Citrus Sinensis ID: 002199
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 954 | 2.2.26 [Sep-21-2011] | |||||||
| Q5R8D8 | 494 | DnaJ homolog subfamily C | yes | no | 0.403 | 0.779 | 0.293 | 5e-34 | |
| Q99615 | 494 | DnaJ homolog subfamily C | yes | no | 0.403 | 0.779 | 0.291 | 5e-34 | |
| Q9QYI3 | 494 | DnaJ homolog subfamily C | yes | no | 0.403 | 0.779 | 0.289 | 2e-33 | |
| Q54IP0 | 539 | DnaJ homolog subfamily C | yes | no | 0.407 | 0.721 | 0.270 | 7e-27 | |
| Q84JR9 | 682 | TPR repeat-containing thi | no | no | 0.340 | 0.476 | 0.272 | 3e-21 | |
| Q9SIN1 | 691 | Inactive TPR repeat-conta | no | no | 0.353 | 0.487 | 0.244 | 2e-20 | |
| Q9HGM9 | 476 | DnaJ homolog subfamily C | yes | no | 0.177 | 0.355 | 0.333 | 2e-19 | |
| Q9MAH1 | 699 | TPR repeat-containing thi | no | no | 0.344 | 0.470 | 0.264 | 5e-17 | |
| F4IXE4 | 730 | TPR repeat-containing thi | no | no | 0.379 | 0.495 | 0.251 | 7e-17 | |
| Q28IV3 | 657 | RNA polymerase II-associa | no | no | 0.105 | 0.153 | 0.396 | 4e-12 |
| >sp|Q5R8D8|DNJC7_PONAB DnaJ homolog subfamily C member 7 OS=Pongo abelii GN=DNAJC7 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 147 bits (370), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 133/453 (29%), Positives = 199/453 (43%), Gaps = 68/453 (15%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
E ++ +GN Y + EA ++YT+ I+ P + + Y NRAAT + LGR
Sbjct: 29 ETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASY----------YGNRAATLMMLGRF 78
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE 568
REAL D + +D +F++ +R KCHL LG A + + L LD + +
Sbjct: 79 REALGDAQQSVRLDDSFVRGRLREGKCHLSLGNAMAACRSFQRALE------LDHK-NAQ 131
Query: 569 AADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYM 628
A + A V EY + E++ ++R AL + + +KA+ L M
Sbjct: 132 AQQEFKNANAVMEYEKIAETDFEKRDFRKVVFCMDR---ALEFAPACHRFKILKAECLAM 188
Query: 629 LRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSY-FCIGKLEVAL 687
L +Y EA + L + N A L G L+ I K+ F + L +A
Sbjct: 189 LGRYPEAQSVASDILRMDSTN-ADALYVRGLC------LYYEDCIEKAVQFFVQALRMAP 241
Query: 688 DLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVA 747
D + I+ R +AL K GN+AFK G Y A E YT A
Sbjct: 242 D-----HEKACIACR--------------NAKALKAKKEDGNKAFKEGNYKLAYELYTEA 282
Query: 748 LSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIR 807
L + + A +CNR L ++ DAI DC+ A+ LD+ Y KA RRA +
Sbjct: 283 LGIDPNNIKTNAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTE 342
Query: 808 DYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEEDAKKGEPLD 867
Y +A D +++ EK K+ + + L S + + KK + D
Sbjct: 343 QYEEAVRDYEKVYQT------EKTKEHK---------------QLLKSAQLELKKSKRRD 381
Query: 868 FYLILGVKASDTAADIKKAYRKAALKHHPDKRS 900
+Y ILGV + + +IKKAYRK AL HHPD+ S
Sbjct: 382 YYKILGVDKNASEDEIKKAYRKRALMHHPDRHS 414
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Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes. Recruits NR1I3 to the cytoplasm. Pongo abelii (taxid: 9601) |
| >sp|Q99615|DNJC7_HUMAN DnaJ homolog subfamily C member 7 OS=Homo sapiens GN=DNAJC7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 147 bits (370), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 132/453 (29%), Positives = 200/453 (44%), Gaps = 68/453 (15%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
E ++ +GN Y + EA ++YT+ I+ P + + Y NRAAT + LGR
Sbjct: 29 ETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASY----------YGNRAATLMMLGRF 78
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE 568
REAL D + +D +F++ ++R KCHL LG A + + L LD + +
Sbjct: 79 REALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALE------LDHK-NAQ 131
Query: 569 AADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYM 628
A + A V EY + E++ ++R AL + + +KA+ L M
Sbjct: 132 AQQEFKNANAVMEYEKIAETDFEKRDFRKVVFCMDR---ALEFAPACHRFKILKAECLAM 188
Query: 629 LRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSY-FCIGKLEVAL 687
L +Y EA + L + N A L G L+ I K+ F + L +A
Sbjct: 189 LGRYPEAQSVASDILRMDSTN-ADALYVRGLC------LYYEDCIEKAVQFFVQALRMAP 241
Query: 688 DLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVA 747
D + I+ R +AL K GN+AFK G Y A E YT A
Sbjct: 242 D-----HEKACIACR--------------NAKALKAKKEDGNKAFKEGNYKLAYELYTEA 282
Query: 748 LSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIR 807
L + + A +CNR L ++ DAI DC+ A+ LD+ Y KA RRA +
Sbjct: 283 LGIDPNNIKTNAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTE 342
Query: 808 DYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEEDAKKGEPLD 867
Y +A D +++ EK K+ + + L + + + KK + D
Sbjct: 343 QYEEAVRDYEKVYQT------EKTKEHK---------------QLLKNAQLELKKSKRKD 381
Query: 868 FYLILGVKASDTAADIKKAYRKAALKHHPDKRS 900
+Y ILGV + + +IKKAYRK AL HHPD+ S
Sbjct: 382 YYKILGVDKNASEDEIKKAYRKRALMHHPDRHS 414
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Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes. Recruits NR1I3 to the cytoplasm. Homo sapiens (taxid: 9606) |
| >sp|Q9QYI3|DNJC7_MOUSE DnaJ homolog subfamily C member 7 OS=Mus musculus GN=Dnajc7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 131/453 (28%), Positives = 198/453 (43%), Gaps = 68/453 (15%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
E ++ +GN Y + EA ++YT+ I+ P + + Y NRAAT + LGR
Sbjct: 29 ESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPNNASY----------YGNRAATLMMLGRF 78
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE 568
REAL D + +D +F++ ++R KCHL LG A + + L LD + +
Sbjct: 79 REALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALE------LDHK-NAQ 131
Query: 569 AADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYM 628
A + A V EY + E++ ++R AL + + +KA+ L M
Sbjct: 132 AQQEFKNANAVMEYEKIAEVDFEKRDFRKVVFCMDR---ALEFAPACHRFKILKAECLAM 188
Query: 629 LRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSY-FCIGKLEVAL 687
L +Y EA + L + N A L G L+ I K+ F + L +A
Sbjct: 189 LGRYPEAQFVASDILRMDSTN-ADALYVRGLC------LYYEDCIEKAVQFFVQALRMAP 241
Query: 688 DLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVA 747
D E + +AL K GN+AFK G Y A E YT A
Sbjct: 242 DH-------------------EKACVACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEA 282
Query: 748 LSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIR 807
L + + A +CNR L Q+ DAI DC+ A+ LD+ Y KA RRA +
Sbjct: 283 LGIDPNNIKTNAKLYCNRGTVNSKLRQLEDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTE 342
Query: 808 DYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEEDAKKGEPLD 867
+ +A D +++ EK K+ + + L + + + KK + D
Sbjct: 343 QFEEAVRDYEKVY------QTEKTKEHK---------------QLLKNAQLELKKSKRKD 381
Query: 868 FYLILGVKASDTAADIKKAYRKAALKHHPDKRS 900
+Y ILGV + + +IKKAYRK AL HHPD+ S
Sbjct: 382 YYKILGVDKNASEDEIKKAYRKRALMHHPDRHS 414
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Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes (By similarity). Recruits NR1I3 to the cytoplasm. Mus musculus (taxid: 10090) |
| >sp|Q54IP0|DNJC7_DICDI DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 125/462 (27%), Positives = 206/462 (44%), Gaps = 73/462 (15%)
Query: 452 RLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISL---GRM 508
+ +GN +K + +A YTQ I E + I Y NRAA +++ +
Sbjct: 7 KTQGNNYFKQSQYMDAIRCYTQAI------ELSNGTI---AAYYGNRAAAYLAICTKSSL 57
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE 568
+++++D + A ++ +F+K Y RA+K ++ L + + A A + R + +
Sbjct: 58 QDSIKDSLKAIELERSFIKGYTRASKAYIHLAQYDQA------------ASIIVRGLVFD 105
Query: 569 AADG--LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADAL 626
+ LQ+ ++ L ++K SS+L +I LS S + +L +KA L
Sbjct: 106 PRNNELLQEKNQIDSIQRTISSLTKEKALSNPSSSLNQIENVLSQSKYNTQLQVLKARVL 165
Query: 627 YMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVA 686
L++Y +A L L +N + S+ Y +A
Sbjct: 166 IELKQYPQASNLMTTLLQEDSRNPEYLYVRGLSLYYQ-----------------NNFPLA 208
Query: 687 LDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTV 746
L Q S Y + ES ++L +R++ K GNE F+S Y A + +T
Sbjct: 209 LQHFQN-------SLTYDPDYSESRVALK-RLRSIESKKKEGNEYFQSKNYQAAYDSFTE 260
Query: 747 ALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMI 806
ALS + + + + NRAAAL L +I++AI DC+ A+ +D NY KA RRA
Sbjct: 261 ALSIDPKLETMNSQLYSNRAAALVHLNRISEAINDCTSAVTIDPNYGKAYIRRAQCQMKQ 320
Query: 807 RDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQA-CRHLSSMEEDAKKGEP 865
+Y A D EKA QS P R++++A H S+ +
Sbjct: 321 ENYEDAVRDY------------EKA-QSLDPENGELQRNIKEAKIAHKKSLRK------- 360
Query: 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQE 907
D+Y ILGV +IKKAYRK AL++HPDK ++ +E++
Sbjct: 361 -DYYKILGVSKEAGETEIKKAYRKLALQYHPDKNNQLPEEEK 401
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q84JR9|TTL4_ARATH TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis thaliana GN=TTL4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 110/403 (27%), Positives = 188/403 (46%), Gaps = 78/403 (19%)
Query: 455 GNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALED 514
GN Y+ N EA Y + I+ P + SNRAA + GR+ EA+++
Sbjct: 218 GNVMYRKGNYAEALALYDRAISLSPENPAY----------RSNRAAALAASGRLEEAVKE 267
Query: 515 CMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQ 574
C+ A DP++ + + R A +L LGE ENA+ + + C D+ AD LQ
Sbjct: 268 CLEAVRCDPSYARAHQRLASLYLRLGEAENARRHL-----CVSGQCPDQ------AD-LQ 315
Query: 575 KAQKVTEYIN-CSGKLLEQKTSEAASSALERINEALSISS-CSEKLLEMKADALYMLRKY 632
+ Q + +++ C+ E + + + I+ A++ + S +L+ KA+A L +
Sbjct: 316 RLQTLEKHLRLCT----EARKIGDWRTVISEIDAAIANGADSSPQLVACKAEAFLRLHQI 371
Query: 633 EEAIQLC---------EHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKL 683
+++ LC HT P EK F ++ D Y L + ++ +G+
Sbjct: 372 KDS-DLCISSIPRLDHHHTQP-PEKLFG-IVCD----AYVLC------VQAQVDMALGRF 418
Query: 684 EVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEH 743
E A + K+E+ +I E+ +S+ V+ + ++ GNE F SGRY+EA
Sbjct: 419 ENA---IVKVERAMTIDHSNSPEV----VSVLNNVKNVAKARTRGNELFSSGRYSEA--- 468
Query: 744 YTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803
+VA ++ F ++ +CNRAA LG ++ DC+ A+ + +YTKA+ RRAA +
Sbjct: 469 -SVAYGDGLKLDAFNSVLYCNRAACWFKLGMWEKSVDDCNQALRIQPSYTKALLRRAASY 527
Query: 804 -------EMIRDY----------TQAASDLQRLVSILENQSAE 829
+ +RDY ++ A LQR + L N+S E
Sbjct: 528 GKLGRWEDAVRDYEVLRKELPGDSEVAESLQRARNALSNKSEE 570
|
Involved in osmotic and salt stress tolerance. May play a role in the control of meristematic cell size during osmotic stress. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIN1|TTL3_ARATH Inactive TPR repeat-containing thioredoxin TTL3 OS=Arabidopsis thaliana GN=TTL3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 100/409 (24%), Positives = 194/409 (47%), Gaps = 72/409 (17%)
Query: 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCY-SNRAATRIS 504
E E + GN Y+ + +EA Y + I I P Y SNRAA +
Sbjct: 218 ENPEELKRMGNDMYRRGSFSEALSLYDRAI-----------LISPGNAAYRSNRAAALTA 266
Query: 505 LGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRR 564
L R+ EA+++C+ A +DP++ + + R A +L LGE ENA+ + +C +
Sbjct: 267 LRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRH----------ICFSGQ 316
Query: 565 ITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISS-CSEKLLEMKA 623
+A LQ+ Q + +++ + E + +A++ + A++ + S +L+ KA
Sbjct: 317 CPDQA--DLQRLQTLEKHLR---RCWEARKIGDWKTAIKETDAAIANGADSSPQLVACKA 371
Query: 624 DALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSY-FCI-G 681
+A L++ E++ C +P + ++ +S ++ + ++ ++Y CI
Sbjct: 372 EAFLRLKQIEDS-DFCVSCIPRLDHHY-----------HSQPQVKLFGMVVEAYVLCIQA 419
Query: 682 KLEVALDLLQ----KLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRY 737
++++AL + K E+ + D+ E++ S+ V+ ++ ++ GNE F SGR+
Sbjct: 420 QVDMALGRFENAVVKAERAAML-DQTNPEVV----SVLNNVKMVVRARTRGNELFSSGRF 474
Query: 738 TEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVS 797
+EA Y L + + ++ +CNRAA LG ++ DC+ A+ +Y KA+
Sbjct: 475 SEACVAYGDGLKQDDSN----SVLYCNRAACWYKLGLWEKSVEDCNHALKSQPSYIKALL 530
Query: 798 RRAALH-------EMIRDY----------TQAASDLQRLVSILENQSAE 829
RRAA + + ++DY ++ A L+R ++L N+S E
Sbjct: 531 RRAASYGKLGRWEDAVKDYEFLRRELPGDSEVAESLERAKTVLMNRSQE 579
|
Involved in osmotic and salt stress tolerance. May play a role in the control of meristematic cell size during osmotic stress. May function as an adaptator protein for BRL2 and may be required for signaling affecting leaf vascular tissue pattern formation. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9HGM9|DNJC7_SCHPO DnaJ homolog subfamily C member 7 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC543.02c PE=4 SV=1 | Back alignment and function description |
|---|
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 20/189 (10%)
Query: 710 SSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAAL 769
++ +L VR L + K+ GN+ F+ G Y +A E Y+ AL + +++ A + NRA L
Sbjct: 212 TAKTLFKQVRKLENTKNQGNDLFRQGNYQDAYEKYSEALQIDPDNKETVAKLYMNRATVL 271
Query: 770 QALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAE 829
L + +A++D A+A+D +Y K + RA HE + + +A D+Q + +
Sbjct: 272 LRLKRPEEALSDSDNALAIDSSYLKGLKVRAKAHEALEKWEEAVRDVQSAIEL------- 324
Query: 830 KAKQSRSPGRTISSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRK 889
S +LRQ R L + + KK + D Y ILGV T +IKKAYRK
Sbjct: 325 ----------DASDANLRQELRRL---QLELKKSKRKDHYKILGVSKEATDIEIKKAYRK 371
Query: 890 AALKHHPDK 898
AL +HPDK
Sbjct: 372 LALVYHPDK 380
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q9MAH1|TTL1_ARATH TPR repeat-containing thioredoxin TTL1 OS=Arabidopsis thaliana GN=TTL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 99/374 (26%), Positives = 163/374 (43%), Gaps = 45/374 (12%)
Query: 455 GNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCY-SNRAATRISLGRMREALE 513
GN+ Y+ EA Y + I + P Y SNRAA I L R+ EA++
Sbjct: 234 GNEMYRKGLFNEALKLYDRAI-----------ALSPTNAAYRSNRAAALIGLSRIGEAVK 282
Query: 514 DCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGL 573
+C A DPN+ + + R A + LG++ +A+ + +C R + L
Sbjct: 283 ECEDAVRSDPNYGRAHHRLALLLIRLGQVNSARKH----------LCFLGRPSDPME--L 330
Query: 574 QKAQKVTEY-INCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKY 632
QK + V ++ I C ++ ++ + +E +S + S +L K +A L +
Sbjct: 331 QKLEAVEKHLIKCVDA---RRVTDWKTVLIEADAAIVSGADFSPQLFMCKVEAFLKLHRL 387
Query: 633 EEA-IQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQ 691
++A +L E +P E V+ S R + YF ++E+AL +
Sbjct: 388 DDAQSKLLE--VPKVEPF---------PVSCSQTRFSGMACEAYIYFVKAQIEMALGRFE 436
Query: 692 KLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN 751
+ + E +M L TV + ++ GN+ +KS RYTEA Y L +
Sbjct: 437 NAVMAAEKASQIDPRCNEVAM-LHNTVTLVARARARGNDLYKSERYTEASSAYAEGLRLD 495
Query: 752 IESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQ 811
P AI +CNRAA LG +I DC+ A+ +YTK + RRAA + + +
Sbjct: 496 ----PCNAILYCNRAACWFKLGMWERSIEDCNQALRYQPSYTKPLLRRAASNSKMERWGA 551
Query: 812 AASDLQRLVSILEN 825
A SD + L+ L +
Sbjct: 552 AVSDYEALIRELPH 565
|
Involved in responses to osmotic stress and abscisic acid (ABA). May act as a positive regulator of ABA signaling during germination and seedling development under stress. Arabidopsis thaliana (taxid: 3702) |
| >sp|F4IXE4|TTL2_ARATH TPR repeat-containing thioredoxin TTL2 OS=Arabidopsis thaliana GN=TTL2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 90.1 bits (222), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 104/414 (25%), Positives = 183/414 (44%), Gaps = 52/414 (12%)
Query: 455 GNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALED 514
GN+ ++ EA Y + I P + T +SNRAA SLG++ EA+ +
Sbjct: 265 GNEMFRKGCFAEALKLYDRAIELSPSNATY----------HSNRAAALSSLGQIGEAVNE 314
Query: 515 CMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQ 574
C +A +DPNF + + R A L LG ++NA + + + LD + ++
Sbjct: 315 CEIAIKLDPNFARAHHRLASLLLRLGYVDNAGIHLYSVEEP-----LDPTV-------VK 362
Query: 575 KAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEM-KADALYMLRKYE 633
Q+V +++N K + S L ++ A++ + S L M KA+AL L + +
Sbjct: 363 MLQQVDKHLN---KCTYARRRGEWSIVLTEVSAAIASGADSSPQLAMCKAEALLKLLRLD 419
Query: 634 EAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSY--FCIGKLEVALDLLQ 691
+A ++ E +P E AS +S R + +I+++Y F ++E+AL +
Sbjct: 420 DAQRVLE-CVPKVEPFPAS---------FSHTRF--FDMIAEAYTSFVKSQMELALGRFE 467
Query: 692 KLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN 751
+ + + E + L VR + + GN+ ++ RYTEA Y L +
Sbjct: 468 NAVVTAEKASKIDPQNNEVEI-LYKNVRLITRARDRGNDLYELERYTEARSAYAEGLKYD 526
Query: 752 IESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQ 811
P A C RA +G +I DC+ A+ + +YTK +RAAL+ + + +
Sbjct: 527 ----PSNATLLCYRADCFFKVGMWESSIEDCNHALLILPSYTKPRLQRAALYTKLERWAE 582
Query: 812 AASDLQRLV-------SILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEE 858
A SD + L I E+ + +S G + + + +SS+EE
Sbjct: 583 AVSDYEILRKELPYDKEIAESLFHAQVALKKSRGEVVLNMEFGGEVEEISSLEE 636
|
Plays a role in the transmission of male gametophyte. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q28IV3|RPAP3_XENTR RNA polymerase II-associated protein 3 OS=Xenopus tropicalis GN=rpap3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 63/106 (59%), Gaps = 5/106 (4%)
Query: 717 TVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIA 776
T +ALL K GN FKSG+Y EA+E YT + + P+ A+ NRA+A L + A
Sbjct: 129 TEKALLE-KEKGNNYFKSGQYDEAIECYTRGMDAD----PYNAVLPTNRASAFFRLKKYA 183
Query: 777 DAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
A +DC+LA+AL+ NY KA +RR A ++D A D ++++ +
Sbjct: 184 VAESDCNLAIALNHNYAKAYARRGAARLALKDLQGAKEDYEKVLEL 229
|
May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein. Xenopus tropicalis (taxid: 8364) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 954 | ||||||
| 255583839 | 1489 | conserved hypothetical protein [Ricinus | 0.648 | 0.415 | 0.561 | 0.0 | |
| 296087054 | 1564 | unnamed protein product [Vitis vinifera] | 0.668 | 0.407 | 0.557 | 0.0 | |
| 224090067 | 1439 | predicted protein [Populus trichocarpa] | 0.651 | 0.432 | 0.572 | 0.0 | |
| 359496053 | 670 | PREDICTED: LOW QUALITY PROTEIN: dnaJ hom | 0.627 | 0.894 | 0.573 | 0.0 | |
| 224139780 | 1465 | predicted protein [Populus trichocarpa] | 0.646 | 0.421 | 0.547 | 0.0 | |
| 147778755 | 1599 | hypothetical protein VITISV_043011 [Viti | 0.589 | 0.351 | 0.579 | 0.0 | |
| 297824107 | 1099 | DNAJ heat shock N-terminal domain-contai | 0.755 | 0.656 | 0.438 | 1e-172 | |
| 30688675 | 1108 | DNAJ heat shock N-terminal domain-contai | 0.732 | 0.630 | 0.435 | 1e-171 | |
| 17065024 | 1108 | Unknown protein [Arabidopsis thaliana] | 0.732 | 0.630 | 0.435 | 1e-170 | |
| 449449926 | 1368 | PREDICTED: uncharacterized protein LOC10 | 0.617 | 0.430 | 0.529 | 1e-168 |
| >gi|255583839|ref|XP_002532671.1| conserved hypothetical protein [Ricinus communis] gi|223527604|gb|EEF29718.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/696 (56%), Positives = 485/696 (69%), Gaps = 77/696 (11%)
Query: 320 SGNAVASAEHADGMNTDSHESGKYCFAS---EVDGCKYFTFSSLSSADGGLTLRKCKLRK 376
SG V AE+A NT S ++ FAS ++DG K F FS+ S+ + K RK
Sbjct: 810 SGAGVVYAENAFAFNTGSSRQMQFGFASGLEDIDGRK-FAFSASSATPKSIYAAKHVHRK 868
Query: 377 KSKKKVGNNSFVISPSPNDKVSFSHQASSSLCKTVNGEEENKYEDKVQNKFEAAEEVKQR 436
KS++KV + F+++ + N K + E + + + K N E ++VKQ
Sbjct: 869 KSRRKVASEPFLVAANSNVK---------------DQEGDLRTQRKFGNDSEENDQVKQG 913
Query: 437 TVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYS 496
+ S T A QE CE WRLRGN AYKN +L +AED YT+GINSVP SE +GCC+KPLV+CYS
Sbjct: 914 SASSTVAIQEACETWRLRGNHAYKNGDLLKAEDSYTRGINSVPSSEISGCCLKPLVICYS 973
Query: 497 NRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSA 556
NRAATR+SLG MREAL+DC AA +DP FLKV MRAA CHL LGE+E A +Y+ L
Sbjct: 974 NRAATRMSLGNMREALKDCATAAVLDPRFLKVQMRAANCHLALGEVEKAYNYFSTCLEFG 1033
Query: 557 AAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSE 616
A VCLDRRIT+EAADGLQK QKV EYIN KLL+++TS+AA +AL+ I +ALSIS SE
Sbjct: 1034 AGVCLDRRITVEAADGLQKCQKVVEYINQCDKLLDRRTSDAARNALDIIADALSISPYSE 1093
Query: 617 KLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS------VLADNGSVT--YSLARLW 668
+LLEMKA+ ++ML++YEE IQLCE TL AEKNFAS ++ +GS +S ARLW
Sbjct: 1094 RLLEMKAEFMFMLQRYEEMIQLCEQTLHAAEKNFASSGIEDQLVVRDGSQNECHSFARLW 1153
Query: 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAG 728
RWRLISKSYF +G+LEVALD L+KLE++GS SD+ ++ILESS+SLA T+RAL+++KSAG
Sbjct: 1154 RWRLISKSYFYLGRLEVALDFLEKLERIGSTSDKNANKILESSVSLAVTIRALVNYKSAG 1213
Query: 729 NEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL 788
NEA +SGRYTEA+EHYT A+S+NIESRPFAAICFCNRAAA QAL QIADAIADCSLA+AL
Sbjct: 1214 NEAVRSGRYTEALEHYTAAISSNIESRPFAAICFCNRAAAHQALSQIADAIADCSLAIAL 1273
Query: 789 DENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISS-RDLR 847
D NY+KAV+RRA LHEMIRD+ QAASDLQRL+S+LEN S K +QS +P ++ISS ++LR
Sbjct: 1274 DGNYSKAVARRATLHEMIRDFGQAASDLQRLISVLENTSDGKGRQSATPSKSISSTKELR 1333
Query: 848 QACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPD---------- 897
QA R LS MEE+AKKG PLD YLILGVK SD+AADIKKAYRKAAL+HHPD
Sbjct: 1334 QAHRRLSLMEEEAKKGIPLDLYLILGVKQSDSAADIKKAYRKAALRHHPDKAGQFLARSE 1393
Query: 898 -------------------------------------KRSEYDQEQEIRKATKESPQNSH 920
KRSEYD ++EIRKA+KE N
Sbjct: 1394 SGEEGRLWKDIVQEVHMDADRLFKMIGEAYAVLSDPTKRSEYDLDEEIRKASKEYNGNHP 1453
Query: 921 YGR-SSDAYGYAC-RSSRRQSRQDNWKTYGNSYSRW 954
R SSD + Y+ R+ R++ QD W+TYG+S SRW
Sbjct: 1454 PRRPSSDYHSYSYGRNDHRRNWQDTWRTYGHSRSRW 1489
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087054|emb|CBI33381.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/721 (55%), Positives = 488/721 (67%), Gaps = 83/721 (11%)
Query: 308 QPSLKQGQKQRGSGNA-VASAEHADGM--NTDSHESG---KYCFASEVDGC--KYFTFSS 359
P Q G+G A VAS E G N + ES +YCFAS + K FTFS+
Sbjct: 853 HPETNQECSSSGAGVASVASVEAGAGFGSNMEKQESNNRVQYCFASGFEDMSEKKFTFSA 912
Query: 360 LSSADGGLTLRKCKLRKKSKKKVGNNSFVISPSPNDKV---SFSHQASSSLCKTVNGEEE 416
LSSA ++ ++ + RKK++ KVG+NSFVI+PSP+ + S SS +V E+
Sbjct: 913 LSSAHCSISAKR-QSRKKNRTKVGHNSFVITPSPDVNLGSSSVQFFPLSSTPSSVGIVED 971
Query: 417 NKYEDKV-QNKFEA-----AEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDF 470
K + QNK+E E+VKQR+ + +AA QE CE WRLRGN+AYKN +L++AEDF
Sbjct: 972 KKGNISISQNKWENRSEQDEEQVKQRSTTVSAALQEACEKWRLRGNKAYKNGDLSKAEDF 1031
Query: 471 YTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYM 530
YTQG++SVP SE +GCC+KPLVLCYSNRAATRISLG++R+A+ DCMMAA +DPNFLKV M
Sbjct: 1032 YTQGVDSVPPSEISGCCLKPLVLCYSNRAATRISLGKIRQAIADCMMAAVLDPNFLKVQM 1091
Query: 531 RAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLL 590
RA CHLVLGE+E+A Y+ K L S VCLDRR+ IEA+D L KAQKV E + S +LL
Sbjct: 1092 RAGNCHLVLGEVEDALQYFSKCLESGRIVCLDRRLMIEASDNLLKAQKVAECMKQSAELL 1151
Query: 591 EQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNF 650
+Q+T++AA +ALE+I E LSISS SEKLLEMKA+AL+MLRKYEE IQLCE TL AEKNF
Sbjct: 1152 KQRTTDAAVTALEKIAEGLSISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTLGFAEKNF 1211
Query: 651 ASVLAD------NG--SVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDR 702
A D NG S RLWR RLISKSYF +G+LEVALDLL+K E
Sbjct: 1212 ALAGNDEQLENTNGFKCKRRSFVRLWRSRLISKSYFHMGRLEVALDLLEKQE-------- 1263
Query: 703 YGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICF 762
Y SE +ESS+ LA T+R LL K AGNEAF+SGRYTEAVEHYT ALS N+ESRPFAAIC
Sbjct: 1264 YASETVESSIPLAATIRELLQIKRAGNEAFQSGRYTEAVEHYTSALSINVESRPFAAICL 1323
Query: 763 CNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
CNRAAA QALGQIADAIADCSLA+ALD +Y+KAVSRRA LHE IRDY QAA DLQRL+ +
Sbjct: 1324 CNRAAAHQALGQIADAIADCSLAIALDGSYSKAVSRRATLHERIRDYRQAARDLQRLIPV 1383
Query: 823 LENQSAEKAKQSRSPGRTI-SSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAA 881
LE QS EK K S +PGR+ ++++++QA R LSSMEE AK G PLD YLILG+K S+TAA
Sbjct: 1384 LEKQSHEKIKLSGTPGRSSGNAKEIKQAHRRLSSMEEKAKNGIPLDLYLILGIKPSETAA 1443
Query: 882 DIKKAYRKAALKHHPD-------------------------------------------- 897
DIKKAYRKAAL+HHPD
Sbjct: 1444 DIKKAYRKAALRHHPDKAGQFLARSEGGDDGQLWKEIAEEVHKDADRLFKMIGEAYAVLS 1503
Query: 898 ---KRSEYDQEQEIRKATKESPQNSHYGRSSDAYGYAC-RSSRRQSRQDNWKTYGNSYSR 953
KRSEYD E+EIR + +E+ + SSDA Y+ R++ + Q+ WKTYGNSYSR
Sbjct: 1504 DPTKRSEYDLEEEIRNSRRETSLSGTSRSSSDAQSYSFERNTNGRYWQETWKTYGNSYSR 1563
Query: 954 W 954
W
Sbjct: 1564 W 1564
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224090067|ref|XP_002308929.1| predicted protein [Populus trichocarpa] gi|222854905|gb|EEE92452.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/704 (57%), Positives = 484/704 (68%), Gaps = 82/704 (11%)
Query: 325 ASAEHADGMNTDSHESGKYCFAS---EVDGCKYFTFSSLSSADGGLTLRKCKLRKKSKKK 381
+AE G+ T+S ++ FAS ++DG K+F FS+ SS + K + RKK ++K
Sbjct: 742 GAAEDTHGLKTESSHQMQFSFASGSGDLDGRKFF-FSASSSEQISSSAPKRQFRKKYRRK 800
Query: 382 VGNNSFVISPSPN-DKVS-FSHQASSSLCK-------TVNGEEEN--KYEDKVQNKFEAA 430
+V++P+PN KV+ FS Q V G+EE+ + KV NK E
Sbjct: 801 NPCAPYVVAPNPNVSKVNYFSVQIPPQATTFSYIAFDIVQGQEEDLSTPQRKVGNKSEIN 860
Query: 431 EEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKP 490
E KQ ++S T + QE CEMWR RGN+AY+N ++++AEDFYT GINS+P SE +GCC+KP
Sbjct: 861 ELAKQGSISSTDSVQEACEMWRARGNRAYQNGDMSKAEDFYTTGINSIPSSEMSGCCLKP 920
Query: 491 LVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYH 550
LV+CYSNRAATR+SLG +REAL DC+ A+ +DPNFLKV MRAA CHL LGE+E+A HY+
Sbjct: 921 LVICYSNRAATRMSLGNIREALRDCIKASGLDPNFLKVQMRAANCHLQLGEVEDALHYFS 980
Query: 551 KLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALS 610
K L S A VCLDRR TIEAADGLQKAQKV E N S KLLE++T +AA +AL+ I EALS
Sbjct: 981 KCLESGAGVCLDRRTTIEAADGLQKAQKVAECTNRSAKLLEERTYDAAVNALDAIGEALS 1040
Query: 611 ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTY-------- 662
IS SE+LLEMKA+ L+ML+KY+E IQLCE TL AEK FASV AD V
Sbjct: 1041 ISPYSERLLEMKAEFLFMLQKYKEVIQLCEQTLCAAEKYFASVGADGQFVDIGCSESENC 1100
Query: 663 SLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRY--GSEILESSMSLAGTVRA 720
S AR+WRW LISKS F +GKLEVALDLL+KLEQ+ SIS +Y ++ILESS++LA TVR
Sbjct: 1101 SFARVWRWHLISKSNFYLGKLEVALDLLEKLEQMRSISYKYANANKILESSVTLAVTVRD 1160
Query: 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIA 780
LL HKSAGNEA +SGRY EAVEHYT ALS NIESRPF+AICF NRAAA QALGQIADAIA
Sbjct: 1161 LLRHKSAGNEAVRSGRYAEAVEHYTAALSNNIESRPFSAICFGNRAAAHQALGQIADAIA 1220
Query: 781 DCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRT 840
DCSLA+ALD NY+KAVSRRAALHEMIRDY QAA DLQRLVS+LEN S EK +QS P R+
Sbjct: 1221 DCSLAVALDGNYSKAVSRRAALHEMIRDYGQAAIDLQRLVSVLENLSDEKVRQSSKPARS 1280
Query: 841 IS-SRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPD-- 897
S +++LRQA +HLS MEE+AKKG PLD Y ILGVK SDTAADIKKAYRKAALKHHPD
Sbjct: 1281 TSRTKELRQARQHLSLMEEEAKKGIPLDLYRILGVKDSDTAADIKKAYRKAALKHHPDKA 1340
Query: 898 ---------------------------------------------KRSEYDQEQEIRKAT 912
KRSEYD ++EIRKA+
Sbjct: 1341 GQFLARSESGHDRQLWKEIVQEVHADADRLFKMIGEAYAVLSDSSKRSEYDLDEEIRKAS 1400
Query: 913 KESPQNSH---YGRSSDAYGYACRSSRRQSRQDNWKTYGNSYSR 953
KE+ +SH Y RS+ R+ R+ QDNWKT N YSR
Sbjct: 1401 KENNGSSHRRTYTRSNSNE----RNDYRRHWQDNWKT--NGYSR 1438
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359496053|ref|XP_003635140.1| PREDICTED: LOW QUALITY PROTEIN: dnaJ homolog subfamily C member 7 homolog [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/670 (57%), Positives = 470/670 (70%), Gaps = 71/670 (10%)
Query: 353 KYFTFSSLSSADGGLTLRKCKLRKKSKKKVGNNSFVISPSPNDKV---SFSHQASSSLCK 409
K FTFS+LSSA ++ ++ + RKK++ KVG+NSFVI+PSP+ + S SS
Sbjct: 4 KKFTFSALSSAHCSISAKR-QSRKKNRTKVGHNSFVITPSPDVNLGSSSVQFFPLSSTPS 62
Query: 410 TVNGEEENKYEDKV-QNKFEA-----AEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNN 463
+V E+ K + QNK+E E+VKQR+ + +AA QE CE WRLRGN+AYKN +
Sbjct: 63 SVGIVEDKKGNISISQNKWENRSEQDEEQVKQRSTTVSAALQEACEKWRLRGNKAYKNGD 122
Query: 464 LTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523
L++AEDFYTQG++SVP SE +GCC+KPLVLCYSNRAATRISLG++R+A+ DCMMAA +DP
Sbjct: 123 LSKAEDFYTQGVDSVPPSEISGCCLKPLVLCYSNRAATRISLGKIRQAIADCMMAAVLDP 182
Query: 524 NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYI 583
NFLKV MRA CHLVLGE+E+A Y+ K L S VCLDRR+ IEA+D L KAQKV E +
Sbjct: 183 NFLKVQMRAGNCHLVLGEVEDALQYFSKCLESGRIVCLDRRLMIEASDNLLKAQKVAECM 242
Query: 584 NCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTL 643
S +LL+Q+T++AA +ALE+I E LSISS SEKLLEMKA+AL+MLRKYEE IQLCE TL
Sbjct: 243 KQSAELLKQRTTDAAVTALEKIAEGLSISSYSEKLLEMKAEALFMLRKYEEVIQLCEQTL 302
Query: 644 PVAEKNFASVLADNGSVT----------YSLARLWRWRLISKSYFCIGKLEVALDLLQKL 693
AEKNFA LA N S RLWR RLISKSYF +G+LEVALDLL+K
Sbjct: 303 GFAEKNFA--LAGNDEQLENTNGFKCKRRSFVRLWRSRLISKSYFHMGRLEVALDLLEKQ 360
Query: 694 EQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIE 753
E++ RY SE +ESS+ LA T+R LL K++GNEAF+SGRYTEAVEHYT ALS N+E
Sbjct: 361 EELXFYWCRYASETVESSIPLAATIRELLQIKASGNEAFQSGRYTEAVEHYTSALSINVE 420
Query: 754 SRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAA 813
SRPFAAIC CNRAAA QALGQIADAIADCSLA+ALD +Y+KAVSRRA LHE IRDY QAA
Sbjct: 421 SRPFAAICLCNRAAAHQALGQIADAIADCSLAIALDGSYSKAVSRRATLHERIRDYRQAA 480
Query: 814 SDLQRLVSILENQSAEKAKQSRSPGRTI-SSRDLRQACRHLSSMEEDAKKGEPLDFYLIL 872
DLQRL+ +LE QS EK K S +PGR+ ++++++QA R LSSMEE AK G PLD YLIL
Sbjct: 481 RDLQRLIPVLEKQSHEKIKLSGTPGRSSGNAKEIKQAHRRLSSMEEKAKNGIPLDLYLIL 540
Query: 873 GVKASDTAADIKKAYRKAALKHHPD----------------------------------- 897
G+K S+TAADIKKAYRKAAL+HHPD
Sbjct: 541 GIKPSETAADIKKAYRKAALRHHPDKAGQFLARSEGGDDGQLWKEIAEEVHKDADRLFKM 600
Query: 898 ------------KRSEYDQEQEIRKATKESPQNSHYGRSSDAYGYAC-RSSRRQSRQDNW 944
KRSEYD E+EIR + +E+ + SSDA Y+ R++ + Q+ W
Sbjct: 601 IGEAYAVLSDPTKRSEYDLEEEIRNSRRETSLSGTSRSSSDAQSYSFERNTNGRYWQETW 660
Query: 945 KTYGNSYSRW 954
KTYGNSYSRW
Sbjct: 661 KTYGNSYSRW 670
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224139780|ref|XP_002323273.1| predicted protein [Populus trichocarpa] gi|222867903|gb|EEF05034.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/700 (54%), Positives = 469/700 (67%), Gaps = 83/700 (11%)
Query: 320 SGNAVASAEHADGMNTDSHESGKYCFASEVDGCKYFTFSSLSSADGGLTLRKCKLRKKSK 379
S + ASAE G+ T+S ++ FAS ++ FS +S+ R+ RKK +
Sbjct: 784 SNDGAASAEVTHGLKTESSHQMQFSFASGLEDVDERKFSFSASSCSSTPKRQ--YRKKYR 841
Query: 380 KKVGNNSFVISPSPNDKVSFSHQASSSLCKTVNGEEENKYEDKVQNKFEAAEEVKQRTVS 439
+K F+ P+PN + GE+ + + KV NK E E KQ ++S
Sbjct: 842 RKPPCEPFIFVPNPNGQ----------------GEDLSTRQKKVGNKSEINELAKQGSIS 885
Query: 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRA 499
T + QE CEMWR RGN AY+N ++++AEDFYT GINS+P S+ +GCC+KPLV+CYSNRA
Sbjct: 886 STRSVQEECEMWRARGNHAYQNGDMSKAEDFYTCGINSIPSSDISGCCLKPLVICYSNRA 945
Query: 500 ATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559
ATR+SLG MREA+ DC+ AA +DPNF KV +RAA CHL LGE+E+A HY++K L S V
Sbjct: 946 ATRMSLGNMREAIRDCIKAADLDPNFFKVQIRAANCHLQLGEVEDALHYFNKCLESRVGV 1005
Query: 560 CLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLL 619
CLDRRITIEAADG+QKAQKV E N S KLLE++T +AA +AL+ I EALSIS SE+LL
Sbjct: 1006 CLDRRITIEAADGVQKAQKVVECTNHSAKLLEERTYDAALNALDVIAEALSISPYSERLL 1065
Query: 620 EMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTY--------SLARLWRWR 671
EMKA L+MLRKY+E IQ+CE TL AEKNF S+ D V S AR+WRW
Sbjct: 1066 EMKAKFLFMLRKYKEVIQMCEQTLGAAEKNFVSIGVDGQFVDIGCSESENCSFARVWRWH 1125
Query: 672 LISKSYFCIGKLEVALDLLQKLEQVGSISDRY--GSEILESSMSLAGTVRALLHHKSAGN 729
LISKSYF +GKLEVALDLLQKLEQ+GSIS + S+ILESS++LA T+R LL HKSAGN
Sbjct: 1126 LISKSYFYLGKLEVALDLLQKLEQMGSISCKKADASKILESSVTLAVTIRDLLRHKSAGN 1185
Query: 730 EAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALD 789
EA +S RYTEAVEHYT AL +IESRPFAAICF NRAAA QALGQIADAI+DCSLA+ALD
Sbjct: 1186 EAVQSARYTEAVEHYTGALLNSIESRPFAAICFGNRAAAHQALGQIADAISDCSLAVALD 1245
Query: 790 ENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTIS-SRDLRQ 848
NY+KAV+RRAALHE IRDY QAASDL RL+SILENQS K +QS P R+ S ++ LRQ
Sbjct: 1246 GNYSKAVARRAALHERIRDYRQAASDLHRLISILENQSDGKVRQSSKPARSTSWTKALRQ 1305
Query: 849 ACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPD----------- 897
A + LS MEE+AKKG LD Y ILGVK S+TA+DIKKAY KAALKHHPD
Sbjct: 1306 ARQRLSLMEEEAKKGIHLDLYCILGVKDSETASDIKKAYHKAALKHHPDKAGQFLARSES 1365
Query: 898 ------------------------------------KRSEYDQEQEIRKATKESPQNSHY 921
KRSEYD +++IR+A+KES +S +
Sbjct: 1366 GDDGRLWKEIVQEVHADADRLFKMIGEAYAVLSDPTKRSEYDLDEQIRRASKESNGSSPH 1425
Query: 922 GRSSDAYGYAC-RSSRRQSRQDN------WKTYGNSYSRW 954
GR+S G + R+ R++ QDN WKTYG S SRW
Sbjct: 1426 GRTSYTRGNSNERNEYRRNWQDNWKTYGYWKTYGYSSSRW 1465
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147778755|emb|CAN73699.1| hypothetical protein VITISV_043011 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/621 (57%), Positives = 432/621 (69%), Gaps = 59/621 (9%)
Query: 308 QPSLKQGQKQRGSGNA-VASAEHADGM--NTDSHESG---KYCFASEVDGC--KYFTFSS 359
P Q G+G A VAS E G N + ES +YCFAS K FTFS+
Sbjct: 911 HPETNQECSSSGAGVAXVASVEAGAGFGSNMEKQESNNRVQYCFASGFXDMSEKKFTFSA 970
Query: 360 LSSADGGLTLRKCKLRKKSKKKVGNNSFVISPSPNDKV---SFSHQASSSLCKTVNGEEE 416
LSSA ++ ++ + RKK++ KVG NSFVI+PSP+ + S SS +V E+
Sbjct: 971 LSSAHCSISAKR-QSRKKNRTKVGXNSFVITPSPDVNLGSSSVQFFPLSSTPSSVGIVED 1029
Query: 417 NKYEDKV-QNKFEA-----AEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDF 470
K + QNK+E E+VKQR+ + +AA QE CE WRLRGN+AYKN +L++AEDF
Sbjct: 1030 KKGNISISQNKWENRSEQDEEQVKQRSTTVSAALQEACEKWRLRGNKAYKNGDLSKAEDF 1089
Query: 471 YTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYM 530
YTQG++SVP SE +GCC+KPLVLCYSNRAATRISLG++R+A+ DCMMAA +DPNFLKV M
Sbjct: 1090 YTQGVDSVPPSEISGCCLKPLVLCYSNRAATRISLGKIRQAIADCMMAAVLDPNFLKVQM 1149
Query: 531 RAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLL 590
RA CHLVLGE+E+A Y+ K L S VCLDRR+ IEA+D L KAQKV E + S +LL
Sbjct: 1150 RAGNCHLVLGEVEDALQYFSKCLESGRIVCLDRRLMIEASDNLLKAQKVAECMKRSAELL 1209
Query: 591 EQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNF 650
+Q+T++AA +ALE+I E LSISS SEKLLEMKA+AL MLRKYEE IQLCE TL AEKNF
Sbjct: 1210 KQRTTDAAVTALEKIAEGLSISSYSEKLLEMKAEALXMLRKYEEVIQLCEQTLGFAEKNF 1269
Query: 651 ASVLAD------NG--SVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDR 702
A D NG S RLWR LISKSYF +G+LEVALDLL+K E
Sbjct: 1270 ALAGNDEQLENTNGFKCKRRSFVRLWRSHLISKSYFHMGRLEVALDLLEKQE-------- 1321
Query: 703 YGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICF 762
AGNEAF+SGRYTEAVEHYT ALS N+ESRPFAAIC
Sbjct: 1322 ------------------------AGNEAFQSGRYTEAVEHYTSALSINVESRPFAAICL 1357
Query: 763 CNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
CNRAAA QALGQIADAIADCSLA+ALD +Y+KAVSRRA LHE IRDY QAA DLQRL+ +
Sbjct: 1358 CNRAAAHQALGQIADAIADCSLAIALDGSYSKAVSRRATLHERIRDYRQAARDLQRLIPV 1417
Query: 823 LENQSAEKAKQSRSPGRTI-SSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAA 881
LE QS EK K S +PGR+ ++++++QA R LSSMEE AK G PLD YLILG+K S+TAA
Sbjct: 1418 LEKQSHEKXKLSGTPGRSSGNAKEIKQAHRRLSSMEEKAKNGIPLDLYLILGIKPSETAA 1477
Query: 882 DIKKAYRKAALKHHPDKRSEY 902
DIKKAYRKAAL+HHPDK ++
Sbjct: 1478 DIKKAYRKAALRHHPDKAGQF 1498
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297824107|ref|XP_002879936.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297325775|gb|EFH56195.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 366/834 (43%), Positives = 491/834 (58%), Gaps = 113/834 (13%)
Query: 204 KVNSETQNNVATGRA-SLSSDSFESQQNDNVSEMPSMVGAQKDESSPTNTQHELGMSFTE 262
KV+ + + +T R S SS+ F Q N+ E P+ ++ TNT SF +
Sbjct: 295 KVDPKCKEGASTSRPYSFSSNGFH-QSNNAADEKPTFHSKTTYVNNLTNTSFGTKTSFDD 353
Query: 263 FVIPNWDPSCFKASLYTEPNKKLEFSVKSKSIKDKRSKKTGGKSKQPSLKQGQKQRGSG- 321
F +P WDPS K SL+ E N+ + ++S KDKRSKK K KQ + Q G
Sbjct: 354 FKVPEWDPSLLKRSLFPEVNRNPVLARSNRSSKDKRSKKVMEKIKQRKQDRCNDQTAEGI 413
Query: 322 ---NAVASAEHADGMN-------------------TDSHE-----SGKYCFASEVDG--- 351
+ S + M+ T SH + F +E G
Sbjct: 414 EAQEKLNSPGYCSPMDYSPYQGETASNQLPTETPLTPSHSREPSARDSFLFTAEDHGSSC 473
Query: 352 CKYFTFSSLSSADGGLTLRKCKLRKKSKKKVGNNSFVISPSPNDKVSFSHQASSSLCKTV 411
F+FS+ S++ G + +K + KK ++KV NNS P N L T+
Sbjct: 474 MPNFSFSA-STSQGTIPHKKLQAVKKYRRKV-NNSV---PKNN------------LNTTM 516
Query: 412 NGEEENKYEDKVQNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFY 471
EEN+ + Q+K ++ T+ + CE+WRLRGNQAYKN N+ +AE+ Y
Sbjct: 517 RNNEENQRVNTGQSKQDSGS---------TSMMPDVCEVWRLRGNQAYKNGNMCKAEECY 567
Query: 472 TQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMR 531
T GI+S P ++ + +KPL LCY NRAA RISLGR+REA+ DC MAA++DP+++K Y R
Sbjct: 568 THGISSSPSNDNSEYSVKPLALCYGNRAAARISLGRLREAISDCEMAASLDPSYIKAYTR 627
Query: 532 AAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLE 591
AA CHLVLGE+ A Y++K L S ++VCLDRR TIEAA+GLQ+AQ+V ++ +C+ LE
Sbjct: 628 AANCHLVLGELGAAVQYFNKCLESTSSVCLDRRTTIEAAEGLQRAQRVADFTSCASNFLE 687
Query: 592 QKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFA 651
++T + AS AL I AL+ISSCS+KLL+MKA+AL+M+R+Y+E I+LCE+TL AE+NF
Sbjct: 688 KRTPDGASDALVPIANALTISSCSDKLLQMKAEALFMIRRYKEVIELCENTLQTAERNFV 747
Query: 652 S------VLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGS 705
S D TY +WRW +ISKS+F +G LE ALD+ +KL+QVG +
Sbjct: 748 SAGLSGTTNVDGLGSTYHSLIVWRWNMISKSHFYLGNLEKALDISEKLQQVGYTCNENHE 807
Query: 706 EILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNR 765
E ES SL T+ LL +K+ GNEA + +Y EAVE YT ALS N++SRPFAAICFCNR
Sbjct: 808 ECRESPASLVATISELLRYKNTGNEAVRDRKYMEAVEQYTAALSRNVDSRPFAAICFCNR 867
Query: 766 AAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825
AAA QAL QIADAIADCSLAMALDENYTKAVSRRA LHEMIRDY QAASDLQRL+SIL
Sbjct: 868 AAANQALVQIADAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDLQRLISILVK 927
Query: 826 QSAEKAKQSRSPGRTISSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKK 885
QS + S R S ++L+QA + LS MEE +K+G PLDF+LI+GVK SD+AADIKK
Sbjct: 928 QSDKTKTPEISVDRASSRKELKQARQRLSVMEEKSKEGNPLDFFLIMGVKTSDSAADIKK 987
Query: 886 AYRKAALKHHPD---------------------------------------------KRS 900
AYRKAAL+HHPD KRS
Sbjct: 988 AYRKAALRHHPDKAAQILVRSESEGPWLKEILEEVHKGADRLFKMIGEAYSVLSDPIKRS 1047
Query: 901 EYDQEQEIRKATKESPQNSHYGRSSDAYGYACRSSRRQSRQDNWKTYGNSYSRW 954
+Y+ ++EIRKA + + S+ ++++A ++SRR + D+ +T N+ S W
Sbjct: 1048 DYELDEEIRKA--RASRESYRRKAAEASSPPYQTSRRHWK-DSGRTNRNTPSWW 1098
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30688675|ref|NP_850351.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] gi|330254899|gb|AEC09993.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 365/838 (43%), Positives = 490/838 (58%), Gaps = 139/838 (16%)
Query: 219 SLSSDSFESQQNDNVSEMPSMVGAQKDESSPTNTQHELGMSFTEFVIPNWDPSCFKASLY 278
S SS+ F+ Q N+ E P+ ++ TNT F +F +P WDPS K SL+
Sbjct: 308 SFSSNGFQ-QSNNASGENPTFHSQTTYGNNLTNTSFATKTFFDDFKVPEWDPSLLKDSLF 366
Query: 279 TEPNKKLEFSVKSKSIKDKRSKKTGGKSKQPSLKQGQKQRGSGNAVASAEHADGMNT--- 335
E ++ + ++S KDKRSKK K +KQG+ R +G E + +N+
Sbjct: 367 PEVDRNPVHARSNRSSKDKRSKKVKEK-----MKQGEPDRCNGQTAEGIEAQEKLNSPGY 421
Query: 336 ---------------------------------DSHESGKYCFASEVDGCKY-------- 354
DS S + AS D +
Sbjct: 422 CSPMDYSPYQGDKTSNQFPTETPLAPSHSREHIDSRSSNDFKVASARDSSLFTAEDHGST 481
Query: 355 ----FTFSSLSSADGGLTLRKCKLR--KKSKKKVGNNSFVISPSPNDKVSFSHQASSSLC 408
F+FS+ +S + T+R KL+ KK ++KV NNS S+L
Sbjct: 482 CIPNFSFSASTSQE---TIRHKKLQAVKKYRRKV-NNSL---------------PKSNLN 522
Query: 409 KTVNGEEENKYEDKVQNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAE 468
T+ +EN+ + Q K ++ T+ + CE+WRLRGNQAYKN +++AE
Sbjct: 523 ATMRNNQENQPVNTGQAKQDSGS---------TSMMPDVCEVWRLRGNQAYKNGYMSKAE 573
Query: 469 DFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKV 528
+ YT GINS P + + +KPL LCY NRAA RISLGR+REA+ DC MAA++DP+++K
Sbjct: 574 ECYTHGINSSPSKDNSEYSVKPLALCYGNRAAARISLGRLREAISDCEMAASLDPSYIKA 633
Query: 529 YMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGK 588
YMRAA CHLVLGE+ +A Y++K + S ++VCLDRR TIEAA+GLQ+AQ+V ++ +C+
Sbjct: 634 YMRAANCHLVLGELGSAVQYFNKCMKSTSSVCLDRRTTIEAAEGLQQAQRVADFTSCASI 693
Query: 589 LLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEK 648
LE++T + AS AL I ALSISSCS+KLL+MKA+AL+M+R+Y+E I+LCE+TL AE+
Sbjct: 694 FLEKRTPDGASDALVPIANALSISSCSDKLLQMKAEALFMIRRYKEVIELCENTLQTAER 753
Query: 649 NFASV-------LADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISD 701
NF S + GS +SL +WRW ISKS+F +G LE ALD+L+KL+QV +
Sbjct: 754 NFVSAGIGGTTNVNGLGSTYHSLI-VWRWNKISKSHFYLGNLEKALDILEKLQQVEYTCN 812
Query: 702 RYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAIC 761
E ES SL T+ LL +K+AGNEA + +Y EAVE YT ALS N++SRPFAAIC
Sbjct: 813 ENQEECRESPASLVATISELLRYKNAGNEAVRDRKYMEAVEQYTAALSRNVDSRPFAAIC 872
Query: 762 FCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVS 821
FCNRAAA QAL QIADAIADCSLAMALDENYTKAVSRRA LHEMIRDY QAASDLQRL+S
Sbjct: 873 FCNRAAANQALVQIADAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDLQRLIS 932
Query: 822 ILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAA 881
IL QS + S R S ++L+QA + LS MEE +K+G LDF+LI+GVK SD+AA
Sbjct: 933 ILVKQSDKTKTPETSVDRASSRKELKQARQRLSVMEEKSKEGIHLDFFLIMGVKTSDSAA 992
Query: 882 DIKKAYRKAALKHHPD-------------------------------------------- 897
DIKKAYRKAAL+HHPD
Sbjct: 993 DIKKAYRKAALRHHPDKAAQILVRSESEGPWLKEILEEVHKGADRLFKMIGEAYSVLSDP 1052
Query: 898 -KRSEYDQEQEIRKATKESPQNSHYGRSSDAYGYACRSSRRQSRQDNWKTYGNSYSRW 954
KRS+Y+ E+EIRKA + S ++ ++++A ++SRR + D+W+T N+ S W
Sbjct: 1053 TKRSDYELEEEIRKA-RASRESYRSRKAAEASSPPYQTSRRYWK-DSWRTNQNTPSWW 1108
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|17065024|gb|AAL32666.1| Unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 606 bits (1563), Expect = e-170, Method: Compositional matrix adjust.
