP 490

Query: 254 ASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPS 313
            ++    SP       K  PP +  P+      A   +       +    TA     H +
Sbjct: 491 PANMRPLSPYAVYDDLK--PPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHA 548

Query: 314 NTAPPPAS 321
              P P S
Sbjct: 549 QPKPRPLS 556

Length = 576

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.4 bits (121), Expect = 4e-06
 Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 8/127 (6%)

Query: 216 TAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPP 275
                A+ PS  A  PA+ P+  A  PA+     AP PA+     +P PA  P+    PP
Sbjct: 391 AGAPAAAAPSAAAAAPAAAPAPAAAAPAAA---AAPAPAA-----APQPAPAPAPAPAPP 442

Query: 276 ASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPS 335
           +   +  A    S P   AP     P+  A P  +     APP A  P+     PA+  +
Sbjct: 443 SPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAA 502

Query: 336 NTAPPPA 342
                 A
Sbjct: 503 PAGADDA 509

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.2 bits (121), Expect = 4e-06
 Identities = 30/144 (20%), Positives = 45/144 (31%), Gaps = 3/144 (2%)

Query: 221 ASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPS 280
           A HP+   LP   +P ++A P AS  +  AP  A  P +   +P    S     PA    
Sbjct: 358 AFHPA-APLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLP 416

Query: 281 NTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPP 340
            T     +   +      +  +  + P A   S   P  ++     +  PA      AP 
Sbjct: 417 ETTSQLLAARQQLQRAQGATKAKKSEPAA--ASRARPVNSALERLASVRPAPSALEKAPA 474

Query: 341 PASHSSKTAPPPASHPSNTALPPA 364
                   A  P          P 
Sbjct: 475 KKEAYRWKATNPVEVKKEPVATPK 498

Length = 647

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 50.7 bits (122), Expect = 4e-06
 Identities = 19/82 (23%), Positives = 31/82 (37%)

Query: 231 PASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHP 290
           P S  + TA   A+  + +AP  A      +    + P+  AP     P+  A   A+  
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 291 SKTAPPPASHPSNTAPPPASHP 312
           +  A   A+ P+  A      P
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 49.7 bits (119), Expect = 4e-06
 Identities = 33/154 (21%), Positives = 37/154 (24%), Gaps = 15/154 (9%)

Query: 163 LSSKA--FPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNT------ALPS 214
             S    FP   P   A  P A  P    +PP +   +  P       NT      A P 
Sbjct: 40  SQSGVAEFPWD-PSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPP 98

Query: 215 KTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPP 274
            T   PA     T             P      N A  P   P +   L        AP 
Sbjct: 99  ATFALPAGPAGPTIQTEPGQLYPVQVPVMVTQ-NPANSPLDQPAQQRALQQLQQRYGAP- 156

Query: 275 PASHPSNTAPPPASHPSKTAPPPASHPSNTAPPP 308
                S   P       K          N   PP
Sbjct: 157 ----ASGQLPSQQQSAQKNDESQLQQQPNGETPP 186

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.3 bits (120), Expect = 5e-06
 Identities = 50/203 (24%), Positives = 71/203 (34%), Gaps = 15/203 (7%)

Query: 362 PPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFV 421
             A+ P     P A+ P+  A  PA+ P+  AP  A   +  A   A+ P+  +P P  +
Sbjct: 376 TAAAAPVAQPAPAAAAPAAAAPAPAAPPA--APAAAPAAAAAARAVAAAPARRSPAPEAL 433

Query: 422 PVLPSALPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSMPGPLPPVAQKRNASNRE 481
                A       + +P     APAA P       + A  P+  GP P  A    A  R 
Sbjct: 434 AAARQASARGPGGAPAPAP---APAAAP-------AAAARPAAAGPRPVAAAAAAAPARA 483

Query: 482 APIAEPIAPGPFPPGNSRQKSPVARPIIPGGTPTASPDPDVPPSTP-PLSVDGKRVGKPV 540
           AP A P      PP    ++ P          P A+P   V  S P P + D     + +
Sbjct: 484 APAAAPAPADDDPP--PWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETL 541

Query: 541 AEPSYDIPMPPPVNHSPSKAPST 563
           A      P P     +       
Sbjct: 542 APAPAAAPAPRAAAATEPVVAPR 564

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.6 bits (119), Expect = 8e-06
 Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 14/139 (10%)

Query: 171 ASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALP 230
                 A  P A+ PS  A  PA+ P+  A  PA+           AP+PA+ P      
Sbjct: 385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAA---------APAPAAAP-----Q 430

Query: 231 PASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHP 290
           PA  P+    PP+   +  A    S P   +P     P+  A P  +     APP A  P
Sbjct: 431 PAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAP 490

Query: 291 SKTAPPPASHPSNTAPPPA 309
           +     PA+  +      A
Sbjct: 491 AAAPAAPAAPAAPAGADDA 509

Length = 824

>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor

 Score = 49.8 bits (119), Expect = 8e-06
 Identities = 43/226 (19%), Positives = 67/226 (29%), Gaps = 6/226 (2%)

Query: 185 PSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHP--SNTALPPASLPSKTAPPP 242
             NTA   A  P   A P A  P+     S++    ASH   S        +P       
Sbjct: 5   SINTATKTAVQPE--ATPSAGAPTGLQQSSESPTQRASHSLASEGKKNRKKMPKVFQKSS 62

Query: 243 ASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPS 302
           A      APP A +P   +P  +  P  T     + P +     A   S +A        
Sbjct: 63  APRQIQAAPPQALNPTAAAPQSSRGP--TLRELLALPEDDGETQAPESSPSARRLTRSEG 120

Query: 303 NTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALP 362
                           P +             S+  PP +     ++  PA+  ++ AL 
Sbjct: 121 VARHEMEDLAGRPVVKPDADRQLRQDILNKSSSSRRPPVSKEEGTSSKMPATALASAALF 180

Query: 363 PASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPA 408
                        S  ++ +    S  +  A P  + P    LT +
Sbjct: 181 KDDEIRQEVDAARSDQASQSRLSRSRGNPPAIPPDAAPRQPMLTRS 226

This family is secreted by gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and the fire blight plant pathogen Erwinia amylovora, amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. this conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas. Length = 1771

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 49.4 bits (118), Expect = 9e-06
 Identities = 51/263 (19%), Positives = 63/263 (23%), Gaps = 23/263 (8%)

Query: 69  PTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSLI 128
              ++        +  ST       D+ P PSL  T P   P    AP        P+  
Sbjct: 94  SQKTSTFSPCQSGYEAST-DPEYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQPQTPAQK 152

Query: 129 PTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNT 188
             +       +        LP P      P   P    AFP   PP          P   
Sbjct: 153 MLSLEEVEAQLQQRQQAPQLPQP-PQQVLPQGMPPRQAAFPQQGPPE--------QPPGY 203

Query: 189 ARPPASHPSRTAPPPA-SHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLS 247
            +PP  HP +  P      PS         P     P     P     S+  PPP     
Sbjct: 204 PQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPP----- 258

Query: 248 NTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPP 307
              PP      +  P P + P     P   HP       A  P    P     P    P 
Sbjct: 259 ---PPQPPQQQQQPPQPQAQPPPQNQPTP-HPGLPQGQNAPLPPPQQPQ--LLPLVQQPQ 312

Query: 308 PASHPSNTAP-PPASHPSNTAPP 329
                                  
Sbjct: 313 GQQRGPQFREQLVQLSQQQREAL 335

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.5 bits (119), Expect = 9e-06
 Identities = 20/82 (24%), Positives = 31/82 (37%)

Query: 242 PASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHP 301
           P S  + TA   A+    ++P  A      A P  + P+  AP     P+  A   A+  
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 302 SNTAPPPASHPSNTAPPPASHP 323
           +  A   A+ P+  A      P
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.5 bits (119), Expect = 9e-06
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 170 PASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTAL 229
           P S  +  A   A+  + +A   A  P+  AP   +     A      P PA+  +  A 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAA--PAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAA 95

Query: 230 PPASLPSKTAPPPAS 244
           P A   +  A  PA+
Sbjct: 96  PAAPPAAAAAAAPAA 110

Length = 1228

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 48.6 bits (116), Expect = 9e-06
 Identities = 24/159 (15%), Positives = 35/159 (22%), Gaps = 5/159 (3%)

Query: 220 PASHPSNTALPPASLPSKTAPPPASHLS-NTAPPPASHPYKTSPLPASHPSKTAPPPASH 278
           P+               +  P  A            + P   +  PA++P  T   PA  
Sbjct: 51  PSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTP---TGSPAANPPATFALPAGP 107

Query: 279 PSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTA 338
              T             P      N A  P   P+             AP     PS   
Sbjct: 108 AGPTIQTEPGQLYPVQVPVMVT-QNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQ 166

Query: 339 PPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASH 377
               +  S+    P           A    + A+     
Sbjct: 167 SAQKNDESQLQQQPNGETPPQQTDGAGDDESEALVRLRE 205

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 31/133 (23%), Positives = 44/133 (33%), Gaps = 5/133 (3%)

Query: 293 TAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPP 352
             P P               +N+        ++ A    S P +++P   S  S    P 
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205

Query: 353 ASHPSNTALPPASHPSNPAIPPASH--PSNTAIPPASHPSNTAPPHASHPSNTAL-TPAS 409
           +   S+  LPPA        PP S   P+N + PP        P     P +TA  TP S
Sbjct: 206 SPSDSS--LPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPS 263

Query: 410 HPSNIAPPPLFVP 422
             +  AP      
Sbjct: 264 ASATPAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.7 bits (117), Expect = 1e-05
 Identities = 35/187 (18%), Positives = 51/187 (27%), Gaps = 31/187 (16%)

Query: 103 PTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASP 162
           P  P+  P           +   +  PT  VA P     PP                   
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPP------------------- 401

Query: 163 LSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPAS 222
                 PPAS P  A   P    ++          R      +  S  A  S+  P  ++
Sbjct: 402 ------PPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSA 455

Query: 223 HPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPS--KTAPPPASHPS 280
                ++ PA    + AP             A++P +    P + P   K A      P 
Sbjct: 456 LERLASVRPAPSALEKAPAKK----EAYRWKATNPVEVKKEPVATPKALKKALEHEKTPE 511

Query: 281 NTAPPPA 287
             A   A
Sbjct: 512 LAAKLAA 518

Length = 647

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.5 bits (119), Expect = 1e-05
 Identities = 20/82 (24%), Positives = 31/82 (37%)

Query: 253 PASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHP 312
           P S    T+   A+  + +AP  A      A P  + P+  AP     P+  A   A+  
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 313 SNTAPPPASHPSNTAPPPASHP 334
           +  A   A+ P+  A      P
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.2 bits (115), Expect = 2e-05
 Identities = 34/151 (22%), Positives = 51/151 (33%), Gaps = 13/151 (8%)

Query: 298 ASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPS 357
           A  P+  A   A  P+    P        A  PA+ P       A+  +  A P A+  +
Sbjct: 363 AFKPAAAAEAAA--PAEKKTPARP----EAAAPAAAP---VAQAAAAPAPAAAPAAAASA 413

Query: 358 NTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPP 417
             A P A+ P+  A P A+ P        +          + P+  A    + P  +AP 
Sbjct: 414 PAAPPAAAPPAPVAAPAAAAP----AAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPE 469

Query: 418 PLFVPVLPSALPGKAPVSQSPISLPDAPAAT 448
           P      P+     A    +P    D   AT
Sbjct: 470 PAVASAAPAPAAAPAAARLTPTEEGDVWHAT 500

Length = 618

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 25/115 (21%), Positives = 37/115 (32%), Gaps = 1/115 (0%)

Query: 200 APPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHP-Y 258
                S  S     +  A +  S P +++    S PS    P +   S+  P P+S    
Sbjct: 163 VATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSD 222

Query: 259 KTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPS 313
              P P S  + + PP  + P           S   P P S  +  AP       
Sbjct: 223 TPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLD 277

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 48.3 bits (116), Expect = 2e-05
 Identities = 20/83 (24%), Positives = 31/83 (37%)

Query: 219 SPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASH 278
            P S  + TA   A+  + +AP  A      A P  + P   +P     P+  A   A+ 
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 279 PSNTAPPPASHPSKTAPPPASHP 301
            +  A   A+ P+  A      P
Sbjct: 97  AAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 26/151 (17%), Positives = 35/151 (23%), Gaps = 2/151 (1%)

Query: 239 APPPASHLSNTAPPPASHPYKTSPLPASHPSKTA-PPPASHPSNTAPPPASHPSKTAPPP 297
            PP A        PP +   +  P        T    PA++P  T   PA     T    
Sbjct: 56  PPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTIQTE 115

Query: 298 ASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPS 357
                    P      N A  P   P+             AP      S+      +  S
Sbjct: 116 PGQLYPVQVPVMVT-QNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQKNDES 174

Query: 358 NTALPPASHPSNPAIPPASHPSNTAIPPASH 388
                P           A    + A+     
Sbjct: 175 QLQQQPNGETPPQQTDGAGDDESEALVRLRE 205

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 32/124 (25%), Positives = 38/124 (30%), Gaps = 8/124 (6%)

Query: 256 HPYKTSPLP-ASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSN 314
             Y   PL  A   +   P PA  P   A P A+ PS   P PA  PS      A+    
Sbjct: 344 TSYGQLPLELAVIEALLVPVPAPQP---AKPTAAAPSPVRPTPA--PSTRPKAAAAANIP 398

Query: 315 TAPPPAS--HPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAI 372
              P      P    P P + P    P  A   ++ A P    P  T   P        I
Sbjct: 399 PKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALI 458

Query: 373 PPAS 376
               
Sbjct: 459 ADGD 462

Length = 585

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 48.2 bits (114), Expect = 3e-05
 Identities = 48/270 (17%), Positives = 68/270 (25%), Gaps = 18/270 (6%)

Query: 158 PLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTA 217
           PL +          +  +  A    + P           S   PP     +   +P    
Sbjct: 309 PLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQT 368

Query: 218 PSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPAS 277
             P   P+    P  S  ++ A      L     P   +    +  PA  P     P   
Sbjct: 369 GEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQP 428

Query: 278 HPSNTAPPPASHPSKTAPPPASHPSNT-APPPASHPSNTAPPP-ASHPSNTAPPPASHPS 335
                  P    P       A    +T AP        T   P A  P    P P     
Sbjct: 429 AQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQP 488

Query: 336 NTAPPPASHSSKTAPPPASHPSNT----------------ALPPASHPSNPAIPPASHPS 379
              P P    +K A PP  +                     +P       P       PS
Sbjct: 489 VVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPS 548

Query: 380 NTAIPPASHPSNTAPPHASHPSNTALTPAS 409
             A+PP    +  +P  +     T  T A+
Sbjct: 549 VAAVPPVEAAAAVSPLASGVKKATLATGAA 578

Length = 1355

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.6 bits (114), Expect = 3e-05
 Identities = 25/138 (18%), Positives = 37/138 (26%), Gaps = 4/138 (2%)

Query: 242 PASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPP--PASHPSKTAPPPAS 299
           PA+ L     PP S     S    + P+    PP +      P   P   P+   P   S
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 300 HPSNTAPPPASHPSNTAPPPASHPSNTAPPPAS--HPSNTAPPPASHSSKTAPPPASHPS 357
                          T    +   + +   P +       +  PA  + + AP       
Sbjct: 421 QLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYR 480

Query: 358 NTALPPASHPSNPAIPPA 375
             A  P      P   P 
Sbjct: 481 WKATNPVEVKKEPVATPK 498

Length = 647

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 48.0 bits (115), Expect = 3e-05
 Identities = 21/82 (25%), Positives = 33/82 (40%)

Query: 308 PASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHP 367
           P S  + TA   A+  + +AP  A      A P  +  +  AP     P+  A   A+  
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 368 SNPAIPPASHPSNTAIPPASHP 389
           + PA   A+ P+  A+     P
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 47.7 bits (114), Expect = 3e-05
 Identities = 24/120 (20%), Positives = 37/120 (30%), Gaps = 6/120 (5%)

Query: 275 PASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHP 334
             S  +  APP A+ P+   PPPA+ P+     PA+  +  AP    H            
Sbjct: 44  ADSDLAALAPPAAAAPAAAQPPPAAAPA-AVSRPAAPAAEPAPWLVEHAKRLTAQREQLV 102

Query: 335 SNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAP 394
           +  A P A      AP   +  +             A  P           A+  ++   
Sbjct: 103 ARAAAPAA--PEAQAPAAPAERAAAENAARRLARAAAAAPRPRVP---ADAAAAVADAVK 157

Length = 484

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.3 bits (113), Expect = 4e-05
 Identities = 64/361 (17%), Positives = 100/361 (27%), Gaps = 20/361 (5%)

Query: 239 APPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPA 298
                   +  A  P++     +  PA   +  A   A  P+    P  +     APP  
Sbjct: 385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSP 444

Query: 299 SHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSN 358
           +  +     P+  P+  AP     P+  A P  +     APP A   +     PA+  + 
Sbjct: 445 AGNAPAGGAPSPPPA-AAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503

Query: 359 TALPPASHPSN--PAIPPASHPSNTAIPPASHPSNTAPP---------HASHPSNTALTP 407
                A+      P I  A    +        P  T             ++         
Sbjct: 504 AGADDAATLRERWPEILAAVPKRSRKTWAILLPEATVLGVRGDTLVLGFSTGGLARRFAS 563

Query: 408 ASHPSNIAP---PPLFVPVLPSALPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSM 464
             +   +       L       A+ G AP +      P   ++ P     R  PA   + 
Sbjct: 564 PGNAEVLVTALAEELGGDWQVEAVVGPAPGAAGGEGPPAPASSGPPEEAAR--PAAPAAP 621

Query: 465 PGPLPPVAQKRNASNREAPIAEPIAPGPFPPGNSRQKSPVARPIIPGGTPTASPDPDVPP 524
             P  P      A+  EA  A   APG   P +  +   V      G    A      P 
Sbjct: 622 AAPAAPAPAGAAAAPAEASAAP--APGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPA 679

Query: 525 STPPLSVDGKRVGKPVAEPSYDIPMPPPVNHS-PSKAPSTHKYMRHSNHSPLPPFSSPKP 583
           + PP            A P+   P P     +  +  P+          S   P +    
Sbjct: 680 APPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPV 739

Query: 584 P 584
           P
Sbjct: 740 P 740

Length = 824

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 47.3 bits (113), Expect = 4e-05
 Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 7/105 (6%)

Query: 239 APPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPA 298
           APP A+  +   PPPA+ P      PA+  ++ AP    H            ++ A P A
Sbjct: 52  APPAAAAPAAAQPPPAAAP-AAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAA 110

Query: 299 SHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPAS 343
                 AP   +  +             A   A+ P    P  A+
Sbjct: 111 PEA--QAPAAPAERAAAENAAR----RLARAAAAAPRPRVPADAA 149

Length = 484

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 46.9 bits (112), Expect = 4e-05
 Identities = 22/116 (18%), Positives = 33/116 (28%), Gaps = 4/116 (3%)

Query: 120 NMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAAR 179
            +APP +  P    A PPP  AP  V+   AP+  P   L               + AA 
Sbjct: 50  ALAPPAAAAP--AAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAA 107

Query: 180 PPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLP 235
           P A      A    +  +             A   +      +  +      A + 
Sbjct: 108 PAAPEA--QAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAVKARIE 161

Length = 484

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.1 bits (112), Expect = 4e-05
 Identities = 32/120 (26%), Positives = 44/120 (36%), Gaps = 16/120 (13%)

Query: 86  TPAVSAPFDMAPPPSLIPTNPVASP--PSITAPPPVNMAPPPSLIPTTPVASPPPITAPP 143
           T     P ++A   +L+   P   P  P+  AP PV   P PS  P    A+  P    P
Sbjct: 344 TSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIP-PKEP 402

Query: 144 LVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPP 203
           +      P  +P  P+A P       P +P S      A+ P +        P  T P P
Sbjct: 403 VRETAT-PPPVPPRPVAPP------VPHTPESAPKLTRAAIPVDEK------PKYTPPAP 449

Length = 585

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 20/86 (23%), Positives = 27/86 (31%), Gaps = 6/86 (6%)

Query: 271 TAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPP 330
           T P PA+    T     +    TAP PA  P   A    S             +  AP  
Sbjct: 174 TTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPS------QANVDTAATPAPAA 227

Query: 331 ASHPSNTAPPPASHSSKTAPPPASHP 356
            + P   AP P   +  + P    + 
Sbjct: 228 PATPDGAAPLPTDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.1 bits (112), Expect = 4e-05
 Identities = 30/123 (24%), Positives = 35/123 (28%), Gaps = 16/123 (13%)

Query: 232 ASLPSK--TAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASH 289
           A L  K   A           P     P  T P  A  PS  A    S   ++A    S 
Sbjct: 360 AQLTQKGDDASGG------RGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPS- 412

Query: 290 PSKTAPPPASHPSNTAPPPASHPSNTAP-PPASHPSNTAPPPASHPSNTAPPPASHSSKT 348
               AP  A+ P+ T P  +  P    P  P S       P           P S  S  
Sbjct: 413 ----APQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEK--KIPVSKVSSL 466

Query: 349 APP 351
            P 
Sbjct: 467 GPS 469

Length = 614

>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9

 Score = 46.8 bits (111), Expect = 4e-05
 Identities = 38/252 (15%), Positives = 66/252 (26%), Gaps = 17/252 (6%)

Query: 160 ASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSK--TA 217
           ++P SS   P +SP S+    P      +        +   P   S      L  +    
Sbjct: 388 SNPGSSIDTPSSSPSSSVIMTPPDSGPGSNVSSRRVGT---PGSKSDRVGAVLLRRMNIK 444

Query: 218 PSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPAS 277
           P+ AS P       +        P +S L    PP              +         +
Sbjct: 445 PTLASIPDEKPSNISVFEDSETSPNSSTLLRDPPPKKC---GEESGHLPNNPFFNKLKLT 501

Query: 278 HPSNTAPPPASHPSKTAPPPASHPSNTAPPP--ASHPSNTAPPPASHPSNTAPPPASHPS 335
             S+  P        T P P+   S  +         S +   P  +P+  +   A+  S
Sbjct: 502 L-SSIPPLSPRQSIITLPTPSRPASRISSLSLRLGSYSGSIVSPPPYPTLVSRKGAAGLS 560

Query: 336 NTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPP 395
                      +            ALP  +  +       S   ++++P  +        
Sbjct: 561 FNRSVSDIEGERIGRYNLLPTRIPALPFKAEST------TSSRRSSSLPSPTGVIGFPGS 614

Query: 396 HASHPSNTALTP 407
                    L P
Sbjct: 615 VPRFDHENLLPP 626

The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase. Length = 626

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.5 bits (111), Expect = 6e-05
 Identities = 27/131 (20%), Positives = 42/131 (32%), Gaps = 9/131 (6%)

Query: 168 FPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNT 227
               +    AA P A+  +  A P  +  +  A    +  +        AP PA  P+  
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAA--------APQPAPAPAPA 438

Query: 228 ALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPA 287
             PP+   +  A    S     AP     P   +  P    +    PPA+     AP   
Sbjct: 439 PAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAA-PEPTAAPAPAPPAAPAPAAAPAAP 497

Query: 288 SHPSKTAPPPA 298
           + P+  A    
Sbjct: 498 AAPAAPAGADD 508

Length = 824

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 22/137 (16%), Positives = 32/137 (23%), Gaps = 7/137 (5%)

Query: 272 APPPASHPSNTAPPPASHPSKTAPPPASHPSNTA-PPPASHPSNTAPPPASHPSNTAPPP 330
            PP A  P     PP +   +  P       NT    PA++P  T   PA     T    
Sbjct: 56  PPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTIQTE 115

Query: 331 ASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPS 390
                    P     +    P        AL              +     +   ++  +
Sbjct: 116 PGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYG----APASGQLPSQQQSAQKN 171

Query: 391 NTAPPHASHPSNTALTP 407
                      N    P
Sbjct: 172 --DESQLQQQPNGETPP 186

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 46.6 bits (110), Expect = 6e-05
 Identities = 53/261 (20%), Positives = 77/261 (29%), Gaps = 9/261 (3%)

Query: 274 PPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASH 333
           P ++ P +    PA         P + P+ +    ++      P P  HPS T  PP   
Sbjct: 553 PASTEPVHDQLLPAPGLGPLQIQPLTSPTTSQLASSAPSYAQTPWPVPHPSQTPEPP--- 609

Query: 334 PSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTA 393
            +  +  P + + +  P P        L       N  + P  H           P+ T 
Sbjct: 610 -TTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWTQ 668

Query: 394 PPHASHPSNTALTPASHPSNIAPPPLFVPVL---PSALPGKAPVSQSPISLPDAPAATPR 450
             H  +  +        P   AP  +  P     P   P   P      +     A  P 
Sbjct: 669 IGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPA 728

Query: 451 GNFHRHSPAIHPSMPGPLPPVAQKRNASNREAPIAEPIAPGPFPPGNSRQKSPVARPIIP 510
               R  P    + PG   P A     +   A       P    PG    + P   P  P
Sbjct: 729 AAPGRARPP--AAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAP 786