Identities = 365/838 (43%), Positives = 489/838 (58%), Gaps = 139/838 (16%)
Query: 219 SLSSDSFESQQNDNVSEMPSMVGAQKDESSPTNTQHELGMSFTEFVIPNWDPSCFKASLY 278
S SS+ F+ Q N+ E P+ ++ TNT F +F +P WDPS K SL+
Sbjct: 308 SFSSNGFQ-QSNNASGENPTFHSQTTYGNNLTNTSFATKTFFDDFKVPEWDPSLLKDSLF 366
Query: 279 TEPNKKLEFSVKSKSIKDKRSKKTGGKSKQPSLKQGQKQRGSGNAVASAEHADGMNT--- 335
E ++ + ++S KDKRSKK K +KQG+ R +G E + +N+
Sbjct: 367 PEVDRNPVHARSNRSSKDKRSKKVKEK-----MKQGEPDRCNGQTAEGIEAQEKLNSPGY 421
Query: 336 ---------------------------------DSHESGKYCFASEVDGCKY-------- 354
DS S + AS D +
Sbjct: 422 CSPMDYSPYQGDKTSNQFPTETPLAPSHSREHIDSRSSNDFKVASARDSSLFTAEDHGST 481
Query: 355 ----FTFSSLSSADGGLTLRKCKLR--KKSKKKVGNNSFVISPSPNDKVSFSHQASSSLC 408
F+FS+ +S + T+R KL+ KK ++KV NNS S+L
Sbjct: 482 CIPNFSFSASTSQE---TIRHKKLQAVKKYRRKV-NNSL---------------PKSNLN 522
Query: 409 KTVNGEEENKYEDKVQNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAE 468
T+ +EN+ + Q K ++ T+ + CE+WRLRGNQAYKN +++AE
Sbjct: 523 ATMRNNQENQPVNTGQAKQDSGS---------TSMMPDVCEVWRLRGNQAYKNGYMSKAE 573
Query: 469 DFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKV 528
+ YT GINS P + + +KPL LCY NRAA RISLGR+REA+ DC MAA++DP+++K
Sbjct: 574 ECYTHGINSSPSKDNSEYSVKPLALCYGNRAAARISLGRLREAISDCEMAASLDPSYIKA 633
Query: 529 YMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGK 588
YMRAA CHLVLGE+ +A Y++K + S ++VCLDRR TIEAA+GLQ+AQ+V ++ +C+
Sbjct: 634 YMRAANCHLVLGELGSAVQYFNKCMKSTSSVCLDRRTTIEAAEGLQQAQRVADFTSCASI 693
Query: 589 LLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEK 648
LE++T + AS AL I ALSISSCS+KLL+MKA+AL+M+R+Y+E I+LCE+TL AE+
Sbjct: 694 FLEKRTPDGASDALVPIANALSISSCSDKLLQMKAEALFMIRRYKEVIELCENTLQTAER 753
Query: 649 NFASV-------LADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISD 701
NF S + GS +SL +WRW ISKS+F +G LE ALD+L+KL+QV +
Sbjct: 754 NFVSAGIGGTTNVNGLGSTYHSLI-VWRWNKISKSHFYLGNLEKALDILEKLQQVEYTCN 812
Query: 702 RYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAIC 761
E ES SL T+ LL +K+AGNEA +Y EAVE YT ALS N++SRPFAAIC
Sbjct: 813 ENQEECRESPASLVATISELLRYKNAGNEAVWDRKYMEAVEQYTAALSRNVDSRPFAAIC 872
Query: 762 FCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVS 821
FCNRAAA QAL QIADAIADCSLAMALDENYTKAVSRRA LHEMIRDY QAASDLQRL+S
Sbjct: 873 FCNRAAANQALVQIADAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQAASDLQRLIS 932
Query: 822 ILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAA 881
IL QS + S R S ++L+QA + LS MEE +K+G LDF+LI+GVK SD+AA
Sbjct: 933 ILVKQSDKTKTPETSVDRASSRKELKQARQRLSVMEEKSKEGIHLDFFLIMGVKTSDSAA 992
Query: 882 DIKKAYRKAALKHHPD-------------------------------------------- 897
DIKKAYRKAAL+HHPD
Sbjct: 993 DIKKAYRKAALRHHPDKAAQILVRSESEGPWLKEILEEVHKGADRLFKMIGEAYSVLSDP 1052
Query: 898 -KRSEYDQEQEIRKATKESPQNSHYGRSSDAYGYACRSSRRQSRQDNWKTYGNSYSRW 954
KRS+Y+ E+EIRKA + S ++ ++++A ++SRR + D+W+T N+ S W
Sbjct: 1053 TKRSDYELEEEIRKA-RASRESYRSRKAAEASSPPYQTSRRYWK-DSWRTNQNTPSWW 1108
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449926|ref|XP_004142715.1| PREDICTED: uncharacterized protein LOC101223119 [Cucumis sativus] gi|449506680|ref|XP_004162817.1| PREDICTED: uncharacterized LOC101223119 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 346/654 (52%), Positives = 435/654 (66%), Gaps = 65/654 (9%)
Query: 353 KYFTFSSLSSADGGLTLRKCKLRKKSKKKVGNNSFVISPSPNDKVSFSHQASSSLCKTVN 412
K FTFS+ SS ++ K + RKK+KKK +N+FVISPSP+ K S + SS
Sbjct: 728 KSFTFSASSSIQASVSGTKSRQRKKNKKKSNHNTFVISPSPDIKFGPSFEFSSI------ 781
Query: 413 GEEENKYEDKVQNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYT 472
+ + +K +A ++KQ TA QETCE WRLRGNQAYKN L +AED YT
Sbjct: 782 --ASSSSHSEASSKLQAEGKLKQGHPFSTA-IQETCEKWRLRGNQAYKNGELLKAEDLYT 838
Query: 473 QGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRA 532
QGI+SVP +E C+ L+LCYSNRAATR+SLG++R+ALEDC +A +DPNFLKV +RA
Sbjct: 839 QGIDSVPRNEELASCLNSLMLCYSNRAATRMSLGKIRKALEDCGVATELDPNFLKVQVRA 898
Query: 533 AKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQ 592
A CHL+LGE E+A Y+ K L S +CLDRR+ IEAADGLQKAQKV EY CS + LEQ
Sbjct: 899 ANCHLLLGETESALQYFSKCLESRDGICLDRRMIIEAADGLQKAQKVAEYTRCSSEFLEQ 958
Query: 593 KTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652
KT AA SAL+ I EA+SIS SEKLLE KA+AL++L++YEEAI LCE +L +AEKN
Sbjct: 959 KTDNAALSALDLIAEAISISVYSEKLLETKAEALFLLQRYEEAITLCEQSLCLAEKNCIP 1018
Query: 653 VLAD-----NGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEI 707
A +G + +ARLWRW LI+KS F +GK E AL+ + K++Q ++ +
Sbjct: 1019 ESAISKTDFSGYQSQLVARLWRWCLITKSLFYLGKFEAALETVGKIKQEKFNQEKSRIKS 1078
Query: 708 LESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAA 767
LE S +LA T++ LL KSAGNEAF+SG+Y EA+EHYT ALS N+ESR F A+C CNRAA
Sbjct: 1079 LELSFALADTIQGLLRCKSAGNEAFRSGKYAEAIEHYTDALSINVESRSFTAVCLCNRAA 1138
Query: 768 ALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827
A Q LGQIADAIADC+LA+AL ENY+KA SRRA L+EMIRDY QAASDL++ + I+ENQS
Sbjct: 1139 AYQGLGQIADAIADCNLAIALAENYSKAFSRRANLYEMIRDYGQAASDLKKYMFIVENQS 1198
Query: 828 AEKAKQSRSPGRTISSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAY 887
+K SRS G S +L++A R+ MEE AKK LDFYLILGVKA+D+A+DIKKAY
Sbjct: 1199 DDKVTLSRSAG----SVELKKARRNKPLMEEAAKKEISLDFYLILGVKATDSASDIKKAY 1254
Query: 888 RKAALKHHPD----------------------------------------------KRSE 901
RKAALKHHPD KRS
Sbjct: 1255 RKAALKHHPDKAGQFLRGDSSHDGRLWREISQDVYRDSDRLFKLIGEAYAVLSDSSKRSH 1314
Query: 902 YDQEQEIRKATKESPQNSHYGRSSDAYGYAC-RSSRRQSRQDNWKTYGNSYSRW 954
YD E+E+RK KES + S+ RSS+ YG RS+ Q+ +DNWK++GNS+SRW
Sbjct: 1315 YDLEEEMRKVPKESNRGSNNRRSSNVYGSPFERSANGQNCRDNWKSWGNSHSRW 1368
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 954 | ||||||
| TAIR|locus:2062724 | 1108 | TPR15 "tetratricopeptide repea | 0.522 | 0.449 | 0.568 | 4.9e-169 | |
| TAIR|locus:505006611 | 1165 | TPR16 "AT5G12430" [Arabidopsis | 0.599 | 0.490 | 0.479 | 1.4e-135 | |
| UNIPROTKB|F1NPY6 | 486 | DNAJC7 "Uncharacterized protei | 0.222 | 0.436 | 0.286 | 5.9e-25 | |
| UNIPROTKB|F1NPY5 | 469 | DNAJC7 "Uncharacterized protei | 0.202 | 0.411 | 0.285 | 8.5e-25 | |
| UNIPROTKB|F1S0P4 | 494 | DNAJC7 "Uncharacterized protei | 0.202 | 0.390 | 0.280 | 6.6e-24 | |
| UNIPROTKB|Q99615 | 494 | DNAJC7 "DnaJ homolog subfamily | 0.202 | 0.390 | 0.280 | 6.6e-24 | |
| MGI|MGI:1928373 | 494 | Dnajc7 "DnaJ (Hsp40) homolog, | 0.202 | 0.390 | 0.280 | 1.9e-23 | |
| UNIPROTKB|E2QWR5 | 494 | DNAJC7 "Uncharacterized protei | 0.202 | 0.390 | 0.275 | 3e-23 | |
| UNIPROTKB|G3V8B8 | 494 | Dnajc7 "Protein Dnajc7" [Rattu | 0.202 | 0.390 | 0.280 | 3e-23 | |
| RGD|1303226 | 494 | Dnajc7 "DnaJ (Hsp40) homolog, | 0.202 | 0.390 | 0.280 | 6.4e-23 |
| TAIR|locus:2062724 TPR15 "tetratricopeptide repeat 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1416 (503.5 bits), Expect = 4.9e-169, Sum P(4) = 4.9e-169
Identities = 290/510 (56%), Positives = 372/510 (72%)
Query: 399 FSHQASSSLCKT-VNGEEENKYEDKVQNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQ 457
+ + ++SL K+ +N N E++ N +A KQ + S T+ + CE+WRLRGNQ
Sbjct: 508 YRRKVNNSLPKSNLNATMRNNQENQPVNTGQA----KQDSGS-TSMMPDVCEVWRLRGNQ 562
Query: 458 AYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMM 517
AYKN +++AE+ YT GINS P + + +KPL LCY NRAA RISLGR+REA+ DC M
Sbjct: 563 AYKNGYMSKAEECYTHGINSSPSKDNSEYSVKPLALCYGNRAAARISLGRLREAISDCEM 622
Query: 518 AATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQ 577
AA++DP+++K YMRAA CHLVLGE+ +A Y++K + S ++VCLDRR TIEAA+GLQ+AQ
Sbjct: 623 AASLDPSYIKAYMRAANCHLVLGELGSAVQYFNKCMKSTSSVCLDRRTTIEAAEGLQQAQ 682
Query: 578 KVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQ 637
+V ++ +C+ LE++T + AS AL I ALSISSCS+KLL+MKA+AL+M+R+Y+E I+
Sbjct: 683 RVADFTSCASIFLEKRTPDGASDALVPIANALSISSCSDKLLQMKAEALFMIRRYKEVIE 742
Query: 638 LCEHTLPVAEKNFASVLAD-----NG-SVTYSLARLWRWRLISKSYFCIGKLEVALDLLQ 691
LCE+TL AE+NF S NG TY +WRW ISKS+F +G LE ALD+L+
Sbjct: 743 LCENTLQTAERNFVSAGIGGTTNVNGLGSTYHSLIVWRWNKISKSHFYLGNLEKALDILE 802
Query: 692 KLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN 751
KL+QV + E ES SL T+ LL +K+AGNEA + +Y EAVE YT ALS N
Sbjct: 803 KLQQVEYTCNENQEECRESPASLVATISELLRYKNAGNEAVRDRKYMEAVEQYTAALSRN 862
Query: 752 IESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQ 811
++SRPFAAICFCNRAAA QAL QIADAIADCSLAMALDENYTKAVSRRA LHEMIRDY Q
Sbjct: 863 VDSRPFAAICFCNRAAANQALVQIADAIADCSLAMALDENYTKAVSRRATLHEMIRDYDQ 922
Query: 812 AASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEEDAKKGEPLDFYLI 871
AASDLQRL+SIL QS + S R S ++L+QA + LS MEE +K+G LDF+LI
Sbjct: 923 AASDLQRLISILVKQSDKTKTPETSVDRASSRKELKQARQRLSVMEEKSKEGIHLDFFLI 982
Query: 872 LGVKASDTAADIKKAYRKAALKHHPDKRSE 901
+GVK SD+AADIKKAYRKAAL+HHPDK ++
Sbjct: 983 MGVKTSDSAADIKKAYRKAALRHHPDKAAQ 1012
|
|
| TAIR|locus:505006611 TPR16 "AT5G12430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1296 (461.3 bits), Expect = 1.4e-135, Sum P(2) = 1.4e-135
Identities = 283/590 (47%), Positives = 388/590 (65%)
Query: 323 AVAS-AEHADGMNTDSHESGKYCFASEVDGCKYFTFS--SLSSADGGLTXXXXXXXXXXX 379
A AS +E +D E+ + ++ FTFS S S G L+
Sbjct: 476 ATASESEVTSRYKSDRKENDDHSLSNTDAASSSFTFSASSFSGVQGPLSTSKRINRKKNP 535
Query: 380 XXVGNNSFVISPSPNDKVSFS-H------QASSSLCKTVNGEEENKYEDKVQNKFEAAEE 432
+G + +++ P+ + S H Q+ S K + + + N
Sbjct: 536 IKLGQDPYILIPNATLPLKSSQHSPLTGVQSHFSTGKPSERDPLTRLHKPINNSVMEKAR 595
Query: 433 VKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLV 492
+ ++ VS A QE CE WRLRGN AYK +L+ AE+ YTQGI+SVP ET+ C++ L+
Sbjct: 596 I-EKDVSNAA--QEACEKWRLRGNNAYKIGDLSRAEESYTQGIDSVPRIETSRNCLRALM 652
Query: 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKL 552
LCYSNRAATR++LGRMREA+ DC MA+++D NFLKV +RAA C+L LGEIE+A Y+ K
Sbjct: 653 LCYSNRAATRMALGRMREAIADCTMASSIDSNFLKVQVRAANCYLSLGEIEDASRYFKKC 712
Query: 553 LNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSIS 612
L S + +C+DR+I +EA++GLQKAQ+V+E ++ +G+ L+ +T A ALE + ++L IS
Sbjct: 713 LQSGSDICVDRKIIVEASEGLQKAQRVSECMHEAGRRLQLRTLTDAEKALEILEDSLLIS 772
Query: 613 SCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGS-VTYSLARLWRWR 671
+ SEKLL MK +AL ML KY+ AI+LCE T+ +A KN D + + R+W+
Sbjct: 773 TYSEKLLTMKGEALLMLEKYDAAIKLCEQTVDLAGKNSPPDSHDTPKDINF---RIWQCH 829
Query: 672 LISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEA 731
L+ KS F +GKLE A+ L+K EQ+ S + R G++ LESS+ LA T+R LL K+AGNEA
Sbjct: 830 LMLKSSFYMGKLEEAIASLEKQEQLLSATKREGNKTLESSIPLAATIRELLRLKAAGNEA 889
Query: 732 FKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDEN 791
F+SGR+TEAVEHYT AL+ N+ESRPF A+CFCNRAAA +ALGQ +DAIADCSLA+ALD+N
Sbjct: 890 FQSGRHTEAVEHYTAALACNVESRPFTAVCFCNRAAAYKALGQFSDAIADCSLAIALDQN 949
Query: 792 YTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACR 851
Y+KA+SRRA L EMIRDY QAASD++R V+IL Q EK + ++S+ D+RQA
Sbjct: 950 YSKAISRRATLFEMIRDYGQAASDMERYVNILTKQMEEKTSGTLDRSTSMSN-DIRQARI 1008
Query: 852 HLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE 901
LS +EE ++K LD YL+LGV S +A+DI+KAYRKAALKHHPDK +
Sbjct: 1009 RLSELEEKSRKENSLDMYLVLGVVPSCSASDIRKAYRKAALKHHPDKAGQ 1058
|
|
| UNIPROTKB|F1NPY6 DNAJC7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 197 (74.4 bits), Expect = 5.9e-25, Sum P(2) = 5.9e-25
Identities = 67/234 (28%), Positives = 106/234 (45%)
Query: 429 AAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCI 488
AA E S A +E E ++ +GN Y + EA ++YT+ I++ P + +
Sbjct: 2 AAPEGPGEPESEEEARREA-ESFKEQGNAYYAKKDYNEAYNYYTKAIDTCPNNASY---- 56
Query: 489 KPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHY 548
Y NRAAT + LGR REAL D + +D +F++ ++R KCHL LG A
Sbjct: 57 ------YGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAASRC 110
Query: 549 YHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEA 608
+ ++L LD + T +A L+ A V EY + E++ ++R A
Sbjct: 111 FQRVLE------LDHKNT-QAQQELKNASTVLEYEKIAEVDFEKRDFRKVVFCMDR---A 160
Query: 609 LSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTY 662
L + + +KA+ L +L +Y EA + L + N A L G Y
Sbjct: 161 LEFAPACHRFKILKAECLALLGRYPEAQSVASDILRMDSTN-ADALYVRGLCLY 213
|
|
| UNIPROTKB|F1NPY5 DNAJC7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 195 (73.7 bits), Expect = 8.5e-25, Sum P(2) = 8.5e-25
Identities = 61/214 (28%), Positives = 99/214 (46%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
E ++ +GN Y + EA ++YT+ I++ P + + Y NRAAT + LGR
Sbjct: 4 ESFKEQGNAYYAKKDYNEAYNYYTKAIDTCPNNASY----------YGNRAATLMMLGRF 53
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE 568
REAL D + +D +F++ ++R KCHL LG A + ++L LD + T +
Sbjct: 54 REALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAASRCFQRVLE------LDHKNT-Q 106
Query: 569 AADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYM 628
A L+ A V EY + E++ ++R AL + + +KA+ L +
Sbjct: 107 AQQELKNASTVLEYEKIAEVDFEKRDFRKVVFCMDR---ALEFAPACHRFKILKAECLAL 163
Query: 629 LRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTY 662
L +Y EA + L + N A L G Y
Sbjct: 164 LGRYPEAQSVASDILRMDSTN-ADALYVRGLCLY 196
|
|
| UNIPROTKB|F1S0P4 DNAJC7 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 186 (70.5 bits), Expect = 6.6e-24, Sum P(2) = 6.6e-24
Identities = 60/214 (28%), Positives = 95/214 (44%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
E ++ +GN Y + EA ++YT+ I+ P + + Y NRAAT + LGR
Sbjct: 29 ESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASY----------YGNRAATLMMLGRF 78
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE 568
REAL D + +D +F++ ++R KCHL LG A + + L LD + +
Sbjct: 79 REALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALE------LDHK-NAQ 131
Query: 569 AADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYM 628
A + A V EY + E++ ++R AL + + +KA+ L M
Sbjct: 132 AQQEFKNANAVIEYEKIAETDFEKRDFRKVVFCMDR---ALEFAPACHRFKILKAECLAM 188
Query: 629 LRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTY 662
L +Y EA + L + N A L G Y
Sbjct: 189 LGRYPEAQSVASDILRMDSTN-ADALYVRGLCLY 221
|
|
| UNIPROTKB|Q99615 DNAJC7 "DnaJ homolog subfamily C member 7" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 186 (70.5 bits), Expect = 6.6e-24, Sum P(2) = 6.6e-24
Identities = 60/214 (28%), Positives = 95/214 (44%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
E ++ +GN Y + EA ++YT+ I+ P + + Y NRAAT + LGR
Sbjct: 29 ETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASY----------YGNRAATLMMLGRF 78
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE 568
REAL D + +D +F++ ++R KCHL LG A + + L LD + +
Sbjct: 79 REALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALE------LDHK-NAQ 131
Query: 569 AADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYM 628
A + A V EY + E++ ++R AL + + +KA+ L M
Sbjct: 132 AQQEFKNANAVMEYEKIAETDFEKRDFRKVVFCMDR---ALEFAPACHRFKILKAECLAM 188
Query: 629 LRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTY 662
L +Y EA + L + N A L G Y
Sbjct: 189 LGRYPEAQSVASDILRMDSTN-ADALYVRGLCLY 221
|
|
| MGI|MGI:1928373 Dnajc7 "DnaJ (Hsp40) homolog, subfamily C, member 7" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 181 (68.8 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 60/214 (28%), Positives = 95/214 (44%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
E ++ +GN Y + EA ++YT+ I+ P + + Y NRAAT + LGR
Sbjct: 29 ESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPNNASY----------YGNRAATLMMLGRF 78
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE 568
REAL D + +D +F++ ++R KCHL LG A + + L LD + +
Sbjct: 79 REALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALE------LDHK-NAQ 131
Query: 569 AADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYM 628
A + A V EY + E++ ++R AL + + +KA+ L M
Sbjct: 132 AQQEFKNANAVMEYEKIAEVDFEKRDFRKVVFCMDR---ALEFAPACHRFKILKAECLAM 188
Query: 629 LRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTY 662
L +Y EA + L + N A L G Y
Sbjct: 189 LGRYPEAQFVASDILRMDSTN-ADALYVRGLCLY 221
|
|
| UNIPROTKB|E2QWR5 DNAJC7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 182 (69.1 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 59/214 (27%), Positives = 95/214 (44%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
E ++ +GN Y + EA ++YT+ I+ P + + Y NRAAT + LG+
Sbjct: 29 ESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASY----------YGNRAATLMMLGKF 78
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE 568
REAL D + +D +F++ ++R KCHL LG A + + L LD + +
Sbjct: 79 REALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALE------LDHK-NAQ 131
Query: 569 AADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYM 628
A + A V EY + E++ ++R AL + + +KA+ L M
Sbjct: 132 AHQEFKNANAVIEYEKIAETDFEKRDFRKVVFCMDR---ALEFAPACHRFKILKAECLAM 188
Query: 629 LRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTY 662
L +Y EA + L + N A L G Y
Sbjct: 189 LGRYPEAQSVASDILRMDSTN-ADALYVRGLCLY 221
|
|
| UNIPROTKB|G3V8B8 Dnajc7 "Protein Dnajc7" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 182 (69.1 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 60/214 (28%), Positives = 95/214 (44%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
E ++ +GN Y + EA ++YT+ I+ P + + Y NRAAT + LGR
Sbjct: 29 ESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASY----------YGNRAATLMMLGRF 78
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE 568
REAL D + +D +F++ ++R KCHL LG A + + L LD + +
Sbjct: 79 REALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALE------LDHK-NAQ 131
Query: 569 AADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYM 628
A + A V EY + E++ ++R AL + + +KA+ L M
Sbjct: 132 AQQEFKNANAVMEYEKIAEVDFEKRDFRKVVFCMDR---ALEFAPACHRFKILKAECLAM 188
Query: 629 LRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTY 662
L +Y EA + L + N A L G Y
Sbjct: 189 LGRYPEAQFVASDILRMDSTN-ADALYVRGLCLY 221
|
|
| RGD|1303226 Dnajc7 "DnaJ (Hsp40) homolog, subfamily C, member 7" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 179 (68.1 bits), Expect = 6.4e-23, Sum P(2) = 6.4e-23
Identities = 60/214 (28%), Positives = 95/214 (44%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
E ++ +GN Y + EA ++YT+ I+ P + + Y NRAAT + LGR
Sbjct: 29 ESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASY----------YGNRAATLMMLGRF 78
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE 568
REAL D + +D +F++ ++R KCHL LG A + + L LD + +
Sbjct: 79 REALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALE------LDHK-NAQ 131
Query: 569 AADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYM 628
A + A V EY + E++ ++R AL + + +KA+ L M
Sbjct: 132 AQQEFKNANAVMEYEKIAEVDFEKRDFRKVVFCMDR---ALEFAPACHRFKILKAEWLAM 188
Query: 629 LRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTY 662
L +Y EA + L + N A L G Y
Sbjct: 189 LGRYPEAQFVASDILRMDSTN-ADALYVRGLCLY 221
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 954 | |||
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-14 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 9e-12 | |
| smart00271 | 60 | smart00271, DnaJ, DnaJ molecular chaperone homolog | 2e-11 | |
| pfam00226 | 63 | pfam00226, DnaJ, DnaJ domain | 4e-11 | |
| cd06257 | 55 | cd06257, DnaJ, DnaJ domain or J-domain | 9e-11 | |
| COG0484 | 371 | COG0484, DnaJ, DnaJ-class molecular chaperone with | 5e-09 | |
| TIGR02349 | 354 | TIGR02349, DnaJ_bact, chaperone protein DnaJ | 1e-08 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 2e-08 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 4e-08 | |
| PRK10767 | 371 | PRK10767, PRK10767, chaperone protein DnaJ; Provis | 1e-07 | |
| PRK14281 | 397 | PRK14281, PRK14281, chaperone protein DnaJ; Provis | 1e-07 | |
| PRK14298 | 377 | PRK14298, PRK14298, chaperone protein DnaJ; Provis | 2e-07 | |
| PRK09430 | 267 | PRK09430, djlA, Dna-J like membrane chaperone prot | 4e-07 | |
| PRK14292 | 371 | PRK14292, PRK14292, chaperone protein DnaJ; Provis | 5e-07 | |
| PTZ00037 | 421 | PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov | 7e-07 | |
| PRK14294 | 366 | PRK14294, PRK14294, chaperone protein DnaJ; Provis | 2e-06 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 6e-06 | |
| PRK14284 | 391 | PRK14284, PRK14284, chaperone protein DnaJ; Provis | 6e-06 | |
| PRK14280 | 376 | PRK14280, PRK14280, chaperone protein DnaJ; Provis | 7e-06 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 8e-06 | |
| PRK10266 | 306 | PRK10266, PRK10266, curved DNA-binding protein Cbp | 8e-06 | |
| PRK14287 | 371 | PRK14287, PRK14287, chaperone protein DnaJ; Provis | 1e-05 | |
| PRK14301 | 373 | PRK14301, PRK14301, chaperone protein DnaJ; Provis | 1e-05 | |
| PRK14279 | 392 | PRK14279, PRK14279, chaperone protein DnaJ; Provis | 3e-05 | |
| PRK14278 | 378 | PRK14278, PRK14278, chaperone protein DnaJ; Provis | 3e-05 | |
| PRK14289 | 386 | PRK14289, PRK14289, chaperone protein DnaJ; Provis | 4e-05 | |
| PRK14283 | 378 | PRK14283, PRK14283, chaperone protein DnaJ; Provis | 4e-05 | |
| PRK14295 | 389 | PRK14295, PRK14295, chaperone protein DnaJ; Provis | 5e-05 | |
| COG2214 | 237 | COG2214, CbpA, DnaJ-class molecular chaperone [Pos | 5e-05 | |
| PRK14276 | 380 | PRK14276, PRK14276, chaperone protein DnaJ; Provis | 5e-05 | |
| PRK14293 | 374 | PRK14293, PRK14293, chaperone protein DnaJ; Provis | 6e-05 | |
| PRK14297 | 380 | PRK14297, PRK14297, chaperone protein DnaJ; Provis | 6e-05 | |
| PRK14291 | 382 | PRK14291, PRK14291, chaperone protein DnaJ; Provis | 7e-05 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 1e-04 | |
| PRK14299 | 291 | PRK14299, PRK14299, chaperone protein DnaJ; Provis | 1e-04 | |
| PRK14285 | 365 | PRK14285, PRK14285, chaperone protein DnaJ; Provis | 1e-04 | |
| PRK14277 | 386 | PRK14277, PRK14277, chaperone protein DnaJ; Provis | 2e-04 | |
| PRK14290 | 365 | PRK14290, PRK14290, chaperone protein DnaJ; Provis | 2e-04 | |
| PRK14300 | 372 | PRK14300, PRK14300, chaperone protein DnaJ; Provis | 3e-04 | |
| PRK14286 | 372 | PRK14286, PRK14286, chaperone protein DnaJ; Provis | 5e-04 | |
| COG5407 | 610 | COG5407, SEC63, Preprotein translocase subunit Sec | 6e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 7e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.001 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 0.001 | |
| PRK14296 | 372 | PRK14296, PRK14296, chaperone protein DnaJ; Provis | 0.001 | |
| COG1076 | 174 | COG1076, DjlA, DnaJ-domain-containing proteins 1 [ | 0.001 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.002 | |
| PLN03088 | 356 | PLN03088, PLN03088, SGT1, suppressor of G2 allele | 0.002 | |
| PHA03102 | 153 | PHA03102, PHA03102, Small T antigen; Reviewed | 0.003 | |
| TIGR03835 | 871 | TIGR03835, termin_org_DnaJ, terminal organelle ass | 0.003 | |
| PRK14282 | 369 | PRK14282, PRK14282, chaperone protein DnaJ; Provis | 0.004 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-14
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
GN +K G Y EA+E+Y AL + P A + N AAA LG+ +A+ D A+
Sbjct: 7 GNLYYKLGDYDEALEYYEKALELD----PDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62
Query: 788 LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825
LD + KA + + Y +A ++ + + N
Sbjct: 63 LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 9e-12
Identities = 33/106 (31%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
E GN YK + EA ++Y + + P + A Y N AA LG+
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADA----------YYNLAAAYYKLGKY 50
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLN 554
EALED A +DP+ K Y + LG+ E A Y K L
Sbjct: 51 EEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96
|
Length = 100 |
| >gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-11
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQE-----QEIRKA 911
D+Y ILGV + +IKKAYRK ALK+HPDK +E +EI +A
Sbjct: 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEA 51
|
Length = 60 |
| >gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 4e-11
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQE----QEIRKA 911
D+Y ILGV + +IKKAYRK ALK+HPDK +EI +A
Sbjct: 1 DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEA 49
|
DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63 |
| >gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 9e-11
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQE 907
D+Y ILGV + +IKKAYRK ALK+HPDK + + +E
Sbjct: 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEE 41
|
DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55 |
| >gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 5e-09
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKES------PQN-S 919
D+Y ILGV + +IKKAYRK A K+HPD+ + +E K E+ P+ +
Sbjct: 5 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRA 64
Query: 920 HYGRSSDAYGYA 931
Y D +G+A
Sbjct: 65 AY----DQFGHA 72
|
Length = 371 |
| >gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQ---EIRKA 911
D+Y ILGV + +IKKAYRK A K+HPD+ + + E+ EI +A
Sbjct: 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEA 48
|
This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 2e-08
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 7/109 (6%)
Query: 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSL 784
K GN+A+++ + +A++ Y+ A IE +P + + NRAA ALG + D +
Sbjct: 131 KEKGNKAYRNKDFNKAIKLYSKA----IECKP-DPVYYSNRAACHNALGDWEKVVEDTTA 185
Query: 785 AMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI--LENQSAEKA 831
A+ LD +Y+KA++RRA ++ + Y A DL I N+ + +A
Sbjct: 186 ALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA 234
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 4e-08
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALG-QIADAIADC 782
K+ GN FK G Y EA+E Y AL + P A + N A A LG +A+ D
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELD----PDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 783 SLAMALDE 790
A+ LD
Sbjct: 62 EKALELDP 69
|
Length = 69 |
| >gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 1e-07
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIR-KATKE 914
D+Y +LGV + + +IKKAYRK A+K+HPD R+ D+E E + K KE
Sbjct: 5 DYYEVLGVSRNASEDEIKKAYRKLAMKYHPD-RNPGDKEAEEKFKEIKE 52
|
Length = 371 |
| >gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQ---NSHYGR 923
D+Y +LGV S +IKKAYRK ALK+HPDK + + +E K E+ + N R
Sbjct: 4 DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRR 63
Query: 924 SSDAYGYA 931
D +G+A
Sbjct: 64 RYDQFGHA 71
|
Length = 397 |
| >gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 25/48 (52%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQ---EIRKA 911
D+Y ILG+ + DIKKAYRK A+K+HPDK E D E+ EI +A
Sbjct: 6 DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEA 53
|
Length = 377 |
| >gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 4e-07
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDK 898
D Y +LGV SD +IK+AYRK +HHPDK
Sbjct: 201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPDK 232
|
Length = 267 |
| >gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 5e-07
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATK------ESPQNS 919
+D+Y +LGV + +A +IK AYRK ALK+HPD+ E ++ + + ++ + +
Sbjct: 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRA 61
Query: 920 HYGRSSDAYG 929
HY R A G
Sbjct: 62 HYDRFGTAPG 71
|
Length = 371 |
| >gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 7e-07
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 852 HLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKA 911
E D +K Y +L + T ++IKKAYRK A+KHHPDK + ++ +EI +A
Sbjct: 19 GRRKREVDNEK-----LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRA 73
|
Length = 421 |
| >gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 12/72 (16%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQNSHYGRSSD 926
D+Y ILGV + +IKK+YRK A+K+HPD R+ D+E E + +++
Sbjct: 5 DYYEILGVTRDASEEEIKKSYRKLAMKYHPD-RNPGDKEAEEL-----------FKEAAE 52
Query: 927 AYGYACRSSRRQ 938
AY +R
Sbjct: 53 AYEVLSDPKKRG 64
|
Length = 366 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 6e-06
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG-R 507
E + GN +K + EA + Y + + P + A Y N A + LG
Sbjct: 4 EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEA----------YYNLALAYLKLGKD 53
Query: 508 MREALEDCMMAATVDP 523
EALED A +DP
Sbjct: 54 YEEALEDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 6e-06
Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIR 909
+D+Y ILGV + + +IKKAYRK A+K+HPDK D E E R
Sbjct: 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPG-DAEAEKR 43
|
Length = 391 |
| >gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 7e-06
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQ---EIRKA 911
D+Y +LGV S + +IKKAYRK + K+HPD E ++ EI +A
Sbjct: 5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEA 52
|
Length = 376 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 8e-06
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 759 AICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH-EMIRDYTQAASDLQ 817
A N AL LG +AI A+ LD + +A A + ++ +DY +A DL+
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62
Query: 818 RLVSI 822
+ + +
Sbjct: 63 KALEL 67
|
Length = 69 |
| >gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 8e-06
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIR 909
D+Y I+GVK +D IK AYR+ A K+HPD E D E +
Sbjct: 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFK 47
|
Length = 306 |
| >gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 10/71 (14%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQE---QEIRKA--TKESPQ-NSH 920
D+Y +LGV + + ++KKAYRK A K+HPD D E +E+++A T PQ +H
Sbjct: 5 DYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAH 64
Query: 921 YGRSSDAYGYA 931
Y D +G+
Sbjct: 65 Y----DQFGHT 71
|
Length = 371 |
| >gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIR 909
D+Y +LGV + +IKKAYRK AL++HPD R+ + E E +
Sbjct: 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPD-RNPDNPEAEQK 46
|
Length = 373 |
| >gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDK 898
DFY LGV + +A +IKKAYRK A + HPD
Sbjct: 10 DFYKELGVSSDASAEEIKKAYRKLARELHPDA 41
|
Length = 392 |
| >gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPD 897
D+Y +LGV + + A+IK+AYRK A + HPD
Sbjct: 4 DYYGLLGVSRNASDAEIKRAYRKLARELHPD 34
|
Length = 378 |
| >gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKES 915
D+Y +LGV + T +IKKAYRK A+++HPDK + +E K E+
Sbjct: 6 DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEA 54
|
Length = 386 |
| >gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 13/72 (18%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQNSHYGRSSD 926
D+Y +LGV + +IKKAYRK A K+HPD E E++ ++ S+
Sbjct: 6 DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEI-------------SE 52
Query: 927 AYGYACRSSRRQ 938
AY +RQ
Sbjct: 53 AYAVLSDDEKRQ 64
|
Length = 378 |
| >gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 5e-05
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPD 897
D+Y +LGV T A+IKKAYRK A ++HPD
Sbjct: 10 DYYKVLGVPKDATEAEIKKAYRKLAREYHPD 40
|
Length = 389 |
| >gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 45.6 bits (107), Expect = 5e-05
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKA 911
LD+Y ILGV + + +IKKAYRK ALK+HPD+ + E +
Sbjct: 6 LDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFK 51
|
Length = 237 |
| >gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRK 910
++Y LGV + +IKKAYRK + K+HPD E E++ ++
Sbjct: 5 EYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKE 48
|
Length = 380 |
| >gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 6e-05
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE---YDQEQEIRKA 911
D+Y ILGV ++K+AYR+ A K+HPD E D+ +EI +A
Sbjct: 4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRA 51
|
Length = 374 |
| >gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQ 917
D+Y +LG++ + +IKKA+RK A+K+HPDK + +E K E+ Q
Sbjct: 5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQ 55
|
Length = 380 |
| >gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 7e-05
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQ---EIRKA 911
D+Y ILGV + T +IKKAYR+ A K+HPD + E+ EI +A
Sbjct: 4 DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEA 51
|
Length = 382 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 454 RGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALE 513
+GN+AY+N + +A Y++ I KP + YSNRAA +LG + +E
Sbjct: 133 KGNKAYRNKDFNKAIKLYSKAIE-----------CKPDPVYYSNRAACHNALGDWEKVVE 181
Query: 514 DCMMAATVDPNFLKVYMRAAKCHLVLGEIENA 545
D A +DP++ K R A + LG+ +A
Sbjct: 182 DTTAALELDPDYSKALNRRANAYDGLGKYADA 213
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQ---EIRKATK--ESPQNSHY 921
D+Y ILGV + + +IKKA++K A K+HPD E+ EI +A P+
Sbjct: 5 DYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRI 64
Query: 922 GRSSDAYGYACRSSRRQ 938
D YG S+ Q
Sbjct: 65 ---YDTYGTTAASAGWQ 78
|
Length = 291 |
| >gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKES 915
D+Y ILG+ + +IKKAYRK A+K+HPDK + + I K E+
Sbjct: 4 DYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEA 52
|
Length = 365 |
| >gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPD 897
D+Y ILGV + T +IKKAYR+ A K+HPD
Sbjct: 6 DYYEILGVDRNATEEEIKKAYRRLAKKYHPD 36
|
Length = 386 |
| >gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQE 907
D+Y ILGV + + DIKKA+R+ A K HPD E E
Sbjct: 4 DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAE 44
|
Length = 365 |
| >gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 3e-04
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRK 910
D+Y ILGV + + AD+KKAY K A ++HPD D E++ ++
Sbjct: 4 DYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKE 47
|
Length = 372 |
| >gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 868 FYLILGVKASDTAADIKKAYRKAALKHHPDK-RSEYDQEQEIRKATK 913
+Y ILGV S +IK AYRK A+K+HPDK + + E++ ++AT+
Sbjct: 6 YYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATE 52
|
Length = 372 |
| >gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 6e-04
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKE--SPQNSHYGRS 924
D Y ILG+ + DIKK YR ++K HPDK E S Y
Sbjct: 99 DPYEILGIDQDTSERDIKKRYRMLSMKFHPDK---------APPMVNELRSEYEEKYKTI 149
Query: 925 SDAYGYACRSSRRQSRQDNWKTYG 948
+ AYG RR+ N+ YG
Sbjct: 150 TKAYGLLTDKKRRE----NYLNYG 169
|
Length = 610 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.5 bits (98), Expect = 7e-04
Identities = 48/243 (19%), Positives = 76/243 (31%), Gaps = 35/243 (14%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
+ L K L EA + + + L L N +LG+
Sbjct: 60 GLLLLLALALLKLGRLEEALELLEKALELELLPN--------LAEALLNLGLLLEALGKY 111
Query: 509 REALEDCMMAATVDPNFLKVYMRAAK-CHLVLGEIENAQHYYHKLLNSAAAVCLDRRITI 567
EALE A +DP+ A LG+ E A Y K L + +
Sbjct: 112 EEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALL 171
Query: 568 EAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSIS-SCSEKLLEMKADAL 626
L+ + E ALE + +AL ++ + L
Sbjct: 172 ALGALLEALGRYEE-------------------ALELLEKALKLNPDDDAEALLNLGLLY 212
Query: 627 YMLRKYEEAIQLCEHTLPVAEKNF------ASVLADNGSVTYSLARLWRWRLISKSYFCI 680
L KYEEA++ E L + N A +L + G +L L + + + +
Sbjct: 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNL 272
Query: 681 GKL 683
G
Sbjct: 273 GLA 275
|
Length = 291 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.001
Identities = 13/65 (20%), Positives = 25/65 (38%)
Query: 761 CFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLV 820
N LG +A+ A+ LD + A AA + + Y +A D ++ +
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 821 SILEN 825
+ +
Sbjct: 62 ELDPD 66
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.001
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGE-IENAQHYYHK 551
N LG EA+E A +DP+ + Y A +L LG+ E A K
Sbjct: 4 EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63
Query: 552 LLN 554
L
Sbjct: 64 ALE 66
|
Length = 69 |
| >gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRK 910
D+Y +LGV + + +I++AYRK A ++HPD D ++ +
Sbjct: 5 DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVE 48
|
Length = 372 |
| >gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY-DQEQEIRKATKE 914
D +LGV+ IKKAYRK + HPDK + + + I K ++
Sbjct: 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEK 162
|
Length = 174 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.0 bits (94), Expect = 0.002
Identities = 42/253 (16%), Positives = 75/253 (29%), Gaps = 5/253 (1%)
Query: 672 LISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEI--LESSMSLAGTVRALLHHKSAGN 729
L L AL LL+ + + + LE ++ L
Sbjct: 8 LAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLAL 67
Query: 730 EAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALD 789
K GR EA+E AL +E P A N L+ALG+ +A+ A+ALD
Sbjct: 68 ALLKLGRLEEALELLEKAL--ELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD 125
Query: 790 ENYTKAVSRRA-ALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQ 848
+ A + A + DY +A ++ + + + + +
Sbjct: 126 PDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEE 185
Query: 849 ACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEI 908
A L + + + + + Y + AL+ PD +
Sbjct: 186 ALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALL 245
Query: 909 RKATKESPQNSHY 921
+
Sbjct: 246 LLELGRYEEALEA 258
|
Length = 291 |
| >gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 4/100 (4%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
EAF + AV+ YT A I+ P A + +RA A LG +A+AD + A+
Sbjct: 9 AKEAFVDDDFALAVDLYTQA----IDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE 64
Query: 788 LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827
LD + KA R+ + +Y A + L++ S+ S
Sbjct: 65 LDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDS 104
|
Length = 356 |
| >gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 870 LILGVKASDTAADIKKAYRKAALKHHPDK 898
L L A ++KAY + L+ HPDK
Sbjct: 11 LGLPRSAWGNLPLMRKAYLRKCLEFHPDK 39
|
Length = 153 |
| >gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ | Back alignment and domain information |
|---|
Score = 41.0 bits (95), Expect = 0.003
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQ---EIRKATKESPQNSHYGR 923
D+Y +LG+ +IKKA+RK A K+HPD+ D EI +A + N
Sbjct: 3 DYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEAN-DVLSNPKKRA 61
Query: 924 SSDAYGY 930
+ D YG+
Sbjct: 62 NYDKYGH 68
|
This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871 |
| >gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIR 909
D+Y ILGV + T +IK+AY++ + HPD+ E +E E +
Sbjct: 5 DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQK 47
|
Length = 369 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 954 | |||
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 100.0 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.97 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.97 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.96 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.95 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.94 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.92 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.89 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.88 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.88 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.88 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.87 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.87 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.85 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.83 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.8 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.79 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.79 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.78 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.78 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.77 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.75 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.75 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.75 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.75 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.75 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.75 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.74 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.73 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.72 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.72 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.71 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.7 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.7 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.7 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.69 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.69 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.68 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.68 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.67 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.66 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.66 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.65 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.64 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.64 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.62 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.61 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.61 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.6 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.59 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.59 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.59 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.57 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.57 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.56 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.56 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.56 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.56 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.54 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.54 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.51 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.5 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.5 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.48 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.48 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.48 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.48 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.47 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.47 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.45 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.44 | |
| COG0484 | 371 | DnaJ DnaJ-class molecular chaperone with C-termina | 99.41 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.41 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.4 | |
| KOG0713 | 336 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.39 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.39 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.38 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.37 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.37 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.35 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 99.32 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 99.32 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.32 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.31 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.26 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.25 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.25 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.24 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.24 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.24 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.22 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.21 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.2 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.19 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.19 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.18 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 99.17 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.17 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.16 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.15 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.13 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.12 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.12 | |
| KOG0712 | 337 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.1 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.1 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.09 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.09 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.09 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.08 | |
| PRK14288 | 369 | chaperone protein DnaJ; Provisional | 99.08 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.08 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.08 | |
| PTZ00037 | 421 | DnaJ_C chaperone protein; Provisional | 99.07 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.05 | |
| PRK14296 | 372 | chaperone protein DnaJ; Provisional | 99.02 | |
| PRK14279 | 392 | chaperone protein DnaJ; Provisional | 99.01 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.0 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.95 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.94 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.93 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.93 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.92 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.92 | |
| KOG0719 | 264 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.92 | |
| PRK14286 | 372 | chaperone protein DnaJ; Provisional | 98.92 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.91 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.91 | |
| PRK14282 | 369 | chaperone protein DnaJ; Provisional | 98.91 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.9 | |
| PRK14287 | 371 | chaperone protein DnaJ; Provisional | 98.9 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.9 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.88 | |
| PRK14298 | 377 | chaperone protein DnaJ; Provisional | 98.88 | |
| PRK14283 | 378 | chaperone protein DnaJ; Provisional | 98.87 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.87 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.87 | |
| PRK14285 | 365 | chaperone protein DnaJ; Provisional | 98.86 | |
| PRK14278 | 378 | chaperone protein DnaJ; Provisional | 98.86 | |
| PRK14299 | 291 | chaperone protein DnaJ; Provisional | 98.86 | |
| PRK14276 | 380 | chaperone protein DnaJ; Provisional | 98.86 | |
| PRK14294 | 366 | chaperone protein DnaJ; Provisional | 98.86 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.85 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.85 | |
| PRK14277 | 386 | chaperone protein DnaJ; Provisional | 98.84 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.84 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.84 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.83 | |
| PRK14297 | 380 | chaperone protein DnaJ; Provisional | 98.83 | |
| PRK14280 | 376 | chaperone protein DnaJ; Provisional | 98.82 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.82 | |
| PRK14284 | 391 | chaperone protein DnaJ; Provisional | 98.82 | |
| PRK14291 | 382 | chaperone protein DnaJ; Provisional | 98.82 | |
| PRK14301 | 373 | chaperone protein DnaJ; Provisional | 98.82 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.81 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.81 | |
| KOG0716 | 279 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.81 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.8 | |
| PRK14281 | 397 | chaperone protein DnaJ; Provisional | 98.79 | |
| KOG0718 | 546 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.79 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 98.78 | |
| PRK14295 | 389 | chaperone protein DnaJ; Provisional | 98.78 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.77 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.76 | |
| PRK10767 | 371 | chaperone protein DnaJ; Provisional | 98.76 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.76 | |
| PRK14290 | 365 | chaperone protein DnaJ; Provisional | 98.75 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.75 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.74 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.74 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.73 | |
| PRK14300 | 372 | chaperone protein DnaJ; Provisional | 98.73 | |
| PTZ00341 | 1136 | Ring-infected erythrocyte surface antigen; Provisi | 98.72 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.72 | |
| PHA03102 | 153 | Small T antigen; Reviewed | 98.71 | |
| KOG0691 | 296 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.71 | |
| TIGR02349 | 354 | DnaJ_bact chaperone protein DnaJ. This model repre | 98.71 | |
| PRK14292 | 371 | chaperone protein DnaJ; Provisional | 98.7 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.69 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.69 | |
| PRK10266 | 306 | curved DNA-binding protein CbpA; Provisional | 98.68 | |
| KOG0717 | 508 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.68 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.68 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 98.67 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.67 | |
| PF00226 | 64 | DnaJ: DnaJ domain; InterPro: IPR001623 The prokary | 98.67 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.66 | |
| PRK14289 | 386 | chaperone protein DnaJ; Provisional | 98.66 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.65 | |
| PRK14293 | 374 | chaperone protein DnaJ; Provisional | 98.64 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.63 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.63 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.62 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.62 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.61 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.59 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 98.58 | |
| KOG0715 | 288 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.58 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.57 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.55 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.55 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.53 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.53 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.52 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.51 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.46 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.45 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.44 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.43 | |
| TIGR03835 | 871 | termin_org_DnaJ terminal organelle assembly protei | 98.42 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.41 | |
| cd06257 | 55 | DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho | 98.4 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.39 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.39 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.39 | |
| KOG0721 | 230 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.38 | |
| smart00271 | 60 | DnaJ DnaJ molecular chaperone homology domain. | 98.36 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.36 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.35 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.34 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 98.34 | |
| PHA02624 | 647 | large T antigen; Provisional | 98.31 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.31 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.29 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.29 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.28 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.28 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.27 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.25 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.25 | |
| PTZ00100 | 116 | DnaJ chaperone protein; Provisional | 98.24 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.24 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.24 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.23 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.22 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.2 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.2 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.2 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.19 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.18 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.18 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.18 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.18 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.17 | |
| COG2214 | 237 | CbpA DnaJ-class molecular chaperone [Posttranslati | 98.13 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 98.13 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 98.13 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.09 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.02 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.97 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.95 | |
| PRK09430 | 267 | djlA Dna-J like membrane chaperone protein; Provis | 97.95 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.94 | |
| PRK01356 | 166 | hscB co-chaperone HscB; Provisional | 97.93 | |
| KOG0722 | 329 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.92 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.91 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.91 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.88 | |
| PRK05014 | 171 | hscB co-chaperone HscB; Provisional | 97.87 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.87 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.84 | |
| KOG0720 | 490 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.81 | |
| KOG0714 | 306 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.78 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.77 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.76 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.72 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.71 | |
| PRK03578 | 176 | hscB co-chaperone HscB; Provisional | 97.71 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.67 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.67 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.63 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.62 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.55 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.54 | |
| PRK00294 | 173 | hscB co-chaperone HscB; Provisional | 97.51 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.51 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.42 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.39 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.38 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 97.38 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.38 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.37 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.31 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.3 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.3 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.26 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.24 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.23 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.21 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.21 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.21 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.19 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.12 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.03 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 97.03 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.01 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.0 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.98 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.97 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.93 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.93 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.93 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.9 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.87 | |
| COG5407 | 610 | SEC63 Preprotein translocase subunit Sec63 [Intrac | 96.83 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.78 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.78 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.69 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 96.66 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 96.65 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 96.58 | |
| KOG1150 | 250 | consensus Predicted molecular chaperone (DnaJ supe | 96.57 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.57 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.5 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 96.45 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.41 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.38 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.37 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.31 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.29 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.11 | |
| PRK01773 | 173 | hscB co-chaperone HscB; Provisional | 96.09 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.06 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.04 | |
| KOG0723 | 112 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.03 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.01 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 95.92 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 95.87 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.83 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 95.81 | |
| TIGR00714 | 157 | hscB Fe-S protein assembly co-chaperone HscB. This | 95.78 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.78 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 95.78 | |
| COG5269 | 379 | ZUO1 Ribosome-associated chaperone zuotin [Transla | 95.75 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 95.75 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.72 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 95.69 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 95.37 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.24 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.16 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 95.16 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.12 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 95.1 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.08 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 95.08 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 95.04 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.01 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 94.98 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 94.9 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 94.68 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 94.64 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.57 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 94.54 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 94.48 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 94.4 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 94.26 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 94.22 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 94.2 | |
| KOG0568 | 342 | consensus Molecular chaperone (DnaJ superfamily) [ | 94.18 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 94.1 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 94.1 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 94.08 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 94.05 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.04 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 94.04 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 93.94 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 93.93 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 93.88 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 93.62 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.62 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 93.55 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 93.5 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 93.45 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 93.44 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 93.33 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.21 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.2 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.14 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 93.1 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.91 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 92.72 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.55 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.42 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 92.34 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 92.12 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.87 | |
| KOG0431 | 453 | consensus Auxilin-like protein and related protein | 91.87 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 91.84 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 91.45 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 91.44 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 91.24 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 91.16 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.03 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.89 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 90.84 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 90.72 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.12 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 89.8 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 89.78 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 89.54 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 89.51 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 89.38 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 89.29 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 88.98 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 88.42 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 88.34 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.32 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 88.07 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 88.02 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.78 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 87.56 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 87.24 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 87.21 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.87 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 86.36 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.32 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 86.06 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 85.99 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 85.87 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 85.28 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 84.8 | |
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 84.69 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 84.38 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 83.87 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 83.71 | |
| COG1076 | 174 | DjlA DnaJ-domain-containing proteins 1 [Posttransl | 83.23 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.29 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 81.9 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 81.85 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 81.36 | |
| TIGR03362 | 301 | VI_chp_7 type VI secretion-associated protein, VC_ | 80.78 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 80.34 |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=391.51 Aligned_cols=440 Identities=20% Similarity=0.255 Sum_probs=379.7
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 442 AAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
...|..++..+++|..++..|+|..|+..|..||+.+|++. .+++.+|.+|+.+|+-..|+.++.++|++
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y----------~aifrRaT~yLAmGksk~al~Dl~rVlel 101 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNY----------QAIFRRATVYLAMGKSKAALQDLSRVLEL 101 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhH----------HHHHHHHHHHhhhcCCccchhhHHHHHhc
Confidence 34578889999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHH
Q 002199 522 DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSA 601 (954)
Q Consensus 522 ~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eA 601 (954)
.|++..+...+|.+++++|++++|...|..+|..+|.+. ...++...+...+........+..++..|++. .+
T Consensus 102 KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~----~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~---~a 174 (504)
T KOG0624|consen 102 KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNG----LVLEAQSKLALIQEHWVLVQQLKSASGSGDCQ---NA 174 (504)
T ss_pred CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcc----hhHHHHHHHHhHHHHHHHHHHHHHHhcCCchh---hH
Confidence 999999999999999999999999999999999999653 23455555666666666666677777888888 78
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcC
Q 002199 602 LERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIG 681 (954)
Q Consensus 602 L~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG 681 (954)
++.+...|++.|+++.++..++.||...|+...||..++.+-++..++.+ .++.++.+++..|
T Consensus 175 i~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe-----------------~~ykis~L~Y~vg 237 (504)
T KOG0624|consen 175 IEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTE-----------------GHYKISQLLYTVG 237 (504)
T ss_pred HHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchH-----------------HHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999887755 6788999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHH
Q 002199 682 KLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAIC 761 (954)
Q Consensus 682 ~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~ 761 (954)
+.+.++...++||+++|++.. +...++.++.+.....-+......++|.++++.+++.++.+|...+.....
T Consensus 238 d~~~sL~~iRECLKldpdHK~--------Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~ 309 (504)
T KOG0624|consen 238 DAENSLKEIRECLKLDPDHKL--------CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNG 309 (504)
T ss_pred hHHHHHHHHHHHHccCcchhh--------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeee
Confidence 999999999999999999866 444555666666666677888999999999999999999998766667777
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcch
Q 002199 762 FCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTI 841 (954)
Q Consensus 762 ~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~ 841 (954)
+..+..|+..-+++-+||+.|.++|.++|+++.++..+|.+|+....|+.||.+|++|+++++++. .
T Consensus 310 ~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~-------------~ 376 (504)
T KOG0624|consen 310 FRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT-------------R 376 (504)
T ss_pred eheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH-------------H
Confidence 888899999999999999999999999999999999999999999999999999999999955544 4
Q ss_pred hhhhhHHHHHhhhhhhhhhccCCCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh----HHH---HHHHHHHH
Q 002199 842 SSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD----QEQ---EIRKATKE 914 (954)
Q Consensus 842 ~~~~L~~a~~~L~~~e~a~k~~~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~----~~e---~~~~~~~~ 914 (954)
+...+.+|++.+ ++....|||+||||.++++..||.|||||+|.+||||.-.+.. ++. +|..+-++
T Consensus 377 ~reGle~Akrlk-------kqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEV 449 (504)
T KOG0624|consen 377 AREGLERAKRLK-------KQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEV 449 (504)
T ss_pred HHHHHHHHHHHH-------HHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHh
Confidence 456777776643 4456789999999999999999999999999999999977654 222 35555677
Q ss_pred CCCCCcccccccccCCC-----CCCCCCCcccccc
Q 002199 915 SPQNSHYGRSSDAYGYA-----CRSSRRQSRQDNW 944 (954)
Q Consensus 915 l~~~~~~r~~yD~~g~~-----~~~~~~~~~~~~~ 944 (954)
|++ |++|+.||..-+| .+++.+..+..||
T Consensus 450 Lsd-~EkRrqFDnGeDPLD~Es~q~GGGg~~Hgf~ 483 (504)
T KOG0624|consen 450 LSD-PEKRRQFDNGEDPLDPESQQGGGGGPFHGFW 483 (504)
T ss_pred hcC-HHHHhhccCCCCCCChhhccCCCCCCCCCCc
Confidence 775 9999999987766 2233333445555
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=344.05 Aligned_cols=394 Identities=29% Similarity=0.392 Sum_probs=339.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 440 ~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
.....-..++....+|+.++++.+|..|+..|+.||+++|++. ..|.+++.+++.+++|++|+-++++.+
T Consensus 41 ~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a----------~yy~nRAa~~m~~~~~~~a~~dar~~~ 110 (486)
T KOG0550|consen 41 FSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNA----------SYYSNRAATLMMLGRFEEALGDARQSV 110 (486)
T ss_pred ccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccch----------hhhchhHHHHHHHHhHhhcccchhhhe
Confidence 3445566788899999999999999999999999999999996 999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHH
Q 002199 520 TVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAAS 599 (954)
Q Consensus 520 el~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~ 599 (954)
+++|...+.+.+.++|+..+++..+|.+.|+.. .| + .+.
T Consensus 111 r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~---~~------------------------~--------------~~a 149 (486)
T KOG0550|consen 111 RLKDGFSKGQLREGQCHLALSDLIEAEEKLKSK---QA------------------------Y--------------KAA 149 (486)
T ss_pred ecCCCccccccchhhhhhhhHHHHHHHHHhhhh---hh------------------------h--------------HHh
Confidence 999999999999999999999999999888721 11 0 111
Q ss_pred HHHHHHHHHHhcC---CCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHH
Q 002199 600 SALERINEALSIS---SCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKS 676 (954)
Q Consensus 600 eAL~~l~kaL~~~---P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~ 676 (954)
.++..+++.+... |.-..+....+.|+..++++++|+..--.++++++.+.. +++..|.+
T Consensus 150 nal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~-----------------al~vrg~~ 212 (486)
T KOG0550|consen 150 NALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAE-----------------ALYVRGLC 212 (486)
T ss_pred hhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhH-----------------HHHhcccc
Confidence 3444444444332 444567788899999999999999999999999998855 77889999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCch
Q 002199 677 YFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRP 756 (954)
Q Consensus 677 y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p 756 (954)
++..++.+.|+.+|+++|.++|++.. ........+.+..+...|+-.++.|+|..|.++|..||.++|.+..
T Consensus 213 ~yy~~~~~ka~~hf~qal~ldpdh~~--------sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~ 284 (486)
T KOG0550|consen 213 LYYNDNADKAINHFQQALRLDPDHQK--------SKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK 284 (486)
T ss_pred cccccchHHHHHHHhhhhccChhhhh--------HHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc
Confidence 99999999999999999999998866 3445566777888999999999999999999999999999999989
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCC
Q 002199 757 FAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRS 836 (954)
Q Consensus 757 ~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~ 836 (954)
.++.+|+++|.+...+|+..+||.+|+.|+.|+|.+++++..+|.|++.+++|++|+++|++++++...
T Consensus 285 ~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s----------- 353 (486)
T KOG0550|consen 285 TNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD----------- 353 (486)
T ss_pred hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999998322
Q ss_pred CCcchhhhhhHHHHHhhhhhhhhhccCCCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChhHH-----HHHHHH
Q 002199 837 PGRTISSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQE-----QEIRKA 911 (954)
Q Consensus 837 P~~~~~~~~L~~a~~~L~~~e~a~k~~~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~~-----e~~~~~ 911 (954)
...++.+++++. ++++.+.+|||+|||+.+.+++.||+++||++||.||||++....++ .++.++
T Consensus 354 ---~e~r~~l~~A~~-------aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeA 423 (486)
T KOG0550|consen 354 ---CEIRRTLREAQL-------ALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEA 423 (486)
T ss_pred ---cchHHHHHHHHH-------HHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHH
Confidence 223345555544 44677789999999999999999999999999999999998765322 345567
Q ss_pred HHHCCCCCcccccccccCCC
Q 002199 912 TKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 912 ~~~l~~~~~~r~~yD~~g~~ 931 (954)
|..+++ +.+|..||+..+-
T Consensus 424 y~il~d-~~kr~r~dsg~dl 442 (486)
T KOG0550|consen 424 YTILSD-PMKRVRFDSGQDL 442 (486)
T ss_pred HHHhcC-HHHHhhcccccch
Confidence 888886 8999999986544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=326.78 Aligned_cols=313 Identities=17% Similarity=0.161 Sum_probs=254.0
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 442 AAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
...|.-+++|.++|+.+-..|++++|+.+|+.+|++.|+.. .+|.++|.++...|+.+.|..+|..||++
T Consensus 110 r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fi----------da~inla~al~~~~~~~~a~~~~~~alql 179 (966)
T KOG4626|consen 110 RKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFI----------DAYINLAAALVTQGDLELAVQCFFEALQL 179 (966)
T ss_pred hccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhh----------HHHhhHHHHHHhcCCCcccHHHHHHHHhc
Confidence 34577889999999999999999999999999999999986 99999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHH
Q 002199 522 DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSA 601 (954)
Q Consensus 522 ~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eA 601 (954)
+|+...++..+|.++..+|+..+|..+|.+|++..|.. +..|-+++..+..+|+.. .|
T Consensus 180 nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f-------------------AiawsnLg~~f~~~Gei~---~a 237 (966)
T KOG4626|consen 180 NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCF-------------------AIAWSNLGCVFNAQGEIW---LA 237 (966)
T ss_pred CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCce-------------------eeeehhcchHHhhcchHH---HH
Confidence 99999999999999999999999999999999999965 345667777777777777 78
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcC
Q 002199 602 LERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIG 681 (954)
Q Consensus 602 L~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG 681 (954)
|..|.+++.++|....+|++||.+|-..+.|++|+..|.+++.+.|.... ++-++|.+|+.+|
T Consensus 238 iq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~-----------------a~gNla~iYyeqG 300 (966)
T KOG4626|consen 238 IQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAV-----------------AHGNLACIYYEQG 300 (966)
T ss_pred HHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchh-----------------hccceEEEEeccc
Confidence 88888888888888888888888888888888888888888888887754 5667788888888
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHH
Q 002199 682 KLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAIC 761 (954)
Q Consensus 682 ~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~ 761 (954)
..+-|+..|++++.+.|..+. ++.++|+++-..|+..+|+.+|.+||.++ |..+.+
T Consensus 301 ~ldlAI~~Ykral~~~P~F~~--------------------Ay~NlanALkd~G~V~ea~~cYnkaL~l~----p~hada 356 (966)
T KOG4626|consen 301 LLDLAIDTYKRALELQPNFPD--------------------AYNNLANALKDKGSVTEAVDCYNKALRLC----PNHADA 356 (966)
T ss_pred cHHHHHHHHHHHHhcCCCchH--------------------HHhHHHHHHHhccchHHHHHHHHHHHHhC----CccHHH
Confidence 888888888888888887654 55666666666666666666666666666 566666
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 762 FCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 762 ~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
++|||.+|..+|.+++|...|.++++..|....++.+||.+|.++|++++|+.+|+.+|.|.|...
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fA 422 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFA 422 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHH
Confidence 666666666666666666666666666666666666666666666666666666666666644433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=318.50 Aligned_cols=335 Identities=18% Similarity=0.168 Sum_probs=248.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccc----cCCc--------------------hHHHHHH
Q 002199 441 TAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAG----CCIK--------------------PLVLCYS 496 (954)
Q Consensus 441 ~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~----~~~~--------------------~la~~~~ 496 (954)
....|+.+++|..+|..+..+|+...|..+|..||+++|....+. ...+ .++.+|.
T Consensus 143 iel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiaws 222 (966)
T KOG4626|consen 143 IELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWS 222 (966)
T ss_pred HhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeeh
Confidence 345577778888888888888888888888888888877654100 0000 0234555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHH
Q 002199 497 NRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKA 576 (954)
Q Consensus 497 ~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~ 576 (954)
++|-++..+|+.-.||..|++|+.++|.++.+|++||.+|..++.|+.|+.+|.+|+.+.|..
T Consensus 223 nLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~----------------- 285 (966)
T KOG4626|consen 223 NLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH----------------- 285 (966)
T ss_pred hcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc-----------------
Confidence 666666666666666666666666666666666666666666666666666666666665544
Q ss_pred HhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhc
Q 002199 577 QKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLAD 656 (954)
Q Consensus 577 ~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~ 656 (954)
+..+-+++..|+.+|..+ -||..|+++|.+.|..+.++.++|.++-..|+..+|..+|.++|.+.|....
T Consensus 286 --A~a~gNla~iYyeqG~ld---lAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~had----- 355 (966)
T KOG4626|consen 286 --AVAHGNLACIYYEQGLLD---LAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHAD----- 355 (966)
T ss_pred --hhhccceEEEEeccccHH---HHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHH-----
Confidence 334455566677777777 6777788888888888888888888888888888888888888888776654
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 002199 657 NGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGR 736 (954)
Q Consensus 657 ~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~ 736 (954)
+.++||.+|..+|.+++|..+|.++++..|.. +.++.++|.+|.++|+
T Consensus 356 ------------am~NLgni~~E~~~~e~A~~ly~~al~v~p~~--------------------aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 356 ------------AMNNLGNIYREQGKIEEATRLYLKALEVFPEF--------------------AAAHNNLASIYKQQGN 403 (966)
T ss_pred ------------HHHHHHHHHHHhccchHHHHHHHHHHhhChhh--------------------hhhhhhHHHHHHhccc
Confidence 56777888888888888888888887776644 3467889999999999
Q ss_pred HHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 002199 737 YTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDL 816 (954)
Q Consensus 737 ~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ 816 (954)
+++|+.+|+.||.+. |..+.+|.|+|..|..+|+...|+.+|.+||.++|.+++|+.+||.+|...|+..+||..|
T Consensus 404 l~~Ai~~YkealrI~----P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 404 LDDAIMCYKEALRIK----PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred HHHHHHHHHHHHhcC----chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 999999999999998 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHH
Q 002199 817 QRLVSILENQSAEKAKQSRSPGRTISSRDLRQACR 851 (954)
Q Consensus 817 ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~ 851 (954)
+.+|++ .|+.+.+...+..+.+
T Consensus 480 ~~aLkl-------------kPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 480 RTALKL-------------KPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHcc-------------CCCCchhhhHHHHHHH
Confidence 999999 4555555555555544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-29 Score=307.52 Aligned_cols=332 Identities=17% Similarity=0.180 Sum_probs=274.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 440 ~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
........+..+..+|+.++..|+|++|+.+|+++|.+.|+ + ..|.++|.||+.+|++++|+.+|+++|
T Consensus 119 ~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~----------~~~~n~a~~~~~l~~~~~Ai~~~~~al 187 (615)
T TIGR00990 119 SEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P----------VYYSNRAACHNALGDWEKVVEDTTAAL 187 (615)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h----------HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33444566889999999999999999999999999999996 3 789999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHH------HHHHHHHHHh-----------H---
Q 002199 520 TVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE------AADGLQKAQK-----------V--- 579 (954)
Q Consensus 520 el~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~e------a~~~l~~~~~-----------~--- 579 (954)
+++|++.++++++|.+|..+|++++|+..|..++.+++..........+ +......... +
T Consensus 188 ~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 267 (615)
T TIGR00990 188 ELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNY 267 (615)
T ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999998887665432110000000 0000000000 0
Q ss_pred ------------------------HHHHHHHHHHHH---hcChHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHc
Q 002199 580 ------------------------TEYINCSGKLLE---QKTSEAASSALERINEALSI---SSCSEKLLEMKADALYML 629 (954)
Q Consensus 580 ------------------------~~~l~~a~~ll~---~g~~~~a~eAL~~l~kaL~~---~P~~~~~~~~lA~~~~~l 629 (954)
..++.++..... .+.|+ +|+..|++++.. .|....++..+|.+++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~---~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~ 344 (615)
T TIGR00990 268 LQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYE---EAARAFEKALDLGKLGEKEAIALNLRGTFKCLK 344 (615)
T ss_pred HHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHH---HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Confidence 000111111111 13444 788889999976 477788999999999999
Q ss_pred cCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHH
Q 002199 630 RKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILE 709 (954)
Q Consensus 630 g~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~ 709 (954)
|++++|+..|++++.++|.... .|+.+|.++..+|++++|+..|++++.++|.+..
T Consensus 345 g~~~eA~~~~~kal~l~P~~~~-----------------~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~------- 400 (615)
T TIGR00990 345 GKHLEALADLSKSIELDPRVTQ-----------------SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD------- 400 (615)
T ss_pred CCHHHHHHHHHHHHHcCCCcHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-------
Confidence 9999999999999999997643 6888999999999999999999999999887644
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 002199 710 SSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALD 789 (954)
Q Consensus 710 ~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld 789 (954)
.+..+|.+++..|++++|+.+|++++.++ |.+..++.++|.++..+|++++|+..|++++.+.
T Consensus 401 -------------~~~~lg~~~~~~g~~~~A~~~~~kal~l~----P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 401 -------------IYYHRAQLHFIKGEFAQAGKDYQKSIDLD----PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred -------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcC----ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 56678999999999999999999999998 7778889999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 790 ENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 790 P~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
|+++.++..+|.++..+|++++|+..|++++++.|..
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999997753
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-28 Score=264.33 Aligned_cols=351 Identities=19% Similarity=0.190 Sum_probs=244.4
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
.....+..+..+|+.+|++|+|++||++|++||.++|+.+ ..|.|++.||..+|+|++.++++.+||+++
T Consensus 110 ~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~ep----------iFYsNraAcY~~lgd~~~Vied~TkALEl~ 179 (606)
T KOG0547|consen 110 ERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEP----------IFYSNRAACYESLGDWEKVIEDCTKALELN 179 (606)
T ss_pred HHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCc----------hhhhhHHHHHHHHhhHHHHHHHHHHHhhcC
Confidence 3456788999999999999999999999999999999987 899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHH------------------HHhhc--------------h---hhh-------
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHK------------------LLNSA--------------A---AVC------- 560 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yek------------------aL~l~--------------P---~~~------- 560 (954)
|++.+++++++.++..+|++.+|+....- .|+.. | ...
T Consensus 180 P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~ 259 (606)
T KOG0547|consen 180 PDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFG 259 (606)
T ss_pred cHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHh
Confidence 99999999999999999999999876532 11110 0 000
Q ss_pred -------------h--hHHHHHHHHHHHHHH--------Hh-------------------------HHHHHHHHHHHHHh
Q 002199 561 -------------L--DRRITIEAADGLQKA--------QK-------------------------VTEYINCSGKLLEQ 592 (954)
Q Consensus 561 -------------~--~~~~~~ea~~~l~~~--------~~-------------------------~~~~l~~a~~ll~~ 592 (954)
. .........+.+... .. +..+...+.-++-.
T Consensus 260 sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 260 SFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred hccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 0 000011111111100 00 01111111112222
Q ss_pred cChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHH
Q 002199 593 KTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRL 672 (954)
Q Consensus 593 g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~ 672 (954)
|++- .|...++.+|.++|....+|..+|.+|+...+-++-...|.++..++|.+.. .|+.
T Consensus 340 g~~~---~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d-----------------vYyH 399 (606)
T KOG0547|consen 340 GDSL---GAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD-----------------VYYH 399 (606)
T ss_pred CCch---hhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc-----------------hhHh
Confidence 3333 4555666666666666666666666666666666666667776666666654 5666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHH---------HH--------HHHHHHHHHHHHHHHcC
Q 002199 673 ISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAG---------TV--------RALLHHKSAGNEAFKSG 735 (954)
Q Consensus 673 Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~---------~~--------~~~~~~~~lG~~~~~~g 735 (954)
+|++++-++++++|+.-|++++.++|.+.-... ..+..+++ .. .....+...|.++..++
T Consensus 400 RgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i---Ql~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqq 476 (606)
T KOG0547|consen 400 RGQMRFLLQQYEEAIADFQKAISLDPENAYAYI---QLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQ 476 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHH
Confidence 666666666666666666666666665543221 11111111 00 11234556799999999
Q ss_pred CHHHHHHHHHHHHhhccCCc--hhhHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHH
Q 002199 736 RYTEAVEHYTVALSTNIESR--PFAAICFCNRAAALQ-ALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQA 812 (954)
Q Consensus 736 ~~eeAi~~y~kAL~l~~~~~--p~~a~~~~~lA~~y~-~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeA 812 (954)
+|+.|++.|++|+.+.|..+ ...+..+.+.|.+.. -.+++.+|+..+++|+++||..-.|+..||.+..++|+.++|
T Consensus 477 qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 477 QFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEA 556 (606)
T ss_pred hHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999985321 114455555554443 348999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q 002199 813 ASDLQRLVSILENQ 826 (954)
Q Consensus 813 i~~~ekAL~l~p~~ 826 (954)
+++|++++.+....
T Consensus 557 ielFEksa~lArt~ 570 (606)
T KOG0547|consen 557 IELFEKSAQLARTE 570 (606)
T ss_pred HHHHHHHHHHHHhH
Confidence 99999999985433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-28 Score=266.87 Aligned_cols=354 Identities=25% Similarity=0.324 Sum_probs=281.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~ 527 (954)
+..+..+|+..+..|+|+.|+.+|+.||.++|.++ .+|.|+..+|..+|+|++|+++..+.++++|++++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nh----------vlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~k 71 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNH----------VLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAK 71 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCcc----------chhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhh
Confidence 34577899999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHh-----------------------------
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQK----------------------------- 578 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~----------------------------- 578 (954)
+|.++|..+.-+|+|++|+..|.+.|+.+|++..-...+.++.........
T Consensus 72 gy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~ 151 (539)
T KOG0548|consen 72 GYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKI 151 (539)
T ss_pred HHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHH
Confidence 999999999999999999999999999999886443333332211100000
Q ss_pred ------------------------------------------------------------------------HHHHHHHH
Q 002199 579 ------------------------------------------------------------------------VTEYINCS 586 (954)
Q Consensus 579 ------------------------------------------------------------------------~~~~l~~a 586 (954)
....-.++
T Consensus 152 l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lg 231 (539)
T KOG0548|consen 152 LEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELG 231 (539)
T ss_pred HHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHH
Confidence 11112223
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHH
Q 002199 587 GKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLAR 666 (954)
Q Consensus 587 ~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~ 666 (954)
...+...++. .|++.|..++.++ .+...+.+.|-+|+.+|.+.+++..+..+++......... .. +.+
T Consensus 232 naaykkk~f~---~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~----kl----Iak 299 (539)
T KOG0548|consen 232 NAAYKKKDFE---TAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADY----KL----IAK 299 (539)
T ss_pred HHHHHhhhHH---HHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHH----HH----HHH
Confidence 3344444444 7899999999999 8899999999999999999999999999887765443211 11 122
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcch-hhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCHHHH
Q 002199 667 LWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRY-GSEILESSMSL-----AGTVRALLHHKSAGNEAFKSGRYTEA 740 (954)
Q Consensus 667 l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~-~~~~l~~~~~l-----~~~~~~~~~~~~lG~~~~~~g~~eeA 740 (954)
....+|..|...++++.|+.+|++++.-....... .....+..... +............|+.+|..|+|..|
T Consensus 300 --~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 300 --ALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred --HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHH
Confidence 23347889999999999999999998754431110 01111111111 11223345556779999999999999
Q ss_pred HHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002199 741 VEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLV 820 (954)
Q Consensus 741 i~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL 820 (954)
+.+|++||..+ |.++.+|.|+|.||.+++.+..|+.+++++|+++|++..+|++.|.++..+.+|+.|++.|+.++
T Consensus 378 v~~YteAIkr~----P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 378 VKHYTEAIKRD----PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHhcC----CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHH
Q 002199 821 SILENQSAE 829 (954)
Q Consensus 821 ~l~p~~~~~ 829 (954)
+++|++.+.
T Consensus 454 e~dp~~~e~ 462 (539)
T KOG0548|consen 454 ELDPSNAEA 462 (539)
T ss_pred hcCchhHHH
Confidence 997766554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-27 Score=284.30 Aligned_cols=328 Identities=16% Similarity=0.170 Sum_probs=232.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL- 526 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~- 526 (954)
...|..+|.+|+..|+|++|+..|+++|+++|++. .+|+.+|.+|..+|++++|+.+|..++.+++...
T Consensus 160 ~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~----------~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~ 229 (615)
T TIGR00990 160 PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS----------KALNRRANAYDGLGKYADALLDLTASCIIDGFRNE 229 (615)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccH
Confidence 45799999999999999999999999999999987 8999999999999999999887765543322110
Q ss_pred -----------------------------H---------------------------------HHHHHHHHH---HHcCC
Q 002199 527 -----------------------------K---------------------------------VYMRAAKCH---LVLGE 541 (954)
Q Consensus 527 -----------------------------~---------------------------------a~~~LA~iy---~~lG~ 541 (954)
. ++..++..+ ...++
T Consensus 230 ~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~ 309 (615)
T TIGR00990 230 QSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADES 309 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhh
Confidence 0 001111110 01134
Q ss_pred HHHHHHHHHHHHhhc---hhhhhhHH----------HHHHHHHHHHHHHh-----HHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 542 IENAQHYYHKLLNSA---AAVCLDRR----------ITIEAADGLQKAQK-----VTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 542 ~eeAl~~yekaL~l~---P~~~~~~~----------~~~ea~~~l~~~~~-----~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
|++|+..|++++... |....... ...++...+.++.. ...++.++..+...|+++ +|+.
T Consensus 310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~---eA~~ 386 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPD---KAEE 386 (615)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHH---HHHH
Confidence 555555555555542 22110000 00111111111111 344566677777777777 6777
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCH
Q 002199 604 RINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKL 683 (954)
Q Consensus 604 ~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~ 683 (954)
.|.+++.++|.++.+++.+|.+++.+|++++|+..|++++.+.|++.. .+..+|.+++.+|++
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~-----------------~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF-----------------SHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH-----------------HHHHHHHHHHHCCCH
Confidence 777777777777777777777777777777777777777777776532 566677777777777
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhh--HHH
Q 002199 684 EVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFA--AIC 761 (954)
Q Consensus 684 eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~--a~~ 761 (954)
++|+..|++++...|.+.. .+..+|.++...|++++|+..|++++.+.|...+.. ...
T Consensus 450 ~eA~~~~~~al~~~P~~~~--------------------~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 450 ASSMATFRRCKKNFPEAPD--------------------VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred HHHHHHHHHHHHhCCCChH--------------------HHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 7777777777777665533 566789999999999999999999999986543322 222
Q ss_pred HHHHHHHH-HHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 762 FCNRAAAL-QALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 762 ~~~lA~~y-~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
+.+.+.++ ...|++++|+..|++++.++|++..++..+|.++..+|++++|+.+|++++++.+.
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 33444444 44799999999999999999999999999999999999999999999999999654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-26 Score=279.24 Aligned_cols=313 Identities=13% Similarity=0.051 Sum_probs=279.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 441 TAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT 520 (954)
Q Consensus 441 ~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe 520 (954)
....|...++++.+|...+..|++++|+..|++++.++|++. .++..+|.++..+|++++|+..|+++++
T Consensus 69 l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~----------~a~~~la~~l~~~g~~~~Ai~~l~~Al~ 138 (656)
T PRK15174 69 VLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQP----------EDVLLVASVLLKSKQYATVADLAEQAWL 138 (656)
T ss_pred HHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCCh----------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677889999999999999999999999999999999997 8999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHH
Q 002199 521 VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASS 600 (954)
Q Consensus 521 l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~e 600 (954)
++|+++.++..+|.++..+|++++|+..|++++...|+.. ..+... ..++..|+++ +
T Consensus 139 l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~-------------------~a~~~~-~~l~~~g~~~---e 195 (656)
T PRK15174 139 AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG-------------------DMIATC-LSFLNKSRLP---E 195 (656)
T ss_pred hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH-------------------HHHHHH-HHHHHcCCHH---H
Confidence 9999999999999999999999999999999999888642 112222 2367788888 7
Q ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHH
Q 002199 601 ALERINEALSISS-CSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFC 679 (954)
Q Consensus 601 AL~~l~kaL~~~P-~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~ 679 (954)
|+..+.+++...| ........++.++...|++++|+..|++++.+.|.+.. .++.+|.+|..
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~-----------------~~~~Lg~~l~~ 258 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAA-----------------LRRSLGLAYYQ 258 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHH
Confidence 7888888888875 34455566789999999999999999999999987744 67789999999
Q ss_pred cCCHHH----HHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCc
Q 002199 680 IGKLEV----ALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESR 755 (954)
Q Consensus 680 lG~~ee----Al~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~ 755 (954)
.|++++ |+..|++++.++|.+.. ++..+|.++...|++++|+.+|++++.++
T Consensus 259 ~G~~~eA~~~A~~~~~~Al~l~P~~~~--------------------a~~~lg~~l~~~g~~~eA~~~l~~al~l~---- 314 (656)
T PRK15174 259 SGRSREAKLQAAEHWRHALQFNSDNVR--------------------IVTLYADALIRTGQNEKAIPLLQQSLATH---- 314 (656)
T ss_pred cCCchhhHHHHHHHHHHHHhhCCCCHH--------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----
Confidence 999986 89999999999997643 56678999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 756 PFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 756 p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
|.++.++.++|.+|..+|++++|+..|++++..+|.+..++..+|.++..+|++++|+..|++++++.|+..
T Consensus 315 P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 315 PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 778889999999999999999999999999999999988888889999999999999999999999988764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-25 Score=287.49 Aligned_cols=372 Identities=15% Similarity=0.054 Sum_probs=274.5
Q ss_pred cccHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCc----hHHHHHHHHH
Q 002199 424 QNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIK----PLVLCYSNRA 499 (954)
Q Consensus 424 ~~~~~~~e~~~~~~~~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~----~la~~~~~lA 499 (954)
+...+....+.+. ....|..++++..+|..+++.|++++|+.+|+++++++|++.....+.. .....+..+|
T Consensus 283 g~~~~A~~~l~~a----L~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 283 GQGGKAIPELQQA----VRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred CCHHHHHHHHHHH----HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 3334444444442 2234666889999999999999999999999999999998641100000 0122345668
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHH--------
Q 002199 500 ATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAAD-------- 571 (954)
Q Consensus 500 ~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~-------- 571 (954)
.+++..|++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|+++++++|.+......+.....
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~ 438 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKAL 438 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999987543322222111
Q ss_pred -HHH--------------HHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Q 002199 572 -GLQ--------------KAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAI 636 (954)
Q Consensus 572 -~l~--------------~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi 636 (954)
.+. .......+..++..+...++++ +|+..|++++.++|+++.+++.+|.+|..+|++++|+
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~---eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWA---QAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 010 0111223445677788889998 8999999999999999999999999999999999999
Q ss_pred HHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHH-----H
Q 002199 637 QLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILES-----S 711 (954)
Q Consensus 637 ~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~-----~ 711 (954)
..++++++..|.+.. .++.++..+...+++++|+..++++........ ...+... .
T Consensus 516 ~~l~~al~~~P~~~~-----------------~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~--~~~l~~~l~~~~~ 576 (1157)
T PRK11447 516 ALMRRLAQQKPNDPE-----------------QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSN--IQELAQRLQSDQV 576 (1157)
T ss_pred HHHHHHHHcCCCCHH-----------------HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChh--HHHHHHHHhhhHH
Confidence 999999999987754 455667777778888888887776532211100 0000000 0
Q ss_pred ----------------HHH-HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcC
Q 002199 712 ----------------MSL-AGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQ 774 (954)
Q Consensus 712 ----------------~~l-~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~ 774 (954)
..+ .........+..+|.++...|++++|+..|++++.++ |.+..+++++|.+|..+|+
T Consensus 577 l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~----P~~~~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 577 LETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE----PGNADARLGLIEVDIAQGD 652 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCC
Confidence 000 0000112345567888888888888888888888887 6677888888888888888
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 775 IADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 775 ~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
+++|+..|++++...|+++.++..+|.++..+|++++|+..|++++...|+
T Consensus 653 ~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 653 LAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 888888888888888888888888888888888888888888888887554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-25 Score=268.47 Aligned_cols=306 Identities=13% Similarity=0.047 Sum_probs=275.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~ 527 (954)
..-+......+++.|++.+|+..+..++...|.+. .+++.+|.+.+..|++++|+..|+++++++|+++.
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~----------~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~ 111 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGR----------DLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPE 111 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch----------hHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChH
Confidence 34566778889999999999999999999999997 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINE 607 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~k 607 (954)
++..+|.++..+|++++|+..|++++.++|++ ...+..++..+...|+++ +|+..+.+
T Consensus 112 a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~-------------------~~a~~~la~~l~~~g~~~---eA~~~~~~ 169 (656)
T PRK15174 112 DVLLVASVLLKSKQYATVADLAEQAWLAFSGN-------------------SQIFALHLRTLVLMDKEL---QAISLART 169 (656)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------------HHHHHHHHHHHHHCCChH---HHHHHHHH
Confidence 99999999999999999999999999999975 445677788899999999 77888888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 002199 608 ALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVAL 687 (954)
Q Consensus 608 aL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl 687 (954)
++...|.++.++..++ .++..|++++|+..+++++...|.... ..+..++.++...|++++|+
T Consensus 170 ~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~----------------~~~~~l~~~l~~~g~~~eA~ 232 (656)
T PRK15174 170 QAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQ----------------ESAGLAVDTLCAVGKYQEAI 232 (656)
T ss_pred HHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcch----------------hHHHHHHHHHHHCCCHHHHH
Confidence 9999999988887764 488999999999999999888653211 02345688899999999999
Q ss_pred HHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhccCCchhhHHHHH
Q 002199 688 DLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTE----AVEHYTVALSTNIESRPFAAICFC 763 (954)
Q Consensus 688 ~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~ee----Ai~~y~kAL~l~~~~~p~~a~~~~ 763 (954)
..|++++.+.|.+.. .+..+|.++...|++++ |+..|++++.++ |..+.++.
T Consensus 233 ~~~~~al~~~p~~~~--------------------~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~----P~~~~a~~ 288 (656)
T PRK15174 233 QTGESALARGLDGAA--------------------LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN----SDNVRIVT 288 (656)
T ss_pred HHHHHHHhcCCCCHH--------------------HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC----CCCHHHHH
Confidence 999999999887643 55668999999999996 899999999999 77889999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 764 NRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 764 ~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.+|.++..+|++++|+..+++++.++|+++.++..+|.+|..+|++++|+..|++++...|+.
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999999999999999999999999999999999996654
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-24 Score=269.16 Aligned_cols=327 Identities=17% Similarity=0.177 Sum_probs=247.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
.+..+..+|..+...|++++|+.+|+++++.+|.+. .++.++|.++...|++++|+..|++++..+|.+.
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 533 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFF----------PAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL 533 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcH----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH
Confidence 345566666666666666666666666666666665 5666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERIN 606 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~ 606 (954)
.++..++.++...|++++|+..|++++..+|.. ...++.++..+...|+++ +|+..+.
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------~~~~~~l~~~~~~~~~~~---~A~~~~~ 591 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQE-------------------IEPALALAQYYLGKGQLK---KALAILN 591 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------------------hhHHHHHHHHHHHCCCHH---HHHHHHH
Confidence 666666666666666666666666666666543 334556677777788888 7778888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHH
Q 002199 607 EALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVA 686 (954)
Q Consensus 607 kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeA 686 (954)
+++...|.++.++..+|.++...|++++|+..|+++++..|.+.. .+..+|.+|...|++++|
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A 654 (899)
T TIGR02917 592 EAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL-----------------ALLLLADAYAVMKNYAKA 654 (899)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-----------------HHHHHHHHHHHcCCHHHH
Confidence 888888888888888888888888888888888888888776543 567788888888888888
Q ss_pred HHHHHHHHhhCCCCcchhhHHHHHHH---------HHHHH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002199 687 LDLLQKLEQVGSISDRYGSEILESSM---------SLAGT-----VRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI 752 (954)
Q Consensus 687 l~~l~kal~l~p~~~~~~~~~l~~~~---------~l~~~-----~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~ 752 (954)
+..|++++...|.+............ .+... ......+..+|.+++..|++++|+..|.+++...|
T Consensus 655 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 734 (899)
T TIGR02917 655 ITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734 (899)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Confidence 88888888888876543322111111 11111 11234566789999999999999999999999984
Q ss_pred CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 753 ESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 753 ~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
. . ..+..++.++...|++++|+..+++++..+|++..+++.+|.+|..+|++++|+..|+++++..|++.
T Consensus 735 ~----~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 804 (899)
T TIGR02917 735 S----S-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNA 804 (899)
T ss_pred C----c-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCH
Confidence 3 3 67788999999999999999999999999999999999999999999999999999999999966543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-24 Score=276.25 Aligned_cols=318 Identities=15% Similarity=0.107 Sum_probs=262.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-----
Q 002199 453 LRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK----- 527 (954)
Q Consensus 453 ~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~----- 527 (954)
.+|..++..|++++|+..|+++++.+|.+. .++..+|.+|+.+|++++|+..|+++++++|++..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~----------~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDS----------EALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 568999999999999999999999999987 89999999999999999999999999999997642
Q ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHH
Q 002199 528 ---------VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAA 598 (954)
Q Consensus 528 ---------a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a 598 (954)
.+..+|.++...|++++|+..|++++.++|.+ ...++.++..+...|+++
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~-------------------~~a~~~Lg~~~~~~g~~~-- 402 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD-------------------SYAVLGLGDVAMARKDYA-- 402 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHCCCHH--
Confidence 23456889999999999999999999999975 344667788888888888
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHH------------------------------------------HHHHHHccCHHHHH
Q 002199 599 SSALERINEALSISSCSEKLLEMK------------------------------------------ADALYMLRKYEEAI 636 (954)
Q Consensus 599 ~eAL~~l~kaL~~~P~~~~~~~~l------------------------------------------A~~~~~lg~~eeAi 636 (954)
+|+..|++++.++|.+..++..+ |.++...|++++|+
T Consensus 403 -eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~ 481 (1157)
T PRK11447 403 -AAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAA 481 (1157)
T ss_pred -HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHH
Confidence 77888888888888876655444 44555678999999
Q ss_pred HHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHH-------
Q 002199 637 QLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILE------- 709 (954)
Q Consensus 637 ~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~------- 709 (954)
..|++++++.|++. |+++.+|.+|...|++++|+..|++++.+.|.+.........
T Consensus 482 ~~~~~Al~~~P~~~-----------------~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~ 544 (1157)
T PRK11447 482 ELQRQRLALDPGSV-----------------WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDR 544 (1157)
T ss_pred HHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCC
Confidence 99999999988763 478889999999999999999999999999987654321100
Q ss_pred --HHHHHHHH---------H------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHh
Q 002199 710 --SSMSLAGT---------V------RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQAL 772 (954)
Q Consensus 710 --~~~~l~~~---------~------~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~l 772 (954)
........ + .....+..++..+...|++++|+.+++ .. |.++.+++.+|.++..+
T Consensus 545 ~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~----p~~~~~~~~La~~~~~~ 616 (1157)
T PRK11447 545 DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----QQ----PPSTRIDLTLADWAQQR 616 (1157)
T ss_pred HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hC----CCCchHHHHHHHHHHHc
Confidence 00000000 0 011223467888999999999999877 34 66778889999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 773 GQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 773 g~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|++++++.|++.
T Consensus 617 g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~ 671 (1157)
T PRK11447 617 GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSL 671 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCCh
Confidence 9999999999999999999999999999999999999999999999998865543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-24 Score=269.10 Aligned_cols=346 Identities=16% Similarity=0.131 Sum_probs=242.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
|.....+..++..+...|++++|+..|.+++...|.+. ..+..++.+|...|++++|+..+++++...|.
T Consensus 530 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 599 (899)
T TIGR02917 530 PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEI----------EPALALAQYYLGKGQLKKALAILNEAADAAPD 599 (899)
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch----------hHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 45567788888888888888888888888888888775 67788888888888888888888888888888
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHH
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALER 604 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~ 604 (954)
+..++..+|.++...|++++|+..|+++++..|.+. ..+..++..+...++++ +|+..
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------------------~~~~~l~~~~~~~~~~~---~A~~~ 657 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA-------------------LALLLLADAYAVMKNYA---KAITS 657 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-------------------HHHHHHHHHHHHcCCHH---HHHHH
Confidence 888888888888888888888888888888877642 23444555555566665 55666
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHH
Q 002199 605 INEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLE 684 (954)
Q Consensus 605 l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~e 684 (954)
|.+++...|.+..++..++.++...|++++|+.+++.+....|.... .+..+|.++...|+++
T Consensus 658 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~ 720 (899)
T TIGR02917 658 LKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAAL-----------------GFELEGDLYLRQKDYP 720 (899)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChH-----------------HHHHHHHHHHHCCCHH
Confidence 66666666666666666666666666666666666666655554322 3445566666666666
Q ss_pred HHHHHHHHHHhhCCCCcchhhHHHHHHH---------H-----HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 685 VALDLLQKLEQVGSISDRYGSEILESSM---------S-----LAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALST 750 (954)
Q Consensus 685 eAl~~l~kal~l~p~~~~~~~~~l~~~~---------~-----l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l 750 (954)
+|+..|++++...|...... .+..... . +.........+..+|.++...|++++|+.+|++++..
T Consensus 721 ~A~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 721 AAIQAYRKALKRAPSSQNAI-KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHHhhCCCchHHH-HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 66666666666555441100 0000000 0 0000112345667888888888888888888888888
Q ss_pred ccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHH
Q 002199 751 NIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEK 830 (954)
Q Consensus 751 ~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~ 830 (954)
. |.++.++.++|.++...|+ .+|+.++++++.+.|+++..+..+|.++..+|++++|+.+|++++++.
T Consensus 800 ~----p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~------- 867 (899)
T TIGR02917 800 A----PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA------- 867 (899)
T ss_pred C----CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------
Confidence 7 6677888888888888888 788888888888888888888888888888888888888888888884
Q ss_pred HhhcCCCCcchhhhhhHHHHHhhhhhhh
Q 002199 831 AKQSRSPGRTISSRDLRQACRHLSSMEE 858 (954)
Q Consensus 831 ~~~~~~P~~~~~~~~L~~a~~~L~~~e~ 858 (954)
|.+..++..+..++...+..+.
T Consensus 868 ------~~~~~~~~~l~~~~~~~g~~~~ 889 (899)
T TIGR02917 868 ------PEAAAIRYHLALALLATGRKAE 889 (899)
T ss_pred ------CCChHHHHHHHHHHHHcCCHHH
Confidence 4444455566666555444433
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-22 Score=249.30 Aligned_cols=354 Identities=12% Similarity=0.021 Sum_probs=254.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
+..+.++..+|..+...|++++|+.+|+++|+++|.+. .++..+|.++...|++++|+..++++++.+|+
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~----------~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~ 115 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND----------DYQRGLILTLADAGQYDEALVKAKQLVSGAPD 115 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 44567799999999999999999999999999999997 88999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHH----------HHHHHHh---------HHHHHHH
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAAD----------GLQKAQK---------VTEYINC 585 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~----------~l~~~~~---------~~~~l~~ 585 (954)
++. ++.+|.++...|++++|+..|++++++.|++......+..+.. .+..+.. .......
T Consensus 116 ~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~ 194 (765)
T PRK10049 116 KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAEL 194 (765)
T ss_pred CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999 9999999999999999999999999999987544333222221 1110000 0011111
Q ss_pred HHHHHH-----hcChHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhh
Q 002199 586 SGKLLE-----QKTSEAASSALERINEALSISSCSEK-------LLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASV 653 (954)
Q Consensus 586 a~~ll~-----~g~~~~a~eAL~~l~kaL~~~P~~~~-------~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~ 653 (954)
+...+. .+++..+.+|+..++.++...|.++. ++..+..+++..|++++|+..|+++++..+....
T Consensus 195 ~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-- 272 (765)
T PRK10049 195 VRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-- 272 (765)
T ss_pred HHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH--
Confidence 111111 12233334677777777754332221 2222123345668888888888887776532111
Q ss_pred hhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcch----hhH---------HHHHHHHHHHHH--
Q 002199 654 LADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRY----GSE---------ILESSMSLAGTV-- 718 (954)
Q Consensus 654 ~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~----~~~---------~l~~~~~l~~~~-- 718 (954)
. +...+|.+|+.+|++++|+.+|++++...|..... ... ............
T Consensus 273 ----------~----a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~ 338 (765)
T PRK10049 273 ----------W----AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN 338 (765)
T ss_pred ----------H----HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence 0 12235777888888888888888877766654211 000 001111111111
Q ss_pred ------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHH
Q 002199 719 ------------------RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIA 780 (954)
Q Consensus 719 ------------------~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~ 780 (954)
.....+..+|.++...|++++|+..|++++... |.+..++..+|.++...|++++|+.
T Consensus 339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~----P~n~~l~~~lA~l~~~~g~~~~A~~ 414 (765)
T PRK10049 339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA----PGNQGLRIDYASVLQARGWPRAAEN 414 (765)
T ss_pred cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 112345668888999999999999999999988 6778899999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHH
Q 002199 781 DCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAE 829 (954)
Q Consensus 781 ~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~ 829 (954)
.+++++.++|++..+++.+|.+++.++++++|...++++++..|++...
T Consensus 415 ~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 415 ELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999999999999999999999999999999997776543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-23 Score=233.97 Aligned_cols=315 Identities=16% Similarity=0.145 Sum_probs=260.8
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHH
Q 002199 492 VLCYSNRAATRISL--GRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEA 569 (954)
Q Consensus 492 a~~~~~lA~~y~~l--g~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea 569 (954)
..++..+|..|..+ -+..+|+..|.+.-...++..+++..+|++|+.+++|++|..+|+.+-++.|--..+...+...
T Consensus 317 ~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~ 396 (638)
T KOG1126|consen 317 MELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTT 396 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHH
Confidence 35566666655544 4568999999997777788889999999999999999999999999999998643333322222
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhh
Q 002199 570 ADGLQKAQKVTEYINCSGKLLEQKTSEAASSALER-INEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEK 648 (954)
Q Consensus 570 ~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~-l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~ 648 (954)
+..+++.. ++.+ .+..+..+|..|+.|..+|.||-.+++++.||..|++|++++|.
T Consensus 397 LWHLq~~v-----------------------~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~ 453 (638)
T KOG1126|consen 397 LWHLQDEV-----------------------ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR 453 (638)
T ss_pred HHHHHhhH-----------------------HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc
Confidence 22222211 2222 24567789999999999999999999999999999999999996
Q ss_pred hhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 649 NFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAG 728 (954)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG 728 (954)
. .|+|.++|.-+....+++.|..+|++|+.++|.+.. +|+.+|
T Consensus 454 f-----------------aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn--------------------AwYGlG 496 (638)
T KOG1126|consen 454 F-----------------AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN--------------------AWYGLG 496 (638)
T ss_pred c-----------------chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH--------------------HHHhhh
Confidence 5 258889999999999999999999999999987765 788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 002199 729 NEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRD 808 (954)
Q Consensus 729 ~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~ 808 (954)
.+|.++++++.|.-+|++|+.++ |.+..+.+.+|.++.++|+.++|+..|++|+.++|.++-..+.+|.+++.+++
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~IN----P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEIN----PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCC----ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence 99999999999999999999999 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhhhhccCCCcchhhhhccccCCCHHHHHHHHH
Q 002199 809 YTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYR 888 (954)
Q Consensus 809 ~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~a~k~~~~~dyYkiLgv~~~a~~~eIkkAYr 888 (954)
|++|+..++++.++ .|+.+..+..+++.+++++....+.+. |--++.++|......|+.+..
T Consensus 573 ~~eal~~LEeLk~~-------------vP~es~v~~llgki~k~~~~~~~Al~~-----f~~A~~ldpkg~~i~~k~~~~ 634 (638)
T KOG1126|consen 573 YVEALQELEELKEL-------------VPQESSVFALLGKIYKRLGNTDLALLH-----FSWALDLDPKGAQIQIKAAIE 634 (638)
T ss_pred hHHHHHHHHHHHHh-------------CcchHHHHHHHHHHHHHHccchHHHHh-----hHHHhcCCCccchhhHHHHhh
Confidence 99999999999999 556666678889998888766555432 555667777776655554443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-21 Score=223.63 Aligned_cols=303 Identities=12% Similarity=-0.010 Sum_probs=249.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF- 525 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~- 525 (954)
.....+.+|..++..|++++|+..|.++++.+|.+. .++..+|.++...|++++|+..+++++...+..
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 103 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETV----------ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR 103 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccH----------HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH
Confidence 455677889999999999999999999999999886 899999999999999999999999998864322
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 526 ---LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 526 ---~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
..++..+|.+|...|++++|+..|+++++..|.. ...+..++..+...|+++ +|+
T Consensus 104 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~-------------------~~~~~~la~~~~~~g~~~---~A~ 161 (389)
T PRK11788 104 EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFA-------------------EGALQQLLEIYQQEKDWQ---KAI 161 (389)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcch-------------------HHHHHHHHHHHHHhchHH---HHH
Confidence 3578899999999999999999999999876643 334566777888889998 778
Q ss_pred HHHHHHHhcCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHH
Q 002199 603 ERINEALSISSCSE-----KLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSY 677 (954)
Q Consensus 603 ~~l~kaL~~~P~~~-----~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y 677 (954)
..+.+++...|... .++..+|.++...|++++|+..|+++++..|.... +++.+|.+|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~ 224 (389)
T PRK11788 162 DVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVR-----------------ASILLGDLA 224 (389)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHH-----------------HHHHHHHHH
Confidence 88888888777642 35677899999999999999999999998876533 577899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchh
Q 002199 678 FCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPF 757 (954)
Q Consensus 678 ~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~ 757 (954)
...|++++|+..|++++...|... ...+..++.+|...|++++|+..+++++...| .
T Consensus 225 ~~~g~~~~A~~~~~~~~~~~p~~~-------------------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p----~ 281 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQDPEYL-------------------SEVLPKLMECYQALGDEAEGLEFLRRALEEYP----G 281 (389)
T ss_pred HHCCCHHHHHHHHHHHHHHChhhH-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C
Confidence 999999999999999988765331 12345678899999999999999999999874 3
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHH
Q 002199 758 AAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEM--IRDYTQAASDLQRLVSI 822 (954)
Q Consensus 758 ~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~--lg~~eeAi~~~ekAL~l 822 (954)
.. .+..++.++...|++++|+..++++++..|++......++..+.. .|+..+|+..+++.++.
T Consensus 282 ~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 282 AD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred ch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 33 347899999999999999999999999999987655444433322 45889999988888763
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-20 Score=232.58 Aligned_cols=322 Identities=11% Similarity=0.012 Sum_probs=248.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002199 454 RGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAA 533 (954)
Q Consensus 454 ~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA 533 (954)
.-.++.-.|++++|+..|.+++...|... .++..+|.++..+|++++|+..|+++++++|.++.++..+|
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a----------~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la 90 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPA----------RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLI 90 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34456788999999999999999888875 78999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCC
Q 002199 534 KCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISS 613 (954)
Q Consensus 534 ~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P 613 (954)
.++...|++++|+..++++++..|++ .. ++.++..+...++++ +|+..+++++.+.|
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~~-------------------~~-~~~la~~l~~~g~~~---~Al~~l~~al~~~P 147 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPDK-------------------AN-LLALAYVYKRAGRHW---DELRAMTQALPRAP 147 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC-------------------HH-HHHHHHHHHHCCCHH---HHHHHHHHHHHhCC
Confidence 99999999999999999999999976 44 677788888999998 89999999999999
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhh----------hhc-------------c-------Ccc---
Q 002199 614 CSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASV----------LAD-------------N-------GSV--- 660 (954)
Q Consensus 614 ~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~----------~~~-------------~-------~~~--- 660 (954)
.++.++..+|.++...+..++|+..+++++. .|...... ... . ..+
T Consensus 148 ~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~ 226 (765)
T PRK10049 148 QTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW 226 (765)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999987776 43320000 000 0 000
Q ss_pred ---hh-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 002199 661 ---TY-SLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGR 736 (954)
Q Consensus 661 ---~~-~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~ 736 (954)
.. ......++..+..+++..|++++|+..|++++...+..+.. ....+|.+|+..|+
T Consensus 227 ~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-------------------a~~~la~~yl~~g~ 287 (765)
T PRK10049 227 HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-------------------AQRWVASAYLKLHQ 287 (765)
T ss_pred ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-------------------HHHHHHHHHHhcCC
Confidence 00 00000011111122345566777777777766654322220 11225889999999
Q ss_pred HHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHH
Q 002199 737 YTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDEN---------------YTKAVSRRAA 801 (954)
Q Consensus 737 ~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~---------------~~~al~~lA~ 801 (954)
+++|+.+|++++..+|...+.....+..++.++...|++++|+..+++++...|. ...+++.+|.
T Consensus 288 ~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~ 367 (765)
T PRK10049 288 PEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQ 367 (765)
T ss_pred cHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHH
Confidence 9999999999998775432223456777788889999999999999999988762 2467888999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 802 LHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 802 ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
++...|++++|+..|++++...|.+..
T Consensus 368 ~l~~~g~~~eA~~~l~~al~~~P~n~~ 394 (765)
T PRK10049 368 VAKYSNDLPQAEMRARELAYNAPGNQG 394 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999665543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-22 Score=226.54 Aligned_cols=310 Identities=14% Similarity=0.141 Sum_probs=268.5
Q ss_pred HHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 446 ETCEMWRLRGNQAY--KNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 446 ~~ae~l~~~G~~~~--~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
...+.++.+|..|. .+-+..+|+.+|.+.-...++.. +++.++|.+|+.+++|++|...|+.+-.+.|
T Consensus 315 ~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~----------wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p 384 (638)
T KOG1126|consen 315 ELMELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTG----------WVLSQLGRAYFELIEYDQAERIFSLVRRIEP 384 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCch----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34445555555554 55667899999999656666665 9999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 524 NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 524 ~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
-..+..-....++..+.+--+--..-+..+..+|.. .+.|...+..+-.+++++ .||.
T Consensus 385 ~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~s-------------------PesWca~GNcfSLQkdh~---~Aik 442 (638)
T KOG1126|consen 385 YRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNS-------------------PESWCALGNCFSLQKDHD---TAIK 442 (638)
T ss_pred ccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCC-------------------cHHHHHhcchhhhhhHHH---HHHH
Confidence 766555555556666655444444445566666643 567888999999999999 8999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCH
Q 002199 604 RINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKL 683 (954)
Q Consensus 604 ~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~ 683 (954)
.|++|+.++|....+|..+|.-+....+++.|...|+.+|..+|.++. +||.+|.+|++++++
T Consensus 443 ~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn-----------------AwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 443 CFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN-----------------AWYGLGTVYLKQEKL 505 (638)
T ss_pred HHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH-----------------HHHhhhhheeccchh
Confidence 999999999999999999999999999999999999999999999876 899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHH
Q 002199 684 EVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFC 763 (954)
Q Consensus 684 eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~ 763 (954)
+.|.-+|++|+.++|.+.. .+..+|.++.+.|+.++|+.+|++|+.++ |.++.+.+
T Consensus 506 e~Ae~~fqkA~~INP~nsv--------------------i~~~~g~~~~~~k~~d~AL~~~~~A~~ld----~kn~l~~~ 561 (638)
T KOG1126|consen 506 EFAEFHFQKAVEINPSNSV--------------------ILCHIGRIQHQLKRKDKALQLYEKAIHLD----PKNPLCKY 561 (638)
T ss_pred hHHHHHHHhhhcCCccchh--------------------HHhhhhHHHHHhhhhhHHHHHHHHHHhcC----CCCchhHH
Confidence 9999999999999997743 44558999999999999999999999999 88889999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 764 NRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 764 ~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
.+|.++..++++++|+..+++.-++-|+...+++.+|.+|.++|+.+.|+..|--|+.++|...+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999886543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=221.52 Aligned_cols=359 Identities=14% Similarity=0.103 Sum_probs=291.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 441 TAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT 520 (954)
Q Consensus 441 ~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe 520 (954)
....|..+-.+.-+|.+.|..++|..|+.+|.++|.++|... +.....+|.|++++++.+.|+..+++|++
T Consensus 157 l~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~---------aD~rIgig~Cf~kl~~~~~a~~a~~ralq 227 (1018)
T KOG2002|consen 157 LKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK---------ADVRIGIGHCFWKLGMSEKALLAFERALQ 227 (1018)
T ss_pred HhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC---------CCccchhhhHHHhccchhhHHHHHHHHHh
Confidence 344577888999999999999999999999999999999876 37788899999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhchhhhhhHHHHHHHHH------------------HHHHHHhH
Q 002199 521 VDPNFLKVYMRAAKCHLVLGE---IENAQHYYHKLLNSAAAVCLDRRITIEAAD------------------GLQKAQKV 579 (954)
Q Consensus 521 l~P~~~~a~~~LA~iy~~lG~---~eeAl~~yekaL~l~P~~~~~~~~~~ea~~------------------~l~~~~~~ 579 (954)
++|.++.++..||.+-+...+ +..|+..+.++...+|.++.....+....- ........
T Consensus 228 Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~a 307 (1018)
T KOG2002|consen 228 LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKA 307 (1018)
T ss_pred cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHH
Confidence 999999999999988877654 678999999999999887654422211111 11122346
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccC
Q 002199 580 TEYINCSGKLLEQKTSEAASSALERINEALSISSCS-EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNG 658 (954)
Q Consensus 580 ~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~-~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~ 658 (954)
..++..|+.+..+|+++ +|..+|.+++..+|++ ...++.+|+.++..|+++.|+..|++++...|++..
T Consensus 308 es~Y~~gRs~Ha~Gd~e---kA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e------- 377 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFE---KAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE------- 377 (1018)
T ss_pred HHHHHHHHHHHhhccHH---HHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH-------
Confidence 67899999999999999 8999999999999988 778889999999999999999999999999999876
Q ss_pred cchhhHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhCCCCcchhhHHHHHHH--------HHHHHH--------
Q 002199 659 SVTYSLARLWRWRLISKSYFCIG----KLEVALDLLQKLEQVGSISDRYGSEILESSM--------SLAGTV-------- 718 (954)
Q Consensus 659 ~~~~~~~~l~a~~~Lg~~y~~lG----~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~--------~l~~~~-------- 718 (954)
....||.+|...+ ..+.|..++.+++...|.+...+..+...+. ..+...
T Consensus 378 ----------tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~ 447 (1018)
T KOG2002|consen 378 ----------TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKG 447 (1018)
T ss_pred ----------HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcC
Confidence 5567788887775 5788888999988888777665432111110 000000
Q ss_pred --HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----ccCC-chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 002199 719 --RALLHHKSAGNEAFKSGRYTEAVEHYTVALST-----NIES-RPFAAICFCNRAAALQALGQIADAIADCSLAMALDE 790 (954)
Q Consensus 719 --~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l-----~~~~-~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP 790 (954)
-....++++|..++..|++.+|...|..|+.. +++. ........||+|.++..+++++.|...|..++..+|
T Consensus 448 ~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp 527 (1018)
T KOG2002|consen 448 KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP 527 (1018)
T ss_pred CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc
Confidence 11356778999999999999999999999987 1111 123455789999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 791 NYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 791 ~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
.++.+++.+|.+....++..+|...+..++.++..+++
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ 565 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPN 565 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcH
Confidence 99999999998888999999999999999999655444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-20 Score=234.44 Aligned_cols=310 Identities=12% Similarity=-0.012 Sum_probs=253.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHc-------------------
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISL------------------- 505 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~l------------------- 505 (954)
|...+.+.+.+....++|++.+|...|.+++... .+.. .-..+...++.+|...
T Consensus 373 ~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~------~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 445 (987)
T PRK09782 373 PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQ-GDAR------LSQTLMARLASLLESHPYLATPAKVAILSKPLPLA 445 (987)
T ss_pred CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCC-cccc------cCHHHHHHHHHHHHhCCcccchHHHHHhccccccc
Confidence 4456778888999999999999999999999873 3220 0012233555555544
Q ss_pred ------CCHH---HHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHH
Q 002199 506 ------GRMR---EALEDCMMAATVDPN--FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQ 574 (954)
Q Consensus 506 ------g~~e---eAl~~~~kALel~P~--~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~ 574 (954)
|++. .+...+.+++..+|. ++.+|+.+|.|+.. +++.+|+..|.+++...|+.
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~--------------- 509 (987)
T PRK09782 446 EQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDA--------------- 509 (987)
T ss_pred hhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCch---------------
Confidence 3332 344555666667788 99999999999998 89999999999999998863
Q ss_pred HHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhh
Q 002199 575 KAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVL 654 (954)
Q Consensus 575 ~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~ 654 (954)
...+..+..+...|+++ +|+..|++++...|.. ..+..+|.++...|++++|+.+|+++++..|....
T Consensus 510 -----~~~L~lA~al~~~Gr~e---eAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~--- 577 (987)
T PRK09782 510 -----WQHRAVAYQAYQVEDYA---TALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNA--- 577 (987)
T ss_pred -----HHHHHHHHHHHHCCCHH---HHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHH---
Confidence 12555667777889999 7788888887776664 45678899999999999999999999999876532
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002199 655 ADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS 734 (954)
Q Consensus 655 ~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~ 734 (954)
.+..++..+...|++++|+..|+++++++|. .. .+.++|.++.+.
T Consensus 578 --------------l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~--------------------a~~~LA~~l~~l 622 (987)
T PRK09782 578 --------------LYWWLHAQRYIPGQPELALNDLTRSLNIAPS-AN--------------------AYVARATIYRQR 622 (987)
T ss_pred --------------HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HH--------------------HHHHHHHHHHHC
Confidence 2334555666779999999999999999984 22 466789999999
Q ss_pred CCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 002199 735 GRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAAS 814 (954)
Q Consensus 735 g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~ 814 (954)
|++++|+.+|++++.++ |.++.++.++|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|+.
T Consensus 623 G~~deA~~~l~~AL~l~----Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 623 HNVPAAVSDLRAALELE----PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred CCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999 78889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHH
Q 002199 815 DLQRLVSILENQSA 828 (954)
Q Consensus 815 ~~ekAL~l~p~~~~ 828 (954)
+|++++++.|+...
T Consensus 699 ~l~~Al~l~P~~a~ 712 (987)
T PRK09782 699 YARLVIDDIDNQAL 712 (987)
T ss_pred HHHHHHhcCCCCch
Confidence 99999999776543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-20 Score=212.21 Aligned_cols=281 Identities=15% Similarity=0.112 Sum_probs=239.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
...+.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. .
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~----------- 103 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLT-R----------- 103 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCC-H-----------
Confidence 4567779999999999999999999999999999999999999999999999999999998743211 0
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~ 652 (954)
......+..++..+...|+++ +|+..|.+++...|....++..++.++...|++++|+..++++++..|.+...
T Consensus 104 ---~~~~~~~~~La~~~~~~g~~~---~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 177 (389)
T PRK11788 104 ---EQRLLALQELGQDYLKAGLLD---RAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV 177 (389)
T ss_pred ---HHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH
Confidence 011234677788899999999 78889999999999999999999999999999999999999999887654210
Q ss_pred hhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 653 VLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAF 732 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~ 732 (954)
.....+..+|.++...|++++|+.+|+++++..|.... .+..+|.++.
T Consensus 178 ------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------------~~~~la~~~~ 225 (389)
T PRK11788 178 ------------EIAHFYCELAQQALARGDLDAARALLKKALAADPQCVR--------------------ASILLGDLAL 225 (389)
T ss_pred ------------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHH--------------------HHHHHHHHHH
Confidence 11124567899999999999999999999998775422 4556899999
Q ss_pred HcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHH
Q 002199 733 KSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQA 812 (954)
Q Consensus 733 ~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeA 812 (954)
..|++++|+.+|++++..+| .....++..++.+|...|++++|+..+++++.+.|+... +..++.++...|++++|
T Consensus 226 ~~g~~~~A~~~~~~~~~~~p---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A 301 (389)
T PRK11788 226 AQGDYAAAIEALERVEEQDP---EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAA 301 (389)
T ss_pred HCCCHHHHHHHHHHHHHHCh---hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHH
Confidence 99999999999999999873 233567888999999999999999999999999998754 48899999999999999
Q ss_pred HHHHHHHHHHhhhhH
Q 002199 813 ASDLQRLVSILENQS 827 (954)
Q Consensus 813 i~~~ekAL~l~p~~~ 827 (954)
+..|+++++..|+..
T Consensus 302 ~~~l~~~l~~~P~~~ 316 (389)
T PRK11788 302 QALLREQLRRHPSLR 316 (389)
T ss_pred HHHHHHHHHhCcCHH
Confidence 999999999976654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=234.68 Aligned_cols=290 Identities=11% Similarity=0.036 Sum_probs=254.0
Q ss_pred cCCHHHHH---HHHHHHHHhCCC--CcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002199 461 NNNLTEAE---DFYTQGINSVPL--SETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKC 535 (954)
Q Consensus 461 ~g~y~eAi---~~y~kAL~~~P~--~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~i 535 (954)
.|++.+|. ..+.+++...|. +. .+|+++|.|+.. +++.+|+..+.+++...|+.. .++.+|.+
T Consensus 451 ~~~~~~~~~~~~~~~~al~~~p~~~~~----------~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~a 518 (987)
T PRK09782 451 QSQLPGIADNCPAIVRLLGDMSPSYDA----------AAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQ 518 (987)
T ss_pred HhhhhhhhhhHHHHHHhcccCCCCCCH----------HHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHH
Confidence 34454434 444455555555 54 899999999998 899999999999999999864 47777888
Q ss_pred HHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCC
Q 002199 536 HLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCS 615 (954)
Q Consensus 536 y~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~ 615 (954)
+...|++++|+..|++++...|.. ..++..+..++..|+++ +|+..+++++...|..
T Consensus 519 l~~~Gr~eeAi~~~rka~~~~p~~--------------------~a~~~la~all~~Gd~~---eA~~~l~qAL~l~P~~ 575 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLHDMSN--------------------EDLLAAANTAQAAGNGA---ARDRWLQQAEQRGLGD 575 (987)
T ss_pred HHHCCCHHHHHHHHHHHhccCCCc--------------------HHHHHHHHHHHHCCCHH---HHHHHHHHHHhcCCcc
Confidence 899999999999999988775542 23566778888999998 7889999999999999
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 616 EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQ 695 (954)
Q Consensus 616 ~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~ 695 (954)
..++..++..+..+|++++|+..|++++++.|. .. .+..+|.++..+|++++|+..|++++.
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~-----------------a~~~LA~~l~~lG~~deA~~~l~~AL~ 637 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-AN-----------------AYVARATIYRQRHNVPAAVSDLRAALE 637 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888889999999999999999995 33 678899999999999999999999999
Q ss_pred hCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCH
Q 002199 696 VGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQI 775 (954)
Q Consensus 696 l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~ 775 (954)
++|++.. .+.++|.++...|++++|+.+|++++.++ |.++.+++++|.++..+|++
T Consensus 638 l~Pd~~~--------------------a~~nLG~aL~~~G~~eeAi~~l~~AL~l~----P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 638 LEPNNSN--------------------YQAALGYALWDSGDIAQSREMLERAHKGL----PDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred hCCCCHH--------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCH
Confidence 9998754 56779999999999999999999999999 78899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 776 ADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 776 eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
++|+.+|+++++++|+........|.+.....+++.|.+.|.++..+.|+-.
T Consensus 694 ~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 694 AATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 9999999999999999999999999999999999999999999999987754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.2e-20 Score=199.23 Aligned_cols=369 Identities=16% Similarity=0.146 Sum_probs=285.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCc---------------------hHHHHHHHHHHHHHHc
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIK---------------------PLVLCYSNRAATRISL 505 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~---------------------~la~~~~~lA~~y~~l 505 (954)
+.-.++..|.++-+.|....|+..|..++...|-+.. .|.. .....-+.++.++..+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~--AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWS--AWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchH--HHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 3557899999999999999999999999998887652 1110 0011112355667777
Q ss_pred CCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHH
Q 002199 506 GRMREALEDCMMAATV-DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYIN 584 (954)
Q Consensus 506 g~~eeAl~~~~kALel-~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~ 584 (954)
.+.++++..++..+.. -|.....-...|.++..+.++++|+..|+.+++.+|-...+...
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdl------------------- 301 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDL------------------- 301 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHH-------------------
Confidence 7889999999999988 79998899999999999999999999999999998853222111
Q ss_pred HHHHHHHhcChHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhh
Q 002199 585 CSGKLLEQKTSEAASSALER-INEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYS 663 (954)
Q Consensus 585 ~a~~ll~~g~~~~a~eAL~~-l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~ 663 (954)
....++-..+- ..+.+ .+.+..++...++.-..+|..|...++.+.|+.+|+++|+++|....
T Consensus 302 ySN~LYv~~~~----skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~------------ 365 (559)
T KOG1155|consen 302 YSNVLYVKNDK----SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLS------------ 365 (559)
T ss_pred HhHHHHHHhhh----HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhH------------
Confidence 11112211111 11222 23455667677777888899999999999999999999999998754
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 002199 664 LARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEH 743 (954)
Q Consensus 664 ~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~ 743 (954)
+|.++|.-|..+.+...|+..|++|+.++|.+.. +|+.+|+.|--++...=|+-+
T Consensus 366 -----aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR--------------------AWYGLGQaYeim~Mh~YaLyY 420 (559)
T KOG1155|consen 366 -----AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR--------------------AWYGLGQAYEIMKMHFYALYY 420 (559)
T ss_pred -----HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH--------------------HHhhhhHHHHHhcchHHHHHH
Confidence 8999999999999999999999999999987654 789999999999999999999
Q ss_pred HHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 744 YTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 744 y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
|++|+.+- |.+..+|..||.||.++++.++||.+|.+|+.....+..++..+|.+|..++++++|..+|++.++..
T Consensus 421 fqkA~~~k----PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 421 FQKALELK----PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHhcC----CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999998 88999999999999999999999999999999998899999999999999999999999999999964
Q ss_pred hhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhhhhccCCCcchhhhhccccCCCHHHHHHHHHHHHHhh
Q 002199 824 ENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKH 894 (954)
Q Consensus 824 p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~a~k~~~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~ 894 (954)
.... .+......+...|.......+.-....+|..+.+.-+....|-|...|.....-
T Consensus 497 ~~eg-------------~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 497 ELEG-------------EIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKIQ 554 (559)
T ss_pred Hhhc-------------ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 1110 011233444444544444444444556677776666555556666666655433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-20 Score=205.37 Aligned_cols=293 Identities=15% Similarity=0.118 Sum_probs=237.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHH
Q 002199 492 VLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAAD 571 (954)
Q Consensus 492 a~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~ 571 (954)
+..+-++|.-++..|+|++||++|..||++.|+.+-.|.+++-||..+|++++-++...++|+++|+..........+.+
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 46777889999999999999999999999999999999999999999999999999999999999987654433333333
Q ss_pred HHHHHHh----------------------HHHHHH---------------------------------------------
Q 002199 572 GLQKAQK----------------------VTEYIN--------------------------------------------- 584 (954)
Q Consensus 572 ~l~~~~~----------------------~~~~l~--------------------------------------------- 584 (954)
.+.+... ++..+.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 3332221 000000
Q ss_pred -------HHHHHHHhcChHHHHHHHHHHHHHHhcC---C-CC---------HHHHHHHHHHHHHccCHHHHHHHHHHhch
Q 002199 585 -------CSGKLLEQKTSEAASSALERINEALSIS---S-CS---------EKLLEMKADALYMLRKYEEAIQLCEHTLP 644 (954)
Q Consensus 585 -------~a~~ll~~g~~~~a~eAL~~l~kaL~~~---P-~~---------~~~~~~lA~~~~~lg~~eeAi~~~ekaL~ 644 (954)
.+...+..+..+....|.+.+.+..... + .+ ..++.+.|..++..|++-.|.+.++.+|.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 0111111111111112333332222111 1 12 56788889999999999999999999999
Q ss_pred hhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 002199 645 VAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHH 724 (954)
Q Consensus 645 l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~ 724 (954)
+.|.... .|..+|.+|....+.++-...|.++..++|.++. .|
T Consensus 355 l~~~~~~-----------------lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d--------------------vY 397 (606)
T KOG0547|consen 355 LDPAFNS-----------------LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD--------------------VY 397 (606)
T ss_pred cCcccch-----------------HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc--------------------hh
Confidence 9997643 3778999999999999999999999999999987 67
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002199 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHE 804 (954)
Q Consensus 725 ~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~ 804 (954)
+.+|++++-.++|++|+.-|++++.++ |.++..|..++.+.+++++++++...|+.++..-|+.++.+...|.++.
T Consensus 398 yHRgQm~flL~q~e~A~aDF~Kai~L~----pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLt 473 (606)
T KOG0547|consen 398 YHRGQMRFLLQQYEEAIADFQKAISLD----PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILT 473 (606)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhcC----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHh
Confidence 789999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhh
Q 002199 805 MIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 805 ~lg~~eeAi~~~ekAL~l~p~ 825 (954)
.++++++|++.|.++++|.|.
T Consensus 474 DqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 474 DQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred hHHhHHHHHHHHHHHHhhccc
Confidence 999999999999999999887
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-19 Score=212.17 Aligned_cols=321 Identities=16% Similarity=0.156 Sum_probs=270.0
Q ss_pred HHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCH
Q 002199 464 LTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF-LKVYMRAAKCHLVLGEI 542 (954)
Q Consensus 464 y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~-~~a~~~LA~iy~~lG~~ 542 (954)
++.|...|.-.++..|++. .+++.+|.+.+..++|..|+.+|+++|.++|.. +...+.+|.|+..+|+.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Ni----------l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~ 215 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNI----------LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMS 215 (1018)
T ss_pred HHHHHHHHHHHHhhCCcch----------HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccch
Confidence 5899999999999999986 899999999999999999999999999999975 56778899999999999
Q ss_pred HHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002199 543 ENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMK 622 (954)
Q Consensus 543 eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~l 622 (954)
+.|+..|+++++++|.+ +..+..++...+...+.+....++..+.++..++|.+|.++..|
T Consensus 216 ~~a~~a~~ralqLdp~~-------------------v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~L 276 (1018)
T KOG2002|consen 216 EKALLAFERALQLDPTC-------------------VSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHL 276 (1018)
T ss_pred hhHHHHHHHHHhcChhh-------------------HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHH
Confidence 99999999999999965 45566666666666666666689999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 002199 623 ADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 623 A~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~ 702 (954)
|.-++..|+|+.+..++..++........ ....+|.+|.+|..+|+|++|..+|.++++.++++..
T Consensus 277 An~fyfK~dy~~v~~la~~ai~~t~~~~~--------------~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~ 342 (1018)
T KOG2002|consen 277 ANHFYFKKDYERVWHLAEHAIKNTENKSI--------------KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFV 342 (1018)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhhhhHH--------------HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcc
Confidence 99999999999999999999887632211 1226889999999999999999999999999887722
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhc----CHHHH
Q 002199 703 YGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALG----QIADA 778 (954)
Q Consensus 703 ~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg----~~eeA 778 (954)
..+..+|+.|+..|+++.|+.+|++.+... |.+......||.+|...+ ..+.|
T Consensus 343 -------------------l~~~GlgQm~i~~~dle~s~~~fEkv~k~~----p~~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 343 -------------------LPLVGLGQMYIKRGDLEESKFCFEKVLKQL----PNNYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred -------------------ccccchhHHHHHhchHHHHHHHHHHHHHhC----cchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 356779999999999999999999999999 888999999999998886 78899
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhh
Q 002199 779 IADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEE 858 (954)
Q Consensus 779 i~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~ 858 (954)
..+..++++..|.+.++|+.+|.+|....-+.. +..|..|+.++.... .+--+...+.++..+..++.++.
T Consensus 400 ~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~--------~~ip~E~LNNvaslhf~~g~~~~ 470 (1018)
T KOG2002|consen 400 SNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKG--------KQIPPEVLNNVASLHFRLGNIEK 470 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcC--------CCCCHHHHHhHHHHHHHhcChHH
Confidence 999999999999999999999999998766666 999999998765432 22222233555555555555544
Q ss_pred h
Q 002199 859 D 859 (954)
Q Consensus 859 a 859 (954)
+
T Consensus 471 A 471 (1018)
T KOG2002|consen 471 A 471 (1018)
T ss_pred H
Confidence 3
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-19 Score=209.11 Aligned_cols=327 Identities=17% Similarity=0.177 Sum_probs=265.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF 525 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~ 525 (954)
.....+...|+.++..|++++|+.++.++|+.+|.+. .+|+.+|.+|..+|+.++|+...-.|-.++|.+
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~----------~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d 206 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNP----------IAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKD 206 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccch----------hhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 3467788899999999999999999999999999998 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 002199 526 LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERI 605 (954)
Q Consensus 526 ~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l 605 (954)
...|..++....++|.+.+|+-+|.+|++.+|.+ +.-.+.++..+.+.|++. .|+..+
T Consensus 207 ~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n-------------------~~~~~ers~L~~~~G~~~---~Am~~f 264 (895)
T KOG2076|consen 207 YELWKRLADLSEQLGNINQARYCYSRAIQANPSN-------------------WELIYERSSLYQKTGDLK---RAMETF 264 (895)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc-------------------hHHHHHHHHHHHHhChHH---HHHHHH
Confidence 9999999999999999999999999999999986 455677788888888888 789999
Q ss_pred HHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc
Q 002199 606 NEALSISSCS-----EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI 680 (954)
Q Consensus 606 ~kaL~~~P~~-----~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l 680 (954)
.+++...|.. .......+..+...++-+.|++.++.++........ .--+..++.+++..
T Consensus 265 ~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~---------------~ed~ni~ael~l~~ 329 (895)
T KOG2076|consen 265 LQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEAS---------------LEDLNILAELFLKN 329 (895)
T ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccccc---------------ccHHHHHHHHHHHh
Confidence 9999999832 223344477888888889999999998883322111 01345678888888
Q ss_pred CCHHHHHHHHHHHHhhC--CCC----------------------cchhhHH---------------HHHHHHH---HH--
Q 002199 681 GKLEVALDLLQKLEQVG--SIS----------------------DRYGSEI---------------LESSMSL---AG-- 716 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~--p~~----------------------~~~~~~~---------------l~~~~~l---~~-- 716 (954)
.+++.|+.....-.... +++ ......+ ++.+... ..
T Consensus 330 ~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~ 409 (895)
T KOG2076|consen 330 KQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW 409 (895)
T ss_pred HHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC
Confidence 99999988877655410 000 0000011 0111000 01
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Q 002199 717 TVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAV 796 (954)
Q Consensus 717 ~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al 796 (954)
.......+..++.+|...|+|.+|+.+|..++...+ -.++.+|+.+|.||..+|.+++|+.+|+++|.+.|++.++.
T Consensus 410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~---~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~R 486 (895)
T KOG2076|consen 410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG---YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDAR 486 (895)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc---ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhh
Confidence 224456788899999999999999999999987753 34588999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 797 SRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 797 ~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
..|+.+|..+|+.++|++.+++...-
T Consensus 487 i~Lasl~~~~g~~EkalEtL~~~~~~ 512 (895)
T KOG2076|consen 487 ITLASLYQQLGNHEKALETLEQIINP 512 (895)
T ss_pred hhHHHHHHhcCCHHHHHHHHhcccCC
Confidence 99999999999999999999987733
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-19 Score=191.35 Aligned_cols=337 Identities=19% Similarity=0.176 Sum_probs=257.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~ 527 (954)
...-...|++++++.+|.+|+.+|+.||...|.-. ....+.++.++|..+.+.|+|+.||..|+.+++..|+...
T Consensus 237 g~lkmnigni~~kkr~fskaikfyrmaldqvpsin-----k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a 311 (840)
T KOG2003|consen 237 GILKMNIGNIHFKKREFSKAIKFYRMALDQVPSIN-----KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIA 311 (840)
T ss_pred ceeeeeecceeeehhhHHHHHHHHHHHHhhccccc-----hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHh
Confidence 33446789999999999999999999999999864 4556899999999999999999999999999999998864
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhch--h--------hhhhHHHHHHH-----HHHHHHHHh--------------
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNSAA--A--------VCLDRRITIEA-----ADGLQKAQK-------------- 578 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l~P--~--------~~~~~~~~~ea-----~~~l~~~~~-------------- 578 (954)
-++|-.|++..|+-++-.+.|.+.+.+-- + +-.+...+.++ +..+++-..
T Consensus 312 -~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kii 390 (840)
T KOG2003|consen 312 -ALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKII 390 (840)
T ss_pred -hhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 45778999999999999999999987521 0 00011111111 111111000
Q ss_pred ----------------------------HHHHHHHHHHHHHhcChHHHHHHH----------------------------
Q 002199 579 ----------------------------VTEYINCSGKLLEQKTSEAASSAL---------------------------- 602 (954)
Q Consensus 579 ----------------------------~~~~l~~a~~ll~~g~~~~a~eAL---------------------------- 602 (954)
...-++.+..++.+|+++.|.+.+
T Consensus 391 apvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk 470 (840)
T KOG2003|consen 391 APVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGK 470 (840)
T ss_pred ccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhccc
Confidence 122344566777888887665333
Q ss_pred ------HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHH
Q 002199 603 ------ERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKS 676 (954)
Q Consensus 603 ------~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~ 676 (954)
.+...++.++..++.++.+.|.+.+..|++++|.+.|+++|.-+....+ +++++|..
T Consensus 471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e-----------------alfniglt 533 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE-----------------ALFNIGLT 533 (840)
T ss_pred chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH-----------------HHHHhccc
Confidence 3334445555556666666677777777777777777777766554433 66778888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCch
Q 002199 677 YFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRP 756 (954)
Q Consensus 677 y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p 756 (954)
+-.+|++++|+.+|-++..+ ....+..+..++++|....+..+||++|.++..+- |
T Consensus 534 ~e~~~~ldeald~f~klh~i--------------------l~nn~evl~qianiye~led~aqaie~~~q~~sli----p 589 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAI--------------------LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI----P 589 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHH--------------------HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC----C
Confidence 88888888888888766433 22345667788999999999999999999999888 7
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHH
Q 002199 757 FAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKA 831 (954)
Q Consensus 757 ~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~ 831 (954)
.++.++..||.+|-+.|+-.+|.+++-.....-|.+.+..-+||..|+...=+++|+.+|+++--+-|+...|++
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql 664 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL 664 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 888999999999999999999999999989999999999999999999999999999999999999888888764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-18 Score=186.86 Aligned_cols=299 Identities=14% Similarity=0.072 Sum_probs=247.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 002199 454 RGNQAYKNNNLTEAEDFYTQGINS-VPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRA 532 (954)
Q Consensus 454 ~G~~~~~~g~y~eAi~~y~kAL~~-~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~L 532 (954)
++.++-...+.++|+.-+...+.. -|... .+-...|.+...+.++++|+..|+..+..+|-...-.-..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~----------~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdly 302 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSM----------YIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLY 302 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccH----------HHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 344555555899999999999988 67765 6778899999999999999999999999999665555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcC
Q 002199 533 AKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSIS 612 (954)
Q Consensus 533 A~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~ 612 (954)
..+++-..+-.+-.-.-+.+..++.- +.+.+--.|.-|...++.+ +|+.+|+++++++
T Consensus 303 SN~LYv~~~~skLs~LA~~v~~idKy-------------------R~ETCCiIaNYYSlr~eHE---KAv~YFkRALkLN 360 (559)
T KOG1155|consen 303 SNVLYVKNDKSKLSYLAQNVSNIDKY-------------------RPETCCIIANYYSLRSEHE---KAVMYFKRALKLN 360 (559)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHhccC-------------------CccceeeehhHHHHHHhHH---HHHHHHHHHHhcC
Confidence 55555554433322222333333210 1222333344444555555 8999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002199 613 SCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQK 692 (954)
Q Consensus 613 P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~k 692 (954)
|....+|..+|.-|+.+.+...|++.|++|++++|.++. +|+.||++|--++-+.-|+-+|++
T Consensus 361 p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR-----------------AWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 361 PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR-----------------AWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH-----------------HHhhhhHHHHHhcchHHHHHHHHH
Confidence 999999999999999999999999999999999999876 899999999999999999999999
Q ss_pred HHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHh
Q 002199 693 LEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQAL 772 (954)
Q Consensus 693 al~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~l 772 (954)
|+.+.|.+.. .|..+|++|.+.++.++||.+|.+|+... .....++..||.+|..+
T Consensus 424 A~~~kPnDsR--------------------lw~aLG~CY~kl~~~~eAiKCykrai~~~----dte~~~l~~LakLye~l 479 (559)
T KOG1155|consen 424 ALELKPNDSR--------------------LWVALGECYEKLNRLEEAIKCYKRAILLG----DTEGSALVRLAKLYEEL 479 (559)
T ss_pred HHhcCCCchH--------------------HHHHHHHHHHHhccHHHHHHHHHHHHhcc----ccchHHHHHHHHHHHHH
Confidence 9999998865 56779999999999999999999999987 56788999999999999
Q ss_pred cCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 773 GQIADAIADCSLAMA-------LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 773 g~~eeAi~~~ekAL~-------ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
+++.+|..+|++.++ ++|+...+...||.-+.+.+++++|-.+..+++.-.+.
T Consensus 480 ~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 480 KDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred HhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 999999999999998 56778899999999999999999999999888877433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-18 Score=190.64 Aligned_cols=280 Identities=12% Similarity=0.144 Sum_probs=226.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
..+..+.+..++..++..++|.+-.++.+..++.+|-+. .++-..-.|+..+|+..+=...-.+.+...|
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~----------~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP 309 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHL----------PCLPLHIACLYELGKSNKLFLLSHKLVDLYP 309 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCc----------chHHHHHHHHHHhcccchHHHHHHHHHHhCC
Confidence 345566777777777777788887777777777777765 4444333377777777777677777777777
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 524 NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 524 ~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
+.+-.|+..|.-|+..|++.+|+.+|.++..+
T Consensus 310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~l------------------------------------------------ 341 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTL------------------------------------------------ 341 (611)
T ss_pred CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc------------------------------------------------
Confidence 77777777777777777777777777776554
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCH
Q 002199 604 RINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKL 683 (954)
Q Consensus 604 ~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~ 683 (954)
+|....+|...|..+...++.++|+..|..|-++.|.... ..+.+|.-|.+.+.+
T Consensus 342 --------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl-----------------P~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 342 --------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL-----------------PSLYLGMEYMRTNNL 396 (611)
T ss_pred --------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc-----------------hHHHHHHHHHHhccH
Confidence 4556678888899999999999999999999999887654 456789999999999
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC---chhhHH
Q 002199 684 EVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES---RPFAAI 760 (954)
Q Consensus 684 eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~---~p~~a~ 760 (954)
+.|..+|..|+.+.|.++- .+..+|.+.+..+.|.+|+.+|+.++..-+.. .+....
T Consensus 397 kLAe~Ff~~A~ai~P~Dpl--------------------v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p 456 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPSDPL--------------------VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP 456 (611)
T ss_pred HHHHHHHHHHHhcCCCcch--------------------hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH
Confidence 9999999999999998865 45568999999999999999999998542211 124556
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 761 CFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 761 ~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.+.|||.++.+++++++||.+|+++|.+.|.++.++..+|.+|..+|+++.|+.+|.++|-+.|++
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 789999999999999999999999999999999999999999999999999999999999995444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-16 Score=193.55 Aligned_cols=355 Identities=9% Similarity=-0.063 Sum_probs=203.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 440 ~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
.....|..+...+..+.+.+++|+|..|+..|+++++.+|.+. .....++.++...|++++|+..+++++
T Consensus 26 ~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~----------~av~dll~l~~~~G~~~~A~~~~eka~ 95 (822)
T PRK14574 26 GFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQS----------GQVDDWLQIAGWAGRDQEVIDVYERYQ 95 (822)
T ss_pred ccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccch----------hhHHHHHHHHHHcCCcHHHHHHHHHhc
Confidence 3344566778999999999999999999999999999999984 233388888889999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHH
Q 002199 520 TVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAAS 599 (954)
Q Consensus 520 el~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~ 599 (954)
.-.|.....+..+|.+|..+|++++|++.|+++++.+|++... ++.++..+...++.+
T Consensus 96 ~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~-------------------l~gLa~~y~~~~q~~--- 153 (822)
T PRK14574 96 SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDL-------------------ISGMIMTQADAGRGG--- 153 (822)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-------------------HHHHHHHHhhcCCHH---
Confidence 4444445555555889999999999999999999999987322 223334444444444
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcc-------------------
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSV------------------- 660 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~------------------- 660 (954)
+|+..+.+++..+|..... ..++.++..++++.+|+..|+++++..|.+...........
T Consensus 154 eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~ 232 (822)
T PRK14574 154 VVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL 232 (822)
T ss_pred HHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc
Confidence 4555555555555553332 33344444444554455555555555555433211100000
Q ss_pred hhhHHHHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhhCCCCcchh----hHHHHHHHHHHH------HH
Q 002199 661 TYSLARLWRWRLISKSYFCIG------------KLEVALDLLQKLEQVGSISDRYG----SEILESSMSLAG------TV 718 (954)
Q Consensus 661 ~~~~~~l~a~~~Lg~~y~~lG------------~~eeAl~~l~kal~l~p~~~~~~----~~~l~~~~~l~~------~~ 718 (954)
-......|.....+.-..+.. -.+.|+..++..+...+..+... ...+..+..+.. .+
T Consensus 233 f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi 312 (822)
T PRK14574 233 VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLI 312 (822)
T ss_pred cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHH
Confidence 000000010001111111111 23445556666665443333211 011111111110 00
Q ss_pred HHH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC--chhhHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 719 RAL------------LHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES--RPFAAICFCNRAAALQALGQIADAIADCSL 784 (954)
Q Consensus 719 ~~~------------~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~--~p~~a~~~~~lA~~y~~lg~~eeAi~~~ek 784 (954)
... -+....|..|+..++.++|+.+|..++.-.+.. .+........|-.+|+..++|++|..++++
T Consensus 313 ~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~ 392 (822)
T PRK14574 313 KEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVN 392 (822)
T ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 000 112234667777777777777777776644321 122233334555666777777777777777
Q ss_pred HHHhC---------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 785 AMALD---------------ENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 785 AL~ld---------------P~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
..... |+...+...++.++...|++.+|.+.+++.+...|.+.
T Consensus 393 ~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~ 450 (822)
T PRK14574 393 YSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQ 450 (822)
T ss_pred HHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 66532 33456666667777777777777777777777644443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-16 Score=196.97 Aligned_cols=340 Identities=13% Similarity=0.008 Sum_probs=249.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~ 527 (954)
...+..+|..+..+|+|++|+++|+++++.+|+++ .++..++.+|...+++++|++.+++++..+|.+..
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~----------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~ 171 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNP----------DLISGMIMTQADAGRGGVVLKQATELAERDPTVQN 171 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----------HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH
Confidence 34455557788888999999999999999999987 77788889999999999999999999999998655
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHh-----------------HHHHHHHHHHHH
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQK-----------------VTEYINCSGKLL 590 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~-----------------~~~~l~~a~~ll 590 (954)
. ..++.++..++++.+|++.|+++++++|++.........++..+.-... .......+...+
T Consensus 172 ~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~v 250 (822)
T PRK14574 172 Y-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQV 250 (822)
T ss_pred H-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHH
Confidence 4 5566666667888779999999999998765433222222221111100 000111122222
Q ss_pred ---------HhcChHHHHHHHHHHHHHHhc---CCCC----HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhh
Q 002199 591 ---------EQKTSEAASSALERINEALSI---SSCS----EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVL 654 (954)
Q Consensus 591 ---------~~g~~~~a~eAL~~l~kaL~~---~P~~----~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~ 654 (954)
....+..+..|+..++..+.. .|.. ..+..-+-.++...+++.+++..|+.+......-+
T Consensus 251 r~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P---- 326 (822)
T PRK14574 251 RMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMP---- 326 (822)
T ss_pred hhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCC----
Confidence 123455666889989888873 3432 22344455678889999999999998764432111
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002199 655 ADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS 734 (954)
Q Consensus 655 ~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~ 734 (954)
. |+....|..|+.++++++|+.+|+.++.-.+..... ...+.....+...|+..
T Consensus 327 --------~----y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~--------------~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 327 --------D----YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRN--------------SDDLLDADDLYYSLNES 380 (822)
T ss_pred --------H----HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCC--------------CcchHHHHHHHHHHHhc
Confidence 1 244567999999999999999999998866422110 00112233467889999
Q ss_pred CCHHHHHHHHHHHHhhcc-----------CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 735 GRYTEAVEHYTVALSTNI-----------ESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 735 g~~eeAi~~y~kAL~l~~-----------~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
++|++|..++++.....| ...|+...+...++.++...|++.+|++.+++.+...|.+...+..+|.++
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~ 460 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIY 460 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999988554 123667788899999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 804 EMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 804 ~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
...|.+.+|...++.++.+.|++..
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l~P~~~~ 485 (822)
T PRK14574 461 LARDLPRKAEQELKAVESLAPRSLI 485 (822)
T ss_pred HhcCCHHHHHHHHHHHhhhCCccHH
Confidence 9999999999999999999665543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.7e-17 Score=169.53 Aligned_cols=303 Identities=14% Similarity=0.077 Sum_probs=248.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 440 ~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
.....|....+++.+|..|+..|+-.-|+.-+.++|++.|+.. .+...+|.+++++|++++|..+|.++|
T Consensus 64 Ave~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~----------~ARiQRg~vllK~Gele~A~~DF~~vl 133 (504)
T KOG0624|consen 64 AVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM----------AARIQRGVVLLKQGELEQAEADFDQVL 133 (504)
T ss_pred HHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH----------HHHHHhchhhhhcccHHHHHHHHHHHH
Confidence 4556788999999999999999999999999999999999986 899999999999999999999999999
Q ss_pred hcCCCc---HHHHHH------------HHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHH
Q 002199 520 TVDPNF---LKVYMR------------AAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYIN 584 (954)
Q Consensus 520 el~P~~---~~a~~~------------LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~ 584 (954)
.-+|.+ ..++-. ....+...|++..|++....+|++.|-+ +..+..
T Consensus 134 ~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd-------------------a~l~~~ 194 (504)
T KOG0624|consen 134 QHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD-------------------ASLRQA 194 (504)
T ss_pred hcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch-------------------hHHHHH
Confidence 999954 333333 3344556789999999999999998843 344566
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhH
Q 002199 585 CSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSL 664 (954)
Q Consensus 585 ~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~ 664 (954)
++..|+..++.. .||.-+..+-++..++.+.++.++.+++..|+.+.++...+.+|+++|+.-.-... ...+
T Consensus 195 Rakc~i~~~e~k---~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~-----YKkl 266 (504)
T KOG0624|consen 195 RAKCYIAEGEPK---KAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF-----YKKL 266 (504)
T ss_pred HHHHHHhcCcHH---HHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH-----HHHH
Confidence 788889999888 88999999999999999999999999999999999999999999999976321100 0001
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 665 ARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHY 744 (954)
Q Consensus 665 ~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y 744 (954)
..+.-.+.-+......++|.++++..++.++..|...... +..+..+..++...+++.+||...
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir----------------~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIR----------------YNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccccee----------------eeeeheeeecccccCCHHHHHHHH
Confidence 1111122235556788999999999999999988744322 112333567788889999999999
Q ss_pred HHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002199 745 TVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRR 799 (954)
Q Consensus 745 ~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~l 799 (954)
.++|.++ |.+..+++.+|.+|+.-..|+.||..|++|+++++++..+.-.+
T Consensus 331 ~evL~~d----~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 331 KEVLDID----PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred HHHHhcC----chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 9999999 88999999999999999999999999999999999987765444
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.7e-19 Score=195.01 Aligned_cols=261 Identities=19% Similarity=0.166 Sum_probs=105.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002199 453 LRGNQAYKNNNLTEAEDFYTQGINSV--PLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYM 530 (954)
Q Consensus 453 ~~G~~~~~~g~y~eAi~~y~kAL~~~--P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~ 530 (954)
.+|..++..|++++|++++.+++... |.+. ..|..+|.+...+++++.|+..|++++..++..+..+.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~----------~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~ 82 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDP----------EYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYE 82 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccc----------cccccccccccccccccccccccccccccccccccccc
Confidence 34666666666666666665444333 4443 55556666666666666666666666666666555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHh
Q 002199 531 RAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALS 610 (954)
Q Consensus 531 ~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~ 610 (954)
+++.+ ...+++++|+..++++.+.
T Consensus 83 ~l~~l-~~~~~~~~A~~~~~~~~~~------------------------------------------------------- 106 (280)
T PF13429_consen 83 RLIQL-LQDGDPEEALKLAEKAYER------------------------------------------------------- 106 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc-ccccccccccccccccccc-------------------------------------------------------
Confidence 55555 5566666666555554432
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhh--hhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 002199 611 ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVA--EKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALD 688 (954)
Q Consensus 611 ~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~--p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~ 688 (954)
. .++..+.....++...++++++...++++.... +.+ ...|..+|.++...|++++|+.
T Consensus 107 -~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----------------~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 107 -D-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS-----------------ARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp -------------H-HHHTT-HHHHHHHHHHHHH-T---T------------------HHHHHHHHHHHHHCCHHHHHHH
T ss_pred -c-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC-----------------HHHHHHHHHHHHHcCCHHHHHH
Confidence 2 223444555667777788888888877766433 111 1256677888888888888888
Q ss_pred HHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHH
Q 002199 689 LLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAA 768 (954)
Q Consensus 689 ~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~ 768 (954)
.|++++.+.|++.. ....++.++...|+++++.+.+....... |.++.++..+|.+
T Consensus 168 ~~~~al~~~P~~~~--------------------~~~~l~~~li~~~~~~~~~~~l~~~~~~~----~~~~~~~~~la~~ 223 (280)
T PF13429_consen 168 DYRKALELDPDDPD--------------------ARNALAWLLIDMGDYDEAREALKRLLKAA----PDDPDLWDALAAA 223 (280)
T ss_dssp HHHHHHHH-TT-HH--------------------HHHHHHHHHCTTCHHHHHHHHHHHHHHH-----HTSCCHCHHHHHH
T ss_pred HHHHHHHcCCCCHH--------------------HHHHHHHHHHHCCChHHHHHHHHHHHHHC----cCHHHHHHHHHHH
Confidence 88888888887654 33446777888888888888888777776 5566678889999
Q ss_pred HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 769 LQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 769 y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
|..+|++++|+.+|++++..+|+++..+..+|.++...|+.++|...++++++.
T Consensus 224 ~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 224 YLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred hccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999998875
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-17 Score=196.14 Aligned_cols=264 Identities=14% Similarity=0.021 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC---------CHHHHHHHHH
Q 002199 449 EMWRLRGNQAYKN---NNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG---------RMREALEDCM 516 (954)
Q Consensus 449 e~l~~~G~~~~~~---g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg---------~~eeAl~~~~ 516 (954)
..++.+|..++.. +.+++|+.+|++|++++|++. .+|..+|.+|..++ ++++|+..++
T Consensus 259 ~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a----------~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~ 328 (553)
T PRK12370 259 TMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSI----------APYCALAECYLSMAQMGIFDKQNAMIKAKEHAI 328 (553)
T ss_pred HHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccH----------HHHHHHHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 3466677655543 467899999999999999987 88999999887553 4899999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChH
Q 002199 517 MAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSE 596 (954)
Q Consensus 517 kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~ 596 (954)
++++++|+++.++..+|.++..+|++++|+..|+++++++|+
T Consensus 329 ~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-------------------------------------- 370 (553)
T PRK12370 329 KATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-------------------------------------- 370 (553)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------------------------------------
Confidence 999999999999999999999999999999999998887665
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHH
Q 002199 597 AASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKS 676 (954)
Q Consensus 597 ~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~ 676 (954)
++.+++.+|.++...|++++|+..++++++++|.+.. .++.++.+
T Consensus 371 ------------------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~-----------------~~~~~~~~ 415 (553)
T PRK12370 371 ------------------SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA-----------------AGITKLWI 415 (553)
T ss_pred ------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh-----------------hHHHHHHH
Confidence 3444555555555555555555555555555554322 12223334
Q ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCc
Q 002199 677 YFCIGKLEVALDLLQKLEQVG-SISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESR 755 (954)
Q Consensus 677 y~~lG~~eeAl~~l~kal~l~-p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~ 755 (954)
++..|++++|+..+++++... |..+. .+..+|.++...|++++|+..+.+++...
T Consensus 416 ~~~~g~~eeA~~~~~~~l~~~~p~~~~--------------------~~~~la~~l~~~G~~~eA~~~~~~~~~~~---- 471 (553)
T PRK12370 416 TYYHTGIDDAIRLGDELRSQHLQDNPI--------------------LLSMQVMFLSLKGKHELARKLTKEISTQE---- 471 (553)
T ss_pred HHhccCHHHHHHHHHHHHHhccccCHH--------------------HHHHHHHHHHhCCCHHHHHHHHHHhhhcc----
Confidence 444555555555555555443 22211 23335555555666666666655554444
Q ss_pred hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 756 PFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 756 p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
|....++..++.+|..+|+ +|...+++.++..-....-....+.+|.-.|+-+.|... +++.+.
T Consensus 472 ~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred chhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 4445555555555555552 444444444433222111122255555556665555554 444433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.3e-16 Score=179.97 Aligned_cols=310 Identities=11% Similarity=-0.023 Sum_probs=243.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF 525 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~ 525 (954)
..+......|...+..|+|..|.+.+.++.+..|... ..+...|.++..+|+++.|..++.++++..|+.
T Consensus 82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~----------~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~ 151 (409)
T TIGR00540 82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPV----------LNLIKAAEAAQQRGDEARANQHLEEAAELAGND 151 (409)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCH----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC
Confidence 3566678889999999999999999999999988765 677788999999999999999999999999988
Q ss_pred H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHH
Q 002199 526 L-KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALER 604 (954)
Q Consensus 526 ~-~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~ 604 (954)
. .+...++.++...|++++|+..++++++..|.+ ...+...+..++..|+++ .|+..
T Consensus 152 ~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~-------------------~~~l~ll~~~~~~~~d~~---~a~~~ 209 (409)
T TIGR00540 152 NILVEIARTRILLAQNELHAARHGVDKLLEMAPRH-------------------KEVLKLAEEAYIRSGAWQ---ALDDI 209 (409)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHHhhHH---HHHHH
Confidence 5 566778999999999999999999999999986 344566777888999999 55555
Q ss_pred HHHHHhcCCCCHHH----HHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc
Q 002199 605 INEALSISSCSEKL----LEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI 680 (954)
Q Consensus 605 l~kaL~~~P~~~~~----~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l 680 (954)
+.+.++....++.. ......-++..+..++++..+..+....|..... . ...+..++..+...
T Consensus 210 l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~-----------~--~~l~~~~a~~l~~~ 276 (409)
T TIGR00540 210 IDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRH-----------N--IALKIALAEHLIDC 276 (409)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhC-----------C--HHHHHHHHHHHHHC
Confidence 55665543333222 2222233345555566667777777776642110 0 11567789999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhH-
Q 002199 681 GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAA- 759 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a- 759 (954)
|++++|+..++++++..|++...... .-.....+..++...+++.++++++.. |.++
T Consensus 277 g~~~~A~~~l~~~l~~~pd~~~~~~~------------------~l~~~~~l~~~~~~~~~~~~e~~lk~~----p~~~~ 334 (409)
T TIGR00540 277 DDHDSAQEIIFDGLKKLGDDRAISLP------------------LCLPIPRLKPEDNEKLEKLIEKQAKNV----DDKPK 334 (409)
T ss_pred CChHHHHHHHHHHHhhCCCcccchhH------------------HHHHhhhcCCCChHHHHHHHHHHHHhC----CCChh
Confidence 99999999999999999987542100 112233344578899999999999998 6666
Q ss_pred -HHHHHHHHHHHHhcCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 760 -ICFCNRAAALQALGQIADAIADCS--LAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 760 -~~~~~lA~~y~~lg~~eeAi~~~e--kAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
.++..+|.+++.+|+|++|.++|+ .+++..|+... +..+|.++.++|+.++|.++|++++.+.
T Consensus 335 ~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 335 CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 888899999999999999999999 57888897766 5599999999999999999999998773
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.1e-17 Score=178.56 Aligned_cols=244 Identities=17% Similarity=0.062 Sum_probs=175.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002199 462 NNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGE 541 (954)
Q Consensus 462 g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~ 541 (954)
+..+.++..+.++|...|-++ ...+..|+.+|.+|..+|++++|+..|+++++++|+++.+|+.+|.++..+|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTD------EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred hHHHHHHHHHHHHHccccCCc------HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 467888999999997554332 12358899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 002199 542 IENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEM 621 (954)
Q Consensus 542 ~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~ 621 (954)
+++|+..|+++++++| .+..++..
T Consensus 114 ~~~A~~~~~~Al~l~P--------------------------------------------------------~~~~a~~~ 137 (296)
T PRK11189 114 FDAAYEAFDSVLELDP--------------------------------------------------------TYNYAYLN 137 (296)
T ss_pred HHHHHHHHHHHHHhCC--------------------------------------------------------CCHHHHHH
Confidence 9999999988887655 44556777
Q ss_pred HHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q 002199 622 KADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISD 701 (954)
Q Consensus 622 lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~ 701 (954)
+|.++...|++++|+..++++++++|.+.. .. .| ..++...+++++|+..|.+++...+...
T Consensus 138 lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-------------~~--~~---~~l~~~~~~~~~A~~~l~~~~~~~~~~~ 199 (296)
T PRK11189 138 RGIALYYGGRYELAQDDLLAFYQDDPNDPY-------------RA--LW---LYLAESKLDPKQAKENLKQRYEKLDKEQ 199 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-------------HH--HH---HHHHHccCCHHHHHHHHHHHHhhCCccc
Confidence 788888888888888888888888776521 00 11 1223456778888888876654322111
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHH
Q 002199 702 RYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTE--AVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAI 779 (954)
Q Consensus 702 ~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~ee--Ai~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi 779 (954)
. ..+..++..|++.+ +++.+.+++...+...|....+|+++|.++..+|++++|+
T Consensus 200 ~-----------------------~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~ 256 (296)
T PRK11189 200 W-----------------------GWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAA 256 (296)
T ss_pred c-----------------------HHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 1 01233334444432 3333333333222222677889999999999999999999
Q ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHhcC
Q 002199 780 ADCSLAMALDE-NYTKAVSRRAALHEMIRD 808 (954)
Q Consensus 780 ~~~ekAL~ldP-~~~~al~~lA~ly~~lg~ 808 (954)
.+|++|++++| ++++..+.+..+....+.
T Consensus 257 ~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 257 ALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 99999999996 777777666666555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-16 Score=192.13 Aligned_cols=243 Identities=13% Similarity=0.043 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHH
Q 002199 493 LCYSNRAATRISL---GRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEA 569 (954)
Q Consensus 493 ~~~~~lA~~y~~l---g~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea 569 (954)
..++.+|..++.. +.+++|+..|++|++++|+++.+|..+|.+|..++.+... .
T Consensus 259 ~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~----------~------------- 315 (553)
T PRK12370 259 TMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIF----------D------------- 315 (553)
T ss_pred HHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCc----------c-------------
Confidence 3455566555443 3568999999999999999999999999988765432100 0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 570 ADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 570 ~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
..++++ +|+..+++++.++|+++.++..+|.++...|++++|+..|+++++++|++
T Consensus 316 ---------------------~~~~~~---~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~ 371 (553)
T PRK12370 316 ---------------------KQNAMI---KAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS 371 (553)
T ss_pred ---------------------cchHHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 001122 67777888888999999999999999999999999999999999999988
Q ss_pred hhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 650 FASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGN 729 (954)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~ 729 (954)
.. +|+.+|.++...|++++|+..++++++++|.+.. .+..++.
T Consensus 372 ~~-----------------a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~--------------------~~~~~~~ 414 (553)
T PRK12370 372 AD-----------------IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA--------------------AGITKLW 414 (553)
T ss_pred HH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh--------------------hHHHHHH
Confidence 55 6788999999999999999999999999998754 1122455
Q ss_pred HHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCH
Q 002199 730 EAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDY 809 (954)
Q Consensus 730 ~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~ 809 (954)
+++..|++++|+..+++++...+ |..+.++.++|.+|..+|++++|+..+.+++...|....++..++.+|..+|+
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~~~---p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 490 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQHL---QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE- 490 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHhcc---ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH-
Confidence 67778999999999999998753 56778899999999999999999999999999999999999999999999984
Q ss_pred HHHHHHHHHHHHHhh
Q 002199 810 TQAASDLQRLVSILE 824 (954)
Q Consensus 810 eeAi~~~ekAL~l~p 824 (954)
+|...++++++...
T Consensus 491 -~a~~~l~~ll~~~~ 504 (553)
T PRK12370 491 -RALPTIREFLESEQ 504 (553)
T ss_pred -HHHHHHHHHHHHhh
Confidence 78888887776533
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-17 Score=182.52 Aligned_cols=239 Identities=17% Similarity=0.144 Sum_probs=173.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002199 452 RLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMR 531 (954)
Q Consensus 452 ~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~ 531 (954)
+..|..+++.|++.+|+-+|+.|++.+|.+. .+|..||.++...++-..||..+++|++++|++..++..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~ha----------eAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLma 358 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHA----------EAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMA 358 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHH----------HHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHH
Confidence 5689999999999999999999999999996 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhc
Q 002199 532 AAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSI 611 (954)
Q Consensus 532 LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~ 611 (954)
||.+|...|.-.+|+.++.+-|...|.......... .........+ -+........+.|..+...
T Consensus 359 LAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~------------~~~~~~~~s~---~~~~~l~~i~~~fLeaa~~ 423 (579)
T KOG1125|consen 359 LAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE------------NEDFENTKSF---LDSSHLAHIQELFLEAARQ 423 (579)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc------------cccccCCcCC---CCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998774311100000 0000000000 0001111333444455555
Q ss_pred CC--CCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 002199 612 SS--CSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDL 689 (954)
Q Consensus 612 ~P--~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~ 689 (954)
.| .+++++..||.+|...|+|++|+.+|+.||...|.++. .|..||-++....+.++|+..
T Consensus 424 ~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~-----------------lWNRLGAtLAN~~~s~EAIsA 486 (579)
T KOG1125|consen 424 LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYL-----------------LWNRLGATLANGNRSEEAISA 486 (579)
T ss_pred CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHH-----------------HHHHhhHHhcCCcccHHHHHH
Confidence 55 56777777777777777777777777777777777644 566777777777777777777
Q ss_pred HHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002199 690 LQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI 752 (954)
Q Consensus 690 l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~ 752 (954)
|++|+++.|.... +.+++|..++.+|.|.+|+.+|-.||.+.+
T Consensus 487 Y~rALqLqP~yVR--------------------~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 487 YNRALQLQPGYVR--------------------VRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHhcCCCeee--------------------eehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 7777777665533 455667777777777777777777766643
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-15 Score=173.11 Aligned_cols=301 Identities=11% Similarity=0.006 Sum_probs=225.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNR-AATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~l-A~~y~~lg~~eeAl~~~~kALel~P 523 (954)
...+......|...+..|+|++|.+...++-+..+. + .+++.+ +.+...+|+++.|...|.++.+.+|
T Consensus 81 ~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p----------~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~ 149 (398)
T PRK10747 81 RRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-P----------VVNYLLAAEAAQQRGDEARANQHLERAAELAD 149 (398)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-h----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 446667788999999999999999887776665332 2 344444 5666999999999999999999999
Q ss_pred CcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 524 NFLK-VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 524 ~~~~-a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
+... .....+.++...|++++|+..++++++..|++ .......+..+...|+++ +|+
T Consensus 150 ~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~-------------------~~al~ll~~~~~~~gdw~---~a~ 207 (398)
T PRK10747 150 NDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRH-------------------PEVLRLAEQAYIRTGAWS---SLL 207 (398)
T ss_pred cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-------------------HHHHHHHHHHHHHHHhHH---HHH
Confidence 9854 44556999999999999999999999999986 333455567777888998 555
Q ss_pred HHHHHHHhcCCCCHHHHH--------HHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHH
Q 002199 603 ERINEALSISSCSEKLLE--------MKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLIS 674 (954)
Q Consensus 603 ~~l~kaL~~~P~~~~~~~--------~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg 674 (954)
..+.+..+..+.++..+. .+........+-+.....++......|++.. .+..++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~-----------------~~~~~A 270 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVA-----------------LQVAMA 270 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHH-----------------HHHHHH
Confidence 555555554443332211 1111122223334444444444444443432 567789
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC
Q 002199 675 KSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES 754 (954)
Q Consensus 675 ~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~ 754 (954)
..+...|+.++|...++++++..+ ++.. . +.......++++++++.+++.++..
T Consensus 271 ~~l~~~g~~~~A~~~L~~~l~~~~-~~~l--------------------~--~l~~~l~~~~~~~al~~~e~~lk~~--- 324 (398)
T PRK10747 271 EHLIECDDHDTAQQIILDGLKRQY-DERL--------------------V--LLIPRLKTNNPEQLEKVLRQQIKQH--- 324 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCC-CHHH--------------------H--HHHhhccCCChHHHHHHHHHHHhhC---
Confidence 999999999999999999998433 3220 0 1112234599999999999999998
Q ss_pred chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 755 RPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 755 ~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
|.++..+..+|.++...++|++|..+|++++++.|+... +..++.++..+|+.++|..+|++++.+.
T Consensus 325 -P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 325 -GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 888999999999999999999999999999999998654 6689999999999999999999999874
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.5e-16 Score=173.93 Aligned_cols=355 Identities=14% Similarity=0.092 Sum_probs=273.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHH-HHHHH---------cCCHHHHHHHHH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRA-ATRIS---------LGRMREALEDCM 516 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA-~~y~~---------lg~~eeAl~~~~ 516 (954)
.+..++.+|..|....++++|...|.+||..++.+..+ ...++..+...+ ..... .+...+=++.+-
T Consensus 140 essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea---~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~ly 216 (611)
T KOG1173|consen 140 ESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEA---FEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILY 216 (611)
T ss_pred hhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHH---HHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHH
Confidence 34567889999999999999999999999999887511 011111222111 00111 111112222221
Q ss_pred HHH----------hcCC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHh
Q 002199 517 MAA----------TVDP--------NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQK 578 (954)
Q Consensus 517 kAL----------el~P--------~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~ 578 (954)
++. ...| ++.......+..++..++|.+..+..+..++.+|-+..
T Consensus 217 el~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~----------------- 279 (611)
T KOG1173|consen 217 ELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLP----------------- 279 (611)
T ss_pred HhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcc-----------------
Confidence 111 0112 45778888999999999999999999999999996521
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccC
Q 002199 579 VTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNG 658 (954)
Q Consensus 579 ~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~ 658 (954)
.+.-....++..|+.. +-+..-.+.+...|..+..|+..|..|+..|++.+|..+|.++..++|...+
T Consensus 280 --~~~~~ia~l~el~~~n---~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp------- 347 (611)
T KOG1173|consen 280 --CLPLHIACLYELGKSN---KLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP------- 347 (611)
T ss_pred --hHHHHHHHHHHhcccc---hHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH-------
Confidence 1222233566666655 4455556778889999999999999999999999999999999999987655
Q ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 002199 659 SVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYT 738 (954)
Q Consensus 659 ~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~e 738 (954)
+|...|.+|...++.++|+.+|..|-++.|.... -..-+|..|.+.+.++
T Consensus 348 ----------aWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl--------------------P~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 348 ----------AWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL--------------------PSLYLGMEYMRTNNLK 397 (611)
T ss_pred ----------HHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc--------------------hHHHHHHHHHHhccHH
Confidence 7899999999999999999999999998876643 2334899999999999
Q ss_pred HHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----C---CCHHHHHHHHHHHHHhcCHHH
Q 002199 739 EAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALD----E---NYTKAVSRRAALHEMIRDYTQ 811 (954)
Q Consensus 739 eAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld----P---~~~~al~~lA~ly~~lg~~ee 811 (954)
-|..+|.+|+.+. |.++.++..+|.+.+..+.|.+|+.+|+.++..- + .....+.+||.+|.+++.+++
T Consensus 398 LAe~Ff~~A~ai~----P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 398 LAEKFFKQALAIA----PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHHHHHHHHHhcC----CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 9999999999999 8889999999999999999999999999999432 2 235678999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhhhhccCCCcchhhhhccccCCC-HHHHHH
Q 002199 812 AASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDT-AADIKK 885 (954)
Q Consensus 812 Ai~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~a~k~~~~~dyYkiLgv~~~a~-~~eIkk 885 (954)
|+.+|+++|.+ .|.+...+..++-.+..++.+..+. ..|.+.|.+.|+.. ..++-+
T Consensus 474 AI~~~q~aL~l-------------~~k~~~~~asig~iy~llgnld~Ai-----d~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 474 AIDYYQKALLL-------------SPKDASTHASIGYIYHLLGNLDKAI-----DHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHc-------------CCCchhHHHHHHHHHHHhcChHHHH-----HHHHHHHhcCCccHHHHHHHH
Confidence 99999999999 5666667778888888888777763 34789999998873 344443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-15 Score=164.94 Aligned_cols=304 Identities=12% Similarity=0.024 Sum_probs=247.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVY 529 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~ 529 (954)
..+..+.++-...-+.-+..++-.-...-|.+. .++..+|.|++..|++.+|+-.|+++.-++|....+.
T Consensus 200 wika~Aq~~~~~hs~a~~t~l~le~~~~lr~Nv----------hLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 200 WIKALAQMFNFKHSDASQTFLMLHDNTTLRCNE----------HLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred HHHHHHHHHhcccchhhhHHHHHHhhccCCccH----------HHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 334444444444455556666666677777775 7888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Q 002199 530 MRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEAL 609 (954)
Q Consensus 530 ~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL 609 (954)
-..|.++...|++++--......+..... ....|+-.+..++..+++. .|+.+..++|
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-------------------ta~~wfV~~~~l~~~K~~~---rAL~~~eK~I 327 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKVKY-------------------TASHWFVHAQLLYDEKKFE---RALNFVEKCI 327 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhhhc-------------------chhhhhhhhhhhhhhhhHH---HHHHHHHHHh
Confidence 88888888888888776666666654321 2456777777888888888 8999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 002199 610 SISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDL 689 (954)
Q Consensus 610 ~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~ 689 (954)
..+|.+...+.+.|.++..+++.++|+-.|+.++.+.|.... .|..|-.+|+..|.+.+|...
T Consensus 328 ~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~-----------------~Y~GL~hsYLA~~~~kEA~~~ 390 (564)
T KOG1174|consen 328 DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE-----------------IYRGLFHSYLAQKRFKEANAL 390 (564)
T ss_pred ccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH-----------------HHHHHHHHHHhhchHHHHHHH
Confidence 999999999999999999999999999999999999987644 677888999999999999999
Q ss_pred HHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHH
Q 002199 690 LQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAG-N-EAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAA 767 (954)
Q Consensus 690 l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG-~-~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~ 767 (954)
-+.++...|.+.. .+...| . .++.-.--++|...|+++|.++ |....+-..+|.
T Consensus 391 An~~~~~~~~sA~--------------------~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~----P~Y~~AV~~~AE 446 (564)
T KOG1174|consen 391 ANWTIRLFQNSAR--------------------SLTLFGTLVLFPDPRMREKAKKFAEKSLKIN----PIYTPAVNLIAE 446 (564)
T ss_pred HHHHHHHhhcchh--------------------hhhhhcceeeccCchhHHHHHHHHHhhhccC----CccHHHHHHHHH
Confidence 9998887766543 222233 2 2233345688999999999999 778888889999
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 768 ALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 768 ~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
++...|.+.++|..++++|...|+ ...+..||.++...+.+++|..+|..||.++|++.
T Consensus 447 L~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 999999999999999999998876 45788999999999999999999999999977654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.3e-17 Score=169.53 Aligned_cols=267 Identities=21% Similarity=0.162 Sum_probs=230.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC---C-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHH
Q 002199 501 TRISLGRMREALEDCMMAATVD---P-------NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAA 570 (954)
Q Consensus 501 ~y~~lg~~eeAl~~~~kALel~---P-------~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~ 570 (954)
+++...+...|...+...++++ | .+.+-...+|.||+.+|-+.+|...++.+|+..|.
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~------------ 255 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH------------ 255 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc------------
Confidence 4556677777777776666653 1 12334457899999999999999999999998774
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhh
Q 002199 571 DGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNF 650 (954)
Q Consensus 571 ~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~ 650 (954)
++.++.++..|....+.. .|+..|.+.+...|.+..++...|+++..++++++|+++|+.++++.|.+.
T Consensus 256 --------~dTfllLskvY~ridQP~---~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nv 324 (478)
T KOG1129|consen 256 --------PDTFLLLSKVYQRIDQPE---RALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINV 324 (478)
T ss_pred --------hhHHHHHHHHHHHhccHH---HHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccc
Confidence 466777788887777777 899999999999999999999999999999999999999999999999886
Q ss_pred hhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 651 ASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE 730 (954)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~ 730 (954)
+ +...+|.-|+.-++++-|+.+|++.+++--.+++ .+.++|.+
T Consensus 325 E-----------------aiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe--------------------Lf~NigLC 367 (478)
T KOG1129|consen 325 E-----------------AIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE--------------------LFCNIGLC 367 (478)
T ss_pred e-----------------eeeeeeeccccCCChHHHHHHHHHHHHhcCCChH--------------------HHhhHHHH
Confidence 6 2334677899999999999999999998665544 57789999
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 002199 731 AFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYT 810 (954)
Q Consensus 731 ~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~e 810 (954)
.+-.++++-++..|++|+.... .+...+++|+|+|.+....|++.-|.++|+.||..+|++.+++.+||.+-.+.|+.+
T Consensus 368 C~yaqQ~D~~L~sf~RAlstat-~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 368 CLYAQQIDLVLPSFQRALSTAT-QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDIL 446 (478)
T ss_pred HHhhcchhhhHHHHHHHHhhcc-CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchH
Confidence 9999999999999999998863 235678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHH
Q 002199 811 QAASDLQRLVSILENQSA 828 (954)
Q Consensus 811 eAi~~~ekAL~l~p~~~~ 828 (954)
+|..+|+.|-.+.|...+
T Consensus 447 ~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 447 GARSLLNAAKSVMPDMAE 464 (478)
T ss_pred HHHHHHHHhhhhCccccc
Confidence 999999999999776543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.4e-15 Score=174.42 Aligned_cols=317 Identities=14% Similarity=0.061 Sum_probs=241.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHH
Q 002199 492 VLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAAD 571 (954)
Q Consensus 492 a~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~ 571 (954)
+..++..|..++..|++++|+..+..+|..+|.+..+|+.||.||.++|+.++|+..+-.|-.++|.+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d------------ 206 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKD------------ 206 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC------------
Confidence 46677888888999999999999999999999999999999999999999999999999999999976
Q ss_pred HHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhh
Q 002199 572 GLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFA 651 (954)
Q Consensus 572 ~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~ 651 (954)
...|...+....+++.+. +|.-+|.+||+.+|.+..+++.++.+|.++|++..|+..|.+++++.|..