Query: 511 GGTPTASPDPDVPPSTPPLSV 531
              P  +P P  PP   P S+
Sbjct: 787 QQRPRGAPTPQPPPQAGPTSM 807

Length = 991

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.3 bits (110), Expect = 7e-05
 Identities = 29/112 (25%), Positives = 38/112 (33%), Gaps = 7/112 (6%)

Query: 219 SPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASH 278
           S    P   A+  A L    AP PA          A  P + +P P++ P   A   A+ 
Sbjct: 345 SYGQLPLELAVIEALLVPVPAPQPA-----KPTAAAPSPVRPTPAPSTRP--KAAAAANI 397

Query: 279 PSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPP 330
           P        + P    P P + P    P  A   +  A P    P  T P P
Sbjct: 398 PPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAP 449

Length = 585

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 46.2 bits (109), Expect = 8e-05
 Identities = 71/283 (25%), Positives = 92/283 (32%), Gaps = 9/283 (3%)

Query: 68  LPTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSL 127
           +P      PV +   S + P          PP  +P+       +  +   +    PP  
Sbjct: 275 MPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPRE 334

Query: 128 IPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSN 187
            P  P  S P I  PP     P P L   +    P      P    PSN   PPA  P +
Sbjct: 335 QPLPPAPSMPHIKPPPTT---PIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLS 391

Query: 188 TARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLS 247
           +  P    PS   PP    P +  L S  A  P    S +  P AS      P    H  
Sbjct: 392 SL-PTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTH----PHSGLHSG 446

Query: 248 NTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPP 307
               P A HP+ +  LPA  P  + P         A   +  P    P          P 
Sbjct: 447 PPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPL 506

Query: 308 PASHPSNTAPPPASHPSNTAPPPAS-HPSNTAPPPASHSSKTA 349
           P           A  P +  PPP S  P  T     SH+S++A
Sbjct: 507 PPIQIKEEPLDEAEEPESPPPPPRSPSPEPTVVNTPSHASQSA 549

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.3 bits (110), Expect = 8e-05
 Identities = 26/127 (20%), Positives = 39/127 (30%), Gaps = 7/127 (5%)

Query: 285 PPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASH--PSNTAPPPASHPSNTAPPPA 342
                P +   P  + P+  AP P++  + +  P  S      +AP  A+ P+ T P  +
Sbjct: 370 SGGRGPKQHIKPVFTQPAA-APQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVS 428

Query: 343 SHSSKTAP-PPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPS 401
                  P  P S       P         IP +   S    P    P       A+   
Sbjct: 429 VDPPAAVPVNPPSTAPQAVRPAQFKEEKK-IPVSKVSSLG--PSTLRPIQEKAEQATGNI 485

Query: 402 NTALTPA 408
             A T  
Sbjct: 486 KEAPTGT 492

Length = 614

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 45.7 bits (109), Expect = 9e-05
 Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 3/110 (2%)

Query: 308 PASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHP 367
             S  +  APP A+ P+   PPPA+ P+     PA+ +++ AP    H            
Sbjct: 44  ADSDLAALAPPAAAAPAAAQPPPAAAPA-AVSRPAAPAAEPAPWLVEHAKRLTAQREQLV 102

Query: 368 SNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPP 417
           +  A P A      A    +  +             A  P       A  
Sbjct: 103 ARAAAPAAPEAQAPA--APAERAAAENAARRLARAAAAAPRPRVPADAAA 150

Length = 484

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.1 bits (109), Expect = 9e-05
 Identities = 25/91 (27%), Positives = 31/91 (34%), Gaps = 15/91 (16%)

Query: 157 TPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKT 216
           +P  SP   K  P    P     P  + P      PA       P PAS P     P + 
Sbjct: 383 SPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPA-----ELPSPASAP----TPEQQ 433

Query: 217 APSPASHPSNTALPPASLPSKTAPPPASHLS 247
            P   S P    LPP+  P  +AP   +   
Sbjct: 434 PPVARSAP----LPPS--PQASAPRNVASGK 458

Length = 620

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.6 bits (108), Expect = 1e-04
 Identities = 42/226 (18%), Positives = 54/226 (23%), Gaps = 17/226 (7%)

Query: 20  AFTVQGSAGYGIPPSPAIIGGHFLLPRLPVTFTLKPHLLGGHAPSPIELPTHSAPPPVNI 79
           AF    S G   P + A        P         P      A         +A   V  
Sbjct: 362 AFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAA 421

Query: 80  PSFSPS-----TPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSLIPTTPVA 134
                S       A        P  +  P    A+ P+  A P      P         A
Sbjct: 422 APARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPV-----AAAA 476

Query: 135 SPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPAS 194
           +  P  A P     PA    P      P     F   +P    A P      +   P  +
Sbjct: 477 AAAPARAAPAAAPAPADDDPPPWEELPP----EFASPAPAQPDAAPAGWVAESIPDPATA 532

Query: 195 HPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAP 240
            P       A  P+    P   A +    P     PP +  S    
Sbjct: 533 DPDDAFETLAPAPAAAPAPRAAAATE---PVVAPRPPRASASGLPD 575

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.3 bits (107), Expect = 1e-04
 Identities = 31/173 (17%), Positives = 45/173 (26%), Gaps = 12/173 (6%)

Query: 62  APSPIELPTHSAPPPVNIPSFSPSTPAVSAPFDMAPP-PSLIPTNPVASPPSITAPPPVN 120
           A +    P   +P P  + +   ++           P P+  P        +   P    
Sbjct: 416 ARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAA 475

Query: 121 MAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARP 180
            A  P        A+P    AP   +  P   L P     +P    A P      +   P
Sbjct: 476 AAAAP------ARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDP 529

Query: 181 PASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPAS 233
             + P       A      AP  A  P   A             S + LP   
Sbjct: 530 ATADP-----DDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMF 577

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.7 bits (109), Expect = 1e-04
 Identities = 39/197 (19%), Positives = 53/197 (26%), Gaps = 1/197 (0%)

Query: 60  GHAPSPIELPTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPV 119
           G AP         AP     P  +    A +AP   A P         A   +  AP   
Sbjct: 589 GPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVA 648

Query: 120 NMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAAR 179
                P  +     +              PA       P A    + A P    P+ AA 
Sbjct: 649 APEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAAT 708

Query: 180 PPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPA-SHPSNTALPPASLPSKT 238
           PPA    + A  P       + P  +      LP +    P  +       PP +     
Sbjct: 709 PPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAA 768

Query: 239 APPPASHLSNTAPPPAS 255
           AP  A   S  +     
Sbjct: 769 APAAAPPPSPPSEEEEM 785

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 33/158 (20%), Positives = 42/158 (26%), Gaps = 24/158 (15%)

Query: 137 PPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHP 196
            P   PPL        +  T    S     A P ++ PS+        PS  + P     
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSS 206

Query: 197 SRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASH 256
              +  P                PA     +  PP S  S T P P        PP  + 
Sbjct: 207 PSDSSLP----------------PAPSSFQSDTPPPSPESPTNPSP--------PPGPAA 242

Query: 257 PYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTA 294
           P           S   P P S  +  AP         A
Sbjct: 243 PPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDDDA 280

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.6 bits (109), Expect = 1e-04
 Identities = 28/159 (17%), Positives = 42/159 (26%), Gaps = 5/159 (3%)

Query: 61  HAPSPIELPTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVN 120
             P P   P  +AP      + +P+           PPP    + P  +P          
Sbjct: 364 PLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPP--ASAPQQAPAVPLPETTSQ 421

Query: 121 -MAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAAR 179
            +A    L                     P  S +       P +  A   A     A R
Sbjct: 422 LLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRP-APSALEKAPAKKEAYR 480

Query: 180 PPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAP 218
             A++P    + P + P         H     L +K A 
Sbjct: 481 WKATNPVEVKKEPVATPK-ALKKALEHEKTPELAAKLAA 518

Length = 647

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 46.0 bits (110), Expect = 1e-04
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 306 PPPASHPSNTAPPPASHPSNTAPPPAS--HPSNTAPPPASHSSKTAPPPASHPSNTALPP 363
           P   + P+  A   A+  S  A  PA+    +    PPA+ +    P PA+  +  A P 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 364 ASHPSNPAIPPAS 376
           A   +  A  PA+
Sbjct: 98  APPAAAAAAAPAA 110

Length = 1228

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 45.6 bits (108), Expect = 1e-04
 Identities = 30/202 (14%), Positives = 48/202 (23%), Gaps = 20/202 (9%)

Query: 249 TAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPP- 307
            APPP      + P       +         ++  PP      +      ++P+    P 
Sbjct: 95  PAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPE 154

Query: 308 PASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSN--TALPPAS 365
           P + P               PP A + S  +  P     +   P  +             
Sbjct: 155 PGAWPRAADDYGWQQQRLGFPPRAPYASPASYAP--EQERDREPYDAGRPEYDQRRRDYD 212

Query: 366 HPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLP 425
           HP      P    ++    P   P                     P         V  + 
Sbjct: 213 HPRPDWDRPRRDRTDR---PEPPPGAGHVHRGG------------PGPPERDDAPVVPIR 257

Query: 426 SALPGKAPVSQSPISLPDAPAA 447
            + PG      +P   P  P A
Sbjct: 258 PSAPGPLAAQPAPAPGPGEPTA 279

Length = 617

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 45.3 bits (108), Expect = 1e-04
 Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 297 PASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHP 356
             S  +  APP A+ P+   PPPA+ P+     PA+  +  AP    H+ +         
Sbjct: 44  ADSDLAALAPPAAAAPAAAQPPPAAAPA-AVSRPAAPAAEPAPWLVEHAKRLTAQREQLV 102

Query: 357 SNTALPPASHPSNPAIPPA-----SHPSNTAIPPASHPSNTAPPHAS 398
           +  A P A     PA P       +     A   A+ P    P  A+
Sbjct: 103 ARAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAA 149

Length = 484

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 45.4 bits (108), Expect = 1e-04
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 6/93 (6%)

Query: 187 NTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHL 246
           +T   PA+ P+  AP   +  ++      TAP+PA  P   A+   S             
Sbjct: 167 STTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPS------QANVDTA 220

Query: 247 SNTAPPPASHPYKTSPLPASHPSKTAPPPASHP 279
           +  AP   + P   +PLP      + P    + 
Sbjct: 221 ATPAPAAPATPDGAAPLPTDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.5 bits (108), Expect = 1e-04
 Identities = 33/156 (21%), Positives = 47/156 (30%), Gaps = 14/156 (8%)

Query: 164 SSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHP-------SNTALPSKT 216
           SS    P +PPS A  PPAS     + P AS  S +                  AL S +
Sbjct: 639 SSADRKPKTPPSRA--PPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGS 696

Query: 217 APSPASHPSNTALPPASLPSKTAP---PPASHLSNTAPPPASHPYKTSPLPASHPSKTAP 273
           AP+P   P     PP     + A     P +                S L A    +   
Sbjct: 697 APAPPPVPDPYDRPPWEEAPEVASANDGPNNAAEGNLSESV-EDASNSELQAVEQ-QATH 754

Query: 274 PPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPA 309
            P       +P   +  ++T+        N     +
Sbjct: 755 QPQVQAEAQSPASTTALTQTSSEVQDTELNLVLLSS 790

Length = 944

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.9 bits (106), Expect = 2e-04
 Identities = 66/263 (25%), Positives = 82/263 (31%), Gaps = 27/263 (10%)

Query: 162 PLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPA 221
           PL      PA PP       A     TAR          PP A+ P+  A P       A
Sbjct: 247 PLRGDIAAPAPPPVVGEG--ADRAPETARGA---TGPPPPPEAAAPNGAAAPPDGVWGAA 301

Query: 222 SHPSNTALPPASLPSKTAPPPASHLSN------TAPPPASHPYKTSPLPASHPSK-TAPP 274
              +  ALP    P   AP   +   +          P   P +  PL      + T  P
Sbjct: 302 LAGAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTP 361

Query: 275 PAS--------HPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNT 326
           P+S        H    A  P     + +   A+ P    P         AP PAS P+  
Sbjct: 362 PSSLEDLSAGRHHPKRASLPTR--KRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPA 419

Query: 327 APP-PASHPSNTAPPPASHSSKT----APPPASHPSNTALPPASHPSNPAIPPASHPSNT 381
             P PAS P   A P  S    +    APPP   P   A  PA    + A   A      
Sbjct: 420 PTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRE 479

Query: 382 AIPPASHPSNTAPPHASHPSNTA 404
             PP    ++ A     HP    
Sbjct: 480 RRPPEPPGADLAELLGRHPDTAG 502

Length = 3151

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 41/180 (22%), Positives = 52/180 (28%), Gaps = 28/180 (15%)

Query: 353 ASHPSNT-ALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHP 411
           A HP+     P     S      A   +      A   +   PP           PAS P
Sbjct: 358 AFHPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPP----------PASAP 407

Query: 412 SNIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSMPGPLPPV 471
                 PL            + +  +   L  A  AT        +    P+      PV
Sbjct: 408 QQAPAVPLPETT--------SQLLAARQQLQRAQGATK-------AKKSEPAAASRARPV 452

Query: 472 --AQKRNASNREAPIAEPIAPGPFPPGNSRQKSPVARPIIPGGTPTASPDPDVPPSTPPL 529
             A +R AS R AP A   AP        +  +PV     P  TP A         TP L
Sbjct: 453 NSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPEL 512

Length = 647

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 45.3 bits (108), Expect = 2e-04
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 8/92 (8%)

Query: 172 SPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPP 231
            P S AA   A+  +  A    +       P A  P   A P+  AP+    P+  A   
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAP---APPAAAAPAAPPKPAAAAAAA 93

Query: 232 ASLPSKTAPPPASHLSNTAPPPASHPYKTSPL 263
           A+  +  A   A      AP  A+   + +PL
Sbjct: 94  AAPAAPPAAAAA-----AAPAAAAVEDEVTPL 120

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 4/76 (5%)

Query: 213 PSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTA 272
            S  AP+ A+  +  A    +       P A        PPA+      P PA+  +  A
Sbjct: 39  GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAP----APAPPAAAAPAAPPKPAAAAAAAA 94

Query: 273 PPPASHPSNTAPPPAS 288
            P A   +  A  PA+
Sbjct: 95  APAAPPAAAAAAAPAA 110

Length = 1228

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 29/216 (13%), Positives = 49/216 (22%), Gaps = 10/216 (4%)

Query: 308 PASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHP 367
           P+                  P  A      A     H++ T  P A+ P+  ALP    P
Sbjct: 51  PSPQAPPPVAQLPQPLPQPPPTQALQAL-PAGDQQQHNTPTGSPAANPPATFALPA--GP 107

Query: 368 SNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSA 427
           + P I            P     N A      P+             AP    +P     
Sbjct: 108 AGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQ- 166

Query: 428 LPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSMPGPLPPVAQKRNASNREAPIAEP 487
              +          P+      + +      +             ++R          + 
Sbjct: 167 -SAQKNDESQLQQQPNGETPPQQTDGAGDDESEALVRLREADGTLEQRIKGAEGGGAMKV 225

Query: 488 IAPGPFPPGNSRQKSPVARPIIPGGTPTASPDPDVP 523
           +          + KS   R I       +  + D  
Sbjct: 226 LK-----QPKKQAKSSKRRTIAQIDGIDSDDEGDGS 256

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 44.6 bits (106), Expect = 2e-04
 Identities = 23/104 (22%), Positives = 33/104 (31%), Gaps = 8/104 (7%)

Query: 185 PSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPAS 244
           P+  A   A  P   AP   S P+  A  ++ AP    H          L ++ A P A 
Sbjct: 54  PAAAAPAAAQPPPAAAPAAVSRPA--APAAEPAPWLVEHAKRLTAQREQLVARAAAPAAP 111

Query: 245 HLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPAS 288
                AP   +              + A   A+ P    P  A+
Sbjct: 112 --EAQAPAAPAERAAAENAAR----RLARAAAAAPRPRVPADAA 149

Length = 484

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.2 bits (107), Expect = 2e-04
 Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 1/95 (1%)

Query: 81  SFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPIT 140
              P      A    A P  + PT   ++ P   A   +    P     T P   P P  
Sbjct: 359 LLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRP-V 417

Query: 141 APPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPS 175
           APP+ +   +   +    +      K  PPA P  
Sbjct: 418 APPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKE 452

Length = 585

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.8 bits (106), Expect = 2e-04
 Identities = 24/98 (24%), Positives = 30/98 (30%), Gaps = 9/98 (9%)

Query: 200 APPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYK 259
            P PA  P+     + +   P   PS      A+       P       TA PP      
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRE----TATPP-----P 411

Query: 260 TSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPP 297
             P P + P    P  A   +  A P    P  T P P
Sbjct: 412 VPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAP 449

Length = 585

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 18/92 (19%), Positives = 27/92 (29%), Gaps = 6/92 (6%)

Query: 309 ASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPS 368
            +    T P PA+    T     +    TAP PA    + A    S  +          +
Sbjct: 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQAN------VDTAA 221

Query: 369 NPAIPPASHPSNTAIPPASHPSNTAPPHASHP 400
            PA    + P   A  P      + P    + 
Sbjct: 222 TPAPAAPATPDGAAPLPTDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.2 bits (107), Expect = 2e-04
 Identities = 26/121 (21%), Positives = 35/121 (28%), Gaps = 13/121 (10%)

Query: 267 HPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNT 326
                 P     P  T P  A  PS  A    S   ++A    S     AP  A+ P+ T
Sbjct: 369 ASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPS-----APQSATQPAGT 423

Query: 327 APPPASHPSNTAP-PPASHSSKTAPPPASHPSNTALPPASHPS------NPAIPPASHPS 379
            P  +  P    P  P S + +   P          P +   S       P    A   +
Sbjct: 424 PPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKI-PVSKVSSLGPSTLRPIQEKAEQAT 482

Query: 380 N 380
            
Sbjct: 483 G 483

Length = 614

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 21/97 (21%), Positives = 27/97 (27%), Gaps = 6/97 (6%)

Query: 300 HPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNT 359
                 P     P  T P  A  PS  A    S   ++A    S     AP  A+ P+ T
Sbjct: 369 ASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPS-----APQSATQPAGT 423

Query: 360 ALPPASHPSNPA-IPPASHPSNTAIPPASHPSNTAPP 395
               +  P     + P S       P         P 
Sbjct: 424 PPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPV 460

Length = 614

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 45.4 bits (107), Expect = 2e-04
 Identities = 71/274 (25%), Positives = 98/274 (35%), Gaps = 22/274 (8%)

Query: 137 PPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARP-PASHPSNTARPPASH 195
           P  T P    +LPAP L P         + +   +S PS A  P P  HPS T  PP + 
Sbjct: 553 PASTEPVHDQLLPAPGLGPLQIQPLTSPTTSQLASSAPSYAQTPWPVPHPSQTPEPPTTQ 612

Query: 196 ------------PSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPA 243
                       P    P P        +       P  H           P+ T     
Sbjct: 613 SHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWTQIGHI 672

Query: 244 SHLSNTAPPPASHPYKTSPLPASHPSKT---APPPASHPSNTAPPPASHPSKTAPPPASH 300
            +  +        P + +P     P +      PPA+ P     P A+  +  A PPA+ 
Sbjct: 673 PYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAA--TGRARPPAAA 730

Query: 301 PSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTA 360
           P    PP A+     A PPA+ P   A PPA+ P    PP A+  + T  PP   P    
Sbjct: 731 PGRARPPAAA--PGRARPPAAAPG-RARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQ 787

Query: 361 LPPASHPSNPAIPPASHPSNTAIPPASHPSNTAP 394
             P   P+ P  PP + P++  + P + P    P
Sbjct: 788 QRPRGAPT-PQPPPQAGPTSMQLMPRAAPGQQGP 820

Length = 991

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 19/79 (24%), Positives = 25/79 (31%), Gaps = 4/79 (5%)

Query: 177 AARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPP----A 232
           A  P  S       P    P     P  + P          PSPAS P+    PP    A
Sbjct: 381 APSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSA 440

Query: 233 SLPSKTAPPPASHLSNTAP 251
            LP         ++++  P
Sbjct: 441 PLPPSPQASAPRNVASGKP 459

Length = 620

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 45.0 bits (107), Expect = 2e-04
 Identities = 38/214 (17%), Positives = 56/214 (26%), Gaps = 22/214 (10%)

Query: 65   PIELPTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPP 124
            P+  P                 P V+     A    ++    V +   +   P V   P 
Sbjct: 846  PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQ 905

Query: 125  PSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASH 184
            P  +       P  I AP  V   P         +A  ++  A P   P           
Sbjct: 906  PEEVVVVETTHPEVIAAP--VTEQPQVITESDVAVAQEVAEHAEPVVEPQ---------- 953

Query: 185  PSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPAS 244
                    A+  +          +  A P   A   A   + TA+ P   P++       
Sbjct: 954  DETADIEEAAETAEVVVAEPEVVAQPAAPV-VAEVAAEVETVTAVEPEVAPAQVPEATVE 1012

Query: 245  HLSNTAPPPASHPYKTSPLPASHPSKTAPPPASH 278
            H   TA      P   +P P   P     P  S 
Sbjct: 1013 HNHATA------PMTRAPAPEYVPE---APRHSD 1037

Length = 1068

>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional

 Score = 45.1 bits (106), Expect = 2e-04
 Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 15/175 (8%)

Query: 175 SNAARPPASHPSNT--ARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPA 232
           SNAA+  A   SN   + P  S+P     P ++ P N    S T   P S+P N+  P +
Sbjct: 400 SNAAQSNAGF-SNAGYSNPGNSNPGYNNAPNSNTPYNNPPNSNT---PYSNPPNSNPPYS 455

Query: 233 SLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSK 292
           +LP    P   + LSN   PP+S     S   A++  + A  PA++       P ++   
Sbjct: 456 NLPYSNTPYSNAPLSNA--PPSSAKDHHSAYHAAYQHRAANQPAAN------LPTANQPA 507

Query: 293 TAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSK 347
                 +  ++   P AS P  +A P   + + TA P         P   ++  K
Sbjct: 508 ANNFHGAAGNSVGNPFASRPFGSA-PYGGNAATTADPNGIAKREDHPEGGTNRQK 561

Length = 1560

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.7 bits (105), Expect = 2e-04
 Identities = 46/151 (30%), Positives = 62/151 (41%), Gaps = 17/151 (11%)

Query: 144 LVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARP-PASHPSNTARPPASHPSRTAPP 202
           L+N+   P L+P   L       +   AS PS +A   PAS  + T   P +   +   P
Sbjct: 356 LLNLAMLPRLMPVESL-----RPSGGGASAPSGSAAEGPASGGAATIPTPGTQGPQGTAP 410

Query: 203 PASHPSNTALPSKTAPSPASHPSN--TALPPASLPSKTAPPPASHLSNTAPPPASHPYKT 260
            A    ++A P+  APS A  P       PPA   S   P PA  +   +P P +     
Sbjct: 411 AAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEASPVPGA----- 465

Query: 261 SPLPASHPSKT-APPPASHPSNTAPPPASHP 290
              P S  S + APP    PS+TA    S P
Sbjct: 466 ---PDSVASASDAPPTLGDPSDTAEHTPSGP 493

Length = 624

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.5 bits (105), Expect = 3e-04
 Identities = 59/249 (23%), Positives = 79/249 (31%), Gaps = 22/249 (8%)

Query: 104 TNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPL 163
             PV    +  AP     A  P   P  P A+ P   A P   V  A   +   PLA P 
Sbjct: 257 PPPVVGEGADRAPETARGATGP---PPPPEAAAPNGAAAPPDGVWGAA--LAGAPLALP- 310

Query: 164 SSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASH 223
                   +PP      PA           +    +  P          P +  P+    
Sbjct: 311 --------APPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPP 362

Query: 224 PSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTA 283
            S   L       K A  P       +   A+ P+   P         AP PAS P+   
Sbjct: 363 SSLEDLSAGRHHPKRASLPTR--KRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAP 420

Query: 284 PPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPAS 343
            P  +    +APPP + P  +A P +      APPP   P   A  PA    + A   A 
Sbjct: 421 TPVPA----SAPPPPATPLPSAEPGS--DDGPAPPPERQPPAPATEPAPDDPDDATRKAL 474

Query: 344 HSSKTAPPP 352
            + +   PP
Sbjct: 475 DALRERRPP 483

Length = 3151

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 26/116 (22%), Positives = 38/116 (32%), Gaps = 5/116 (4%)

Query: 73  APPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPV---NMAPPPSLIP 129
           A P    P+ +P   A +AP   A P +       A+PP+   P PV     A P +   
Sbjct: 382 ARPEAAAPAAAPVAQAAAAPAPAAAPAAAAS--APAAPPAAAPPAPVAAPAAAAPAAAPA 439

Query: 130 TTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHP 185
             P A       P           +   P  +  S+   P A+P +    P     
Sbjct: 440 AAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGD 495

Length = 618

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 30/124 (24%), Positives = 44/124 (35%), Gaps = 1/124 (0%)

Query: 315 TAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPP 374
             P P               +N+        +  A    S P +++    S PS P  P 
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205