T Consensus 207 -------~e~W~~ladls~~~~~i~---qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~-- 274 (895)
T KOG2076|consen 207 -------YELWKRLADLSEQLGNIN---QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV-- 274 (895)
T ss_pred -------hHHHHHHHHHHHhcccHH---HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch--
Confidence 455777888888888888 89999999999999999999999999999999999999999999999822
Q ss_pred hhhhccCcchhhHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcch-hhHHHHHHHHHHHHHHH---------
Q 002199 652 SVLADNGSVTYSLARLWR-WRLISKSYFCIGKLEVALDLLQKLEQVGSISDRY-GSEILESSMSLAGTVRA--------- 720 (954)
Q Consensus 652 ~~~~~~~~~~~~~~~l~a-~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~-~~~~l~~~~~l~~~~~~--------- 720 (954)
.+.++.. ....+..+...++-+.|++.++.++.....-... ...++..+.-.......
T Consensus 275 -----------d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~ 343 (895)
T KOG2076|consen 275 -----------DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDR 343 (895)
T ss_pred -----------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHh
Confidence 1111111 2234777888888899999999988722111100 01111111100000000
Q ss_pred ----------------------------------HHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHH
Q 002199 721 ----------------------------------LLH-HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNR 765 (954)
Q Consensus 721 ----------------------------------~~~-~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~l 765 (954)
+.. ...++.+.++..+..+++..+..--... ....+..|+.+
T Consensus 344 ~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~---~~d~~dL~~d~ 420 (895)
T KOG2076|consen 344 NRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW---VSDDVDLYLDL 420 (895)
T ss_pred ccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC---hhhhHHHHHHH
Confidence 111 2334444555556666665553332222 25678899999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhh
Q 002199 766 AAALQALGQIADAIADCSLAMALDEN-YTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSR 844 (954)
Q Consensus 766 A~~y~~lg~~eeAi~~~ekAL~ldP~-~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~ 844 (954)
+.+|...|+|.+|+.+|..++...+. +...|+.+|.||..+|.+++|+++|+++|.+.| ++-.++-
T Consensus 421 a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-------------~~~D~Ri 487 (895)
T KOG2076|consen 421 ADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP-------------DNLDARI 487 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-------------Cchhhhh
Confidence 99999999999999999999887654 467899999999999999999999999999954 4555556
Q ss_pred hhHHHHHhhhhhhhh
Q 002199 845 DLRQACRHLSSMEED 859 (954)
Q Consensus 845 ~L~~a~~~L~~~e~a 859 (954)
.|..++++++..+++
T Consensus 488 ~Lasl~~~~g~~Eka 502 (895)
T KOG2076|consen 488 TLASLYQQLGNHEKA 502 (895)
T ss_pred hHHHHHHhcCCHHHH
Confidence 777777777776654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-15 Score=168.51 Aligned_cols=362 Identities=16% Similarity=0.134 Sum_probs=259.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHH
Q 002199 494 CYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGL 573 (954)
Q Consensus 494 ~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l 573 (954)
-+-..|.+.+..|+|+.|+.+|..+|.++|.+.-.|-++..+|..+|+|++|+..-.+.+++.|+.
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w-------------- 69 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW-------------- 69 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch--------------
Confidence 345678888999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----------------------
Q 002199 574 QKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRK---------------------- 631 (954)
Q Consensus 574 ~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~---------------------- 631 (954)
...|..++..++..|+|+ +|+..|.+.|+.+|++..++..|+.++.....
T Consensus 70 -----~kgy~r~Gaa~~~lg~~~---eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~ 141 (539)
T KOG0548|consen 70 -----AKGYSRKGAALFGLGDYE---EAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNY 141 (539)
T ss_pred -----hhHHHHhHHHHHhcccHH---HHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhh
Confidence 455778899999999999 88999999999999999999999988833210
Q ss_pred --HHHHHHHHHHhchhhhhhhhhhhhcc---------------------------------------Ccchh------hH
Q 002199 632 --YEEAIQLCEHTLPVAEKNFASVLADN---------------------------------------GSVTY------SL 664 (954)
Q Consensus 632 --~eeAi~~~ekaL~l~p~~~~~~~~~~---------------------------------------~~~~~------~~ 664 (954)
.+.+.....+.++.+|.+......+. ..+.. ..
T Consensus 142 ~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k 221 (539)
T KOG0548|consen 142 SLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVK 221 (539)
T ss_pred hhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHH
Confidence 11222222233333333211111000 00000 11
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHH--------------------HHHHHHHHHHH-HHHHH
Q 002199 665 ARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEI--------------------LESSMSLAGTV-RALLH 723 (954)
Q Consensus 665 ~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~--------------------l~~~~~l~~~~-~~~~~ 723 (954)
......-.+|...+...+++.|+++|.+++.++ .+....... ++.-....... .....
T Consensus 222 ~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~ 300 (539)
T KOG0548|consen 222 EKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKA 300 (539)
T ss_pred HhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHH
Confidence 122345678999999999999999999999988 432222100 00000000000 11223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccC----------------------CchhhHHHHHHHHHHHHHhcCHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIE----------------------SRPFAAICFCNRAAALQALGQIADAIAD 781 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~----------------------~~p~~a~~~~~lA~~y~~lg~~eeAi~~ 781 (954)
+..+|..|...++++.|+.+|.+++.-... ..|..+.-....|..++..|+|..|+..
T Consensus 301 ~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 301 LARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred HHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence 334788999999999999999998864211 1244555666779999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhhhhc
Q 002199 782 CSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEEDAK 861 (954)
Q Consensus 782 ~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~a~k 861 (954)
|.+||..+|+++.+|.++|.||..++.+..|+.+.+.+++++|+... .+..-+.++..+.+...+.
T Consensus 381 YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~k-------------gy~RKg~al~~mk~ydkAl- 446 (539)
T KOG0548|consen 381 YTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIK-------------AYLRKGAALRAMKEYDKAL- 446 (539)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHH-------------HHHHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999999999999999999999665543 3333355666665555553
Q ss_pred cCCCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCC
Q 002199 862 KGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDK 898 (954)
Q Consensus 862 ~~~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK 898 (954)
..|++.|.+. ....++...|++.....+-|.
T Consensus 447 ----eay~eale~d--p~~~e~~~~~~rc~~a~~~~~ 477 (539)
T KOG0548|consen 447 ----EAYQEALELD--PSNAEAIDGYRRCVEAQRGDE 477 (539)
T ss_pred ----HHHHHHHhcC--chhHHHHHHHHHHHHHhhcCC
Confidence 3477777665 455667777777666543333
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-15 Score=163.05 Aligned_cols=287 Identities=13% Similarity=0.040 Sum_probs=247.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHH
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG--RMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg--~~eeAl~~~~kALel~P~~~~ 527 (954)
.-...+..++++|+++.|++.+.-.-..+.... ..+-.++..+++.+| ++..|-++...|+.++.-++.
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~---------saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~ 491 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTA---------SAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAA 491 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhh---------HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHH
Confidence 345677889999999999999876655555443 356677777777754 789999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINE 607 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~k 607 (954)
++.+.|.+-+..|++++|.+.|+.+|..+... .+.+++.+..+-.+|+.+ +|+++|-+
T Consensus 492 a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-------------------~ealfniglt~e~~~~ld---eald~f~k 549 (840)
T KOG2003|consen 492 ALTNKGNIAFANGDLDKAAEFYKEALNNDASC-------------------TEALFNIGLTAEALGNLD---EALDCFLK 549 (840)
T ss_pred HhhcCCceeeecCcHHHHHHHHHHHHcCchHH-------------------HHHHHHhcccHHHhcCHH---HHHHHHHH
Confidence 99999999999999999999999999976654 567888888888999999 78888888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 002199 608 ALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVAL 687 (954)
Q Consensus 608 aL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl 687 (954)
...+--++.++++.+|.+|..+.+..+||++|.++..+-|.++. ++..||.+|-+.|+-.+|.
T Consensus 550 lh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~-----------------ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 550 LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPA-----------------ILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHH-----------------HHHHHHHHhhcccchhhhh
Confidence 77777789999999999999999999999999999999998865 5678999999999999999
Q ss_pred HHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHH
Q 002199 688 DLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAA 767 (954)
Q Consensus 688 ~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~ 767 (954)
.++-...+..|.+.. ..--+|..|+...-+++||.+|++|.-+. |........+|.
T Consensus 613 q~~ydsyryfp~nie--------------------~iewl~ayyidtqf~ekai~y~ekaaliq----p~~~kwqlmias 668 (840)
T KOG2003|consen 613 QCHYDSYRYFPCNIE--------------------TIEWLAAYYIDTQFSEKAINYFEKAALIQ----PNQSKWQLMIAS 668 (840)
T ss_pred hhhhhcccccCcchH--------------------HHHHHHHHHHhhHHHHHHHHHHHHHHhcC----ccHHHHHHHHHH
Confidence 999888887776633 12226777888888999999999998888 777778888999
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 002199 768 ALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRD 808 (954)
Q Consensus 768 ~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~ 808 (954)
|+.+.|+|.+|...|...-..-|.+.+.+..|.++.-.+|-
T Consensus 669 c~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999988877774
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-15 Score=167.14 Aligned_cols=209 Identities=13% Similarity=0.066 Sum_probs=161.3
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..+..+..|+.+|..+...|++++|+..|+++++++|+++ .+|+++|.++..+|++++|+..|+++++++
T Consensus 59 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~----------~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 128 (296)
T PRK11189 59 TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA----------DAYNYLGIYLTQAGNFDAAYEAFDSVLELD 128 (296)
T ss_pred CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3456688999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
|++..++..+|.++...|++++|++.|+++++++|++... ..+. ......++++ +|+
T Consensus 129 P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~-----------------~~~~---~l~~~~~~~~---~A~ 185 (296)
T PRK11189 129 PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR-----------------ALWL---YLAESKLDPK---QAK 185 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-----------------HHHH---HHHHccCCHH---HHH
Confidence 9999999999999999999999999999999999976210 0011 1122345566 777
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH--HHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc
Q 002199 603 ERINEALSISSCSEKLLEMKADALYMLRKYEEA--IQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI 680 (954)
Q Consensus 603 ~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeA--i~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l 680 (954)
..+.+++...+.. .+. .+.+++.+|++.++ +..+.+.+...+...+ ....+|+.+|.+|..+
T Consensus 186 ~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~-------------~~~ea~~~Lg~~~~~~ 249 (296)
T PRK11189 186 ENLKQRYEKLDKE--QWG-WNIVEFYLGKISEETLMERLKAGATDNTELAE-------------RLCETYFYLAKYYLSL 249 (296)
T ss_pred HHHHHHHhhCCcc--ccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHH-------------HHHHHHHHHHHHHHHC
Confidence 7776666443222 122 35666667776443 4334433333222110 1123789999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCC
Q 002199 681 GKLEVALDLLQKLEQVGSIS 700 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~p~~ 700 (954)
|++++|+.+|++++.++|.+
T Consensus 250 g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 250 GDLDEAAALFKLALANNVYN 269 (296)
T ss_pred CCHHHHHHHHHHHHHhCCch
Confidence 99999999999999998744
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-15 Score=159.03 Aligned_cols=205 Identities=17% Similarity=0.140 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
...+..+..+|..++..|++++|+..|++++..+|.+. .++..+|.++..+|++++|+..+++++++.|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 97 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY----------LAYLALALYYQQLGELEKAEDSFRRALTLNPN 97 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34578889999999999999999999999999999986 89999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHH
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALER 604 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~ 604 (954)
+..++..+|.++...|++++|+..|++++...+.. .....+..++..+...|+++ +|+..
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~g~~~---~A~~~ 157 (234)
T TIGR02521 98 NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP-----------------QPARSLENAGLCALKAGDFD---KAEKY 157 (234)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc-----------------cchHHHHHHHHHHHHcCCHH---HHHHH
Confidence 99999999999999999999999999998753210 01234566788888999999 78889
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHH
Q 002199 605 INEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLE 684 (954)
Q Consensus 605 l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~e 684 (954)
+.+++...|.++.++..+|.++...|++++|+..+++++...|.+.. .+..++.++...|+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~ 220 (234)
T TIGR02521 158 LTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAE-----------------SLWLGIRIARALGDVA 220 (234)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999998654422 4456788999999999
Q ss_pred HHHHHHHHHHhh
Q 002199 685 VALDLLQKLEQV 696 (954)
Q Consensus 685 eAl~~l~kal~l 696 (954)
+|..+.+.+...
T Consensus 221 ~a~~~~~~~~~~ 232 (234)
T TIGR02521 221 AAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhh
Confidence 999988877654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.4e-16 Score=162.53 Aligned_cols=297 Identities=14% Similarity=0.078 Sum_probs=248.1
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLV-LCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la-~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
+.|....++++ ..++...+...|-......+++.-.-+.. ...-.+. +.-..+|.||+.+|-+.+|...++.+|+.
T Consensus 176 ~~p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~-~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q 252 (478)
T KOG1129|consen 176 ERPTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSG-STGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ 252 (478)
T ss_pred cChHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccc-cccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc
Confidence 44666666665 35777888888887777666654221100 0001111 23346899999999999999999999998
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHH
Q 002199 522 DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSA 601 (954)
Q Consensus 522 ~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eA 601 (954)
.| .++.+..|+.+|....+...|+..|...++..|.+ +.-....++.+...++++ +|
T Consensus 253 ~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~-------------------VT~l~g~ARi~eam~~~~---~a 309 (478)
T KOG1129|consen 253 FP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFD-------------------VTYLLGQARIHEAMEQQE---DA 309 (478)
T ss_pred CC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCch-------------------hhhhhhhHHHHHHHHhHH---HH
Confidence 76 56889999999999999999999999999999975 444566777777778888 89
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcC
Q 002199 602 LERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIG 681 (954)
Q Consensus 602 L~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG 681 (954)
+++|..+++.+|.+.++...+|.-|+.-++.+-|+.+|+++|++.-.+.+ .+.++|.+.+..+
T Consensus 310 ~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe-----------------Lf~NigLCC~yaq 372 (478)
T KOG1129|consen 310 LQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE-----------------LFCNIGLCCLYAQ 372 (478)
T ss_pred HHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH-----------------HHhhHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999876655 5778999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHH
Q 002199 682 KLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAIC 761 (954)
Q Consensus 682 ~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~ 761 (954)
+++-++..|++++........ .+..|+++|.+....|++.-|..+|+-+|..+ +++..+
T Consensus 373 Q~D~~L~sf~RAlstat~~~~-----------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d----~~h~ea 431 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQ-----------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSD----AQHGEA 431 (478)
T ss_pred chhhhHHHHHHHHhhccCcch-----------------hhhhhhccceeEEeccchHHHHHHHHHHhccC----cchHHH
Confidence 999999999999987654432 35789999999999999999999999999988 889999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 762 FCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 762 ~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
+.|||.+..+.|+.++|..+++.|-.+.|.-.+..++++.+-
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFMS 473 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEEe
Confidence 999999999999999999999999999999888777776543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.4e-15 Score=155.77 Aligned_cols=203 Identities=18% Similarity=0.078 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccC
Q 002199 579 VTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNG 658 (954)
Q Consensus 579 ~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~ 658 (954)
...++.++..++..++++ +|+..+.+++...|.+..++..+|.++..+|++++|+..+++++...|.+..
T Consensus 31 ~~~~~~la~~~~~~~~~~---~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~------- 100 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLE---VAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD------- 100 (234)
T ss_pred HHHHHHHHHHHHHCCCHH---HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-------
Confidence 456778889999999999 8889999999999999999999999999999999999999999999887643
Q ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 002199 659 SVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYT 738 (954)
Q Consensus 659 ~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~e 738 (954)
.+..+|.++...|++++|+..|++++...+... ....+..+|.++...|+++
T Consensus 101 ----------~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------------~~~~~~~l~~~~~~~g~~~ 152 (234)
T TIGR02521 101 ----------VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ------------------PARSLENAGLCALKAGDFD 152 (234)
T ss_pred ----------HHHHHHHHHHHcccHHHHHHHHHHHHhcccccc------------------chHHHHHHHHHHHHcCCHH
Confidence 577889999999999999999999987432111 1234556899999999999
Q ss_pred HHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 739 EAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQR 818 (954)
Q Consensus 739 eAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ek 818 (954)
+|+..|.+++... |....++..+|.++...|++++|+..+++++.+.|.++..+..++.++...|++++|..+.+.
T Consensus 153 ~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 153 KAEKYLTRALQID----PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHHHhC----cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999998 566788999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHh
Q 002199 819 LVSIL 823 (954)
Q Consensus 819 AL~l~ 823 (954)
+..+.
T Consensus 229 ~~~~~ 233 (234)
T TIGR02521 229 LQKLF 233 (234)
T ss_pred HHhhC
Confidence 77664
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-16 Score=176.09 Aligned_cols=242 Identities=14% Similarity=0.135 Sum_probs=151.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHH
Q 002199 496 SNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQK 575 (954)
Q Consensus 496 ~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~ 575 (954)
+..|..+++.|+..+|+-.|+.|+..+|.++.+|..||.++...++-..|+..+++|++++|++
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~N---------------- 352 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTN---------------- 352 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCcc----------------
Confidence 5789999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhh
Q 002199 576 AQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLA 655 (954)
Q Consensus 576 ~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~ 655 (954)
...++.+|..|...+.-. +|+.++.+.|...|....+... . ..+++.. +..
T Consensus 353 ---leaLmaLAVSytNeg~q~---~Al~~L~~Wi~~~p~y~~l~~a--~---~~~~~~~------------~~s------ 403 (579)
T KOG1125|consen 353 ---LEALMALAVSYTNEGLQN---QALKMLDKWIRNKPKYVHLVSA--G---ENEDFEN------------TKS------ 403 (579)
T ss_pred ---HHHHHHHHHHHhhhhhHH---HHHHHHHHHHHhCccchhcccc--C---ccccccC------------CcC------
Confidence 556677777777766555 6777777777666533211100 0 0000000 000
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002199 656 DNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSG 735 (954)
Q Consensus 656 ~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g 735 (954)
+. ....+..-.++|-.+....|.... ...+..||.+|...+
T Consensus 404 --------~~-------------~~~~l~~i~~~fLeaa~~~~~~~D------------------pdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 404 --------FL-------------DSSHLAHIQELFLEAARQLPTKID------------------PDVQSGLGVLYNLSG 444 (579)
T ss_pred --------CC-------------CHHHHHHHHHHHHHHHHhCCCCCC------------------hhHHhhhHHHHhcch
Confidence 00 000001111222333333332110 112334566666666
Q ss_pred CHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 002199 736 RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASD 815 (954)
Q Consensus 736 ~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~ 815 (954)
+|++|+.+|+.||... |.+..+|+.||..+..-.+.++||..|.+||++.|.++.++|+||..++.+|.|++|+.+
T Consensus 445 efdraiDcf~~AL~v~----Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVK----PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHHHHHHHHhcC----CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 6666666666666665 556666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhhh
Q 002199 816 LQRLVSILEN 825 (954)
Q Consensus 816 ~ekAL~l~p~ 825 (954)
|-.||.+.++
T Consensus 521 lL~AL~mq~k 530 (579)
T KOG1125|consen 521 LLEALSMQRK 530 (579)
T ss_pred HHHHHHhhhc
Confidence 6666666554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.7e-15 Score=171.04 Aligned_cols=215 Identities=20% Similarity=0.130 Sum_probs=164.3
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhc
Q 002199 585 CSGKLLEQKTSEAASSALERINEALSI--------SSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLAD 656 (954)
Q Consensus 585 ~a~~ll~~g~~~~a~eAL~~l~kaL~~--------~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~ 656 (954)
.|..|...+++. +|+..|++++.+ +|....++.+||.+|...|++++|..+|++++++.......
T Consensus 247 ~a~~y~~~~k~~---eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~---- 319 (508)
T KOG1840|consen 247 LALVYRSLGKYD---EAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGA---- 319 (508)
T ss_pred HHHHHHHhccHH---HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhcc----
Confidence 444455555555 444444444433 35557789999999999999999999999999997752110
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 002199 657 NGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGR 736 (954)
Q Consensus 657 ~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~ 736 (954)
...... -.+..++.++...+++++|+.+|++++++.-..+.. ..+.....+.++|..|+..|+
T Consensus 320 ---~~~~v~--~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~------------~~~~~a~~~~nl~~l~~~~gk 382 (508)
T KOG1840|consen 320 ---SHPEVA--AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE------------DNVNLAKIYANLAELYLKMGK 382 (508)
T ss_pred ---ChHHHH--HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc------------cchHHHHHHHHHHHHHHHhcc
Confidence 011111 256778999999999999999999998864321111 122334567789999999999
Q ss_pred HHHHHHHHHHHHhhcc----CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHH
Q 002199 737 YTEAVEHYTVALSTNI----ESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL-------DENYTKAVSRRAALHEM 805 (954)
Q Consensus 737 ~eeAi~~y~kAL~l~~----~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l-------dP~~~~al~~lA~ly~~ 805 (954)
|.+|.++|++||.+.. ..++.....+.++|..|..++++.+|...|..++.+ .|+....|.+||.+|..
T Consensus 383 ~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~ 462 (508)
T KOG1840|consen 383 YKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRA 462 (508)
T ss_pred hhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 9999999999998852 234566788999999999999999999999998876 35667889999999999
Q ss_pred hcCHHHHHHHHHHHHHHh
Q 002199 806 IRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 806 lg~~eeAi~~~ekAL~l~ 823 (954)
+|++++|+++.++++...
T Consensus 463 ~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 463 QGNYEAAEELEEKVLNAR 480 (508)
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 999999999999998773
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-13 Score=156.13 Aligned_cols=330 Identities=15% Similarity=0.055 Sum_probs=263.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
.+.-..|..-+..+.+.+-++-|+..|..+|+..|... .+|...+..--..|..+.-...+++|+..-|.
T Consensus 513 ed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~----------slWlra~~~ek~hgt~Esl~Allqkav~~~pk 582 (913)
T KOG0495|consen 513 EDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKK----------SLWLRAAMFEKSHGTRESLEALLQKAVEQCPK 582 (913)
T ss_pred chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchh----------HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc
Confidence 34556788888888999999999999999999999987 78888888888889999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHH----------HHHHHHHHHh----HHHHHHHHHHHH
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE----------AADGLQKAQK----VTEYINCSGKLL 590 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~e----------a~~~l~~~~~----~~~~l~~a~~ll 590 (954)
....|+..+..+...|+...|+..+..+++.+|.+......... +...+.++.. ...|+..+....
T Consensus 583 ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er 662 (913)
T KOG0495|consen 583 AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLER 662 (913)
T ss_pred chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHH
Confidence 99999999999999999999999999999999975332211111 1111111111 223444444444
Q ss_pred HhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHH
Q 002199 591 EQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRW 670 (954)
Q Consensus 591 ~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~ 670 (954)
.++..+ +|+..++++|+..|....+|+++|+++.++++.+.|...|..-++..|.... .|
T Consensus 663 ~ld~~e---eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip-----------------LW 722 (913)
T KOG0495|consen 663 YLDNVE---EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP-----------------LW 722 (913)
T ss_pred HhhhHH---HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch-----------------HH
Confidence 555555 8999999999999999999999999999999999999999999999998765 68
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 671 RLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALST 750 (954)
Q Consensus 671 ~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l 750 (954)
..|+.+--..|....|...++++.-.+|.+.... ...-..-++.|..+.|.....+||+-
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lw--------------------le~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLW--------------------LESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhH--------------------HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8899999999999999999999999998876533 33344445667777777777777766
Q ss_pred ccCCc--------------------------hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002199 751 NIESR--------------------------PFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHE 804 (954)
Q Consensus 751 ~~~~~--------------------------p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~ 804 (954)
.|.+. ..++.+++..|.+++...++++|..+|.+++.++|++.++|...=..+.
T Consensus 783 cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel 862 (913)
T KOG0495|consen 783 CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFEL 862 (913)
T ss_pred CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHH
Confidence 54321 3456677788888888888999999999999999988888888888888
Q ss_pred HhcCHHHHHHHHHHHHHHhh
Q 002199 805 MIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 805 ~lg~~eeAi~~~ekAL~l~p 824 (954)
..|.-++-.+.|.+.....|
T Consensus 863 ~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 863 RHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HhCCHHHHHHHHHHHhccCC
Confidence 88888888888888877743
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-14 Score=165.84 Aligned_cols=317 Identities=19% Similarity=0.115 Sum_probs=249.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCcHHH
Q 002199 460 KNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG-----------RMREALEDCMMAATVDPNFLKV 528 (954)
Q Consensus 460 ~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg-----------~~eeAl~~~~kALel~P~~~~a 528 (954)
+.+.+++++++-+++|...... .......+|..+|.+|-.+- ...++++.+++|++++|+++.+
T Consensus 406 ~l~~~eegldYA~kai~~~~~~-----~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 406 RLKLVEEGLDYAQKAISLLGGQ-----RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred chhhhhhHHHHHHHHHHHhhhh-----hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 4577778888888888754221 12223577888888886542 3578999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Q 002199 529 YMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEA 608 (954)
Q Consensus 529 ~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~ka 608 (954)
.+.++.-|..+++...|+.+.+++|++++.+ .+..|.-++..+-..+++. .|+...+.+
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~------------------~~~~whLLALvlSa~kr~~---~Al~vvd~a 539 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGD------------------SAKAWHLLALVLSAQKRLK---EALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc------------------cHHHHHHHHHHHhhhhhhH---HHHHHHHHH
Confidence 9999999999999999999999999997654 2556777788888888888 788888888
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhh-------------------ccCcc---------
Q 002199 609 LSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLA-------------------DNGSV--------- 660 (954)
Q Consensus 609 L~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~-------------------~~~~~--------- 660 (954)
+...|.+..+......+-...++.++|+..+...|.+-...+..... ....+
T Consensus 540 l~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 540 LEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred HHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 88888877777777777777888888888777766554311100000 00000
Q ss_pred ------------------------hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHH
Q 002199 661 ------------------------TYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAG 716 (954)
Q Consensus 661 ------------------------~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~ 716 (954)
..-+.....|...+..+...+..++|..++.++-.++|..
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~---------------- 683 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS---------------- 683 (799)
T ss_pred HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh----------------
Confidence 0011122356778888999999999999999998876543
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHH--HHHHHHHhCCCCHH
Q 002199 717 TVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIA--DCSLAMALDENYTK 794 (954)
Q Consensus 717 ~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~--~~ekAL~ldP~~~~ 794 (954)
...|+..|..+...|++.+|.+.|..|+.++ |....+...+|.++...|+-.-|.. .+..+++++|.+++
T Consensus 684 ----~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld----P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~e 755 (799)
T KOG4162|consen 684 ----ASVYYLRGLLLEVKGQLEEAKEAFLVALALD----PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHE 755 (799)
T ss_pred ----HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC----CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH
Confidence 3467778999999999999999999999999 7777888899999999998777777 99999999999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 795 AVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
+|+.+|.++.++|+.++|..+|+.++++.+.+
T Consensus 756 aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 756 AWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999996553
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.4e-15 Score=171.23 Aligned_cols=278 Identities=18% Similarity=0.095 Sum_probs=217.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 440 ~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
.....|....++..+|..|..+|+|+.|+..+++|++..-+.. +.....+......+|.+|+.+++|.+|+..|++||
T Consensus 191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~--G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL 268 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTS--GLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL 268 (508)
T ss_pred cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcc--CccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4556788888888899999999999999999999999843322 22233345666779999999999999999999999
Q ss_pred hc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002199 520 TV--------DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLE 591 (954)
Q Consensus 520 el--------~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~ 591 (954)
.+ +|..+.++.+||.+|...|+|++|..++++|+++...
T Consensus 269 ~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~--------------------------------- 315 (508)
T KOG1840|consen 269 TIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK--------------------------------- 315 (508)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH---------------------------------
Confidence 86 4666889999999999999999999999999886221
Q ss_pred hcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHH
Q 002199 592 QKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWR 671 (954)
Q Consensus 592 ~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~ 671 (954)
......|.-...+..++.++..++++++|+.++++++++..+-+.. ....... .+.
T Consensus 316 ---------------~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~-------~~~~~a~--~~~ 371 (508)
T KOG1840|consen 316 ---------------LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE-------DNVNLAK--IYA 371 (508)
T ss_pred ---------------hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc-------cchHHHH--HHH
Confidence 0011223345567888999999999999999999999886532211 0112222 577
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 672 LISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 672 ~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~ 751 (954)
.||.+|+..|+|.+|.++|++|+.+....... ........+.++|..+.+.+++.+|...|.+++.+.
T Consensus 372 nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~------------~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 372 NLAELYLKMGKYKEAEELYKKAIQILRELLGK------------KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhcccC------------cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 89999999999999999999999864222110 011223456678999999999999999999998874
Q ss_pred c---CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 752 I---ESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 752 ~---~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
. .+.|.....|.|||.+|..+|++++|+++.++++..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3 234778889999999999999999999999999854
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-14 Score=166.74 Aligned_cols=281 Identities=10% Similarity=-0.008 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
......|...+..|+++.|.+.+.++.+..|+....+...|.++..+|+++.|..+|.++++..|+..
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~------------ 152 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN------------ 152 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc------------
Confidence 44567788889999999999999999999999999999999999999999999999999999888641
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~ 652 (954)
+......+..++..++++ .|+..++..++..|.++.++..++.++...|++++|+..+.+.++....+...
T Consensus 153 ------l~~~~~~a~l~l~~~~~~---~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~ 223 (409)
T TIGR00540 153 ------ILVEIARTRILLAQNELH---AARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEE 223 (409)
T ss_pred ------hHHHHHHHHHHHHCCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHH
Confidence 112334577888899999 78888999999999999999999999999999999999999998764322110
Q ss_pred hhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 653 VLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAF 732 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~ 732 (954)
+.. .......-++..+..+++...+.++....|.... .....+..++..+.
T Consensus 224 -----------~~~--l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~----------------~~~~l~~~~a~~l~ 274 (409)
T TIGR00540 224 -----------FAD--LEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRR----------------HNIALKIALAEHLI 274 (409)
T ss_pred -----------HHH--HHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHh----------------CCHHHHHHHHHHHH
Confidence 000 0111122223445555566677777776653211 11234556889999
Q ss_pred HcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCHH
Q 002199 733 KSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYT--KAVSRRAALHEMIRDYT 810 (954)
Q Consensus 733 ~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~--~al~~lA~ly~~lg~~e 810 (954)
..|++++|+..++++++..|++...... ..+.......++...++..++++++.+|+++ ..+..+|.+++.+|+|+
T Consensus 275 ~~g~~~~A~~~l~~~l~~~pd~~~~~~~--~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~ 352 (409)
T TIGR00540 275 DCDDHDSAQEIIFDGLKKLGDDRAISLP--LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFI 352 (409)
T ss_pred HCCChHHHHHHHHHHHhhCCCcccchhH--HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHH
Confidence 9999999999999999998654321111 2233344456889999999999999999999 88999999999999999
Q ss_pred HHHHHHH--HHHHHhhh
Q 002199 811 QAASDLQ--RLVSILEN 825 (954)
Q Consensus 811 eAi~~~e--kAL~l~p~ 825 (954)
+|.++|+ +++++.|+
T Consensus 353 ~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 353 EAADAFKNVAACKEQLD 369 (409)
T ss_pred HHHHHHHHhHHhhcCCC
Confidence 9999999 56667443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-13 Score=158.03 Aligned_cols=358 Identities=16% Similarity=0.126 Sum_probs=274.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD-- 522 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~-- 522 (954)
..++..|..+...+..-|+|..+.++|++++...-... ..|+.++.+|...|....|+..++..+.+.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~----------e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEH----------ERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhH----------HHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 35677788888888999999999999999999877765 899999999999999999999999999998
Q ss_pred CCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHhcCh--
Q 002199 523 PNFLKVYMRAAK-CHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKL----LEQKTS-- 595 (954)
Q Consensus 523 P~~~~a~~~LA~-iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~l----l~~g~~-- 595 (954)
|.++..++..+. |+...+.+++++.+..+++......... + ....++.++..| ......
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~----------l----~~~~~l~lGi~y~~~A~~a~~~se 455 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSH----------L----KPRGYLFLGIAYGFQARQANLKSE 455 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhh----------h----hhhHHHHHHHHHHhHhhcCCChHH
Confidence 777766666554 5567899999999999999843211000 0 011112222211 111111
Q ss_pred --HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHH
Q 002199 596 --EAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLI 673 (954)
Q Consensus 596 --~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~L 673 (954)
.-..++++.++++++.+|.++.+.+.++.-|...++.+.|+...++++.+++.+.. -.|..+
T Consensus 456 R~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~----------------~~whLL 519 (799)
T KOG4162|consen 456 RDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSA----------------KAWHLL 519 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccH----------------HHHHHH
Confidence 01127888999999999999999999999999999999999999999999765532 268889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcchh-------------hHHHHHHHHHHH------------------------
Q 002199 674 SKSYFCIGKLEVALDLLQKLEQVGSISDRYG-------------SEILESSMSLAG------------------------ 716 (954)
Q Consensus 674 g~~y~~lG~~eeAl~~l~kal~l~p~~~~~~-------------~~~l~~~~~l~~------------------------ 716 (954)
+.++...+++.+|+....-++.-.+.+.... -..+..+.....
T Consensus 520 ALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l 599 (799)
T KOG4162|consen 520 ALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGL 599 (799)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccc
Confidence 9999999999999999988887766622110 000000000000
Q ss_pred ----------------------------------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 717 ----------------------------------------------TVRALLHHKSAGNEAFKSGRYTEAVEHYTVALST 750 (954)
Q Consensus 717 ----------------------------------------------~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l 750 (954)
.......|...+..+...+..++|..++.+|-.+
T Consensus 600 ~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~ 679 (799)
T KOG4162|consen 600 HLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI 679 (799)
T ss_pred ccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Confidence 0011223445677888888899999999999888
Q ss_pred ccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHH--HHHHHHHHhhhhHH
Q 002199 751 NIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAAS--DLQRLVSILENQSA 828 (954)
Q Consensus 751 ~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~--~~ekAL~l~p~~~~ 828 (954)
+ |..+.+|+.+|.++...|++.+|...|..|+.++|+++.....+|.++...|+..-|.. .+..++++
T Consensus 680 ~----~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~------ 749 (799)
T KOG4162|consen 680 D----PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL------ 749 (799)
T ss_pred c----hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh------
Confidence 8 88999999999999999999999999999999999999999999999999998887777 99999999
Q ss_pred HHHhhcCCCCcchhhhhhHHHHHhhhhhhhh
Q 002199 829 EKAKQSRSPGRTISSRDLRQACRHLSSMEED 859 (954)
Q Consensus 829 ~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~a 859 (954)
+|....+|..|+...+.++...++
T Consensus 750 -------dp~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 750 -------DPLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred -------CCCCHHHHHHHHHHHHHccchHHH
Confidence 666777788999988887776654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.2e-15 Score=158.48 Aligned_cols=320 Identities=16% Similarity=0.134 Sum_probs=241.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD---- 522 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~---- 522 (954)
.+-.+...|..+++.|++...+..|+.||+.-.++ ...+..+|..+|.+|+.+++|++|+++-..-|.+.
T Consensus 16 SCleLalEGERLck~gdcraGv~ff~aA~qvGTeD------l~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg 89 (639)
T KOG1130|consen 16 SCLELALEGERLCKMGDCRAGVDFFKAALQVGTED------LSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG 89 (639)
T ss_pred HHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchH------HHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc
Confidence 36678889999999999999999999999998776 35678899999999999999999999765444332
Q ss_pred --CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCh-----
Q 002199 523 --PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTS----- 595 (954)
Q Consensus 523 --P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~----- 595 (954)
-..+++--+||..+..+|.|++|+.+..+-|.+.. +.-.+.....++++++..|...|+.
T Consensus 90 dklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~ar-------------eLgDrv~e~RAlYNlgnvYhakGk~~g~~~ 156 (639)
T KOG1130|consen 90 DKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAR-------------ELGDRVLESRALYNLGNVYHAKGKCTGLEA 156 (639)
T ss_pred chhccccccccccchhhhhcccchHHHHHHHHhHHHH-------------HHhHHHhhhHHHhhhhhhhhhcccccCCCC
Confidence 23466778899999999999999999998877532 2223445567788888888876532
Q ss_pred ------------HHHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhcc
Q 002199 596 ------------EAASSALERINEALSISSC------SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADN 657 (954)
Q Consensus 596 ------------~~a~eAL~~l~kaL~~~P~------~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~ 657 (954)
+....|+++|..-|++... ...++-+||..|+.+|+|+.||..-+.-|.+......
T Consensus 157 pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD------ 230 (639)
T KOG1130|consen 157 PEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD------ 230 (639)
T ss_pred hhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh------
Confidence 1122566666666554322 2346777889999999999999988888887764422
Q ss_pred CcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 002199 658 GSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRY 737 (954)
Q Consensus 658 ~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~ 737 (954)
.....+ ++.+||.+|+-+|+++.|+++|++.+.+ .+.+.....++...+.+|+.|.-..++
T Consensus 231 ---rAaeRR--A~sNlgN~hiflg~fe~A~ehYK~tl~L--------------Aielg~r~vEAQscYSLgNtytll~e~ 291 (639)
T KOG1130|consen 231 ---RAAERR--AHSNLGNCHIFLGNFELAIEHYKLTLNL--------------AIELGNRTVEAQSCYSLGNTYTLLKEV 291 (639)
T ss_pred ---HHHHHH--hhcccchhhhhhcccHhHHHHHHHHHHH--------------HHHhcchhHHHHHHHHhhhHHHHHHHH
Confidence 111222 6788999999999999999999998764 334445556677788899999999999
Q ss_pred HHHHHHHHHHHhhcc--CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHhcCH
Q 002199 738 TEAVEHYTVALSTNI--ESRPFAAICFCNRAAALQALGQIADAIADCSLAMALD-----EN-YTKAVSRRAALHEMIRDY 809 (954)
Q Consensus 738 eeAi~~y~kAL~l~~--~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld-----P~-~~~al~~lA~ly~~lg~~ 809 (954)
++||.++.+-|.+.. ++......+++.||.+|..+|..++|+.+.++.+++. +. ...+..++..+...+|.-
T Consensus 292 ~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 292 QKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQE 371 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence 999999999777642 2334556778889999999999999999988887652 32 345566666666666654
Q ss_pred H
Q 002199 810 T 810 (954)
Q Consensus 810 e 810 (954)
+
T Consensus 372 d 372 (639)
T KOG1130|consen 372 D 372 (639)
T ss_pred c
Confidence 4
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-14 Score=156.16 Aligned_cols=284 Identities=12% Similarity=0.046 Sum_probs=246.2
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 442 AAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
...+.+...+..+|.+++..|++.+|+..|+++.-++|..- ...-..|..+...|+++.--..-...+.+
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i----------~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~ 295 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV----------EAMDLYAVLLGQEGGCEQDSALMDYLFAK 295 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh----------hhHHHHHHHHHhccCHhhHHHHHHHHHhh
Confidence 34577888999999999999999999999999999999975 67777888899999999888888888888
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHH
Q 002199 522 DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSA 601 (954)
Q Consensus 522 ~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eA 601 (954)
+.....-|+--+.+++...++..|+.+-++++..+|.+ +..++-++..++..++.+ +|
T Consensus 296 ~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~-------------------~~alilKG~lL~~~~R~~---~A 353 (564)
T KOG1174|consen 296 VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN-------------------HEALILKGRLLIALERHT---QA 353 (564)
T ss_pred hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc-------------------chHHHhccHHHHhccchH---HH
Confidence 87777888889999999999999999999999999976 677888999999999998 78
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHH-HHHH-H
Q 002199 602 LERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLIS-KSYF-C 679 (954)
Q Consensus 602 L~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg-~~y~-~ 679 (954)
+-.|+.+..+.|...+.|..|-.+|+..|++.||.-..+.++...|.+.. ++.++| .+++ .
T Consensus 354 ~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~-----------------~LtL~g~~V~~~d 416 (564)
T KOG1174|consen 354 VIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR-----------------SLTLFGTLVLFPD 416 (564)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh-----------------hhhhhcceeeccC
Confidence 88899999999999999999999999999999999999999999887754 334444 3332 2
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhH
Q 002199 680 IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAA 759 (954)
Q Consensus 680 lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a 759 (954)
----++|.+++++++.+.|.... +...++..+...|++..+|..++++|...+ +.
T Consensus 417 p~~rEKAKkf~ek~L~~~P~Y~~--------------------AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-----D~ 471 (564)
T KOG1174|consen 417 PRMREKAKKFAEKSLKINPIYTP--------------------AVNLIAELCQVEGPTKDIIKLLEKHLIIFP-----DV 471 (564)
T ss_pred chhHHHHHHHHHhhhccCCccHH--------------------HHHHHHHHHHhhCccchHHHHHHHHHhhcc-----cc
Confidence 33358999999999999997754 334478889999999999999999998863 45
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002199 760 ICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRR 799 (954)
Q Consensus 760 ~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~l 799 (954)
.++..||.++...+.+.+|+.+|..||.++|++-.++-.+
T Consensus 472 ~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 472 NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 7889999999999999999999999999999987766544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.7e-13 Score=152.56 Aligned_cols=337 Identities=14% Similarity=0.090 Sum_probs=192.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
.|+..+.+..+|..+...|+-++|..+...++..++..+ .||.-+|.++....+|++||.+|+.||.+.|
T Consensus 37 ~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~----------vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~ 106 (700)
T KOG1156|consen 37 FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH----------VCWHVLGLLQRSDKKYDEAIKCYRNALKIEK 106 (700)
T ss_pred CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccc----------hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 344444555555555555555555555555555555544 4555555555555555555555555555555
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 524 NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 524 ~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
++...|..++.+..++++|+.....-.+.|++.|.. ...|+..+..+...|++..+..-++
T Consensus 107 dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~-------------------ra~w~~~Avs~~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 107 DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ-------------------RASWIGFAVAQHLLGEYKMALEILE 167 (700)
T ss_pred CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh-------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555554444444444432 4456667777777777776666666
Q ss_pred HHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHH
Q 002199 604 RINEALSISSCS-----EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYF 678 (954)
Q Consensus 604 ~l~kaL~~~P~~-----~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~ 678 (954)
.|.+.....|.. ..+......++...|.+++|.+.+..--..--+. +-.....+.+++
T Consensus 168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dk-----------------la~~e~ka~l~~ 230 (700)
T KOG1156|consen 168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDK-----------------LAFEETKADLLM 230 (700)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHH-----------------HHHhhhHHHHHH
Confidence 666655433322 3344455666667777666666554422111111 112334577788
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHcCCHHHHH---
Q 002199 679 CIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHK--------------SAGNEAFKSGRYTEAV--- 741 (954)
Q Consensus 679 ~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~--------------~lG~~~~~~g~~eeAi--- 741 (954)
.++++++|+..|...+...|++..........+.........+..++ .++.....-.++.+.+
T Consensus 231 kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdky 310 (700)
T KOG1156|consen 231 KLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKY 310 (700)
T ss_pred HHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHH
Confidence 88888888888888888877776544332222211111111110000 0000000000111111
Q ss_pred --------------------------HHHHHHHhh-----cc------------CCchhhHHHHHHHHHHHHHhcCHHHH
Q 002199 742 --------------------------EHYTVALST-----NI------------ESRPFAAICFCNRAAALQALGQIADA 778 (954)
Q Consensus 742 --------------------------~~y~kAL~l-----~~------------~~~p~~a~~~~~lA~~y~~lg~~eeA 778 (954)
..+++.+.. .+ +.+....++++.++..|..+|+++.|
T Consensus 311 L~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A 390 (700)
T KOG1156|consen 311 LRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA 390 (700)
T ss_pred HHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH
Confidence 122221110 00 12235667788899999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 779 IADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 779 i~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
..+++.||..-|..++.++..|+++...|++++|...+..+.+++-.+
T Consensus 391 ~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD 438 (700)
T KOG1156|consen 391 LEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD 438 (700)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence 999999999999999999999999999999999999999999986554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-14 Score=144.41 Aligned_cols=213 Identities=17% Similarity=0.058 Sum_probs=184.5
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
...+.+.+...+|..|++.|++..|...+++||+.+|++. .+|..+|.+|..+|+.+.|-+.|++|+.++
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~----------~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~ 99 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY----------LAHLVRAHYYQKLGENDLADESYRKALSLA 99 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----------HHHHHHHHHHHHcCChhhHHHHHHHHHhcC
Confidence 3355678899999999999999999999999999999998 999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
|++..++.+.|..++.+|++++|...|++|+. +|... .....+.+.+...++.|+++ .|.
T Consensus 100 p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~----------------~~s~t~eN~G~Cal~~gq~~---~A~ 159 (250)
T COG3063 100 PNNGDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYG----------------EPSDTLENLGLCALKAGQFD---QAE 159 (250)
T ss_pred CCccchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCC----------------CcchhhhhhHHHHhhcCCch---hHH
Confidence 99999999999999999999999999999998 34321 12456788899999999999 889
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC
Q 002199 603 ERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGK 682 (954)
Q Consensus 603 ~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~ 682 (954)
.+|.++|.++|+.+.....++..++..|+|-.|..+++......+.... .+.+...+--.+|+
T Consensus 160 ~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~-----------------sL~L~iriak~~gd 222 (250)
T COG3063 160 EYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAE-----------------SLLLGIRIAKRLGD 222 (250)
T ss_pred HHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHH-----------------HHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999988776653322 22233456668899
Q ss_pred HHHHHHHHHHHHhhCCCCcc
Q 002199 683 LEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 683 ~eeAl~~l~kal~l~p~~~~ 702 (954)
-+.|-.+=.++....|....
T Consensus 223 ~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 223 RAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHHHHHHhCCCcHH
Confidence 98888887777777776654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-13 Score=155.67 Aligned_cols=278 Identities=8% Similarity=-0.013 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRA-AKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAAD 571 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~L-A~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~ 571 (954)
.-++..|...+..|+|+.|.+.+.++-+..+. +..++.+ +.+...+|+++.|..+|.++.+..|+..
T Consensus 85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~----------- 152 (398)
T PRK10747 85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ----------- 152 (398)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch-----------
Confidence 44566777888899999999888876665433 4444444 6666999999999999999999888751
Q ss_pred HHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhh
Q 002199 572 GLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFA 651 (954)
Q Consensus 572 ~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~ 651 (954)
+...+..+..++..|+++ +|+..++++++..|.++.++..++.+|...|++++|+..+.+..+..+.+..
T Consensus 153 -------~~~~l~~a~l~l~~g~~~---~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~ 222 (398)
T PRK10747 153 -------LPVEITRVRIQLARNENH---AARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE 222 (398)
T ss_pred -------HHHHHHHHHHHHHCCCHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH
Confidence 122334477888899999 7888999999999999999999999999999999999888888776543211
Q ss_pred hhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 652 SVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEA 731 (954)
Q Consensus 652 ~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~ 731 (954)
.. ...+..++..+........+ ...+.++.+..|.. .......+...+..+
T Consensus 223 ~~---------~~l~~~a~~~l~~~~~~~~~----~~~l~~~w~~lp~~----------------~~~~~~~~~~~A~~l 273 (398)
T PRK10747 223 HR---------AMLEQQAWIGLMDQAMADQG----SEGLKRWWKNQSRK----------------TRHQVALQVAMAEHL 273 (398)
T ss_pred HH---------HHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhCCHH----------------HhCCHHHHHHHHHHH
Confidence 00 00000122222111122222 23333333322211 011233556689999
Q ss_pred HHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHH
Q 002199 732 FKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQ 811 (954)
Q Consensus 732 ~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~ee 811 (954)
...|+.++|...+++++... + +..+....+. ...++.++++..+++.++.+|+++..++.+|.++...++|++
T Consensus 274 ~~~g~~~~A~~~L~~~l~~~----~-~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~ 346 (398)
T PRK10747 274 IECDDHDTAQQIILDGLKRQ----Y-DERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQE 346 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC----C-CHHHHHHHhh--ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999854 2 2333222332 344999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHH
Q 002199 812 AASDLQRLVSILENQSA 828 (954)
Q Consensus 812 Ai~~~ekAL~l~p~~~~ 828 (954)
|..+|++++++.|+...
T Consensus 347 A~~~le~al~~~P~~~~ 363 (398)
T PRK10747 347 ASLAFRAALKQRPDAYD 363 (398)
T ss_pred HHHHHHHHHhcCCCHHH
Confidence 99999999999665443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.1e-13 Score=150.63 Aligned_cols=319 Identities=14% Similarity=-0.020 Sum_probs=231.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
+|+.+.++..+|..+...|+++.|...|.++++..|.+.+ -......++.++...|++++|+..++++++.+|
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P 74 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARAT-------ERERAHVEALSAWIAGDLPKALALLEQLLDDYP 74 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 4677888999999999999999999999999999887641 135677889999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHH
Q 002199 524 NFLKVYMRAAKCHLVLGEIENAQHYYHKLLN----SAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAAS 599 (954)
Q Consensus 524 ~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~----l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~ 599 (954)
++..++.. +..+..+|.+..+...+.+++. ..|.. ......++..+...|+++
T Consensus 75 ~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------------~~~~~~~a~~~~~~G~~~--- 131 (355)
T cd05804 75 RDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY-------------------WYLLGMLAFGLEEAGQYD--- 131 (355)
T ss_pred CcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc-------------------HHHHHHHHHHHHHcCCHH---
Confidence 99887776 6667766666655555555553 22221 233445677888999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFC 679 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~ 679 (954)
+|+..+++++.+.|.++.++..+|.++...|++++|+.++++++...|.... .....|..++.++..
T Consensus 132 ~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~-------------~~~~~~~~la~~~~~ 198 (355)
T cd05804 132 RAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSM-------------LRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcc-------------hhHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999998774311 111246678999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hccCCc
Q 002199 680 IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALS----TNIESR 755 (954)
Q Consensus 680 lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~----l~~~~~ 755 (954)
.|++++|+..|++++...|..... ..... ...+...+...|....+..+ +.+.. ..+.
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~-~~~~~--------------~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~-- 260 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPA-LDLLD--------------AASLLWRLELAGHVDVGDRW-EDLADYAAWHFPD-- 260 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChH-HHHhh--------------HHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCc--
Confidence 999999999999997655532210 00000 00011122222322222221 11111 1111
Q ss_pred hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 756 PFAAICFCNRAAALQALGQIADAIADCSLAMALDEN---------YTKAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 756 p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~---------~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
+........++.++...|+.++|...++......-. .......+|.++...|++++|+..+..++.+.
T Consensus 261 ~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 261 HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 222233346888899999999999999887654322 35667788999999999999999999999984
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-15 Score=165.74 Aligned_cols=253 Identities=19% Similarity=0.147 Sum_probs=114.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh-c-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHH
Q 002199 497 NRAATRISLGRMREALEDCMMAAT-V-DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQ 574 (954)
Q Consensus 497 ~lA~~y~~lg~~eeAl~~~~kALe-l-~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~ 574 (954)
.+|.+++..|++++|++.+.+.+. . .|++...|..+|.+...++++++|+..|++++..++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~----------------- 75 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK----------------- 75 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----------------
Confidence 557777777777777777755443 3 366677777777777777777777777777666433
Q ss_pred HHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhh
Q 002199 575 KAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVL 654 (954)
Q Consensus 575 ~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~ 654 (954)
..+..+..++.+ ...+++++|+.+++++.+..++. .
T Consensus 76 ---------------------------------------~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~-~--- 111 (280)
T PF13429_consen 76 ---------------------------------------ANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP-R--- 111 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------cccccccccccc-ccccccccccccccccccccccc-c---
Confidence 334445555666 68899999999999888765432 1
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002199 655 ADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS 734 (954)
Q Consensus 655 ~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~ 734 (954)
.+..+..++...++++++...++++....+.. .....+..+|.++.+.
T Consensus 112 --------------~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~------------------~~~~~~~~~a~~~~~~ 159 (280)
T PF13429_consen 112 --------------YLLSALQLYYRLGDYDEAEELLEKLEELPAAP------------------DSARFWLALAEIYEQL 159 (280)
T ss_dssp --------------------H-HHHTT-HHHHHHHHHHHHH-T---------------------T-HHHHHHHHHHHHHC
T ss_pred --------------hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC------------------CCHHHHHHHHHHHHHc
Confidence 23455678899999999999999987543211 1234567789999999
Q ss_pred CCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 002199 735 GRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAAS 814 (954)
Q Consensus 735 g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~ 814 (954)
|++++|+..|++++.++ |.+..++..++.++...|+++++...+.......|.++..+..+|.+|..+|++++|+.
T Consensus 160 G~~~~A~~~~~~al~~~----P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~ 235 (280)
T PF13429_consen 160 GDPDKALRDYRKALELD----PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALE 235 (280)
T ss_dssp CHHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred CCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccc
Confidence 99999999999999999 88888999999999999999999999999888888888999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhhh
Q 002199 815 DLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEED 859 (954)
Q Consensus 815 ~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~a 859 (954)
+|+++++..| +++.....++.+....+..+.+
T Consensus 236 ~~~~~~~~~p-------------~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 236 YLEKALKLNP-------------DDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp HHHHHHHHST-------------T-HHHHHHHHHHHT--------
T ss_pred cccccccccc-------------cccccccccccccccccccccc
Confidence 9999999955 4444556677776655554443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-13 Score=151.04 Aligned_cols=209 Identities=12% Similarity=0.036 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG-RMREALEDCMMAATVDP 523 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg-~~eeAl~~~~kALel~P 523 (954)
++..+++-.+-.++...+.+++|+..+.++|+++|.+. .+|..++.++..++ .+++|+..+.++++.+|
T Consensus 34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~y----------taW~~R~~iL~~L~~~l~eeL~~~~~~i~~np 103 (320)
T PLN02789 34 PEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNY----------TVWHFRRLCLEALDADLEEELDFAEDVAEDNP 103 (320)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH----------HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC
Confidence 44455554444456778899999999999999999997 89999999999999 68999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHH
Q 002199 524 NFLKVYMRAAKCHLVLGEI--ENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSA 601 (954)
Q Consensus 524 ~~~~a~~~LA~iy~~lG~~--eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eA 601 (954)
++..+|..++.++..+|+. ++++.++.++++++|.+ ...|..++..+...+.++ ++
T Consensus 104 knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN-------------------y~AW~~R~w~l~~l~~~~---ee 161 (320)
T PLN02789 104 KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN-------------------YHAWSHRQWVLRTLGGWE---DE 161 (320)
T ss_pred cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc-------------------HHHHHHHHHHHHHhhhHH---HH
Confidence 9999999999999999974 78899999999999987 566788888888888888 89
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHc---cCH----HHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHH
Q 002199 602 LERINEALSISSCSEKLLEMKADALYML---RKY----EEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLIS 674 (954)
Q Consensus 602 L~~l~kaL~~~P~~~~~~~~lA~~~~~l---g~~----eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg 674 (954)
++.+.++|+++|.+..+|..++.++..+ +.+ ++++.++.++|.++|.+.. +|..++
T Consensus 162 L~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~S-----------------aW~Yl~ 224 (320)
T PLN02789 162 LEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNES-----------------PWRYLR 224 (320)
T ss_pred HHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcC-----------------HHHHHH
Confidence 9999999999999999999999998776 333 5789999999999999865 677788
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhhCCCCcc
Q 002199 675 KSYFC----IGKLEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 675 ~~y~~----lG~~eeAl~~l~kal~l~p~~~~ 702 (954)
.++.. ++...+|+..+.+++...|....
T Consensus 225 ~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~ 256 (320)
T PLN02789 225 GLFKDDKEALVSDPEVSSVCLEVLSKDSNHVF 256 (320)
T ss_pred HHHhcCCcccccchhHHHHHHHhhcccCCcHH
Confidence 88877 45667899999888876665543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-13 Score=153.94 Aligned_cols=228 Identities=15% Similarity=0.087 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhchhhhhhHHHHHHH
Q 002199 491 LVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLG-EIENAQHYYHKLLNSAAAVCLDRRITIEA 569 (954)
Q Consensus 491 la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG-~~eeAl~~yekaL~l~P~~~~~~~~~~ea 569 (954)
...++..+-.++...+++++|+..+.++|+++|.+..+|..++.++..+| .+++|+..+.+++..+|.+
T Consensus 36 ~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn---------- 105 (320)
T PLN02789 36 FREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN---------- 105 (320)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc----------
Confidence 45666666667788889999999999999999999999999999998887 5677777777777766654
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 570 ADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 570 ~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
...|..++..+...+... ..+++..+.+++.++|.+..+|..++.++..+|+|++|++.+.++|+.+|.+
T Consensus 106 ---------yqaW~~R~~~l~~l~~~~-~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 106 ---------YQIWHHRRWLAEKLGPDA-ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred ---------hHHhHHHHHHHHHcCchh-hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence 333444444444333210 1134555555555555555555555555555555555555555555555544
Q ss_pred hhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 650 FASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGN 729 (954)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~ 729 (954)
.. +|..++.++..++.. +.
T Consensus 176 ~s-----------------AW~~R~~vl~~~~~l--------------------------------------------~~ 194 (320)
T PLN02789 176 NS-----------------AWNQRYFVITRSPLL--------------------------------------------GG 194 (320)
T ss_pred hh-----------------HHHHHHHHHHhcccc--------------------------------------------cc
Confidence 32 344444433222110 00
Q ss_pred HHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002199 730 EAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA----LGQIADAIADCSLAMALDENYTKAVSRRAALHEM 805 (954)
Q Consensus 730 ~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~----lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~ 805 (954)
.....++++.+..++|.++ |.+..+|..++.++.. +++..+|+..|.+++..+|..+.|+-.|+.+|..
T Consensus 195 ---~~~~~e~el~y~~~aI~~~----P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 ---LEAMRDSELKYTIDAILAN----PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ---ccccHHHHHHHHHHHHHhC----CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 0012357888899999999 7888899999999988 5677889999999999999999999999999986
Q ss_pred h
Q 002199 806 I 806 (954)
Q Consensus 806 l 806 (954)
.
T Consensus 268 ~ 268 (320)
T PLN02789 268 G 268 (320)
T ss_pred h
Confidence 3
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-12 Score=138.06 Aligned_cols=275 Identities=16% Similarity=0.168 Sum_probs=225.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHH
Q 002199 496 SNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQK 575 (954)
Q Consensus 496 ~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~ 575 (954)
+..|.-++-..+.++|+..|...++.+|...++++.||.+|...|+.+.|+..-+..+. .|+...
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~-------------- 103 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTF-------------- 103 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCch--------------
Confidence 34667777788999999999999999999999999999999999999999999877665 455322
Q ss_pred HHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhh
Q 002199 576 AQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLA 655 (954)
Q Consensus 576 ~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~ 655 (954)
.++......++..|+..|-++ .|...|.........-..++..|..+|....+|++||+..++...+.++...
T Consensus 104 ~qr~lAl~qL~~Dym~aGl~D---RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~---- 176 (389)
T COG2956 104 EQRLLALQQLGRDYMAAGLLD---RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR---- 176 (389)
T ss_pred HHHHHHHHHHHHHHHHhhhhh---HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch----
Confidence 234566778888999999998 6777777777666666788999999999999999999999999988876543
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002199 656 DNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSG 735 (954)
Q Consensus 656 ~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g 735 (954)
......|.-|+..+....+.+.|+..+.++++.+|.... +-..+|.++...|
T Consensus 177 --------~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR--------------------Asi~lG~v~~~~g 228 (389)
T COG2956 177 --------VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR--------------------ASIILGRVELAKG 228 (389)
T ss_pred --------hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee--------------------hhhhhhHHHHhcc
Confidence 112225677888888999999999999999999887754 3334899999999
Q ss_pred CHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 002199 736 RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASD 815 (954)
Q Consensus 736 ~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~ 815 (954)
+|+.|++.++.+++.+| ...+.+...|..||..+|+.++.+..+.++++..+. +.+...++.+-....-.+.|..+
T Consensus 229 ~y~~AV~~~e~v~eQn~---~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~ 304 (389)
T COG2956 229 DYQKAVEALERVLEQNP---EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAY 304 (389)
T ss_pred chHHHHHHHHHHHHhCh---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHH
Confidence 99999999999999985 456778888999999999999999999999998765 45556677777777777888888
Q ss_pred HHHHHHHhh
Q 002199 816 LQRLVSILE 824 (954)
Q Consensus 816 ~ekAL~l~p 824 (954)
+.+-|.-.|
T Consensus 305 l~~Ql~r~P 313 (389)
T COG2956 305 LTRQLRRKP 313 (389)
T ss_pred HHHHHhhCC
Confidence 777776644
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.4e-15 Score=154.26 Aligned_cols=108 Identities=33% Similarity=0.468 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
+....++.++..|+.+++.++|.+|+..|++||+++|.++ .+|.+||.+|.++|.|+.|+++|+.||.+|
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA----------VyycNRAAAy~~Lg~~~~AVkDce~Al~iD 145 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA----------VYYCNRAAAYSKLGEYEDAVKDCESALSID 145 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc----------hHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence 4677899999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
|.+.++|.+||.+|+.+|++++|++.|+++|+++|++.
T Consensus 146 p~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 146 PHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 99999999999999999999999999999999999874
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-13 Score=138.07 Aligned_cols=208 Identities=14% Similarity=0.061 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccC
Q 002199 579 VTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNG 658 (954)
Q Consensus 579 ~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~ 658 (954)
....+.++..|+..|++. .|...++++|+++|.+..+|..+|.+|..+|+.+.|-+.|++++.+.|++..
T Consensus 35 a~arlqLal~YL~~gd~~---~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd------- 104 (250)
T COG3063 35 AKARLQLALGYLQQGDYA---QAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD------- 104 (250)
T ss_pred HHHHHHHHHHHHHCCCHH---HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc-------
Confidence 334555555666666655 5555555666666666666666666666666666666666666666665543
Q ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 002199 659 SVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYT 738 (954)
Q Consensus 659 ~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~e 738 (954)
++.+.|..++.+|++++|...|++++. +|..+. ....+.++|.+.+++|+++
T Consensus 105 ----------VLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~-----------------~s~t~eN~G~Cal~~gq~~ 156 (250)
T COG3063 105 ----------VLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGE-----------------PSDTLENLGLCALKAGQFD 156 (250)
T ss_pred ----------hhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCC-----------------cchhhhhhHHHHhhcCCch
Confidence 344555666666666666666666654 222222 1123445566666666666
Q ss_pred HHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 739 EAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQR 818 (954)
Q Consensus 739 eAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ek 818 (954)
.|.++|+++|.++ |..+.....++..++..|+|..|..++++...--+-....+.....+-..+|+-+.|.++=.+
T Consensus 157 ~A~~~l~raL~~d----p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 157 QAEEYLKRALELD----PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred hHHHHHHHHHHhC----cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6666666666665 444555555566666666666666666655555555555555555555566666665555555
Q ss_pred HHHHhhhhHH
Q 002199 819 LVSILENQSA 828 (954)
Q Consensus 819 AL~l~p~~~~ 828 (954)
+..++|...+
T Consensus 233 L~r~fP~s~e 242 (250)
T COG3063 233 LQRLFPYSEE 242 (250)
T ss_pred HHHhCCCcHH
Confidence 5555554443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-13 Score=148.63 Aligned_cols=278 Identities=16% Similarity=0.108 Sum_probs=219.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 441 TAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT 520 (954)
Q Consensus 441 ~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe 520 (954)
+...|+.+..|..++-.++..++|++|+-.+++.++++|... ..+...+.|+..+++..+|.+.++
T Consensus 76 i~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~----------k~~~r~~~c~~a~~~~i~A~~~~~---- 141 (486)
T KOG0550|consen 76 IDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS----------KGQLREGQCHLALSDLIEAEEKLK---- 141 (486)
T ss_pred HHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc----------ccccchhhhhhhhHHHHHHHHHhh----
Confidence 345577799999999999999999999999999999999987 788899999999999888887776
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHH
Q 002199 521 VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASS 600 (954)
Q Consensus 521 l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~e 600 (954)
+..++ ....|+..+++.+..... .+ .-...-+..+..+...++++ .
T Consensus 142 ----~~~~~-----------~~anal~~~~~~~~s~s~---~p-------------ac~~a~~lka~cl~~~~~~~---~ 187 (486)
T KOG0550|consen 142 ----SKQAY-----------KAANALPTLEKLAPSHSR---EP-------------ACFKAKLLKAECLAFLGDYD---E 187 (486)
T ss_pred ----hhhhh-----------HHhhhhhhhhcccccccC---Cc-------------hhhHHHHhhhhhhhhcccch---h
Confidence 11111 122233333332221110 00 00122334455666777777 6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc
Q 002199 601 ALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI 680 (954)
Q Consensus 601 AL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l 680 (954)
|+...-..+++++.+..+++.+|.+++...+.+.|+..|+++|.++|+....... ......+..|...|.-.++.
T Consensus 188 a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~-----~~~~k~le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 188 AQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA-----SMMPKKLEVKKERGNDAFKN 262 (486)
T ss_pred HHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH-----hhhHHHHHHHHhhhhhHhhc
Confidence 6777777888899999999999999999999999999999999999987543221 12223345677889999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHH
Q 002199 681 GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAI 760 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~ 760 (954)
|+|.+|.++|..+|.++|.+.. ..+..|.+++.+..+.|+..+||...+.|+.++ +....
T Consensus 263 G~y~~A~E~Yteal~idP~n~~----------------~naklY~nra~v~~rLgrl~eaisdc~~Al~iD----~syik 322 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKK----------------TNAKLYGNRALVNIRLGRLREAISDCNEALKID----SSYIK 322 (486)
T ss_pred cchhHHHHHHHHhhcCCccccc----------------hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC----HHHHH
Confidence 9999999999999999998755 234567889999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002199 761 CFCNRAAALQALGQIADAIADCSLAMALDEN 791 (954)
Q Consensus 761 ~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~ 791 (954)
++..+|.||+.+++|++|+++|++|+++..+
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999998765
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-11 Score=139.70 Aligned_cols=271 Identities=14% Similarity=0.045 Sum_probs=233.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
..|..-+..+.+.+-++-|+..|..+|+..|.....|.+.+..-..-|..++-...+++++...|..
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pka------------- 583 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKA------------- 583 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcc-------------
Confidence 5566667777777888888888888888888888888888888788888888888888888877743
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~ 652 (954)
-..|+..+..+...|+.. .|...+.++++.+|++.++++..-.+.+...+++.|..++.++....|..
T Consensus 584 ------e~lwlM~ake~w~agdv~---~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe--- 651 (913)
T KOG0495|consen 584 ------EILWLMYAKEKWKAGDVP---AARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE--- 651 (913)
T ss_pred ------hhHHHHHHHHHHhcCCcH---HHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc---
Confidence 223566667777778777 78888889999999999999999999999999999999999998876643
Q ss_pred hhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 653 VLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAF 732 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~ 732 (954)
+ .|+.-+.+...++..++|+.+++++++..|+... .|..+|+++.
T Consensus 652 -------------R--v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K--------------------l~lmlGQi~e 696 (913)
T KOG0495|consen 652 -------------R--VWMKSANLERYLDNVEEALRLLEEALKSFPDFHK--------------------LWLMLGQIEE 696 (913)
T ss_pred -------------h--hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH--------------------HHHHHhHHHH
Confidence 2 4667788888999999999999999999987765 4667999999
Q ss_pred HcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHH
Q 002199 733 KSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQA 812 (954)
Q Consensus 733 ~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeA 812 (954)
++++.+.|.+.|...++.. |....+|..++.+-.+.|+.-.|...++++.-.+|.+...|+....+-++.|+.++|
T Consensus 697 ~~~~ie~aR~aY~~G~k~c----P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKC----PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHHHHHHHHhccccC----CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999 788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhH
Q 002199 813 ASDLQRLVSILENQS 827 (954)
Q Consensus 813 i~~~ekAL~l~p~~~ 827 (954)
...+-+||+-.|...
T Consensus 773 ~~lmakALQecp~sg 787 (913)
T KOG0495|consen 773 ELLMAKALQECPSSG 787 (913)
T ss_pred HHHHHHHHHhCCccc
Confidence 999999999988764
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.5e-14 Score=149.21 Aligned_cols=124 Identities=29% Similarity=0.475 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Q 002199 717 TVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAV 796 (954)
Q Consensus 717 ~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al 796 (954)
....+..+...|+-+++.++|.+|+..|.+||.++ |.++.+|+++|.+|.++|+|+.|+++|+.||.+||.+.++|
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~----P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay 152 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELD----PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAY 152 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC----CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHH
Confidence 34456778889999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhh
Q 002199 797 SRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSME 857 (954)
Q Consensus 797 ~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e 857 (954)
.+||.+|..+|++++|++.|+++|+|+|++..+ +..|..|.+.+.+..
T Consensus 153 ~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~-------------K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 153 GRLGLAYLALGKYEEAIEAYKKALELDPDNESY-------------KSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHccCcHHHHHHHHHhhhccCCCcHHH-------------HHHHHHHHHHhcCCC
Confidence 999999999999999999999999997766554 478888877776554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-11 Score=154.89 Aligned_cols=300 Identities=10% Similarity=0.037 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHH
Q 002199 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP-NFLK 527 (954)
Q Consensus 449 e~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P-~~~~ 527 (954)
..|..+-..+.+.|++++|..+|.++++...... ...|..+..+|.+.|++++|++.|+...+... -+..
T Consensus 438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD---------~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv 508 (1060)
T PLN03218 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKAD---------CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC---------HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 4455556667788888888888888877543321 26778888888888888888888888876543 2567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--chhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNS--AAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERI 605 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l--~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l 605 (954)
.|..+...|.+.|++++|++.|.+.... .|+ ...|..+...+...|+++ +|++.+
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD--------------------~vTYnsLI~a~~k~G~~d---eA~~lf 565 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD--------------------RVVFNALISACGQSGAVD---RAFDVL 565 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC--------------------HHHHHHHHHHHHHCCCHH---HHHHHH
Confidence 7888888888888888888888877653 232 223444455555666666 555555
Q ss_pred HHHHh----cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcC
Q 002199 606 NEALS----ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIG 681 (954)
Q Consensus 606 ~kaL~----~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG 681 (954)
.++.. +.|+ ...|..+..+|.+.|++++|+++|+.+.+...... ...|..+...|.+.|
T Consensus 566 ~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~----------------~~tynsLI~ay~k~G 628 (1060)
T PLN03218 566 AEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT----------------PEVYTIAVNSCSQKG 628 (1060)
T ss_pred HHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC----------------hHHHHHHHHHHHhcC
Confidence 55543 2333 44566666677777777777777776655432110 014555666677777
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHH
Q 002199 682 KLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAIC 761 (954)
Q Consensus 682 ~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~ 761 (954)
++++|+.+|.+.....-... ...|..+...|.+.|++++|+++|.++++... +.+..+
T Consensus 629 ~~deAl~lf~eM~~~Gv~PD-------------------~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~---~pd~~t 686 (1060)
T PLN03218 629 DWDFALSIYDDMKKKGVKPD-------------------EVFFSALVDVAGHAGDLDKAFEILQDARKQGI---KLGTVS 686 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCC-------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCCHHH
Confidence 77777777776655321111 11233344445555555555555555544321 223344
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002199 762 FCNRAAALQALGQIADAIADCSLAMAL--DENYTKAVSRRAALHEMIRDYTQAASDLQRLV 820 (954)
Q Consensus 762 ~~~lA~~y~~lg~~eeAi~~~ekAL~l--dP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL 820 (954)
|..+..+|.+.|++++|+..|++.... .| +...|..+...|.+.|++++|++.|+++.
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555555555555555554332 22 23445555555555555555555555443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-11 Score=155.76 Aligned_cols=302 Identities=12% Similarity=0.059 Sum_probs=235.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV--DPN 524 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel--~P~ 524 (954)
....|..+-..|.+.|++++|..+|.++.+....-. ...|..+...|.+.|++++|++.|....+. .|+
T Consensus 471 D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd---------vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD 541 (1060)
T PLN03218 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN---------VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC---------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 345677788889999999999999999987643211 278999999999999999999999998764 454
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----chhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHH
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNS----AAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASS 600 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l----~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~e 600 (954)
...|..+...|.+.|++++|.+.|.+.... .|+ ...+..+...+...|+++ +
T Consensus 542 -~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD--------------------~vTynaLI~ay~k~G~ld---e 597 (1060)
T PLN03218 542 -RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD--------------------HITVGALMKACANAGQVD---R 597 (1060)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc--------------------HHHHHHHHHHHHHCCCHH---H
Confidence 578999999999999999999999998763 343 233455556677888888 6
Q ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhh--hhhhhhhhhccCcchhhHHHHHHHHHHHHHH
Q 002199 601 ALERINEALSIS-SCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVA--EKNFASVLADNGSVTYSLARLWRWRLISKSY 677 (954)
Q Consensus 601 AL~~l~kaL~~~-P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~--p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y 677 (954)
|++.|+.+.+.. +.+...|..+...|.+.|++++|+.+|++..+.. |+. ..|..+...|
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~------------------~TynsLI~a~ 659 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE------------------VFFSALVDVA 659 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------------------HHHHHHHHHH
Confidence 778888877765 4567788889999999999999999999887652 321 1566778889
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchh
Q 002199 678 FCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPF 757 (954)
Q Consensus 678 ~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~ 757 (954)
...|++++|+.+++++.+...... ...+..+...|.+.|++++|++.|+++..... ..
T Consensus 660 ~k~G~~eeA~~l~~eM~k~G~~pd-------------------~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~---~P 717 (1060)
T PLN03218 660 GHAGDLDKAFEILQDARKQGIKLG-------------------TVSYSSLMGACSNAKNWKKALELYEDIKSIKL---RP 717 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCC-------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CC
Confidence 999999999999999876532221 12456677888899999999999988866432 22
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 758 AAICFCNRAAALQALGQIADAIADCSLAMAL--DENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 758 ~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l--dP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
+...|..+...|.+.|++++|+..|++.... .| +...|..+...+.+.|++++|...+.++++.
T Consensus 718 dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4567888888899999999999999987654 34 4556677778888999999999988888764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.3e-12 Score=142.56 Aligned_cols=351 Identities=18% Similarity=0.122 Sum_probs=239.5
Q ss_pred hhcccHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHH
Q 002199 422 KVQNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAAT 501 (954)
Q Consensus 422 k~~~~~~~~e~~~~~~~~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~ 501 (954)
..+...+.-+.+..+.. .++..--.|..+|..+...++|++||.+|+.|+.+.|+|. .+|..++..
T Consensus 53 ~lg~~~ea~~~vr~glr----~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~----------qilrDlslL 118 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLR----NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL----------QILRDLSLL 118 (700)
T ss_pred cccchHHHHHHHHHHhc----cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH----------HHHHHHHHH
Confidence 44555555555554333 3344556899999999999999999999999999999997 999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHH
Q 002199 502 RISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTE 581 (954)
Q Consensus 502 y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~ 581 (954)
..++++|+.....-.+.+++.|.....|+..|..+..+|++..|....+.........+ . -........
T Consensus 119 Q~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~-s----------~~~~e~se~ 187 (700)
T KOG1156|consen 119 QIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSP-S----------KEDYEHSEL 187 (700)
T ss_pred HHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-C----------HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887766441000 0 011122334
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcch
Q 002199 582 YINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVT 661 (954)
Q Consensus 582 ~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~ 661 (954)
.+.+...+...|.++ +|++.+..--..--+........|.+++.++++++|+..|...+..+|++....
T Consensus 188 ~Ly~n~i~~E~g~~q---~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy-------- 256 (700)
T KOG1156|consen 188 LLYQNQILIEAGSLQ---KALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYY-------- 256 (700)
T ss_pred HHHHHHHHHHcccHH---HHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHH--------
Confidence 455555666666666 444444332211123345566778999999999999999999999999886522
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCc-----------------------------------ch--
Q 002199 662 YSLARLWRWRLISKSYFCIGKLEVAL-DLLQKLEQVGSISD-----------------------------------RY-- 703 (954)
Q Consensus 662 ~~~~~l~a~~~Lg~~y~~lG~~eeAl-~~l~kal~l~p~~~-----------------------------------~~-- 703 (954)
..+-.++..-.+--+++ ..|...-+..|... ..
T Consensus 257 ---------~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~ 327 (700)
T KOG1156|consen 257 ---------EGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLR 327 (700)
T ss_pred ---------HHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhH
Confidence 11111111011111111 22221111111000 00
Q ss_pred -------hhHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchh
Q 002199 704 -------GSEILESSMSLA-------------------GTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPF 757 (954)
Q Consensus 704 -------~~~~l~~~~~l~-------------------~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~ 757 (954)
...+++.+...+ .....+..+..++..+...|+++.|..+++.||.-. |.