Query: 375 ASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPV 434
           +   S+    P+S  S+T PP    P+N +  P        PP   VP L +A P     
Sbjct: 206 SPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPP-PPPVQQVPPLSTAKPTPPSA 264

Query: 435 SQSP 438
           S +P
Sbjct: 265 SATP 268

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 44.2 bits (105), Expect = 3e-04
 Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 7/105 (6%)

Query: 217 APSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPA 276
           AP  A+ P+    PPA+ P+  + P A   +  AP    H  +                 
Sbjct: 52  APPAAAAPAAAQPPPAAAPAAVSRPAA-PAAEPAPWLVEHAKR--LTAQREQLVARAAAP 108

Query: 277 SHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPAS 321
           + P   AP   +  +             A   A+ P    P  A+
Sbjct: 109 AAPEAQAPAAPAERAAAENAAR----RLARAAAAAPRPRVPADAA 149

Length = 484

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.4 bits (105), Expect = 3e-04
 Identities = 29/125 (23%), Positives = 37/125 (29%), Gaps = 7/125 (5%)

Query: 230 PPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASH 289
               LP + A   A  +   AP PA     T+  P+      AP      +  A  P   
Sbjct: 345 SYGQLPLELAVIEALLVPVPAPQPAK---PTAAAPSPVRPTPAPSTRPKAAAAANIPPKE 401

Query: 290 PSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTA 349
           P +    P   P    P P + P    P  A   +  A P    P  T P P     K  
Sbjct: 402 PVRETATP---PPVP-PRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKAL 457

Query: 350 PPPAS 354
                
Sbjct: 458 IADGD 462

Length = 585

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.4 bits (105), Expect = 3e-04
 Identities = 26/107 (24%), Positives = 31/107 (28%), Gaps = 7/107 (6%)

Query: 283 APPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPAS--HPSNTAPP 340
            P PA  P   A P A+ PS   P PA  PS      A+       P      P    P 
Sbjct: 361 VPVPAPQP---AKPTAAAPSPVRPTPA--PSTRPKAAAAANIPPKEPVRETATPPPVPPR 415

Query: 341 PASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPAS 387
           P +      P  A   +  A+P    P      P        I    
Sbjct: 416 PVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGD 462

Length = 585

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 20/89 (22%), Positives = 28/89 (31%), Gaps = 5/89 (5%)

Query: 171 ASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPA--SHPSNTA 228
            +        PA+    T     +    TAP PA  P   A+    APS A     +  A
Sbjct: 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAV---VAPSQANVDTAATPA 224

Query: 229 LPPASLPSKTAPPPASHLSNTAPPPASHP 257
               + P   AP P      + P    + 
Sbjct: 225 PAAPATPDGAAPLPTDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.4 bits (105), Expect = 3e-04
 Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 8/99 (8%)

Query: 256 HPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNT 315
                 P     P  T P  A  PS  A   +  PS+++         +AP  A+ P+  
Sbjct: 369 ASGGRGPKQHIKPVFTQPAAAPQPSA-AAAASPSPSQSSAAAQP----SAPQSATQPA-G 422

Query: 316 APPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPAS 354
            PP  S     A  P + P +TAP     +         
Sbjct: 423 TPPTVSVDP-PAAVPVN-PPSTAPQAVRPAQFKEEKKIP 459

Length = 614

>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1 family)

 Score = 44.1 bits (104), Expect = 3e-04
 Identities = 32/205 (15%), Positives = 49/205 (23%), Gaps = 34/205 (16%)

Query: 179 RPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKT 238
           R          +      +   PP  S  S       + PS   +  N      SL    
Sbjct: 437 RQEKQRAKARKKLANKTSTVMEPPYGSTES----SVPSTPSTRRNDRNITSNTPSLKRT- 491

Query: 239 APPPASHLSNTAPPPASHPYKTSPLPASHPSKT---APPPASHPSNTAPPPASHPSK-TA 294
              P    S+                 S  +        P    +    P AS  SK   
Sbjct: 492 ---PNLTKSSL---------SQEASLISKSTGNTHKHSTPRRLTTLPKLPAASRSSKGNL 539

Query: 295 PPPASHP--SNTAPPPAS----HPSNTAPP--PASHPSNTAPPPASHPSNTAPPPASHSS 346
               ++   S+    P S     P ++ P               AS        P+++  
Sbjct: 540 IRSGANGNASSDLSSPGSINSKSPEHSVPLVRVFDIHLR-----ASTTKGRHSTPSTNEK 594

Query: 347 KTAPPPASHPSNTALPPASHPSNPA 371
           K      S  S      A+ P   +
Sbjct: 595 KKRLLKRSPLSPPKESVATTPRLNS 619

Length = 619

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 44.3 bits (104), Expect = 3e-04
 Identities = 51/259 (19%), Positives = 69/259 (26%), Gaps = 26/259 (10%)

Query: 191 PPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTA 250
           P AS     AP            SK +  P                   P          
Sbjct: 514 PEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGK--------------PGETKEGEVGK 559

Query: 251 PPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPAS 310
            P  +  +K S +P        P    HP +   P      ++A  P    S   P    
Sbjct: 560 KPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLD 619

Query: 311 HPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNP 370
            P  +   P S  S   PPP   PS+   P      K+  PP S            P +P
Sbjct: 620 IP-KSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKS---------PKPPFDP 669

Query: 371 AIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALPG 430
                 +  +  +  A+    T        S  ++   + P     P      LP  LP 
Sbjct: 670 KFKEKFY--DDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPR 727

Query: 431 KAPVSQSPISLPDAPAATP 449
                  PI  PDA     
Sbjct: 728 DEEFPFEPIGDPDAEQPDD 746

Length = 943

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.2 bits (104), Expect = 4e-04
 Identities = 61/258 (23%), Positives = 78/258 (30%), Gaps = 16/258 (6%)

Query: 133 VASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPP 192
            A  PP       +  P  +   T P   P ++     A+PP       A   +  A P 
Sbjct: 253 AAPAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVW-GAALAGAPLALPA 311

Query: 193 ASHPSRTAPPPASHPSNTALPSKTAPSPASHPSN---TALPPASLPSKTAPPPASHLSNT 249
              P   AP   +   +    +    SP   P        P    P+ T P     LS  
Sbjct: 312 PPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSA- 370

Query: 250 APPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPP-P 308
                 H  K + LP     + +   A+ P    P         AP PAS P+    P P
Sbjct: 371 ----GRHHPKRASLPTR--KRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVP 424

Query: 309 ASHPSNTAPPPAS----HPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPA 364
           AS P   A P  S         APPP   P   A  PA      A   A        PP 
Sbjct: 425 ASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRPPE 484

Query: 365 SHPSNPAIPPASHPSNTA 382
              ++ A     HP    
Sbjct: 485 PPGADLAELLGRHPDTAG 502

Length = 3151

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 43.9 bits (103), Expect = 4e-04
 Identities = 104/506 (20%), Positives = 145/506 (28%), Gaps = 42/506 (8%)

Query: 171 ASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALP 230
            SP  +  R      S+T  P      ++     S P++   PS+          ++   
Sbjct: 74  TSPLKSTKRQREKPASDTEEPERVTAKKSKTQELSRPNS---PSEGEGEGEGEGESSDSR 130

Query: 231 PASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHP 290
             +    + P      + ++ P    P        S   +    P   PS   PP A+  
Sbjct: 131 SVNEEGSSDPKDIDQDNRSSSPSIPSPQDNESDSDSSAQQQLLQPQGPPSIQVPPGAALA 190

Query: 291 SKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAP 350
               PP  S  +               P    P +    P+ HP     P      +TA 
Sbjct: 191 PSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTAS 250

Query: 351 PPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASH 410
             +  P     P + HP +    P         PP  H     P    HPS      ++ 
Sbjct: 251 QQSPQP---PAPSSRHPQSSHHGP--------GPPMPHALQQGPVFLQHPS------SNP 293

Query: 411 PSNIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSMPGPLPP 470
           P         VP LP     +      P      P   PR      +P++    P P  P
Sbjct: 294 PQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTP 353

Query: 471 VAQKRNASNREAPIAEPIAPGPFPPGNSRQKSPVARPIIPGGTPTASPDPDVPPSTPPLS 530
           + Q  N S++  P  +   P PFP   S    P      P   P +S     PPS  P  
Sbjct: 354 IPQLPNQSHKHPPHLQ--GPSPFPQMPSNLPPP------PALKPLSSLPTHHPPSAHPPP 405

Query: 531 VDGKRVGKPVAEPSYDIPMPPPVNHSPSKAPSTHKYMRHSNHSPLPPFSSPKPPQNNGND 590
           +      +P+       P+       P KA +      HS     P    P         
Sbjct: 406 LQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAI 465

Query: 591 TPVSSPLASFPKHRDVRNKIASSPAPSYFISPTTSIHQGPVVPPSFIPTSRKRHYGPPPL 650
            P  S   S P         A+ P  S    P  S            P          PL
Sbjct: 466 GPPPSLPTSTP---------AAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPL 516

Query: 651 NSVSPSHSPLPTPVSRVPTSPSPSPT 676
           +      SP P      P SPSP PT
Sbjct: 517 DEAEEPESPPPP-----PRSPSPEPT 537

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 31/133 (23%), Positives = 42/133 (31%), Gaps = 5/133 (3%)

Query: 304 TAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPP 363
             P P               +N+        ++ A    S    ++P   S PS    P 
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205

Query: 364 ASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPV 423
           +   S+   PPA     +  PP S  S T P   S P   A  P      + P     P 
Sbjct: 206 SPSDSSL--PPAPSSFQSDTPPPSPESPTNP---SPPPGPAAPPPPPVQQVPPLSTAKPT 260

Query: 424 LPSALPGKAPVSQ 436
            PSA    AP+  
Sbjct: 261 PPSASATPAPIGG 273

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 25/94 (26%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 281 NTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPP 340
           +T   PA     T P PA+    T     +    TAP PA  P   A    S  +N    
Sbjct: 167 STTTDPA-----TTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPS-QANVDTA 220

Query: 341 PASHSSKTAPPPASHPSNTALPPASHPSNPAIPP 374
                +  A P  + P  T     +  S PA  P
Sbjct: 221 ATPAPAAPATPDGAAPLPTD---QAGVSTPAADP 251

Length = 331

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.0 bits (104), Expect = 4e-04
 Identities = 28/115 (24%), Positives = 34/115 (29%), Gaps = 6/115 (5%)

Query: 64  SPIELPTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAP 123
           S    P     P    P+ +P   A +A    +P  S     P A      A  P    P
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAA-SPSPSQSSAAAQPSAPQS---ATQPAGTPP 425

Query: 124 PPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAA 178
             S+ P   V   PP TAP  V               S +SS       P    A
Sbjct: 426 TVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPV--SKVSSLGPSTLRPIQEKA 478

Length = 614

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 44.0 bits (103), Expect = 4e-04
 Identities = 61/361 (16%), Positives = 93/361 (25%), Gaps = 11/361 (3%)

Query: 69  PTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSLI 128
            T S      +    P            PP S  PT   A P S T     +   P    
Sbjct: 428 TTKSVIFVYTLVHVEPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTS 487

Query: 129 PTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNT 188
           PT+   S  P           +P+   TTP A+  +++        ++         +  
Sbjct: 488 PTSRTTSATPNA--------TSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTA 539

Query: 189 ARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSN 248
             PP    S            + + +   P   S PS       +    T   P S    
Sbjct: 540 TSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPG 599

Query: 249 TAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPP 308
                 S P   S       +   P    + +   P   S    +   P   P  T+   
Sbjct: 600 IPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVS 659

Query: 309 ASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPS 368
               S+T+  P         P    P+ T+P   S      P   S              
Sbjct: 660 GPGNSSTSRYPGEVHVTEGMPN---PNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSG 716

Query: 369 NPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSAL 428
           +  +   S  +N      +  + T     S  S            +      VPV P+  
Sbjct: 717 STLMASTSPHTNEGAFRTTPYNATTYLPPSTSSKLRPRWTFTSPPVTTKQATVPVPPTQH 776

Query: 429 P 429
           P
Sbjct: 777 P 777

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 44.0 bits (103), Expect = 4e-04
 Identities = 65/363 (17%), Positives = 107/363 (29%), Gaps = 25/363 (6%)

Query: 115 APPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPP 174
           AP           + T     P   TA P    LP  S  PT   A P S     P    
Sbjct: 425 APDTTKSVI---FVYTLVHVEPHKTTAVPTTPSLPPASTGPTVSTADPTSGT---PTGTT 478

Query: 175 SNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASL 234
           S+      S  S T     +  S T      + ++      +    A+ P+    P    
Sbjct: 479 SSTLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKTSDTPNATSPT----PIVIG 534

Query: 235 PSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPP-----ASHPSNTAPPPASH 289
            + TA  P +  ++     +    + SP+  ++       P     A          +  
Sbjct: 535 VTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPT 594

Query: 290 PSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPAS----HPSNTAP-PPASH 344
             +   P +SH +  +   ++ P  T+  P    + T   P+     H S  +P P    
Sbjct: 595 SQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGT 654

Query: 345 SSKTAPPPAS----HPSNTALPPASHPSNPAIPPASHPSNTAIPPAS-HPSNTAPPHASH 399
           +S+ + P  S    +P    +       N   P A     TA+P  +             
Sbjct: 655 TSQVSGPGNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKET 714

Query: 400 PSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAATPRGNFHRHSPA 459
             +T +   S  +N            + LP        P     +P  T +       P 
Sbjct: 715 SGSTLMASTSPHTNEGAFRTTPYNATTYLPPSTSSKLRPRWTFTSPPVTTKQATVPVPPT 774

Query: 460 IHP 462
            HP
Sbjct: 775 QHP 777

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 6e-04
 Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 3/102 (2%)

Query: 61  HAPSPIELPTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPS---ITAPP 117
              +        A  P    S   + PA + P  +A P +  P    A+ P+   +   P
Sbjct: 392 APVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAP 451

Query: 118 PVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPL 159
           P   AP    IP      P   +A P     PA + +  T  
Sbjct: 452 PAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493

Length = 618

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 43.5 bits (102), Expect = 6e-04
 Identities = 74/389 (19%), Positives = 105/389 (26%), Gaps = 27/389 (6%)

Query: 308 PASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHP 367
           P   PS   PP A+   +  PP  S  +         +     P    P +    P+ HP
Sbjct: 175 PQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHP 234

Query: 368 SNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSA 427
                P       TA   +  P   +  H     +    P  H     P  L  P     
Sbjct: 235 QRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPP 294

Query: 428 LPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSMPGPLPPVAQKRNASNREAPIAEP 487
            P     SQ P      P   P             S   P  P  ++        P  +P
Sbjct: 295 QPFGLAQSQVP------PLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKP 348

Query: 488 IAPGPFPPGNSRQKSPVARPIIPGGTPTASPDPDVPPSTPPLSVDGKRVGKPVAEPSYDI 547
               P P   ++          P   P    +   PP+  PLS                 
Sbjct: 349 PPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLS----------------- 391

Query: 548 PMPPPVNHSPSKAPSTHKYMRHSNHSPLPPFSSPKPPQNNGNDTPVSSPLASFPKHRDVR 607
               P +H PS  P   + M  S      P   P   Q+       S+   S       +
Sbjct: 392 --SLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQ 449

Query: 608 NKIASSPAPSYFISPTTSIHQGPVVPPSFIPTSRKRHYGPPPLNSVSPSHSPLPTPVSRV 667
           +  A  P  S  +         P   P+  P +       PP +++  S           
Sbjct: 450 SPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSG--SQPPGSALPSSGGCAGPGPPLP 507

Query: 668 PTSPSPSPTSASGQTELPLLPPKSSPSEP 696
           P      P   + + E P  PP+S   EP
Sbjct: 508 PIQIKEEPLDEAEEPESPPPPPRSPSPEP 536

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 43.0 bits (102), Expect = 6e-04
 Identities = 27/121 (22%), Positives = 39/121 (32%), Gaps = 4/121 (3%)

Query: 319 PASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHP 378
             S  +  APP A+ P+   PPPA  +      PA+  +  A     H            
Sbjct: 44  ADSDLAALAPPAAAAPAAAQPPPA-AAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLV 102

Query: 379 SNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQSP 438
           +  A P A      A P     +  A    +  +  AP P    V   A    A   ++ 
Sbjct: 103 ARAAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRP---RVPADAAAAVADAVKAR 159

Query: 439 I 439
           I
Sbjct: 160 I 160

Length = 484

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 42.7 bits (101), Expect = 6e-04
 Identities = 16/87 (18%), Positives = 30/87 (34%)

Query: 248 NTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPP 307
           +T   PA+ P   +P+  +  +   P  A+ P+    P  +     +       +  AP 
Sbjct: 167 STTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPA 226

Query: 308 PASHPSNTAPPPASHPSNTAPPPASHP 334
             + P   AP P      + P    + 
Sbjct: 227 APATPDGAAPLPTDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 6e-04
 Identities = 24/104 (23%), Positives = 30/104 (28%), Gaps = 9/104 (8%)

Query: 289 HPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKT 348
                 P     P  T P  A  PS  A    S   ++A    S     AP  A+     
Sbjct: 369 ASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPS-----APQSAT-QPAG 422

Query: 349 APPPASH--PSNTALPPASHPSNPAIPPASHPSNTAIPPASHPS 390
            PP  S   P+   + P S       P         IP +   S
Sbjct: 423 TPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKK-IPVSKVSS 465

Length = 614

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 43.3 bits (103), Expect = 7e-04
 Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 7/89 (7%)

Query: 319 PASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHP 378
           P S  + TA   A+  + +AP  A  +   A P  +       PPA+        PA+  
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPA-------PPAAAAPAAPPKPAAAA 90

Query: 379 SNTAIPPASHPSNTAPPHASHPSNTALTP 407
           +  A P A   +  A   A+      +TP
Sbjct: 91  AAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.9 bits (101), Expect = 7e-04
 Identities = 28/99 (28%), Positives = 34/99 (34%), Gaps = 7/99 (7%)

Query: 210 TALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPS 269
             L    AP PA        P A+ PS   P PA      A   A+ P K      + P 
Sbjct: 358 ALLVPVPAPQPAK-------PTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPP 410

Query: 270 KTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPP 308
              P P + P    P  A   ++ A P    P  T P P
Sbjct: 411 PVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAP 449

Length = 585

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 42.7 bits (101), Expect = 7e-04
 Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 1/81 (1%)

Query: 276 ASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPS 335
            +    T P PA+    T P  +  P+    P  +         A   +N        P+
Sbjct: 168 TTTDPATTPAPAAPVD-TTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPA 226

Query: 336 NTAPPPASHSSKTAPPPASHP 356
             A P  +    T     S P
Sbjct: 227 APATPDGAAPLPTDQAGVSTP 247

Length = 331

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 7e-04
 Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 8/107 (7%)

Query: 191 PPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTA 250
                P +   P  + P+    PS  A + +  PS ++         +AP  A+  + T 
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPS-AAAAASPSPSQSSAAAQP----SAPQSATQPAGTP 424

Query: 251 PPPASHPYKTSPL-PASHPSKTAPPPASHPSNTAPPPASHPSKTAPP 296
           P  +  P    P+ P S   +   P           P S  S   P 
Sbjct: 425 PTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEK--KIPVSKVSSLGPS 469

Length = 614

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 43.0 bits (102), Expect = 8e-04
 Identities = 17/86 (19%), Positives = 31/86 (36%)

Query: 210 TALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPS 269
            +  + TA + A+  + +A   A      A P  +  +  AP     P   +   A+  +
Sbjct: 39  GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAA 98

Query: 270 KTAPPPASHPSNTAPPPASHPSKTAP 295
             A   A+ P+  A      P + A 
Sbjct: 99  PPAAAAAAAPAAAAVEDEVTPLRGAA 124

Length = 1228

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.0 bits (102), Expect = 8e-04
 Identities = 50/237 (21%), Positives = 68/237 (28%), Gaps = 55/237 (23%)

Query: 68  LPTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSL 127
           LP+       N  + +  TPA +     AP     P    A+      P   +   P   
Sbjct: 360 LPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPA 419

Query: 128 IPTT--PVASPPPITAPPLVN-------VLPAPSLIPTTPLAS----------------- 161
            PT   P        APP +N       +L    L  T  L S                 
Sbjct: 420 EPTEPSPTPPANAANAPPSLNLEELWQQILAKLELPSTRMLLSQQAELVSLDSNRAVIAV 479

Query: 162 ------------PLSSKAF----------------PPASPPSNAARPPASHPSNTAR-PP 192
                       PL  +AF                  AS  +    PP   P   A  PP
Sbjct: 480 SPNWLGMVQSRKPLLEQAFAKVLGRSIKLNLESQSGSASNTAKTPPPPQKSPPPPAPTPP 539

Query: 193 ASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNT 249
              P+ TAPPP   P        ++ +PA  P++++ PP      T  P        
Sbjct: 540 LPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.8 bits (101), Expect = 0.001
 Identities = 36/144 (25%), Positives = 50/144 (34%), Gaps = 24/144 (16%)

Query: 331 ASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPS 390
           A  P+  A   A    KT   P +     A P A+  +  A  PA        P A+  +
Sbjct: 363 AFKPAAAAEAAAPAEKKTPARPEA-----AAPAAAPVAQAAAAPAPAA----APAAAASA 413

Query: 391 NTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAAT-P 449
             APP            A+ P+ +A P       P+A P  AP + +    P A AA   
Sbjct: 414 PAAPP-----------AAAPPAPVAAPA---AAAPAAAPAAAPAAVALAPAPPAQAAPET 459

Query: 450 RGNFHRHSPAIHPSMPGPLPPVAQ 473
                R +P    +   P P  A 
Sbjct: 460 VAIPVRVAPEPAVASAAPAPAAAP 483

Length = 618

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 43/276 (15%), Positives = 57/276 (20%), Gaps = 28/276 (10%)

Query: 307 PPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASH 366
                   +       P  +    ++ P          S     P          P A  
Sbjct: 86  SVGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPEPQP----PQAPE 141

Query: 367 PSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPS 426
                  PA    +     A        P    P    L     P   A P    P  P 
Sbjct: 142 SQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPP 201

Query: 427 A---LPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSMPGPLPPVAQKRNASNREAP 483
                P   P    P     AP+  P        P   P  P PL               
Sbjct: 202 GYPQPPQGHPEQVQPQQFLPAPSQAPAQ---PPLPPQLPQQPPPLQQPQF-------PGL 251

Query: 484 IAEPIAPGPFPPGNSRQKSPVARPIIPGGTPTASPDPDVPPSTPPLSVDGKRVGKPVAEP 543
             +   P P PP   +Q         P   PT  P      + P           P  +P
Sbjct: 252 SQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPL---------PPPQQP 302

Query: 544 SYDIPMPPPVNHSPSKAPSTHKYMRHSNHSPLPPFS 579
                +  P        P   + +   +       S
Sbjct: 303 QLLPLVQQPQGQQR--GPQFREQLVQLSQQQREALS 336

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 26/133 (19%), Positives = 39/133 (29%), Gaps = 5/133 (3%)

Query: 337 TAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPH 396
             P P     +         +N+        ++PA    S P +++    S PS    P 
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205

Query: 397 ASHPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQSPISLP-----DAPAATPRG 451
           +   S+    P+S  S+  PP    P  PS  PG A     P+          P      
Sbjct: 206 SPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSAS 265

Query: 452 NFHRHSPAIHPSM 464
                   I    
Sbjct: 266 ATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 11/93 (11%)

Query: 192 PASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAP 251
           P S  + TA   A+  + +A  +  A    + P     PPA+      P PA+  +  A 
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAP--APAPPAAAAPAAPPKPAAAAAAAAA 95

Query: 252 PPASHPYKTSPLPASHPSKTAPPPASHPSNTAP 284
           P A         P +  +  AP  A+      P
Sbjct: 96  PAA---------PPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 42.2 bits (100), Expect = 0.001
 Identities = 20/86 (23%), Positives = 35/86 (40%)

Query: 155 PTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPS 214
            +T   +  ++ A   AS P+ A    A      A P A+ P+    P A+  +  A  +
Sbjct: 39  GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAA 98

Query: 215 KTAPSPASHPSNTALPPASLPSKTAP 240
             A + A+ P+  A+     P + A 
Sbjct: 99  PPAAAAAAAPAAAAVEDEVTPLRGAA 124

Length = 1228

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 23/110 (20%), Positives = 33/110 (30%), Gaps = 6/110 (5%)

Query: 203 PASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPA--SHPYKT 260
             S  +  A P+  AP+ A  P   A    S P+  A  PA  L   A            
Sbjct: 44  ADSDLAALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVA 103

Query: 261 SPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPAS 310
                + P   AP   +  +           + A   A+ P    P  A+
Sbjct: 104 RAAAPAAPEAQAPAAPAERAAAENAAR----RLARAAAAAPRPRVPADAA 149

Length = 484

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 41.9 bits (99), Expect = 0.001
 Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 6/103 (5%)

Query: 230 PPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASH 289
           PPA+     A PP +        PA+   + +P    H  +         +  A P A  
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAPE 112

Query: 290 PSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPAS 332
               AP   +  +             A   A+ P    P  A+
Sbjct: 113 A--QAPAAPAERAAAENAAR----RLARAAAAAPRPRVPADAA 149