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT----PT 403 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT----PT 403 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC----ch
Confidence 011222222111 112334566678899999999999999999999888 88
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 758 AAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVS 821 (954)
Q Consensus 758 ~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~ 821 (954)
....|...|.++...|++++|..++..+-++|-.+.-.-..-|.-..+..+.++|.+..-+.-+
T Consensus 404 liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 404 LIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhh
Confidence 9999999999999999999999999999999855443333456666777888888777655443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.4e-12 Score=147.47 Aligned_cols=322 Identities=16% Similarity=0.109 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
..+.+.-+..++...|++++|++++........+.. .++-.+|.+++.+|++++|...|...|..+|++.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~----------~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~ 72 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKL----------AVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY 72 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 467778888999999999999999999888777765 8899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHH
Q 002199 527 KVYMRAAKCHLVLG-----EIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSA 601 (954)
Q Consensus 527 ~a~~~LA~iy~~lG-----~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eA 601 (954)
..|..+..++.... ..+.-...|+......|.....+........+ ..+-. .+
T Consensus 73 ~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g-------~~F~~---------------~~ 130 (517)
T PF12569_consen 73 DYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEG-------DEFKE---------------RL 130 (517)
T ss_pred HHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCH-------HHHHH---------------HH
Confidence 99999988884433 46677788888777777532221111111000 00111 11
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcC
Q 002199 602 LERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIG 681 (954)
Q Consensus 602 L~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG 681 (954)
-.++...+.. .-|.+...+-.+|....+..-...++...+...................+...+|+++.+++.|...|
T Consensus 131 ~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g 208 (517)
T PF12569_consen 131 DEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG 208 (517)
T ss_pred HHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC
Confidence 2222222221 22333333333333222222222222222111110000000001112345667899999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHH
Q 002199 682 KLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAIC 761 (954)
Q Consensus 682 ~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~ 761 (954)
++++|+.++++++...|.... .+...|.++-..|++.+|.++++.|-.++ ..+-.+
T Consensus 209 ~~~~Al~~Id~aI~htPt~~e--------------------ly~~KarilKh~G~~~~Aa~~~~~Ar~LD----~~DRyi 264 (517)
T PF12569_consen 209 DYEKALEYIDKAIEHTPTLVE--------------------LYMTKARILKHAGDLKEAAEAMDEARELD----LADRYI 264 (517)
T ss_pred CHHHHHHHHHHHHhcCCCcHH--------------------HHHHHHHHHHHCCCHHHHHHHHHHHHhCC----hhhHHH
Confidence 999999999999999887643 56678999999999999999999999999 666667
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCC-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 762 FCNRAAALQALGQIADAIADCSLAMALD--ENY-------TKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 762 ~~~lA~~y~~lg~~eeAi~~~ekAL~ld--P~~-------~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
-...+..+++.|+.++|+..+..-...+ |.. .+....-|.+|.+.|++..|+..|..+++++..-
T Consensus 265 NsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 265 NSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDF 338 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 7777888999999999999998876554 211 3334556999999999999999999999887643
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.6e-13 Score=144.73 Aligned_cols=361 Identities=15% Similarity=0.124 Sum_probs=241.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 497 NRAATRISLGRMREALEDCMMAATVDPNF----LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 497 ~lA~~y~~lg~~eeAl~~~~kALel~P~~----~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
.-|.-+++.|++...+..|+.||+.-.++ ..+|..||.+|+.+++|++|+++-..-|.+... .
T Consensus 22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~-------------l 88 (639)
T KOG1130|consen 22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARL-------------L 88 (639)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHH-------------h
Confidence 34667789999999999999999998766 457889999999999999999987665543211 1
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHccCH-------------H
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSIS------SCSEKLLEMKADALYMLRKY-------------E 633 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~------P~~~~~~~~lA~~~~~lg~~-------------e 633 (954)
-.+...+...-+++..+-..|.|+ +|+.+..+-|.+. -....+++++|.+|...|+. +
T Consensus 89 gdklGEAKssgNLGNtlKv~G~fd---eA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ 165 (639)
T KOG1130|consen 89 GDKLGEAKSSGNLGNTLKVKGAFD---EALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNA 165 (639)
T ss_pred cchhccccccccccchhhhhcccc---hHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccH
Confidence 112333455667778888888998 5555555544432 23467899999999988752 3
Q ss_pred HHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHH
Q 002199 634 EAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMS 713 (954)
Q Consensus 634 eAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~ 713 (954)
++...++.+++....+....... ....+.-.+|-.||..|+.+|+|+.|+...+.-+.+...
T Consensus 166 ev~~al~~Av~fy~eNL~l~~~l----gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~e-------------- 227 (639)
T KOG1130|consen 166 EVTSALENAVKFYMENLELSEKL----GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQE-------------- 227 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHH--------------
Confidence 44444555544444433322111 111222226778999999999999999998887665322
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--cCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-
Q 002199 714 LAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN--IESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDE- 790 (954)
Q Consensus 714 l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~--~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP- 790 (954)
.......-.++.++|+++.-.|+++.|+++|..++.+. ..+....+...|.||..|.-+.++.+||.++.+-|.+..
T Consensus 228 fGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe 307 (639)
T KOG1130|consen 228 FGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE 307 (639)
T ss_pred hhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233334578899999999999999999999987664 344567788889999999999999999999999887642
Q ss_pred -----CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhhhh-----
Q 002199 791 -----NYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEEDA----- 860 (954)
Q Consensus 791 -----~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~a~----- 860 (954)
....+++.||.+|-.+|..++|+.+.++.+++.-.- +...+...++..|...+..++......
T Consensus 308 L~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev-------~D~sgelTar~Nlsdl~~~lG~~ds~~~~te~ 380 (639)
T KOG1130|consen 308 LEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEV-------NDTSGELTARDNLSDLILELGQEDSLVDDTEL 380 (639)
T ss_pred HHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh-------CCcchhhhhhhhhHHHHHHhCCCcccCCcHHH
Confidence 346789999999999999999999999998883221 112223444455555544443221100
Q ss_pred --ccCCCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCC
Q 002199 861 --KKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRS 900 (954)
Q Consensus 861 --k~~~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~ 900 (954)
......---.+-||.+.....+....|. .++.-|||..
T Consensus 381 ~i~s~a~~~~as~ng~~~~~grR~sme~~~--l~k~tpdk~~ 420 (639)
T KOG1130|consen 381 IIDSSADPAPASINGVHPKLGRRESMETYF--LKKNTPDKPV 420 (639)
T ss_pred HhhccCCCCCccccccccchhhHHHHHHHH--HHhcCCCCcc
Confidence 0000000011225555555555555554 3466788843
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8e-13 Score=155.80 Aligned_cols=319 Identities=13% Similarity=-0.013 Sum_probs=224.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 002199 460 KNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVL 539 (954)
Q Consensus 460 ~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~l 539 (954)
..++...|...|-+++++++... .+|..+|..|...-+...|..+|.+|.++|+.+..+.-..+..|...
T Consensus 470 ~rK~~~~al~ali~alrld~~~a----------paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~ 539 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDVSLA----------PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEE 539 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcccchh----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcc
Confidence 34567888888888888888875 88888888888888888888899999999988888888888888888
Q ss_pred CCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHH
Q 002199 540 GEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLL 619 (954)
Q Consensus 540 G~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~ 619 (954)
..+++|....-.+-+..|.. .....|..++..++..++.. .|+..++.++..+|.+...|
T Consensus 540 ~~we~a~~I~l~~~qka~a~-----------------~~k~nW~~rG~yyLea~n~h---~aV~~fQsALR~dPkD~n~W 599 (1238)
T KOG1127|consen 540 STWEEAFEICLRAAQKAPAF-----------------ACKENWVQRGPYYLEAHNLH---GAVCEFQSALRTDPKDYNLW 599 (1238)
T ss_pred ccHHHHHHHHHHHhhhchHH-----------------HHHhhhhhccccccCccchh---hHHHHHHHHhcCCchhHHHH
Confidence 88888888865555544421 11234555666777777777 78999999999999999999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002199 620 EMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSI 699 (954)
Q Consensus 620 ~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~ 699 (954)
..+|++|...|+|..|+..+.++..++|.+.- ..+..+.+....|+|.+|+..+...+.....
T Consensus 600 ~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y-----------------~~fk~A~~ecd~GkYkeald~l~~ii~~~s~ 662 (1238)
T KOG1127|consen 600 LGLGEAYPESGRYSHALKVFTKASLLRPLSKY-----------------GRFKEAVMECDNGKYKEALDALGLIIYAFSL 662 (1238)
T ss_pred HHHHHHHHhcCceehHHHhhhhhHhcCcHhHH-----------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987632 3344455555566666655555543322111
Q ss_pred Ccchhh-----------------------------------------------------------------------HHH
Q 002199 700 SDRYGS-----------------------------------------------------------------------EIL 708 (954)
Q Consensus 700 ~~~~~~-----------------------------------------------------------------------~~l 708 (954)
...... .++
T Consensus 663 e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il 742 (1238)
T KOG1127|consen 663 ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIIL 742 (1238)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHH
Confidence 000000 000
Q ss_pred HH-HHH-----------H--------HHHHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhccCCchhhHH
Q 002199 709 ES-SMS-----------L--------AGTVRALLHHKSAGNEAFK--------SGRYTEAVEHYTVALSTNIESRPFAAI 760 (954)
Q Consensus 709 ~~-~~~-----------l--------~~~~~~~~~~~~lG~~~~~--------~g~~eeAi~~y~kAL~l~~~~~p~~a~ 760 (954)
.. ... + .........|+++|..|++ +.+...|+.++.++++++ .++..
T Consensus 743 ~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~----ann~~ 818 (1238)
T KOG1127|consen 743 SKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC----ANNEG 818 (1238)
T ss_pred HHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh----hccHH
Confidence 00 000 0 0000112234566665554 223346778888888877 66777
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHH
Q 002199 761 CFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEK 830 (954)
Q Consensus 761 ~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~ 830 (954)
.|..||.+ -..|++.-|.-.|-+.+.+.|...-+|.++|.++....+++.|...|.++..++|.+...-
T Consensus 819 ~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~W 887 (1238)
T KOG1127|consen 819 LWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQW 887 (1238)
T ss_pred HHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHH
Confidence 77777776 5557788888888888888888888888888888888888888888888888888775543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.3e-12 Score=156.69 Aligned_cols=191 Identities=10% Similarity=-0.002 Sum_probs=132.6
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhh--hhhhhhhhhccCcch
Q 002199 584 NCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVA--EKNFASVLADNGSVT 661 (954)
Q Consensus 584 ~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~--p~~~~~~~~~~~~~~ 661 (954)
.+...|.+.|+++ +|...|++... .+...|..+...|...|+.++|+++|++.+... |+.
T Consensus 365 ~Li~~y~k~G~~~---~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~------------ 426 (697)
T PLN03081 365 ALVDLYSKWGRME---DARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH------------ 426 (697)
T ss_pred HHHHHHHHCCCHH---HHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH------------
Confidence 3444555556666 45555554432 234456666666666666667766666655432 211
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Q 002199 662 YSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAV 741 (954)
Q Consensus 662 ~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi 741 (954)
..+..+..++...|.+++|..+|+...+..+..+. ...|..+...|.+.|++++|+
T Consensus 427 ------~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~------------------~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 427 ------VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR------------------AMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred ------HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC------------------ccchHhHHHHHHhcCCHHHHH
Confidence 13444555666666677776666666543222211 224556788899999999999
Q ss_pred HHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 742 EHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVS 821 (954)
Q Consensus 742 ~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~ 821 (954)
+.++++- .. | +..+|..+..++...|+++.|...+++.+++.|++...|..++.+|...|++++|.+.++...+
T Consensus 483 ~~~~~~~-~~----p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 483 AMIRRAP-FK----P-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHCC-CC----C-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9987642 21 2 4567888999999999999999999999999999999999999999999999999999988765
Q ss_pred H
Q 002199 822 I 822 (954)
Q Consensus 822 l 822 (954)
.
T Consensus 557 ~ 557 (697)
T PLN03081 557 K 557 (697)
T ss_pred c
Confidence 4
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-11 Score=151.24 Aligned_cols=329 Identities=10% Similarity=0.017 Sum_probs=237.8
Q ss_pred hhhcccHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccc--c-------------
Q 002199 421 DKVQNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETA--G------------- 485 (954)
Q Consensus 421 ~k~~~~~~~~e~~~~~~~~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~--~------------- 485 (954)
.+.+....+...+.+... .....|..+...|.+.|++++|+.+|.+.++..+..... .
T Consensus 169 ~k~g~~~~A~~lf~~m~~-------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE-------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred hcCCCHHHHHHHHhcCCC-------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 344444455555544221 134578889999999999999999999998754321100 0
Q ss_pred -----------cCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 486 -----------CCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLN 554 (954)
Q Consensus 486 -----------~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~ 554 (954)
....+-..++..+..+|.+.|++++|...|+... +.+..+|..+...|.+.|++++|+..|++...
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 0000012345567778888999999998887653 45677888899999999999999999988765
Q ss_pred h--chhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Q 002199 555 S--AAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSIS-SCSEKLLEMKADALYMLRK 631 (954)
Q Consensus 555 l--~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~-P~~~~~~~~lA~~~~~lg~ 631 (954)
. .|+ ...+......+...+.++ +|.+.+..+++.. +.+..++..+...|.+.|+
T Consensus 319 ~g~~pd--------------------~~t~~~ll~a~~~~g~~~---~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~ 375 (697)
T PLN03081 319 SGVSID--------------------QFTFSIMIRIFSRLALLE---HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR 375 (697)
T ss_pred cCCCCC--------------------HHHHHHHHHHHHhccchH---HHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC
Confidence 3 232 223455566667777777 5666666666654 5567788889999999999
Q ss_pred HHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHH
Q 002199 632 YEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESS 711 (954)
Q Consensus 632 ~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~ 711 (954)
+++|..+|++..+.+ . ..|..+...|...|+.++|++.|++.....-...
T Consensus 376 ~~~A~~vf~~m~~~d---~-----------------~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd---------- 425 (697)
T PLN03081 376 MEDARNVFDRMPRKN---L-----------------ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN---------- 425 (697)
T ss_pred HHHHHHHHHhCCCCC---e-----------------eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC----------
Confidence 999999999876521 1 1578888999999999999999999876432211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002199 712 MSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDEN 791 (954)
Q Consensus 712 ~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~ 791 (954)
...+..+...+...|.+++|.++|+...+...- ..+...|..+..+|.+.|++++|++.+++. ...|
T Consensus 426 ---------~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~--~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p- 492 (697)
T PLN03081 426 ---------HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI--KPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP- 492 (697)
T ss_pred ---------HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC--CCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-
Confidence 123555667788999999999999998764311 123456777889999999999999998764 2334
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 792 YTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 792 ~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
+...|..+...+...|+++.|...+++++++.|+
T Consensus 493 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 493 TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 4567888999999999999999999999988554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-12 Score=138.30 Aligned_cols=191 Identities=13% Similarity=0.043 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
+..++.++.+|..++..|+|++|+..|++++...|.++ ....+++.+|.+|+.+|++++|+..|+++++..|+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~ 102 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP-------YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN 102 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence 45677899999999999999999999999999999874 12357899999999999999999999999999998
Q ss_pred cHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 002199 525 FLK---VYMRAAKCHLVL--------GEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQK 593 (954)
Q Consensus 525 ~~~---a~~~LA~iy~~l--------G~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g 593 (954)
++. +++.+|.++... |++++|+..|++++..+|.+................ .....+..+..++..|
T Consensus 103 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~--~~~~~~~~a~~~~~~g 180 (235)
T TIGR03302 103 HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR--LAGKELYVARFYLKRG 180 (235)
T ss_pred CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcC
Confidence 765 799999999987 889999999999999999875433222221111111 1223456778888999
Q ss_pred ChHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHhchhhh
Q 002199 594 TSEAASSALERINEALSISSC---SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAE 647 (954)
Q Consensus 594 ~~~~a~eAL~~l~kaL~~~P~---~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p 647 (954)
++. +|+..+.+++...|+ .+.+++.+|.++..+|++++|+.+++.+....|
T Consensus 181 ~~~---~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 181 AYV---AAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred ChH---HHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999 788899999988665 468999999999999999999998887765443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.9e-11 Score=124.59 Aligned_cols=270 Identities=12% Similarity=0.078 Sum_probs=215.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-----
Q 002199 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF----- 525 (954)
Q Consensus 451 l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~----- 525 (954)
-+-.|..++-..+.++|++.|...++.+|... .++..+|..+...|..+.||..-+..+. .|+.
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~----------e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr 106 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETF----------EAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQR 106 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhh----------HHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHH
Confidence 35678888999999999999999999999986 8999999999999999999997665554 5554
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 002199 526 LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERI 605 (954)
Q Consensus 526 ~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l 605 (954)
..+++.||.-|+..|-++.|...|....... .. ...+.-.+...|-..++|+ +||+..
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-ef------------------a~~AlqqLl~IYQ~treW~---KAId~A 164 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EF------------------AEGALQQLLNIYQATREWE---KAIDVA 164 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hh------------------hHHHHHHHHHHHHHhhHHH---HHHHHH
Confidence 5688999999999999999999999876632 11 0112223344555666777 888888
Q ss_pred HHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc
Q 002199 606 NEALSISSCS-----EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI 680 (954)
Q Consensus 606 ~kaL~~~P~~-----~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l 680 (954)
++..++.+.. +..|..+|..+....+.+.|+..+.++++.+|++.. +-..+|.++...
T Consensus 165 ~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR-----------------Asi~lG~v~~~~ 227 (389)
T COG2956 165 ERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR-----------------ASIILGRVELAK 227 (389)
T ss_pred HHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee-----------------hhhhhhHHHHhc
Confidence 8888887765 567788999999999999999999999999998855 556899999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHH
Q 002199 681 GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAI 760 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~ 760 (954)
|+|+.|++.++.+++.+|.... ..+-.+..+|...|+.++.+..+.++++..++. .
T Consensus 228 g~y~~AV~~~e~v~eQn~~yl~-------------------evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-----~ 283 (389)
T COG2956 228 GDYQKAVEALERVLEQNPEYLS-------------------EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-----D 283 (389)
T ss_pred cchHHHHHHHHHHHHhChHHHH-------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-----c
Confidence 9999999999999998875533 123336778999999999999999999987433 3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Q 002199 761 CFCNRAAALQALGQIADAIADCSLAMALDENYTK 794 (954)
Q Consensus 761 ~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~ 794 (954)
+...++..-....=.+.|..++.+-|...|+--.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g 317 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG 317 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH
Confidence 3344555556666678888888888998997443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.2e-11 Score=151.33 Aligned_cols=323 Identities=12% Similarity=0.023 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCccccc------------------------CCchHHHHHHHHHHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSV--PLSETAGC------------------------CIKPLVLCYSNRAAT 501 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~--P~~~~~~~------------------------~~~~la~~~~~lA~~ 501 (954)
...|..+...|.+.|++++|+.+|.+..+.. |+...... ...+...++..+...
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3457777777888888888888887765433 44321000 000012345556666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHH
Q 002199 502 RISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTE 581 (954)
Q Consensus 502 y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~ 581 (954)
|.+.|++++|++.|++..+ .+...|..+...|...|++++|+..|++.+..-+.+.........+...+........
T Consensus 434 y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 7777777777777766543 2345666777777777777777777777764321111111111111111111111111
Q ss_pred H----------------HHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchh
Q 002199 582 Y----------------INCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPV 645 (954)
Q Consensus 582 ~----------------l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l 645 (954)
. -.+...|.+.|+++ +|+..|... +.+...|..+...|...|+.++|+.+|++.++.
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~---~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~ 583 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMN---YAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHH---HHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 1 12234556677777 566666654 456777888888888899999999988887654
Q ss_pred --hhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 002199 646 --AEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLH 723 (954)
Q Consensus 646 --~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~ 723 (954)
.|+.. .+..+-..+...|.+++|..+|+......+..+. ...
T Consensus 584 g~~Pd~~------------------T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~------------------~~~ 627 (857)
T PLN03077 584 GVNPDEV------------------TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN------------------LKH 627 (857)
T ss_pred CCCCCcc------------------cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc------------------hHH
Confidence 23321 3444556677888889998888887744333322 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
|..+...+.+.|++++|.+.+++. .+. | +..+|..+-.++...++.+.|....+++++++|++...|..++.+|
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m-~~~----p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~y 701 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKM-PIT----P-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLY 701 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHC-CCC----C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence 666889999999999999999875 233 3 3566777777788889999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHH
Q 002199 804 EMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 804 ~~lg~~eeAi~~~ekAL~l 822 (954)
...|+|++|.+..+...+.
T Consensus 702 a~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 702 ADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHCCChHHHHHHHHHHHHc
Confidence 9999999999988777554
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.7e-13 Score=147.71 Aligned_cols=158 Identities=21% Similarity=0.242 Sum_probs=129.4
Q ss_pred hhhccccccCCCCCcccCCCCCCC-----ccccCCCCCcccccccccchhhhhhhhcccHHHHHHHHhhcCCCChhhHHH
Q 002199 373 KLRKKSKKKVGNNSFVISPSPNDK-----VSFSHQASSSLCKTVNGEEENKYEDKVQNKFEAAEEVKQRTVSPTAAFQET 447 (954)
Q Consensus 373 ~~~kk~~~k~~~~~~~~~P~~~~s-----~~Fsp~~~s~~~~~~~e~d~~~~~~k~~~~~~~~e~~~~~~~~~~~~~~~~ 447 (954)
..++++++..+..++.|||++.+. +.|.+. -...|.+...+..+.
T Consensus 158 i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~------------------------------~~~s~~~~~~e~l~~ 207 (397)
T KOG0543|consen 158 IDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELK------------------------------EDESWKMFAEERLEA 207 (397)
T ss_pred eCcccccCCCCCCCCCCCCCceEEEEEEEEeeecC------------------------------cccccccchHHHHHH
Confidence 456888888899999999999983 122211 112233344456777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccC-----CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCC-----IKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~-----~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
+...+..|+.||+.|+|..|+..|++|+...+........ ...+..++.|+|.||+++++|.+|+..|.++|+++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 8889999999999999999999999999987654322111 11257899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
|++.+++|++|.+|..+|+|+.|+..|+++++++|.|.
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk 325 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK 325 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH
Confidence 99999999999999999999999999999999999873
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.7e-11 Score=136.62 Aligned_cols=274 Identities=14% Similarity=0.030 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNF---LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEA 569 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~---~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea 569 (954)
..|..+|.++...|+++.|...+.++....|.. ....+..|.++...|++++|+..+++++...|.+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~-------- 78 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLL-------- 78 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--------
Confidence 999999999999999999999999999887744 567888899999999999999999999999997621
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH----hcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchh
Q 002199 570 ADGLQKAQKVTEYINCSGKLLE----QKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPV 645 (954)
Q Consensus 570 ~~~l~~~~~~~~~l~~a~~ll~----~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l 645 (954)
.+.. +..++. .+....+.++ +.......|.....+..+|.++...|++++|+..+++++++
T Consensus 79 -----------a~~~-~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 143 (355)
T cd05804 79 -----------ALKL-HLGAFGLGDFSGMRDHVARV---LPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL 143 (355)
T ss_pred -----------HHHH-hHHHHHhcccccCchhHHHH---HhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1110 112222 2333322233 33344567788888889999999999999999999999999
Q ss_pred hhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 002199 646 AEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHK 725 (954)
Q Consensus 646 ~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~ 725 (954)
.|.+. +.+..+|.+|+..|++++|+.++++++...|..+.. ....+.
T Consensus 144 ~p~~~-----------------~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~----------------~~~~~~ 190 (355)
T cd05804 144 NPDDA-----------------WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSML----------------RGHNWW 190 (355)
T ss_pred CCCCc-----------------HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcch----------------hHHHHH
Confidence 99873 367889999999999999999999999987753221 122455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHH--HHHHHHHHhcCHHHHHHH--H-HHHHHhCCC--CHHHHHH
Q 002199 726 SAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFC--NRAAALQALGQIADAIAD--C-SLAMALDEN--YTKAVSR 798 (954)
Q Consensus 726 ~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~--~lA~~y~~lg~~eeAi~~--~-ekAL~ldP~--~~~al~~ 798 (954)
.+|.++...|++++|+..|++++...+.... ....+. .+...+...|....+..+ . .......|. .......
T Consensus 191 ~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 269 (355)
T cd05804 191 HLALFYLERGDYEAALAIYDTHIAPSAESDP-ALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLH 269 (355)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccccCCCh-HHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHH
Confidence 6899999999999999999999866532111 111101 222223333432222222 1 111111122 2233346
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 799 RAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 799 lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
++.++...|+.++|...++.+....
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 270 AALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 7888999999999999998887663
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-10 Score=131.82 Aligned_cols=331 Identities=13% Similarity=0.034 Sum_probs=203.8
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..|+...+++..-.++.+.++|++|+.. |+..+.... .....+..|.|.++++..++|+.+++ -++
T Consensus 41 ~~pdd~~a~~cKvValIq~~ky~~ALk~----ikk~~~~~~-------~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~ 106 (652)
T KOG2376|consen 41 IVPDDEDAIRCKVVALIQLDKYEDALKL----IKKNGALLV-------INSFFFEKAYCEYRLNKLDEALKTLK---GLD 106 (652)
T ss_pred cCCCcHhhHhhhHhhhhhhhHHHHHHHH----HHhcchhhh-------cchhhHHHHHHHHHcccHHHHHHHHh---ccc
Confidence 3366777777777778888888887733 333332110 00223678888888888888888877 445
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
+....++...|++++++|+|++|+..|+..++.+.+... ......++..+ .++
T Consensus 107 ~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d--------------~~~r~nl~a~~-------------a~l 159 (652)
T KOG2376|consen 107 RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD--------------EERRANLLAVA-------------AAL 159 (652)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH--------------HHHHHHHHHHH-------------Hhh
Confidence 556667778888888888888888888887765433200 00000011111 111
Q ss_pred HH-HHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc
Q 002199 603 ER-INEALSISSC-SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI 680 (954)
Q Consensus 603 ~~-l~kaL~~~P~-~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l 680 (954)
.. ..+.+...|. +.+.+++.|.+++..|+|.+|++.+++++++............. ......-.+...++.++..+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eE--eie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEE--EIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchh--hHHHHHHHHHHHHHHHHHHh
Confidence 11 2344444554 67899999999999999999999999997776654331111111 11111122567889999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHH
Q 002199 681 GKLEVALDLLQKLEQVGSISDRYGSEILESSMSL-----------------------------AGTVRALLHHKSAGNEA 731 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l-----------------------------~~~~~~~~~~~~lG~~~ 731 (954)
|+.++|...|..+++..|.+.....-....+..+ ....+.-..+.+.+...
T Consensus 238 Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred cchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887764332111111111 01111112233444444
Q ss_pred HHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCHH
Q 002199 732 FKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY-TKAVSRRAALHEMIRDYT 810 (954)
Q Consensus 732 ~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~-~~al~~lA~ly~~lg~~e 810 (954)
+-.+.-+.+.+.. ..+ |...|....-...+.........+.+|+..+....+-+|.. ..+.+.++.+.+.+|+++
T Consensus 318 l~tnk~~q~r~~~---a~l-p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 318 LFTNKMDQVRELS---ASL-PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHhhhHHHHHHHH---HhC-CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 4444444333322 222 22223333322333333334447999999999999999988 778889999999999999
Q ss_pred HHHHHHHHHH
Q 002199 811 QAASDLQRLV 820 (954)
Q Consensus 811 eAi~~~ekAL 820 (954)
.|++.+...+
T Consensus 394 ~A~~il~~~~ 403 (652)
T KOG2376|consen 394 VALEILSLFL 403 (652)
T ss_pred HHHHHHHHHh
Confidence 9999999554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.5e-12 Score=150.48 Aligned_cols=325 Identities=14% Similarity=0.064 Sum_probs=221.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
....|..+|..|...+++.+|+..|+.|++.+|++. .+|..+|.+|...|+|..|++.|.+|..++|...
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~----------n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDY----------NLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcCCchhH----------HHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 445678899999999999999999999999999997 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChH----HHHHHH
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSE----AASSAL 602 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~----~a~eAL 602 (954)
.+.+..|.+...+|+|.+|+..+...+............+ ++.++..+..++..|-+. -+++++
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gL------------aE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGL------------AESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhH------------HHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 9999999999999999999999998887543221111112 222233333333222222 222455
Q ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHccCHH--HHHHHH--------HHhchhhhhhhhhhhhccCcchhh-HHHHHHH
Q 002199 603 ERINEALSIS-SCSEKLLEMKADALYMLRKYE--EAIQLC--------EHTLPVAEKNFASVLADNGSVTYS-LARLWRW 670 (954)
Q Consensus 603 ~~l~kaL~~~-P~~~~~~~~lA~~~~~lg~~e--eAi~~~--------ekaL~l~p~~~~~~~~~~~~~~~~-~~~l~a~ 670 (954)
+.+.-++... -.+...|..++.+..-.-..+ --...+ +..+.+..++...+.......... ......|
T Consensus 699 e~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~W 778 (1238)
T KOG1127|consen 699 ESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPW 778 (1238)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchH
Confidence 5554444443 334444444444332221111 111111 111111001100000000000000 1113478
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 002199 671 RLISKSYFC--------IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVE 742 (954)
Q Consensus 671 ~~Lg~~y~~--------lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~ 742 (954)
++||..|++ ..+-..|+.++.+++++..++.. .|..+|.+ -..|.+.-|.-
T Consensus 779 yNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~--------------------~WnaLGVl-sg~gnva~aQH 837 (1238)
T KOG1127|consen 779 YNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEG--------------------LWNALGVL-SGIGNVACAQH 837 (1238)
T ss_pred HHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHH--------------------HHHHHHHh-hccchhhhhhh
Confidence 899988875 23345799999999988765543 45556766 55688999999
Q ss_pred HHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 743 HYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQR 818 (954)
Q Consensus 743 ~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ek 818 (954)
+|-+++... |.....|.|+|.++....+++-|...|.++..++|.+...|...+.+....|+.-++...+..
T Consensus 838 CfIks~~se----p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 838 CFIKSRFSE----PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhhhhhcc----ccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 999999888 788889999999999999999999999999999999999999999999999988888887766
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.9e-12 Score=134.72 Aligned_cols=183 Identities=13% Similarity=-0.013 Sum_probs=150.3
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 611 ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLL 690 (954)
Q Consensus 611 ~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l 690 (954)
.++..+..++.+|..++..|++++|+..+++++...|.+... ..+++.+|.+|+..|++++|+..|
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--------------~~a~~~la~~~~~~~~~~~A~~~~ 93 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYA--------------EQAQLDLAYAYYKSGDYAEAIAAA 93 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhH--------------HHHHHHHHHHHHhcCCHHHHHHHH
Confidence 445678899999999999999999999999999999865320 116788999999999999999999
Q ss_pred HHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhccCCchhh-H--
Q 002199 691 QKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS--------GRYTEAVEHYTVALSTNIESRPFA-A-- 759 (954)
Q Consensus 691 ~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~--------g~~eeAi~~y~kAL~l~~~~~p~~-a-- 759 (954)
+++++..|.++... .++..+|.+++.. +++++|+..|++++...|.+.... +
T Consensus 94 ~~~l~~~p~~~~~~-----------------~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 94 DRFIRLHPNHPDAD-----------------YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred HHHHHHCcCCCchH-----------------HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 99999999876521 2345567777665 889999999999999986542111 0
Q ss_pred ----------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 760 ----------ICFCNRAAALQALGQIADAIADCSLAMALDEN---YTKAVSRRAALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 760 ----------~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~---~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
.....+|.+|+..|++.+|+..|++++...|+ .+.+++.+|.++..+|++++|+.+++.+...+|
T Consensus 157 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 157 RMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 11246789999999999999999999999765 468999999999999999999999888776644
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.5e-11 Score=127.46 Aligned_cols=333 Identities=16% Similarity=0.032 Sum_probs=226.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002199 457 QAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCH 536 (954)
Q Consensus 457 ~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy 536 (954)
.++...+|..|+.+++-.+..+.... ..+-..+|.|++.+|+|++|+..|+-+.+.+.-..+.+.+||.|+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE---------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~ 101 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEE---------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCK 101 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhh---------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHH
Confidence 35678899999999998887665543 267778899999999999999999999987777789999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhchhhhhhHHH-------------HHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 537 LVLGEIENAQHYYHKLLNSAAAVCLDRRI-------------TIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 537 ~~lG~~eeAl~~yekaL~l~P~~~~~~~~-------------~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
+.+|.|.+|...-.++-+ .+.-.+. +......++.. .+..+.+|...+..-.|+ +||+
T Consensus 102 FyLg~Y~eA~~~~~ka~k----~pL~~RLlfhlahklndEk~~~~fh~~LqD~--~EdqLSLAsvhYmR~HYQ---eAId 172 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKAPK----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT--LEDQLSLASVHYMRMHYQ---EAID 172 (557)
T ss_pred HHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh--HHHHHhHHHHHHHHHHHH---HHHH
Confidence 999999999988776533 2221111 11111222221 356677788888777888 8999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccC----------------------c--
Q 002199 604 RINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNG----------------------S-- 659 (954)
Q Consensus 604 ~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~----------------------~-- 659 (954)
.|.+.+..+|....+...+|.||+++.-|+-+.+.+.-.|+..|+.........+ .
T Consensus 173 vYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 173 VYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred HHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 9999999999999999999999999999999988888877777765332111000 0
Q ss_pred ------------c-----------hhhHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHH--
Q 002199 660 ------------V-----------TYSLAR--LWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSM-- 712 (954)
Q Consensus 660 ------------~-----------~~~~~~--l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~-- 712 (954)
+ -+++.. ..+..+|...|+++++..+|+.+.+. ++|..+.... +....
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~Eyi--lKgvv~a 327 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYI--LKGVVFA 327 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHH--HHHHHHH
Confidence 0 000000 11445677778899999999887754 4566554331 00000
Q ss_pred HH------HHHHHHHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHH
Q 002199 713 SL------AGTVRALL-----------------HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAAL 769 (954)
Q Consensus 713 ~l------~~~~~~~~-----------------~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y 769 (954)
.+ ...+..+. ....++..++-..+|++-+.++...-..- .++-...+|+|.++
T Consensus 328 alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF----~NdD~Fn~N~AQAk 403 (557)
T KOG3785|consen 328 ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF----TNDDDFNLNLAQAK 403 (557)
T ss_pred HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcchhhhHHHHHH
Confidence 00 00111111 11234556666777777777776655544 44556778888899
Q ss_pred HHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 002199 770 QALGQIADAIADCSLAMALD-ENYTKAVSRRAALHEMIRDYTQAASDL 816 (954)
Q Consensus 770 ~~lg~~eeAi~~~ekAL~ld-P~~~~al~~lA~ly~~lg~~eeAi~~~ 816 (954)
...|+|.+|.+.|-++-..+ .+.......+|.||.+.+..+-|...|
T Consensus 404 ~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 404 LATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 99999999988887654333 233445566788888888888877665
|
|
| >COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-13 Score=150.40 Aligned_cols=67 Identities=37% Similarity=0.555 Sum_probs=60.2
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCC-ChhHH---HHHHHHHHHCCCCCcccccccccCCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRS-EYDQE---QEIRKATKESPQNSHYGRSSDAYGYAC 932 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~-~~~~~---e~~~~~~~~l~~~~~~r~~yD~~g~~~ 932 (954)
..|||++|||+++|++.||||||||||++||||+++ ..+++ .+|.+||++|++ |++|++||+||...
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD-~eKRa~YD~fG~~~ 73 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSD-PEKRAAYDQFGHAG 73 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCC-HHHHHHhhccCccc
Confidence 579999999999999999999999999999999999 55544 567788999997 99999999999773
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.7e-12 Score=124.52 Aligned_cols=113 Identities=17% Similarity=0.179 Sum_probs=102.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002199 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHE 804 (954)
Q Consensus 725 ~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~ 804 (954)
..+|.++...|++++|+.+|++++.++ |.+..+|+++|.++..+|++++|+..|++++.++|.++.+++.+|.++.
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDFSWLVMAQ----PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 347999999999999999999999999 8889999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhh
Q 002199 805 MIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLS 854 (954)
Q Consensus 805 ~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~ 854 (954)
.+|++++|+..|++++++. |+++..+..++.++..+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~~-------------p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMS-------------YADASWSEIRQNAQIMVD 140 (144)
T ss_pred HcCCHHHHHHHHHHHHHhC-------------CCChHHHHHHHHHHHHHH
Confidence 9999999999999999994 555555566666665543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6e-10 Score=126.44 Aligned_cols=338 Identities=17% Similarity=0.073 Sum_probs=203.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002199 452 RLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMR 531 (954)
Q Consensus 452 ~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~ 531 (954)
++++.++|+.+..++|+.+++ -+++.+. .++..+|.+++++|+|++|+..|+..++-+.++.+...+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~----------~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r 149 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDD----------KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERR 149 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccch----------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 689999999999999999999 3334433 688899999999999999999999999988777666555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhc
Q 002199 532 AAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSI 611 (954)
Q Consensus 532 LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~ 611 (954)
...+-... +... + .++..|....+ ..+.+++.+..++..|+|. +|++.++.++.+
T Consensus 150 ~nl~a~~a-----~l~~-~-~~q~v~~v~e~---------------syel~yN~Ac~~i~~gky~---qA~elL~kA~~~ 204 (652)
T KOG2376|consen 150 ANLLAVAA-----ALQV-Q-LLQSVPEVPED---------------SYELLYNTACILIENGKYN---QAIELLEKALRI 204 (652)
T ss_pred HHHHHHHH-----hhhH-H-HHHhccCCCcc---------------hHHHHHHHHHHHHhcccHH---HHHHHHHHHHHH
Confidence 43322111 1111 0 23333322111 2456899999999999999 666666666332
Q ss_pred C-------CCC--------HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccC-cc--------hh-----
Q 002199 612 S-------SCS--------EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNG-SV--------TY----- 662 (954)
Q Consensus 612 ~-------P~~--------~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~-~~--------~~----- 662 (954)
. ... ..+...++.++..+|+.++|..+|...|+.+|.+......... ++ ..
T Consensus 205 ~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~ 284 (652)
T KOG2376|consen 205 CREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLK 284 (652)
T ss_pred HHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHH
Confidence 1 111 3467889999999999999999999999988866432211100 00 00
Q ss_pred -------hHHHH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHH-HHHHHHHH-------
Q 002199 663 -------SLARL-----------WRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEIL-ESSMSLAG------- 716 (954)
Q Consensus 663 -------~~~~l-----------~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l-~~~~~l~~------- 716 (954)
.+... -.+.+.+.+.+..+.-+.+.+. +..+-+..+......+ ..+.....
T Consensus 285 ~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~---~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~ 361 (652)
T KOG2376|consen 285 SKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL---SASLPGMSPESLFPILLQEATKVREKKHKKAI 361 (652)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HHhCCccCchHHHHHHHHHHHHHHHHHHhhhH
Confidence 00000 0222333333334433333322 2233333333221111 11110000
Q ss_pred ----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc---CCchhhHHHHHHHHHHHHHhcCHHHHHHHHH
Q 002199 717 ----------TVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI---ESRPFAAICFCNRAAALQALGQIADAIADCS 783 (954)
Q Consensus 717 ----------~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~---~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~e 783 (954)
..........++.+.+.+|+++.|++.+...+.... ..-...+.+-..+-..|+..++-+-|...+.
T Consensus 362 e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~ 441 (652)
T KOG2376|consen 362 ELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLD 441 (652)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHH
Confidence 001133455678899999999999999993331110 0001233344444456666666555666666
Q ss_pred HHHHh-------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHH
Q 002199 784 LAMAL-------DENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEK 830 (954)
Q Consensus 784 kAL~l-------dP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~ 830 (954)
.|+.. .+.....+...+....+.|+-++|...|+++++.+|++.+..
T Consensus 442 ~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l 495 (652)
T KOG2376|consen 442 SAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLL 495 (652)
T ss_pred HHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHH
Confidence 55532 233334455567777888999999999999999987776543
|
|
| >KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-13 Score=146.32 Aligned_cols=67 Identities=39% Similarity=0.565 Sum_probs=60.6
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
...|||++|||+++|++.|||+|||||||+|||||++.. +.+.++..||++|++ |++|+.||+||..
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsD-pekRk~YD~~GEe 84 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSD-PEKRKHYDTYGEE 84 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcC-HHHHHHHHhhhHh
Confidence 368999999999999999999999999999999999755 445678889999997 9999999999966
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.3e-10 Score=142.97 Aligned_cols=317 Identities=13% Similarity=0.092 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV--DPN 524 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel--~P~ 524 (954)
+...+..+...|.+.|++++|..+|++... | +. ..|..+...|.+.|++++|++.|++..+. .|+
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~-d~----------~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMET--K-DA----------VSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-Ce----------eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 456788899999999999999999998643 3 32 67999999999999999999999987654 466
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh-hhHHHH----------HHHHHHHHHHH--hHHHHHHHHHHHHH
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC-LDRRIT----------IEAADGLQKAQ--KVTEYINCSGKLLE 591 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~-~~~~~~----------~ea~~~l~~~~--~~~~~l~~a~~ll~ 591 (954)
.. .+..+-.++...|++++|.+.+..+++...... .....+ .++...+.... .+..|......+..
T Consensus 389 ~~-t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 389 EI-TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL 467 (857)
T ss_pred ce-eHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 53 444445577888889999888888877543210 000001 11111111110 01223333444555
Q ss_pred hcChHHHHHHHHHHHHHHhc-CCCCHHHHH----------------------------------HHHHHHHHccCHHHHH
Q 002199 592 QKTSEAASSALERINEALSI-SSCSEKLLE----------------------------------MKADALYMLRKYEEAI 636 (954)
Q Consensus 592 ~g~~~~a~eAL~~l~kaL~~-~P~~~~~~~----------------------------------~lA~~~~~lg~~eeAi 636 (954)
.++++ +|+..|.+.+.. .|+...+.. .+-..|.+.|++++|.
T Consensus 468 ~g~~~---eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 468 NNRCF---EALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred CCCHH---HHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 55555 455555555432 233222111 1123344444444444
Q ss_pred HHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcchhhHHHHHHHHH
Q 002199 637 QLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVG--SISDRYGSEILESSMSL 714 (954)
Q Consensus 637 ~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~--p~~~~~~~~~l~~~~~l 714 (954)
..|+.. +.+ ...|..+...|...|+.++|+.+|++..+.. |+..
T Consensus 545 ~~f~~~----~~d-----------------~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~------------- 590 (857)
T PLN03077 545 NQFNSH----EKD-----------------VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV------------- 590 (857)
T ss_pred HHHHhc----CCC-----------------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-------------
Confidence 444433 111 1145555666666666666666666655422 2211
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Q 002199 715 AGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTK 794 (954)
Q Consensus 715 ~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~ 794 (954)
.+..+-..+...|.+++|+++|+.......- ..+...|..+..+|.+.|++++|.+.+++. .+.|+ +.
T Consensus 591 --------T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi--~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~ 658 (857)
T PLN03077 591 --------TFISLLCACSRSGMVTQGLEYFHSMEEKYSI--TPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PA 658 (857)
T ss_pred --------cHHHHHHHHhhcChHHHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HH
Confidence 1222334455667777777777766533211 113355666666777777777777766653 23443 44
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 795 AVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.|..+-..+...++.+.|....++++++.|++
T Consensus 659 ~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~ 690 (857)
T PLN03077 659 VWGALLNACRIHRHVELGELAAQHIFELDPNS 690 (857)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Confidence 55555556666667777766666676664443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-11 Score=147.05 Aligned_cols=244 Identities=13% Similarity=0.059 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
.++..+...|...+++++|++.++.+++..|+...+|+.+|.++++.+++.+|... .++.+-+.+.
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~------------ 97 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL------------ 97 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc------------
Confidence 89999999999999999999999999999999999999999999999999988777 6666544321
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~ 652 (954)
++ .+++++...+...+.+..+++.+|.||-.+|++++|+..|+++|+++|.+..
T Consensus 98 ---------------------~~----~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~- 151 (906)
T PRK14720 98 ---------------------KW----AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE- 151 (906)
T ss_pred ---------------------ch----hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH-
Confidence 11 2444444455555666667777777777777777777777777777776654
Q ss_pred hhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 653 VLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAF 732 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~ 732 (954)
+...+|..|... ++++|+.++.+|+.. ++
T Consensus 152 ----------------aLNn~AY~~ae~-dL~KA~~m~~KAV~~----------------------------------~i 180 (906)
T PRK14720 152 ----------------IVKKLATSYEEE-DKEKAITYLKKAIYR----------------------------------FI 180 (906)
T ss_pred ----------------HHHHHHHHHHHh-hHHHHHHHHHHHHHH----------------------------------HH
Confidence 556667777766 777777777777542 33
Q ss_pred HcCCHHHHHHHHHHHHhhccCCc----------------hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Q 002199 733 KSGRYTEAVEHYTVALSTNIESR----------------PFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAV 796 (954)
Q Consensus 733 ~~g~~eeAi~~y~kAL~l~~~~~----------------p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al 796 (954)
..++|..+.+++.+.+..+|.+- .....++.-+=.+|...++|++++..++.+|+++|.+..++
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~ 260 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAR 260 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhH
Confidence 44455555555555555553221 11122233333666677777777777777777777777777
Q ss_pred HHHHHHHHHh--------------------cCHHHHHHHHHHHHHHhhhhH
Q 002199 797 SRRAALHEMI--------------------RDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 797 ~~lA~ly~~l--------------------g~~eeAi~~~ekAL~l~p~~~ 827 (954)
..++.+|... ..+..|+..|++.+...+.+.
T Consensus 261 ~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G~y 311 (906)
T PRK14720 261 EELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTGNF 311 (906)
T ss_pred HHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCCCE
Confidence 7777777522 345667777777777766543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=122.80 Aligned_cols=128 Identities=16% Similarity=0.075 Sum_probs=116.0
Q ss_pred HHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHH
Q 002199 636 IQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLA 715 (954)
Q Consensus 636 i~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~ 715 (954)
..+|++++.++|.+ ++.+|.++...|++++|+.+|++++.++|.+..
T Consensus 13 ~~~~~~al~~~p~~--------------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~------------- 59 (144)
T PRK15359 13 EDILKQLLSVDPET--------------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWR------------- 59 (144)
T ss_pred HHHHHHHHHcCHHH--------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH-------------
Confidence 45788899998865 345799999999999999999999999997754
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH
Q 002199 716 GTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKA 795 (954)
Q Consensus 716 ~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~a 795 (954)
.+..+|.++...|++++|+..|++++.++ |.++.+++++|.++..+|++++|+..|++++.+.|+++..
T Consensus 60 -------a~~~lg~~~~~~g~~~~A~~~y~~Al~l~----p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~ 128 (144)
T PRK15359 60 -------AHIALAGTWMMLKEYTTAINFYGHALMLD----ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASW 128 (144)
T ss_pred -------HHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 67789999999999999999999999999 8899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 002199 796 VSRRAALHEMIR 807 (954)
Q Consensus 796 l~~lA~ly~~lg 807 (954)
+..++.+...++
T Consensus 129 ~~~~~~~~~~l~ 140 (144)
T PRK15359 129 SEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHHHHHH
Confidence 999988876653
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-09 Score=138.89 Aligned_cols=334 Identities=17% Similarity=0.066 Sum_probs=234.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF---- 525 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~---- 525 (954)
.....+..++..|++++|...+.++....+.... .........+...++.++...|++++|...++.+++..+..
T Consensus 411 l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 489 (903)
T PRK04841 411 LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNI-ELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYS 489 (903)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCc-ccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHH
Confidence 4456788888999999999999998876443210 00011234566678999999999999999999999865542
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHH
Q 002199 526 -LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALER 604 (954)
Q Consensus 526 -~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~ 604 (954)
..++..+|.++...|++++|+..+++++....... ...........++..++..|+++ .|...
T Consensus 490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g-------------~~~~~~~~~~~la~~~~~~G~~~---~A~~~ 553 (903)
T PRK04841 490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD-------------VYHYALWSLLQQSEILFAQGFLQ---AAYET 553 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-------------chHHHHHHHHHHHHHHHHCCCHH---HHHHH
Confidence 24567889999999999999999999988643210 00111234566788888999999 55555
Q ss_pred HHHHHhcC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHH
Q 002199 605 INEALSIS--------SCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKS 676 (954)
Q Consensus 605 l~kaL~~~--------P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~ 676 (954)
+.+++.+. +....++..+|.++...|++++|...+.+++.+...... ......+..+|.+
T Consensus 554 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~la~~ 621 (903)
T PRK04841 554 QEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP------------QQQLQCLAMLAKI 621 (903)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc------------hHHHHHHHHHHHH
Confidence 55555431 112345667899999999999999999999887542211 0112255678999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCch
Q 002199 677 YFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRP 756 (954)
Q Consensus 677 y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p 756 (954)
+...|++++|...+.+++.+...... ... .. ..........+...|+.+.|..++............
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~-~~~-------~~-----~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 688 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRY-HSD-------WI-----ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNH 688 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccc-cHh-------Hh-----hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccch
Confidence 99999999999999999776433211 000 00 000001124445678999999988776543321111
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 757 FAAICFCNRAAALQALGQIADAIADCSLAMALD------ENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 757 ~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld------P~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
.....+..+|.++..+|++++|+..+++++... .....++..+|.++...|++++|...+.+++++...
T Consensus 689 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 689 FLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 223346788999999999999999999998763 223567888999999999999999999999999644
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.6e-09 Score=114.04 Aligned_cols=335 Identities=10% Similarity=0.011 Sum_probs=230.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
....|...|.--..++++..|...|++||..+-.+. .+|...+.+-|+......|...+.+|+.+-|.-.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~i----------tLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd 141 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNI----------TLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD 141 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccc----------hHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH
Confidence 456788888888889999999999999999998876 8999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhH---------HHHHHHHHHHHHHH--------------------
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDR---------RITIEAADGLQKAQ-------------------- 577 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~---------~~~~ea~~~l~~~~-------------------- 577 (954)
..|+..-..-..+|+...|.+.|++-+...|+...-. .....+...+.+..
T Consensus 142 qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 142 QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHG 221 (677)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcC
Confidence 8888888888889999999999999988888532100 00000000000000
Q ss_pred ----------------------------------------hHHHHHHHHHHHHHh-----------------cChHHHHH
Q 002199 578 ----------------------------------------KVTEYINCSGKLLEQ-----------------KTSEAASS 600 (954)
Q Consensus 578 ----------------------------------------~~~~~l~~a~~ll~~-----------------g~~~~a~e 600 (954)
++...+..|...+-. |+....+.
T Consensus 222 ~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 222 NVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 000011111111100 11111112
Q ss_pred HHH-----HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHH
Q 002199 601 ALE-----RINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISK 675 (954)
Q Consensus 601 AL~-----~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~ 675 (954)
+|- .|+..+..+|.+-+.|+..-.+....|+.+.-.+.|++||.-.|.... ..+-+-++|+-+-.
T Consensus 302 ~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~e----------kr~W~RYIYLWinY 371 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASE----------KRYWRRYIYLWINY 371 (677)
T ss_pred HHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhH----------HHHHHHHHHHHHHH
Confidence 221 366677788999889988888888899999999999999988775321 11111122222333
Q ss_pred HH---HHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002199 676 SY---FCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI 752 (954)
Q Consensus 676 ~y---~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~ 752 (954)
++ +...+.+.+...|+.++.+.|...-. -+..|...|....++.+...|.+.+-.||...|
T Consensus 372 alyeEle~ed~ertr~vyq~~l~lIPHkkFt----------------FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cP 435 (677)
T KOG1915|consen 372 ALYEELEAEDVERTRQVYQACLDLIPHKKFT----------------FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCP 435 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcCcccch----------------HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCC
Confidence 32 36789999999999999998855332 223455567777777888888888888888775
Q ss_pred CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 753 ESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 753 ~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
.+. ++-..-.+-.++++++.....|++-|+..|.+..+|...|.+-..+|+.+.|...|+-|+..
T Consensus 436 K~K-----lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 436 KDK-----LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred chh-----HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 332 22333355667778888888888888888888888888888888888888888888777754
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.4e-11 Score=118.87 Aligned_cols=110 Identities=30% Similarity=0.464 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
.+.+..+...|+.+|..|+|.+|..-|..||.++|... .+....+|.|+|.|+++++.++.||.+|.+||+++|.
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~-----~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt 166 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS-----TEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT 166 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc-----HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch
Confidence 56688899999999999999999999999999999875 4667899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
+.+++.++|.+|..+.+|++|++.|.++++++|..
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 99999999999999999999999999999999975
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.7e-13 Score=139.41 Aligned_cols=223 Identities=15% Similarity=0.087 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 002199 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKV 528 (954)
Q Consensus 449 e~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a 528 (954)
..+.++|+.||++|.|++||+||.++|.++|.++ ..+.|+|.+|+++.+|..|..+|..|+.++..+.++
T Consensus 98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np----------V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KA 167 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP----------VYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKA 167 (536)
T ss_pred HHHHHhhhhhhhccchhHHHHHhhhhhccCCCCc----------cchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence 3478999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHh-------HHHHH---------HHHHHHHHh
Q 002199 529 YMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQK-------VTEYI---------NCSGKLLEQ 592 (954)
Q Consensus 529 ~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~-------~~~~l---------~~a~~ll~~ 592 (954)
|.++|.+...+|...+|.+.++.+|++.|....-+.....+....++-.. +.+.- ..+..+...
T Consensus 168 YSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~ 247 (536)
T KOG4648|consen 168 YSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKK 247 (536)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhh
Confidence 99999999999999999999999999999754333222222111110000 00000 011222233
Q ss_pred cChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHH
Q 002199 593 KTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRL 672 (954)
Q Consensus 593 g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~ 672 (954)
+.+. .++..|..-+.....+..+... +..|....++++|+..+-+++...|..... ...
T Consensus 248 ~~~~---~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~-----------------~s~ 306 (536)
T KOG4648|consen 248 AMRS---VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPD-----------------TSG 306 (536)
T ss_pred hccc---cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcc-----------------cCC
Confidence 3333 3333333333333333333333 778888888999998888888777654221 112
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 002199 673 ISKSYFCIGKLEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 673 Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~ 702 (954)
.+.+-.-+|...++...++.++.+.|....
T Consensus 307 ~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~ 336 (536)
T KOG4648|consen 307 PPKAETIAKTSKEVKPTKQTAVKVAPAVET 336 (536)
T ss_pred CchhHHHHhhhhhcCcchhheeeecccccc
Confidence 233444456677788888888888776654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-10 Score=141.52 Aligned_cols=267 Identities=9% Similarity=-0.067 Sum_probs=189.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 441 TAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT 520 (954)
Q Consensus 441 ~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe 520 (954)
..-.|...++|..+...+...+++++|+...+.+++..|+.. .+|+.+|.++++.+++.+|... .++.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i----------~~yy~~G~l~~q~~~~~~~~lv--~~l~ 91 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI----------SALYISGILSLSRRPLNDSNLL--NLID 91 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce----------ehHHHHHHHHHhhcchhhhhhh--hhhh
Confidence 344578899999999999999999999999999999999987 8999999999999998777665 5555
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHH
Q 002199 521 VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASS 600 (954)
Q Consensus 521 l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~e 600 (954)
+-+.+. ++ .++++|-..+-..+.+ -.+++.+|..|-..|+++ +
T Consensus 92 ~~~~~~--------------~~-~~ve~~~~~i~~~~~~-------------------k~Al~~LA~~Ydk~g~~~---k 134 (906)
T PRK14720 92 SFSQNL--------------KW-AIVEHICDKILLYGEN-------------------KLALRTLAEAYAKLNENK---K 134 (906)
T ss_pred hccccc--------------ch-hHHHHHHHHHHhhhhh-------------------hHHHHHHHHHHHHcCChH---H
Confidence 544433 22 2222222222222211 113444444454555555 4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc
Q 002199 601 ALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI 680 (954)
Q Consensus 601 AL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l 680 (954)
|+..|+++++.+|.++.++.++|..|... ++++|+.++.+|+.. |+..
T Consensus 135 a~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------------------------------~i~~ 182 (906)
T PRK14720 135 LKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------------------------------FIKK 182 (906)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-------------------------------HHhh
Confidence 55555555666677778888888888888 888888888877653 3445
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHH
Q 002199 681 GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAI 760 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~ 760 (954)
.+|..+..++.+.+..+|.+......+++.+......-+.+..+.-+-..|...++|++++.++..+|.++ |.+..
T Consensus 183 kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~----~~n~~ 258 (906)
T PRK14720 183 KQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD----NKNNK 258 (906)
T ss_pred hcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC----Ccchh
Confidence 57788888888888888887776555555544443333445555666788889999999999999999999 66777
Q ss_pred HHHHHHHHHHHh--------------------cCHHHHHHHHHHHHHhCCCC
Q 002199 761 CFCNRAAALQAL--------------------GQIADAIADCSLAMALDENY 792 (954)
Q Consensus 761 ~~~~lA~~y~~l--------------------g~~eeAi~~~ekAL~ldP~~ 792 (954)
+...++.||... ..+..|+..|++-+-.++.+
T Consensus 259 a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 259 AREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred hHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCCC
Confidence 888888888732 24677888888888777643
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-10 Score=120.73 Aligned_cols=123 Identities=23% Similarity=0.172 Sum_probs=113.3
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhH
Q 002199 680 IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAA 759 (954)
Q Consensus 680 lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a 759 (954)
.++.++++..++++++.+|.+.. .|..+|.+|...|++++|+..|++++.+. |.++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~--------------------~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~----P~~~ 107 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSE--------------------QWALLGEYYLWRNDYDNALLAYRQALQLR----GENA 107 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHH--------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCH
Confidence 56778999999999999998854 67889999999999999999999999999 8889
Q ss_pred HHHHHHHHHH-HHhcC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 760 ICFCNRAAAL-QALGQ--IADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 760 ~~~~~lA~~y-~~lg~--~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.++..+|.++ ...|+ +++|+..++++++++|+++.+++.+|.+++.+|+|++|+.+|++++++.|.+
T Consensus 108 ~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 108 ELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 9999999975 67787 5999999999999999999999999999999999999999999999997654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.5e-08 Score=116.20 Aligned_cols=266 Identities=14% Similarity=0.056 Sum_probs=183.3
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC-----CHHHHHHHHHH
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG-----RMREALEDCMM 517 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg-----~~eeAl~~~~k 517 (954)
...+....+-.+|..+++.|++++|...|...|..+|++. ..|..+..|..... ..+.-++.|+.
T Consensus 33 ~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~----------~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~ 102 (517)
T PF12569_consen 33 QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY----------DYYRGLEEALGLQLQLSDEDVEKLLELYDE 102 (517)
T ss_pred hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----------HHHHHHHHHHhhhcccccccHHHHHHHHHH
Confidence 4456677888999999999999999999999999999997 78888888874333 46667788888
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhc-hhhh----------hhHHHHHHHHHHHHHH---------
Q 002199 518 AATVDPNFLKVYMRAAKCHLVLGEIENAQHY-YHKLLNSA-AAVC----------LDRRITIEAADGLQKA--------- 576 (954)
Q Consensus 518 ALel~P~~~~a~~~LA~iy~~lG~~eeAl~~-yekaL~l~-P~~~----------~~~~~~~ea~~~l~~~--------- 576 (954)
..+..|....+. ++...+..-..|...+.. +...|... |... .-...+..+...+...
T Consensus 103 l~~~yp~s~~~~-rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~ 181 (517)
T PF12569_consen 103 LAEKYPRSDAPR-RLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSN 181 (517)
T ss_pred HHHhCccccchh-HhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCC
Confidence 877777643221 222222222233333322 23333221 1100 0001111111111111
Q ss_pred ----------HhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhh
Q 002199 577 ----------QKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVA 646 (954)
Q Consensus 577 ----------~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~ 646 (954)
..+..++.++..+...|+++ +|+.+++++|...|..+++|+.+|.+|-..|++.+|...++.+-.++
T Consensus 182 ~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~---~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD 258 (517)
T PF12569_consen 182 GDDEEKEPPSTLLWTLYFLAQHYDYLGDYE---KALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD 258 (517)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 01345677788888899999 89999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002199 647 EKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKS 726 (954)
Q Consensus 647 p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 726 (954)
..+-- .....+..+++.|+.++|...+....+-+-..... ....+-+.....
T Consensus 259 ~~DRy-----------------iNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~-----------L~~mQc~Wf~~e 310 (517)
T PF12569_consen 259 LADRY-----------------INSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSN-----------LNDMQCMWFETE 310 (517)
T ss_pred hhhHH-----------------HHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccC-----------HHHHHHHHHHHH
Confidence 86621 34456788899999999999988875544211111 112233445566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 727 AGNEAFKSGRYTEAVEHYTVALST 750 (954)
Q Consensus 727 lG~~~~~~g~~eeAi~~y~kAL~l 750 (954)
.|.+|.+.|++..|+..|..+++.
T Consensus 311 ~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 311 CAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 799999999999999999888765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-10 Score=113.32 Aligned_cols=102 Identities=12% Similarity=-0.009 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
++..+.++..|..++..|+|++|+..|+-+..++|.+. ..|+++|.|+..+|+|.+|+..|.+|+.++|+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~----------~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d 101 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF----------DYWFRLGECCQAQKHWGEAIYAYGRAAQIKID 101 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 77889999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSA 556 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~ 556 (954)
++.+++++|.|++.+|+.+.|+..|+.++...
T Consensus 102 dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 102 APQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999976
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.2e-10 Score=136.01 Aligned_cols=159 Identities=14% Similarity=0.064 Sum_probs=140.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFC 679 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~ 679 (954)
+++..+.......|.++.++.+||.+...+|++++|..+++.++++.|++.. ++..++.++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~-----------------a~~~~a~~L~~ 132 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE-----------------AFILMLRGVKR 132 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH-----------------HHHHHHHHHHH
Confidence 4455555555667889999999999999999999999999999999999866 77889999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhH
Q 002199 680 IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAA 759 (954)
Q Consensus 680 lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a 759 (954)
++++++|+..+++++..+|++.. .+..+|.++...|+|++|+.+|++++..+ |..+
T Consensus 133 ~~~~eeA~~~~~~~l~~~p~~~~--------------------~~~~~a~~l~~~g~~~~A~~~y~~~~~~~----p~~~ 188 (694)
T PRK15179 133 QQGIEAGRAEIELYFSGGSSSAR--------------------EILLEAKSWDEIGQSEQADACFERLSRQH----PEFE 188 (694)
T ss_pred hccHHHHHHHHHHHhhcCCCCHH--------------------HHHHHHHHHHHhcchHHHHHHHHHHHhcC----CCcH
Confidence 99999999999999999998754 66778999999999999999999999966 7889
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002199 760 ICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRR 799 (954)
Q Consensus 760 ~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~l 799 (954)
.++..+|.++..+|+.++|...|++|++....-...|.++
T Consensus 189 ~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 189 NGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 9999999999999999999999999999877666654443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.3e-09 Score=109.72 Aligned_cols=219 Identities=17% Similarity=0.133 Sum_probs=166.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002199 458 AYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHL 537 (954)
Q Consensus 458 ~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~ 537 (954)
+.+..+|.+||+++.--.+..|.+- ..+..+|.||+...+|..|..+|++.-.+.|......+..|+.++
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~r----------AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSR----------AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccch----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 3677899999999999999999876 789999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH---------------HHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 538 VLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG---------------LQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 538 ~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~---------------l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
..+.+..|+......... | ....+....++... +.....+...++.+..+++.|+++ .|+
T Consensus 90 ~A~i~ADALrV~~~~~D~-~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyE---aAv 164 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN-P-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYE---AAV 164 (459)
T ss_pred HhcccHHHHHHHHHhcCC-H-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHH---HHH
Confidence 999999999988766543 1 11111111111110 000112455667778888899999 899
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCc-------c-----hhhHHHHHHH
Q 002199 603 ERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGS-------V-----TYSLARLWRW 670 (954)
Q Consensus 603 ~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~-------~-----~~~~~~l~a~ 670 (954)
+.|+.+++.....+.+-+.+|.++++.++|..|+.+..++++..-.+.+.....-.. + ....+.+.++
T Consensus 165 qkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988887655443332211110 0 1122333466
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 002199 671 RLISKSYFCIGKLEVALDLLQ 691 (954)
Q Consensus 671 ~~Lg~~y~~lG~~eeAl~~l~ 691 (954)
.+.+.++++.++++.|.+.+.
T Consensus 245 NLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhh
Confidence 777889999999999887764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.1e-08 Score=108.61 Aligned_cols=304 Identities=12% Similarity=0.017 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
...+......|..-+..|+|.+|.....++-+..+.-. .+|..-|.+--++|+++.|-.++.++-+..++
T Consensus 81 rrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~----------l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~ 150 (400)
T COG3071 81 RRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPV----------LAYLLAAEAAQQRGDEDRANRYLAEAAELAGD 150 (400)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchH----------HHHHHHHHHHHhcccHHHHHHHHHHHhccCCC
Confidence 34556666778888888999999999988777665543 67777788888899999999999999888443
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 525 -FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 525 -~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
...+.+.++.++...|+++.|..-..++++..|.+... ..-....|+..|+|.....-+.
T Consensus 151 ~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~v-------------------lrLa~r~y~~~g~~~~ll~~l~ 211 (400)
T COG3071 151 DTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEV-------------------LRLALRAYIRLGAWQALLAILP 211 (400)
T ss_pred chHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHH-------------------HHHHHHHHHHhccHHHHHHHHH
Confidence 45678888999999999999999999999988865322 2222344556666664333333
Q ss_pred HHHHHHhcCCCCHHHHHHHHHH--HHHccCHHHHHH---HHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHH
Q 002199 604 RINEALSISSCSEKLLEMKADA--LYMLRKYEEAIQ---LCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYF 678 (954)
Q Consensus 604 ~l~kaL~~~P~~~~~~~~lA~~--~~~lg~~eeAi~---~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~ 678 (954)
.+.++-.+.+....-+...+.. +.+..+-..+.. .++..-..-..+.. .-..++.-+.
T Consensus 212 ~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~-----------------l~~~~a~~li 274 (400)
T COG3071 212 KLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPE-----------------LVVAYAERLI 274 (400)
T ss_pred HHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChh-----------------HHHHHHHHHH
Confidence 3333322332222222222221 111121111111 22221111111111 2234566788
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhh
Q 002199 679 CIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFA 758 (954)
Q Consensus 679 ~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~ 758 (954)
..|++++|.+..+.+++..-+..- .. -.-...-+++..=++..++.+... |..
T Consensus 275 ~l~~~~~A~~~i~~~Lk~~~D~~L-------------------~~----~~~~l~~~d~~~l~k~~e~~l~~h----~~~ 327 (400)
T COG3071 275 RLGDHDEAQEIIEDALKRQWDPRL-------------------CR----LIPRLRPGDPEPLIKAAEKWLKQH----PED 327 (400)
T ss_pred HcCChHHHHHHHHHHHHhccChhH-------------------HH----HHhhcCCCCchHHHHHHHHHHHhC----CCC
Confidence 999999999999999875432210 00 011235578888888899999888 667
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 759 AICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 759 a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
+.++..||.++++.+.|.+|..+|+.|+...|+ ...+..+|.++.++|+..+|.+.++.++.+
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 799999999999999999999999999999875 566788999999999999999999999955
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-10 Score=138.35 Aligned_cols=131 Identities=11% Similarity=-0.030 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
++++||.+...+|.+++|+..++.++++.|++.. ++.+++.++.+.+++++|+..+++++
T Consensus 88 ~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~--------------------a~~~~a~~L~~~~~~eeA~~~~~~~l 147 (694)
T PRK15179 88 FQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE--------------------AFILMLRGVKRQQGIEAGRAEIELYF 147 (694)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH--------------------HHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 7889999999999999999999999999998855 56678999999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 749 STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 749 ~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
..+ |.++..++.+|.++.++|++++|+..|++++..+|+++.++..+|.++..+|+.++|...|++++++.
T Consensus 148 ~~~----p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 148 SGG----SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred hcC----CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 999 89999999999999999999999999999999999999999999999999999999999999999994
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-10 Score=117.17 Aligned_cols=156 Identities=17% Similarity=0.157 Sum_probs=126.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002199 452 RLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMR 531 (954)
Q Consensus 452 ~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~ 531 (954)
..-+-.|+..|+++......++.. +|... +...++.++++..++++++.+|++..+|+.
T Consensus 20 ~~~~~~Y~~~g~~~~v~~~~~~~~--~~~~~-------------------~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~ 78 (198)
T PRK10370 20 FLCVGSYLLSPKWQAVRAEYQRLA--DPLHQ-------------------FASQQTPEAQLQALQDKIRANPQNSEQWAL 78 (198)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHh--Ccccc-------------------ccCchhHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 344567888899888654442221 22211 112677789999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHhcC--hHHHHHHHHHHHHH
Q 002199 532 AAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKL-LEQKT--SEAASSALERINEA 608 (954)
Q Consensus 532 LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~l-l~~g~--~~~a~eAL~~l~ka 608 (954)
+|.+|..+|++++|+..|++++.+.|++ ...+..++..+ ...|+ ++ +|+..++++
T Consensus 79 Lg~~~~~~g~~~~A~~a~~~Al~l~P~~-------------------~~~~~~lA~aL~~~~g~~~~~---~A~~~l~~a 136 (198)
T PRK10370 79 LGEYYLWRNDYDNALLAYRQALQLRGEN-------------------AELYAALATVLYYQAGQHMTP---QTREMIDKA 136 (198)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHhcCCCCcH---HHHHHHHHH
Confidence 9999999999999999999999999976 45567777765 45565 35 789999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhh
Q 002199 609 LSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNF 650 (954)
Q Consensus 609 L~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~ 650 (954)
+..+|.++.++..+|.+++.+|+|++|+..|++++++.|.+.
T Consensus 137 l~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 137 LALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 999999999999999999999999999999999999998763
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.1e-08 Score=108.68 Aligned_cols=293 Identities=15% Similarity=0.069 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
..+.+-|..-+.-|+|.+|.....++-+..+.-.-+|..-+.+-.++|+++.|-.++.++-+..++.
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~------------- 151 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD------------- 151 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc-------------
Confidence 4555667777888999999999999999888888899999999999999999999999999985543
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~ 652 (954)
.....+..+..++.++++. .|...+.+++...|.++.++....++|+..|+|.+...++.+.-+..--+.
T Consensus 152 -----~l~v~ltrarlll~~~d~~---aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~-- 221 (400)
T COG3071 152 -----TLAVELTRARLLLNRRDYP---AARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSD-- 221 (400)
T ss_pred -----hHHHHHHHHHHHHhCCCch---hHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCCh--
Confidence 2455778888999999999 677778899999999999999999999999999999988877655432111
Q ss_pred hhhccCcchhhHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 653 VLADNGSVTYSLARL--WRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE 730 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l--~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~ 730 (954)
..+.++ ++|..+ . ....+-..+.. +....+-.|.... .........+.-
T Consensus 222 ---------~e~~~le~~a~~gl--L-~q~~~~~~~~g-L~~~W~~~pr~lr----------------~~p~l~~~~a~~ 272 (400)
T COG3071 222 ---------EEAARLEQQAWEGL--L-QQARDDNGSEG-LKTWWKNQPRKLR----------------NDPELVVAYAER 272 (400)
T ss_pred ---------HHHHHHHHHHHHHH--H-HHHhccccchH-HHHHHHhccHHhh----------------cChhHHHHHHHH
Confidence 111111 122211 1 11111111111 1111111111100 011223346777
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 002199 731 AFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYT 810 (954)
Q Consensus 731 ~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~e 810 (954)
+...|++++|.+...++++..- ++.+... .-...-++...=++..++.+...|+++..++.||.++++.+.|.
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~-----D~~L~~~--~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~ 345 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQW-----DPRLCRL--IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWG 345 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhcc-----ChhHHHH--HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHH
Confidence 8899999999999999998752 2222222 22345688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhh
Q 002199 811 QAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEE 858 (954)
Q Consensus 811 eAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~ 858 (954)
+|..+|+.+++.-|...++ ..++.+...+++.+.
T Consensus 346 kA~~~leaAl~~~~s~~~~--------------~~la~~~~~~g~~~~ 379 (400)
T COG3071 346 KASEALEAALKLRPSASDY--------------AELADALDQLGEPEE 379 (400)
T ss_pred HHHHHHHHHHhcCCChhhH--------------HHHHHHHHHcCChHH
Confidence 9999999999996554443 466666655554433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.4e-10 Score=110.00 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=104.6
Q ss_pred HHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHH
Q 002199 688 DLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAA 767 (954)
Q Consensus 688 ~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~ 767 (954)
+.|++++.+.|.+. .....+|..++..|++++|+..|++++.++ |.+..++.++|.
T Consensus 4 ~~~~~~l~~~p~~~--------------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~la~ 59 (135)
T TIGR02552 4 ATLKDLLGLDSEQL--------------------EQIYALAYNLYQQGRYDEALKLFQLLAAYD----PYNSRYWLGLAA 59 (135)
T ss_pred hhHHHHHcCChhhH--------------------HHHHHHHHHHHHcccHHHHHHHHHHHHHhC----CCcHHHHHHHHH
Confidence 35677777766543 245668999999999999999999999998 778899999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 768 ALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 768 ~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
++..+|++++|+.+|++++.++|.++..++.+|.+|..+|++++|+..|++++++.|++..
T Consensus 60 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 60 CCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 9999999999999999999999999999999999999999999999999999999665543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.9e-08 Score=126.06 Aligned_cols=327 Identities=12% Similarity=-0.021 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGI-NSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN- 524 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL-~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~- 524 (954)
.+..+...|..+...|++..+...+..+- .....++ .+...++.+++..|++++|...+..+...-+.
T Consensus 373 ~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~----------~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~ 442 (903)
T PRK04841 373 LRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENP----------RLVLLQAWLAQSQHRYSEVNTLLARAEQELKDR 442 (903)
T ss_pred HHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCc----------chHHHHHHHHHHCCCHHHHHHHHHHHHHhcccc
Confidence 34445555666666677666555544320 0011112 34567788889999999999999988764321
Q ss_pred --------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChH
Q 002199 525 --------FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSE 596 (954)
Q Consensus 525 --------~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~ 596 (954)
...+...+|.++...|++++|...+++++...+.... .........++..+...|+++
T Consensus 443 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 443 NIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWY--------------YSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred CcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH--------------HHHHHHHHHHHHHHHHcCCHH
Confidence 2345566788999999999999999999985443200 001122345666777889998
Q ss_pred HHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHH
Q 002199 597 AASSALERINEALSISSC------SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRW 670 (954)
Q Consensus 597 ~a~eAL~~l~kaL~~~P~------~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~ 670 (954)
+|+..+.+++..... ....+..+|.+++..|++++|...+++++.+...... .......+.+
T Consensus 509 ---~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~ 576 (903)
T PRK04841 509 ---RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL---------EQLPMHEFLL 576 (903)
T ss_pred ---HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc---------ccccHHHHHH
Confidence 566666666654221 1346678899999999999999999999987654211 0001112245
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 671 RLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALST 750 (954)
Q Consensus 671 ~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l 750 (954)
..+|.+++..|++++|...+++++.+...... ...+..+..+|.++...|++++|...+.+++.+
T Consensus 577 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~---------------~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 577 RIRAQLLWEWARLDEAEQCARKGLEVLSNYQP---------------QQQLQCLAMLAKISLARGDLDNARRYLNRLENL 641 (903)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc---------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999876432211 011234556888999999999999999999876
Q ss_pred ccCCchh-h--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 751 NIESRPF-A--AICFCNRAAALQALGQIADAIADCSLAMALDENYT----KAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 751 ~~~~~p~-~--a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~----~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
....... . ..........+...|+.+.|...+.......+... ..+..++.++...|++++|+..|++++.+.
T Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~ 721 (903)
T PRK04841 642 LGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENA 721 (903)
T ss_pred HhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4321110 1 11111123455567899999999877654332222 225678999999999999999999999885
Q ss_pred h
Q 002199 824 E 824 (954)
Q Consensus 824 p 824 (954)
.
T Consensus 722 ~ 722 (903)
T PRK04841 722 R 722 (903)
T ss_pred H
Confidence 3
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-10 Score=129.77 Aligned_cols=101 Identities=28% Similarity=0.401 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVY 529 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~ 529 (954)
.+...|..++..|+|++|+.+|++||+++|.+. .+|+++|.+|+.+|++++|+.++++++.++|.++.+|
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~----------~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~ 73 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA----------ELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAY 73 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHH
Confidence 477889999999999999999999999999997 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 530 MRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 530 ~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
+++|.+|+.+|+|++|+..|++++.++|.+.
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~ 104 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLAPGDS 104 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999999999863
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.3e-10 Score=108.68 Aligned_cols=107 Identities=23% Similarity=0.252 Sum_probs=102.2
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..|.....+..+|..++..|++++|+..|++++..+|.+. .++.++|.+++.+|++++|+..+++++.++
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS----------RYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4466778899999999999999999999999999999987 999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
|+++..++.+|.+|..+|++++|+..|+++++++|++
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999976
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.9e-10 Score=112.18 Aligned_cols=112 Identities=34% Similarity=0.479 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCc-hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Q 002199 718 VRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESR-PFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAV 796 (954)
Q Consensus 718 ~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~-p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al 796 (954)
...+..+...|+.+|..|+|++|..-|..||.+.|... .....+|.|+|.++++++.++.||..|.++|+++|.+..|+
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 44556677789999999999999999999999987443 35778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHH
Q 002199 797 SRRAALHEMIRDYTQAASDLQRLVSILENQSAE 829 (954)
Q Consensus 797 ~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~ 829 (954)
.++|.+|.++..|++|+.+|.++++++|...+.