Length = 484

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 26/93 (27%), Positives = 31/93 (33%), Gaps = 7/93 (7%)

Query: 305 APPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPAS--HPSNTALP 362
            P PA  P   A P A+ PS   P PA  PS      A+ +     P      P      
Sbjct: 361 VPVPAPQP---AKPTAAAPSPVRPTPA--PSTRPKAAAAANIPPKEPVRETATPPPVPPR 415

Query: 363 PASHPSNPAIPPASHPSNTAIPPASHPSNTAPP 395
           P + P       A   +  AIP    P  T P 
Sbjct: 416 PVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPA 448

Length = 585

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 41.9 bits (99), Expect = 0.001
 Identities = 20/104 (19%), Positives = 28/104 (26%), Gaps = 17/104 (16%)

Query: 209 NTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHP 268
           +T     T P+PA+    T     +    TAP PA      A    S             
Sbjct: 167 STTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPS------------- 213

Query: 269 SKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHP 312
                      +  AP   + P   AP P      + P    + 
Sbjct: 214 ----QANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 6/86 (6%)

Query: 238 TAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPP 297
           T P PA+ +  T     +    T+P PA  P + A      PS      A+ P   AP  
Sbjct: 174 TTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVA---PSQANVDTAATP---APAA 227

Query: 298 ASHPSNTAPPPASHPSNTAPPPASHP 323
            + P   AP P      + P    + 
Sbjct: 228 PATPDGAAPLPTDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 11/101 (10%)

Query: 219 SPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASH 278
           S    P     P  + P+    P A+  ++ +P  +S               +AP  A+ 
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAA----------AQPSAPQSATQ 419

Query: 279 PSNTAPPPASHPSKTAP-PPASHPSNTAPPPASHPSNTAPP 318
           P+ T P  +  P    P  P S       P         P 
Sbjct: 420 PAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPV 460

Length = 614

>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional

 Score = 42.4 bits (99), Expect = 0.001
 Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 13/142 (9%)

Query: 219 SPASHPSNTALPPASLPSKTAP---PPASHLSNTAPPPASHPYKTSPL---PASHPSKTA 272
           +  S+P N+     + P+   P   PP S+   + PP ++ PY   P    P S+   + 
Sbjct: 412 AGYSNPGNSNPGYNNAPNSNTPYNNPPNSNTPYSNPPNSNPPYSNLPYSNTPYSNAPLSN 471

Query: 273 PPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPAS 332
            PP+S   + +   A++  + A  PA++       P ++         +  ++   P AS
Sbjct: 472 APPSSAKDHHSAYHAAYQHRAANQPAANL------PTANQPAANNFHGAAGNSVGNPFAS 525

Query: 333 HPSNTAPPPASHSSKTAPPPAS 354
            P  +A P   +++ TA P   
Sbjct: 526 RPFGSA-PYGGNAATTADPNGI 546

Length = 1560

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.3 bits (100), Expect = 0.001
 Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 2/80 (2%)

Query: 263 LPASHPSKTAPPPASHPSN--TAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPA 320
             AS+ +KT PPP   P      PP     +   PP    P  TA   +S+     P  +
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574

Query: 321 SHPSNTAPPPASHPSNTAPP 340
           S P      P   P+  + P
Sbjct: 575 SPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.3 bits (100), Expect = 0.001
 Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 2/83 (2%)

Query: 269 SKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAP 328
           S +A   A  P      P   P    PP     +   PP    P  TA   +S+     P
Sbjct: 514 SGSASNTAKTPPPPQKSPP--PPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP 571

Query: 329 PPASHPSNTAPPPASHSSKTAPP 351
             +S P      P    +K + P
Sbjct: 572 ADSSPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.3 bits (100), Expect = 0.001
 Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 2/80 (2%)

Query: 285 PPASHPSKTAPPPASHPSN--TAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPA 342
             AS+ +KT PPP   P      PP     +   PP    P  TA   +S+     P  +
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574

Query: 343 SHSSKTAPPPASHPSNTALP 362
           S        P   P+  + P
Sbjct: 575 SPPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 42.3 bits (99), Expect = 0.001
 Identities = 27/93 (29%), Positives = 34/93 (36%), Gaps = 6/93 (6%)

Query: 225 SNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAP 284
           S T +PP   P + AP P   L  T      H ++ +P P   P+   P       N A 
Sbjct: 168 SGTYIPPN--PPREAPAPG--LPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQ 223

Query: 285 PPASHPSKTAPPPASHPSNTAPPPASHPSNTAP 317
            P   P +    PA  P  T   PA  P  T  
Sbjct: 224 QPQQQPQQQPVQPAQQP--TPQNPAQQPPQTEQ 254

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 42.2 bits (98), Expect = 0.001
 Identities = 49/153 (32%), Positives = 68/153 (44%), Gaps = 14/153 (9%)

Query: 265 ASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPA---SHPSNTAPPPA---SHPSNTAPP 318
           A+   K A   A+ PS      A+ P+K A  PA   + P+  A  PA   + P+  A P
Sbjct: 197 AAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAP 256

Query: 319 PA---SHPSNTAPPPASHPSNTAPPPASHSSKTAPPP--ASHPSNTALPPASHPSNPAIP 373
           PA   + P+  A PPA   +  A   A  +   APP   A+ P+  A  PA   + PA  
Sbjct: 257 PAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPA-K 315

Query: 374 PASHPSNTAIPPASHPSNTAPPHASHPSNTALT 406
            A+ P+  A PPA   + T P  A+ P   A  
Sbjct: 316 AAAPPAKAAAPPAK--AATPPAKAAAPPAKAAA 346

Length = 357

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.1 bits (99), Expect = 0.002
 Identities = 28/161 (17%), Positives = 36/161 (22%), Gaps = 6/161 (3%)

Query: 51  FTLKPHLLGGHAPSPIELPTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASP 110
              +        P    LP    P     P   P  P     +   P        P    
Sbjct: 163 LQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGP--PEQPPGYPQPPQGHPEQVQPQQFL 220

Query: 111 PSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPP 170
           P+ +  P     P P  +P  P     P        + P P   P      P      PP
Sbjct: 221 PAPSQAPA--QPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPP 278

Query: 171 ASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTA 211
            + P+     P     N   PP   P               
Sbjct: 279 QNQPTPHPGLPQG--QNAPLPPPQQPQLLPLVQQPQGQQRG 317

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 28/138 (20%), Positives = 34/138 (24%), Gaps = 6/138 (4%)

Query: 102 IPTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLAS 161
            P  P+            N           P ++ P         V   PS        S
Sbjct: 149 NPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPS 208

Query: 162 PLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPA 221
             S    PPA     +  PP S  S       S P   A PP          S   P+P 
Sbjct: 209 DSSL---PPAPSSFQSDTPPPSPESP---TNPSPPPGPAAPPPPPVQQVPPLSTAKPTPP 262

Query: 222 SHPSNTALPPASLPSKTA 239
           S  +  A          A
Sbjct: 263 SASATPAPIGGITLDDDA 280

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.8 bits (99), Expect = 0.002
 Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 6/83 (7%)

Query: 191 PPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTA 250
              + P+  A   A+  S  A         A  P+  A    + P K A   A      A
Sbjct: 39  GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAA------A 92

Query: 251 PPPASHPYKTSPLPASHPSKTAP 273
               + P   +   A   +    
Sbjct: 93  AAAPAAPPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 41.9 bits (99), Expect = 0.002
 Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 6/104 (5%)

Query: 141 APPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTA 200
           APP      A       P  +   +    PA+P +  A     H            +R A
Sbjct: 52  APPAAAAPAAAQ-----PPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAA 106

Query: 201 PPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPAS 244
            P A      A P++ A +  +     A   A+ P    P  A+
Sbjct: 107 APAAPEAQAPAAPAERAAAENA-ARRLARAAAAAPRPRVPADAA 149

Length = 484

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 2/100 (2%)

Query: 298 ASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPS 357
           A      AP PA   +    P    P+ +  P A+  +N  P      + T PP    P 
Sbjct: 358 ALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPV 417

Query: 358 NTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHA 397
              +P     S P +  A+ P +   P  + P+       
Sbjct: 418 APPVPHTP-ESAPKLTRAAIPVDEK-PKYTPPAPPKEEEK 455

Length = 585

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 41.1 bits (95), Expect = 0.002
 Identities = 53/170 (31%), Positives = 71/170 (41%), Gaps = 25/170 (14%)

Query: 167 AFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSN 226
           A   A+    AA   A+ PS      A+ P++ A  PA   +  A  +      A+ P+ 
Sbjct: 193 AAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAK 252

Query: 227 TALPPA---SLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTA 283
            A PPA   + P+K A PPA      A PPA          A+ P+K A PPA       
Sbjct: 253 AAAPPAKAAAPPAKAAAPPA----KAAAPPAK--------AAAPPAKAAAPPAK------ 294

Query: 284 PPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPP--PASHPSNTAPPPA 331
              A+ P+K A  PA   +  A   A      APP   A+ P+  A PPA
Sbjct: 295 --AAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAPPA 342

Length = 357

>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566)

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 29/141 (20%), Positives = 39/141 (27%), Gaps = 11/141 (7%)

Query: 203 PASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSP 262
            AS  S +   S  A SP S           L S      AS        PAS P  +  
Sbjct: 2   AASVSSGS--TSGDASSPRS------SSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPA 53

Query: 263 LPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASH 322
              S  S       S    ++       S+   P    PS  A    S  + +    +S 
Sbjct: 54  RNTSSSSSFGL---SKQRPSSLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSP 110

Query: 323 PSNTAPPPASHPSNTAPPPAS 343
             +     +   S   P   S
Sbjct: 111 SRSRRTTSSDLSSGNGPSVLS 131

Family of related proteins that is plant specific. Length = 313

>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566)

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 4/131 (3%)

Query: 160 ASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPS 219
           AS  S      AS P +++R      S+     AS   R    PAS PS++   + ++ S
Sbjct: 3   ASVSSGSTSGDASSPRSSSR--RRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSS 60

Query: 220 PA--SHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPAS 277
               S    ++L    L S+   P     S  A    S    ++   +S         + 
Sbjct: 61  SFGLSKQRPSSLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTTSSD 120

Query: 278 HPSNTAPPPAS 288
             S   P   S
Sbjct: 121 LSSGNGPSVLS 131

Family of related proteins that is plant specific. Length = 313

>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed

 Score = 41.6 bits (97), Expect = 0.002
 Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 10/119 (8%)

Query: 130 TTPVASPPPITA-------PPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPA 182
           T PVA+  P +A        P    +P+P++IP++      ++      +  S    P  
Sbjct: 298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSD 357

Query: 183 SHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPP 241
                T   PA+ P    P P S        +    S A+ P+ T+LP A  P+   P 
Sbjct: 358 VTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPT-TSLPAA--PASNIPV 413

Length = 421

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.6 bits (97), Expect = 0.002
 Identities = 47/227 (20%), Positives = 72/227 (31%), Gaps = 24/227 (10%)

Query: 150 APSLIPTTPLASPLSSKAFPPAS-------PPSNAARPPASHPSNTARPPASHPSRTAPP 202
           A ++I  T L SP +  A    +       P +  A+ P    S  A P      +TA P
Sbjct: 368 ANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEG---KTAGP 424

Query: 203 PASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSP 262
            ++  +N   P + AP  A     TA   A   +K+        S    PP +   K   
Sbjct: 425 VSNQENNDVPPWEDAPDEAQ----TAAGTAQTSAKSI----QTASEAETPPENQVSKNKA 476

Query: 263 LPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASH 322
                 +  +  P+ +P    P   +  ++T    A             P N  PP    
Sbjct: 477 ADNETDAPLSEVPSENPIQATPNDEAVETETFAHEAPAE---PFYGYGFPDNDCPP---E 530

Query: 323 PSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSN 369
                PPP    +  A      + + A       +NT   P    S 
Sbjct: 531 DGAEIPPPDWEHAAPADTAGGGADEEAEAGGIGGNNTPSAPPPEFST 577

Length = 709

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 280 SNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAP 339
                PP++      P   +     APPPA+ P      PA  P+   P PA  P   A 
Sbjct: 379 RGAPAPPSAAWGAPTPAAPA-----APPPAAAPPVPPAAPAR-PAAARPAPAPAPPAAAA 432

Query: 340 PPASHSSKTAPP 351
           PPA  +   A  
Sbjct: 433 PPARSADPAAAA 444

Length = 576

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.5 bits (97), Expect = 0.003
 Identities = 57/236 (24%), Positives = 76/236 (32%), Gaps = 25/236 (10%)

Query: 507  PIIPGGTPTASPDPDVPPST----PPLSVDGKRVGKPVAEPSYDIPMPPPVNHSPSKAPS 562
            P +P   P A+PD  VPP      P       R  +P A P    P  P  +    + P+
Sbjct: 2553 PPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPA 2612

Query: 563  THKYMRHSNHSPLPPFSSPKPPQNNGNDTPVSSPLASFPKHRDVRNKIASSPAPSYFISP 622
                +    H+P PP  SP P     N+     P    P  R         PAP     P
Sbjct: 2613 PPSPLPPDTHAPDPPPPSPSP---AANEPDPHPPPTVPPPERPRD-----DPAPGRVSRP 2664

Query: 623  TTSIHQGPVVPPSFIPTSRKRHYGPPPLNSVSPSHSPLPTP----------VSRVPTSPS 672
              +   G     S  P   +R    P + S++    P P P          VS  P  P 
Sbjct: 2665 RRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPG 2724

Query: 673  PSPTSASGQTELPLLPPKSSPSEPIRAFPPPPPNADCSTTICTEPYTNTPPGSPCG 728
            P   +A+ Q    L    + P+ P     P  P           P    PP +P  
Sbjct: 2725 P---AAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAA 2777

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.5 bits (97), Expect = 0.003
 Identities = 58/229 (25%), Positives = 80/229 (34%), Gaps = 22/229 (9%)

Query: 55  PHLLGGHAPSPIELPTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVA-SPPSI 113
           P ++G  A    E    +  PP          P  +AP   A PP  +    +A +P ++
Sbjct: 258 PPVVGEGADRAPETARGATGPP--------PPPEAAAPNGAAAPPDGVWGAALAGAPLAL 309

Query: 114 TAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASP 173
            APP     PPP               A  +V+ LP P              +  P  +P
Sbjct: 310 PAPPD----PPPPAPAGDAEEEDDEDGAMEVVSPLPRPR----QHYPLGFPKRRRPTWTP 361

Query: 174 PSNAARPPASHPSNTARPPASHPSRTAP----PPASHPSNTALPSKTAPSPASHPSNTAL 229
           PS+     A           +   R+A     P A  P         AP PAS P+    
Sbjct: 362 PSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPT 421

Query: 230 P-PASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPAS 277
           P PAS P   A P  S    +   PA  P +  P PA+ P+   P  A+
Sbjct: 422 PVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDAT 470

Length = 3151

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 23/133 (17%), Positives = 35/133 (26%), Gaps = 13/133 (9%)

Query: 90  SAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLP 149
           +         S    +   +  S + PP  +   P    P    +SP   + PP      
Sbjct: 161 ADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPP------ 214

Query: 150 APSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSN 209
           APS   +        S   P   P   A  PP            + P+     P S  + 
Sbjct: 215 APSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVP--PLSTAKPT-----PPSASAT 267

Query: 210 TALPSKTAPSPAS 222
            A          +
Sbjct: 268 PAPIGGITLDDDA 280

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.4 bits (98), Expect = 0.003
 Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 3/77 (3%)

Query: 311 HPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNP 370
            P +TA P A   +  A   A+     AP   + ++    PPA+        PA+  +  
Sbjct: 37  GPGSTAAPTA---AAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA 93

Query: 371 AIPPASHPSNTAIPPAS 387
           A P A   +  A  PA+
Sbjct: 94  AAPAAPPAAAAAAAPAA 110

Length = 1228

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 0.003
 Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 6/89 (6%)

Query: 103 PTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASP 162
              PV + P+  A P  + A   S  P+   A+  P            P   PT  +  P
Sbjct: 378 HIKPVFTQPA--AAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTP---PTVSVDPP 432

Query: 163 LSSKAFPPASPPSNAARPPASHPSNTARP 191
            +    PP++ P  A RP           
Sbjct: 433 AAVPVNPPSTAP-QAVRPAQFKEEKKIPV 460

Length = 614

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.2 bits (96), Expect = 0.003
 Identities = 34/111 (30%), Positives = 43/111 (38%), Gaps = 10/111 (9%)

Query: 250 APPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPA 309
           A  PAS    T P P +   +   P A    ++A P    PS  A P    P + APP  
Sbjct: 386 AEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPS--AAPSPRVPWDDAPP-- 441

Query: 310 SHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTA 360
                 APP +  P   AP           P +  S+  APP    PS+TA
Sbjct: 442 ------APPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTA 486

Length = 624

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.8 bits (95), Expect = 0.003
 Identities = 39/140 (27%), Positives = 51/140 (36%), Gaps = 14/140 (10%)

Query: 262 PLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPAS 321
           P+ +  PS       S   + A  PAS  + T P P +       P A    ++A P   
Sbjct: 367 PVESLRPSGGGASAPS--GSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATP 424

Query: 322 HPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNT 381
            PS  A P    P + APP    S     P    P  + +P A         P S  S +
Sbjct: 425 APS--AAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEASPVPGA---------PDSVASAS 473

Query: 382 AIPPA-SHPSNTAPPHASHP 400
             PP    PS+TA    S P
Sbjct: 474 DAPPTLGDPSDTAEHTPSGP 493

Length = 624

>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1 family)

 Score = 41.0 bits (96), Expect = 0.003
 Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 32/191 (16%)

Query: 257 PYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTA 316
           PY ++         + P    +  N        PS    P  +  S            + 
Sbjct: 460 PYGSTESSV----PSTPSTRRNDRNITSN---TPSLKRTPNLTKSSL-------SQEASL 505

Query: 317 PPPASHPSNTAPPPASHPSNTAPPPASHSSK-TAPPPASHPSNTALPPASHPSNPAIPPA 375
              ++  ++    P    +    P AS SSK       ++ + ++   +    N   P  
Sbjct: 506 ISKSTGNTHKHSTPRRLTTLPKLPAASRSSKGNLIRSGANGNASSDLSSPGSINSKSPEH 565

Query: 376 SHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPVS 435
           S P              +     H      TP+++           P+        +P  
Sbjct: 566 SVPLVR---VFDIHLRASTTKGRH-----STPSTNEKKKRLLKR-SPL--------SPPK 608

Query: 436 QSPISLPDAPA 446
           +S  + P   +
Sbjct: 609 ESVATTPRLNS 619

Length = 619

>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1 family)

 Score = 41.0 bits (96), Expect = 0.003
 Identities = 35/160 (21%), Positives = 57/160 (35%), Gaps = 15/160 (9%)

Query: 392 TAPPHASHPSNTALTPA--SHPSNIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAATP 449
             PP+ S  S+   TP+   +  NI            +L     +++S +S   +  +  
Sbjct: 457 MEPPYGSTESSVPSTPSTRRNDRNITSNT-------PSLKRTPNLTKSSLSQEASLISKS 509

Query: 450 RGNFHRHSPAIHPSMPGPLPPVAQKRNASNREAPIAEPIAPGPFP-PGNSRQKSPV--AR 506
            GN H+HS     +   P  P A + +  N     A   A      PG+   KSP     
Sbjct: 510 TGNTHKHSTPRRLTT-LPKLPAASRSSKGNLIRSGANGNASSDLSSPGSINSKSPEHSVP 568

Query: 507 PIIPGGTPTASPDPDVPPSTPPLSVDGKRVGK--PVAEPS 544
            +        +       STP  +   KR+ K  P++ P 
Sbjct: 569 LVRVFDIHLRASTTKGRHSTPSTNEKKKRLLKRSPLSPPK 608

Length = 619

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.1 bits (97), Expect = 0.003
 Identities = 17/88 (19%), Positives = 25/88 (28%), Gaps = 5/88 (5%)

Query: 276 ASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPS 335
            S   +     ++  + T  P  S P     P A          A+   +  P  AS P 
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSA-----PKTKQAATTPSPPPAKASPPI 415

Query: 336 NTAPPPASHSSKTAPPPASHPSNTALPP 363
                P   S       A+ P +  L  
Sbjct: 416 PVPAEPTEPSPTPPANAANAPPSLNLEE 443

Length = 620

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 40.7 bits (94), Expect = 0.003
 Identities = 47/165 (28%), Positives = 65/165 (39%), Gaps = 19/165 (11%)

Query: 211 ALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSK 270
           A   K A   A+ PS      A+ P+K A  PA   +   P  A+     +    +  + 
Sbjct: 198 AAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAK--AAAPPAKAAAAPAKAAAAPAKAAA 255

Query: 271 TAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPP--ASHPSNTAPPPASHPSNTAP 328
                A+ P+  A PPA   +  A   A      APP   A+ P+  A  PA        
Sbjct: 256 PPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAK------- 308

Query: 329 PPASHPSNTAPPPASHSSKTAPPP---ASHPSNTALPPASHPSNP 370
             A+ P+  A PPA    K A PP   A+ P+  A PPA   + P
Sbjct: 309 -AAAAPAKAAAPPA----KAAAPPAKAATPPAKAAAPPAKAAAAP 348

Length = 357

>gnl|CDD|218056 pfam04388, Hamartin, Hamartin protein

 Score = 41.1 bits (96), Expect = 0.003
 Identities = 37/139 (26%), Positives = 48/139 (34%), Gaps = 6/139 (4%)

Query: 182 ASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPP 241
            S   ++A P +S      PP  S P NT+       +  S   NT    A+        
Sbjct: 274 YSFSRSSAYPNSSPRQAL-PPSISLPQNTSTSGSLHSAQTSRRPNTTFDKAASSGTKDSL 332

Query: 242 -PASHLSNTAPPPASHPYKTSPLPA--SHPSKTAPPPASHPSNTAPPPASHPSKTAPPPA 298
              S L   A PP+S       L    SH S  AP          P   S PS T+PPP 
Sbjct: 333 WSPSSLCGMATPPSSIGMSPLILSLSPSHLSGRAPGTTG-SGKGEPASESTPS-TSPPPP 390

Query: 299 SHPSNTAPPPASHPSNTAP 317
               +      +  S +AP
Sbjct: 391 GLADDIVRAIFATSSRSAP 409

This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein pfam03542. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterized by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation either TSC1 or TSC2 tumour suppressor gene. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin pfam03542. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking. Length = 667

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 24/122 (19%), Positives = 36/122 (29%), Gaps = 2/122 (1%)

Query: 442 PDAPAATPRGNFHRHSPAIHPSMPGPLPPVAQKRNASNREAPIAEPIAPGPFPPGNSRQK 501
                A      H++ P    + P    PV Q   A         P  P P P      +
Sbjct: 78  AQEHEAARPSPQHQYQPPYASAQPRQ--PVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQ 135

Query: 502 SPVARPIIPGGTPTASPDPDVPPSTPPLSVDGKRVGKPVAEPSYDIPMPPPVNHSPSKAP 561
               +P+    +P  +P P    S P  +    +  +PVA P  +    P       K  
Sbjct: 136 PQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPKRK 195

Query: 562 ST 563
             
Sbjct: 196 EA 197

Length = 333

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.6 bits (95), Expect = 0.004
 Identities = 38/200 (19%), Positives = 54/200 (27%), Gaps = 12/200 (6%)

Query: 406 TPASHPSNIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSMP 465
           T A+ P     P    P   +  P   P + +      A A        R SPA      
Sbjct: 376 TAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPA------ 429

Query: 466 GPLPPVAQKRNASNREAPIAEPIAPGPFPPGNSRQKSPVARPIIPGGTPTASPDPDVPPS 525
                +A  R AS R    A   AP P     +  +   A P        A+P    P +
Sbjct: 430 --PEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAA 487

Query: 526 TPPLSVDGKRVGKPVAEPSYDIPMPPPVNHSPSKAP-STHKYMRHSNHSPLPPFSSPKPP 584
            P  + D      P  E   +   P P     + A          +   P   F +  P 
Sbjct: 488 APAPADDDP---PPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPA 544

Query: 585 QNNGNDTPVSSPLASFPKHR 604
                    ++        R
Sbjct: 545 PAAAPAPRAAAATEPVVAPR 564

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.7 bits (96), Expect = 0.004
 Identities = 28/117 (23%), Positives = 39/117 (33%), Gaps = 4/117 (3%)

Query: 130 TTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTA 189
             P A+ P   A          +  P    A   ++    PA  P+ A  PP+   +  A
Sbjct: 392 GAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAP-QPAPAPAPAPAPPSPAGNAPA 450

Query: 190 RPPASHPSRTAPPPASHPSNTALPSKTA---PSPASHPSNTALPPASLPSKTAPPPA 243
               S P   AP     P+  A P  TA   P+P + P+  A P A           
Sbjct: 451 GGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGAD 507

Length = 824

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 40.6 bits (95), Expect = 0.004
 Identities = 38/208 (18%), Positives = 53/208 (25%), Gaps = 20/208 (9%)