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 999999999999999999999999998876543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-09 Score=126.97 Aligned_cols=224 Identities=16% Similarity=0.100 Sum_probs=187.1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
|........+|.++..+|-...|+..|++.-. |-..+..|...|+.. +|-
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------------------------w~~vi~CY~~lg~~~---kae 444 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------------------------WDPVILCYLLLGQHG---KAE 444 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------------------------HHHHHHHHHHhcccc---hHH
Confidence 34456677899999999999999999998544 333455566666666 666
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC
Q 002199 603 ERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGK 682 (954)
Q Consensus 603 ~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~ 682 (954)
....+-++ .|.++.+|..+|++....--|++|.++.+..-.. +...+|...+..++
T Consensus 445 ei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-----------------------A~r~~~~~~~~~~~ 500 (777)
T KOG1128|consen 445 EINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-----------------------AQRSLALLILSNKD 500 (777)
T ss_pred HHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-----------------------HHHhhccccccchh
Confidence 66667777 7778889999998888777777777766553322 33445666677899
Q ss_pred HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHH
Q 002199 683 LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICF 762 (954)
Q Consensus 683 ~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~ 762 (954)
|+++..+++..++++|-.. ..|+.+|.++.+.++++.|.++|..++.++ |.+..+|
T Consensus 501 fs~~~~hle~sl~~nplq~--------------------~~wf~~G~~ALqlek~q~av~aF~rcvtL~----Pd~~eaW 556 (777)
T KOG1128|consen 501 FSEADKHLERSLEINPLQL--------------------GTWFGLGCAALQLEKEQAAVKAFHRCVTLE----PDNAEAW 556 (777)
T ss_pred HHHHHHHHHHHhhcCccch--------------------hHHHhccHHHHHHhhhHHHHHHHHHHhhcC----CCchhhh
Confidence 9999999999999988553 378889999999999999999999999999 8999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 763 CNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 763 ~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
+|++.+|..+++-.+|...+.+|++-+-.+...|.+.-.+....|.+++|++.|.+.+.+-.
T Consensus 557 nNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 557 NNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred hhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999988999999999999999999999999999998843
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.1e-10 Score=124.06 Aligned_cols=126 Identities=25% Similarity=0.354 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC-----------chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES-----------RPFAAICFCNRAAALQALGQIADAIADCSLAMALD 789 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~-----------~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld 789 (954)
+......|+.|++.|+|..|+..|++|+..-... ......+++|+|.||+++++|.+|+..|.++|+++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 3455668999999999999999999998763210 12345689999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhhh
Q 002199 790 ENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEED 859 (954)
Q Consensus 790 P~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~a 859 (954)
|+|..++|++|.+++.+++|+.|+.+|++++++.|.+ ..+..+|..+.++.++.+..
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-------------ka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-------------KAARAELIKLKQKIREYEEK 344 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-------------HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999995554 44456777777666555443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.1e-10 Score=107.99 Aligned_cols=101 Identities=13% Similarity=0.057 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSR 798 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~ 798 (954)
..+..++.+|..++..|++++|+..|+.+..++ |.+...|++||.|+..+|+|.+||..|.+|+.++|+++.++++
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D----p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ 108 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD----AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 445677789999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 799 RAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 799 lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
+|.+++.+|+.+.|++.|+.++.+-
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999995
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.1e-08 Score=103.02 Aligned_cols=340 Identities=14% Similarity=0.080 Sum_probs=207.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------
Q 002199 452 RLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT----------- 520 (954)
Q Consensus 452 ~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe----------- 520 (954)
.-+|.++|..|+|++|+..|+-+.+.+.-+. .++.++|.|++-+|.|.+|.....+|-.
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~----------el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhl 130 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPA----------ELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHL 130 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCc----------ccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 3468899999999999999999888554443 8999999999999999999887766522
Q ss_pred ---cCC------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHH---------HHHHHH-H-
Q 002199 521 ---VDP------------NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITI---------EAADGL-Q- 574 (954)
Q Consensus 521 ---l~P------------~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~---------ea~~~l-~- 574 (954)
++. +..+-.+.||.+++..-.|++|+..|.++|.-+|+...-.-.++ .....+ .
T Consensus 131 ahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 131 AHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 111 12344566788888888999999999999998886421111110 000000 0
Q ss_pred ---HHHh--HHHHHHHHHHHHH--hcChHHHH------------------------------HHHHHHHHHHhcCCCCHH
Q 002199 575 ---KAQK--VTEYINCSGKLLE--QKTSEAAS------------------------------SALERINEALSISSCSEK 617 (954)
Q Consensus 575 ---~~~~--~~~~l~~a~~ll~--~g~~~~a~------------------------------eAL~~l~kaL~~~P~~~~ 617 (954)
.... +...+ ++..+++ .|+..+.+ .|++.+--.+.+ -|+
T Consensus 211 YL~q~pdStiA~NL-kacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~---IPE 286 (557)
T KOG3785|consen 211 YLRQFPDSTIAKNL-KACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH---IPE 286 (557)
T ss_pred HHHhCCCcHHHHHH-HHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh---ChH
Confidence 0000 00000 0111110 11111000 222222222222 256
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---
Q 002199 618 LLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLE--- 694 (954)
Q Consensus 618 ~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal--- 694 (954)
+..+++..|+.+++..+|+.+++..--..|. -|...|.++..+|+-....++++-+.
T Consensus 287 ARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~--------------------EyilKgvv~aalGQe~gSreHlKiAqqff 346 (557)
T KOG3785|consen 287 ARLNLIIYYLNQNDVQEAISLCKDLDPTTPY--------------------EYILKGVVFAALGQETGSREHLKIAQQFF 346 (557)
T ss_pred hhhhheeeecccccHHHHHHHHhhcCCCChH--------------------HHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Confidence 8888888999999999999988765444432 35567888887777544444443332
Q ss_pred hhCCCCcc-----hhhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHhhccCC
Q 002199 695 QVGSISDR-----YGSEILESSMSLAGTVRALLH---------------HKSAGNEAFKSGRYTEAVEHYTVALSTNIES 754 (954)
Q Consensus 695 ~l~p~~~~-----~~~~~l~~~~~l~~~~~~~~~---------------~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~ 754 (954)
++...... ..........-+......+.. ..++++++...|.|.+|.+.|-++-....
T Consensus 347 qlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i-- 424 (557)
T KOG3785|consen 347 QLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI-- 424 (557)
T ss_pred HHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh--
Confidence 22111100 011122222222223322222 24678889999999999999966543321
Q ss_pred chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHH
Q 002199 755 RPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYT-KAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEK 830 (954)
Q Consensus 755 ~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~-~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~ 830 (954)
.+.......+|.||...+..+-|-..+-+. -.|... ..+-.+|...++.+++-=|.+.|..+-.++|.-..|.
T Consensus 425 -kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWe 498 (557)
T KOG3785|consen 425 -KNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWE 498 (557)
T ss_pred -hhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccC
Confidence 345556677899999999999998877542 123333 3344557888888998888899988888888766653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-07 Score=101.46 Aligned_cols=329 Identities=13% Similarity=0.117 Sum_probs=214.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN--- 524 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~--- 524 (954)
...|...+..-++.++..-|..++.+|+.+.|.-. .+|+..-.+-..+|+...|.+.|++-++..|+
T Consensus 107 itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd----------qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqa 176 (677)
T KOG1915|consen 107 ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD----------QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQA 176 (677)
T ss_pred chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH----------HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHH
Confidence 34555555556666666666666666666666543 55555555555555555555555555554443
Q ss_pred -----------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHH------HHHH
Q 002199 525 -----------------------------FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRI------TIEA 569 (954)
Q Consensus 525 -----------------------------~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~------~~ea 569 (954)
.+..|+..|..-...|...-|...|++|++.-.+....... ..+.
T Consensus 177 W~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~ 256 (677)
T KOG1915|consen 177 WLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEER 256 (677)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 23456666777777788888888888777654332111100 0000
Q ss_pred HHHHHHHHh--------------------------------------------------------HHHHHHHHHHHHHhc
Q 002199 570 ADGLQKAQK--------------------------------------------------------VTEYINCSGKLLEQK 593 (954)
Q Consensus 570 ~~~l~~~~~--------------------------------------------------------~~~~l~~a~~ll~~g 593 (954)
.....++.- ...|+......-..|
T Consensus 257 qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 257 QKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVG 336 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcC
Confidence 000000000 233333333333444
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHH---HHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhh
Q 002199 594 TSEAASSALERINEALSISSCSEK-------LLEMKADAL---YMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYS 663 (954)
Q Consensus 594 ~~~~a~eAL~~l~kaL~~~P~~~~-------~~~~lA~~~---~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~ 663 (954)
+.+ ...+.|++|+..-|-... +|+.+-.++ +...+.+.+.++|+.+|++-|.. ...
T Consensus 337 ~~~---~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk-----------kFt 402 (677)
T KOG1915|consen 337 DKD---RIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK-----------KFT 402 (677)
T ss_pred CHH---HHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc-----------cch
Confidence 555 667788999887664322 222222222 34678999999999999999865 234
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 002199 664 LARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEH 743 (954)
Q Consensus 664 ~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~ 743 (954)
++. .|++.|...+++-++..|...+-.|+-..|.+.. +...-.+-.+.++++....+
T Consensus 403 FaK--iWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl---------------------Fk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 403 FAK--IWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL---------------------FKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHH--HHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH---------------------HHHHHHHHHHHhhHHHHHHH
Confidence 555 5667788999999999999999999988875532 11122334567899999999
Q ss_pred HHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhcCHHHHHHHHHHHHH
Q 002199 744 YTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAAL--HEMIRDYTQAASDLQRLVS 821 (954)
Q Consensus 744 y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~l--y~~lg~~eeAi~~~ekAL~ 821 (954)
|++-|... |.+..+|...|.+-..+|+.+.|...|+.|+....-+..-++..+.+ -...|.++.|...|+++|+
T Consensus 460 YEkfle~~----Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 460 YEKFLEFS----PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHhcC----hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 99999998 88999999999999999999999999999997654454444444443 4677999999999999999
Q ss_pred HhhhhH
Q 002199 822 ILENQS 827 (954)
Q Consensus 822 l~p~~~ 827 (954)
..+.-.
T Consensus 536 rt~h~k 541 (677)
T KOG1915|consen 536 RTQHVK 541 (677)
T ss_pred hcccch
Confidence 855433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.6e-09 Score=120.73 Aligned_cols=224 Identities=13% Similarity=0.067 Sum_probs=175.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
.|.....-..+|..++..|-...|+..|++. ..|-....||..+|+..+|.....+-++ .|
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl------------------emw~~vi~CY~~lg~~~kaeei~~q~le-k~ 454 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL------------------EMWDPVILCYLLLGQHGKAEEINRQELE-KD 454 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH------------------HHHHHHHHHHHHhcccchHHHHHHHHhc-CC
Confidence 3445556678889999999999999999874 5677788899999999999999999888 66
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 524 NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 524 ~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
.++..|..||.+....--|++|.++.+.... .+....+...+..++|. ++..
T Consensus 455 ~d~~lyc~LGDv~~d~s~yEkawElsn~~sa-------------------------rA~r~~~~~~~~~~~fs---~~~~ 506 (777)
T KOG1128|consen 455 PDPRLYCLLGDVLHDPSLYEKAWELSNYISA-------------------------RAQRSLALLILSNKDFS---EADK 506 (777)
T ss_pred CcchhHHHhhhhccChHHHHHHHHHhhhhhH-------------------------HHHHhhccccccchhHH---HHHH
Confidence 6777888887777766666666665544322 22334444455567777 7888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCH
Q 002199 604 RINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKL 683 (954)
Q Consensus 604 ~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~ 683 (954)
+++..++++|-....|+.+|.+.+++++++.|...|..++.+.|++.. +|.+++.+|+..++-
T Consensus 507 hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~e-----------------aWnNls~ayi~~~~k 569 (777)
T KOG1128|consen 507 HLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAE-----------------AWNNLSTAYIRLKKK 569 (777)
T ss_pred HHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchh-----------------hhhhhhHHHHHHhhh
Confidence 899999999999999999999999999999999999999999998866 788999999999999
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 684 EVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 684 eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~ 751 (954)
.+|...++++++.+-.+.. .|-+.-.+..+.|.+++|+..|.+.+.+.
T Consensus 570 ~ra~~~l~EAlKcn~~~w~--------------------iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 570 KRAFRKLKEALKCNYQHWQ--------------------IWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHHHhhcCCCCCe--------------------eeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999999888755444 33344556678889999999999888775
|
|
| >KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.3e-11 Score=129.60 Aligned_cols=66 Identities=38% Similarity=0.529 Sum_probs=59.9
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh-hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY-DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~-~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
...||.+|+|.++|++.|||||||+||++|||||++.. +.+.+|..||++|++ |++|++||.||..
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd-~ekr~~yD~~g~~ 69 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSD-PEKREIYDQYGEE 69 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcC-HHHHHHHHhhhhh
Confidence 35699999999999999999999999999999999874 456778889999997 9999999999977
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.6e-10 Score=125.05 Aligned_cols=102 Identities=28% Similarity=0.398 Sum_probs=95.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
+...|..++..|+|++|+.+|++||.++ |.++.+|+++|.+|..+|++++|+.++++++.++|.++.+|+.+|.+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~----P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD----PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 4457899999999999999999999999 778899999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHhhhhHHH
Q 002199 804 EMIRDYTQAASDLQRLVSILENQSAE 829 (954)
Q Consensus 804 ~~lg~~eeAi~~~ekAL~l~p~~~~~ 829 (954)
+.+|+|++|+.+|++++++.|++...
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999997665543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5e-08 Score=101.12 Aligned_cols=174 Identities=18% Similarity=0.082 Sum_probs=120.0
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHH
Q 002199 586 SGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLA 665 (954)
Q Consensus 586 a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~ 665 (954)
....+..++.+ -|..++.+.....|.+..+....|..+...|.|++|+++|+..|+-+|.+..
T Consensus 59 ~IAAld~~~~~---lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v-------------- 121 (289)
T KOG3060|consen 59 FIAALDTGRDD---LAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTV-------------- 121 (289)
T ss_pred HHHHHHhcchH---HHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhH--------------
Confidence 33444555666 3444444544455777777778888888888888888888888887777644
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002199 666 RLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYT 745 (954)
Q Consensus 666 ~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~ 745 (954)
++-..-.+...+|+.-+|++.+...++..+.+. .+|..++.+|+..++|++|.-+|+
T Consensus 122 ---~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~--------------------EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 122 ---IRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQ--------------------EAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred ---HHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcH--------------------HHHHHHHHHHHhHhHHHHHHHHHH
Confidence 233333445567777777777777777665553 366667788888888888888888
Q ss_pred HHHhhccCCchhhHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 746 VALSTNIESRPFAAICFCNRAAALQALG---QIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 746 kAL~l~~~~~p~~a~~~~~lA~~y~~lg---~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
+.+-++ |.++.++..+|.+++-+| ++.-|..+|.++++++|.+..+++.+-.+.
T Consensus 179 E~ll~~----P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 179 ELLLIQ----PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHcC----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 887777 777777777777777665 567777788888888877777776654443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.7e-09 Score=108.08 Aligned_cols=177 Identities=17% Similarity=0.126 Sum_probs=157.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc
Q 002199 601 ALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI 680 (954)
Q Consensus 601 AL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l 680 (954)
++..+-+....+|.+..+ ..++..+...|+-+.+..+..+++...|.+.. .+..+|...++.
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~-----------------ll~~~gk~~~~~ 113 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRE-----------------LLAAQGKNQIRN 113 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHH-----------------HHHHHHHHHHHh
Confidence 455566677789999999 99999999999999999999998888777643 223379999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHH
Q 002199 681 GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAI 760 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~ 760 (954)
|++.+|+..++++..+.|.+.. .|..+|.+|.+.|++++|...|.+++++. +..+.
T Consensus 114 g~~~~A~~~~rkA~~l~p~d~~--------------------~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~----~~~p~ 169 (257)
T COG5010 114 GNFGEAVSVLRKAARLAPTDWE--------------------AWNLLGAALDQLGRFDEARRAYRQALELA----PNEPS 169 (257)
T ss_pred cchHHHHHHHHHHhccCCCChh--------------------hhhHHHHHHHHccChhHHHHHHHHHHHhc----cCCch
Confidence 9999999999999999998866 56679999999999999999999999999 88899
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002199 761 CFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRL 819 (954)
Q Consensus 761 ~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekA 819 (954)
++.|+|..|+-.|+++.|..++..+...-+.+..+..+++.+....|++++|...-.+-
T Consensus 170 ~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 170 IANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 99999999999999999999999999988889999999999999999999998765443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-08 Score=104.26 Aligned_cols=177 Identities=18% Similarity=0.085 Sum_probs=161.5
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..++.-..+-+...+.+..|+.+.|..|+++.-..-|+.. .+....|..+...|+|++|+++|+..|+-+
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~----------RV~~lkam~lEa~~~~~~A~e~y~~lL~dd 116 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK----------RVGKLKAMLLEATGNYKEAIEYYESLLEDD 116 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh----------hHHHHHHHHHHHhhchhhHHHHHHHHhccC
Confidence 4456666777788888999999999999999998889987 788889999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
|.+..++-+.--+...+|+.-+|++.+...++..+.+ .+.|..++..|+..++|+ +|.
T Consensus 117 pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D-------------------~EAW~eLaeiY~~~~~f~---kA~ 174 (289)
T KOG3060|consen 117 PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND-------------------QEAWHELAEIYLSEGDFE---KAA 174 (289)
T ss_pred cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc-------------------HHHHHHHHHHHHhHhHHH---HHH
Confidence 9999999999999999999999999999999988765 678999999999999999 899
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHhchhhhhhhh
Q 002199 603 ERINEALSISSCSEKLLEMKADALYMLR---KYEEAIQLCEHTLPVAEKNFA 651 (954)
Q Consensus 603 ~~l~kaL~~~P~~~~~~~~lA~~~~~lg---~~eeAi~~~ekaL~l~p~~~~ 651 (954)
-++++.+-+.|.++.++..+|++++-+| +++-|..+|.++++++|.+..
T Consensus 175 fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 175 FCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLR 226 (289)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHH
Confidence 9999999999999999999999999887 677899999999999997643
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.8e-08 Score=106.86 Aligned_cols=181 Identities=11% Similarity=0.028 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF- 525 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~- 525 (954)
.++.++..|..++..|+|++|+..|++++...|..+ ....+.+.+|.+|+++++|++|+..+++.++++|++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~-------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP-------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 456688999999999999999999999999999875 234567899999999999999999999999999876
Q ss_pred --HHHHHHHHHHHHHcCC------------------HHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHH--HhHHHHH
Q 002199 526 --LKVYMRAAKCHLVLGE------------------IENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKA--QKVTEYI 583 (954)
Q Consensus 526 --~~a~~~LA~iy~~lG~------------------~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~--~~~~~~l 583 (954)
..+++.+|.++..+++ ..+|+..|++.++..|+..... ++...+..+ .....-+
T Consensus 104 ~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~----~A~~rl~~l~~~la~~e~ 179 (243)
T PRK10866 104 NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT----DATKRLVFLKDRLAKYEL 179 (243)
T ss_pred chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH----HHHHHHHHHHHHHHHHHH
Confidence 6789999998766641 3578899999999999764432 222222222 1234455
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHH
Q 002199 584 NCSGKLLEQKTSEAASSALERINEALSISSCS---EKLLEMKADALYMLRKYEEAIQLCEH 641 (954)
Q Consensus 584 ~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~---~~~~~~lA~~~~~lg~~eeAi~~~ek 641 (954)
..+.-|+..+.|. .|+..++.++...|+. .+++..++.+|..+|..++|......
T Consensus 180 ~ia~~Y~~~~~y~---AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 180 SVAEYYTKRGAYV---AVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHcCchH---HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 7778888999998 6888888888877754 78899999999999999999876654
|
|
| >PRK14288 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.9e-11 Score=134.89 Aligned_cols=65 Identities=34% Similarity=0.461 Sum_probs=58.4
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC-h---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE-Y---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~-~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||.++|+..|||+|||+||++||||++.. . ..+.+|.+||++|++ +.+|+.||+||..
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd-~~kR~~YD~~G~~ 71 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSD-EKKRALYDRYGKK 71 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhcc-HHHHHHHHHhccc
Confidence 689999999999999999999999999999999873 2 445678899999997 9999999999964
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.3e-10 Score=121.98 Aligned_cols=253 Identities=17% Similarity=0.176 Sum_probs=170.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHh
Q 002199 500 ATRISLGRMREALEDCMMAATVDP-NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQK 578 (954)
Q Consensus 500 ~~y~~lg~~eeAl~~~~kALel~P-~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~ 578 (954)
.-++.+|+|..++..+. ....+| ......+.+.++|+.+|+++..+..+...- .|..
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~~l------------------- 66 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS--SPEL------------------- 66 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SCCC-------------------
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC--ChhH-------------------
Confidence 34567899999998777 334444 346677888999999999987765553311 2221
Q ss_pred HHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhh
Q 002199 579 VTEYINCSGKLLEQ-KTSEAASSALERINEALSIS--SCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLA 655 (954)
Q Consensus 579 ~~~~l~~a~~ll~~-g~~~~a~eAL~~l~kaL~~~--P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~ 655 (954)
.....++ .++.. .+.+ .++..+...+... +.++.+....|.++...|++++|+..+.+.-.+ +
T Consensus 67 -~av~~la-~y~~~~~~~e---~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~~l-----E---- 132 (290)
T PF04733_consen 67 -QAVRLLA-EYLSSPSDKE---SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGGSL-----E---- 132 (290)
T ss_dssp -HHHHHHH-HHHCTSTTHH---CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTTCH-----H----
T ss_pred -HHHHHHH-HHHhCccchH---HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccCcc-----c----
Confidence 1111111 22221 1222 4555555544332 235667777888999999999999988765211 1
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002199 656 DNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSG 735 (954)
Q Consensus 656 ~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g 735 (954)
....+-.+|+.+++++.|.+.++.+.+.+.+.. ......+++.+..|
T Consensus 133 -------------~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~--------------------l~qLa~awv~l~~g 179 (290)
T PF04733_consen 133 -------------LLALAVQILLKMNRPDLAEKELKNMQQIDEDSI--------------------LTQLAEAWVNLATG 179 (290)
T ss_dssp -------------HHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH--------------------HHHHHHHHHHHHHT
T ss_pred -------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH--------------------HHHHHHHHHHHHhC
Confidence 234567789999999999999999877654321 11112333444444
Q ss_pred --CHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCH-HHH
Q 002199 736 --RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDY-TQA 812 (954)
Q Consensus 736 --~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~-eeA 812 (954)
.+.+|.-.|++..... +..+.++..+|.|++.+|+|++|...+.+++..+|+++.++.+++.+...+|+. +.+
T Consensus 180 ~e~~~~A~y~f~El~~~~----~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDKF----GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp TTCCCHHHHHHHHHHCCS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred chhHHHHHHHHHHHHhcc----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHH
Confidence 6999999999977665 567788999999999999999999999999999999999999999999999998 566
Q ss_pred HHHHHHHHHHhhh
Q 002199 813 ASDLQRLVSILEN 825 (954)
Q Consensus 813 i~~~ekAL~l~p~ 825 (954)
.+++.++....|+
T Consensus 256 ~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 256 ERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHHCHHHTTT
T ss_pred HHHHHHHHHhCCC
Confidence 6777777777443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.2e-08 Score=104.88 Aligned_cols=334 Identities=14% Similarity=0.092 Sum_probs=240.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cC
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT----VD 522 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe----l~ 522 (954)
.+....+.|..+|...++.+|+..+.+.|....+.. .....|..+..++..+|.|++++...--.+. .+
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~-------~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ 77 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLM-------GRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELE 77 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHH-------HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445667889999999999999999999998654422 2346777788899999999998876544333 32
Q ss_pred CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHH
Q 002199 523 PN--FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASS 600 (954)
Q Consensus 523 P~--~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~e 600 (954)
.. ...++.++++.+..+.++.+++.+-...+.+-........ -...+..+..++..+.++ +
T Consensus 78 ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~--------------gq~~l~~~~Ahlgls~fq---~ 140 (518)
T KOG1941|consen 78 DSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLG--------------GQVSLSMGNAHLGLSVFQ---K 140 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccc--------------chhhhhHHHHhhhHHHHH---H
Confidence 22 2578999999999999999999998888876432210000 122344566666666666 7
Q ss_pred HHHHHHHHHhcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHH
Q 002199 601 ALERINEALSISSCS------EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLIS 674 (954)
Q Consensus 601 AL~~l~kaL~~~P~~------~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg 674 (954)
+++.|+.++.+.... ..++..+|.++..+.++++|+-+..+++++...... ..+ ..-.+..+++.++
T Consensus 141 ~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l------~d~-~~kyr~~~lyhma 213 (518)
T KOG1941|consen 141 ALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL------KDW-SLKYRAMSLYHMA 213 (518)
T ss_pred HHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc------Cch-hHHHHHHHHHHHH
Confidence 888888888764322 457888999999999999999999999887653210 001 1122334678899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--
Q 002199 675 KSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI-- 752 (954)
Q Consensus 675 ~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~-- 752 (954)
..|..+|.+-.|.++.+++.++.-.. ......+..+.-+|++|...|+.+.|..-|++|.....
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~--------------Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~ 279 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQH--------------GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL 279 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHh--------------CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh
Confidence 99999999999999999998763222 22233344566789999999999999999999987642
Q ss_pred CCchhhHHHHHHHHHHHHHhcCHHH-----HHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 753 ESRPFAAICFCNRAAALQALGQIAD-----AIADCSLAMALDEN------YTKAVSRRAALHEMIRDYTQAASDLQRLVS 821 (954)
Q Consensus 753 ~~~p~~a~~~~~lA~~y~~lg~~ee-----Ai~~~ekAL~ldP~------~~~al~~lA~ly~~lg~~eeAi~~~ekAL~ 821 (954)
.+.-....++...|.++....-..+ |++.-++++++... ..+.+..++.+|..+|.-++=...+.++-+
T Consensus 280 gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 280 GDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 2223445566667777766554444 88888888877543 246788899999999998888888887776
Q ss_pred Hhhh
Q 002199 822 ILEN 825 (954)
Q Consensus 822 l~p~ 825 (954)
...+
T Consensus 360 ~~~e 363 (518)
T KOG1941|consen 360 CVEE 363 (518)
T ss_pred HHHH
Confidence 6543
|
|
| >PTZ00037 DnaJ_C chaperone protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.3e-11 Score=134.59 Aligned_cols=66 Identities=35% Similarity=0.522 Sum_probs=61.9
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||.++++..|||+|||+||++|||||+.+...+.++.+||++|++ +.+|+.||.||..
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD-~~kR~~YD~~G~~ 92 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSD-PEKRKIYDEYGEE 92 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhcc-HHHHHHHhhhcch
Confidence 56999999999999999999999999999999999877888999999999997 9999999999864
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.1e-08 Score=103.76 Aligned_cols=177 Identities=15% Similarity=0.074 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF 525 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~ 525 (954)
..++.++..|..++..|+|.+|+..|++++...|..+ ....+.+.+|.+++..|+|.+|+..+++.+...|+.
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-------~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP-------YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST-------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 3567899999999999999999999999999999865 335889999999999999999999999999999876
Q ss_pred ---HHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHH--HhHHHHHHHHHHH
Q 002199 526 ---LKVYMRAAKCHLVLG-----------EIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKA--QKVTEYINCSGKL 589 (954)
Q Consensus 526 ---~~a~~~LA~iy~~lG-----------~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~--~~~~~~l~~a~~l 589 (954)
..+++.+|.+++.+. ...+|+..|+..+...|+...... +...+..+ .....-+..|..+
T Consensus 76 ~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~----A~~~l~~l~~~la~~e~~ia~~Y 151 (203)
T PF13525_consen 76 PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE----AKKRLAELRNRLAEHELYIARFY 151 (203)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999987654 345899999999999998754332 22222222 2244556678888
Q ss_pred HHhcChHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHH
Q 002199 590 LEQKTSEAASSALERINEALSISSCS---EKLLEMKADALYMLRKYEEAI 636 (954)
Q Consensus 590 l~~g~~~~a~eAL~~l~kaL~~~P~~---~~~~~~lA~~~~~lg~~eeAi 636 (954)
+..+.|. .|+..++.++...|+. ..++..++.+|..+|..+.|.
T Consensus 152 ~~~~~y~---aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 152 YKRGKYK---AAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HCTT-HH---HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHcccHH---HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999 7899999999999887 567888999999999988543
|
|
| >PRK14296 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-10 Score=130.86 Aligned_cols=66 Identities=32% Similarity=0.492 Sum_probs=58.8
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh---HHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD---QEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~---~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||+++++..|||+|||+||++||||++.... .+.++.+||++|++ +++|+.||+||..
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD-~~KR~~YD~~G~~ 71 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLD-KDKRKQYDQFGHA 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcC-HHHhhhhhhccch
Confidence 369999999999999999999999999999999986544 34578889999997 9999999999864
|
|
| >PRK14279 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-10 Score=131.58 Aligned_cols=65 Identities=31% Similarity=0.407 Sum_probs=58.1
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGY 930 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~ 930 (954)
..|||++|||.++++..|||+|||+||++||||++... ..+.+|.+||++|++ +++|+.||+||.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD-~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSD-PAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcc-hhhhhHHHHhhh
Confidence 46999999999999999999999999999999998632 445678899999997 999999999974
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-08 Score=104.17 Aligned_cols=158 Identities=13% Similarity=0.137 Sum_probs=141.3
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchh
Q 002199 583 INCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTY 662 (954)
Q Consensus 583 l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~ 662 (954)
+..+..+...|+-+ .++.+..+++...|.+..++..+|..++..|+|.+|+..++++..+.|++..
T Consensus 70 ~~~a~a~~~~G~a~---~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~----------- 135 (257)
T COG5010 70 AKLATALYLRGDAD---SSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE----------- 135 (257)
T ss_pred HHHHHHHHhccccc---chHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh-----------
Confidence 56667777777766 6777778888889999999999999999999999999999999999999866
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 002199 663 SLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVE 742 (954)
Q Consensus 663 ~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~ 742 (954)
.|..+|.+|.+.|++++|...|.+++++.|..+. .+.++|..|+-.|+++.|..
T Consensus 136 ------~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~--------------------~~nNlgms~~L~gd~~~A~~ 189 (257)
T COG5010 136 ------AWNLLGAALDQLGRFDEARRAYRQALELAPNEPS--------------------IANNLGMSLLLRGDLEDAET 189 (257)
T ss_pred ------hhhHHHHHHHHccChhHHHHHHHHHHHhccCCch--------------------hhhhHHHHHHHcCCHHHHHH
Confidence 7889999999999999999999999999998876 56789999999999999999
Q ss_pred HHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 743 HYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSL 784 (954)
Q Consensus 743 ~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ek 784 (954)
++..+.... +.+..+..|++.+.-.+|++.+|.....+
T Consensus 190 lll~a~l~~----~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 190 LLLPAYLSP----AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHhCC----CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 999998775 66888999999999999999999887665
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-08 Score=112.43 Aligned_cols=261 Identities=16% Similarity=0.095 Sum_probs=176.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002199 456 NQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKC 535 (954)
Q Consensus 456 ~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~i 535 (954)
..+|-.|+|..++..++ .....+.. .......+..+|+.+|++...+..+...- .| ...+...++..
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~---------~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--~~-~l~av~~la~y 75 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPEN---------KLERDFYQYRSYIALGQYDSVLSEIKKSS--SP-ELQAVRLLAEY 75 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHH---------HHHHHHHHHHHHHHTT-HHHHHHHS-TTS--SC-CCHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchh---------HHHHHHHHHHHHHHcCChhHHHHHhccCC--Ch-hHHHHHHHHHH
Confidence 45678899999998777 22333322 24677888999999999998776654422 33 34566666766
Q ss_pred HHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCC
Q 002199 536 HLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCS 615 (954)
Q Consensus 536 y~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~ 615 (954)
+....+.+.++..++..+...... . .....+..|..++..|+++ +|+..+.+. .+
T Consensus 76 ~~~~~~~e~~l~~l~~~~~~~~~~-~----------------~~~~~~~~A~i~~~~~~~~---~AL~~l~~~-----~~ 130 (290)
T PF04733_consen 76 LSSPSDKESALEELKELLADQAGE-S----------------NEIVQLLAATILFHEGDYE---EALKLLHKG-----GS 130 (290)
T ss_dssp HCTSTTHHCHHHHHHHCCCTS----C----------------HHHHHHHHHHHHCCCCHHH---HHHCCCTTT-----TC
T ss_pred HhCccchHHHHHHHHHHHHhcccc-c----------------cHHHHHHHHHHHHHcCCHH---HHHHHHHcc-----Cc
Confidence 655556666666665544321110 0 0112334455566677777 555544332 56
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHH
Q 002199 616 EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIG--KLEVALDLLQKL 693 (954)
Q Consensus 616 ~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG--~~eeAl~~l~ka 693 (954)
.+....+..+|+.+++++.|...++.+.+.+.+... ..+..+.+.+..| .+.+|.-.|++.
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l-----------------~qLa~awv~l~~g~e~~~~A~y~f~El 193 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQIDEDSIL-----------------TQLAEAWVNLATGGEKYQDAFYIFEEL 193 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHH-----------------HHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHH-----------------HHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 788888899999999999999999998887765421 2223344444555 699999999997
Q ss_pred HhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhc
Q 002199 694 EQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALG 773 (954)
Q Consensus 694 l~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg 773 (954)
....+..+ ..+..++.+++.+|+|++|...+.+|+..+ |.++.++.|++.+...+|
T Consensus 194 ~~~~~~t~--------------------~~lng~A~~~l~~~~~~eAe~~L~~al~~~----~~~~d~LaNliv~~~~~g 249 (290)
T PF04733_consen 194 SDKFGSTP--------------------KLLNGLAVCHLQLGHYEEAEELLEEALEKD----PNDPDTLANLIVCSLHLG 249 (290)
T ss_dssp HCCS--SH--------------------HHHHHHHHHHHHCT-HHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHTT
T ss_pred HhccCCCH--------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHhC
Confidence 66544332 245668999999999999999999999888 788999999999999999
Q ss_pred CH-HHHHHHHHHHHHhCCCCHHH
Q 002199 774 QI-ADAIADCSLAMALDENYTKA 795 (954)
Q Consensus 774 ~~-eeAi~~~ekAL~ldP~~~~a 795 (954)
+. +.+.+++.+....+|+++..
T Consensus 250 k~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 250 KPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp -TCHHHHHHHHHCHHHTTTSHHH
T ss_pred CChhHHHHHHHHHHHhCCCChHH
Confidence 88 66777888888899998653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.1e-08 Score=100.98 Aligned_cols=108 Identities=16% Similarity=0.063 Sum_probs=94.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 440 ~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
.....+..+..++.+|..+...|++++|+.+|++++...|+.. ....++.++|.++..+|++++|+..+++++
T Consensus 27 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 99 (172)
T PRK02603 27 PINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN-------DRSYILYNMGIIYASNGEHDKALEYYHQAL 99 (172)
T ss_pred ccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445678889999999999999999999999999999877642 124789999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 520 TVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLN 554 (954)
Q Consensus 520 el~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~ 554 (954)
.+.|.+..++..+|.+|..+|+...|...++.++.
T Consensus 100 ~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~ 134 (172)
T PRK02603 100 ELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEA 134 (172)
T ss_pred HhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHH
Confidence 99999999999999999999998777766666544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-07 Score=104.50 Aligned_cols=142 Identities=18% Similarity=0.176 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCI-GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVA 747 (954)
Q Consensus 669 a~~~Lg~~y~~l-G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kA 747 (954)
.+..+|.+|... |++++|+++|++|+.+...... .......+..+|.++...++|++|++.|+++
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~--------------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS--------------PHSAAECLLKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--------------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455678888888 9999999999999876322221 2223345667899999999999999999999
Q ss_pred HhhccCC---chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH--HhcCHHHHHHHHH
Q 002199 748 LSTNIES---RPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY-----TKAVSRRAALHE--MIRDYTQAASDLQ 817 (954)
Q Consensus 748 L~l~~~~---~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~-----~~al~~lA~ly~--~lg~~eeAi~~~e 817 (954)
....... .......++..+.|++.+|++..|...+++....+|.+ ...+..+-.++. ....+++|+..|.
T Consensus 182 ~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 182 AKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHT
T ss_pred HHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 8764322 12333466788899999999999999999999999865 233444444443 3456888998888
Q ss_pred HHHHHhh
Q 002199 818 RLVSILE 824 (954)
Q Consensus 818 kAL~l~p 824 (954)
+..+|++
T Consensus 262 ~~~~ld~ 268 (282)
T PF14938_consen 262 SISRLDN 268 (282)
T ss_dssp TSS---H
T ss_pred ccCccHH
Confidence 8777743
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.5e-07 Score=104.17 Aligned_cols=150 Identities=20% Similarity=0.125 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
.+++.+|..++..|++++|+..+...+...|+++..+..++.+++..++..+|++.+++++.++|..
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~------------- 373 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS------------- 373 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-------------
Confidence 7888888888888888888888888888888888888888888888888888888888888888864
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~ 652 (954)
....+.++..++..|++. +|+..+...+..+|.++..|..||+.|..+|+..+|..
T Consensus 374 ------~~l~~~~a~all~~g~~~---eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~--------------- 429 (484)
T COG4783 374 ------PLLQLNLAQALLKGGKPQ---EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL--------------- 429 (484)
T ss_pred ------cHHHHHHHHHHHhcCChH---HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH---------------
Confidence 344677788888888888 77777888888889999999999999999998777643
Q ss_pred hhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002199 653 VLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGS 698 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p 698 (954)
..+..|+..|++++|+..+..+.+...
T Consensus 430 -------------------A~AE~~~~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 430 -------------------ARAEGYALAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred -------------------HHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 346678888999999999998887653
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.6e-07 Score=98.52 Aligned_cols=295 Identities=14% Similarity=0.094 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNF---LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEA 569 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~---~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea 569 (954)
.-....|.-++...++++|+....+.|..-.+. ...+-.+..++..+|+|++++.+---.+...-
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~------------ 74 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAR------------ 74 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH------------
Confidence 345566777788889999999998888754332 33455567888899999988776544333211
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHhch
Q 002199 570 ADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCS-----EKLLEMKADALYMLRKYEEAIQLCEHTLP 644 (954)
Q Consensus 570 ~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~-----~~~~~~lA~~~~~lg~~eeAi~~~ekaL~ 644 (954)
..-......+.+++++..+...-++. +++.+-...+.+.... ......++.++.-++.++++++.|+.+++
T Consensus 75 -~~~ds~~~~ea~lnlar~~e~l~~f~---kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~ 150 (518)
T KOG1941|consen 75 -ELEDSDFLLEAYLNLARSNEKLCEFH---KTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALR 150 (518)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHH
Confidence 11122223455666665555444444 6666665555543222 35677799999999999999999999999
Q ss_pred hhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 002199 645 VAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHH 724 (954)
Q Consensus 645 l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~ 724 (954)
+...+... ...+-++..||..|-.+.++++|+.+..++..+.....-. .+ ........+
T Consensus 151 ~A~~~~D~-----------~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~---------d~-~~kyr~~~l 209 (518)
T KOG1941|consen 151 YAHNNDDA-----------MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK---------DW-SLKYRAMSL 209 (518)
T ss_pred HhhccCCc-----------eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC---------ch-hHHHHHHHH
Confidence 87655332 2223367889999999999999999999998864322100 00 111223466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcc--CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHH
Q 002199 725 KSAGNEAFKSGRYTEAVEHYTVALSTNI--ESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDEN------YTKAV 796 (954)
Q Consensus 725 ~~lG~~~~~~g~~eeAi~~y~kAL~l~~--~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~------~~~al 796 (954)
+.++..+..+|+.-.|.++.++|.++.. .+.+..+.++.-+|.+|...|+.+.|..-|+.|+..... ...++
T Consensus 210 yhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al 289 (518)
T KOG1941|consen 210 YHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEAL 289 (518)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 7789999999999999999999987743 556888899999999999999999999999999876422 35667
Q ss_pred HHHHHHHHHhcCHHH-----HHHHHHHHHHHhh
Q 002199 797 SRRAALHEMIRDYTQ-----AASDLQRLVSILE 824 (954)
Q Consensus 797 ~~lA~ly~~lg~~ee-----Ai~~~ekAL~l~p 824 (954)
...|.++..+.-..+ |++.-.+++++..
T Consensus 290 ~g~Akc~~~~r~~~k~~~Crale~n~r~levA~ 322 (518)
T KOG1941|consen 290 DGAAKCLETLRLQNKICNCRALEFNTRLLEVAS 322 (518)
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 777777766655555 8888888888843
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-07 Score=97.99 Aligned_cols=266 Identities=14% Similarity=0.052 Sum_probs=170.7
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHH
Q 002199 502 RISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTE 581 (954)
Q Consensus 502 y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~ 581 (954)
+++-.+|..||+++.--.+..|.+..++..||.||+...+|.+|..+|++.-.+.|....-+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr------------------ 81 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR------------------ 81 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH------------------
Confidence 37788999999999999999999999999999999999999999999999999988642221
Q ss_pred HHHHHHHHHHhcChHHHH--------------------HHHHH-------HHHHHhcCC--CCHHHHHHHHHHHHHccCH
Q 002199 582 YINCSGKLLEQKTSEAAS--------------------SALER-------INEALSISS--CSEKLLEMKADALYMLRKY 632 (954)
Q Consensus 582 ~l~~a~~ll~~g~~~~a~--------------------eAL~~-------l~kaL~~~P--~~~~~~~~lA~~~~~lg~~ 632 (954)
+..+..++..+.+.+|. .||.+ .+..++.-| +.+......|-++++.|+|
T Consensus 82 -lY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 82 -LYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQY 160 (459)
T ss_pred -HHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccH
Confidence 11222222222222111 11110 111222233 4566777788888888888
Q ss_pred HHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcchhhHHHHHH
Q 002199 633 EEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGS-ISDRYGSEILESS 711 (954)
Q Consensus 633 eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p-~~~~~~~~~l~~~ 711 (954)
++|++-|+.+++..--+.. .-+.++.++++.+++..|+++..+.++..- +++.
T Consensus 161 EaAvqkFqaAlqvsGyqpl-----------------lAYniALaHy~~~qyasALk~iSEIieRG~r~HPE--------- 214 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPL-----------------LAYNLALAHYSSRQYASALKHISEIIERGIRQHPE--------- 214 (459)
T ss_pred HHHHHHHHHHHhhcCCCch-----------------hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc---------
Confidence 8888888888877543221 345678888888888888888777665321 1111
Q ss_pred HHHHHH-----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC-chhhHHHHHHHHHHHHHhc
Q 002199 712 MSLAGT-----------------VRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES-RPFAAICFCNRAAALQALG 773 (954)
Q Consensus 712 ~~l~~~-----------------~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~-~p~~a~~~~~lA~~y~~lg 773 (954)
..+... ...+.++...+.++++.++++.|.+.+.. +-|.. ...++..+.|+|..- ..+
T Consensus 215 lgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLHN~Al~n-~~~ 290 (459)
T KOG4340|consen 215 LGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLHNQALMN-MDA 290 (459)
T ss_pred cCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhhHHHHhc-ccC
Confidence 011110 01234455567778888888888776533 22211 124556666666432 234
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 002199 774 QIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDL 816 (954)
Q Consensus 774 ~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ 816 (954)
++.+..+-++-.|.++|--.+..-++-.+|.+..-|+-|...+
T Consensus 291 ~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 291 RPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred CccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 5666677777778888866677777777888877676666544
|
|
| >KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.4e-10 Score=113.79 Aligned_cols=82 Identities=30% Similarity=0.445 Sum_probs=66.7
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh------HHHHHHHHHHHCCCCCcccccccccCCC--CCCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD------QEQEIRKATKESPQNSHYGRSSDAYGYA--CRSS 935 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~------~~e~~~~~~~~l~~~~~~r~~yD~~g~~--~~~~ 935 (954)
...|.|.+|||.+++++.+|++||++++|+||||++...+ .++.+..++..|++ .+.|++||..|.- ..+.
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsD-eekR~~YDetG~idd~~~d 90 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSD-EEKRAVYDETGSIDDESGD 90 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhH-HHHHHHHhccCCCCCccch
Confidence 4568999999999999999999999999999999996443 34567788899986 7899999998865 2234
Q ss_pred CCCcccccccc
Q 002199 936 RRQSRQDNWKT 946 (954)
Q Consensus 936 ~~~~~~~~~~~ 946 (954)
-...|.+||+-
T Consensus 91 ~~~~~~e~~~~ 101 (264)
T KOG0719|consen 91 IDEDWLEFWRA 101 (264)
T ss_pred hhhHHHHHHHH
Confidence 44569998873
|
|
| >PRK14286 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.7e-10 Score=126.47 Aligned_cols=65 Identities=35% Similarity=0.500 Sum_probs=58.1
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||.++++..|||+|||+||++||||++... ..+.++.+||++|++ +.+|+.||+||..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d-~~kR~~YD~~G~~ 72 (372)
T PRK14286 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRD-PKKRQAYDQFGKA 72 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcc-HHHHHHHHHhCch
Confidence 6899999999999999999999999999999998632 445678889999997 8999999999864
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-08 Score=89.69 Aligned_cols=98 Identities=32% Similarity=0.385 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVY 529 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~ 529 (954)
.++.+|..++..|++++|+..|+++++..|.+. .++..+|.++...+++++|+..|++++.+.|....++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 71 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA----------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAY 71 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHH
Confidence 578899999999999999999999999999886 7899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhch
Q 002199 530 MRAAKCHLVLGEIENAQHYYHKLLNSAA 557 (954)
Q Consensus 530 ~~LA~iy~~lG~~eeAl~~yekaL~l~P 557 (954)
..+|.++...|++++|...+.+++...|
T Consensus 72 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 72 YNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 9999999999999999999999988766
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.91 E-value=2e-08 Score=94.64 Aligned_cols=105 Identities=11% Similarity=0.081 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF-- 525 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~-- 525 (954)
++.++.+|..++..|+|++|+..|.+++...|++. ....+++.+|.+++..|++++|+..|+.++..+|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 74 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST-------YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK 74 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc-------ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc
Confidence 46789999999999999999999999999998763 113689999999999999999999999999998875
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 526 -LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 526 -~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
..+++.+|.++..+|++++|+..|++++...|++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 75 APDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred ccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 6789999999999999999999999999999976
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK14282 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1e-09 Score=125.00 Aligned_cols=66 Identities=32% Similarity=0.555 Sum_probs=58.6
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh-----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY-----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~-----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||+++++..|||+|||+||++||||++... ..+.++.+||++|++ +.+|+.||+||..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d-~~kR~~YD~~g~~ 73 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSD-PQKRAMYDRFGYV 73 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcC-hhhHHHHhhcCcc
Confidence 36899999999999999999999999999999998642 345678899999997 9999999999864
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-09 Score=116.11 Aligned_cols=223 Identities=11% Similarity=0.032 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCc
Q 002199 580 TEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGS 659 (954)
Q Consensus 580 ~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~ 659 (954)
.+.-..+..|+.+|.|+ +||++|.+++..+|.++.++.++|.+|+++.+|..|...|..++.++....-
T Consensus 98 SEiKE~GN~yFKQgKy~---EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~K-------- 166 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYE---EAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVK-------- 166 (536)
T ss_pred HHHHHhhhhhhhccchh---HHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH--------
Confidence 34567899999999999 8999999999999999999999999999999999999999999999864422
Q ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHH----------------HHHHHHH
Q 002199 660 VTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAG----------------TVRALLH 723 (954)
Q Consensus 660 ~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~----------------~~~~~~~ 723 (954)
+|..++.+-..+|...+|.+.++.+|.+.|...... ..+..+..+.. ....+..
T Consensus 167 ---------AYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELk-K~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~ 236 (536)
T KOG4648|consen 167 ---------AYSRRMQARESLGNNMEAKKDCETVLALEPKNIELK-KSLARINSLRERKIATKSTPGFTPARQGMIQILP 236 (536)
T ss_pred ---------HHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHH-HHHHHhcchHhhhHHhhcCCCCCccccchhhhcc
Confidence 778889999999999999999999999999865422 11111111110 0011112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
....|..++..+.|+.++.+|..-+... ..+..+..+ +..|.+.-++++|+..+.+++.++|....+....+.+-
T Consensus 237 ~K~~G~~Fsk~~~~~~~i~~~~~~~A~~----~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~ 311 (536)
T KOG4648|consen 237 IKKPGYKFSKKAMRSVPVVDVVSPRATI----DDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAE 311 (536)
T ss_pred ccCcchhhhhhhccccceeEeecccccc----CccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhH
Confidence 3345778888899999999888766554 223333333 67888999999999999999999999988888889999
Q ss_pred HHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 804 EMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 804 ~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
.-+|...+|...++.++.+.|.+..
T Consensus 312 T~~~~~~E~K~~~~T~~~~~P~~~~ 336 (536)
T KOG4648|consen 312 TIAKTSKEVKPTKQTAVKVAPAVET 336 (536)
T ss_pred HHHhhhhhcCcchhheeeecccccc
Confidence 9999999999999999999776544
|
|
| >PRK14287 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.2e-10 Score=125.30 Aligned_cols=66 Identities=32% Similarity=0.505 Sum_probs=58.7
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||.++++..|||+|||++|++||||++... ..+.++.+||++|++ |.+|+.||+||..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d-~~kR~~YD~~G~~ 71 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSD-PQKKAHYDQFGHT 71 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCc-HhHHHHHHhhCCc
Confidence 36899999999999999999999999999999998654 345678899999997 9999999999964
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.8e-09 Score=90.98 Aligned_cols=67 Identities=27% Similarity=0.460 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG-RMREALEDCMMAATVDP 523 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg-~~eeAl~~~~kALel~P 523 (954)
.+..|..+|..++..|+|++|+.+|+++|+++|++. .+|+++|.+|+.+| ++++|+++++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~----------~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA----------EAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH----------HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----------HHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 478899999999999999999999999999999987 99999999999999 79999999999999998
|
... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.5e-07 Score=91.85 Aligned_cols=206 Identities=15% Similarity=0.063 Sum_probs=144.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 441 TAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT 520 (954)
Q Consensus 441 ~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe 520 (954)
.-+..+.+..++++|..|-..|-+.-|.--|.+++.+.|+.+ .++..+|..+...|+|+.|.+.|...++
T Consensus 58 ~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~----------~vfNyLG~Yl~~a~~fdaa~eaFds~~E 127 (297)
T COG4785 58 ALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP----------EVFNYLGIYLTQAGNFDAAYEAFDSVLE 127 (297)
T ss_pred cCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH----------HHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence 345577899999999999999999999999999999999987 9999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc--ChHHH
Q 002199 521 VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQK--TSEAA 598 (954)
Q Consensus 521 l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g--~~~~a 598 (954)
++|.+--++.++|..++--|+|.-|.+.+.+-...+|.++... ...|+... ++.+|
T Consensus 128 LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~----------------------LWLYl~E~k~dP~~A 185 (297)
T COG4785 128 LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRS----------------------LWLYLNEQKLDPKQA 185 (297)
T ss_pred cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHH----------------------HHHHHHHhhCCHHHH
Confidence 9999999999999999999999999999999999888764321 11222221 22221
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHH
Q 002199 599 SSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYF 678 (954)
Q Consensus 599 ~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~ 678 (954)
. ....+++...+... .-+. + +-+.+|+..+ ...++++..-..++.. ...-...+++.+|..|.
T Consensus 186 ~--tnL~qR~~~~d~e~-WG~~-i--V~~yLgkiS~-e~l~~~~~a~a~~n~~----------~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 186 K--TNLKQRAEKSDKEQ-WGWN-I--VEFYLGKISE-ETLMERLKADATDNTS----------LAEHLTETYFYLGKYYL 248 (297)
T ss_pred H--HHHHHHHHhccHhh-hhHH-H--HHHHHhhccH-HHHHHHHHhhccchHH----------HHHHHHHHHHHHHHHHh
Confidence 1 12223333332111 1111 1 2222333322 1233333333332211 01111126788999999
Q ss_pred HcCCHHHHHHHHHHHHh
Q 002199 679 CIGKLEVALDLLQKLEQ 695 (954)
Q Consensus 679 ~lG~~eeAl~~l~kal~ 695 (954)
..|+.++|...|+-++.
T Consensus 249 ~~G~~~~A~~LfKLaia 265 (297)
T COG4785 249 SLGDLDEATALFKLAVA 265 (297)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 99999999999988765
|
|
| >PRK14298 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.7e-09 Score=123.34 Aligned_cols=66 Identities=41% Similarity=0.572 Sum_probs=58.7
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh---HHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD---QEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~---~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||.++++..|||+|||+||++||||++.... .+.++.+||++|++ |.+|+.||+||..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d-~~kR~~YD~~G~~ 72 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSD-AEKRAQYDRFGHA 72 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcc-hHhhhhhhhcCcc
Confidence 469999999999999999999999999999999986543 34678889999997 9999999999854
|
|
| >PRK14283 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-09 Score=124.36 Aligned_cols=66 Identities=36% Similarity=0.500 Sum_probs=58.7
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||.++++..|||+|||+||++||||++... ..+.++.+||++|++ +.+|+.||+||..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd-~~kR~~YD~~G~~ 72 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSD-DEKRQRYDQFGHA 72 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhch-hHHHHHHhhhccc
Confidence 46999999999999999999999999999999998643 345678889999997 9999999999853
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.8e-09 Score=88.61 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhh
Q 002199 758 AAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIR-DYTQAASDLQRLVSILE 824 (954)
Q Consensus 758 ~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg-~~eeAi~~~ekAL~l~p 824 (954)
++.+|..+|.++..+|++++|+.+|+++|+++|+++.+++++|.+|..+| ++++|+.+|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46788888888888888888888888888888888888888888888888 68888888888888865
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.8e-08 Score=92.70 Aligned_cols=105 Identities=19% Similarity=0.175 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 002199 722 LHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY---TKAVSR 798 (954)
Q Consensus 722 ~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~---~~al~~ 798 (954)
..++.+|..+...|++++|+..|.+++...|+. +....+++.+|.++...|++++|+..|+.++...|++ +.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS-TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 356778999999999999999999999988543 3447789999999999999999999999999998885 678999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 799 RAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 799 lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
+|.++..+|++++|+..|+++++..|++.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 99999999999999999999999977654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK14285 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.7e-09 Score=122.94 Aligned_cols=65 Identities=34% Similarity=0.475 Sum_probs=58.2
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||+++++..|||+|||+||++||||++... ..+.++.+||++|++ +.+|+.||+||..
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d-~~kr~~yd~~g~~ 71 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLID-DNKRAQYDRFGHT 71 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcC-cchhHHHHhcCcc
Confidence 5899999999999999999999999999999998632 346778899999997 8999999999864
|
|
| >PRK14278 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-09 Score=123.25 Aligned_cols=65 Identities=34% Similarity=0.441 Sum_probs=58.1
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChhH---HHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQ---EQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~---~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||+++++..|||+|||++|++||||++....+ +.++.+||++|++ +.+|+.||+||..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d-~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSD-PEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhch-hhhhhhhhccCCc
Confidence 589999999999999999999999999999999976544 4567889999987 9999999999964
|
|
| >PRK14299 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-09 Score=119.51 Aligned_cols=66 Identities=35% Similarity=0.474 Sum_probs=58.4
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh---HHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD---QEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~---~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||.++++..|||+|||++|++||||++.... ...++.+||++|++ +.+|+.||+||..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d-~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSD-PEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcC-HHHHHHHHhcCCc
Confidence 368999999999999999999999999999999986443 44678889999987 8999999999864
|
|
| >PRK14276 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-09 Score=123.39 Aligned_cols=65 Identities=34% Similarity=0.510 Sum_probs=58.4
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||.++++..||++|||+||++||||++... ..+.++.+||++|++ +.+|+.||+||..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d-~~kR~~YD~~G~~ 71 (380)
T PRK14276 4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSD-PQKRAAYDQYGAA 71 (380)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcC-HhhhhhHhhcCCc
Confidence 5899999999999999999999999999999998754 345678899999997 9999999999864
|
|
| >PRK14294 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-09 Score=123.36 Aligned_cols=66 Identities=33% Similarity=0.482 Sum_probs=58.6
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||+++++..|||+|||+||++||||++... ..++++.+||++|++ +.+|+.||+||..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d-~~~r~~yD~~G~~ 72 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSD-PKKRGIYDQYGHE 72 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhcc-HHHHHHHHhhccc
Confidence 46899999999999999999999999999999998742 345678899999997 9999999999964
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.5e-07 Score=95.07 Aligned_cols=145 Identities=21% Similarity=0.204 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc-----------CCHH
Q 002199 616 EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI-----------GKLE 684 (954)
Q Consensus 616 ~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l-----------G~~e 684 (954)
+.+++.+|.+++..|+|++|+..+++.++..|.+... -++++.+|.+++.+ +...
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~--------------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~ 107 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA--------------DYALYMLGLSYYKQIPGILRSDRDQTSTR 107 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH--------------HHHHHHHHHHHHHHHHHHH-TT---HHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch--------------hhHHHHHHHHHHHhCccchhcccChHHHH
Confidence 4556666777777777777777777777776665321 12455556555433 3356
Q ss_pred HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHH
Q 002199 685 VALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCN 764 (954)
Q Consensus 685 eAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~ 764 (954)
+|+..|+..+...|+..... ..-..+..+ ....+..-..+|..|++.|.|..|+..|+.++...|+. +....++..
T Consensus 108 ~A~~~~~~li~~yP~S~y~~-~A~~~l~~l--~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t-~~~~~al~~ 183 (203)
T PF13525_consen 108 KAIEEFEELIKRYPNSEYAE-EAKKRLAEL--RNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDT-PAAEEALAR 183 (203)
T ss_dssp HHHHHHHHHHHH-TTSTTHH-HHHHHHHHH--HHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCchHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCC-chHHHHHHH
Confidence 89999999999999887622 111111111 11122233446777778888888888888877777655 455567777
Q ss_pred HHHHHHHhcCHHHH
Q 002199 765 RAAALQALGQIADA 778 (954)
Q Consensus 765 lA~~y~~lg~~eeA 778 (954)
++.+|.++|..+.|
T Consensus 184 l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 184 LAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHTT-HHHH
T ss_pred HHHHHHHhCChHHH
Confidence 77777777777644
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.9e-08 Score=99.51 Aligned_cols=90 Identities=19% Similarity=0.210 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Q 002199 718 VRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVS 797 (954)
Q Consensus 718 ~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~ 797 (954)
...+..+..+|..+...|++++|+.+|++++.+.+.. +....++.++|.++..+|++++|+..+.+++.+.|.+..++.
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP-NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 3455678889999999999999999999999987432 335679999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 002199 798 RRAALHEMIRD 808 (954)
Q Consensus 798 ~lA~ly~~lg~ 808 (954)
.+|.+|..+|+
T Consensus 111 ~lg~~~~~~g~ 121 (172)
T PRK02603 111 NIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHcCC
Confidence 99999998877
|
|
| >PRK14277 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-09 Score=123.40 Aligned_cols=66 Identities=36% Similarity=0.491 Sum_probs=58.6
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||+++++..|||+|||++|++||||++... ..+.++.+||++|++ +.+|+.||+||..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d-~~kr~~yD~~G~~ 73 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSD-PQKRAQYDQFGHA 73 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCC-HHHHHHHHhhccc
Confidence 36899999999999999999999999999999998632 345688899999997 9999999999854
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.8e-07 Score=96.22 Aligned_cols=184 Identities=12% Similarity=-0.016 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhh
Q 002199 579 VTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKL---LEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLA 655 (954)
Q Consensus 579 ~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~---~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~ 655 (954)
....+..+..++..|+|+ +|+..|++++...|..+.+ .+++|.+|+.+++|++|+..+++.++..|++...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~---~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~--- 105 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWK---QAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI--- 105 (243)
T ss_pred HHHHHHHHHHHHHCCCHH---HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch---
Confidence 455778888999999999 7888899999999987554 4899999999999999999999999999987542
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHH
Q 002199 656 DNGSVTYSLARLWRWRLISKSYFCIG---------------K---LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGT 717 (954)
Q Consensus 656 ~~~~~~~~~~~l~a~~~Lg~~y~~lG---------------~---~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~ 717 (954)
-++++.+|.++..++ + ..+|+..|++.++..|+..-.. ..-..+..+ .
T Consensus 106 -----------~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~-~A~~rl~~l--~ 171 (243)
T PRK10866 106 -----------DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT-DATKRLVFL--K 171 (243)
T ss_pred -----------HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH-HHHHHHHHH--H
Confidence 246788888865554 1 3578899999999999775421 111111111 1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHH
Q 002199 718 VRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCS 783 (954)
Q Consensus 718 ~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~e 783 (954)
...+..-...|..|++.|.|..|+.-++.++...|+. +....++..+..+|..+|..++|.....
T Consensus 172 ~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t-~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 172 DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDT-QATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 1112222345666667777777777777766666544 4555666666666666666666655443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.3e-07 Score=100.04 Aligned_cols=103 Identities=15% Similarity=0.101 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCc
Q 002199 580 TEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGS 659 (954)
Q Consensus 580 ~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~ 659 (954)
..++..+..++..++++ .|+..++..+...|+++.++...+++++..++..+|++.+++++.+.|...
T Consensus 307 aa~YG~A~~~~~~~~~d---~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~--------- 374 (484)
T COG4783 307 AAQYGRALQTYLAGQYD---EALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP--------- 374 (484)
T ss_pred HHHHHHHHHHHHhcccc---hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc---------
Confidence 34555555566666666 444445555666666666666666666666666666666666666666542
Q ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 002199 660 VTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 660 ~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~ 702 (954)
|.++.+|.+|+..|++.+|+..++..+..+|+++.
T Consensus 375 --------~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~ 409 (484)
T COG4783 375 --------LLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN 409 (484)
T ss_pred --------HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence 24556666666666666666666666666665554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.5e-08 Score=86.73 Aligned_cols=97 Identities=29% Similarity=0.354 Sum_probs=90.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
+..+|..++..|++++|+..+++++... |....+++.+|.++...+++++|+..|+.++.+.|.+..++..+|.++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD----PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 5668999999999999999999999998 555688999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHhh
Q 002199 804 EMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 804 ~~lg~~eeAi~~~ekAL~l~p 824 (954)
..+|++++|...+.+++++.|
T Consensus 79 ~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 79 YKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHhHHHHHHHHHHHHccCC
Confidence 999999999999999998854
|
|
| >PRK14297 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.6e-09 Score=122.15 Aligned_cols=65 Identities=34% Similarity=0.545 Sum_probs=58.2
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||.++++..+|++|||+||++||||++... ..+.++.+||++|++ |.+|+.||+||..
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d-~~~r~~yD~~G~~ 72 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSD-PQKKAQYDQFGTA 72 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC-HhhhCchhhcCcc
Confidence 6899999999999999999999999999999998642 345678899999997 8999999999864
|
|
| >PRK14280 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.4e-09 Score=122.22 Aligned_cols=65 Identities=37% Similarity=0.522 Sum_probs=58.3
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||.++++..+||+|||+||++||||++... ..+.++.+||++|++ +.+|+.||+||..
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d-~~kr~~yD~~G~~ 71 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSD-DQKRAQYDQFGHA 71 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhcc-HhHHHHHHhcCcc
Confidence 6899999999999999999999999999999998654 345678889999996 9999999999864
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-07 Score=95.92 Aligned_cols=102 Identities=17% Similarity=0.094 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
.....+..|..+|..+...|+|++|+..|.+++.+.|+.. ..+.+|.++|.+|..+|++++|+..|++++.++
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~ 102 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY-------DRSYILYNIGLIHTSNGEHTKALEYYFQALERN 102 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3455788999999999999999999999999999876532 124689999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHH-------HcCCHHHHHHHHHH
Q 002199 523 PNFLKVYMRAAKCHL-------VLGEIENAQHYYHK 551 (954)
Q Consensus 523 P~~~~a~~~LA~iy~-------~lG~~eeAl~~yek 551 (954)
|....++..+|.++. .+|++++|+..|.+
T Consensus 103 ~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 103 PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 999999999999998 55666655544443
|
|
| >PRK14284 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.4e-09 Score=122.85 Aligned_cols=65 Identities=38% Similarity=0.595 Sum_probs=57.8
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||+++++..|||+|||++|++||||++... ....++.+||++|++ +.+|+.||+||..
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d-~~kR~~YD~~G~~ 69 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSD-AQKRESYDRYGKD 69 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcC-HHHHHHHHhcccc
Confidence 3799999999999999999999999999999998742 345678899999996 8999999999864
|
|
| >PRK14291 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.8e-09 Score=121.98 Aligned_cols=65 Identities=37% Similarity=0.514 Sum_probs=58.5
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||.++++..+||+|||+||++||||++... ..+.++.+||++|++ +.+|+.||+||..
T Consensus 3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd-~~kR~~YD~~g~~ 70 (382)
T PRK14291 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSD-PEKRKLYDQFGHA 70 (382)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcC-HHHHHHHhhhccc
Confidence 6899999999999999999999999999999998754 345678899999997 8999999999864
|
|
| >PRK14301 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.1e-09 Score=121.07 Aligned_cols=66 Identities=33% Similarity=0.515 Sum_probs=58.2
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||+++++..+|++|||++|++||||++... ..+.++.+||++|++ |.+|+.||+||..
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d-~~kr~~yD~~g~~ 72 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRD-AEKRARYDRFGHA 72 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcc-hhhhhhhhhcccc
Confidence 36899999999999999999999999999999998642 345678889999997 8999999999864
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.9e-09 Score=91.79 Aligned_cols=84 Identities=24% Similarity=0.277 Sum_probs=74.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 002199 460 KNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVL 539 (954)
Q Consensus 460 ~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~l 539 (954)
.+|+|+.|+.+|+++++..|.++ ...+++.+|.||+.+|+|++|+..+++ +..+|.+...++.+|.|++.+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~--------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l 71 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNP--------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKL 71 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTH--------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHCCCCh--------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999641 126888899999999999999999999 889999999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 002199 540 GEIENAQHYYHKL 552 (954)
Q Consensus 540 G~~eeAl~~yeka 552 (954)
|+|++|+..|+++
T Consensus 72 ~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 72 GKYEEAIKALEKA 84 (84)
T ss_dssp T-HHHHHHHHHHH
T ss_pred CCHHHHHHHHhcC
Confidence 9999999999875
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-05 Score=92.76 Aligned_cols=331 Identities=11% Similarity=0.060 Sum_probs=215.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHH-----HHHHHcC-------------CH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRA-----ATRISLG-------------RM 508 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA-----~~y~~lg-------------~~ 508 (954)
....|..+|..|.+.|.|++|.+.|+++|+..-.-. .+..++-..+ .+...++ +.
T Consensus 247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvr-------DFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl 319 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVR-------DFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDL 319 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehh-------hHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhH
Confidence 345789999999999999999999999998754322 1112221111 1111111 22
Q ss_pred HHHHHHHHHHH------------hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hchhhhhhHHHHHHHHHHHHH
Q 002199 509 REALEDCMMAA------------TVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLN-SAAAVCLDRRITIEAADGLQK 575 (954)
Q Consensus 509 eeAl~~~~kAL------------el~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~-l~P~~~~~~~~~~ea~~~l~~ 575 (954)
+-.+..|+..+ ..+|++..-|..+.. +..|+..+-+..|..|+. .+|.-....
T Consensus 320 ~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs------------ 385 (835)
T KOG2047|consen 320 ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGS------------ 385 (835)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCC------------
Confidence 33444454444 346777777776544 456788888888888775 455321110
Q ss_pred HHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcC-C---CCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhh-
Q 002199 576 AQKVTEYINCSGKLLEQKTSEAASSALERINEALSIS-S---CSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNF- 650 (954)
Q Consensus 576 ~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~-P---~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~- 650 (954)
--.-|...+..|...++.+ .|-..++++++.. + +-..+|...|..-+...+++.|+.+++.++..-....
T Consensus 386 --~~~Lw~~faklYe~~~~l~---~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~ 460 (835)
T KOG2047|consen 386 --PGTLWVEFAKLYENNGDLD---DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPEL 460 (835)
T ss_pred --hhhHHHHHHHHHHhcCcHH---HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhh
Confidence 1233677788888888888 6777888888765 2 2367888899999999999999999999987633211
Q ss_pred hhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 651 ASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE 730 (954)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~ 730 (954)
................+-.|..++...-..|-++.-...|.+.+.+.-..+. ...+.|..
T Consensus 461 ~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq--------------------ii~NyAmf 520 (835)
T KOG2047|consen 461 EYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ--------------------IIINYAMF 520 (835)
T ss_pred hhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH--------------------HHHHHHHH
Confidence 1111111111111222234566677777888888888888888775332222 34456778
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCCchhhHHHH---HHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHH
Q 002199 731 AFKSGRYTEAVEHYTVALSTNIESRPFAAICF---CNRAAALQALGQIADAIADCSLAMALDEN-YTK-AVSRRAALHEM 805 (954)
Q Consensus 731 ~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~---~~lA~~y~~lg~~eeAi~~~ekAL~ldP~-~~~-al~~lA~ly~~ 805 (954)
+....-+++|.+.|++.+.+-+- |....+| +.....-+.--..+.|...|++||+..|. +.. .++..|.+-..
T Consensus 521 LEeh~yfeesFk~YErgI~LFk~--p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe 598 (835)
T KOG2047|consen 521 LEEHKYFEESFKAYERGISLFKW--PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEE 598 (835)
T ss_pred HHhhHHHHHHHHHHHcCCccCCC--ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 88888899999999999998642 3333333 33333333344899999999999998873 333 34455777777
Q ss_pred hcCHHHHHHHHHHHHHHhhh
Q 002199 806 IRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 806 lg~~eeAi~~~ekAL~l~p~ 825 (954)
-|--..|+..|++|-.-.+.
T Consensus 599 ~GLar~amsiyerat~~v~~ 618 (835)
T KOG2047|consen 599 HGLARHAMSIYERATSAVKE 618 (835)
T ss_pred hhHHHHHHHHHHHHHhcCCH
Confidence 78888999999987665443
|
|
| >KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.2e-09 Score=111.72 Aligned_cols=66 Identities=41% Similarity=0.548 Sum_probs=60.0
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC-h---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE-Y---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~-~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..++|.+||+++++++.+|||+||+|++++|||++.+ + +++.+|++|+..|++ +.+|..||.||.-
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD-~~kR~~YD~~g~~ 99 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSD-PTKRNVYDEYGEL 99 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcC-hhhhhhHHHhhhH
Confidence 5689999999999999999999999999999999876 3 667888999999997 9999999999854
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.2e-07 Score=101.24 Aligned_cols=182 Identities=19% Similarity=0.138 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002199 618 LLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVG 697 (954)
Q Consensus 618 ~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~ 697 (954)
++...|.+|...++|++|...|.++......... .......+...+.+|... ++++|+.+|++++.+.
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~-----------~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y 104 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD-----------KFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIY 104 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHH
Confidence 4445588899999999999999999877654211 111122455666676655 9999999999998753
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhcc--CCchhhHHHHHHHHHHHHHhcC
Q 002199 698 SISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS-GRYTEAVEHYTVALSTNI--ESRPFAAICFCNRAAALQALGQ 774 (954)
Q Consensus 698 p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~-g~~eeAi~~y~kAL~l~~--~~~p~~a~~~~~lA~~y~~lg~ 774 (954)
-. .......+..+..+|.+|... +++++|+++|++|+.+.. +.......++..+|.++..+|+
T Consensus 105 ~~--------------~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 105 RE--------------AGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HH--------------CT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred Hh--------------cCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 21 222334456778899999999 999999999999999843 2234567788999999999999
Q ss_pred HHHHHHHHHHHHHhCCC------CH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 775 IADAIADCSLAMALDEN------YT-KAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 775 ~eeAi~~~ekAL~ldP~------~~-~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
|++|+..|++++...-+ .+ ..++..+.|++.+||+..|...|++...++|.
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999999875321 12 34567788999999999999999999988653
|
|
| >PRK14281 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.3e-09 Score=120.95 Aligned_cols=65 Identities=40% Similarity=0.598 Sum_probs=58.3
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||+++++..+||+|||+||++||||++... ....++.+||++|++ +.+|+.||+||..
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d-~~~r~~yD~~g~~ 71 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSN-DDKRRRYDQFGHA 71 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhh-hhhhhhhhhccch
Confidence 5899999999999999999999999999999998642 345788899999997 8999999999864
|
|
| >KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.4e-09 Score=116.11 Aligned_cols=75 Identities=28% Similarity=0.418 Sum_probs=62.3
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChhH-------HHHHHHHHHHCCCCCcccccccccCCCCCCCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQ-------EQEIRKATKESPQNSHYGRSSDAYGYACRSSRR 937 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~-------~e~~~~~~~~l~~~~~~r~~yD~~g~~~~~~~~ 937 (954)
..+||.+|+|+++|+++||++|||++++.+||||..+++. +..+.+||++|++ |.+|++||.||..+ -+-
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsD-p~kRaIYD~~G~qG--L~t 84 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSD-PQKRAIYDNYGEQG--LKT 84 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHhhhcc--ccc
Confidence 4589999999999999999999999999999999987754 2456789999997 99999999999542 333
Q ss_pred Ccccc
Q 002199 938 QSRQD 942 (954)
Q Consensus 938 ~~~~~ 942 (954)
.+|.-
T Consensus 85 ~gwEl 89 (546)
T KOG0718|consen 85 EGWEL 89 (546)
T ss_pred cCcee
Confidence 44553
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-07 Score=101.53 Aligned_cols=109 Identities=31% Similarity=0.513 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
+..+.|+.+...|+.||+.++|..|+.+|+++|+..-.++ .-.+.+|.|||.|.+.+|+|..||.++.+|+.++
T Consensus 76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~------dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~ 149 (390)
T KOG0551|consen 76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADP------DLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK 149 (390)
T ss_pred ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCc------cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456899999999999999999999999999999866554 3457899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhch
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAA 557 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P 557 (954)
|.+.+++++-|.|++.+.++.+|+...+..+.++-
T Consensus 150 P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 150 PTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 99999999999999999999999999999887654
|
|
| >PRK14295 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.2e-09 Score=120.54 Aligned_cols=66 Identities=35% Similarity=0.510 Sum_probs=58.2
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccc----cCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDA----YGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~----~g~~ 931 (954)
..|||++|||.++++..|||+|||+||++||||++... ..+.++.+||++|++ +.+|+.||+ ||..
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d-~~~r~~yD~~~~~~G~~ 81 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSD-EKKRKEYDEARSLFGNG 81 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCc-hhhHHHHHHHHhhhccc
Confidence 36899999999999999999999999999999998632 455678899999997 899999998 8854
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-05 Score=81.85 Aligned_cols=202 Identities=25% Similarity=0.251 Sum_probs=155.1
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcc
Q 002199 583 INCSGKLLEQKTSEAASSALERINEALS--ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSV 660 (954)
Q Consensus 583 l~~a~~ll~~g~~~~a~eAL~~l~kaL~--~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~ 660 (954)
...+..+...+.+. .++..+...+. ..+.....+..++.++...+++..++..+..++...+....
T Consensus 63 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 130 (291)
T COG0457 63 LLLALALLKLGRLE---EALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL--------- 130 (291)
T ss_pred HHHHHHHHHcccHH---HHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch---------
Confidence 33444444455555 44444555554 56677788888999999999999999999999987765411
Q ss_pred hhhHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 002199 661 TYSLARLWRWRLISK-SYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTE 739 (954)
Q Consensus 661 ~~~~~~l~a~~~Lg~-~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~ee 739 (954)
.....+. ++...|+++.|+..|.+++...|.... ....+...+..+...+++..
T Consensus 131 --------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~ 185 (291)
T COG0457 131 --------AEALLALGALYELGDYEEALELYEKALELDPELNE-----------------LAEALLALGALLEALGRYEE 185 (291)
T ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc-----------------hHHHHHHhhhHHHHhcCHHH
Confidence 2233444 899999999999999999775553000 11223334555788899999
Q ss_pred HHHHHHHHHhhccCCchh-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 740 AVEHYTVALSTNIESRPF-AAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQR 818 (954)
Q Consensus 740 Ai~~y~kAL~l~~~~~p~-~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ek 818 (954)
|+..+.+++... +. ....+..++.++...+++.+|+..+..++...|.....+..++.++...+.+++|...+.+
T Consensus 186 a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (291)
T COG0457 186 ALELLEKALKLN----PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEK 261 (291)
T ss_pred HHHHHHHHHhhC----cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998 55 6788999999999999999999999999999999888888888888877889999999999
Q ss_pred HHHHhhh
Q 002199 819 LVSILEN 825 (954)
Q Consensus 819 AL~l~p~ 825 (954)
++...|.
T Consensus 262 ~~~~~~~ 268 (291)
T COG0457 262 ALELDPD 268 (291)
T ss_pred HHHhCcc
Confidence 9999664
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.5e-05 Score=78.23 Aligned_cols=237 Identities=27% Similarity=0.303 Sum_probs=172.9
Q ss_pred cCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hchhhhhhHHHHHHHHHHHHHHHhHH
Q 002199 505 LGRMREALEDCMMAATVDPN--FLKVYMRAAKCHLVLGEIENAQHYYHKLLN--SAAAVCLDRRITIEAADGLQKAQKVT 580 (954)
Q Consensus 505 lg~~eeAl~~~~kALel~P~--~~~a~~~LA~iy~~lG~~eeAl~~yekaL~--l~P~~~~~~~~~~ea~~~l~~~~~~~ 580 (954)
.+.+..++..+..++...+. ....+..++..+...+.+..++..+...+. ..+.. ..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~ 96 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNL-------------------AE 96 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccch-------------------HH
Confidence 46777777778887777776 367778888888888888888888888775 22221 22
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHhchhhhh--hhhhhhhcc
Q 002199 581 EYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKAD-ALYMLRKYEEAIQLCEHTLPVAEK--NFASVLADN 657 (954)
Q Consensus 581 ~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~-~~~~lg~~eeAi~~~ekaL~l~p~--~~~~~~~~~ 657 (954)
.+...+......+.+. .++..+..++...+.........+. ++...++++.|+..+.+++...|. ..