Query: 102 IPTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLAS 161
           I  +P A  P+   PP       P L P            P   +  P        P A 
Sbjct: 86  ITVDPSAGEPA-PPPPHARRTSEPEL-PRPGRRPYEGYGGPRADDRPPGLPRQDQLPTAR 143

Query: 162 PLSSKAFPPASPPSNAARPPASHPSNTAR----PPASHPSRTAPPPASHPSNTALPSKTA 217
           P +  A+     P    R    +     R    P A + S  +  P         P    
Sbjct: 144 P-AYPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAP--EQERDREPYDAG 200

Query: 218 PSPASHPSNTALPPASLPSKTAPPPASHLSNT--APPPASHPYKTSPLPASHPSKTAPPP 275
                            P      P    ++    PP A H ++  P P         P 
Sbjct: 201 RPEYDQRR----RDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPI 256

Query: 276 ASHPSNTAP-PPASHPSKTAPPPASHPS 302
                 +AP P A+ P+    P      
Sbjct: 257 RP----SAPGPLAAQPAPAPGPGEPTAR 280

Length = 617

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 40.7 bits (95), Expect = 0.004
 Identities = 51/233 (21%), Positives = 79/233 (33%), Gaps = 14/233 (6%)

Query: 199 TAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPY 258
           TAP          +PS+  P   S   + A  P  +P+K   P A        PP     
Sbjct: 310 TAPLTPMEELLAKIPSQRVPPKES---DAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAV 366

Query: 259 KTSPLPASHPSKTAPPPASHP--SNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTA 316
              PL      +   PP S      ++ P +S        PA      +P  AS+     
Sbjct: 367 VPRPLSPYTAYEDLKPPTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVE 426

Query: 317 PPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPAS 376
           P      +    P + +       P +  S TAP      S +    +S P+ P   PA+
Sbjct: 427 PAQV--EAKKTRPLSPYARYEDLKPPTSPSPTAPTGV---SPSVSSTSSVPAVPDTAPAT 481

Query: 377 HPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALP 429
             ++ A PP ++      P + +     L P + PS  AP     P   + + 
Sbjct: 482 AATDAAAPPPANMR----PLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVV 530

Length = 576

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 40.7 bits (95), Expect = 0.004
 Identities = 50/213 (23%), Positives = 68/213 (31%), Gaps = 14/213 (6%)

Query: 63  PSPIELPTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSIT-------- 114
           P     P    PP        P +P  +A  D+ PP S IPT P +SP S          
Sbjct: 349 PEAPSPPIEEEPPQPKAVVPRPLSP-YTAYEDLKPPTSPIPTPPSSSPASSKSVDAVAKP 407

Query: 115 -APPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASP 173
             P  V      S +P    A        PL        L P T  +    +   P  S 
Sbjct: 408 AEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSS 467

Query: 174 PSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPAS 233
            S+    P + P+  A   A+ P     P + +     L   T+PSPA+     A     
Sbjct: 468 TSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPS--- 524

Query: 234 LPSKTAPPPASHLSNTAPPPASHPYKTSPLPAS 266
             +       +    TA     H  +  P P S
Sbjct: 525 -STNEVVKVGNSAPPTALADEQHHAQPKPRPLS 556

Length = 576

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.6 bits (95), Expect = 0.004
 Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 1/88 (1%)

Query: 155 PTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPS 214
              P  +  ++ A  P  P    +  P +  +    PP      TA PP   P   A P 
Sbjct: 363 VPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANI-PPKEPVRETATPPPVPPRPVAPPV 421

Query: 215 KTAPSPASHPSNTALPPASLPSKTAPPP 242
              P  A   +  A+P    P  T P P
Sbjct: 422 PHTPESAPKLTRAAIPVDEKPKYTPPAP 449

Length = 585

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.7 bits (96), Expect = 0.004
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 274 PPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASH 333
             AS+ + T PPP   P   AP P   P       A  P+   PPP +  +++  P    
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTP---PLPQPTATAPPPTPPPPPPTATQASSNAPAQI- 570

Query: 334 PSNTAPPPASHSSKTAPPPASHPSNT 359
           P++++PPP      T  P        
Sbjct: 571 PADSSPPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.7 bits (96), Expect = 0.004
 Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 1/82 (1%)

Query: 263 LPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASH 322
           L  S         ++  + T  P  S P     P A      A  P+  P   A PP   
Sbjct: 359 LLPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSP-PPAKASPPIPV 417

Query: 323 PSNTAPPPASHPSNTAPPPASH 344
           P+    P  + P+N A  P S 
Sbjct: 418 PAEPTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.8 bits (95), Expect = 0.004
 Identities = 43/212 (20%), Positives = 61/212 (28%), Gaps = 15/212 (7%)

Query: 167 AFPPASPPS---NAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASH 223
           AF P +  S   NA        S +A+      +   P P         P +TA + A  
Sbjct: 357 AFAPLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMP 416

Query: 224 PSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTA 283
                  P S       PP       AP  A     T+   A     TA    + P N  
Sbjct: 417 SEGKTAGPVSNQENNDVPPWE----DAPDEAQTAAGTAQTSAKSIQ-TASEAETPPENQV 471

Query: 284 PPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPA----SHPSNTAP 339
               +  ++T  P +  PS     P     N         ++ AP         P N  P
Sbjct: 472 SKNKAADNETDAPLSEVPS---ENPIQATPNDEAVETETFAHEAPAEPFYGYGFPDNDCP 528

Query: 340 PPASHSSKTAPPPASHPSNTALPPASHPSNPA 371
           P             + P++TA   A   +   
Sbjct: 529 PEDGAEIPPPDWEHAAPADTAGGGADEEAEAG 560

Length = 709

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 40.5 bits (95), Expect = 0.004
 Identities = 27/135 (20%), Positives = 44/135 (32%), Gaps = 9/135 (6%)

Query: 240 PPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHP-----SKTA 294
            PP    S       S  Y   P P   P +T   P S P++   PP   P      + A
Sbjct: 55  YPPRETGSGGGVAT-STIYTV-PRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGGFRGA 112

Query: 295 PPPASHPSNTAPPPASHPSNTA-PPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPA 353
             P     +T+P      +      P    ++++   +    ++ PPP+  S K      
Sbjct: 113 SSPRLGADSTSPRFLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPSE-SLKVKNGGK 171

Query: 354 SHPSNTALPPASHPS 368
            +P   +       S
Sbjct: 172 VYPKGFSKHKTHKRS 186

Length = 580

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	955
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	97.66
PTZ00382	96	Variant-specific surface protein (VSP); Provisiona	97.32
PF03302	397	VSP: Giardia variant-specific surface protein; Int	96.23
PF05808	162	Podoplanin: Podoplanin; InterPro: IPR008783 This f	96.07
PF01034	64	Syndecan: Syndecan domain; InterPro: IPR001050 The	95.2
PF05454	290	DAG1: Dystroglycan (Dystrophin-associated glycopro	94.94
PF12877	684	DUF3827: Domain of unknown function (DUF3827); Int	94.81
PF04478	154	Mid2: Mid2 like cell wall stress sensor; InterPro:	93.8
PF01299	306	Lamp: Lysosome-associated membrane glycoprotein (L	91.99
PF07213	79	DAP10: DAP10 membrane protein; InterPro: IPR009861	91.9
PF13908	179	Shisa: Wnt and FGF inhibitory regulator	91.31
PF15102	146	TMEM154: TMEM154 protein family	91.29
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	90.71
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	90.18
PF12768	281	Rax2: Cortical protein marker for cell polarity	90.13
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	89.04
PF04689	69	S1FA: DNA binding protein S1FA; InterPro: IPR00677	88.68
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	88.4
PF10873	155	DUF2668: Protein of unknown function (DUF2668); In	87.3
PF02009	299	Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00	84.47
PF12301	169	CD99L2: CD99 antigen like protein 2; InterPro: IPR	82.89
PF13908	179	Shisa: Wnt and FGF inhibitory regulator	82.8
PF01034	64	Syndecan: Syndecan domain; InterPro: IPR001050 The	82.36
PHA03265	402	envelope glycoprotein D; Provisional	82.18
PF06024	101	DUF912: Nucleopolyhedrovirus protein of unknown fu	81.32
PF14575	75	EphA2_TM: Ephrin type-A receptor 2 transmembrane d	80.53
PF08374	221	Protocadherin: Protocadherin; InterPro: IPR013585	80.41

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=97.66  E-value=3.7e-05  Score=74.21  Aligned_cols=38  Identities=8%  Similarity=0.026  Sum_probs=30.6

Q ss_pred             cCCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhcccc
Q 002185          872 KYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHA  909 (955)
Q Consensus       872 KkgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~  909 (955)
                      .++++.++|+||++|+++++|+++++++||++|+|||.
T Consensus        58 ~h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~   95 (122)
T PF01102_consen   58 VHRFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKS   95 (122)
T ss_dssp             SSSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred             ccCccccceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            56899999999999999999999999888887777664

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PTZ00382 Variant-specific surface protein (VSP); Provisional

Probab=97.32  E-value=7.8e-05  Score=68.97  Aligned_cols=35  Identities=20%  Similarity=0.095  Sum_probs=26.1

Q ss_pred             ccCCCCCcceehhhHHHHHHHHHHHHHHHHHHHhh
Q 002185          871 QKYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKY  905 (955)
Q Consensus       871 kKkgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRR  905 (955)
                      .+++++.|+|+||+||+++++.+|++++++++++|
T Consensus        59 ~~~~ls~gaiagi~vg~~~~v~~lv~~l~w~f~~r   93 (96)
T PTZ00382         59 NRSGLSTGAIAGISVAVVAVVGGLVGFLCWWFVCR   93 (96)
T ss_pred             CCCCcccccEEEEEeehhhHHHHHHHHHhheeEEe
Confidence            35789999999999999888877766654443333

>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein)

Probab=96.23  E-value=0.0022  Score=71.59  Aligned_cols=36  Identities=25%  Similarity=0.126  Sum_probs=28.5

Q ss_pred             ccCCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhc
Q 002185          871 QKYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYK  906 (955)
Q Consensus       871 kKkgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRR  906 (955)
                      .|++||.|+||||+|++||+|..|++++.+|++-|+
T Consensus       360 n~s~LstgaIaGIsvavvvvVgglvGfLcWwf~crg  395 (397)
T PF03302_consen  360 NKSGLSTGAIAGISVAVVVVVGGLVGFLCWWFICRG  395 (397)
T ss_pred             ccccccccceeeeeehhHHHHHHHHHHHhhheeecc
Confidence            467999999999999999888888887655544433

>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes []

Probab=96.07  E-value=0.0016  Score=65.90  Aligned_cols=40  Identities=18%  Similarity=0.227  Sum_probs=0.0

Q ss_pred             ccCCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhccccc
Q 002185          871 QKYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHAC  910 (955)
Q Consensus       871 kKkgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~s  910 (955)
                      +|.||+.+.+|||+||+++++.+|.++++++++|.+.|++
T Consensus       122 ek~GL~T~tLVGIIVGVLlaIG~igGIIivvvRKmSGRys  161 (162)
T PF05808_consen  122 EKDGLSTVTLVGIIVGVLLAIGFIGGIIIVVVRKMSGRYS  161 (162)
T ss_dssp             ----------------------------------------
T ss_pred             ccCCcceeeeeeehhhHHHHHHHHhheeeEEeehhccccC
Confidence            5789999999999999999999999988777666677765

; GO: 0016021 integral to membrane; PDB: 3IET_X.

>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]

Probab=95.20  E-value=0.0053  Score=54.21  Aligned_cols=32  Identities=13%  Similarity=0.326  Sum_probs=0.7

Q ss_pred             ceehhhHHHHHHHHHHHHHHHHHHHhhccccc
Q 002185          879 MIAIVVLSAFVAVVLCSAAAWVLLFKYKSHAC  910 (955)
Q Consensus       879 aIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~s  910 (955)
                      +++|+++|++++++++++++.|+++|.|||.+
T Consensus        10 vlaavIaG~Vvgll~ailLIlf~iyR~rkkdE   41 (64)
T PF01034_consen   10 VLAAVIAGGVVGLLFAILLILFLIYRMRKKDE   41 (64)
T ss_dssp             ---------------------------S----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            34455555555555555555566677666654

Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.

>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5

Probab=94.94  E-value=0.0069  Score=65.92  Aligned_cols=92  Identities=11%  Similarity=0.047  Sum_probs=0.0

Q ss_pred             EEEEEeccccCCc---chHHHHHHHHHhccC-cccccEEEeceecCCCCCcEEEEEEeecCCcccchHHHHHHHHHhccC
Q 002185          735 VGLRLSVALYTFF---PLVSELAGEIAAGVF-MKQSQVRIIGANAAEQPDKTVVLTDLVPLGEKFDNTTAFLTYQRFWHK  810 (955)
Q Consensus       735 V~LRLRSPSFSfF---Py~SELEsELASgL~-L~vSQV~I~Nf~wesgPrkL~VtLdLFPsGdsFNnTEAsrI~srL~nq  810 (955)
                      +.++|+...-+|.   -+...|-+.||..|| -+.++|.|.++.  .|.-.+.|+=+-.+. +.=++.++.++..+|...
T Consensus         3 F~~~l~~d~~~f~~dv~~ki~lVekLA~~~GD~nts~ItV~sIt--~gstiVtwtNnTLp~-~~CP~eeI~~L~~~L~~~   79 (290)
T PF05454_consen    3 FSATLDIDYESFNNDVQRKILLVEKLARLFGDRNTSSITVRSIT--SGSTIVTWTNNTLPT-SPCPKEEIEKLRKRLVDD   79 (290)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEEEcCCHHHhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEEec--CCCEEEEEEcCCCCC-CCCCHHHHHHHHHHHhcC
Confidence            3445554422222   334458888898886 557899999987  221112332222221 223345566666655554


Q ss_pred             eeecC---CCCcC-CeeeeEEeC
Q 002185          811 QVVIK---SSYFG-DYEVLYVRY  829 (955)
Q Consensus       811 tV~i~---PSlFG-PYELL~ftY  829 (955)
                      .-...   -..|| .|.|.++++
T Consensus        80 ~g~~~~~f~~am~pef~V~svsv  102 (290)
T PF05454_consen   80 DGKPSQEFVRAMGPEFKVKSVSV  102 (290)
T ss_dssp             -----------------------
T ss_pred             CCCcCHHHHHHhCCCCceeEEEE
Confidence            32111   12355 466667665

5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.

>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]

Probab=94.81  E-value=0.13  Score=61.23  Aligned_cols=47  Identities=15%  Similarity=0.163  Sum_probs=35.2

Q ss_pred             cEEEeceecCCCCC-cEEEEEEee-cCCcccchHHHHHHHHHhccCeee
Q 002185          767 QVRIIGANAAEQPD-KTVVLTDLV-PLGEKFDNTTAFLTYQRFWHKQVV  813 (955)
Q Consensus       767 QV~I~Nf~wesgPr-kL~VtLdLF-PsGdsFNnTEAsrI~srL~nqtV~  813 (955)
                      -|.+.+.....|.+ -++++-.+- ..|+.+..+++-++...+..|++.
T Consensus       191 tVQmV~~sRl~G~~nP~EL~YyV~~~~G~pl~a~~AA~~Ln~ld~Q~~A  239 (684)
T PF12877_consen  191 TVQMVNMSRLEGPDNPVELTYYVEGQNGKPLPAVTAAKDLNLLDSQRMA  239 (684)
T ss_pred             EEEEEEeeeccCCCCceEEEEEEEcCCCcCCcHHHHHHHHhccCHHHHH
Confidence            34455555555443 477776677 689999999999999999999884

In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.

>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region

Probab=93.80  E-value=0.018  Score=58.03  Aligned_cols=18  Identities=11%  Similarity=0.080  Sum_probs=12.3

Q ss_pred             CCCcceehhhHHHHHHHH
Q 002185          875 LSGGMIAIVVLSAFVAVV  892 (955)
Q Consensus       875 LSkGaIAGIVLGSVVlVV  892 (955)
                      -++.+|||+|||..+.+|
T Consensus        46 knknIVIGvVVGVGg~il   63 (154)
T PF04478_consen   46 KNKNIVIGVVVGVGGPIL   63 (154)
T ss_pred             CCccEEEEEEecccHHHH
Confidence            355789999998544443

The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].

>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear

Probab=91.99  E-value=0.074  Score=57.24  Aligned_cols=32  Identities=16%  Similarity=0.088  Sum_probs=24.0

Q ss_pred             cceehhhHHHHHHHHHHHHHHHHHHHhhcccc
Q 002185          878 GMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHA  909 (955)
Q Consensus       878 GaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~  909 (955)
                      ..||-|+||+++++|+|++++.||+.|||++.
T Consensus       270 ~~~vPIaVG~~La~lvlivLiaYli~Rrr~~~  301 (306)
T PF01299_consen  270 SDLVPIAVGAALAGLVLIVLIAYLIGRRRSRA  301 (306)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhheeEeccccc
Confidence            57888999988877777777777776666654

Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane

>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins

Probab=91.90  E-value=0.11  Score=47.85  Aligned_cols=38  Identities=24%  Similarity=0.309  Sum_probs=29.5

Q ss_pred             CCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhcccccc
Q 002185          873 YGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQ  911 (955)
Q Consensus       873 kgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~sq  911 (955)
                      ..++.|+.+|||+|=+++.+++++++++|. |.|+|.+|
T Consensus        29 ~~ls~g~LaGiV~~D~vlTLLIv~~vy~ca-r~r~r~~~   66 (79)
T PF07213_consen   29 YPLSPGLLAGIVAADAVLTLLIVLVVYYCA-RPRRRPTQ   66 (79)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccCCcc
Confidence            568999999999999999999888876664 44444443

In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].

>PF13908 Shisa: Wnt and FGF inhibitory regulator

Probab=91.31  E-value=0.13  Score=51.41  Aligned_cols=16  Identities=19%  Similarity=0.285  Sum_probs=8.3

Q ss_pred             CCCcceehhhHHHHHH
Q 002185          875 LSGGMIAIVVLSAFVA  890 (955)
Q Consensus       875 LSkGaIAGIVLGSVVl  890 (955)
                      +..++|+||++|+|++
T Consensus        76 ~~~~iivgvi~~Vi~I   91 (179)
T PF13908_consen   76 FITGIIVGVICGVIAI   91 (179)
T ss_pred             ceeeeeeehhhHHHHH
Confidence            3445566655554443

>PF15102 TMEM154: TMEM154 protein family

Probab=91.29  E-value=0.13  Score=51.78  Aligned_cols=37  Identities=11%  Similarity=0.222  Sum_probs=21.8

Q ss_pred             CCCcceehhhHHHHHHHHHHHHHHHHHHHhhcccccc
Q 002185          875 LSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQ  911 (955)
Q Consensus       875 LSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~sq  911 (955)
                      .....|+.|+|..|+++++|+.+++++++.||||.++
T Consensus        53 ~q~efiLmIlIP~VLLvlLLl~vV~lv~~~kRkr~K~   89 (146)
T PF15102_consen   53 SQLEFILMILIPLVLLVLLLLSVVCLVIYYKRKRTKQ   89 (146)
T ss_pred             CCcceEEEEeHHHHHHHHHHHHHHHheeEEeecccCC
Confidence            3445577777777777666666655554444444433

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=90.71  E-value=0.33  Score=39.56  Aligned_cols=29  Identities=14%  Similarity=0.305  Sum_probs=17.5

Q ss_pred             ehhhHHHHHHHHHHHHHHHHHHHhhcccc
Q 002185          881 AIVVLSAFVAVVLCSAAAWVLLFKYKSHA  909 (955)
Q Consensus       881 AGIVLGSVVlVVLLsAaa~LLLLRRRRR~  909 (955)
                      ++|++|.++++++++..+++++.++||.+
T Consensus         6 IaIIv~V~vg~~iiii~~~~YaCcykk~~   34 (38)
T PF02439_consen    6 IAIIVAVVVGMAIIIICMFYYACCYKKHR   34 (38)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            46666777777666666555545555433

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=90.18  E-value=0.37  Score=46.27  Aligned_cols=13  Identities=23%  Similarity=0.074  Sum_probs=6.8

Q ss_pred             CCCCccCccCCCc
Q 002185          916 PQSLQTSHVKPSV  928 (955)
Q Consensus       916 ~~pFaSs~~K~SG  928 (955)
                      .--...|+...++
T Consensus        33 P~~gt~w~~pp~~   45 (130)
T PF12273_consen   33 PIYGTRWMAPPSY   45 (130)
T ss_pred             CcCCceecCCCCC
Confidence            3345666664444

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=90.13  E-value=0.31  Score=52.97  Aligned_cols=31  Identities=19%  Similarity=0.295  Sum_probs=22.2

Q ss_pred             cCCCCCcceehhhHHHHHHHHHHHHHHHHHH
Q 002185          872 KYGLSGGMIAIVVLSAFVAVVLCSAAAWVLL  902 (955)
Q Consensus       872 KkgLSkGaIAGIVLGSVVlVVLLsAaa~LLL  902 (955)
                      ++++++|.+|+|.+++.+++++|++++.+++
T Consensus       221 ~~~l~~G~VVlIslAiALG~v~ll~l~Gii~  251 (281)
T PF12768_consen  221 GKKLSRGFVVLISLAIALGTVFLLVLIGIIL  251 (281)
T ss_pred             cccccceEEEEEehHHHHHHHHHHHHHHHHH
Confidence            5899999999998887666655555544443

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=89.04  E-value=0.14  Score=41.93  Aligned_cols=8  Identities=0%  Similarity=0.347  Sum_probs=3.2

Q ss_pred             HHHHhhcc
Q 002185          900 VLLFKYKS  907 (955)
Q Consensus       900 LLLLRRRR  907 (955)
                      |+++|||+
T Consensus        32 l~~~~rR~   39 (40)
T PF08693_consen   32 LFFWYRRK   39 (40)
T ss_pred             hheEEecc
Confidence            34334443

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix

Probab=88.68  E-value=0.77  Score=41.30  Aligned_cols=35  Identities=23%  Similarity=0.495  Sum_probs=25.1

Q ss_pred             ccCCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhc
Q 002185          871 QKYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYK  906 (955)
Q Consensus       871 kKkgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRR  906 (955)
                      +.+|+|-|+|+-|+||+++++.++--.+ ++++.||
T Consensus         6 ~~KGlnPGlIVLlvV~g~ll~flvGnyv-lY~Yaqk   40 (69)
T PF04689_consen    6 EAKGLNPGLIVLLVVAGLLLVFLVGNYV-LYVYAQK   40 (69)
T ss_pred             cccCCCCCeEEeehHHHHHHHHHHHHHH-HHHHHhh
Confidence            4689999999999999877766554444 4444443

S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=88.40  E-value=0.14  Score=58.60  Aligned_cols=38  Identities=24%  Similarity=0.301  Sum_probs=0.0

Q ss_pred             CCCcceehhhHHHHHHHHHHHHHHHHHHHhhccccccc
Q 002185          875 LSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQA  912 (955)
Q Consensus       875 LSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~sqa  912 (955)
                      ....+++++++|++++++++++++|+|++|||||+...
T Consensus       349 ~~~~~~l~vVlgvavlivVv~viv~vc~~~rrrR~~~~  386 (439)
T PF02480_consen  349 SRGAALLGVVLGVAVLIVVVGVIVWVCLRCRRRRRQRD  386 (439)
T ss_dssp             --------------------------------------
T ss_pred             CcccchHHHHHHHHHHHHHHHHHhheeeeehhcccccc
Confidence            34456777777888888888888888876666554433

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known []

Probab=87.30  E-value=0.59  Score=47.44  Aligned_cols=27  Identities=26%  Similarity=0.197  Sum_probs=21.4

Q ss_pred             CCCCCcceehhhHHHHHHHHHHHHHHH
Q 002185          873 YGLSGGMIAIVVLSAFVAVVLCSAAAW  899 (955)
Q Consensus       873 kgLSkGaIAGIVLGSVVlVVLLsAaa~  899 (955)
                      ..+++.+|+|||.|.|+++.++.++++
T Consensus        56 ~~lsgtAIaGIVfgiVfimgvva~i~i   82 (155)
T PF10873_consen   56 DVLSGTAIAGIVFGIVFIMGVVAGIAI   82 (155)
T ss_pred             cccccceeeeeehhhHHHHHHHHHHHH
Confidence            457899999999999888877766643

>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world

Probab=84.47  E-value=0.71  Score=50.93  Aligned_cols=23  Identities=9%  Similarity=0.280  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHhhccccc
Q 002185          888 FVAVVLCSAAAWVLLFKYKSHAC  910 (955)
Q Consensus       888 VVlVVLLsAaa~LLLLRRRRR~s  910 (955)
                      ++++++|+.+++||+||+||+++
T Consensus       264 aIliIVLIMvIIYLILRYRRKKK  286 (299)
T PF02009_consen  264 AILIIVLIMVIIYLILRYRRKKK  286 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Confidence            34445556666788888777544

Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].

>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes

Probab=82.89  E-value=1.3  Score=45.48  Aligned_cols=35  Identities=29%  Similarity=0.281  Sum_probs=19.9

Q ss_pred             ccCCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhcc
Q 002185          871 QKYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKS  907 (955)
Q Consensus       871 kKkgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRR  907 (955)
                      .......|+|+|||- +|+++ |+-++.-|+.++|||
T Consensus       108 ~~~~~~~g~IaGIvs-av~va-lvGAvsSyiaYqkKK  142 (169)
T PF12301_consen  108 QDGEAEAGTIAGIVS-AVVVA-LVGAVSSYIAYQKKK  142 (169)
T ss_pred             cccCcccchhhhHHH-HHHHH-HHHHHHHHHHHHhhc
Confidence            356678899999883 33322 333333455555554

Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.

>PF13908 Shisa: Wnt and FGF inhibitory regulator

Probab=82.80  E-value=0.97  Score=45.26  Aligned_cols=26  Identities=8%  Similarity=0.004  Sum_probs=19.9

Q ss_pred             CCCCcceehhhHHHHHHHHHHHHHHH
Q 002185          874 GLSGGMIAIVVLSAFVAVVLCSAAAW  899 (955)
Q Consensus       874 gLSkGaIAGIVLGSVVlVVLLsAaa~  899 (955)
                      ...++++++|++|+|+++|+++++++
T Consensus        71 ~p~~~~~~~iivgvi~~Vi~Iv~~Iv   96 (179)
T PF13908_consen   71 DPPIYFITGIIVGVICGVIAIVVLIV   96 (179)
T ss_pred             CccccceeeeeeehhhHHHHHHHhHh
Confidence            34578899999999998877765544

>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]

Probab=82.36  E-value=0.41  Score=42.71  Aligned_cols=43  Identities=16%  Similarity=0.093  Sum_probs=2.3

Q ss_pred             cCCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhcccccccccC
Q 002185          872 KYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQAEEV  915 (955)
Q Consensus       872 KkgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~sqa~e~  915 (955)
                      +...-.++|+|+|+|.++++++++.+ ++.+.||.+....-.|.
T Consensus         7 ~~~vlaavIaG~Vvgll~ailLIlf~-iyR~rkkdEGSY~l~e~   49 (64)
T PF01034_consen    7 RSEVLAAVIAGGVVGLLFAILLILFL-IYRMRKKDEGSYDLDEP   49 (64)
T ss_dssp             -------------------------------S------SS--S-
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCccCCCC
Confidence            44556999999999887777766555 57778888765544443

Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.

>PHA03265 envelope glycoprotein D; Provisional

Probab=82.18  E-value=0.78  Score=51.91  Aligned_cols=32  Identities=9%  Similarity=0.051  Sum_probs=17.3

Q ss_pred             CCcceehhhHHHHHHHHHHHHHHHHHHHhhcc
Q 002185          876 SGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKS  907 (955)
Q Consensus       876 SkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRR  907 (955)
                      +-+..+||+||..++-++++++++|++|||||
T Consensus       345 ~~~~~~g~~ig~~i~glv~vg~il~~~~rr~k  376 (402)
T PHA03265        345 SNSTFVGISVGLGIAGLVLVGVILYVCLRRKK  376 (402)
T ss_pred             CCCcccceEEccchhhhhhhhHHHHHHhhhhh
Confidence            34445566655544444455555555566655

>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins

Probab=81.32  E-value=0.48  Score=44.44  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=17.9

Q ss_pred             CCcceehhhHHHHHHHHHHHHHHHHHHHhhccccc
Q 002185          876 SGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHAC  910 (955)
Q Consensus       876 SkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~s  910 (955)
                      ...+|++++|+.++++|+|.++.+|.++|.|++..
T Consensus        60 ~~~iili~lls~v~IlVily~IyYFVILRer~~~~   94 (101)
T PF06024_consen   60 NGNIILISLLSFVCILVILYAIYYFVILRERQKSI   94 (101)
T ss_pred             cccchHHHHHHHHHHHHHHhhheEEEEEecccccc
Confidence            33444444555555555555555555556555443

>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A

Probab=80.53  E-value=0.64  Score=41.81  Aligned_cols=18  Identities=6%  Similarity=0.165  Sum_probs=7.9

Q ss_pred             eehhhHHHHHHHHHHHHH
Q 002185          880 IAIVVLSAFVAVVLCSAA  897 (955)
Q Consensus       880 IAGIVLGSVVlVVLLsAa  897 (955)
                      |+++++++++++++++++
T Consensus         2 ii~~~~~g~~~ll~~v~~   19 (75)
T PF14575_consen    2 IIASIIVGVLLLLVLVII   19 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             EEehHHHHHHHHHHhhee
Confidence            344444444444444443

...

>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains

Probab=80.41  E-value=1.8  Score=46.28  Aligned_cols=19  Identities=5%  Similarity=0.193  Sum_probs=9.3

Q ss_pred             cceehhhHHHHHHHHHHHH
Q 002185          878 GMIAIVVLSAFVAVVLCSA  896 (955)
Q Consensus       878 GaIAGIVLGSVVlVVLLsA  896 (955)
                      .+++|||.|+++++|+|++
T Consensus        38 ~I~iaiVAG~~tVILVI~i   56 (221)
T PF08374_consen   38 KIMIAIVAGIMTVILVIFI   56 (221)
T ss_pred             eeeeeeecchhhhHHHHHH
Confidence            3455555555444444433

They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	955
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	3e-15
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	4e-15
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	4e-15
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-14
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-14
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-14
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	3e-13
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	8e-13
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	3e-12
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	5e-10
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-05
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	5e-14
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-13
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-11
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-11
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	3e-11
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	3e-11
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	4e-11
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-10
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	8e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	1e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	1e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	5e-04
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	1e-05
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	6e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	4e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	4e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-04
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	4e-04
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	5e-04
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	5e-04
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	8e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	6e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	5e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	6e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	6e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	9e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	7e-05
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	9e-05
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	5e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	5e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-04
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-04
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	8e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	5e-04

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 79.8 bits (196), Expect = 3e-15
 Identities = 56/296 (18%), Positives = 98/296 (33%), Gaps = 21/296 (7%)

Query: 117  PPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSN 176
              +           TP ++   +    L         +  +PL    S+ A         
Sbjct: 1457 QKITEIEDGQDGGVTPYSNESGLVNADL----DVKDELMFSPLVDSGSNDAMAGGFTAYG 1512

Query: 177  AARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPS 236
             A               S        P S     + P  +  SP   P+    P  S  S
Sbjct: 1513 GADYG---------EATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPT---SPAYSPTS 1560

Query: 237  KTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPP 296
             +  P +   S T+P  +      SP   + PS +   P+  P++ +  P S PS +   
Sbjct: 1561 PSYSPTSPSYSPTSPSYSPTSPSYSP---TSPSYSPTSPSYSPTSPSYSPTS-PSYSPTS 1616

Query: 297  PASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPP-PASH 355
            P+  P++ +  P S   +   P  S  S +  P +   S T+P  +  S   +P  P+  
Sbjct: 1617 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYS 1676

Query: 356  PSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHP 411
            P++ +  P S   +P  P  S  S +  P +   S  +P ++            + 
Sbjct: 1677 PTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENS 1732

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 79.4 bits (195), Expect = 4e-15
 Identities = 59/264 (22%), Positives = 95/264 (35%), Gaps = 13/264 (4%)

Query: 81   SFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPIT 140
             +S  +  V+A  D+       P     S  ++                +   A     T
Sbjct: 1472 PYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPT 1531

Query: 141  APPLVNVLPAPSLIPTTPLASPLS------SKAFPPASPPSNAARPPASHPSNTARPPAS 194
            +P      P  S  PT+P  SP S      S ++ P SP  +   P  S  S +  P + 
Sbjct: 1532 SPGFGVSSPGFS--PTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1589

Query: 195  HPSRTAPP--PASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPP 252
              S T+P   P S   +   PS +  SP+  P++ +  P S       P  S  S +  P
Sbjct: 1590 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1649

Query: 253  PASHPYKTSP-LPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASH 311
             +     TSP    + PS +   P+  P++ +  P S  S +   P   P++ +  P S 
Sbjct: 1650 TSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPNYSPTSPSYSPTS- 1707

Query: 312  PSNTAPPPASHPSNTAPPPASHPS 335
            P  +   PA  P         + +
Sbjct: 1708 PGYSPGSPAYSPKQDEQKHNENEN 1731

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 79.4 bits (195), Expect = 4e-15
 Identities = 58/309 (18%), Positives = 101/309 (32%), Gaps = 18/309 (5%)

Query: 93   FDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPS 152
            FD+      +         +           P S       A            ++ + S
Sbjct: 1441 FDVMIDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGS 1500

Query: 153  LIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTAL 212
                    +      +  A+ P  A     + P      P   P+     P S       
Sbjct: 1501 NDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTS------- 1553

Query: 213  PSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTA 272
            P+ +  SP+  P++ +  P S       P  S  S +  P +     TS  P+  P+  +
Sbjct: 1554 PAYSPTSPSYSPTSPSYSPTS-------PSYSPTSPSYSPTSPSYSPTS--PSYSPTSPS 1604

Query: 273  PPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPAS 332
              P S PS +   P+  P+  +  P S   +   P  S  S +  P +   S T+P  + 
Sbjct: 1605 YSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1663

Query: 333  HPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNT 392
               + +P   S+S  +     + PS +   P   P++P+  P S P  +   PA  P   
Sbjct: 1664 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTS-PGYSPGSPAYSPKQD 1722

Query: 393  APPHASHPS 401
               H  + +
Sbjct: 1723 EQKHNENEN 1731

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 77.8 bits (191), Expect = 1e-14
 Identities = 53/299 (17%), Positives = 89/299 (29%), Gaps = 21/299 (7%)

Query: 78   NIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPP 137
            ++  + P               +            +     +  +P         +A   
Sbjct: 1449 SLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGG- 1507

Query: 138  PITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPS 197
                        A          SP  +    P SP    + P  S P++    P S   
Sbjct: 1508 ----------FTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFS-PTSPTYSPTSPAY 1556

Query: 198  RTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHP 257
                P  S  S +  P+  + SP S   +   P  S  S +  P +   S T+P  +   
Sbjct: 1557 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1616

Query: 258  YKTSPL-----PASHPSKTAPPPASHPSNTAPPPASHPSKTAPP-PASHPSNTAPPPASH 311
               SP      P S       P  S  S +  P +   S T+P    + PS +   P+  
Sbjct: 1617 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYS 1676

Query: 312  PSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNP 370
            P+    P  S  S +  P + + S T+P  +  S   +P   ++         +   N 
Sbjct: 1677 PT---SPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENS 1732

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 77.4 bits (190), Expect = 2e-14
 Identities = 61/288 (21%), Positives = 105/288 (36%), Gaps = 17/288 (5%)

Query: 133  VASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPP 192
            +            +    P    +  + + L  K     SP  ++    A     TA   
Sbjct: 1454 MPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGG 1513

Query: 193  ASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPP 252
            A +   T+P  A   + T+ P     SP   P++    P S       P  S  S +  P
Sbjct: 1514 ADYGEATSPFGAYGEAPTS-PGFGVSSPGFSPTSPTYSPTS-------PAYSPTSPSYSP 1565

Query: 253  PASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHP 312
             +     TSP  +      +P   + PS +   P+  P+  +  P S PS +   P+  P
Sbjct: 1566 TSPSYSPTSPSYSPTSPSYSP---TSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSP 1621

Query: 313  SNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPP-PASHPSNTALPPASHPSNPA 371
            ++ +  P S   +   P  S  S +  P +   S T+P    + PS +   P+  P++P+
Sbjct: 1622 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1681

Query: 372  IPPASHPSNTAIPPASHPSNTAP-PHASHPSNTALTPASHPSNIAPPP 418
              P S    +  P + + S T+P    + P  +  +PA  P       
Sbjct: 1682 YSPTSP---SYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKH 1726

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 77.1 bits (189), Expect = 2e-14
 Identities = 72/313 (23%), Positives = 97/313 (30%), Gaps = 33/313 (10%)

Query: 391  NTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAATPR 450
               P                P +     +   +        +P+  S  +   A   T  
Sbjct: 1452 KYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAY 1511

Query: 451  GNFHRHSPAIHPSMPGPLPPVAQKRNASNREAPIAEPIAPGPFPPGNSRQKSPVARPIIP 510
            G              G  P            +P     +PG  P       SP   P  P
Sbjct: 1512 GGADYGEATSPFGAYGEAPT-----------SPGFGVSSPGFSP------TSPTYSPTSP 1554

Query: 511  GGTPTASPDPDVPPSTPPLSVDGKRVGKPVAEPSYDIPMPPPVNHSPSKAPSTHKYMRHS 570
              +PT+       PS  P S            PSY    P     SPS +P++  Y   S
Sbjct: 1555 AYSPTSPSYSPTSPSYSPTSPSYSPTS-----PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1609

Query: 571  -NHSPLPPFSSPKPPQNNGNDTPVSSPLASFPKHRDVRNKIASSPAPSYFISPTTSIHQG 629
             ++SP  P  SP  P  +   +P  SP +            + SP  S   SPT+  +  
Sbjct: 1610 PSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTS----PSYSPT-SPSYSPTSPAYSP 1663

Query: 630  PVVPPSFIPTSRKRHYGPPPLNSVSPSHSPLPTPVSRVPTSPSPSPTSASGQTELPLLPP 689
                PS+ PTS       P  +  SPS+SP     S  PTSPS SPTS       P   P
Sbjct: 1664 --TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYS--PTSPSYSPTSPGYSPGSPAYSP 1719

Query: 690  KSSPSEPIRAFPP 702
            K    +       
Sbjct: 1720 KQDEQKHNENENS 1732

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 73.2 bits (179), Expect = 3e-13
 Identities = 59/316 (18%), Positives = 94/316 (29%), Gaps = 34/316 (10%)

Query: 270  KTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPP 329
            K  P                P        +   +        P   +    +        
Sbjct: 1452 KYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAY 1511

Query: 330  PASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHP 389
              +     A  P     +    P    S+    P S   +P  P  S  S +  P +   
Sbjct: 1512 GGADYGE-ATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSY 1570

Query: 390  SNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAATP 449
            S T+P ++  P++ + +P S PS     P + P  PS  P       SP   P +P+ +P
Sbjct: 1571 SPTSPSYS--PTSPSYSPTS-PSYSPTSPSYSPTSPSYSP------TSPSYSPTSPSYSP 1621

Query: 450  RGNFHRHSPAIHPSMPGPLPPVAQKRNASNREAPIAEPIAPGPFPPGNSRQKSPVARPII 509
                   SP+  P+ P   P        S   +P +   +P           SP   P  
Sbjct: 1622 ------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT----------SPAYSPTS 1665

Query: 510  PGGTPTASPDPDVPPSTPPLSVDGKRVGKPVAEPSYDIPMPPPVNHSPSKAPSTHKYMRH 569
            P  +PT    P   P++P  S            P+Y    P     SP  +P +  Y   
Sbjct: 1666 PSYSPT---SPSYSPTSPSYSPTSPSYSPT--SPNYSPTSPSYSPTSPGYSPGSPAY--- 1717

Query: 570  SNHSPLPPFSSPKPPQ 585
            S        +  +  +
Sbjct: 1718 SPKQDEQKHNENENSR 1733

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 72.0 bits (176), Expect = 8e-13
 Identities = 60/233 (25%), Positives = 87/233 (37%), Gaps = 12/233 (5%)

Query: 69   PTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASP--PSITAPPPVNMAPPPS 126
                A        F     A ++P      P   PT+P  SP  P+ +   P      PS
Sbjct: 1510 AYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPS 1569

Query: 127  LIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPS 186
              PT+P  SP   +  P      +PS  PT+P  SP +S ++ P SP  +   P  S P+
Sbjct: 1570 YSPTSPSYSPTSPSYSP-----TSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYS-PT 1622

Query: 187  NTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHL 246
            + +  P S       P  S  S +  P+  + SP S   +   P  S  S +  P +   
Sbjct: 1623 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1682

Query: 247  SNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPAS 299
            S T+P  +      SP   + PS +   P   P + A  P     K      S
Sbjct: 1683 SPTSPSYSPTSPNYSP---TSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENS 1732

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 70.1 bits (171), Expect = 3e-12
 Identities = 70/262 (26%), Positives = 101/262 (38%), Gaps = 30/262 (11%)

Query: 26   SAGYGIPPSPAIIGGHFLLPRLPVTFTLKPHLLGGHAP-SPIELPTHSAPPPVNIPSFSP 84
            S       + A+ GG              P    G AP SP    +     P   P++SP
Sbjct: 1493 SPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSP-TSPTYSP 1551

Query: 85   STPAVSA--PFDMAPPPSLIPTNPVASPPSITAPP--PVNMAPPPSLIPTTPVASPPPIT 140
            ++PA S   P      PS  PT+P  SP S +  P  P      PS  PT+P  SP    
Sbjct: 1552 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP---- 1607

Query: 141  APPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTA 200
                     +PS  PT+P  SP +S ++ P SP  +   P  S  S     P+  P+  +
Sbjct: 1608 --------TSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTS-----PSYSPTSPS 1653

Query: 201  PPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPP--PASHPY 258
              P S   +   PS +  SP+  P++   P  S  S +  P + + S T+P   P S  Y
Sbjct: 1654 YSPTSPAYSPTSPSYSPTSPSYSPTS---PSYSPTSPSYSPTSPNYSPTSPSYSPTSPGY 1710

Query: 259  K-TSPLPASHPSKTAPPPASHP 279
               SP  +    +       + 
Sbjct: 1711 SPGSPAYSPKQDEQKHNENENS 1732

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 62.8 bits (152), Expect = 5e-10
 Identities = 57/245 (23%), Positives = 82/245 (33%), Gaps = 27/245 (11%)

Query: 487  PIAPGPFPPGNSRQKSPVARPIIPGGTPTASPDPDVPPSTPPLSVDGKRVGKPVAEPSYD 546
             +        +    SP+                         S      G+    P + 
Sbjct: 1478 GLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATS-PFGAYGEAPTSPGFG 1536

Query: 547  IPMPPPVNHSPSKAPSTHKYMRHSNHSPLPPFSSPKPPQNNGNDTPVSSPLASFPKHRDV 606
            +  P     SP+ +P++  Y      SP  P  SP  P  +    P  SP +        
Sbjct: 1537 VSSPGFSPTSPTYSPTSPAY------SPTSPSYSPTSPSYSPTS-PSYSPTSPS------ 1583

Query: 607  RNKIASSPAPSYFISPTTSIHQGPVVP------PSFIPTSRKRHYGPPPLNSVSPSHSPL 660
             +  + S +P+      TS    P  P      PS+ PTS       P  +  SPS+SP 
Sbjct: 1584 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP- 1642

Query: 661  PTPVSRVPTSPSPSPTSASGQTELPLLPPKSSPSEPIRAFPPPPPNADCSTTICTEP-YT 719
             T  S  PTSPS SPTS +         P  SP+ P  +   P  +    +   T P Y+
Sbjct: 1643 -TSPSYSPTSPSYSPTSPAYSPT----SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYS 1697

Query: 720  NTPPG 724
             T P 
Sbjct: 1698 PTSPS 1702

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 48.6 bits (115), Expect = 1e-05
 Identities = 46/197 (23%), Positives = 56/197 (28%), Gaps = 31/197 (15%)

Query: 539  PVAEPSYDIPMPPPVNHSPSKAPSTHKYMRHSNHSPLPPFSSPKPPQNNGNDTPVSSPLA 598
               E   D  + P  N S                SPL    S       G  T       
Sbjct: 1460 TEIEDGQDGGVTPYSNESGLVNADLDVKD-ELMFSPL--VDSGSNDAMAGGFTAYGGADY 1516

Query: 599  SFPKHRDVRNKIASSPAPSYFISPTTSIHQGPVVPPSFIPTSRKRHYGPPPLNSVSPSHS 658
                          + +P        +     V  P F PTS       P  +  SP++S
Sbjct: 1517 G------------EATSPFGAYGEAPTSPGFGVSSPGFSPTS-------PTYSPTSPAYS 1557

Query: 659  P-----LPTPVSRVPTSPSPSPTSASGQTELPLLPPKSSPSEPIRAFPPPPPNADCSTTI 713
            P      PT  S  PTSPS SPTS S     P   P S    P      P   +   T+ 
Sbjct: 1558 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1617

Query: 714  CTEP----YTNTPPGSP 726
               P    Y+ T P   
Sbjct: 1618 SYSPTSPSYSPTSPSYS 1634

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 75.9 bits (186), Expect = 5e-14
 Identities = 70/326 (21%), Positives = 113/326 (34%), Gaps = 54/326 (16%)

Query: 55   PHLLGGHAPSPIELPTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPS----LIPTNPVASP 110
               L   A +P E         V  P  +  +P V    +          L   +P    
Sbjct: 1475 TSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGV 1534

Query: 111  PSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPP 170
             S     P + A  P    T+P  SP             +P+ +P++P  SP S    P 
Sbjct: 1535 QSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYST------SPAYMPSSPSYSPTS----PS 1584

Query: 171  ASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALP 230
             SP S +  P +   S T+  P+   +  +  P S   +   PS +  SP+  P++ +  
Sbjct: 1585 YSPTSPSYSPTSPSYSPTS--PSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1642

Query: 231  PASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHP 290
            P S       P  S  S                P+  P+  +  P S   +   P  S P
Sbjct: 1643 PTS-------PSYSPTS----------------PSYSPTSPSYSPTSPSYSPTSPSYS-P 1678

Query: 291  SKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAP 350
            +  +  P S   +   P  S  S +  P +   S T+  P+  P++ +  P S       
Sbjct: 1679 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTS------- 1729

Query: 351  PPASHPSNTALPPASHPSNPAIPPAS 376
                 PS +   P+  P++P+  P S
Sbjct: 1730 -----PSYSPTSPSYSPTSPSYSPTS 1750

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 74.3 bits (182), Expect = 2e-13
 Identities = 61/304 (20%), Positives = 109/304 (35%), Gaps = 20/304 (6%)

Query: 94   DMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSL 153
            D     +      V +                +    +P+     + +P      P    
Sbjct: 1452 DQDMLMNYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQG 1511

Query: 154  IPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALP 213
                             ASP      P  + P ++A  P    +  +  P+S P  +  P
Sbjct: 1512 GSEGREGFGDYG-LLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSS-PGYSTSP 1569

Query: 214  SKTAPSPASHPSNTALPPAS-LPSKTAPPPASHLSNTAPPPASHPYKTSPL-PASHPSKT 271
            +    SP+  P++ +  P S   S T+P      S T+P  ++     SP  P+  P+  
Sbjct: 1570 AYMPSSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSATSPSYSPTSPSYSPT-- 1623

Query: 272  APPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPP-----PASHPSNT 326
               P+  P++ +  P S       P  S  S +  P +   S T+P      P+  P++ 
Sbjct: 1624 --SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1681

Query: 327  APPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPA 386
            +  P S   +   P  S +S +  P +   S T+  P+  P++P+  P S PS +   P+
Sbjct: 1682 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTS-PSYSPTSPS 1738

Query: 387  SHPS 390
              P+
Sbjct: 1739 YSPT 1742

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 67.8 bits (165), Expect = 2e-11
 Identities = 67/329 (20%), Positives = 114/329 (34%), Gaps = 44/329 (13%)

Query: 202  PPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTS 261
               +   +    S+      +    + +  +           S L               
Sbjct: 1464 AVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYG 1523

Query: 262  PLPASHPSKTAP-PPASHPSNTAPPPASHPSKTAPPPASHPSNTAPP--PASHPSNTAPP 318
             L A+ P K    P  + P ++A  P    +  +  P+S   +T+P   P+S   +   P
Sbjct: 1524 LLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSP 1583

Query: 319  PASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHP 378
              S  S +  P +   S T+P  ++ S   +  P S PS +   P+  P++P+  P S  
Sbjct: 1584 SYSPTSPSYSPTSPSYSPTSPSYSATS--PSYSPTS-PSYSPTSPSYSPTSPSYSPTSPS 1640

Query: 379  SNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQSP 438
             +   P  S  S +  P +   S T+  P+  P++ +  P                  SP
Sbjct: 1641 YSPTSPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSP-----------------TSP 1681

Query: 439  ISLPDAPAATPRGNFHRHSPAIHPSMPGPLPPVAQKRNASNREAPIAEPIAPGPFPPGNS 498
               P +P+ +P       SP+  P+ P   P        S    P   P +P   P    
Sbjct: 1682 SYSPTSPSYSPT------SPSYSPTSPSYSPTSPSYSPTS----PSYSPTSPSYSP---- 1727

Query: 499  RQKSPVARPIIPGGTPTASPDPDVPPSTP 527
               SP   P  P  +PT+   P   P++P
Sbjct: 1728 --TSPSYSPTSPSYSPTS---PSYSPTSP 1751

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 67.4 bits (164), Expect = 2e-11
 Identities = 83/311 (26%), Positives = 114/311 (36%), Gaps = 38/311 (12%)

Query: 404  ALTPASHPSNIAPPPLFVPVLPSALPG-KAPVSQSPI---SLPDAPAATPRGNFHRHSPA 459
             +  +  P     P    P++ S   G     + SP+              G     SP 
Sbjct: 1472 GMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPY 1531