T Consensus 97 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------- 166 (291)
T COG0457 97 ALLNLGLLLEALGKYE---EALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNEL------- 166 (291)
T ss_pred HHHHHHHHHHHHhhHH---HHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccch-------
Confidence 3344444444555555 6777777777777666555555555 899999999999999999776552 11
Q ss_pred CcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 002199 658 GSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRY 737 (954)
Q Consensus 658 ~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~ 737 (954)
...+..++..+...++++.|+..+.+++...+.. ....+..++..+...+++
T Consensus 167 ---------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 167 ---------AEALLALGALLEALGRYEEALELLEKALKLNPDD-------------------DAEALLNLGLLYLKLGKY 218 (291)
T ss_pred ---------HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------------------chHHHHHhhHHHHHcccH
Confidence 1134455666888999999999999999887653 123456678889999999
Q ss_pred HHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 002199 738 TEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMI 806 (954)
Q Consensus 738 eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~l 806 (954)
..|+..+..++... +.....+..++..+...+.+++|...+.+++...|. ++.++..+...
T Consensus 219 ~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 279 (291)
T COG0457 219 EEALEYYEKALELD----PDNAEALYNLALLLLELGRYEEALEALEKALELDPD----LYNLGLALLLL 279 (291)
T ss_pred HHHHHHHHHHHhhC----cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc----hhhhhHHHHHH
Confidence 99999999999998 445667777888888777899999999999999997 34444444443
|
|
| >PRK10767 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.6e-09 Score=119.26 Aligned_cols=66 Identities=36% Similarity=0.572 Sum_probs=58.2
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||+++++..+||+|||+||++||||++... ..+.++.+||++|++ +.+|+.||.||..
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d-~~~r~~yd~~g~~ 72 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSD-PQKRAAYDQYGHA 72 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcc-hhhhhHhhhcccc
Confidence 36899999999999999999999999999999998632 344578899999987 8999999999864
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.6e-08 Score=88.81 Aligned_cols=84 Identities=20% Similarity=0.250 Sum_probs=74.3
Q ss_pred HcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHH
Q 002199 733 KSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQA 812 (954)
Q Consensus 733 ~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeA 812 (954)
.+++|+.|+.+|++++...|.+ + +..+++.+|.||+.+|+|++|+..+++ +..+|.++..++.+|.+++.+|+|++|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~-~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTN-P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGT-H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCC-h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3689999999999999998542 2 677888899999999999999999999 888999999999999999999999999
Q ss_pred HHHHHHH
Q 002199 813 ASDLQRL 819 (954)
Q Consensus 813 i~~~ekA 819 (954)
+..|+++
T Consensus 78 i~~l~~~ 84 (84)
T PF12895_consen 78 IKALEKA 84 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9999875
|
|
| >PRK14290 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.2e-09 Score=117.94 Aligned_cols=65 Identities=35% Similarity=0.496 Sum_probs=57.8
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh-----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY-----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~-----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||.++++..||++|||+||++||||++... ..+.++.+||++|++ +.+|+.||.||..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d-~~~r~~yd~~G~~ 72 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSD-PQKRRQYDQTGTV 72 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcC-hhhhhhhcccCCc
Confidence 5899999999999999999999999999999998643 334678899999997 8999999999864
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.4e-07 Score=89.89 Aligned_cols=204 Identities=15% Similarity=0.122 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHH
Q 002199 490 PLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEA 569 (954)
Q Consensus 490 ~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea 569 (954)
..+..++.+|..|-.+|-+.-|.-+|.++|.+.|+.+.++..+|.-+...|+|+.|.+.|...++++|.+.
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~--------- 133 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--------- 133 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch---------
Confidence 34689999999999999999999999999999999999999999999999999999999999999999762
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHH-HHHHhchhhhh
Q 002199 570 ADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQ-LCEHTLPVAEK 648 (954)
Q Consensus 570 ~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~-~~ekaL~l~p~ 648 (954)
-.+++++..++.-|++. -|.+.+.+-...+|.+|---.++=..- ..-+..+|.. +.+++...+.+
T Consensus 134 ----------Ya~lNRgi~~YY~gR~~---LAq~d~~~fYQ~D~~DPfR~LWLYl~E-~k~dP~~A~tnL~qR~~~~d~e 199 (297)
T COG4785 134 ----------YAHLNRGIALYYGGRYK---LAQDDLLAFYQDDPNDPFRSLWLYLNE-QKLDPKQAKTNLKQRAEKSDKE 199 (297)
T ss_pred ----------HHHhccceeeeecCchH---hhHHHHHHHHhcCCCChHHHHHHHHHH-hhCCHHHHHHHHHHHHHhccHh
Confidence 33567777777788888 455556666667787764332221111 2224444443 33444333321
Q ss_pred hhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 649 NFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAG 728 (954)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG 728 (954)
.|.|+..+ +.+|+..+ ...++++..... +... + .......++.+|
T Consensus 200 ------------------~WG~~iV~---~yLgkiS~-e~l~~~~~a~a~-~n~~----------~--Ae~LTEtyFYL~ 244 (297)
T COG4785 200 ------------------QWGWNIVE---FYLGKISE-ETLMERLKADAT-DNTS----------L--AEHLTETYFYLG 244 (297)
T ss_pred ------------------hhhHHHHH---HHHhhccH-HHHHHHHHhhcc-chHH----------H--HHHHHHHHHHHH
Confidence 24444332 23333321 112233322211 1110 0 111123556677
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhc
Q 002199 729 NEAFKSGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 729 ~~~~~~g~~eeAi~~y~kAL~l~ 751 (954)
..+...|+.++|...|.-|+..+
T Consensus 245 K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 245 KYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHhccccHHHHHHHHHHHHHHh
Confidence 77777777777777777776654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=93.27 Aligned_cols=103 Identities=16% Similarity=0.102 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..++..+..+..|..+|.+|+|++|...|+-....+|.++ ..++.+|.|+..+++|++|+..|..|..++
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~----------~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~ 101 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP----------DYTMGLAAVCQLKKQFQKACDLYAVAFTLL 101 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3467788999999999999999999999999999999997 899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
++++...+..|.||+.+|+...|+..|+.++..
T Consensus 102 ~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 102 KNDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred cCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999883
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-07 Score=95.56 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSR 798 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~ 798 (954)
..+..+..+|..+...|++++|+..|++++.+.+.. +..+.+++++|.++..+|++++|+..|++++.++|.+..++..
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP-YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 345677889999999999999999999999986432 3456799999999999999999999999999999999999999
Q ss_pred HHHHHH-------HhcCHHHHHHHHHHHHHHhh
Q 002199 799 RAALHE-------MIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 799 lA~ly~-------~lg~~eeAi~~~ekAL~l~p 824 (954)
+|.++. .+|++++|+..+.+++.++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWK 144 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHH
Confidence 999888 88898877777777766643
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.4e-07 Score=99.36 Aligned_cols=105 Identities=26% Similarity=0.159 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHH
Q 002199 720 ALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALG---QIADAIADCSLAMALDENYTKAV 796 (954)
Q Consensus 720 ~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg---~~eeAi~~~ekAL~ldP~~~~al 796 (954)
....|..+|.+|+..+++..|...|.+|+++. |.++.++..+|.+++... ...++...+.+++.+||.++.++
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~----g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA----GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 34577889999999999999999999999999 888999999999888765 57899999999999999999999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 797 SRRAALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 797 ~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
+.||..++..|+|.+|+..++..+++.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999999999999887643
|
|
| >PRK14300 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.6e-09 Score=117.97 Aligned_cols=65 Identities=34% Similarity=0.471 Sum_probs=58.1
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||+++++..|||+|||++|++||||++... ....+|.+||++|++ +.+|+.||+||..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d-~~~r~~yD~~G~~ 70 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKD-EQKRAAYDRFGHD 70 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhh-HhHhhHHHhcccc
Confidence 5899999999999999999999999999999998643 355788899999987 8999999999853
|
|
| >PTZ00341 Ring-infected erythrocyte surface antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.7e-09 Score=123.57 Aligned_cols=68 Identities=26% Similarity=0.317 Sum_probs=60.2
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh---HHHHHHHHHHHCCCCCcccccccccCCCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD---QEQEIRKATKESPQNSHYGRSSDAYGYAC 932 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~---~~e~~~~~~~~l~~~~~~r~~yD~~g~~~ 932 (954)
...+||.+|||.++++..+||+|||+||++|||||++... .++++.+||++|++ |..|+.||.||..+
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSD-p~kRk~YD~~G~~G 641 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGD-IDKKKMYNKFGYDG 641 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCC-HHHHHHHhhccccc
Confidence 4579999999999999999999999999999999987543 45677889999997 99999999999753
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.6e-07 Score=89.02 Aligned_cols=134 Identities=19% Similarity=0.124 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF 525 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~ 525 (954)
+.+...+......+..+++..+...+++.+...|+.+ --..+.+.+|.+++..|++++|+..|+.++...|+.
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~-------ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~ 81 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP-------YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP 81 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH
Confidence 4455666777777788888888888888888888873 113677788888888888888888888888877554
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 526 ---LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 526 ---~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
..+.++||.+++..|++++|+..++.+.
T Consensus 82 ~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~------------------------------------------------- 112 (145)
T PF09976_consen 82 ELKPLARLRLARILLQQGQYDEALATLQQIP------------------------------------------------- 112 (145)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-------------------------------------------------
Confidence 4577888888888888888888875421
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhc
Q 002199 603 ERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTL 643 (954)
Q Consensus 603 ~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL 643 (954)
..+..+.++..+|.+|+..|++++|+..|+++|
T Consensus 113 --------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 113 --------DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred --------CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 122335567788999999999999999999875
|
|
| >PHA03102 Small T antigen; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-08 Score=99.74 Aligned_cols=64 Identities=22% Similarity=0.270 Sum_probs=59.4
Q ss_pred chhhhhccccCC--CHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 867 DFYLILGVKASD--TAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 867 dyYkiLgv~~~a--~~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.+|.+|||++++ +..+||+|||++++++||||+......+++.++++++.+ +..|..||.+|..
T Consensus 6 ~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d-~~~r~~yd~~g~~ 71 (153)
T PHA03102 6 ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRE-SVKSLRDLDGEED 71 (153)
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhh-HHHhccccccCCc
Confidence 479999999999 999999999999999999999887888999999999986 8899999999965
|
|
| >KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.4e-09 Score=111.62 Aligned_cols=66 Identities=35% Similarity=0.477 Sum_probs=58.6
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh-h---HHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY-D---QEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~-~---~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||.+||+..++++.+|++|||+.||+|||||+++. . .+..+.++|++|++ +..|+.||.+|..
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D-~~~R~~YDk~~k~ 73 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSD-EESRAAYDKLRKS 73 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcC-HHHHHHHHHHhhh
Confidence 57899999999999999999999999999999999865 2 34567789999987 8999999999854
|
|
| >TIGR02349 DnaJ_bact chaperone protein DnaJ | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-08 Score=116.61 Aligned_cols=64 Identities=38% Similarity=0.569 Sum_probs=57.3
Q ss_pred chhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 867 dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
|||++|||+++++..+||+|||++|++||||++... ....++.+||++|++ +.+|+.||.||..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d-~~~R~~yd~~g~~ 67 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSD-PEKRAQYDQFGHA 67 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhC-hHHHHhhhhcccc
Confidence 699999999999999999999999999999998643 355678899999997 8899999999864
|
This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. |
| >PRK14292 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-08 Score=116.40 Aligned_cols=65 Identities=37% Similarity=0.565 Sum_probs=57.9
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh---HHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD---QEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~---~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||.++++..+||+|||+++++||||++.... ...++.+||++|++ +.+|+.||.||..
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d-~~~r~~yd~~G~~ 69 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSD-AEKRAHYDRFGTA 69 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcc-hhhhhhHhhcCCc
Confidence 58999999999999999999999999999999997543 44678899999996 9999999999854
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.9e-08 Score=100.86 Aligned_cols=102 Identities=24% Similarity=0.333 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
...++.+.+.|+.+|....|..||.+|.+||.++|... ..|.++|.||+++.+++.+..++.+|++++|+
T Consensus 7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~----------~Y~tnralchlk~~~~~~v~~dcrralql~~N 76 (284)
T KOG4642|consen 7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVA----------SYYTNRALCHLKLKHWEPVEEDCRRALQLDPN 76 (284)
T ss_pred chHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcc----------hhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH
Confidence 45677889999999999999999999999999999987 89999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSA 556 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~ 556 (954)
.+++++.+|.+++....|.+|+..++++..+.
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999997653
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.9e-07 Score=82.83 Aligned_cols=106 Identities=17% Similarity=0.190 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
...+....+-..|..+...|+++.|++.|.++|.+.|..+ .+|.|+|.++.-+|+.++|+.++++|+++.
T Consensus 38 ~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~ra----------SayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 38 QAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERA----------SAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccch----------HhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 3455667788899999999999999999999999999997 999999999999999999999999999997
Q ss_pred CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchh
Q 002199 523 PNF----LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAA 558 (954)
Q Consensus 523 P~~----~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~ 558 (954)
-.. -.++..+|.+|..+|+.+.|...|+.+.++...
T Consensus 108 g~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 108 GDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence 433 457899999999999999999999999887553
|
|
| >PRK10266 curved DNA-binding protein CbpA; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-08 Score=113.72 Aligned_cols=64 Identities=33% Similarity=0.416 Sum_probs=57.1
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh---hHHHHHHHHHHHCCCCCcccccccccCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY---DQEQEIRKATKESPQNSHYGRSSDAYGY 930 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~ 930 (954)
.|||++|||.++++..+||+|||++|++||||++... ....++.+||++|++ +.+|+.||+||.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~-~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSD-EQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhh-HHHHHHHHHhhc
Confidence 5899999999999999999999999999999998643 445678899999986 899999999873
|
|
| >KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.4e-08 Score=112.46 Aligned_cols=64 Identities=33% Similarity=0.396 Sum_probs=56.0
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh-----hHHHHHHHHHHHCCCCCcccccccccC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY-----DQEQEIRKATKESPQNSHYGRSSDAYG 929 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~-----~~~e~~~~~~~~l~~~~~~r~~yD~~g 929 (954)
..+||++|||.+++++.+||++||+|||+|||||++.- ..+..|..||++|++ |..|+-||.+.
T Consensus 7 ~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSd-p~eR~wyd~hr 75 (508)
T KOG0717|consen 7 KRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSD-PQERAWYDSHR 75 (508)
T ss_pred hhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcC-hHhhhhHHHHH
Confidence 56899999999999999999999999999999997644 234678889999997 99999999754
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.6e-07 Score=99.12 Aligned_cols=125 Identities=16% Similarity=0.149 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002199 508 MREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSG 587 (954)
Q Consensus 508 ~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~ 587 (954)
.+.-+.-++..|..+|++.+.|..||.+|+.+|++..|...|.+++++.|++ ...+..++.
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n-------------------~~~~~g~ae 198 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN-------------------PEILLGLAE 198 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC-------------------HHHHHHHHH
Confidence 4566777888899999999999999999999999999999999999999987 455666777
Q ss_pred HHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhh
Q 002199 588 KLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFA 651 (954)
Q Consensus 588 ~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~ 651 (954)
.++....-..-.++...+.+++..+|.++.++..+|..+++.|+|.+|+..++..++..|.+..
T Consensus 199 aL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 199 ALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 7776655555558899999999999999999999999999999999999999999999987643
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.7e-07 Score=93.90 Aligned_cols=126 Identities=19% Similarity=0.176 Sum_probs=107.3
Q ss_pred HhhcCCCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCcccccCCchHHHHHHHHHHHHHHc
Q 002199 434 KQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINS--------VPLSETAGCCIKPLVLCYSNRAATRISL 505 (954)
Q Consensus 434 ~~~~~~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~--------~P~~~~~~~~~~~la~~~~~lA~~y~~l 505 (954)
.+.|.+...+.......+.+.|+.+|+.|+|.+|+..|..||-. .|..+.--...+....++.|.+.|++..
T Consensus 164 ~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~ 243 (329)
T KOG0545|consen 164 RETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKK 243 (329)
T ss_pred cccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhH
Confidence 34677777888888899999999999999999999999999864 2433210000112467899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 506 GRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 506 g~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
|+|-++++.+..+|..+|.+.+||+++|.++...-+..+|...|.++|+++|..
T Consensus 244 ~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 244 EEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 999999999999999999999999999999999999999999999999999964
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.4e-05 Score=86.36 Aligned_cols=334 Identities=14% Similarity=0.081 Sum_probs=203.9
Q ss_pred CHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcC
Q 002199 463 NLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN--FLKVYMRAAKCHLVLG 540 (954)
Q Consensus 463 ~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~--~~~a~~~LA~iy~~lG 540 (954)
.|..--.+|++++-..-+.+ .+|......++.+|+...-...|.+||..-|- +..+|-..-......+
T Consensus 83 ~~~~vn~c~er~lv~mHkmp----------RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~ 152 (835)
T KOG2047|consen 83 AYESVNNCFERCLVFMHKMP----------RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHG 152 (835)
T ss_pred HHHHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCC
Confidence 35555667777777555554 78888899999999999999999999987773 3344544445556677
Q ss_pred CHHHHHHHHHHHHhhchhhhhhHH-------HHHHHHHHHHHHHh------------HHHHHHHHHHHHHhcChHHHHHH
Q 002199 541 EIENAQHYYHKLLNSAAAVCLDRR-------ITIEAADGLQKAQK------------VTEYINCSGKLLEQKTSEAASSA 601 (954)
Q Consensus 541 ~~eeAl~~yekaL~l~P~~~~~~~-------~~~ea~~~l~~~~~------------~~~~l~~a~~ll~~g~~~~a~eA 601 (954)
-.+-++..|++.|++.|......- ...++...+..... ...|..+.......-+...-...
T Consensus 153 lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv 232 (835)
T KOG2047|consen 153 LPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV 232 (835)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH
Confidence 788999999999999996522111 11111111111111 11111111111111110000011
Q ss_pred HHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhh--hhhh----------------hh-hc-----
Q 002199 602 LERINEALSISSCS-EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEK--NFAS----------------VL-AD----- 656 (954)
Q Consensus 602 L~~l~kaL~~~P~~-~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~--~~~~----------------~~-~~----- 656 (954)
-..++..+...++. ..+|..||..|++.|.++.|...|+++++.--. ++.. .. ++
T Consensus 233 daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n 312 (835)
T KOG2047|consen 233 DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGN 312 (835)
T ss_pred HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 22344445444443 457888999999999999999988888742110 0000 00 00
Q ss_pred ---cCcc---------------------------------------------------------------hhhHHHHHHH
Q 002199 657 ---NGSV---------------------------------------------------------------TYSLARLWRW 670 (954)
Q Consensus 657 ---~~~~---------------------------------------------------------------~~~~~~l~a~ 670 (954)
...+ ...... .|
T Consensus 313 ~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~--Lw 390 (835)
T KOG2047|consen 313 EEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGT--LW 390 (835)
T ss_pred hhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhh--HH
Confidence 0000 001111 34
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 671 RLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALST 750 (954)
Q Consensus 671 ~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l 750 (954)
..+|..|...|+++.|...|+++.+..=.. ....+..|.+-|..-++..+++.|+.+.+.|...
T Consensus 391 ~~faklYe~~~~l~~aRvifeka~~V~y~~----------------v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 391 VEFAKLYENNGDLDDARVIFEKATKVPYKT----------------VEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhcCCccc----------------hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 455666666666666666666665532111 1122445666777778888888888888888765
Q ss_pred cc--------CCch------hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 002199 751 NI--------ESRP------FAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDL 816 (954)
Q Consensus 751 ~~--------~~~p------~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ 816 (954)
-. +..| ....+|..++......|-++.....|+++|.+.=-.|+...+.|..+....-+++|.+.|
T Consensus 455 P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 455 PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 21 1112 234566677777778888888888888888888778888888898888888899999999
Q ss_pred HHHHHHhh
Q 002199 817 QRLVSILE 824 (954)
Q Consensus 817 ekAL~l~p 824 (954)
++.+.|++
T Consensus 535 ErgI~LFk 542 (835)
T KOG2047|consen 535 ERGISLFK 542 (835)
T ss_pred HcCCccCC
Confidence 99888875
|
|
| >PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein [] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-08 Score=85.96 Aligned_cols=59 Identities=32% Similarity=0.445 Sum_probs=52.4
Q ss_pred chhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh-----HHHHHHHHHHHCCCCCccccccc
Q 002199 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD-----QEQEIRKATKESPQNSHYGRSSD 926 (954)
Q Consensus 867 dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~-----~~e~~~~~~~~l~~~~~~r~~yD 926 (954)
+||++|||.++++..+|+++|+++++++|||+..... ....|.++++.|++ +..|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~-~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSD-PERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCC-HHHHHhcC
Confidence 5899999999999999999999999999999976655 45678889999986 88888887
|
Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A .... |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.3e-06 Score=97.87 Aligned_cols=309 Identities=16% Similarity=0.050 Sum_probs=153.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002199 455 GNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAK 534 (954)
Q Consensus 455 G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~ 534 (954)
+....+.|.+++|+.+|.+.-+. -.+-..|...|.+++|++..+.-=.+. .-..|++.|.
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR~------------------DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~ 866 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKRY------------------DLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAK 866 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH------------------HHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHH
Confidence 34445556666666666665432 233445667777777777665432222 2347888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCC
Q 002199 535 CHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSC 614 (954)
Q Consensus 535 iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~ 614 (954)
-+...++.+.|+++|+++-...-+ +... ..++. .+++.|-+- ..
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafe----------v~rm-------------------L~e~p---~~~e~Yv~~----~~ 910 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFE----------VFRM-------------------LKEYP---KQIEQYVRR----KR 910 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHH----------HHHH-------------------HHhCh---HHHHHHHHh----cc
Confidence 888888888888888875321100 0000 00011 122222111 12
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCc-----chhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 002199 615 SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGS-----VTYSLARLWRWRLISKSYFCIGKLEVALDL 689 (954)
Q Consensus 615 ~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~-----~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~ 689 (954)
++.+|.+.|..+...|+.+.|+.+|..+-+....-- ........ +.......-++|.||..|...|++.+|+.+
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~Vr-I~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~F 989 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVR-IKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKF 989 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhhhhhhee-eEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHH
Confidence 234444455555555555555555544422111000 00000000 000001112788999999999999999999
Q ss_pred HHHHHhhCCCCcchh-hHHHHHHHHHH------------HHHHHHHHH-HHHHHHHHHcCCHHHHHHHHHH-----HHhh
Q 002199 690 LQKLEQVGSISDRYG-SEILESSMSLA------------GTVRALLHH-KSAGNEAFKSGRYTEAVEHYTV-----ALST 750 (954)
Q Consensus 690 l~kal~l~p~~~~~~-~~~l~~~~~l~------------~~~~~~~~~-~~lG~~~~~~g~~eeAi~~y~k-----AL~l 750 (954)
|.+|........-+- .++-+.+..+. ....+.-.+ .....+|.+.|.+.+|+++-=+ ||++
T Consensus 990 fTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen 990 FTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence 998755321100000 00001111110 011111101 1112445555666655553211 1111
Q ss_pred -ccC-CchhhHHHHHHHHHHHHHhcCHHHHHHHH------HHHHHhC----------------CC---------CHHHHH
Q 002199 751 -NIE-SRPFAAICFCNRAAALQALGQIADAIADC------SLAMALD----------------EN---------YTKAVS 797 (954)
Q Consensus 751 -~~~-~~p~~a~~~~~lA~~y~~lg~~eeAi~~~------ekAL~ld----------------P~---------~~~al~ 797 (954)
..+ +...++.++..-+..+....+|++|...+ +.|+.+- |. -...+-
T Consensus 1070 Ia~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLe 1149 (1416)
T KOG3617|consen 1070 IAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLE 1149 (1416)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHH
Confidence 001 11235556666666777777888877654 3344331 21 145788
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Q 002199 798 RRAALHEMIRDYTQAASDLQRLV 820 (954)
Q Consensus 798 ~lA~ly~~lg~~eeAi~~~ekAL 820 (954)
.+|.+++++|.|..|.+-|.+|=
T Consensus 1150 qvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1150 QVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHHHhccchHHHHHHHhhhh
Confidence 89999999999999998887653
|
|
| >PRK14289 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.6e-08 Score=116.02 Aligned_cols=66 Identities=35% Similarity=0.513 Sum_probs=58.2
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||+++++..||++|||++|++||||++... ..+.++.+||++|++ +..|+.||+||..
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d-~~~R~~yD~~G~~ 73 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSD-PDKRSRYDQFGHA 73 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcC-HHHHHHHHHhccc
Confidence 36899999999999999999999999999999998643 345678899999996 8899999999864
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-06 Score=87.22 Aligned_cols=125 Identities=19% Similarity=0.151 Sum_probs=103.5
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCch
Q 002199 677 YFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRP 756 (954)
Q Consensus 677 y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p 756 (954)
.+..++...+...+++.+...|.... ...+...+|.+++..|++++|+..|+.++...++ +.
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~s~y-----------------a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d-~~ 82 (145)
T PF09976_consen 21 ALQAGDPAKAEAAAEQLAKDYPSSPY-----------------AALAALQLAKAAYEQGDYDEAKAALEKALANAPD-PE 82 (145)
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChH-----------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-HH
Confidence 33588888888889998887776633 1235566899999999999999999999997633 25
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002199 757 FAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLV 820 (954)
Q Consensus 757 ~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL 820 (954)
....+.+.+|.+++..|++++|+..++. +.-.+-.+.++..+|.+|...|++++|+..|+++|
T Consensus 83 l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 83 LKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 5678899999999999999999999976 33445567788999999999999999999999885
|
|
| >PRK14293 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2e-08 Score=114.71 Aligned_cols=65 Identities=35% Similarity=0.522 Sum_probs=58.0
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||+++++..+|++|||+++++||||++... ..+.++.+||++|++ +..|+.||+||..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~-~~~R~~yd~~g~~ 70 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSD-PETRARYDQFGEA 70 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhc-hHHHHHHhhcccc
Confidence 5899999999999999999999999999999998654 345678889999986 8999999999864
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1e-06 Score=99.89 Aligned_cols=163 Identities=15% Similarity=0.125 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHH---HhCCCCcccccCCchHHHHHHHHHHHHHHc---------CCHHHHHHH
Q 002199 450 MWRLRGNQAYKNN---NLTEAEDFYTQGI---NSVPLSETAGCCIKPLVLCYSNRAATRISL---------GRMREALED 514 (954)
Q Consensus 450 ~l~~~G~~~~~~g---~y~eAi~~y~kAL---~~~P~~~~~~~~~~~la~~~~~lA~~y~~l---------g~~eeAl~~ 514 (954)
.++.+|...+..+ ....|+.+|.+|+ .++|... .+|..+|.||+.. ....+|++.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a----------~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~ 326 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKT----------ECYCLLAECHMSLALHGKSELELAAQKALEL 326 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccH----------HHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 5588888887665 4567999999999 8899886 8999999999875 235688999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Q 002199 515 CMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKT 594 (954)
Q Consensus 515 ~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~ 594 (954)
.++|++++|.++.++..+|.++...++++.|+..|++++.++|+. +..++..+......|+
T Consensus 327 A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~-------------------A~~~~~~~~~~~~~G~ 387 (458)
T PRK11906 327 LDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI-------------------ASLYYYRALVHFHNEK 387 (458)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc-------------------HHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999986 5678888888888888
Q ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHccCHHHHHHHHHHhch
Q 002199 595 SEAASSALERINEALSISSCSEKLLEMKADA-LYMLRKYEEAIQLCEHTLP 644 (954)
Q Consensus 595 ~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~-~~~lg~~eeAi~~~ekaL~ 644 (954)
.+ +|++.+++++.++|....+-...-.+ .+-....+.||.+|-+-.+
T Consensus 388 ~~---~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 388 IE---EARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred HH---HHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 88 88999999999999876555444444 4555667888887765433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.5e-06 Score=86.33 Aligned_cols=252 Identities=11% Similarity=0.069 Sum_probs=169.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhH
Q 002199 500 ATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKV 579 (954)
Q Consensus 500 ~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~ 579 (954)
.-|+.+|+|..++...++.-... ......+.+++.|+.+|++..-+......- ..| .
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~-~~~---------------------l 72 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK-ATP---------------------L 72 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc-CCh---------------------H
Confidence 34566899999998887765544 677788888999999999876655443322 111 1
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhcc
Q 002199 580 TEYINCSGKLLEQKTSEAASSALERINEALS--ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADN 657 (954)
Q Consensus 580 ~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~--~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~ 657 (954)
.+....+..+-..+..+ .-+..+.+.+. ....+...+..-|.+++.-+++++|+...+....+.
T Consensus 73 qAvr~~a~~~~~e~~~~---~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE----------- 138 (299)
T KOG3081|consen 73 QAVRLLAEYLELESNKK---SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLE----------- 138 (299)
T ss_pred HHHHHHHHHhhCcchhH---HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHH-----------
Confidence 11111111111111111 22222222222 122334566667889999999999999988744432
Q ss_pred CcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 002199 658 GSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRY 737 (954)
Q Consensus 658 ~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~ 737 (954)
+..+--.++.++.+++-|...+++..+++.+.. ..+.+.+|..++ ..-+++
T Consensus 139 -----------~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t---------------LtQLA~awv~la---~ggek~ 189 (299)
T KOG3081|consen 139 -----------AAALNVQILLKMHRFDLAEKELKKMQQIDEDAT---------------LTQLAQAWVKLA---TGGEKI 189 (299)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH---------------HHHHHHHHHHHh---ccchhh
Confidence 223345678889999999999999887753221 001122332222 233568
Q ss_pred HHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 002199 738 TEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQ 817 (954)
Q Consensus 738 eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~e 817 (954)
.+|.-+|++.-... +..+.++...|.|++.+++|++|...++.+|..++++++++.++-.+-..+|.-.++...+-
T Consensus 190 qdAfyifeE~s~k~----~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 190 QDAFYIFEELSEKT----PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhHHHHHHHHhccc----CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 89999999987765 66788999999999999999999999999999999999999999999999999887776554
Q ss_pred HHHH
Q 002199 818 RLVS 821 (954)
Q Consensus 818 kAL~ 821 (954)
.-++
T Consensus 266 ~QLk 269 (299)
T KOG3081|consen 266 SQLK 269 (299)
T ss_pred HHHH
Confidence 3333
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.2e-06 Score=100.29 Aligned_cols=260 Identities=17% Similarity=0.079 Sum_probs=193.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-chhhhhhHHHHHHHHHHHHHHHhHHHHH
Q 002199 505 LGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS-AAAVCLDRRITIEAADGLQKAQKVTEYI 583 (954)
Q Consensus 505 lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l-~P~~~~~~~~~~ea~~~l~~~~~~~~~l 583 (954)
+++-.+..++|++.+.-+|+..-.|++.-..++++++.++|++.+++||.. ++.- . .+.+..|+
T Consensus 1437 l~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~RE------------e---eEKLNiWi 1501 (1710)
T KOG1070|consen 1437 LSRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFRE------------E---EEKLNIWI 1501 (1710)
T ss_pred cccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcch------------h---HHHHHHHH
Confidence 333445678999999999999999999999999999999999999999973 2211 1 11122233
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhh
Q 002199 584 NCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYS 663 (954)
Q Consensus 584 ~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~ 663 (954)
.+......-|.-+ ...+.|++|.+.+ +...+|..|..+|..-+++++|.++|+..++...+...
T Consensus 1502 A~lNlEn~yG~ee---sl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~------------ 1565 (1710)
T KOG1070|consen 1502 AYLNLENAYGTEE---SLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRK------------ 1565 (1710)
T ss_pred HHHhHHHhhCcHH---HHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhh------------
Confidence 3333333333222 5667777877765 34567888999999999999999999999987653322
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 002199 664 LARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEH 743 (954)
Q Consensus 664 ~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~ 743 (954)
.|..+|..+++..+-+.|...+.+||+..|...+ +......+++-|+.|+.+.+...
T Consensus 1566 -----vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH------------------v~~IskfAqLEFk~GDaeRGRtl 1622 (1710)
T KOG1070|consen 1566 -----VWIMYADFLLRQNEAEAARELLKRALKSLPKQEH------------------VEFISKFAQLEFKYGDAERGRTL 1622 (1710)
T ss_pred -----HHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh------------------HHHHHHHHHHHhhcCCchhhHHH
Confidence 6888999999999999999999999998886433 22233457888999999999999
Q ss_pred HHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHH
Q 002199 744 YTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALD--ENYTKAVSRRAALHEMI-RDYTQAASDLQRLV 820 (954)
Q Consensus 744 y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld--P~~~~al~~lA~ly~~l-g~~eeAi~~~ekAL 820 (954)
|+-.+.-. |...++|.-+...-.+.++.+.+...|++++.+. |.....+|.+-.-|.+. |+-+.....=.+|+
T Consensus 1623 fEgll~ay----PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1623 FEGLLSAY----PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred HHHHHhhC----ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 99999988 7888999999999999999999999999999874 55566666665555554 44333333333444
Q ss_pred HH
Q 002199 821 SI 822 (954)
Q Consensus 821 ~l 822 (954)
+.
T Consensus 1699 EY 1700 (1710)
T KOG1070|consen 1699 EY 1700 (1710)
T ss_pred HH
Confidence 43
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-07 Score=79.75 Aligned_cols=64 Identities=19% Similarity=0.209 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 496 SNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 496 ~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999999999999999999999999999999999975
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-07 Score=79.96 Aligned_cols=63 Identities=21% Similarity=0.171 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 764 NRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 764 ~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|++++++.|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 467777778888888888888888888888888888888888888888888888888776654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-06 Score=104.05 Aligned_cols=138 Identities=12% Similarity=0.111 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC--------CHHHHHHHH
Q 002199 447 TCEMWRLRGNQAYKNNN---LTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG--------RMREALEDC 515 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~---y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg--------~~eeAl~~~ 515 (954)
.+-.++.+|..++..+. +..|+.+|++||+++|++. .+|..++.+|.... +...+...+
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a----------~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFT----------YAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcH----------HHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 45567889998887765 8899999999999999997 78888888876642 345666666
Q ss_pred HHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 002199 516 MMAATV--DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQK 593 (954)
Q Consensus 516 ~kALel--~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g 593 (954)
.+++.+ +|..+.+|..+|..+...|++++|...|++++.++|. +..+..++..+...|
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps--------------------~~a~~~lG~~~~~~G 467 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS--------------------WLNYVLLGKVYELKG 467 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------------------HHHHHHHHHHHHHcC
Confidence 776664 6777888888899988899999999999998887763 233444455555555
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCHH
Q 002199 594 TSEAASSALERINEALSISSCSEK 617 (954)
Q Consensus 594 ~~~~a~eAL~~l~kaL~~~P~~~~ 617 (954)
+++ +|++.|.+|+.++|..+.
T Consensus 468 ~~~---eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 468 DNR---LAADAYSTAFNLRPGENT 488 (517)
T ss_pred CHH---HHHHHHHHHHhcCCCCch
Confidence 555 455555555555555443
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.8e-07 Score=95.90 Aligned_cols=130 Identities=27% Similarity=0.318 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002199 720 ALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRR 799 (954)
Q Consensus 720 ~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~l 799 (954)
.+..+..-|+.|++.++|..|+..|.++|...-.++..++.+|.|+|.|.+.+|+|..||.+|.+|+.++|.+..++++-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 45567788999999999999999999999998777788999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhhhHHHH-HhhcCCCCcchhhhhhHHH
Q 002199 800 AALHEMIRDYTQAASDLQRLVSILENQSAEK-AKQSRSPGRTISSRDLRQA 849 (954)
Q Consensus 800 A~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~-~~~~~~P~~~~~~~~L~~a 849 (954)
|.|++.+.++.+|..+.+..+.++.+....- .....+|++.......+..
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~~l~~k~~~~~L~~er~~ 210 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDEAKKAIELRNLIHKNDKLKLIEERDV 210 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcCcchHHHHHHHHHH
Confidence 9999999999999999999999977665432 2223467666655444433
|
|
| >KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.7e-08 Score=107.69 Aligned_cols=64 Identities=34% Similarity=0.530 Sum_probs=57.9
Q ss_pred chhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChhH---HHHHHHHHHHCCCCCcccccccccCCC
Q 002199 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQ---EQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 867 dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~---~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
|||++|||.++++..|||+||++||.+||||.+....+ +.++.++|+.|++ +++|+.||++|..
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd-~eKR~~YD~~~~~ 110 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSD-EEKRQEYDVYGLE 110 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcC-HHHHHHHHHhhhh
Confidence 89999999999999999999999999999999987654 4677788999997 8999999999853
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1e-06 Score=104.52 Aligned_cols=139 Identities=12% Similarity=0.020 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCC
Q 002199 668 WRWRLISKSYFCIGK---LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFK--------SGR 736 (954)
Q Consensus 668 ~a~~~Lg~~y~~lG~---~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~--------~g~ 736 (954)
|.+++.|..|+..++ +..|+.+|+++++++|+..... ..++.++.. ..+
T Consensus 340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~--------------------A~la~~~~~~~~~~~~~~~~ 399 (517)
T PRK10153 340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQ--------------------AEKALADIVRHSQQPLDEKQ 399 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHH--------------------HHHHHHHHHHHhcCCccHHH
Confidence 456777888876655 7899999999999999885422 111222111 123
Q ss_pred HHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 002199 737 YTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDL 816 (954)
Q Consensus 737 ~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ 816 (954)
...|.....+++.+.. .+..+.+|..+|..+...|++++|...+++|+.++| +..+|..+|.++...|++++|++.|
T Consensus 400 l~~a~~~~~~a~al~~--~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 400 LAALSTELDNIVALPE--LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred HHHHHHHHHHhhhccc--CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4566666667666521 155678899999999999999999999999999999 5889999999999999999999999
Q ss_pred HHHHHHhhhhHHH
Q 002199 817 QRLVSILENQSAE 829 (954)
Q Consensus 817 ekAL~l~p~~~~~ 829 (954)
++|+.++|....+
T Consensus 477 ~~A~~L~P~~pt~ 489 (517)
T PRK10153 477 STAFNLRPGENTL 489 (517)
T ss_pred HHHHhcCCCCchH
Confidence 9999997765443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-06 Score=95.25 Aligned_cols=105 Identities=9% Similarity=-0.012 Sum_probs=93.6
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--
Q 002199 448 CEMWRLRGNQA-YKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN-- 524 (954)
Q Consensus 448 ae~l~~~G~~~-~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~-- 524 (954)
...++..|..+ +..|+|++|+..|++.|...|+.. -...+++.+|.+|+..|++++|+..|++++...|+
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~-------~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~ 214 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST-------YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP 214 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc-------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 35667777776 678999999999999999999974 11378999999999999999999999999998886
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 525 -FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 525 -~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
.+.+++.+|.++..+|++++|+..|+++++..|+.
T Consensus 215 ~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 215 KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 58899999999999999999999999999999975
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.7e-06 Score=96.58 Aligned_cols=172 Identities=16% Similarity=0.068 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhcc
Q 002199 581 EYINCSGKLLEQKTSEAASSALERINEAL---SISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADN 657 (954)
Q Consensus 581 ~~l~~a~~ll~~g~~~~a~eAL~~l~kaL---~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~ 657 (954)
..+..|...+..+..+....|+..+.+++ .++|....+|..+|.|++..-
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~--------------------------- 309 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLA--------------------------- 309 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHH---------------------------
Confidence 34666777777777777778999999999 899999999999998886541
Q ss_pred CcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 002199 658 GSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRY 737 (954)
Q Consensus 658 ~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~ 737 (954)
.+|..- ...+..+|+++.+++++++|.++. ++..+|.++...+++
T Consensus 310 --------------~~g~~~-~~~~~~~a~~~A~rAveld~~Da~--------------------a~~~~g~~~~~~~~~ 354 (458)
T PRK11906 310 --------------LHGKSE-LELAAQKALELLDYVSDITTVDGK--------------------ILAIMGLITGLSGQA 354 (458)
T ss_pred --------------HhcCCC-chHHHHHHHHHHHHHHhcCCCCHH--------------------HHHHHHHHHHhhcch
Confidence 001111 223345677777888888877754 455577777777888
Q ss_pred HHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhcCHHHHHHHH
Q 002199 738 TEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAAL-HEMIRDYTQAASDL 816 (954)
Q Consensus 738 eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~l-y~~lg~~eeAi~~~ 816 (954)
+.|+..|++|+.++ |+.+.+|+.+|.++...|+.++|++.++++++++|.-..+-...-.+ .+-....++|+..|
T Consensus 355 ~~a~~~f~rA~~L~----Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 355 KVSHILFEQAKIHS----TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred hhHHHHHHHHhhcC----CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 88888888888888 78888888888888888999999999999999988776655554444 44456677777776
Q ss_pred HH
Q 002199 817 QR 818 (954)
Q Consensus 817 ek 818 (954)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 54
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3e-07 Score=94.48 Aligned_cols=98 Identities=32% Similarity=0.413 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAAL 802 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~l 802 (954)
.+...|+.++...+|..||.+|.+||.++ |..+..|.++|.||+++.+++.+...+.+|++++|+.+.+++.+|..
T Consensus 12 qlkE~gnk~f~~k~y~~ai~~y~raI~~n----P~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 12 QLKEQGNKCFIPKRYDDAIDCYSRAICIN----PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred HHHhccccccchhhhchHHHHHHHHHhcC----CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 45567999999999999999999999999 88899999999999999999999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHhh
Q 002199 803 HEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 803 y~~lg~~eeAi~~~ekAL~l~p 824 (954)
+.....|++||..++++..+..
T Consensus 88 ~l~s~~~~eaI~~Lqra~sl~r 109 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRAYSLLR 109 (284)
T ss_pred HHhhccccHHHHHHHHHHHHHh
Confidence 9999999999999999998843
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-06 Score=94.99 Aligned_cols=103 Identities=11% Similarity=0.023 Sum_probs=90.0
Q ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 002199 724 HKSAGNEA-FKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDEN---YTKAVSRR 799 (954)
Q Consensus 724 ~~~lG~~~-~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~---~~~al~~l 799 (954)
.+..+..+ +..|+|++|+..|+..+...|+. +..+.+++.+|.+|+..|++++|+..|++++...|+ .+++++.+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s-~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS-TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34455554 56799999999999999999654 455789999999999999999999999999998877 58899999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 800 AALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 800 A~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
|.++..+|++++|+..|+++++.+|+..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 9999999999999999999999977654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-06 Score=86.60 Aligned_cols=100 Identities=16% Similarity=0.078 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSR 798 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~ 798 (954)
..+...+..|.-++..|++++|...|+-....+ +.+...+..||.|+..+++|++|+..|..|..++++++...+.
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d----~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYD----FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 345567778999999999999999999998888 7788899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 799 RAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 799 lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
.|.||+.+|+.+.|+.+|+.++..
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhC
Confidence 999999999999999999999983
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3e-05 Score=86.85 Aligned_cols=331 Identities=17% Similarity=0.123 Sum_probs=203.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhcCC------Cc--HHH
Q 002199 458 AYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMA-ATVDP------NF--LKV 528 (954)
Q Consensus 458 ~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kA-Lel~P------~~--~~a 528 (954)
+++..++..+...-+-++.+..+.+ .++...+..++..|+|..|.+.+... +.-.| .. --.
T Consensus 216 llq~~~Lk~~krevK~vmn~a~~s~----------~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif 285 (696)
T KOG2471|consen 216 LLQTRNLKLAKREVKHVMNIAQDSS----------MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIF 285 (696)
T ss_pred HHHHHHHHHHHHhhhhhhhhcCCCc----------HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhhee
Confidence 4556666667666666666666555 77788888888888888888876543 12222 22 224
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh-hchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 002199 529 YMRAAKCHLVLGEIENAQHYYHKLLN-SAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINE 607 (954)
Q Consensus 529 ~~~LA~iy~~lG~~eeAl~~yekaL~-l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~k 607 (954)
|.++|.|++++|.|.-+..+|.+||+ ..... ...........+.........|+.+..++..|++- .|.++|.+
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL--~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl---~AfqCf~~ 360 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQL--RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPL---LAFQCFQK 360 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHHH--hccCCCCcceehhcccchhhHHhhhHHHHhcCCcH---HHHHHHHH
Confidence 56888899999999999999998886 11100 00000001112333344677899999999999998 78899999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccC-------------------------------------------------HHHHHHH
Q 002199 608 ALSISSCSEKLLEMKADALYMLRK-------------------------------------------------YEEAIQL 638 (954)
Q Consensus 608 aL~~~P~~~~~~~~lA~~~~~lg~-------------------------------------------------~eeAi~~ 638 (954)
+....-.+|.+|..+|+|.+...+ .+=|.-+
T Consensus 361 av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vC 440 (696)
T KOG2471|consen 361 AVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVC 440 (696)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHH
Confidence 999888899999999998876321 1223334
Q ss_pred HHHhchhhhhhhhh------hhhcc--------------C---------cc------hhhH-----HHHHHHHHHHHHHH
Q 002199 639 CEHTLPVAEKNFAS------VLADN--------------G---------SV------TYSL-----ARLWRWRLISKSYF 678 (954)
Q Consensus 639 ~ekaL~l~p~~~~~------~~~~~--------------~---------~~------~~~~-----~~l~a~~~Lg~~y~ 678 (954)
++.+|-+-|+.... ..+.. + .. ...+ .+.-++...+.+-+
T Consensus 441 Lrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L 520 (696)
T KOG2471|consen 441 LRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVEL 520 (696)
T ss_pred HHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 44444332211000 00000 0 00 0011 11123444566667
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------hh--
Q 002199 679 CIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL------ST-- 750 (954)
Q Consensus 679 ~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL------~l-- 750 (954)
.+|+.-.|+..-.+.+++..-. ..-....+...|.+++...+..+|+.++.--+ .+
T Consensus 521 ~Lgd~i~AL~~a~kLLq~~~lS----------------~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~ 584 (696)
T KOG2471|consen 521 ELGDPIKALSAATKLLQLADLS----------------KIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPY 584 (696)
T ss_pred HhcChhhHHHHHHHHHhhhhhh----------------hHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCccccccc
Confidence 8888888888888887752111 11122334446677777888888888775521 11
Q ss_pred ---------------cc------CCc-----hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Q 002199 751 ---------------NI------ESR-----PFAAICFCNRAAALQALGQIADAIADCSLAMALDE--NYTKAVSRRAAL 802 (954)
Q Consensus 751 ---------------~~------~~~-----p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP--~~~~al~~lA~l 802 (954)
+| +.. .-....++++|.+|.-+|++++|...+..|..+-+ ..++|....-.+
T Consensus 585 n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyi 664 (696)
T KOG2471|consen 585 NQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYI 664 (696)
T ss_pred chhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHH
Confidence 00 000 12345677888888888888888888888877766 456676666667
Q ss_pred HHHhcCHHHHHHHHHHH
Q 002199 803 HEMIRDYTQAASDLQRL 819 (954)
Q Consensus 803 y~~lg~~eeAi~~~ekA 819 (954)
-.++|+...|...+++.
T Consensus 665 dL~~G~~q~al~~lk~~ 681 (696)
T KOG2471|consen 665 DLMLGRSQDALARLKQC 681 (696)
T ss_pred HHhcCCCcchHHHHHhc
Confidence 77888888887776654
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0022 Score=72.38 Aligned_cols=361 Identities=15% Similarity=0.059 Sum_probs=209.9
Q ss_pred hhHHHHHHH--HHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 002199 443 AFQETCEMW--RLRGNQ-AYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG-RMREALEDCMMA 518 (954)
Q Consensus 443 ~~~~~ae~l--~~~G~~-~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg-~~eeAl~~~~kA 518 (954)
..+...++- .++|.. ++-..+++.|...+++|..+...-+.+ ......++..++.+|.... .+..|...++++
T Consensus 39 ~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f---ydvKf~a~SlLa~lh~~~~~s~~~~KalLrka 115 (629)
T KOG2300|consen 39 QISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF---YDVKFQAASLLAHLHHQLAQSFPPAKALLRKA 115 (629)
T ss_pred CChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH---HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 344555542 444543 345678888888888888877665521 1334567777888888777 777888888888
Q ss_pred HhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-chhhhhhH---------------HHHHHHHHHHHHHHh
Q 002199 519 ATVDPNFL----KVYMRAAKCHLVLGEIENAQHYYHKLLNS-AAAVCLDR---------------RITIEAADGLQKAQK 578 (954)
Q Consensus 519 Lel~P~~~----~a~~~LA~iy~~lG~~eeAl~~yekaL~l-~P~~~~~~---------------~~~~ea~~~l~~~~~ 578 (954)
+++....+ +..+.|+.++.-..++..|++.+.-..+. ++-..... ....+....+.....
T Consensus 116 ielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~q 195 (629)
T KOG2300|consen 116 IELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQ 195 (629)
T ss_pred HHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 88765543 45667788888888888887764321111 11000000 001111111111111
Q ss_pred HH---------------HHHHH-HHHHHHhcChHHHHHHHHHHHHHHhc-CCC------------CHHHHHHH------H
Q 002199 579 VT---------------EYINC-SGKLLEQKTSEAASSALERINEALSI-SSC------------SEKLLEMK------A 623 (954)
Q Consensus 579 ~~---------------~~l~~-a~~ll~~g~~~~a~eAL~~l~kaL~~-~P~------------~~~~~~~l------A 623 (954)
+. -++.+ ...|+..|+-..+..++..+++.+.. .+. .+....++ +
T Consensus 196 i~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqica 275 (629)
T KOG2300|consen 196 IWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICA 275 (629)
T ss_pred HHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHh
Confidence 00 01111 11233445555555666666665542 111 11111111 1
Q ss_pred HHH-------HHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 624 DAL-------YMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQV 696 (954)
Q Consensus 624 ~~~-------~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l 696 (954)
.+| +..|-+++|+.+-+++|....+.... +...--.....+-.+-.+..+-.-.|++.+|++.+..+.+.
T Consensus 276 LV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~---d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w 352 (629)
T KOG2300|consen 276 LVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQA---DLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNW 352 (629)
T ss_pred hhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccc---cchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 122 24567788888888887664322110 00000111112223345566777899999999998887664
Q ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHH
Q 002199 697 GSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIA 776 (954)
Q Consensus 697 ~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~e 776 (954)
....+.. +.-....+..+..+|.-...-+.|+.|...|..|+++.. .....+.+-.|+|..|+..++-+
T Consensus 353 ~~r~p~~----------~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~-~~dl~a~~nlnlAi~YL~~~~~e 421 (629)
T KOG2300|consen 353 CTRFPTP----------LLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE-SIDLQAFCNLNLAISYLRIGDAE 421 (629)
T ss_pred HHhCCch----------HHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh-HHHHHHHHHHhHHHHHHHhccHH
Confidence 3333221 111223345566788888889999999999999998752 12345667788999999988765
Q ss_pred HHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 777 DAIADCSLAMALDENY----------TKAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 777 eAi~~~ekAL~ldP~~----------~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
.-.+.++. +.|.+ ..+++..|...+..+++.+|...+.+.|++.
T Consensus 422 d~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 422 DLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 44333333 44542 4567888889999999999999999999986
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00088 Score=80.63 Aligned_cols=91 Identities=14% Similarity=0.070 Sum_probs=83.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002199 458 AYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHL 537 (954)
Q Consensus 458 ~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~ 537 (954)
....++|.+|+....+.++..|+.. -+....|.+++++|++++|..+++..-...+++...+--+-.||.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~----------~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~ 88 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNAL----------YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYR 88 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcH----------HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHH
Confidence 3567899999999999999999986 777888999999999999998888777788888889999999999
Q ss_pred HcCCHHHHHHHHHHHHhhchh
Q 002199 538 VLGEIENAQHYYHKLLNSAAA 558 (954)
Q Consensus 538 ~lG~~eeAl~~yekaL~l~P~ 558 (954)
.++++++|...|++++..+|.
T Consensus 89 d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHhhhhHHHHHHHHHHhhCCc
Confidence 999999999999999999996
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00048 Score=75.74 Aligned_cols=302 Identities=16% Similarity=0.045 Sum_probs=204.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHH
Q 002199 454 RGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF-LKVYMRA 532 (954)
Q Consensus 454 ~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~-~~a~~~L 532 (954)
.|.+..-.|+-..|..+-.++-++...+.. +.++..-+.+-+-.|+|+.|.+-|+..+. +|.. .-.+..|
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqe--------pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgL 160 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQE--------PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGL 160 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccch--------HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHH
Confidence 344445567778888888777755544431 35666667788888999999988887665 4432 1122222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcC
Q 002199 533 AKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSIS 612 (954)
Q Consensus 533 A~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~ 612 (954)
-.--..+|.++-|+.+-+++-...|.. ...+..........|+|+.+.+-++.-.....+.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l-------------------~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie 221 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQL-------------------PWAARATLEARCAAGDWDGALKLVDAQRAAKVIE 221 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCC-------------------chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Confidence 223346788999999988888877753 2233444455667888885444443333334444
Q ss_pred CCCH-----HHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 002199 613 SCSE-----KLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVAL 687 (954)
Q Consensus 613 P~~~-----~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl 687 (954)
+... .++...+..+. .-+...|...-.+++++.|+-.. +-..-+..|++.|+..++-
T Consensus 222 ~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvP-----------------aav~AAralf~d~~~rKg~ 283 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVP-----------------AAVVAARALFRDGNLRKGS 283 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccch-----------------HHHHHHHHHHhccchhhhh
Confidence 4332 12222222222 23577888888888888886644 3445678899999999999
Q ss_pred HHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHH
Q 002199 688 DLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAA 767 (954)
Q Consensus 688 ~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~ 767 (954)
.+++.+.+..|... ++..|....--+.++.-++++-.+. ...|++......++.
T Consensus 284 ~ilE~aWK~ePHP~-------------------------ia~lY~~ar~gdta~dRlkRa~~L~-slk~nnaes~~~va~ 337 (531)
T COG3898 284 KILETAWKAEPHPD-------------------------IALLYVRARSGDTALDRLKRAKKLE-SLKPNNAESSLAVAE 337 (531)
T ss_pred hHHHHHHhcCCChH-------------------------HHHHHHHhcCCCcHHHHHHHHHHHH-hcCccchHHHHHHHH
Confidence 99999988877432 4555665555566777777665553 223788889999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHhhhhHHH
Q 002199 768 ALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMI-RDYTQAASDLQRLVSILENQSAE 829 (954)
Q Consensus 768 ~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~l-g~~eeAi~~~ekAL~l~p~~~~~ 829 (954)
.-+.-|++..|..-.+.++.+.|. ..++..|+.+-... |+-.++...+-++++- |.++.|
T Consensus 338 aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A-PrdPaW 398 (531)
T COG3898 338 AALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA-PRDPAW 398 (531)
T ss_pred HHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC-CCCCcc
Confidence 999999999999999999999886 45677788888776 9999999999999875 444433
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.9e-07 Score=103.69 Aligned_cols=105 Identities=26% Similarity=0.394 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~ 527 (954)
++.+...++.++..+.|+.|+..|.+||+++|+.. ..+.+++.++++.++|..|+.++.+|++++|...+
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca----------~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K 73 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCA----------IYFANRALAHLKVESFGGALHDALKAIELDPTYIK 73 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcce----------eeechhhhhheeechhhhHHHHHHhhhhcCchhhh
Confidence 45677889999999999999999999999999997 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhh
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLD 562 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~ 562 (954)
+|++.|.+.+.++++.+|+..|+....+.|+....
T Consensus 74 ~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 74 AYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred eeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHH
Confidence 99999999999999999999999999999986443
|
|
| >TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-07 Score=110.91 Aligned_cols=65 Identities=34% Similarity=0.498 Sum_probs=57.8
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh---HHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD---QEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~---~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||.++++..+||++||+++++||||++.... ...++.+||++|++ +..|+.||.||..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSD-P~KRa~YD~fG~a 69 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSN-PKKRANYDKYGHD 69 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCC-HHHHHHHhhhccc
Confidence 58999999999999999999999999999999986543 35668899999986 8999999999864
|
This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.7e-05 Score=88.82 Aligned_cols=304 Identities=15% Similarity=0.052 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHH--hcC---
Q 002199 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRI-SLGRMREALEDCMMAA--TVD--- 522 (954)
Q Consensus 449 e~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~-~lg~~eeAl~~~~kAL--el~--- 522 (954)
..+...+-..+..+.|+..++.+...-.+...+. .++++++.+.+ +.|.+. -...++... ..+
T Consensus 18 ~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~----------~v~~n~av~~~~kt~~tq-~~~ll~el~aL~~~~~~ 86 (696)
T KOG2471|consen 18 YSLLCQAHEQFNNSEFDRCLELLQELETRGESSG----------PVLHNRAVVSYYKTGCTQ-HSVLLKELEALTADADA 86 (696)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHhcccccc----------ceeeehhhHHHHhcccch-hHHHHHHHHHHHHhhcc
Confidence 3455566777889999999999988888877776 55677766544 444432 122222211 111
Q ss_pred ----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 002199 523 ----------PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQ 592 (954)
Q Consensus 523 ----------P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~ 592 (954)
.....++++.|.+|+...++..|++........-.. +.........+.....++..
T Consensus 87 ~~~~~~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~--------------le~~~aa~v~~l~~~l~~~t 152 (696)
T KOG2471|consen 87 PGDVSSGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTES--------------LESSSAASVTLLSDLLAAET 152 (696)
T ss_pred ccchhcchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 123567889999999999999998887665543111 00000001111111111111
Q ss_pred cChHHHHHHHHHHHHHHhc-------------------CC-----------CCHHHHHHHHHHHHHccCHHHHHHHHHHh
Q 002199 593 KTSEAASSALERINEALSI-------------------SS-----------CSEKLLEMKADALYMLRKYEEAIQLCEHT 642 (954)
Q Consensus 593 g~~~~a~eAL~~l~kaL~~-------------------~P-----------~~~~~~~~lA~~~~~lg~~eeAi~~~eka 642 (954)
.+.+++..-+.++.+.+.. .| -...+.......|+++.+..-+....+.+
T Consensus 153 ~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~v 232 (696)
T KOG2471|consen 153 SQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHV 232 (696)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhh
Confidence 1112111111122111110 01 01223444455666777777776666666
Q ss_pred chhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCcchhhHHHHHHHHHHHHHHHH
Q 002199 643 LPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQ-VGSISDRYGSEILESSMSLAGTVRAL 721 (954)
Q Consensus 643 L~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~-l~p~~~~~~~~~l~~~~~l~~~~~~~ 721 (954)
..+..+... +.++.+..++..|++.+|.+.+...-- ..+... +.......
T Consensus 233 mn~a~~s~~-----------------~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~------------~T~q~~~c 283 (696)
T KOG2471|consen 233 MNIAQDSSM-----------------ALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGT------------ITPQLSSC 283 (696)
T ss_pred hhhcCCCcH-----------------HHHHHHHHHHHhcchHHHHHHHHhcccccccCcc------------ccchhhhh
Confidence 655543322 456778999999999999988865311 111100 00111223
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-hc--------c-----CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 722 LHHKSAGNEAFKSGRYTEAVEHYTVALS-TN--------I-----ESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787 (954)
Q Consensus 722 ~~~~~lG~~~~~~g~~eeAi~~y~kAL~-l~--------~-----~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ 787 (954)
..+.++|.++++.+.|.-++.+|.+||+ .+ | -.......++||.|..|+..|+.-.|.++|.++..
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 4578899999999999999999999996 21 1 01134678899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHh
Q 002199 788 LDENYTKAVSRRAALHEMI 806 (954)
Q Consensus 788 ldP~~~~al~~lA~ly~~l 806 (954)
..-.++..|+++|.+.++.
T Consensus 364 vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 364 VFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHhcCcHHHHHHHHHHHHH
Confidence 9999999999999988754
|
|
| >cd06257 DnaJ DnaJ domain or J-domain | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.5e-07 Score=73.81 Aligned_cols=50 Identities=46% Similarity=0.673 Sum_probs=42.6
Q ss_pred chhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC-h---hHHHHHHHHHHHCC
Q 002199 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE-Y---DQEQEIRKATKESP 916 (954)
Q Consensus 867 dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~-~---~~~e~~~~~~~~l~ 916 (954)
+||++|||.+.++..+|+++||+++++||||+... . .....+.+++++|+
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLS 54 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999985 2 34456667777764
|
DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.3e-05 Score=78.95 Aligned_cols=188 Identities=15% Similarity=0.090 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF- 525 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~- 525 (954)
-+..|+..|...++.|+|.+|+..|+.+....|..+.+ -.+...++.++++.++|++|+..+++-+.+.|++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~-------~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~ 105 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS-------EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP 105 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc-------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence 46789999999999999999999999999999987622 4788899999999999999999999999999876
Q ss_pred --HHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHhc
Q 002199 526 --LKVYMRAAKCHLVL--------GEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKA--QKVTEYINCSGKLLEQK 593 (954)
Q Consensus 526 --~~a~~~LA~iy~~l--------G~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~--~~~~~~l~~a~~ll~~g 593 (954)
..+++.+|.+++.. .-..+|+..|+..+...|+..... .+...+..+ .....-+..+.-|+..+
T Consensus 106 n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~----dA~~~i~~~~d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 106 NADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAP----DAKARIVKLNDALAGHEMAIARYYLKRG 181 (254)
T ss_pred ChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchh----hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788888887754 224678888999999999764332 222222222 22333455677788888
Q ss_pred ChHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 594 TSEAASSALERINEALSISSCS---EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 594 ~~~~a~eAL~~l~kaL~~~P~~---~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
.+- .|+..++.+++..|+. .+++..+..+|..+|-.++|... .++|..+..+
T Consensus 182 ~~~---AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N~p~ 236 (254)
T COG4105 182 AYV---AAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT-AKVLGANYPD 236 (254)
T ss_pred ChH---HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH-HHHHHhcCCC
Confidence 888 7888888888876654 67888889999999999988654 4455555433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.1e-06 Score=79.03 Aligned_cols=99 Identities=18% Similarity=0.035 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---c
Q 002199 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN---F 525 (954)
Q Consensus 449 e~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~---~ 525 (954)
++++++|..+-..|+.++|+.+|++++....... ....++..+|.+|..+|++++|+..+++++...|+ +
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~-------~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~ 74 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA-------DRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELN 74 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc
Confidence 5688999999999999999999999999765543 34579999999999999999999999999999888 7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 526 LKVYMRAAKCHLVLGEIENAQHYYHKLLN 554 (954)
Q Consensus 526 ~~a~~~LA~iy~~lG~~eeAl~~yekaL~ 554 (954)
..+...++.++..+|++++|+..+-.++.
T Consensus 75 ~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 75 AALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888899999999999999999988765
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.39 E-value=9e-07 Score=75.12 Aligned_cols=68 Identities=18% Similarity=0.088 Sum_probs=55.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002199 458 AYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKC 535 (954)
Q Consensus 458 ~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~i 535 (954)
++..|+|++|+..|++++..+|++. .+++.+|.||+..|++++|...+++++..+|+++.++..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~----------~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNP----------EARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSH----------HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 3677888888888888888888886 7888888888888888888888888888888887777776653
|
... |
| >KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.3e-07 Score=92.67 Aligned_cols=66 Identities=32% Similarity=0.491 Sum_probs=57.7
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC----hhHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE----YDQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~----~~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|-|+|||+++.+++.||||+||+|.+++||||.+. ....+.+.+|+..+++ ...|.-|..||.+
T Consensus 98 ~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD-~~sreN~ekYG~P 167 (230)
T KOG0721|consen 98 KFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTD-KKSRENWEKYGNP 167 (230)
T ss_pred cCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcc-hhhHHHHHHhCCC
Confidence 5678999999999999999999999999999999654 3445788899999997 7788899999966
|
|
| >smart00271 DnaJ DnaJ molecular chaperone homology domain | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.2e-07 Score=74.42 Aligned_cols=51 Identities=45% Similarity=0.640 Sum_probs=44.5
Q ss_pred chhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC-----hhHHHHHHHHHHHCCC
Q 002199 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE-----YDQEQEIRKATKESPQ 917 (954)
Q Consensus 867 dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~-----~~~~e~~~~~~~~l~~ 917 (954)
+||++|||.++++..+|+++|+++++++|||+... ......+.++++.|.+
T Consensus 2 ~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSD 57 (60)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcC
Confidence 69999999999999999999999999999999883 2445677788888865
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.8e-06 Score=79.19 Aligned_cols=106 Identities=15% Similarity=0.058 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF-- 525 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~-- 525 (954)
+..++..|...++.|+|.+|++.|+......|..+.+ ..+.+.++.+|+..++|++|+..+++.|+++|++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya-------~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA-------EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 4678999999999999999999999999999886532 3788999999999999999999999999999876
Q ss_pred -HHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHhhchhhh
Q 002199 526 -LKVYMRAAKCHLVLGE---------------IENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 526 -~~a~~~LA~iy~~lG~---------------~eeAl~~yekaL~l~P~~~ 560 (954)
..+++.+|.+++.+.. ..+|+..|++++...|+..
T Consensus 83 vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 83 VDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred ccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 5689999999999887 8899999999999999763
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.35 E-value=2e-06 Score=74.14 Aligned_cols=70 Identities=23% Similarity=0.219 Sum_probs=55.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002199 455 GNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAK 534 (954)
Q Consensus 455 G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~ 534 (954)
...|++.++|++|+.++++++.++|.+. .+|..+|.++..+|++.+|+.+|+++++..|+...+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~----------~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDP----------ELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccc----------hhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 4567788888888888888888888876 788888888888888888888888888888887776665543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-05 Score=74.59 Aligned_cols=95 Identities=23% Similarity=0.284 Sum_probs=87.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHH
Q 002199 726 SAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY----TKAVSRRAA 801 (954)
Q Consensus 726 ~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~----~~al~~lA~ 801 (954)
..|..+...|+.+.|++.|.++|.+. |..+.+|+|+|.++.-+|+.++|+.++++|+++.... ..++..+|.
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~----P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLA----PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhc----ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 36888889999999999999999999 8899999999999999999999999999999997543 468899999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHhh
Q 002199 802 LHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 802 ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
+|..+|+.+.|..+|+.+-++-.
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCC
Confidence 99999999999999999998843
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.8e-06 Score=85.33 Aligned_cols=108 Identities=24% Similarity=0.318 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------ccCC------chhhHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALST--------NIES------RPFAAICFCNRAAALQALGQIADAIADCSL 784 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l--------~~~~------~p~~a~~~~~lA~~y~~lg~~eeAi~~~ek 784 (954)
..+..+...|+-++.+|+|.+|+..|..|+.. .|.. ......++.|.+.|++..|+|-++++.+..
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 33456777899999999999999999999764 1211 133456789999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 785 AMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 785 AL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
+|..+|.+..||+.+|.++...=+..+|..+|.++|+++|..
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 999999999999999999999999999999999999997654
|
|
| >PHA02624 large T antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.7e-07 Score=106.73 Aligned_cols=81 Identities=14% Similarity=0.263 Sum_probs=67.0
Q ss_pred CcchhhhhccccCC--CHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHCCCCCcccccc--ccc---CCCCCCCCC
Q 002199 865 PLDFYLILGVKASD--TAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQNSHYGRSS--DAY---GYACRSSRR 937 (954)
Q Consensus 865 ~~dyYkiLgv~~~a--~~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l~~~~~~r~~y--D~~---g~~~~~~~~ 937 (954)
..++|++|||++++ +..+||+|||++|++|||||+.+....+++.++++++.+ +..+..| |.. |. ...+.
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d-~~k~~r~~fd~~~~~~v--~~~~~ 86 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQE-GVKSARQSFGTQDSSEI--PTYGT 86 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhc-HHHhhhcccccccccCC--CCCcc
Confidence 34689999999999 999999999999999999999888888999999999986 6666666 433 22 23466
Q ss_pred CcccccccccC
Q 002199 938 QSRQDNWKTYG 948 (954)
Q Consensus 938 ~~~~~~~~~~~ 948 (954)
+.|.++|+.|.
T Consensus 87 ~~w~~ww~~f~ 97 (647)
T PHA02624 87 PEWEQWWEEFN 97 (647)
T ss_pred ccHHHHHHHhh
Confidence 77999998874
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.3e-05 Score=76.33 Aligned_cols=98 Identities=17% Similarity=0.050 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDEN---YTKAVSRR 799 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~---~~~al~~l 799 (954)
+++++|..+...|+.++|+.+|++++...... +....++..+|.++..+|++++|+..+++++...|+ +..+...+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~-~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSG-ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 46678999999999999999999999975332 566789999999999999999999999999999888 78888899
Q ss_pred HHHHHHhcCHHHHHHHHHHHHH
Q 002199 800 AALHEMIRDYTQAASDLQRLVS 821 (954)
Q Consensus 800 A~ly~~lg~~eeAi~~~ekAL~ 821 (954)
+.++..+|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999877764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-05 Score=91.48 Aligned_cols=119 Identities=18% Similarity=0.085 Sum_probs=104.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 002199 674 SKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIE 753 (954)
Q Consensus 674 g~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~ 753 (954)
-.++...++++.|+..+++..+.+|.. ...++.+++..++..+|+..+.+++...
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pev-----------------------~~~LA~v~l~~~~E~~AI~ll~~aL~~~-- 230 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPEV-----------------------AVLLARVYLLMNEEVEAIRLLNEALKEN-- 230 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCcH-----------------------HHHHHHHHHhcCcHHHHHHHHHHHHHhC--
Confidence 344556789999999999998877632 2236888888999999999999999888
Q ss_pred CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002199 754 SRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRL 819 (954)
Q Consensus 754 ~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekA 819 (954)
|.++.++...|..++..++++.|+..+++++.+.|+....|+.||.+|..+|+++.|+..++.+
T Consensus 231 --p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 231 --PQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 7779999999999999999999999999999999999999999999999999999999887744
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.9e-06 Score=75.39 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 756 PFAAICFCNRAAALQALGQIADAIADCSLAMALD-------ENYTKAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 756 p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld-------P~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
|..+.++.++|.+|..+|+|++|+.+|++++.+. |..+.++.++|.++..+|++++|+++|++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4555666666666666666666666666666541 1224566666777777777777777777776664
|
... |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.3e-05 Score=77.63 Aligned_cols=104 Identities=21% Similarity=0.162 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYT---KAVSRR 799 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~---~al~~l 799 (954)
.++..|...++.|+|.+|++.|+......|-. +....+.+.++.+|+..+++++|+..+++-|+++|.++ .+++.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g-~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFG-EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 46678999999999999999999999888654 66778999999999999999999999999999999874 689999
Q ss_pred HHHHHHhcC---------------HHHHHHHHHHHHHHhhhhH
Q 002199 800 AALHEMIRD---------------YTQAASDLQRLVSILENQS 827 (954)
Q Consensus 800 A~ly~~lg~---------------~eeAi~~~ekAL~l~p~~~ 827 (954)
|.+++.+.. ..+|...|+++++..|+..
T Consensus 91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 999999887 8999999999999977643
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.1e-06 Score=86.83 Aligned_cols=102 Identities=15% Similarity=0.094 Sum_probs=95.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HH
Q 002199 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF---LK 527 (954)
Q Consensus 451 l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~---~~ 527 (954)
+|..|..++..|+|..|+..|..-|+..|+... .+.+++.||.+++.+|+|+.|...|..++.-.|+. ++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~-------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApd 216 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY-------TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPD 216 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc-------cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChH
Confidence 899999999999999999999999999999752 35899999999999999999999999999988765 78
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
+++.+|.|...+|+.++|...|+++++..|..
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 89999999999999999999999999999975
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.27 E-value=1e-05 Score=92.21 Aligned_cols=119 Identities=23% Similarity=0.333 Sum_probs=102.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcC
Q 002199 533 AKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSIS 612 (954)
Q Consensus 533 A~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~ 612 (954)
-.++...++++.|+..|++..+.+|+. .+.++..++..++.. +|+..+.+++...
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pev----------------------~~~LA~v~l~~~~E~---~AI~ll~~aL~~~ 230 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPEV----------------------AVLLARVYLLMNEEV---EAIRLLNEALKEN 230 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCcH----------------------HHHHHHHHHhcCcHH---HHHHHHHHHHHhC
Confidence 445566789999999999999988853 233455555555444 8999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002199 613 SCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQK 692 (954)
Q Consensus 613 P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~k 692 (954)
|.+..++...|..++..++++.|+.+.++++.+.|.++. .|+.|+.+|..+|+++.|+..++.
T Consensus 231 p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~-----------------~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 231 PQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFE-----------------TWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHH-----------------HHHHHHHHHHhcCCHHHHHHHHhc
Confidence 999999999999999999999999999999999998876 799999999999999999988875
Q ss_pred H
Q 002199 693 L 693 (954)
Q Consensus 693 a 693 (954)
+
T Consensus 294 ~ 294 (395)
T PF09295_consen 294 C 294 (395)
T ss_pred C
Confidence 4
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00048 Score=72.21 Aligned_cols=243 Identities=17% Similarity=0.194 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 492 VLCYSNRAATRISLGRMREALEDCMMAATVDPNF-------------------LKVYMRAAKCHLVLGEIENAQHYYHKL 552 (954)
Q Consensus 492 a~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~-------------------~~a~~~LA~iy~~lG~~eeAl~~yeka 552 (954)
..+|..+-.++.++..+++|...+...-++|..+ ....+..|.+...+|...+.+.-+...
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 4778888888999999999988877666654211 122344566777778777776666554
Q ss_pred HhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Q 002199 553 LNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKY 632 (954)
Q Consensus 553 L~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~ 632 (954)
+.. ......-++.+..++ ..+..+++-+ ..+.+.++.++.-+++|
T Consensus 149 ~~~---------------------------V~~ii~~~e~~~~~E--Ssv~lW~KRl------~~Vmy~~~~~llG~kEy 193 (366)
T KOG2796|consen 149 KTV---------------------------VSKILANLEQGLAEE--SSIRLWRKRL------GRVMYSMANCLLGMKEY 193 (366)
T ss_pred HHH---------------------------HHHHHHHHHhccchh--hHHHHHHHHH------HHHHHHHHHHHhcchhh
Confidence 432 111222222222211 3444444433 24567778888899999
Q ss_pred HHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHH
Q 002199 633 EEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSM 712 (954)
Q Consensus 633 eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~ 712 (954)
.-.+..+.++++.+|..... ....||.+.++.|+.+.|..+++...+...
T Consensus 194 ~iS~d~~~~vi~~~~e~~p~----------------L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-------------- 243 (366)
T KOG2796|consen 194 VLSVDAYHSVIKYYPEQEPQ----------------LLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-------------- 243 (366)
T ss_pred hhhHHHHHHHHHhCCcccHH----------------HHHHHHHHHHhcccHHHHHHHHHHHHHHHh--------------
Confidence 99999999999877533221 234678888999999999998887653211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 002199 713 SLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY 792 (954)
Q Consensus 713 ~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~ 792 (954)
.+.........+.+.+.++.-+++|..|...|.+++..+ +.++.+.++.|.|++.+|+..+|++..+.++...|..
T Consensus 244 kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D----~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 244 KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD----PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC----CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 111122334566677888888889999999999888888 7788888889999999999999999999998888864
Q ss_pred H---HHHHHHHHHH
Q 002199 793 T---KAVSRRAALH 803 (954)
Q Consensus 793 ~---~al~~lA~ly 803 (954)
. ..++++-.+|
T Consensus 320 ~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 320 YLHESVLFNLTTMY 333 (366)
T ss_pred chhhhHHHHHHHHH
Confidence 2 3344444443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.001 Score=73.30 Aligned_cols=266 Identities=15% Similarity=0.096 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAAT--RISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 449 e~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~--y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
-.+...+...+-.|+|+.|..-|+..+. +|.. ..+..+|.. -..+|.++-|+.+.+.+.+..|...
T Consensus 121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-----------RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~ 188 (531)
T COG3898 121 LIHLLEAQAALLEGDYEDARKKFEAMLD-DPET-----------RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP 188 (531)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH-----------HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc
Confidence 3445566777889999999999997765 5553 344444443 3478999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---chhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNS---AAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l---~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
+++...-...+..|+++.|++..+..... .++.. .-.+...+...+..++.. +.. .|..
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~a--------------eR~rAvLLtAkA~s~lda-dp~---~Ar~ 250 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVA--------------ERSRAVLLTAKAMSLLDA-DPA---SARD 250 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhH--------------HHHHHHHHHHHHHHHhcC-ChH---HHHH
Confidence 99988888899999999999999876552 11110 000111112222222222 222 6778
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCH
Q 002199 604 RINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKL 683 (954)
Q Consensus 604 ~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~ 683 (954)
...+++++.|+....-..-+..|+..|+..++-.+++.+.+..|.- .++.+|....--
T Consensus 251 ~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP----------------------~ia~lY~~ar~g 308 (531)
T COG3898 251 DALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP----------------------DIALLYVRARSG 308 (531)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh----------------------HHHHHHHHhcCC
Confidence 8888999999999999999999999999999999999999988743 244555544444
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHH
Q 002199 684 EVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFC 763 (954)
Q Consensus 684 eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~ 763 (954)
+.++.-++++-.+....++ ........+...+..|+|..|...-+.+....| ...+|.