Query: 460  IHPSMPGPLPPVAQKRNASNREAPIAEPIAPGPFPPGNSRQKSPVARPIIPGGTPTASPD 519
                 PG   P       S+  +P     +P   P       SP   P  P  +PT+   
Sbjct: 1532 KGVQSPGYTSP------FSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTS--- 1582

Query: 520  PDVPPSTPPLSVDGKRVGKPVAEPSYDIPMPPPVNHSPSKAPSTHKYMRHSN-HSPLPPF 578
            P   P++P  S        P + PSY    P     SPS +P++  Y   S  +SP  P 
Sbjct: 1583 PSYSPTSPSYS--------PTS-PSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPS 1633

Query: 579  SSPKPPQNNGNDTPVSSPLASFPKHRDVRNKIASSPAPSYFISPTTSIHQGPVVPPSFIP 638
             SP  P  +    P S   +         +   S  +PSY  SPT+  +      PS+ P
Sbjct: 1634 YSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPSYSPT--SPSYSP 1685

Query: 639  TSRKRHYGPPPLNSVSPSHSPLPTPVSRVPTSPSPSPTSASGQTELPLLPPKS---SPSE 695
            TS       P  +  SPS+SP     S  PTSPS SPTS S     P   P S   SP+ 
Sbjct: 1686 TSPSYSPTSPSYSPTSPSYSPTSPSYS--PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1743

Query: 696  PIRAFPPPPPN 706
            P  ++ P  P+
Sbjct: 1744 P--SYSPTSPS 1752

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 67.0 bits (163), Expect = 3e-11
 Identities = 83/351 (23%), Positives = 124/351 (35%), Gaps = 65/351 (18%)

Query: 236  SKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAP 295
            +      +   ++  P  A  PY+ SP+  S    +    A  P                
Sbjct: 1464 AVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEG-----REG 1518

Query: 296  PPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASH 355
                     A P     S    P  + P ++A  P    +    P  S SS   P  ++ 
Sbjct: 1519 FGDYGLLGAASPYKGVQS----PGYTSPFSSAMSPGYGLT---SPSYSPSS---PGYSTS 1568

Query: 356  PSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAP-PHASHPSNTALTPASHPSNI 414
            P+     P+  P++P+  P S PS +  P +   S T+P   A+ PS +  +P+  P+  
Sbjct: 1569 PAYMPSSPSYSPTSPSYSPTS-PSYS--PTSPSYSPTSPSYSATSPSYSPTSPSYSPT-- 1623

Query: 415  APPPLFVPVLPSALPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSMPGPLPPVAQK 474
               P + P  PS  P       SP   P +P+ +P       SP+  P+ P   P     
Sbjct: 1624 --SPSYSPTSPSYSP------TSPSYSPTSPSYSPT------SPSYSPTSPSYSPT---- 1665

Query: 475  RNASNREAPIAEPIAPGPFPPGNSRQKSPVARPIIPGGTPTASPDPDVPPSTPPLSVDGK 534
                   +P   P +P   P       SP   P  P  +PT+       PS  P S    
Sbjct: 1666 -------SPSYSPTSPSYSPT------SPSYSPTSPSYSPTSPSYSPTSPSYSPTS---- 1708

Query: 535  RVGKPVAEPSYDIPMPPPVNHSPSKAPSTHKYMRHS-NHSPLPPFSSPKPP 584
                    PSY    P     SPS +P++  Y   S ++SP  P  SP  P
Sbjct: 1709 --------PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1751

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 66.6 bits (162), Expect = 3e-11
 Identities = 64/248 (25%), Positives = 93/248 (37%), Gaps = 14/248 (5%)

Query: 34   SPAIIGGHFLLPRLPVTFTLKPHLLGGHAPSPIELPTHSAPPPVNIPSFSPSTPAVSAPF 93
            SP + GG            L          SP      S+         SPS    S  +
Sbjct: 1506 SPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGY 1565

Query: 94   DMAPPPSLIPTNPVASP--PSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAP 151
              +P     P++P  SP  PS +   P      PS  PT+P  S    +  P      +P
Sbjct: 1566 STSPAYM--PSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPT-----SP 1618

Query: 152  SLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTA 211
            S  PT+P  SP +S ++ P SP  +   P  S P++ +  P S       P  S  S + 
Sbjct: 1619 SYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSY 1676

Query: 212  LPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAP--PPASHPYKTSPLPASHPS 269
             P+  + SP S   +   P  S  S +  P +   S T+P   P S  Y  +  P+  P+
Sbjct: 1677 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPT 1735

Query: 270  KTAPPPAS 277
              +  P S
Sbjct: 1736 SPSYSPTS 1743

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 66.6 bits (162), Expect = 4e-11
 Identities = 60/300 (20%), Positives = 105/300 (35%), Gaps = 16/300 (5%)

Query: 170  PASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTAL 229
                 + +    +  P     P    P   +    S  +    P     S          
Sbjct: 1464 AVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYG 1523

Query: 230  PPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPP--PA 287
               +           + S  +   +  P      P+  PS      +     ++P   P 
Sbjct: 1524 LLGAASPYKGVQSPGYTSPFSSAMS--PGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPT 1581

Query: 288  SHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSK 347
            S PS +   P+  P++ +  P S   +   P  S  S +  P +   S T+P  +  S  
Sbjct: 1582 S-PSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1640

Query: 348  TAP-PPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALT 406
             +P  P+  P++ +  P S   +P  P  S  S +  P +   S T+P  +  P++ + +
Sbjct: 1641 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYS 1698

Query: 407  PASHPSNIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAATPRG-NFHRHSPAIHPSMP 465
            P S PS     P + P  PS  P       SP   P +P+ +P   ++   SP+  P+ P
Sbjct: 1699 PTS-PSYSPTSPSYSPTSPSYSP------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1751

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 57.4 bits (138), Expect = 2e-08
 Identities = 48/207 (23%), Positives = 70/207 (33%), Gaps = 28/207 (13%)

Query: 539  PVAEPSYDIPMPPPVNHSP---SKAPSTHKYMRHSNHSPLPPFSSPKPPQNNGNDTPVSS 595
            P+ +  + +  P     SP     +     +  +       P+   + P      +   S
Sbjct: 1490 PMVDSGF-VGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMS 1548

Query: 596  PLASFPKHRDVRNKIASSPAPSY-----FISPT------TSIHQGPVVPPSFIPTSRKRH 644
            P           +    S +P+Y       SPT      TS    P   PS+ PTS    
Sbjct: 1549 PGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPT-SPSYSPTS---- 1603

Query: 645  YGPPPLNSVSPSHSPL-----PTPVSRVPTSPSPSPTSASGQTELPLLPPKSSPSEPIRA 699
               P  ++ SPS+SP      PT  S  PTSPS SPTS S     P   P S    P   
Sbjct: 1604 ---PSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1660

Query: 700  FPPPPPNADCSTTICTEPYTNTPPGSP 726
               P   +   T+    P + +   + 
Sbjct: 1661 SYSPTSPSYSPTSPSYSPTSPSYSPTS 1687

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 62.2 bits (150), Expect = 6e-10
 Identities = 27/170 (15%), Positives = 40/170 (23%), Gaps = 1/170 (0%)

Query: 254 ASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPS 313
           + H  +  P       + A P         P   +    +       P    P       
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 314 NTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHP-SNPAI 372
            T      H        + +  +    P    +    P       T L     P + PA 
Sbjct: 62  LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121

Query: 373 PPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVP 422
              S      + P +            P  T LT    P  I P  + VP
Sbjct: 122 GQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVP 171

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 61.8 bits (149), Expect = 1e-09
 Identities = 31/209 (14%), Positives = 49/209 (23%), Gaps = 3/209 (1%)

Query: 266 SHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPP-PASHPSNTAPPPASHPS 324
           SH  K   P A         P   P++  PP     +  +       P    P       
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 325 NTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIP 384
            T      H        + +       P   P+  A      P     P        A P
Sbjct: 62  LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPN--AYMQPQVPVQMGTPLQQQQQPMAAP 119

Query: 385 PASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQSPISLPDA 444
               PS     +    +                 L +P  P  +P +  +  S +S    
Sbjct: 120 AYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASP 179

Query: 445 PAATPRGNFHRHSPAIHPSMPGPLPPVAQ 473
                  N    + ++      P   V +
Sbjct: 180 DYIRSTLNAVPKNSSLLKKSKLPFGLVIR 208

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 61.4 bits (148), Expect = 1e-09
 Identities = 32/196 (16%), Positives = 53/196 (27%), Gaps = 1/196 (0%)

Query: 167 AFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSN 226
            +P A         P   P+    P     +  +      P   A+PS       + P+ 
Sbjct: 8   VYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT-PAQ 66

Query: 227 TALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPP 286
             L      + T+       +     P ++     P+    P +    P + P+   P  
Sbjct: 67  EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSA 126

Query: 287 ASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSS 346
           A   +                P      T PPP            S  SN +P     + 
Sbjct: 127 AMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTL 186

Query: 347 KTAPPPASHPSNTALP 362
              P  +S    + LP
Sbjct: 187 NAVPKNSSLLKKSKLP 202

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 61.4 bits (148), Expect = 1e-09
 Identities = 38/232 (16%), Positives = 54/232 (23%), Gaps = 12/232 (5%)

Query: 194 SHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPP 253
           SH  +   P A             P+    P + A    S      PP  +      P  
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGA-----VPSM 56

Query: 254 ASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPS 313
               + T      H        + +  +    P   P+  A      P     P      
Sbjct: 57  GQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPN--AYMQPQVPVQMGTPLQQQQQ 114

Query: 314 NTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIP 373
             A P    PS          +   P        T  PP         PP   P    + 
Sbjct: 115 PMAAPAYGQPSAAMGQNMRPMNQLYPIDLL----TELPPPITDLTLPPPPLVIPPERMLV 170

Query: 374 PASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLP 425
           P S  SN +        N  P ++S    + L               +   P
Sbjct: 171 P-SELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPP 221

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 59.5 bits (143), Expect = 5e-09
 Identities = 31/218 (14%), Positives = 46/218 (21%), Gaps = 6/218 (2%)

Query: 222 SHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSN 281
           SH      P A L       P    +   PP        S      P + A P       
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 282 TAPPPASHPSKTAPPPAS------HPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPS 335
             P       +      S      H      P A           +       P A+   
Sbjct: 62  LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121

Query: 336 NTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPP 395
                    + +           T LPP         PP   P    + P+   + +   
Sbjct: 122 GQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDY 181

Query: 396 HASHPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAP 433
             S  +      +    +  P  L +           P
Sbjct: 182 IRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDP 219

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 59.1 bits (142), Expect = 6e-09
 Identities = 33/217 (15%), Positives = 54/217 (24%), Gaps = 1/217 (0%)

Query: 158 PLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTA 217
           P A     +   P   P+    P     +  +      P + A P          P++  
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT-PAQEQ 68

Query: 218 PSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPAS 277
                  + T++    L +     P +++    P     P +    P + P+   P  A 
Sbjct: 69  LHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAM 128

Query: 278 HPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNT 337
             +                P      T PPP            S  SN +P       N 
Sbjct: 129 GQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNA 188

Query: 338 APPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPP 374
            P  +S   K+  P                  P    
Sbjct: 189 VPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNED 225

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 53.7 bits (128), Expect = 3e-07
 Identities = 24/185 (12%), Positives = 43/185 (23%), Gaps = 8/185 (4%)

Query: 299 SHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSN 358
           SH      P A         P   P+   PP     +  +            PP     +
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQ------MGMPPQGAVPS 55

Query: 359 TALPPASHPSNPAIPPASHPSNTAIPPASHPSN--TAPPHASHPSNTALTPASHPSNIAP 416
                   P+   +      + T++      +     P     P               P
Sbjct: 56  MGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQP 115

Query: 417 PPLFVPVLPSALPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSMPGPLPPVAQKRN 476
                   PSA  G+     + +   D     P        P     +P     V  + +
Sbjct: 116 MAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELS 175

Query: 477 ASNRE 481
            ++ +
Sbjct: 176 NASPD 180

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 52.9 bits (126), Expect = 4e-07
 Identities = 30/165 (18%), Positives = 42/165 (25%), Gaps = 2/165 (1%)

Query: 343 SHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSN 402
           SH  K   P A         P   P+    P     +  +      P   A P  S    
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVP--SMGQQ 59

Query: 403 TALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIHP 462
             LTPA    +         +    L     V  +    P  P         +  P   P
Sbjct: 60  QFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAP 119

Query: 463 SMPGPLPPVAQKRNASNREAPIAEPIAPGPFPPGNSRQKSPVARP 507
           +   P   + Q     N+  PI       P     +    P+  P
Sbjct: 120 AYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIP 164

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 50.6 bits (120), Expect = 2e-06
 Identities = 27/206 (13%), Positives = 40/206 (19%), Gaps = 2/206 (0%)

Query: 114 TAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASP 173
            A         P   P   +    P  A      +  P       +              
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 174 PSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPAS 233
                   + +  +    P   P+    P       T L  +  P  A      +     
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130

Query: 234 LPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKT 293
                       L    PPP +    T P P            S  SN +P         
Sbjct: 131 NMRPMNQLYPIDLLTELPPPITDL--TLPPPPLVIPPERMLVPSELSNASPDYIRSTLNA 188

Query: 294 APPPASHPSNTAPPPASHPSNTAPPP 319
            P  +S    +  P            
Sbjct: 189 VPKNSSLLKKSKLPFGLVIRPYQHLY 214

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 49.8 bits (118), Expect = 4e-06
 Identities = 33/206 (16%), Positives = 46/206 (22%), Gaps = 2/206 (0%)

Query: 103 PTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASP 162
                    +     P    PP    P     S   +  PP   V         TP    
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQD--PAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQ 68

Query: 163 LSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPAS 222
           L  +     +  ++            A      P +   P        A P+   PS A 
Sbjct: 69  LHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAM 128

Query: 223 HPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNT 282
             +   +            P      T PPP         L  S  S  +P       N 
Sbjct: 129 GQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNA 188

Query: 283 APPPASHPSKTAPPPASHPSNTAPPP 308
            P  +S   K+  P            
Sbjct: 189 VPKNSSLLKKSKLPFGLVIRPYQHLY 214

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.5 bits (112), Expect = 2e-05
 Identities = 30/193 (15%), Positives = 45/193 (23%), Gaps = 7/193 (3%)

Query: 60  GHAPSPIELPTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPV 119
           G   +P++ P    PP     +          P    P          A           
Sbjct: 17  GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQA 76

Query: 120 NMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAAR 179
             +     +   P+  P     P +   +  P      P+A+P   +             
Sbjct: 77  TTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMN 136

Query: 180 PPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTA 239
                   T  PP        PPP   P    L         S  SN +           
Sbjct: 137 QLYPIDLLTELPPPITDLTLPPPPLVIPPERML-------VPSELSNASPDYIRSTLNAV 189

Query: 240 PPPASHLSNTAPP 252
           P  +S L  +  P
Sbjct: 190 PKNSSLLKKSKLP 202

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.1 bits (111), Expect = 3e-05
 Identities = 29/204 (14%), Positives = 45/204 (22%), Gaps = 1/204 (0%)

Query: 83  SPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAP 142
           +      +A     P   + P +P A+  S            PS+       +P      
Sbjct: 12  AQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSM-GQQQFLTPAQEQLH 70

Query: 143 PLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPP 202
             ++                +   A+     P     P        A P    PS     
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130

Query: 203 PASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSP 262
                +           P      T  PP  +         S LSN +P          P
Sbjct: 131 NMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVP 190

Query: 263 LPASHPSKTAPPPASHPSNTAPPP 286
             +S   K+  P            
Sbjct: 191 KNSSLLKKSKLPFGLVIRPYQHLY 214

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.3 bits (101), Expect = 5e-04
 Identities = 31/193 (16%), Positives = 49/193 (25%), Gaps = 4/193 (2%)

Query: 24  QGSAGYGIPPSPAIIGGHFLLPRLPVTFTLKPHLLGG---HAPSPIELPTHSAPPPVNIP 80
           Q    YG   +P      F+ P+ P    +    +G     A   +       P    + 
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 81  SFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPIT 140
                         +   P + P   +     +    P+     P   P     S     
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130

Query: 141 APPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTA 200
               +N L    L+   P      +   PP   P      P S  SN +           
Sbjct: 131 NMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVP-SELSNASPDYIRSTLNAV 189

Query: 201 PPPASHPSNTALP 213
           P  +S    + LP
Sbjct: 190 PKNSSLLKKSKLP 202

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.9 bits (100), Expect = 5e-04
 Identities = 23/164 (14%), Positives = 38/164 (23%)

Query: 365 SHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVL 424
           SH      P A         P   P+   PP     +  +      P   A P +     
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 425 PSALPGKAPVSQSPISLPDAPAATPRGNFHRHSPAIHPSMPGPLPPVAQKRNASNREAPI 484
            +    +        +                +  + P +P  +    Q++         
Sbjct: 62  LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121

Query: 485 AEPIAPGPFPPGNSRQKSPVARPIIPGGTPTASPDPDVPPSTPP 528
            +P A          Q  P+          T    P  P   PP
Sbjct: 122 GQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPP 165

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 50.5 bits (120), Expect = 2e-06
 Identities = 26/138 (18%), Positives = 36/138 (26%), Gaps = 2/138 (1%)

Query: 241 PPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASH 300
               H+ +     ++    +   P    S  AP            P    S       S 
Sbjct: 4   HHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHS--PISTLSS 61

Query: 301 PSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTA 360
           P N   PP S  S+   P +     T     S  S     P +  S +         N  
Sbjct: 62  PINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGV 121

Query: 361 LPPASHPSNPAIPPASHP 378
           L   +HPS        H 
Sbjct: 122 LKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 25/137 (18%), Positives = 36/137 (26%), Gaps = 2/137 (1%)

Query: 264 PASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHP 323
              H        ++  +++   P    S  AP            P    S       S P
Sbjct: 5   HHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPI--STLSSP 62

Query: 324 SNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAI 383
            N   PP S  S+   P +     T     S  S     P +  S+          N  +
Sbjct: 63  INGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVL 122

Query: 384 PPASHPSNTAPPHASHP 400
              +HPS        H 
Sbjct: 123 KVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 46.6 bits (110), Expect = 3e-05
 Identities = 26/138 (18%), Positives = 37/138 (26%), Gaps = 2/138 (1%)

Query: 254 ASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPP--PASH 311
           A H +          S       + P+      A     +  P    P     P    S 
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61

Query: 312 PSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPA 371
           P N   PP S  S+   P +     T     S  S     P +  S++         N  
Sbjct: 62  PINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGV 121

Query: 372 IPPASHPSNTAIPPASHP 389
           +   +HPS        H 
Sbjct: 122 LKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 45.1 bits (106), Expect = 8e-05
 Identities = 26/138 (18%), Positives = 36/138 (26%), Gaps = 2/138 (1%)

Query: 276 ASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPP--PASH 333
           A H  +         S       + P+      A     +  P    P     P    S 
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61

Query: 334 PSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTA 393
           P N   PP S  S    P +     T     S  S     P +  S++         N  
Sbjct: 62  PINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGV 121

Query: 394 PPHASHPSNTALTPASHP 411
               +HPS    +   H 
Sbjct: 122 LKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 45.1 bits (106), Expect = 1e-04
 Identities = 22/135 (16%), Positives = 36/135 (26%), Gaps = 3/135 (2%)

Query: 287 ASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSS 346
           A H            S       + P+      A     +  P    P     P ++ SS
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61

Query: 347 ---KTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNT 403
                 PP +   S       S P+ P +  ++     + P     S+         +  
Sbjct: 62  PINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGV 121

Query: 404 ALTPASHPSNIAPPP 418
              PA    N+A   
Sbjct: 122 LKVPAHPSGNMASFT 136

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 26/138 (18%), Positives = 39/138 (28%), Gaps = 5/138 (3%)

Query: 296 PPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASH 355
               H  +     ++  +++   P    S  AP            P    S       S 
Sbjct: 4   HHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHS--PISTLSS 61

Query: 356 PSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIA 415
           P N   PP S  S+   P   H  +    P    S  +P  +S  +  + +    P    
Sbjct: 62  PINGMGPPFSVISS---PMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGL 118

Query: 416 PPPLFVPVLPSALPGKAP 433
              L VP  PS       
Sbjct: 119 NGVLKVPAHPSGNMASFT 136

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 23/138 (16%), Positives = 36/138 (26%), Gaps = 2/138 (1%)

Query: 221 ASHPSNTALPPASLPSKTAPPPASHLSNTAPP--PASHPYKTSPLPASHPSKTAPPPASH 278
           A H  +       + S       +  +       P+ HP     + +     +     S 
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61

Query: 279 PSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTA 338
           P N   PP S  S    P +     T     S  S     P +  S++         N  
Sbjct: 62  PINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGV 121

Query: 339 PPPASHSSKTAPPPASHP 356
               +H S        H 
Sbjct: 122 LKVPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 23/138 (16%), Positives = 36/138 (26%), Gaps = 3/138 (2%)

Query: 182 ASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPP 241
           A H  +         S       + P+     +  APS           P  L S     
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMA--APSLHPSLGPGIGSPGQLHS-PIST 58

Query: 242 PASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHP 301
            +S ++   PP +       P   S P+      ++     + P     S     P    
Sbjct: 59  LSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGL 118

Query: 302 SNTAPPPASHPSNTAPPP 319
           +     PA    N A   
Sbjct: 119 NGVLKVPAHPSGNMASFT 136

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 42.8 bits (100), Expect = 5e-04
 Identities = 26/132 (19%), Positives = 38/132 (28%), Gaps = 3/132 (2%)

Query: 318 PPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASH 377
               H  +     ++  +++   P    S  AP            P    S   I   S 
Sbjct: 4   HHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSP--ISTLSS 61

Query: 378 PSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQS 437
           P N   PP S  S+   PH+     T     S  S     P+  PV  S           
Sbjct: 62  PINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPM-NPVSSSEDIKPPLGLNG 120

Query: 438 PISLPDAPAATP 449
            + +P  P+   
Sbjct: 121 VLKVPAHPSGNM 132

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 16/150 (10%), Positives = 31/150 (20%)

Query: 194 SHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPP 253
           +        P+    ++A+ +  + S     ++ ALPP              ++      
Sbjct: 6   AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS 65

Query: 254 ASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPS 313
                     P+       P P +    +    +   S     PAS P          P 
Sbjct: 66  LQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPD 125

Query: 314 NTAPPPASHPSNTAPPPASHPSNTAPPPAS 343
                                         
Sbjct: 126 EPQVQAKIMAYLQQEQANRSKHEKLSTFGL 155

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 45.4 bits (107), Expect = 6e-05
 Identities = 20/152 (13%), Positives = 30/152 (19%), Gaps = 2/152 (1%)

Query: 250 APPPASHPYKTSPLPASHPSKTAPPPASHPSNTA--PPPASHPSKTAPPPASHPSNTAPP 307
           A         +    +S            P N A  PP     S     P S        
Sbjct: 6   AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS 65

Query: 308 PASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHP 367
              + +    P  +  S    P  S P +        S +T+ P +       L      
Sbjct: 66  LQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPD 125

Query: 368 SNPAIPPASHPSNTAIPPASHPSNTAPPHASH 399
                              S     +      
Sbjct: 126 EPQVQAKIMAYLQQEQANRSKHEKLSTFGLMC 157

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 29/173 (16%), Positives = 44/173 (25%)

Query: 201 PPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKT 260
             P          +   PSPA           S   K A PPA+   + A PPA    + 
Sbjct: 13  RRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72

Query: 261 SPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPA 320
           S    S PS    P      +              PP    +      +   S       
Sbjct: 73  SVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARE 132

Query: 321 SHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIP 373
                 A   ++  +  +  P +      P     P+       + P  P + 
Sbjct: 133 LGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLV 185

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 46.3 bits (108), Expect = 4e-05
 Identities = 30/173 (17%), Positives = 41/173 (23%)

Query: 140 TAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRT 199
             P    + P      T   A P         S     ARPPA+   + ARPPA    R 
Sbjct: 13  RRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72

Query: 200 APPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYK 259
           +    S PS    P   A          + P A  P            +          +
Sbjct: 73  SVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARE 132

Query: 260 TSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHP 312
                 +  +       S        P     + AP      +   P      
Sbjct: 133 LGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLV 185

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 46.3 bits (108), Expect = 4e-05
 Identities = 29/169 (17%), Positives = 44/169 (26%)

Query: 155 PTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPS 214
           P       L+ +   PA P   A     S     ARPPA+     A PPA      ++  
Sbjct: 17  PPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDE 76

Query: 215 KTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPP 274
            ++PS    P   A P      K + P A    +                     +    
Sbjct: 77  VSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGAR 136

Query: 275 PASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHP 323
             +  ++      S   +    P       AP      +   P      
Sbjct: 137 VRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLV 185

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 30/172 (17%), Positives = 48/172 (27%), Gaps = 3/172 (1%)

Query: 235 PSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTA 294
           P + APP  +      P PA    +      S   K A PPA+   + A PPA    + +
Sbjct: 17  PPRIAPPKLACR---TPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLS 73

Query: 295 PPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPAS 354
               S PS    P      +              PP    +      +  +S        
Sbjct: 74  VDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRAREL 133

Query: 355 HPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALT 406
                AL  ++  +  +  P +            P+       + P    L 
Sbjct: 134 GARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLV 185

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 43.2 bits (100), Expect = 4e-04
 Identities = 26/173 (15%), Positives = 37/173 (21%)

Query: 129 PTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNT 188
                    P            P+L       S    +A PPA+P  + ARPPA      
Sbjct: 13  RRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRL 72

Query: 189 ARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSN 248
           +    S PS    P      +     K +   A  P +                      
Sbjct: 73  SVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARE 132

Query: 249 TAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHP 301
                 +          S   +    P       AP      +   P      
Sbjct: 133 LGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLV 185

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 42.8 bits (99), Expect = 5e-04
 Identities = 28/180 (15%), Positives = 43/180 (23%), Gaps = 5/180 (2%)

Query: 177 AARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPS 236
           A R P        +     PS   P   +  S T+   K A  PA+   + A PPA    
Sbjct: 11  ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRL 70

Query: 237 KTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPP 296
           + +    S     +P     P   +        K + P A  P +               
Sbjct: 71  RLSVDEVS-----SPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELAS 125

Query: 297 PASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHP 356
                        +  ++      S        P       AP      +   P      
Sbjct: 126 CLQRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLV 185

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 42.8 bits (99), Expect = 5e-04
 Identities = 22/162 (13%), Positives = 37/162 (22%)

Query: 230 PPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASH 289
                 +   P PA           S   K +  PA+     A PPA      +    S 
Sbjct: 20  IAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSS 79

Query: 290 PSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTA 349
           PS    P      +              PP    +      +   S         +   A
Sbjct: 80  PSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRA 139

Query: 350 PPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSN 391
              ++  +  +  P +            P+       + P  
Sbjct: 140 LKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGL 181

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 25/164 (15%), Positives = 37/164 (22%)

Query: 274 PPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASH 333
                 +   P PA    +      S     A PPA+   + A PPA      +    S 
Sbjct: 20  IAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSS 79

Query: 334 PSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHPSNTAIPPASHPSNTA 393
           PS    P                     PP    +      +   S             A
Sbjct: 80  PSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRA 139

Query: 394 PPHASHPSNTALTPASHPSNIAPPPLFVPVLPSALPGKAPVSQS 437
              ++  +  + TP +      P     P          P    
Sbjct: 140 LKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPG 183

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 45.7 bits (108), Expect = 6e-05
 Identities = 16/97 (16%), Positives = 23/97 (23%), Gaps = 3/97 (3%)

Query: 264 PASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHP 323
           PA+  S   P  A+        PA+      P   + P+    P  +       PP    
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATP---APPALGAAPTGDPKPKKNKKPKNPTPPRPAG 58

Query: 324 SNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTA 360
            N                    +  A      P   A
Sbjct: 59  DNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGA 95

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 44.6 bits (105), Expect = 2e-04
 Identities = 15/85 (17%), Positives = 22/85 (25%)

Query: 279 PSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTA 338
           P+    P     +         P+  APP         P P  +     P P     + A
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 339 PPPASHSSKTAPPPASHPSNTALPP 363
              A H++           NT    
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANF 86

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 13/91 (14%), Positives = 22/91 (24%), Gaps = 4/91 (4%)

Query: 260 TSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPP 319
           TSP      + T        +   P   + P+    P  +       PP     N     
Sbjct: 6   TSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAA 65

Query: 320 ASHPSNTAPPPASHPSNTAP----PPASHSS 346
                          +  A     PP + ++
Sbjct: 66  GHATLREHLRDIKAENTDANFYVCPPPTGAT 96

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 17/93 (18%), Positives = 23/93 (24%)

Query: 301 PSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTA 360
           P+    P     +         P+  APP         P P  +     P P     + A
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 361 LPPASHPSNPAIPPASHPSNTAIPPASHPSNTA 393
              A H +           NT       P  T 
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANFYVCPPPTG 94

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 43.8 bits (103), Expect = 3e-04
 Identities = 15/91 (16%), Positives = 22/91 (24%)

Query: 242 PASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHP 301
           P S  +                PA      AP     P     P    P + A   A+  
Sbjct: 5   PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVA 64

Query: 302 SNTAPPPASHPSNTAPPPASHPSNTAPPPAS 332
           +  A          A    ++     PP  +
Sbjct: 65  AGHATLREHLRDIKAENTDANFYVCPPPTGA 95

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 43.0 bits (101), Expect = 5e-04
 Identities = 12/92 (13%), Positives = 21/92 (22%), Gaps = 2/92 (2%)

Query: 275 PASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHP 334
           P S  +          +     PA      AP     P     P   +P+   P   +  
Sbjct: 5   PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKP--KNPTPPRPAGDNAT 62

Query: 335 SNTAPPPASHSSKTAPPPASHPSNTALPPASH 366
                       +      +  +    PP + 
Sbjct: 63  VAAGHATLREHLRDIKAENTDANFYVCPPPTG 94

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 14/80 (17%), Positives = 20/80 (25%)

Query: 319 PASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASHP 378
           P S  +          +     PA  +   AP     P     P    P  PA   A+  
Sbjct: 5   PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVA 64

Query: 379 SNTAIPPASHPSNTAPPHAS 398
           +  A          A    +
Sbjct: 65  AGHATLREHLRDIKAENTDA 84

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 11/97 (11%), Positives = 20/97 (20%), Gaps = 6/97 (6%)

Query: 308 PASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHP 367
           P S  +          +     P        P   +  +    P  +       PP    
Sbjct: 5   PTSPGTPGVAAATQAANGGPATP------APPALGAAPTGDPKPKKNKKPKNPTPPRPAG 58

Query: 368 SNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTA 404
            N  +          +      +  A  +   P   A
Sbjct: 59  DNATVAAGHATLREHLRDIKAENTDANFYVCPPPTGA 95

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 42.3 bits (99), Expect = 9e-04
 Identities = 13/91 (14%), Positives = 21/91 (23%)

Query: 297 PASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHP 356
           P S  +          +     PA      AP     P     P      + A   A+  
Sbjct: 5   PTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVA 64

Query: 357 SNTALPPASHPSNPAIPPASHPSNTAIPPAS 387
           +  A          A    ++      P  +
Sbjct: 65  AGHATLREHLRDIKAENTDANFYVCPPPTGA 95

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 45.2 bits (106), Expect = 7e-05
 Identities = 19/96 (19%), Positives = 29/96 (30%)

Query: 281 NTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPP 340
           N        P    PPP++      P  A+  +  A   A   S  AP P S        
Sbjct: 20  NGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFS 79

Query: 341 PASHSSKTAPPPASHPSNTALPPASHPSNPAIPPAS 376
             S++ K     A+   +  +   S  +      A 
Sbjct: 80  SLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAAR 115

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 44.9 bits (106), Expect = 9e-05
 Identities = 28/117 (23%), Positives = 37/117 (31%), Gaps = 8/117 (6%)

Query: 215 KTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPP 274
           +T P   +                   PA   S+ AP  ++   +   + A         
Sbjct: 328 QTFPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAP--SADAAQMKEMMAMMQKMQQQQ 385

Query: 275 PASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPA 331
            A  P   APPP  +P +  PP         PP    P    PPP   P   APP A
Sbjct: 386 AAYPPQGYAPPPQGYPPQGYPPQG------YPPQGYPPQGYPPPPQGAPPQGAPPAA 436

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 24/109 (22%), Positives = 30/109 (27%), Gaps = 3/109 (2%)

Query: 237 KTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTA---PPPASHPSKT 293
           +T P   +                + +PA   S  AP   +                   
Sbjct: 328 QTFPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAA 387

Query: 294 APPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPA 342
            PP    P     PP  +P    PP    P    PPP   P   APP A
Sbjct: 388 YPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAA 436

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 23/112 (20%), Positives = 31/112 (27%), Gaps = 6/112 (5%)

Query: 242 PASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHP 301
           P            +   K +         +   P++  +      A          A  P
Sbjct: 331 PWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPP 390

Query: 302 SNTAPPPASHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPA 353
              APPP         PP  +P    PP    P    PPP     + APP A
Sbjct: 391 QGYAPPP------QGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAA 436

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 23/112 (20%), Positives = 31/112 (27%), Gaps = 3/112 (2%)

Query: 263 LPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASH 322
            P            +     A         +   P++  +      A          A  
Sbjct: 330 FPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYP 389

Query: 323 PSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALPPASHPSNPAIPP 374
           P   APPP  +P     PP  +  +  PP    P     PP   P  PA PP
Sbjct: 390 PQGYAPPPQGYPPQG-YPPQGYPPQGYPPQGYPPPPQGAPPQGAP--PAAPP 438

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 20/132 (15%), Positives = 36/132 (27%), Gaps = 6/132 (4%)

Query: 253 PASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAP---PPASHPSNTAPPPA 309
              H + +  +P        P  +   + +    A HP  T P   PP         PP 
Sbjct: 5   HHHHHHSSGLVPRG-SHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPD 63

Query: 310 SHPSNTAPPPASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTAL--PPASHP 367
           +   ++               +  P+          +  + PPA+  +   L   P   P
Sbjct: 64  TVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEP 123

Query: 368 SNPAIPPASHPS 379
               +   S   
Sbjct: 124 DPVRVEEVSRRI 135

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 44.0 bits (103), Expect = 2e-04
 Identities = 21/137 (15%), Positives = 29/137 (21%), Gaps = 10/137 (7%)

Query: 175 SNAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASL 234
           S+      S            PS +    AS       P  T P PA        PP   
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAP-------PPPPA 55

Query: 235 PSKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTA 294
           P+   PP      +        P   +    +  +                      +  
Sbjct: 56  PAAGNPPDTVTGDSVLQRILRGP---TGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAV 112

Query: 295 PPPASHPSNTAPPPASH 311
           P    HP     P    
Sbjct: 113 PGLYHHPVPEPDPVRVE 129

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 27/121 (22%), Positives = 37/121 (30%), Gaps = 7/121 (5%)

Query: 260 TSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPP 319
           +S     H S   P          P  +   + +    A HP  T P PA  P     P 
Sbjct: 3   SSHHHHHHSSGLVPRG---SHMVIPSASVTSAASDFLAALHPPVTVPDPA--PPPPPAPA 57

Query: 320 ASHPSNTAPPPASHPSNTAPP--PASHSSKTAPPPASHPSNTALPPASHPSNPAIPPASH 377
           A +P +T    +        P  P + S   A      P   A   A   +  A+P   H
Sbjct: 58  AGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYH 117

Query: 378 P 378
            
Sbjct: 118 H 118

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.2 bits (101), Expect = 3e-04
 Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 2/127 (1%)

Query: 205 SHPSNTALPSKTAP-SPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPL 263
           S   +    S   P        + ++  A+     A  P   + + APPP   P   +P 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP- 61

Query: 264 PASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASHPSNTAPPPASHP 323
           P +    +               +  P+          +  + PPA+  +         P
Sbjct: 62  PDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVP 121

Query: 324 SNTAPPP 330
                  
Sbjct: 122 EPDPVRV 128

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 42.8 bits (100), Expect = 4e-04
 Identities = 23/119 (19%), Positives = 33/119 (27%), Gaps = 3/119 (2%)

Query: 90  SAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSL-IPTTPVASPPPITAPPLVNVL 148
           S+         L+P       PS +     +          T P  +PPP  AP   N  
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGN-- 60

Query: 149 PAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHP 207
           P  ++   + L   L     P  +  + A R                  R  P    HP
Sbjct: 61  PPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHP 119

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 42.8 bits (100), Expect = 5e-04
 Identities = 19/134 (14%), Positives = 31/134 (23%), Gaps = 4/134 (2%)

Query: 304 TAPPPASHPSNTAPP-PASHPSNTAPPPASHPSNTAPPPASHSSKTAPPPASHPSNTALP 362
           ++     H S   P        + +   A+     A  P       APPP   P+    P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 363 PASHPSNPAIPPASHPSNTAIPPASHPSNTAPPHASHPSNTALTPASHPSNIAPPPLFVP 422
                 +        P+    P  +  +               +         P     P
Sbjct: 63  DTVTGDSVLQRILRGPTG---PGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHP 119

Query: 423 VLPSALPGKAPVSQ 436
           V          VS+
Sbjct: 120 VPEPDPVRVEEVSR 133

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 42.4 bits (99), Expect = 6e-04
 Identities = 24/131 (18%), Positives = 32/131 (24%), Gaps = 6/131 (4%)

Query: 192 PASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAP 251
              H   +   P         PS +  S AS       PP ++P    PPP +  +   P
Sbjct: 5   HHHHHHSSGLVPRGSHMVI--PSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 252 PPASHPYKTSPLPASHPSKTAPPPASHPSNTAPPPASHPSKTAPPPASHPSNTAPPPASH 311
              +       +       T P   S            P   A  P        P    H
Sbjct: 63  DTVTGDSVLQRIL---RGPTGPGTTSLAPAVRYGRQPGPEAPASAP-PAAGRAVPGLYHH 118

Query: 312 PSNTAPPPASH 322
           P     P    
Sbjct: 119 PVPEPDPVRVE 129

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 44.6 bits (104), Expect = 1e-04
 Identities = 25/217 (11%), Positives = 47/217 (21%), Gaps = 3/217 (1%)

Query: 90  SAPFDMAPPPSLIPTNPVASPPSITAPPPVNMAPPPSLIPTTPVASPPPITAPPLVNVL- 148
           +  F          +       S  +    N A   +                   +   
Sbjct: 16  NLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETA 75

Query: 149 -PAPSLIPTTPLASPLSSKAFPPASPPSNAARPPASHPSNTARPPASHPSRTAPPPASHP 207
            PA +   TT  A   S+      +    A  P A     + +   + P  T     S P
Sbjct: 76  SPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKP 135

Query: 208 SNTALPSKTAPSPASHPSNTALPPASLPSKTAPPPASHLSNTAPPPASHPYKTSPLPASH 267
           +  A  ++    P    +             +          A    +    +  L +  
Sbjct: 136 AAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRR 195

Query: 268 PSKTAPPPASHPSNT-APPPASHPSKTAPPPASHPSN 303
                   AS  +   A    +  +K           
Sbjct: 196 TGHLVNEKASKEAKVQALSNTNSKAKDHASVGGEEFK 232

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 42.3 bits (98), Expect = 8e-04
 Identities = 30/226 (13%), Positives = 49/226 (21%), Gaps = 13/226 (5%)

Query: 56  HLLGGHAPSPIELPTHSAPPPVNIPSFSPSTPAVSAPFDMAPPPSLIPTNPVASPPSITA 115
           H   GH      L        V   S   +T  VS   + +   +        +  +   
Sbjct: 5   HHHHGHHHQLENLYFQGEETAVPENS-GANTELVSGESEHSTNEADKQNEGEHARENKLE 63

Query: 116 PPPVNMAPPPSLIPTTPVASPPPITAPPLVNVLPAPSLIPTTPLASPLSSKAFPPASPPS 175
                          +P ++    T          P    +  +A        P A    
Sbjct: 64  KAEGVATASE---TASPASNEAATTETAEAASAAKPEEKASEVVAET------PSAEAKP 114

Query: 176 NAARPPASHPSNTARPPASHPSRTAPPPASHPSNTALPSKTAPSPASHPSNTALPPASLP 235
            + +   + P  T +   S P+  A                       P           
Sbjct: 115 KSDKETEAKPEATNQGDESKPAAEANKT---EKEVQPDVPKNTEKTLKPKEIKFNSWEEL 171

Query: 236 SKTAPPPASHLSNTAPPPASHPYKTSPLPASHPSKTAPPPASHPSN 281
            K  P      +           +T  L     SK A   A   +N
Sbjct: 172 LKWEPGAREDDAINRGSVVLASRRTGHLVNEKASKEAKVQALSNTN 217

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	955
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	97.72
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	97.03
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	96.88
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	95.38
2l34_A	33	TYRO protein tyrosine kinase-binding protein; immu	93.61
2klu_A	70	T-cell surface glycoprotein CD4; cell membrane, di	93.44
2k9y_A	41	Ephrin type-A receptor 2; receptor tyrosine kinase	92.59
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	85.98
2l8s_A	54	Integrin alpha-1; transmembrane region, detergent	85.86
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	83.81
2knc_B	79	Integrin beta-3; transmembrane signaling, protein	81.69
2knc_A	54	Integrin alpha-IIB; transmembrane signaling, prote	81.6

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=97.72  E-value=1.1e-05  Score=62.85  Aligned_cols=34  Identities=21%  Similarity=0.275  Sum_probs=27.4

Q ss_pred             ccCCCCCcceehhhHHHHHHHHHHHHHHHHHHHhh
Q 002185          871 QKYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKY  905 (955)
Q Consensus       871 kKkgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRR  905 (955)
                      .++++|.|+|+|||+|+++++++++++++|+ +||
T Consensus         4 ~~~~ls~GaIAGiVvG~v~gv~li~~l~~~~-~rr   37 (38)
T 2k1k_A            4 VSRGLTGGEIVAVIFGLLLGAALLLGILVFR-SRR   37 (38)
T ss_dssp             SSTTCCHHHHHHHHHHHHHHHHHHHHHHHHH-HCC
T ss_pred             CCCCCCCCceeeeehHHHHHHHHHHHHHHHH-eec
Confidence            3678999999999999999988887776554 443

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=97.03  E-value=0.00042  Score=55.92  Aligned_cols=35  Identities=14%  Similarity=0.111  Sum_probs=25.4

Q ss_pred             CCCCcceehhhHHHHHHHHHHHHHHHHHHHhhccc
Q 002185          874 GLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSH  908 (955)
Q Consensus       874 gLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR  908 (955)
                      +.+.+.|++.|+|++++++++++++||++.|||++
T Consensus         6 ~s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~   40 (44)
T 2l2t_A            6 HARTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIK   40 (44)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             CCCcceEEEeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence            44778899999999998888887766664443333

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=96.88  E-value=0.00076  Score=54.33  Aligned_cols=33  Identities=9%  Similarity=0.095  Sum_probs=24.4

Q ss_pred             CCCcceehhhHHHHHHHHHHHHHHHHHHHhhccc
Q 002185          875 LSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSH  908 (955)
Q Consensus       875 LSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR  908 (955)
                      .+.+.||+.|+|++++++++++++||+ +|||++
T Consensus         8 s~~~~IA~gVVgGv~~~~ii~~~~~~~-~RRr~~   40 (44)
T 2ks1_B            8 PKIPSIATGMVGALLLLLVVALGIGLF-MRRRHI   40 (44)
T ss_dssp             SCSSSSTHHHHHHHHHHHHHHHHHHHH-HHTTTC
T ss_pred             CCcceEEeehhHHHHHHHHHHHHHHHH-hhhhHh
Confidence            467889999999998888887766565 444443

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=95.38  E-value=0.0083  Score=48.52  Aligned_cols=29  Identities=17%  Similarity=0.273  Sum_probs=17.8

Q ss_pred             cceehhhHHHHHHHHHHHHHHHHHHHhhccc
Q 002185          878 GMIAIVVLSAFVAVVLCSAAAWVLLFKYKSH  908 (955)
Q Consensus       878 GaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR  908 (955)
                      ..|+++|+| +++ ++++++++++++|||+.
T Consensus        12 ~~Ia~~vVG-vll-~vi~~l~~~~~~RRR~~   40 (44)
T 2jwa_A           12 TSIISAVVG-ILL-VVVLGVVFGILIKRRQQ   40 (44)
T ss_dssp             HHHHHHHHH-HHH-HHHHHHHHHHHHHHHCS
T ss_pred             cchHHHHHH-HHH-HHHHHHHHHhheehhhh
Confidence            358999999 444 44445555665666654

>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B

Probab=93.61  E-value=0.038  Score=42.21  Aligned_cols=25  Identities=32%  Similarity=0.421  Sum_probs=20.8

Q ss_pred             CCCCcceehhhHHHHHHHHHHHHHH
Q 002185          874 GLSGGMIAIVVLSAFVAVVLCSAAA  898 (955)
Q Consensus       874 gLSkGaIAGIVLGSVVlVVLLsAaa  898 (955)
                      +++.|.|+||++|.+++++++.+++
T Consensus         3 ~L~~gaIaGIVvgdi~~t~~i~~~v   27 (33)
T 2l34_A            3 TVSPGVLAGIVVGDLVLTVLIALAV   27 (33)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcceEEeEeHHHHHHHHHHHHHH
Confidence            4789999999999999888766654

>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}

Probab=93.44  E-value=0.057  Score=47.23  Aligned_cols=31  Identities=19%  Similarity=0.270  Sum_probs=26.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 002185          883 VVLSAFVAVVLCSAAAWVLLFKYKSHACQAE  913 (955)
Q Consensus       883 IVLGSVVlVVLLsAaa~LLLLRRRRR~sqa~  913 (955)
                      ||||++++++++.++.+||..|++.|.++++
T Consensus        12 ivlGg~~~lll~~glcI~ccvkcrhRrrqAe   42 (70)
T 2klu_A           12 IVLGGVAGLLLFIGLGIFFSVRSRHRRRQAE   42 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCSSSCT
T ss_pred             HHHhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            8999999999999999997787777777664

>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}

Probab=92.59  E-value=0.061  Score=41.41  Aligned_cols=16  Identities=31%  Similarity=0.139  Sum_probs=7.3

Q ss_pred             eehhhHHHHHHHHHHH
Q 002185          880 IAIVVLSAFVAVVLCS  895 (955)
Q Consensus       880 IAGIVLGSVVlVVLLs  895 (955)
                      +++|++|+++++++++
T Consensus        12 ~~~I~~~vv~Gv~ll~   27 (41)
T 2k9y_A           12 NLAVIGGVAVGVVLLL   27 (41)
T ss_dssp             STHHHHHHHHHHHHHH
T ss_pred             eEEEEeehhHHHHHHH
Confidence            3444444444444444

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=85.98  E-value=0.57  Score=37.82  Aligned_cols=36  Identities=14%  Similarity=0.069  Sum_probs=25.7

Q ss_pred             CcceehhhHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 002185          877 GGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQAE  913 (955)
Q Consensus       877 kGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~sqa~  913 (955)
                      ..-+.+|++|.+.+++++++++ ++++-..||+++.+
T Consensus         7 ~s~~~~IA~gVVgGv~~~~ii~-~~~~~~~RRr~~~~   42 (44)
T 2ks1_B            7 GPKIPSIATGMVGALLLLLVVA-LGIGLFMRRRHIVR   42 (44)
T ss_dssp             CSCSSSSTHHHHHHHHHHHHHH-HHHHHHHHTTTCCS
T ss_pred             CCCcceEEeehhHHHHHHHHHH-HHHHHHhhhhHhhc
Confidence            3456678887777777766554 77788888887754

>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}

Probab=85.86  E-value=0.69  Score=38.94  Aligned_cols=39  Identities=15%  Similarity=0.218  Sum_probs=24.0

Q ss_pred             CCCcceehhhHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 002185          875 LSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQAE  913 (955)
Q Consensus       875 LSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~sqa~  913 (955)
                      ...++|++.++|+++++++++.+.|-|-|-+|++..+.+
T Consensus         7 vp~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~~~~~~   45 (54)
T 2l8s_A            7 VPLWVILLSAFAGLLLLMLLILALWKIGFFKRPLKKKME   45 (54)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCC
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCcchhh
Confidence            456677777777777766666666666554455544433

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=83.81  E-value=1  Score=36.46  Aligned_cols=34  Identities=0%  Similarity=0.077  Sum_probs=25.5

Q ss_pred             eehhhHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 002185          880 IAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQAE  913 (955)
Q Consensus       880 IAGIVLGSVVlVVLLsAaa~LLLLRRRRR~sqa~  913 (955)
                      ..+|+.|.+.+++++++++.++++-.|||+.+.+
T Consensus         9 ~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~k   42 (44)
T 2l2t_A            9 TPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKKK   42 (44)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred             cceEEEeehHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence            4567787777788888888777778887777653

>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=81.69  E-value=0.69  Score=40.93  Aligned_cols=20  Identities=15%  Similarity=0.160  Sum_probs=8.4

Q ss_pred             CCCcceehhhHHHHHHHHHH
Q 002185          875 LSGGMIAIVVLSAFVAVVLC  894 (955)
Q Consensus       875 LSkGaIAGIVLGSVVlVVLL  894 (955)
                      .+..+|+|-++|+++++.++
T Consensus         8 ~n~~~Iv~gvi~gilliGll   27 (79)
T 2knc_B            8 PDILVVLLSVMGAILLIGLA   27 (79)
T ss_dssp             SCSHHHHHHHHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHH
Confidence            34444444444444433333

>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}

Probab=81.60  E-value=1  Score=37.79  Aligned_cols=36  Identities=14%  Similarity=0.217  Sum_probs=23.2

Q ss_pred             CCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhccc
Q 002185          873 YGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSH  908 (955)
Q Consensus       873 kgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR  908 (955)
                      .+.-.++|++.++|+++++++++.+.|-|-|-+|++
T Consensus         8 ~~vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~   43 (54)
T 2knc_A            8 RAIPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNR   43 (54)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence            345667777777777777777777766655544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00