T Consensus 309 dta~dRlkRa~~L~slk~n-----------------naes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-----res~~l 366 (531)
T COG3898 309 DTALDRLKRAKKLESLKPN-----------------NAESSLAVAEAALDAGEFSAARAKAEAAAREAP-----RESAYL 366 (531)
T ss_pred CcHHHHHHHHHHHHhcCcc-----------------chHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-----hhhHHH
Confidence 5566666665443221111 123444567888899999999999999998873 345666
Q ss_pred HHHHHHHHh-cCHHHHHHHHHHHHHh
Q 002199 764 NRAAALQAL-GQIADAIADCSLAMAL 788 (954)
Q Consensus 764 ~lA~~y~~l-g~~eeAi~~~ekAL~l 788 (954)
.++.+.... |+-.++..++.+++.-
T Consensus 367 LlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 367 LLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHhhccCchHHHHHHHHHHhcC
Confidence 678777665 9999999999999874
|
|
| >PTZ00100 DnaJ chaperone protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.4e-06 Score=81.02 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=47.3
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESP 916 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l~ 916 (954)
..++|++|||.++++..+|+++||+++++||||+.......+++.+++++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 4679999999999999999999999999999999877778889999998873
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00054 Score=72.24 Aligned_cols=257 Identities=11% Similarity=0.059 Sum_probs=170.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002199 456 NQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKC 535 (954)
Q Consensus 456 ~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~i 535 (954)
+.+|-.|+|..+|..-++.-... ... .....++.+|+.+|+|..-+......- .....+...++..
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~----------e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~ 81 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDV----------ELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEY 81 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chh----------HHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHH
Confidence 45677899998887766554433 222 677778889999999876665543332 1223344445554
Q ss_pred HHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCC
Q 002199 536 HLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCS 615 (954)
Q Consensus 536 y~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~ 615 (954)
+..-++.+.-+....+.+...... ........-+..++..+++++|.+++.. -..
T Consensus 82 ~~~e~~~~~~~~~l~E~~a~~~~~-----------------sn~i~~l~aa~i~~~~~~~deAl~~~~~--------~~~ 136 (299)
T KOG3081|consen 82 LELESNKKSILASLYELVADSTDG-----------------SNLIDLLLAAIIYMHDGDFDEALKALHL--------GEN 136 (299)
T ss_pred hhCcchhHHHHHHHHHHHHhhccc-----------------hhHHHHHHhhHHhhcCCChHHHHHHHhc--------cch
Confidence 444444444443333322211100 0012234446677788899955544432 234
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHH----HcCCHHHHHHHHH
Q 002199 616 EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYF----CIGKLEVALDLLQ 691 (954)
Q Consensus 616 ~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~----~lG~~eeAl~~l~ 691 (954)
.++...--.++.++.+.+-|...++++.+++.+. .+..||.++. ..+++.+|.-+|+
T Consensus 137 lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~-------------------tLtQLA~awv~la~ggek~qdAfyife 197 (299)
T KOG3081|consen 137 LEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA-------------------TLTQLAQAWVKLATGGEKIQDAFYIFE 197 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH-------------------HHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 5566677789999999999999999999988654 2333444444 3346889999999
Q ss_pred HHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH
Q 002199 692 KLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA 771 (954)
Q Consensus 692 kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~ 771 (954)
+.-...+..+ ..+..++.+.+.+++|++|...++.||..+ +..+..+.|+-.+-..
T Consensus 198 E~s~k~~~T~--------------------~llnG~Av~~l~~~~~eeAe~lL~eaL~kd----~~dpetL~Nliv~a~~ 253 (299)
T KOG3081|consen 198 ELSEKTPPTP--------------------LLLNGQAVCHLQLGRYEEAESLLEEALDKD----AKDPETLANLIVLALH 253 (299)
T ss_pred HHhcccCCCh--------------------HHHccHHHHHHHhcCHHHHHHHHHHHHhcc----CCCHHHHHHHHHHHHH
Confidence 8876433332 245567899999999999999999999998 7789999999999999
Q ss_pred hcCHHHHHHH-HHHHHHhCCCCHH
Q 002199 772 LGQIADAIAD-CSLAMALDENYTK 794 (954)
Q Consensus 772 lg~~eeAi~~-~ekAL~ldP~~~~ 794 (954)
+|.-.++... +.+....+|+++.
T Consensus 254 ~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 254 LGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred hCCChHHHHHHHHHHHhcCCcchH
Confidence 9987776654 4555566787764
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0004 Score=73.49 Aligned_cols=189 Identities=17% Similarity=0.139 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhh
Q 002199 579 VTEYINCSGKLLEQKTSEAASSALERINEALSISSC---SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLA 655 (954)
Q Consensus 579 ~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~---~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~ 655 (954)
+..++..+...+..|+|+ +|+..|+.+....|. ...+.+.++.++++.++|++|+...++-+.+.|.+...
T Consensus 34 ~~~LY~~g~~~L~~gn~~---~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~--- 107 (254)
T COG4105 34 ASELYNEGLTELQKGNYE---EAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA--- 107 (254)
T ss_pred HHHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh---
Confidence 567899999999999999 788888888777654 57899999999999999999999999999999987542
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002199 656 DNGSVTYSLARLWRWRLISKSYFCIGK--------LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSA 727 (954)
Q Consensus 656 ~~~~~~~~~~~l~a~~~Lg~~y~~lG~--------~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~l 727 (954)
-+++++.|.+++..=+ ..+|+..|+..++..|+..-.. +....+..+.. ..+..-...
T Consensus 108 -----------dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~-dA~~~i~~~~d--~LA~~Em~I 173 (254)
T COG4105 108 -----------DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAP-DAKARIVKLND--ALAGHEMAI 173 (254)
T ss_pred -----------hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHHHH--HHHHHHHHH
Confidence 2467788888763322 4578888889999888775522 11111111111 111112335
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 002199 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALD 789 (954)
Q Consensus 728 G~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld 789 (954)
|..|.+.|.|..|+..++.+++.-++. +....++..+..+|..+|-.++|... .++|..+
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t-~~~~eaL~~l~eaY~~lgl~~~a~~~-~~vl~~N 233 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDT-SAVREALARLEEAYYALGLTDEAKKT-AKVLGAN 233 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHHhCChHHHHHH-HHHHHhc
Confidence 667777777777777777777664322 44555666666677777776666544 3344443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.4e-06 Score=71.36 Aligned_cols=68 Identities=28% Similarity=0.329 Sum_probs=41.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 729 NEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 729 ~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
.+|+..++|++|++++++++.++ |.++.++..+|.++..+|++.+|+..|++++++.|++..+...++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD----PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC----cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 45556666666666666666666 555666666666666666666666666666666666655544443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0001 Score=86.82 Aligned_cols=82 Identities=16% Similarity=0.054 Sum_probs=64.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
|.--|..+...|+.+.|+.+|..|-. |+.+-.++.-+|+.++|-+..++ ..+..|.|.+|+.|
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D------------~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKD------------YFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMY 977 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhh------------hhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHh
Confidence 34457788889999999999988743 33445666678899988766554 56778899999999
Q ss_pred HHhcCHHHHHHHHHHHHHH
Q 002199 804 EMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 804 ~~lg~~eeAi~~~ekAL~l 822 (954)
...|+..+|+..|.+|-..
T Consensus 978 En~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 9999999999999877555
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00073 Score=84.23 Aligned_cols=219 Identities=16% Similarity=0.110 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCc----HHHHHHHHHHHHHc
Q 002199 465 TEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT-VDPNF----LKVYMRAAKCHLVL 539 (954)
Q Consensus 465 ~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe-l~P~~----~~a~~~LA~iy~~l 539 (954)
.+..+-|.+.+..+|+.. ..|...-..++.+++.++|.+.+++||. +++.. ...|..+-++...-
T Consensus 1441 pesaeDferlvrssPNSS----------i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y 1510 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSS----------ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY 1510 (1710)
T ss_pred CcCHHHHHHHHhcCCCcc----------hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh
Confidence 345678899999999987 8999999999999999999999999996 44433 33444444444445
Q ss_pred CCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHH
Q 002199 540 GEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLL 619 (954)
Q Consensus 540 G~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~ 619 (954)
|.-+.-.+.|++|.+.... ...+..+...|..-..++ +|.++|+..++...+...+|
T Consensus 1511 G~eesl~kVFeRAcqycd~--------------------~~V~~~L~~iy~k~ek~~---~A~ell~~m~KKF~q~~~vW 1567 (1710)
T KOG1070|consen 1511 GTEESLKKVFERACQYCDA--------------------YTVHLKLLGIYEKSEKND---EADELLRLMLKKFGQTRKVW 1567 (1710)
T ss_pred CcHHHHHHHHHHHHHhcch--------------------HHHHHHHHHHHHHhhcch---hHHHHHHHHHHHhcchhhHH
Confidence 6666777888888775432 344666777777777888 67778888887777889999
Q ss_pred HHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002199 620 EMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSI 699 (954)
Q Consensus 620 ~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~ 699 (954)
.++|..++...+-++|..++.+||+.-|.... +-.....+.+-++.|+.+.+..+|+-.+..+|.
T Consensus 1568 ~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH---------------v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1568 IMYADFLLRQNEAEAARELLKRALKSLPKQEH---------------VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhhcchhhh---------------HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc
Confidence 99999999999999999999999999987311 113345688899999999999999999988775
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 700 SDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 700 ~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~ 751 (954)
-.. .|.-....-.+.++.+.+...|++++.+.
T Consensus 1633 RtD--------------------lW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1633 RTD--------------------LWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred chh--------------------HHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 433 45555666678899999999999999875
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.2e-05 Score=87.83 Aligned_cols=74 Identities=15% Similarity=0.060 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 442 AAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
...|..+++|.++|..|+..|+|++|+.+|++||+++|++.. ...+|+|+|.||..+|++++|+.++++|+++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae-------A~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE-------AQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356888999999999999999999999999999999999851 0135999999999999999999999999998
Q ss_pred C
Q 002199 522 D 522 (954)
Q Consensus 522 ~ 522 (954)
.
T Consensus 142 s 142 (453)
T PLN03098 142 Y 142 (453)
T ss_pred c
Confidence 3
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.8e-06 Score=71.25 Aligned_cols=65 Identities=25% Similarity=0.168 Sum_probs=36.3
Q ss_pred HHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 732 FKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 732 ~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
+..|+|++|+..|++++..+ |.+..+++.+|.+|...|++++|...+++++..+|+++.++..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN----PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT----TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34555556666666655555 455555555556666666666666666555555555555444444
|
... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.8e-05 Score=84.32 Aligned_cols=104 Identities=17% Similarity=0.187 Sum_probs=94.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY---TKAVSRRA 800 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~---~~al~~lA 800 (954)
+++.+..++..|+|..|...|..-+...|.. +..+.+++.||.+++.+|+|++|...|..++.-.|+. +++++.+|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s-~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNS-TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 5667888899999999999999999998766 6788999999999999999999999999999987765 78899999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 801 ALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 801 ~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
.+...+|+.++|...|+++++-+|+..-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999999999999999776543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0085 Score=73.53 Aligned_cols=350 Identities=11% Similarity=-0.019 Sum_probs=205.8
Q ss_pred hhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 443 AFQETCEMWRLRGNQAY-KNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~-~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
.....+.....+|..++ ...+++.|..++++++.+...+. ..+....+.+.++.+|.+.+... |+..++++++.
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~----~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~ 128 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHR----LTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIED 128 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc----hHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHH
Confidence 34567888899999988 78999999999999999886632 12223556667789999888888 99999999987
Q ss_pred CCC---c-HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCh
Q 002199 522 DPN---F-LKVYMRA--AKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTS 595 (954)
Q Consensus 522 ~P~---~-~~a~~~L--A~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~ 595 (954)
... . ....+++ ...+...+++..|++.++.+..+.... .+ ....+...+..+...+..+..
T Consensus 129 ~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~-~d------------~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 129 SETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR-GD------------PAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred HhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc-CC------------HHHHHHHHHHHHHHHhcCCCc
Confidence 544 2 2222232 333333479999999999988754210 01 111233344445555566656
Q ss_pred HHHHHHHHHHHHHHh---cCC----CCHHHHHHH--HHHHHHccCHHHHHHHHHHhch---hhhhhh--hh------hhh
Q 002199 596 EAASSALERINEALS---ISS----CSEKLLEMK--ADALYMLRKYEEAIQLCEHTLP---VAEKNF--AS------VLA 655 (954)
Q Consensus 596 ~~a~eAL~~l~kaL~---~~P----~~~~~~~~l--A~~~~~lg~~eeAi~~~ekaL~---l~p~~~--~~------~~~ 655 (954)
+++.+.+........ .+| ....++..+ --+++..|++..+...+++.-+ ...... .. ...
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l 275 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPL 275 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEe
Confidence 533333332211111 111 112233333 3356677887777666554432 221111 00 000
Q ss_pred c---------c-Ccc----hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------cchhhHHHHHHHHH
Q 002199 656 D---------N-GSV----TYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSIS-------DRYGSEILESSMSL 714 (954)
Q Consensus 656 ~---------~-~~~----~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~-------~~~~~~~l~~~~~l 714 (954)
. . ..+ +.....+..|..-|..+...+..++|.++++++++..... .......+.....+
T Consensus 276 ~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~ 355 (608)
T PF10345_consen 276 NIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQW 355 (608)
T ss_pred ecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHH
Confidence 0 0 000 1122223456666888888888889999998887742211 11111111111122
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC-----chhhHHHHHHHHHHHHHhcCHHHHHHHHH------
Q 002199 715 AGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES-----RPFAAICFCNRAAALQALGQIADAIADCS------ 783 (954)
Q Consensus 715 ~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~-----~p~~a~~~~~lA~~y~~lg~~eeAi~~~e------ 783 (954)
.... ....+...+...+-.+++..|......+....... ....+.+++..|..+...|+.+.|+..|.
T Consensus 356 ~~~l-~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~ 434 (608)
T PF10345_consen 356 LRYL-QCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLL 434 (608)
T ss_pred HHHH-HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhh
Confidence 1111 22344557888899999999999999887664221 23568889999999999999999999998
Q ss_pred --HHHHhCCCC---HHHHHHHHHHHHHhcCHHH
Q 002199 784 --LAMALDENY---TKAVSRRAALHEMIRDYTQ 811 (954)
Q Consensus 784 --kAL~ldP~~---~~al~~lA~ly~~lg~~ee 811 (954)
.+....+.. .-+..++..++...+.-..
T Consensus 435 ~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 435 CEAANRKSKFRELYILAALNLAIILQYESSRDD 467 (608)
T ss_pred hhhhccCCcchHHHHHHHHHHHHHhHhhcccch
Confidence 333334332 3455666777766665333
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.6e-06 Score=73.60 Aligned_cols=75 Identities=17% Similarity=0.117 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
+|..+..+..+|..|+..|+|++|+.+|++++++..... .....++.++.++|.+|..+|++++|++.+++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLG---DDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---THHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 367889999999999999999999999999998721111 112235889999999999999999999999999876
|
... |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.1e-06 Score=96.94 Aligned_cols=102 Identities=30% Similarity=0.432 Sum_probs=95.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
+...++.++..+.|+.|+..|.+||+++ |+.+.++.+++.++.+.++|..|+.++.+||+++|.+..+|+.+|.++
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ld----pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELD----PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcC----CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 4457888899999999999999999999 889999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHhhhhHHH
Q 002199 804 EMIRDYTQAASDLQRLVSILENQSAE 829 (954)
Q Consensus 804 ~~lg~~eeAi~~~ekAL~l~p~~~~~ 829 (954)
..++++.+|...|+....+.|++...
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHH
Confidence 99999999999999999996655543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.7e-06 Score=93.83 Aligned_cols=68 Identities=24% Similarity=0.191 Sum_probs=50.2
Q ss_pred chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 755 RPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKA---VSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 755 ~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~a---l~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
.|..+..|+++|.+|..+|+|++|+..|+++|+++|++..+ |+++|.+|..+|++++|+.+|++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36677777777777777777777777777777777777644 777777777777777777777777776
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00011 Score=76.71 Aligned_cols=139 Identities=10% Similarity=0.050 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
..+.+..++...++|.-.+..+.+.++.+|.... .....+|.+.++.|+.+.|..+|+..-
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p-------------------~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP-------------------QLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccH-------------------HHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 4566778888999999999999999997754433 123457999999999999999999654
Q ss_pred hhcc--CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 749 STNI--ESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 749 ~l~~--~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
+.+. +.......++.+.+.+|.-.++|.+|...|.+++..||.++.+..+.|.|++.+|+..+|++.++.+++++|..
T Consensus 240 k~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 240 KVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 4321 12246677888999999999999999999999999999999999999999999999999999999999997753
|
|
| >COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.2e-06 Score=90.48 Aligned_cols=63 Identities=38% Similarity=0.525 Sum_probs=56.3
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh-----hHHHHHHHHHHHCCCCCccccccccc
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY-----DQEQEIRKATKESPQNSHYGRSSDAY 928 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~-----~~~e~~~~~~~~l~~~~~~r~~yD~~ 928 (954)
..+||.+|||.++++..+|+++||+++++||||++... .....|.+++.+|++ +..|+.||..
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd-~~~r~~yd~~ 72 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSD-PERRAEYDKI 72 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhC-HHHHHHhhhh
Confidence 56899999999999999999999999999999998754 445678899999986 8899999986
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00022 Score=81.51 Aligned_cols=96 Identities=13% Similarity=0.028 Sum_probs=84.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002199 456 NQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKC 535 (954)
Q Consensus 456 ~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~i 535 (954)
-.+..+|+..+|+.||..++-..|.... -.++..+|.++.+.|...+|--.+..|+.-.|....-++.+|.+
T Consensus 221 ~YWR~~G~~~~A~~Ca~~a~hf~~~h~k--------di~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i 292 (886)
T KOG4507|consen 221 FYWRIKGEPYQAVECAMRALHFSSRHNK--------DIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNI 292 (886)
T ss_pred HHHHHcCChhhhhHHHHHHhhhCCcccc--------cchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHH
Confidence 3344679999999999999999877542 27888999999999999999999999999888888889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhchhh
Q 002199 536 HLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 536 y~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
+..++.|...+..|..+++..|..
T Consensus 293 ~aml~~~N~S~~~ydha~k~~p~f 316 (886)
T KOG4507|consen 293 YAMLGEYNHSVLCYDHALQARPGF 316 (886)
T ss_pred HHHHhhhhhhhhhhhhhhccCcch
Confidence 999999999999999999988854
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.9e-06 Score=90.77 Aligned_cols=108 Identities=20% Similarity=0.308 Sum_probs=100.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 440 ~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
.+.+..+.+......+..++..|.++.||+.|..+|.++|... .+|..++.+++.+++...|+.+|..|+
T Consensus 106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a----------~l~~kr~sv~lkl~kp~~airD~d~A~ 175 (377)
T KOG1308|consen 106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLA----------ILYAKRASVFLKLKKPNAAIRDCDFAI 175 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchh----------hhcccccceeeeccCCchhhhhhhhhh
Confidence 4556667777888889999999999999999999999999986 999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhch
Q 002199 520 TVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAA 557 (954)
Q Consensus 520 el~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P 557 (954)
+++|+....|-.+|.+...+|++++|..++..+++++-
T Consensus 176 ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 176 EINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred ccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999754
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0028 Score=76.44 Aligned_cols=193 Identities=17% Similarity=0.069 Sum_probs=130.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..|...-+....|..+++.|++++|..+++..-...+++. ..+--+-.||..++++++|...|++++..+
T Consensus 38 k~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~----------~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~ 107 (932)
T KOG2053|consen 38 KHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDD----------LTLQFLQNVYRDLGKLDEAVHLYERANQKY 107 (932)
T ss_pred HCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCch----------HHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 3455666777889999999999999988776666666654 788889999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhH--------------------HHHHHHHHHHH-------H
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDR--------------------RITIEAADGLQ-------K 575 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~--------------------~~~~ea~~~l~-------~ 575 (954)
|. .+.++.+-.+|.+.+.|.+=.+.--+.-+.-|....-. ..+.-+....+ +
T Consensus 108 P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk 186 (932)
T KOG2053|consen 108 PS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGK 186 (932)
T ss_pred Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCc
Confidence 99 88888899999998888754443333333444332111 11111111111 1
Q ss_pred HHhHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 576 AQKVTEYINCSGKLLEQKTSEAASSALERINE--ALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 576 ~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~k--aL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
.....+..-....+..++.++ +|++.+.. +-...+.+..+.......+..+++|.+-.++..+++..++++
T Consensus 187 ~~s~aE~~Lyl~iL~~~~k~~---eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 187 IESEAEIILYLLILELQGKYQ---EALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred cchHHHHHHHHHHHHhcccHH---HHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 112233333344455677788 55555522 223345555566677788888899998888888888888776
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0014 Score=67.78 Aligned_cols=195 Identities=16% Similarity=0.131 Sum_probs=122.3
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
...+.++.+..-|+.|--.++|..|=..|-++-...-... .....+..|...+.||-+. +..+|+.++++++++.
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~----skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIy 103 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAG----SKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIY 103 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC----CchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHH
Confidence 4456677777778888888888888888888876543322 1123356777777776655 8889999988888765
Q ss_pred CCc------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCh
Q 002199 523 PNF------LKVYMRAAKCHLVL-GEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTS 595 (954)
Q Consensus 523 P~~------~~a~~~LA~iy~~l-G~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~ 595 (954)
.+. +.-+..+|.+|..- .++++|+.+|+++-+. +...
T Consensus 104 t~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~----------------------------------yk~e-- 147 (288)
T KOG1586|consen 104 TDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY----------------------------------YKGE-- 147 (288)
T ss_pred HhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH----------------------------------Hcch--
Confidence 432 12233444444432 4555555555544332 2111
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHH
Q 002199 596 EAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISK 675 (954)
Q Consensus 596 ~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~ 675 (954)
+.... .-..++..|..-..+++|.+||..|+++....-++.-. ..+... .++.-|.
T Consensus 148 ----es~ss----------ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL--------Kys~Kd--yflkAgL 203 (288)
T KOG1586|consen 148 ----ESVSS----------ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL--------KYSAKD--YFLKAGL 203 (288)
T ss_pred ----hhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH--------HhHHHH--HHHHHHH
Confidence 11111 11234455677778899999999999987765444211 111111 3445688
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 002199 676 SYFCIGKLEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 676 ~y~~lG~~eeAl~~l~kal~l~p~~~~ 702 (954)
+++...+.-.+...+++...++|....
T Consensus 204 Chl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 204 CHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 888889998899999999999997765
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0071 Score=71.54 Aligned_cols=170 Identities=16% Similarity=0.082 Sum_probs=119.0
Q ss_pred HHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhCC
Q 002199 623 ADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYF----CIGKLEVALDLLQKLEQVGS 698 (954)
Q Consensus 623 A~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~----~lG~~eeAl~~l~kal~l~p 698 (954)
-.+.--.|+-+.++..+.++.+...-... -..+..+ .|+..-..+. .....+.|.+.+...++..|
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~---------la~L~LL-~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP 264 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSENIRSP---------LAALVLL-WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYP 264 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccCCcchH---------HHHHHHH-HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCC
Confidence 34444568999999999988663211100 0111222 2222222222 24567888899999888888
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHH
Q 002199 699 ISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADA 778 (954)
Q Consensus 699 ~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeA 778 (954)
+.. .-+...|.++...|+.++|++.|++++.....-+.....+++.+|.++..+.+|++|
T Consensus 265 ~s~--------------------lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 265 NSA--------------------LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CcH--------------------HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 653 245568999999999999999999998654444466788999999999999999999
Q ss_pred HHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHH
Q 002199 779 IADCSLAMALDENY-TKAVSRRAALHEMIRDY-------TQAASDLQRLVSI 822 (954)
Q Consensus 779 i~~~ekAL~ldP~~-~~al~~lA~ly~~lg~~-------eeAi~~~ekAL~l 822 (954)
..++.+.++.+... .-..|..|.++..+++. ++|...|.++-.+
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999999876653 33456668999999999 5555555555544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00064 Score=67.98 Aligned_cols=152 Identities=15% Similarity=0.070 Sum_probs=118.5
Q ss_pred CHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHH
Q 002199 631 KYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILES 710 (954)
Q Consensus 631 ~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~ 710 (954)
+.+.+..-..+.+.+.|... ..+.||..+..+|++.+|..+|++++.---.++
T Consensus 71 dP~R~~Rea~~~~~~ApTvq------------------nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d--------- 123 (251)
T COG4700 71 DPERHLREATEELAIAPTVQ------------------NRYRLANALAELGRYHEAVPHYQQALSGIFAHD--------- 123 (251)
T ss_pred ChhHHHHHHHHHHhhchhHH------------------HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC---------
Confidence 44444455555555666442 356789999999999999999999986321111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 002199 711 SMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDE 790 (954)
Q Consensus 711 ~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP 790 (954)
...+..+++..+..+++..|...+++..+.+|... .+.....+|.+|..+|++.+|...|+.++...|
T Consensus 124 ----------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r--~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 124 ----------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR--SPDGHLLFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred ----------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC--CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 22455688999999999999999999999886533 445556678899999999999999999999988
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 791 NYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 791 ~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
. +.+....+..+..+|+..+|...|..+.+-
T Consensus 192 g-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 192 G-PQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred C-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 5 778888999999999999999887766654
|
|
| >PRK09430 djlA Dna-J like membrane chaperone protein; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.7e-05 Score=84.63 Aligned_cols=39 Identities=46% Similarity=0.655 Sum_probs=35.4
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY 902 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~ 902 (954)
...++|++|||.++++..+||++||+++++||||+....
T Consensus 198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~ 236 (267)
T PRK09430 198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAK 236 (267)
T ss_pred cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCC
Confidence 356899999999999999999999999999999997543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.3e-05 Score=74.76 Aligned_cols=88 Identities=17% Similarity=0.215 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCcHHHHHHHH
Q 002199 464 LTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGR----------MREALEDCMMAATVDPNFLKVYMRAA 533 (954)
Q Consensus 464 y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~----------~eeAl~~~~kALel~P~~~~a~~~LA 533 (954)
|+.|.+.++.....+|.+. ..+++.|.+++.+.+ +++|+.-|+.||.++|+...+++.+|
T Consensus 7 FE~ark~aea~y~~nP~Da----------dnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lG 76 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDA----------DNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLG 76 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H----------HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhH----------HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 6789999999999999997 889999988887744 57889999999999999999999999
Q ss_pred HHHHHcCC-----------HHHHHHHHHHHHhhchhhhh
Q 002199 534 KCHLVLGE-----------IENAQHYYHKLLNSAAAVCL 561 (954)
Q Consensus 534 ~iy~~lG~-----------~eeAl~~yekaL~l~P~~~~ 561 (954)
.+|..++. |++|..+|++|...+|.+..
T Consensus 77 nA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 77 NAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 99998764 78899999999999998743
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PRK01356 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.7e-06 Score=81.96 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=51.3
Q ss_pred cchhhhhccccC--CCHHHHHHHHHHHHHhhCCCCCCChhH-------HHHHHHHHHHCCCCCcccccccc
Q 002199 866 LDFYLILGVKAS--DTAADIKKAYRKAALKHHPDKRSEYDQ-------EQEIRKATKESPQNSHYGRSSDA 927 (954)
Q Consensus 866 ~dyYkiLgv~~~--a~~~eIkkAYrklAl~~HPDK~~~~~~-------~e~~~~~~~~l~~~~~~r~~yD~ 927 (954)
.+||++||+++. ++..+|+++||+++++||||+...... ...++++|++|++ |..|+.|+-
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~d-p~~Ra~YlL 71 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKD-ALKRAEYML 71 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHH
Confidence 479999999987 678999999999999999999864322 2478899999986 889999963
|
|
| >KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.1e-06 Score=84.41 Aligned_cols=66 Identities=24% Similarity=0.326 Sum_probs=53.5
Q ss_pred CCCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChhHHHHH---HHHHHHCCCCCcccccccccC
Q 002199 863 GEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEI---RKATKESPQNSHYGRSSDAYG 929 (954)
Q Consensus 863 ~~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~~e~~---~~~~~~l~~~~~~r~~yD~~g 929 (954)
....|.|.+|||.++++..+|+||||+||++||||+++.+...+.+ +.+++.+-+ .+.|..||-+-
T Consensus 30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd-~e~rt~ydyal 98 (329)
T KOG0722|consen 30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKD-NETRTQYDYAL 98 (329)
T ss_pred ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccc-hhhHHhHHHHh
Confidence 4467899999999999999999999999999999999887655544 455666654 67788888543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.1e-05 Score=74.46 Aligned_cols=89 Identities=22% Similarity=0.213 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhc----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 002199 737 YTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALG----------QIADAIADCSLAMALDENYTKAVSRRAALHEMI 806 (954)
Q Consensus 737 ~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg----------~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~l 806 (954)
|+.|.+.++.....+ |.++..+++-|.+++.+. .+++|+.-|++||.++|+...+++.+|.+|..+
T Consensus 7 FE~ark~aea~y~~n----P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN----PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 678999999999999 888899999998888763 467889999999999999999999999999877
Q ss_pred cC-----------HHHHHHHHHHHHHHhhhhHHH
Q 002199 807 RD-----------YTQAASDLQRLVSILENQSAE 829 (954)
Q Consensus 807 g~-----------~eeAi~~~ekAL~l~p~~~~~ 829 (954)
+. |++|..+|++|+.+.|++..+
T Consensus 83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 53 677777777777776665544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0008 Score=67.29 Aligned_cols=129 Identities=18% Similarity=0.095 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 494 CYSNRAATRISLGRMREALEDCMMAAT-VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 494 ~~~~lA~~y~~lg~~eeAl~~~~kALe-l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
-.+.+|..+..+|++.+|...|++++. +.-+++..++.++++.+..+++..|...+++..+.+|.-
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~------------- 157 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF------------- 157 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc-------------
Confidence 444555555555555555555555543 334444555555555555555555555555554444321
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~ 652 (954)
..+.-...+|.+|..+|++.+|...|+.++...|.-.
T Consensus 158 -----------------------------------------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-- 194 (251)
T COG4700 158 -----------------------------------------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ-- 194 (251)
T ss_pred -----------------------------------------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH--
Confidence 2345566678888888888888888888888777542
Q ss_pred hhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 653 VLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLE 694 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal 694 (954)
+....+..+..+|+..+|...+....
T Consensus 195 ----------------ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 195 ----------------ARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred ----------------HHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 22345667777887777776665543
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.4e-05 Score=86.63 Aligned_cols=95 Identities=27% Similarity=0.449 Sum_probs=89.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002199 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHE 804 (954)
Q Consensus 725 ~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~ 804 (954)
...+...+..|.++.||+.|..+|.++ |..+.+|..++.+++++++...||++|..|++++|+....|-.++.+..
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~ln----p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELN----PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER 193 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccC----CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence 345667788999999999999999999 8899999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHHHh
Q 002199 805 MIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 805 ~lg~~eeAi~~~ekAL~l~ 823 (954)
.+|+|++|..+|..+.+++
T Consensus 194 llg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLD 212 (377)
T ss_pred HhhchHHHHHHHHHHHhcc
Confidence 9999999999999999984
|
|
| >PRK05014 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.5e-05 Score=80.81 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=50.3
Q ss_pred chhhhhccccC--CCHHHHHHHHHHHHHhhCCCCCCChh---------HHHHHHHHHHHCCCCCcccccccc
Q 002199 867 DFYLILGVKAS--DTAADIKKAYRKAALKHHPDKRSEYD---------QEQEIRKATKESPQNSHYGRSSDA 927 (954)
Q Consensus 867 dyYkiLgv~~~--a~~~eIkkAYrklAl~~HPDK~~~~~---------~~e~~~~~~~~l~~~~~~r~~yD~ 927 (954)
+||.+|||++. ++..+|+++||+++++||||+..... ....++++|++|.+ |..|+.|+.
T Consensus 2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~d-p~~Ra~Yll 72 (171)
T PRK05014 2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKH-PLKRAEYLL 72 (171)
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCC-hhHHHHHHH
Confidence 79999999986 67789999999999999999965432 22458899999986 889999974
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.093 Score=59.80 Aligned_cols=181 Identities=7% Similarity=-0.044 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002199 618 LLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVG 697 (954)
Q Consensus 618 ~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~ 697 (954)
.+..++.|-+-.|++.+|++....+.+......... +..... ...++.+|......+.++.|...|..|.++.
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~-----Llr~~~--~~ih~LlGlys~sv~~~enAe~hf~~a~k~t 397 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPL-----LLRAHE--AQIHMLLGLYSHSVNCYENAEFHFIEATKLT 397 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchH-----HHHHhH--HHHHHHHhhHhhhcchHHHHHHHHHHHHHhh
Confidence 455667788889999999998888776654332100 000111 1256778888888999999999999998753
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC------chhhHHHHHHHHHHHHH
Q 002199 698 SISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES------RPFAAICFCNRAAALQA 771 (954)
Q Consensus 698 p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~------~p~~a~~~~~lA~~y~~ 771 (954)
... .-.+..-.++|..|++.++-+.-.+.++. +.|.+ ....+.+++..|...+.
T Consensus 398 ~~~-----------------dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 398 ESI-----------------DLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred hHH-----------------HHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 211 11233445789999998776654333333 33321 13456678888999999
Q ss_pred hcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 772 LGQIADAIADCSLAMALDEN------YTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 772 lg~~eeAi~~~ekAL~ldP~------~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
.+++.||...+.+.|++... ..-.+..++.+..-+|+..++.....-++.+..+
T Consensus 458 qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkK 517 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKK 517 (629)
T ss_pred hccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhc
Confidence 99999999999999987511 1345666788899999999999999998888544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0032 Score=65.63 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 492 VLCYSNRAATRISLGRMREALEDCMMAATVDPNF------LKVYMRAAKCHLVLGEIENAQHYYHKLLN 554 (954)
Q Consensus 492 a~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~------~~a~~~LA~iy~~lG~~eeAl~~yekaL~ 554 (954)
+..|..-+.+|....+|++|..++.+|++-..++ ++++-..|.+...+..+.|+..+|+++..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~ 99 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASE 99 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3566667778888889999998888888544333 33444445555555555566666555544
|
|
| >KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.3e-05 Score=89.45 Aligned_cols=62 Identities=34% Similarity=0.394 Sum_probs=55.4
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChhHHHH---HHHHHHHCCCCCcccccccc
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQE---IRKATKESPQNSHYGRSSDA 927 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~~e~---~~~~~~~l~~~~~~r~~yD~ 927 (954)
..|.|.+|||..++++++|||.|||+|..-||||+..+.++|. +..|++++++ +++|..||.
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~-~~kR~eYd~ 298 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGD-SVKRKEYDL 298 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcc-hhhhhHHHH
Confidence 6889999999999999999999999999999999987766655 4567899986 999999995
|
|
| >KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.78 E-value=2e-05 Score=87.16 Aligned_cols=65 Identities=40% Similarity=0.560 Sum_probs=53.5
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh--hHHHHHH---HHHHHCCCCCcccccccccCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY--DQEQEIR---KATKESPQNSHYGRSSDAYGY 930 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~--~~~e~~~---~~~~~l~~~~~~r~~yD~~g~ 930 (954)
..|||++|+|.+.++..+|++||+++|++|||||+... .+..++. ++++++++ +.+|..||.||.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~-~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSD-PKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCC-HHHhhhccccCc
Confidence 46899999999999999999999999999999997766 2222233 45567775 899999999995
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.043 Score=62.07 Aligned_cols=140 Identities=21% Similarity=0.197 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
.|..++.+....|.++.|...+.++....+...... .......+..+...|+..+|+..++..+
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~----------------~~v~~e~akllw~~g~~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLL----------------PRVFLEYAKLLWAQGEQEEAIQKLRELL 211 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCC----------------cchHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456667777777777777777777666442221100 1122334556666666666666666665
Q ss_pred hhc------------------------------cCCchhhHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHhCCCC
Q 002199 749 STN------------------------------IESRPFAAICFCNRAAALQAL------GQIADAIADCSLAMALDENY 792 (954)
Q Consensus 749 ~l~------------------------------~~~~p~~a~~~~~lA~~y~~l------g~~eeAi~~~ekAL~ldP~~ 792 (954)
... .......+.+++.+|.....+ +..++++..|..++.++|..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 291 (352)
T PF02259_consen 212 KCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW 291 (352)
T ss_pred HHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence 510 011234566777788777777 88999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCH-----------------HHHHHHHHHHHHHhh
Q 002199 793 TKAVSRRAALHEMIRDY-----------------TQAASDLQRLVSILE 824 (954)
Q Consensus 793 ~~al~~lA~ly~~lg~~-----------------eeAi~~~ekAL~l~p 824 (954)
..+|+.+|..+..+=+. ..|+..|-+++.+-+
T Consensus 292 ~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~ 340 (352)
T PF02259_consen 292 EKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGS 340 (352)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999877655222 346666777776643
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0023 Score=66.32 Aligned_cols=138 Identities=17% Similarity=0.089 Sum_probs=99.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhcc
Q 002199 674 SKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS-GRYTEAVEHYTVALSTNI 752 (954)
Q Consensus 674 g~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~-g~~eeAi~~y~kAL~l~~ 752 (954)
+.+| +..+.++|+.++++++++..+-. +....+..+..+|.+|-.. .++++||.+|++|-+...
T Consensus 81 ~~cy-kk~~~~eAv~cL~~aieIyt~~G--------------rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 81 ANCY-KKVDPEEAVNCLEKAIEIYTDMG--------------RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred HHHh-hccChHHHHHHHHHHHHHHHhhh--------------HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence 4444 45589999999999887643221 2223344566788888766 899999999999987643
Q ss_pred C--CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 753 E--SRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYT-------KAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 753 ~--~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~-------~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
. .......++...|..-..+++|.+||..|+++....-++. .-++.-|.|++-..+.-.|...+++..+++
T Consensus 146 ~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 146 GEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 2 1234456777778888889999999999999887654442 233445777888799999999999999997
Q ss_pred hhh
Q 002199 824 ENQ 826 (954)
Q Consensus 824 p~~ 826 (954)
|.-
T Consensus 226 P~F 228 (288)
T KOG1586|consen 226 PAF 228 (288)
T ss_pred Ccc
Confidence 654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.036 Score=68.10 Aligned_cols=327 Identities=11% Similarity=-0.027 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcC--CCc----HHHHHHHHHHH
Q 002199 464 LTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRI-SLGRMREALEDCMMAATVD--PNF----LKVYMRAAKCH 536 (954)
Q Consensus 464 y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~-~lg~~eeAl~~~~kALel~--P~~----~~a~~~LA~iy 536 (954)
...||.+++.+++ .+.-+ ....+.+++.+|.+++ ...++++|..++++++.+. ++. ..+.+.++.+|
T Consensus 37 I~~ai~CL~~~~~-~~~l~-----p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~ 110 (608)
T PF10345_consen 37 IATAIKCLEAVLK-QFKLS-----PRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIY 110 (608)
T ss_pred HHHHHHHHHHHhc-cCCCC-----HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 4567888888885 22211 2345789999999988 7899999999999998876 333 34566779999
Q ss_pred HHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHhcChHHHHHHHHHHHHHHhcC--
Q 002199 537 LVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINC--SGKLLEQKTSEAASSALERINEALSIS-- 612 (954)
Q Consensus 537 ~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~--a~~ll~~g~~~~a~eAL~~l~kaL~~~-- 612 (954)
.+.+... |+..++++++........ .+...+.. +...+..+++. .|++.++......
T Consensus 111 ~~~~~~~-a~~~l~~~I~~~~~~~~~---------------~w~~~frll~~~l~~~~~d~~---~Al~~L~~~~~~a~~ 171 (608)
T PF10345_consen 111 FKTNPKA-ALKNLDKAIEDSETYGHS---------------AWYYAFRLLKIQLALQHKDYN---AALENLQSIAQLANQ 171 (608)
T ss_pred HhcCHHH-HHHHHHHHHHHHhccCch---------------hHHHHHHHHHHHHHHhcccHH---HHHHHHHHHHHHhhh
Confidence 9998888 999999988854321000 01111111 11222225666 5666665555543
Q ss_pred CCCHH----HHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 002199 613 SCSEK----LLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALD 688 (954)
Q Consensus 613 P~~~~----~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~ 688 (954)
..++. +....+.++...+..+++++.+++++...... . .+... ..+...+|....--.+++..|++..+..
T Consensus 172 ~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~-q---~~~~~-~~~qL~~~~lll~l~~~l~~~~~~~~~~ 246 (608)
T PF10345_consen 172 RGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL-Q---LDPSV-HIPQLKALFLLLDLCCSLQQGDVKNSKQ 246 (608)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc-c---cCCCC-CcHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 23333 33344667777788888999888886544321 0 00000 1222233333333446678888777766
Q ss_pred HHHHHHh---hCCCCc-------chhhHH-H----------HHHHHHH-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002199 689 LLQKLEQ---VGSISD-------RYGSEI-L----------ESSMSLA-GTVRALLHHKSAGNEAFKSGRYTEAVEHYTV 746 (954)
Q Consensus 689 ~l~kal~---l~p~~~-------~~~~~~-l----------~~~~~l~-~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~k 746 (954)
.+++.-. ...... .....+ + .....+. ...-.+..+.--|......+..+.|.+++.+
T Consensus 247 ~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k 326 (608)
T PF10345_consen 247 KLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEK 326 (608)
T ss_pred HHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHH
Confidence 6655432 221111 000000 0 0001111 1112234445557777788888888888888
Q ss_pred HHhhccC-------Cc---------------hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---C------CCHHH
Q 002199 747 ALSTNIE-------SR---------------PFAAICFCNRAAALQALGQIADAIADCSLAMALD---E------NYTKA 795 (954)
Q Consensus 747 AL~l~~~-------~~---------------p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld---P------~~~~a 795 (954)
+++.-.. .. .....+++.++.+..-++++..|....+.+.... | -.+..
T Consensus 327 ~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 406 (608)
T PF10345_consen 327 ALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLL 406 (608)
T ss_pred HHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHH
Confidence 8765211 00 1123455667778888999999999998877553 2 24778
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Q 002199 796 VSRRAALHEMIRDYTQAASDLQRLV 820 (954)
Q Consensus 796 l~~lA~ly~~lg~~eeAi~~~ekAL 820 (954)
++..|..+...|+.+.|..+|.+.+
T Consensus 407 ~yL~gl~~q~~g~l~~A~~~y~~~~ 431 (608)
T PF10345_consen 407 HYLLGLYYQSTGDLEAALYQYQKPR 431 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhhhH
Confidence 8999999999999999999998544
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.023 Score=66.78 Aligned_cols=81 Identities=14% Similarity=0.148 Sum_probs=47.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH------------Hh-----
Q 002199 458 AYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMA------------AT----- 520 (954)
Q Consensus 458 ~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kA------------Le----- 520 (954)
....|+|+.|...++ .+...|+.. ..|..++...+..|+.--|..+|... ++
T Consensus 454 aid~~df~ra~afle-s~~~~~da~----------amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadea 522 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLE-SLEMGPDAE----------AMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEA 522 (1636)
T ss_pred ccccCchHHHHHHHH-hhccCccHH----------HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999987654 567777765 67777777666666655444444211 22
Q ss_pred ---cCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 521 ---VDPNFLKVYMRAAKCHLVLGEIENAQHYY 549 (954)
Q Consensus 521 ---l~P~~~~a~~~LA~iy~~lG~~eeAl~~y 549 (954)
+.-+-...|.-+|.+.+.-.+|.+|...|
T Consensus 523 s~~~ggdgt~fykvra~lail~kkfk~ae~if 554 (1636)
T KOG3616|consen 523 SIEIGGDGTDFYKVRAMLAILEKKFKEAEMIF 554 (1636)
T ss_pred hHhhCCCCchHHHHHHHHHHHHhhhhHHHHHH
Confidence 22222344555555555556666666555
|
|
| >PRK03578 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.3e-05 Score=77.65 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=53.0
Q ss_pred CcchhhhhccccC--CCHHHHHHHHHHHHHhhCCCCCCChh-H--------HHHHHHHHHHCCCCCcccccccc--cCC
Q 002199 865 PLDFYLILGVKAS--DTAADIKKAYRKAALKHHPDKRSEYD-Q--------EQEIRKATKESPQNSHYGRSSDA--YGY 930 (954)
Q Consensus 865 ~~dyYkiLgv~~~--a~~~eIkkAYrklAl~~HPDK~~~~~-~--------~e~~~~~~~~l~~~~~~r~~yD~--~g~ 930 (954)
..+||.+|||++. .+..+|+++||+++.+||||+..... . ...++++|.+|.+ |..|+.|+. .|.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~-p~~Ra~Yll~l~G~ 82 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRD-PLKRARYLLHLRGV 82 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC-hhhHHHHHHHhcCC
Confidence 4789999999985 57889999999999999999975321 1 2578899999986 889999983 453
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0038 Score=71.42 Aligned_cols=202 Identities=13% Similarity=0.062 Sum_probs=134.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccC------cc--hhhHHHHHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNG------SV--TYSLARLWRWR 671 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~------~~--~~~~~~l~a~~ 671 (954)
.-++...+||+++|+.+.+|..||+-. ..-..+|..+|+++++.............. .. ...-..+++..
T Consensus 186 aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~Kr 263 (539)
T PF04184_consen 186 ARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKR 263 (539)
T ss_pred HHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHH
Confidence 567778899999999999998887632 234578888888888776654332110000 00 01111234567
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 672 LISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 672 ~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~ 751 (954)
.+|.+..++|+.++|++.++..++..|.... +..+.++-..++..+.|.++...+.+-=.+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~------------------l~IrenLie~LLelq~Yad~q~lL~kYdDi- 324 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDN------------------LNIRENLIEALLELQAYADVQALLAKYDDI- 324 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccch------------------hhHHHHHHHHHHhcCCHHHHHHHHHHhccc-
Confidence 7899999999999999999999988774332 234556788889999999998888775322
Q ss_pred cCCchhhHHHHHHHHHHHHH-hcC---------------HHHHHHHHHHHHHhCCCCHHHHHHHH------HHHHHhcCH
Q 002199 752 IESRPFAAICFCNRAAALQA-LGQ---------------IADAIADCSLAMALDENYTKAVSRRA------ALHEMIRDY 809 (954)
Q Consensus 752 ~~~~p~~a~~~~~lA~~y~~-lg~---------------~eeAi~~~ekAL~ldP~~~~al~~lA------~ly~~lg~~ 809 (954)
.-|..+.+.+..|.+..+ .++ -..|++.+.+|++.+|..++.++.+= .-+.+.|+
T Consensus 325 --~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD- 401 (539)
T PF04184_consen 325 --SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD- 401 (539)
T ss_pred --cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-
Confidence 125566666666654433 222 23467889999999998887555432 23455565
Q ss_pred HHHHHHHHHHHHHhhh
Q 002199 810 TQAASDLQRLVSILEN 825 (954)
Q Consensus 810 eeAi~~~ekAL~l~p~ 825 (954)
.||+.+---.+..+.+
T Consensus 402 SEAiaYAf~hL~hWk~ 417 (539)
T PF04184_consen 402 SEAIAYAFFHLQHWKR 417 (539)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888887766666543
|
The molecular function of this protein is uncertain. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.058 Score=61.05 Aligned_cols=163 Identities=12% Similarity=0.032 Sum_probs=110.8
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002199 612 SSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQ 691 (954)
Q Consensus 612 ~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~ 691 (954)
.......+...+.+....|.++.|...+.++....+...... ....+..+.+++..|+..+|+..++
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~-------------~~v~~e~akllw~~g~~~~Ai~~L~ 208 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLL-------------PRVFLEYAKLLWAQGEQEEAIQKLR 208 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCC-------------cchHHHHHHHHHHcCCHHHHHHHHH
Confidence 345567889999999999999999999999888663221100 0034556889999999999999999
Q ss_pred HHHhhCCCCc-c-hhhHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhc
Q 002199 692 KLEQVGSISD-R-YGSEILES------------SMSLAGTVRALLHHKSAGNEAFKS------GRYTEAVEHYTVALSTN 751 (954)
Q Consensus 692 kal~l~p~~~-~-~~~~~l~~------------~~~l~~~~~~~~~~~~lG~~~~~~------g~~eeAi~~y~kAL~l~ 751 (954)
..+....... . .....+.. ..........+..+..+|...... +.+++++..|.+++.++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~ 288 (352)
T PF02259_consen 209 ELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD 288 (352)
T ss_pred HHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC
Confidence 8887221111 0 00000100 001222233445666778777777 99999999999999998
Q ss_pred cCCchhhHHHHHHHHHHHHHhcC-----------------HHHHHHHHHHHHHhCCC
Q 002199 752 IESRPFAAICFCNRAAALQALGQ-----------------IADAIADCSLAMALDEN 791 (954)
Q Consensus 752 ~~~~p~~a~~~~~lA~~y~~lg~-----------------~eeAi~~~ekAL~ldP~ 791 (954)
|....+|+.+|..+..+=. ...|+..|-+++.+.+.
T Consensus 289 ----~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 289 ----PSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ----hhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 7777888888877765422 23477777888887776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.049 Score=66.42 Aligned_cols=218 Identities=20% Similarity=0.185 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhh
Q 002199 581 EYINCSGKLLEQKTSEAASSALERINEALSISS------CSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVL 654 (954)
Q Consensus 581 ~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P------~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~ 654 (954)
-.+..+.......++.++...|..+...+.... ......-..|.+....|++++|+.+.+.++..-|.+..
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~--- 493 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY--- 493 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc---
Confidence 345567777778899988888888877766421 12456667789999999999999999999998876632
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002199 655 ADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS 734 (954)
Q Consensus 655 ~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~ 734 (954)
..++..+..+|.+..-.|++++|+.+.+.+.++....... .-.+......+.++..+
T Consensus 494 ---------~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~--------------~l~~~~~~~~s~il~~q 550 (894)
T COG2909 494 ---------RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVY--------------HLALWSLLQQSEILEAQ 550 (894)
T ss_pred ---------hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccH--------------HHHHHHHHHHHHHHHHh
Confidence 2333466778999999999999999999998764433332 22234445567777777
Q ss_pred CC--HHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCC--HH-HHHHHHHHHHH
Q 002199 735 GR--YTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALD----ENY--TK-AVSRRAALHEM 805 (954)
Q Consensus 735 g~--~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld----P~~--~~-al~~lA~ly~~ 805 (954)
|+ +.+....|...-.......+........++.++...-+++.+.......+++- |.. .. +++.++.+++.
T Consensus 551 Gq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~ 630 (894)
T COG2909 551 GQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFL 630 (894)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHh
Confidence 73 33333444433322222224555556666666666656888887777777653 222 22 33578999999
Q ss_pred hcCHHHHHHHHHHHHHHhh
Q 002199 806 IRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 806 lg~~eeAi~~~ekAL~l~p 824 (954)
.|++++|...+.....+.-
T Consensus 631 ~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 631 RGDLDKALAQLDELERLLL 649 (894)
T ss_pred cCCHHHHHHHHHHHHHHhc
Confidence 9999999999988887743
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.13 Score=62.97 Aligned_cols=266 Identities=17% Similarity=0.067 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
...+......+.....+.+|.+|..+..++...-+.-. .......++...-.+|.+....|+.+.|+...+.++..-|.
T Consensus 412 ~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~-~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~ 490 (894)
T COG2909 412 ASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPM-HSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE 490 (894)
T ss_pred hhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCc-ccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc
Confidence 34455667788888999999999999999887665521 11223446777888899999999999999999999998775
Q ss_pred c-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC--hHH
Q 002199 525 F-----LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKT--SEA 597 (954)
Q Consensus 525 ~-----~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~--~~~ 597 (954)
. ..++..+|.+..-.|++.+|+.+...+.++..... .. ...+...+..+..+..+|+ +.+
T Consensus 491 ~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~------~~-------~l~~~~~~~~s~il~~qGq~~~a~ 557 (894)
T COG2909 491 AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD------VY-------HLALWSLLQQSEILEAQGQVARAE 557 (894)
T ss_pred ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc------cH-------HHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4 45777889999999999999999999877532210 01 1113334444555555662 222
Q ss_pred HHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHH
Q 002199 598 ASSALERI-NEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKS 676 (954)
Q Consensus 598 a~eAL~~l-~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~ 676 (954)
.+.+.... .+-+...|-.......++.++..--+++.+.......+........ .+...-..++.++.+
T Consensus 558 ~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~----------~~~~~~~~~~~LA~l 627 (894)
T COG2909 558 QEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTP----------QPLLSRLALSMLAEL 627 (894)
T ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhccc----------chhHHHHHHHHHHHH
Confidence 22222222 2223334544444455555555444477777666666655432211 111111234689999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 677 YFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVA 747 (954)
Q Consensus 677 y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kA 747 (954)
++..|++++|...+.....+...... ..... +.++.-.......+|++..|.....+.
T Consensus 628 ~~~~Gdl~~A~~~l~~~~~l~~~~~~-~~~~~------------a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 628 EFLRGDLDKALAQLDELERLLLNGQY-HVDYL------------AAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCC-CchHH------------HHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 99999999999999998776544421 11100 111122233445678888888887774
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0031 Score=62.19 Aligned_cols=101 Identities=20% Similarity=0.075 Sum_probs=79.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCc------------------hhhHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESR------------------PFAAICFCNRAAALQALGQIADAIADCSLA 785 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~------------------p~~a~~~~~lA~~y~~lg~~eeAi~~~ekA 785 (954)
+...|......++...++..+.+++.+....- .....++..++.++...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 33456667788899999999999998742110 223445667788888999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 786 MALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 786 L~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
+.++|-+..++..+-.+|..+|++.+|+..|+++...+.
T Consensus 89 l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 89 LALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.019 Score=69.52 Aligned_cols=282 Identities=14% Similarity=0.013 Sum_probs=188.4
Q ss_pred CHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhc-----CCCcHHHHHHH
Q 002199 463 NLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISL-----GRMREALEDCMMAATV-----DPNFLKVYMRA 532 (954)
Q Consensus 463 ~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~l-----g~~eeAl~~~~kALel-----~P~~~~a~~~L 532 (954)
....|..+|+.+-...- +.+...+|.||+.- .+.+.|+.+|+.+.+- .-.++.+.+.+
T Consensus 227 ~~~~a~~~~~~~a~~g~------------~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~l 294 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGH------------SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGL 294 (552)
T ss_pred hhhHHHHHHHHHHhhcc------------hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHH
Confidence 45678888887776533 26788888888865 6899999999999771 11255688999
Q ss_pred HHHHHHcC-----CHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 002199 533 AKCHLVLG-----EIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINE 607 (954)
Q Consensus 533 A~iy~~lG-----~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~k 607 (954)
|.+|.... ++..|+.+|.++-.+... ...+.++..+.......+...|..+|..
T Consensus 295 g~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~---------------------~a~~~lg~~~~~g~~~~d~~~A~~yy~~ 353 (552)
T KOG1550|consen 295 GRLYLQGLGVEKIDYEKALKLYTKAAELGNP---------------------DAQYLLGVLYETGTKERDYRRAFEYYSL 353 (552)
T ss_pred HHHHhcCCCCccccHHHHHHHHHHHHhcCCc---------------------hHHHHHHHHHHcCCccccHHHHHHHHHH
Confidence 99999854 678899999999887543 2344445444433312333489999988
Q ss_pred HHhcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc-CC
Q 002199 608 ALSISSCSEKLLEMKADALYML----RKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI-GK 682 (954)
Q Consensus 608 aL~~~P~~~~~~~~lA~~~~~l----g~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l-G~ 682 (954)
|... .+..+.+.+|.||..- .+...|..++.++.+..+-. +.+.++..+... +.
T Consensus 354 Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~-------------------A~~~~~~~~~~g~~~ 412 (552)
T KOG1550|consen 354 AAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPS-------------------AAYLLGAFYEYGVGR 412 (552)
T ss_pred HHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChh-------------------hHHHHHHHHHHcccc
Confidence 8764 4677888888888763 58899999999998887322 234444444322 77
Q ss_pred HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---cCCHHHHHHHHHHHHhhccCCchhh
Q 002199 683 LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAF-K---SGRYTEAVEHYTVALSTNIESRPFA 758 (954)
Q Consensus 683 ~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~-~---~g~~eeAi~~y~kAL~l~~~~~p~~ 758 (954)
+..+...+.....+.-...... +..+........ . ..+...+...|.++... .+
T Consensus 413 ~~~~~~~~~~~a~~g~~~~q~~----------------a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~------g~ 470 (552)
T KOG1550|consen 413 YDTALALYLYLAELGYEVAQSN----------------AAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ------GN 470 (552)
T ss_pred ccHHHHHHHHHHHhhhhHHhhH----------------HHHHHHhccccccccccccchhHHHHHHHHHHhc------cC
Confidence 7777666665544321111100 000000110111 1 23566777777777553 46
Q ss_pred HHHHHHHHHHHHHh----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHh
Q 002199 759 AICFCNRAAALQAL----GQIADAIADCSLAMALDENYTKAVSRRAALHEMI---RDYTQAASDLQRLVSIL 823 (954)
Q Consensus 759 a~~~~~lA~~y~~l----g~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~l---g~~eeAi~~~ekAL~l~ 823 (954)
..+...+|.+|..- .+++.|...|.+|.... ..+.+++|.++..- ..+..|..+|.++.+..
T Consensus 471 ~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 471 ADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred HHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 77888888888765 36999999999998776 99999999999743 22788999998887764
|
|
| >PRK00294 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0001 Score=74.53 Aligned_cols=62 Identities=13% Similarity=0.169 Sum_probs=51.9
Q ss_pred CcchhhhhccccC--CCHHHHHHHHHHHHHhhCCCCCCChh---------HHHHHHHHHHHCCCCCcccccccc
Q 002199 865 PLDFYLILGVKAS--DTAADIKKAYRKAALKHHPDKRSEYD---------QEQEIRKATKESPQNSHYGRSSDA 927 (954)
Q Consensus 865 ~~dyYkiLgv~~~--a~~~eIkkAYrklAl~~HPDK~~~~~---------~~e~~~~~~~~l~~~~~~r~~yD~ 927 (954)
..+||.+||+++. .+..+|+++||+++.++|||+..... ....++++|.+|.+ |..|+.|+.
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~-p~~Ra~YlL 75 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKS-PPRRARYLL 75 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCC-hhhhHHHHH
Confidence 4689999999988 55799999999999999999975432 23578899999986 888999984
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.041 Score=64.79 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH------HHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQ------GINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMA----- 518 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~k------AL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kA----- 518 (954)
.|-..|..|-+..++++|+++|.+ ||++..-. .....+.+--..|.-+...|+++.|+..|-.|
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfa-----fp~evv~lee~wg~hl~~~~q~daainhfiea~~~~k 737 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFA-----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIK 737 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhh-----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHH
Confidence 344455666677788888888764 45442111 01122344455677778888888888776443
Q ss_pred -HhcC-------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 519 -ATVD-------------------PNFLKVYMRAAKCHLVLGEIENAQHYYHKL 552 (954)
Q Consensus 519 -Lel~-------------------P~~~~a~~~LA~iy~~lG~~eeAl~~yeka 552 (954)
++.. ..-...|-.+|.-|...|+|+-|.+.|.++
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 2110 011223344566666677777777666554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0054 Score=64.01 Aligned_cols=181 Identities=18% Similarity=0.088 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 616 EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQ 695 (954)
Q Consensus 616 ~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~ 695 (954)
...|..-+.+|....+|++|...+.++++-..++...... .-++-..+.+...+..+.++..+|+++..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA-----------AKayEqaamLake~~klsEvvdl~eKAs~ 99 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA-----------AKAYEQAAMLAKELSKLSEVVDLYEKASE 99 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH-----------HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3455566778888889999998888888766555321111 11455566677778888888888888876
Q ss_pred hCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCc--hhhHHHHHHHHHHHHHhc
Q 002199 696 VGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESR--PFAAICFCNRAAALQALG 773 (954)
Q Consensus 696 l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~--p~~a~~~~~lA~~y~~lg 773 (954)
+.-.+.. ...+......+--.....+.++|+++|++++.+-.... ......+...+.++.++.
T Consensus 100 lY~E~Gs---------------pdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 100 LYVECGS---------------PDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHHhCC---------------cchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 5322221 11112222344455677899999999999998743222 334556777888999999
Q ss_pred CHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 774 QIADAIADCSLAMAL------DENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 774 ~~eeAi~~~ekAL~l------dP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
+|.+|-..+.+-..+ .|+...++.....+|+...+|.+|..+|+..-++
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 999998887764322 3555666777777888888999999999887666
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00031 Score=54.29 Aligned_cols=43 Identities=30% Similarity=0.220 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002199 760 ICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAAL 802 (954)
Q Consensus 760 ~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~l 802 (954)
.++..+|.+|..+|++++|++.|+++++.+|+++.++..+|.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 5678899999999999999999999999999999999888753
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.47 Score=55.09 Aligned_cols=67 Identities=10% Similarity=0.083 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT 520 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe 520 (954)
+.|-+.++|..+-..+-.+ -+++..+.|++.+..-|..+ .+|.......+...+|+.-...|.++|.
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~----------r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSP----------RAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCc----------HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4567788898887765555 99999999999999999998 8888888889999999999999988875
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00055 Score=77.69 Aligned_cols=108 Identities=25% Similarity=0.276 Sum_probs=98.4
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHc---CCHHHHHHHHHHH
Q 002199 442 AAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISL---GRMREALEDCMMA 518 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~l---g~~eeAl~~~~kA 518 (954)
.+.|+.++.++..|+-.+..+....||..|.++++..|... .+|.++|.++++. |+.-.|+.++..|
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~----------~~l~nraa~lmkRkW~~d~~~AlrDch~A 437 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAI----------YLLENRAAALMKRKWRGDSYLALRDCHVA 437 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchh----------HHHHhHHHHHHhhhccccHHHHHHhHHhh
Confidence 35578888999999999999999999999999999999986 8999999999986 4667899999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 519 ATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 519 Lel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
++++|...++|++|+.++..++++.+|+.+...+....|.+
T Consensus 438 lrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 438 LRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred ccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 99999999999999999999999999999998888888844
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0055 Score=60.35 Aligned_cols=109 Identities=16% Similarity=0.125 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccc----cCCch--------HHHHHHHHHHHHHHcCCHHHHHHH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAG----CCIKP--------LVLCYSNRAATRISLGRMREALED 514 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~----~~~~~--------la~~~~~lA~~y~~lg~~eeAl~~ 514 (954)
.-+.+...|......++...++..+.+++.+.....-.+ .|... ...++..++..+...|++++|+..
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL 84 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 344556667888889999999999999999876543222 12211 366777888889999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 515 CMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 515 ~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
+++++.++|.+-.+|..+-.+|..+|++.+|+..|+++...
T Consensus 85 ~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 85 LQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0068 Score=61.57 Aligned_cols=150 Identities=11% Similarity=0.066 Sum_probs=106.2
Q ss_pred HHHHHHHcCCH---HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 673 ISKSYFCIGKL---EVALDLLQKLEQVGSISDRYGSEILESSMSLA-GTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 673 Lg~~y~~lG~~---eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~-~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
.|.-|+...+. .+|-..|++++.............++....-. ...-.......++..+...+++++|+..++.++
T Consensus 37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l 116 (207)
T COG2976 37 FGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL 116 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 45556655444 47888888877654322222233333333333 333445566778999999999999999999998
Q ss_pred hhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 749 STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY-TKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 749 ~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~-~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
... .+......+-.+||.+...+|.+++|+..+..... +.. ...-..+|.++...|+.++|+..|+++++.++.
T Consensus 117 ~~t-~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 117 AQT-KDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred ccc-hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 663 22345677888999999999999999998876432 222 333466799999999999999999999998643
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0004 Score=53.67 Aligned_cols=43 Identities=21% Similarity=0.130 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKC 535 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~i 535 (954)
.++..+|.+|..+|++++|+..|+++++.+|+++.++..+|.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 5789999999999999999999999999999999999998863
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00023 Score=51.85 Aligned_cols=34 Identities=26% Similarity=0.219 Sum_probs=29.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 002199 781 DCSLAMALDENYTKAVSRRAALHEMIRDYTQAAS 814 (954)
Q Consensus 781 ~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~ 814 (954)
+|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3788899999999999999999999999988863
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0075 Score=69.50 Aligned_cols=98 Identities=15% Similarity=0.048 Sum_probs=86.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 002199 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIR 807 (954)
Q Consensus 728 G~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg 807 (954)
|..+...|+...|+.++..|+...| ......+.+||.++++-+..-+|-..+.++|.+.-..+-.++.+|.+|+.+.
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p---~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~ 690 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAP---LQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK 690 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccCh---hhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh
Confidence 4445667999999999999998874 2344567899999999999999999999999999888999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhhHH
Q 002199 808 DYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 808 ~~eeAi~~~ekAL~l~p~~~~ 828 (954)
+.+.|++.|++|+++.|+..+
T Consensus 691 ~i~~a~~~~~~a~~~~~~~~~ 711 (886)
T KOG4507|consen 691 NISGALEAFRQALKLTTKCPE 711 (886)
T ss_pred hhHHHHHHHHHHHhcCCCChh
Confidence 999999999999999776654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.39 Score=55.75 Aligned_cols=73 Identities=12% Similarity=0.125 Sum_probs=65.8
Q ss_pred HHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002199 472 TQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHK 551 (954)
Q Consensus 472 ~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yek 551 (954)
++-|+.+|.+- ..|+.+-.-+..+ -++++.+.|++.+...|..+.+|.......+...+|+.-...|.+
T Consensus 10 ~~rie~nP~di----------~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~R 78 (656)
T KOG1914|consen 10 RERIEENPYDI----------DSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSR 78 (656)
T ss_pred HHHHhcCCccH----------HHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 67788899986 8888887777666 999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 002199 552 LLNS 555 (954)
Q Consensus 552 aL~l 555 (954)
+|..
T Consensus 79 CLvk 82 (656)
T KOG1914|consen 79 CLVK 82 (656)
T ss_pred HHHH
Confidence 9873
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.089 Score=63.76 Aligned_cols=268 Identities=12% Similarity=-0.037 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHH-------hCCCCcccccCCchHHHHHHHHHHHHHHcC-----C
Q 002199 445 QETCEMWRLRGNQAYKN-----NNLTEAEDFYTQGIN-------SVPLSETAGCCIKPLVLCYSNRAATRISLG-----R 507 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~-----g~y~eAi~~y~kAL~-------~~P~~~~~~~~~~~la~~~~~lA~~y~~lg-----~ 507 (954)
.....+...+|.+++.- .+.+.|+.+|..+.. .. .+ .+.+.+|.+|+.-. +
T Consensus 241 ~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~----------~a~~~lg~~Y~~g~~~~~~d 308 (552)
T KOG1550|consen 241 LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LP----------PAQYGLGRLYLQGLGVEKID 308 (552)
T ss_pred hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CC----------ccccHHHHHHhcCCCCcccc
Confidence 34455666777776644 699999999999987 22 22 57888999999853 7
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHH
Q 002199 508 MREALEDCMMAATVDPNFLKVYMRAAKCHLVLG---EIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYIN 584 (954)
Q Consensus 508 ~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG---~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~ 584 (954)
+..|+..|.++..+. ++.+.+.+|.+|..-. ++..|.++|..|....- +...+.
T Consensus 309 ~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---------------------~~A~~~ 365 (552)
T KOG1550|consen 309 YEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---------------------ILAIYR 365 (552)
T ss_pred HHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---------------------hHHHHH
Confidence 888999999998875 5578999999998876 57899999999876532 344555
Q ss_pred HHHHHHH-hcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHhchhhhhhhhhhhhccCcchh
Q 002199 585 CSGKLLE-QKTSEAASSALERINEALSISSCSEKLLEMKADALYML-RKYEEAIQLCEHTLPVAEKNFASVLADNGSVTY 662 (954)
Q Consensus 585 ~a~~ll~-~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~l-g~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~ 662 (954)
++..+.. .+-......|+.++.++.... .+.+...++.++... +++..+...+.....+.-......
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~--------- 434 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSN--------- 434 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhH---------
Confidence 5555543 233334458999999998877 344444455444433 778777776666555543322100
Q ss_pred hHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Q 002199 663 SLARLWRWRLISKSYFC----IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS---- 734 (954)
Q Consensus 663 ~~~~l~a~~~Lg~~y~~----lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~---- 734 (954)
.+.+......+.. ..+.+.+...+.++... ....+...+|..|+.-
T Consensus 435 ----a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----------------------g~~~a~~~lgd~y~~g~g~~ 488 (552)
T KOG1550|consen 435 ----AAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ----------------------GNADAILKLGDYYYYGLGTG 488 (552)
T ss_pred ----HHHHHHhccccccccccccchhHHHHHHHHHHhc----------------------cCHHHHhhhcceeeecCCCC
Confidence 0000000001111 11344444444444322 1223445577777543
Q ss_pred CCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCCC
Q 002199 735 GRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA---LGQIADAIADCSLAMALDEN 791 (954)
Q Consensus 735 g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~---lg~~eeAi~~~ekAL~ldP~ 791 (954)
.+++.|...|..|... . +...+++|.++.. ...+..|.+++.++.+.+..
T Consensus 489 ~d~~~a~~~y~~a~~~-----~--~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 489 RDPEKAAAQYARASEQ-----G--AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSR 541 (552)
T ss_pred CChHHHHHHHHHHHHh-----h--hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence 5699999999999764 2 7888999988864 12389999999999887654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00048 Score=49.80 Aligned_cols=32 Identities=34% Similarity=0.427 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
.+|+++|.+|+.+|++++|+.+|+++|+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 56677777777777777777777777777765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00029 Score=51.29 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=31.8
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 002199 514 DCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQH 547 (954)
Q Consensus 514 ~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~ 547 (954)
+|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999973
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.11 Score=63.75 Aligned_cols=254 Identities=14% Similarity=0.129 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
.+|..+|.+.++.|...+|++.|-+| +++..|...-.+..+.|.|++-+.++..+-+.-...-.+
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id---------- 1169 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID---------- 1169 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch----------
Confidence 45556666666666666666655544 444555555555555666666555555554422111000
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~ 652 (954)
-.+...|...++..+ ++. +-..|+.+.+ ...|.-++..+.|+.|.-+|..+-
T Consensus 1170 ----------~eLi~AyAkt~rl~e-------lE~-fi~gpN~A~i-~~vGdrcf~~~~y~aAkl~y~~vS--------- 1221 (1666)
T KOG0985|consen 1170 ----------SELIFAYAKTNRLTE-------LEE-FIAGPNVANI-QQVGDRCFEEKMYEAAKLLYSNVS--------- 1221 (1666)
T ss_pred ----------HHHHHHHHHhchHHH-------HHH-HhcCCCchhH-HHHhHHHhhhhhhHHHHHHHHHhh---------
Confidence 001111112222221 111 1124555443 456788888888888877765431
Q ss_pred hhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHH-----HHHHHH-----HHHHH
Q 002199 653 VLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESS-----MSLAGT-----VRALL 722 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~-----~~l~~~-----~~~~~ 722 (954)
-|..|+..+..+|+|+.|+..-++|-... .+...--.+ ..+... +-.+.
T Consensus 1222 ----------------N~a~La~TLV~LgeyQ~AVD~aRKAns~k-----tWK~VcfaCvd~~EFrlAQiCGL~iivhad 1280 (1666)
T KOG0985|consen 1222 ----------------NFAKLASTLVYLGEYQGAVDAARKANSTK-----TWKEVCFACVDKEEFRLAQICGLNIIVHAD 1280 (1666)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHhhhccchh-----HHHHHHHHHhchhhhhHHHhcCceEEEehH
Confidence 34567888888888888888888774321 111100000 011000 01123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-C------CCHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL-D-E------NYTK 794 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l-d-P------~~~~ 794 (954)
.+-.+-..|...|-|++-|..++.+|.+. ......+..||.+|.+- ++++-.++++.-... + | +...
T Consensus 1281 eLeeli~~Yq~rGyFeElIsl~Ea~LGLE----RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqah 1355 (1666)
T KOG0985|consen 1281 ELEELIEYYQDRGYFEELISLLEAGLGLE----RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAH 1355 (1666)
T ss_pred hHHHHHHHHHhcCcHHHHHHHHHhhhchh----HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34456677889999999999999999887 66677778888777653 344444444432211 0 1 2344
Q ss_pred HHHHHHHHHHHhcCHHHHHHH
Q 002199 795 AVSRRAALHEMIRDYTQAASD 815 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~ 815 (954)
.|..+-.+|.+-..|+.|.-.
T Consensus 1356 lW~ElvfLY~~y~eyDNAa~t 1376 (1666)
T KOG0985|consen 1356 LWSELVFLYDKYEEYDNAALT 1376 (1666)
T ss_pred HHHHHHHHHHhhhhhhHHHHH
Confidence 566666777777777766543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.13 Score=56.72 Aligned_cols=148 Identities=17% Similarity=0.093 Sum_probs=96.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCcccccCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002199 458 AYKNNNLTEAEDFYTQGINSVP-LSETAGCCIKPLVLCYSNRAATRISLG-RMREALEDCMMAATVDPNFLKVYMRAAKC 535 (954)
Q Consensus 458 ~~~~g~y~eAi~~y~kAL~~~P-~~~~~~~~~~~la~~~~~lA~~y~~lg-~~eeAl~~~~kALel~P~~~~a~~~LA~i 535 (954)
..++|+++.|..+|.++-...+ -++ .....++..+++.|...+..+ +++.|+..+++++++-..... .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~---~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-------~ 72 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDP---DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-------M 72 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCc---HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-------c
Confidence 4678999999999999877652 221 123457788888888888888 888888888887765211000 0
Q ss_pred HHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCC
Q 002199 536 HLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCS 615 (954)
Q Consensus 536 y~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~ 615 (954)
.....+..+ .+...+..++..++..+.++...+|+..+..+-...|+.
T Consensus 73 ---~~~~~~~~e-----------------------------lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~ 120 (278)
T PF08631_consen 73 ---DKLSPDGSE-----------------------------LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNK 120 (278)
T ss_pred ---cccCCcHHH-----------------------------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC
Confidence 000000000 012334445566666666666667777777776677887
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHhchhhh
Q 002199 616 EKLLEMKADALYMLRKYEEAIQLCEHTLPVAE 647 (954)
Q Consensus 616 ~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p 647 (954)
+.++...-.++...++.+++.+.+.+++...+
T Consensus 121 ~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 121 PEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 88877777777778888888888888877643
|
It is also involved in sporulation []. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00063 Score=49.21 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002199 760 ICFCNRAAALQALGQIADAIADCSLAMALDEN 791 (954)
Q Consensus 760 ~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~ 791 (954)
.+|+++|.+|..+|++++|+.+|+++|+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35555666666666666666666666666554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.021 Score=61.71 Aligned_cols=134 Identities=18% Similarity=0.109 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
..-+..+.-.+..|++.+|...|..++...|++..+...++.||...|+.+.|...+...-..... .
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~----~--------- 201 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD----K--------- 201 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh----h---------
Confidence 445566777889999999999999999999999999999999999999999998887653221111 0
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEK 648 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~ 648 (954)
....+...+.+....-...+. ..+.+.+..+|++..+.+.+|..|...|++++|.+.+-..+..+..
T Consensus 202 --~~~~l~a~i~ll~qaa~~~~~-------~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 202 --AAHGLQAQIELLEQAAATPEI-------QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred --HHHHHHHHHHHHHHHhcCCCH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 000111222222222222222 2355677789999999999999999999999999999888877643
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.026 Score=61.39 Aligned_cols=129 Identities=16% Similarity=0.026 Sum_probs=86.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 002199 674 SKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIE 753 (954)
Q Consensus 674 g~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~ 753 (954)
+.+++..|++-+|....++.++-.|.+- .++...-.+++..|+...-...+++++..-..
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDl--------------------la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~ 169 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDL--------------------LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNA 169 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhh--------------------hhhhhhhhHHHhccchhhhhhHHHHhccccCC
Confidence 4456667777777777777777666442 23333345566667777777777777765222
Q ss_pred CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 754 SRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 754 ~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
+.|....+.-.++.++...|-|++|.+...++++++|.+..+...++.++.+.+++.++.+.+++.-..
T Consensus 170 dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~ 238 (491)
T KOG2610|consen 170 DLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD 238 (491)
T ss_pred CCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc
Confidence 335556666667777777777777777777777777777777777777777777777777776554333
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0023 Score=72.79 Aligned_cols=106 Identities=28% Similarity=0.312 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCCCCHHHHH
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQAL---GQIADAIADCSLAMALDENYTKAVS 797 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~l---g~~eeAi~~~ekAL~ldP~~~~al~ 797 (954)
+..++..|+-.+....+..||..|.+++... |....+|.++|.++++. |+.-.|+.+|..|++++|....+++
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~----~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~ 449 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYV----PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHF 449 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhc----cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHH
Confidence 4445556777777888999999999999998 88999999999999876 5888999999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHH
Q 002199 798 RRAALHEMIRDYTQAASDLQRLVSILENQSAEK 830 (954)
Q Consensus 798 ~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~ 830 (954)
.|++++..++++.+|+.+...+...+|.+...+
T Consensus 450 ~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~ 482 (758)
T KOG1310|consen 450 RLARALNELTRYLEALSCHWALQMSFPTDVARQ 482 (758)
T ss_pred HHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhh
Confidence 999999999999999999998888888655443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0014 Score=47.07 Aligned_cols=34 Identities=24% Similarity=0.503 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLS 481 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~ 481 (954)
++.|+.+|..++..|+|++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 5789999999999999999999999999999975
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.026 Score=64.79 Aligned_cols=185 Identities=16% Similarity=0.048 Sum_probs=119.2
Q ss_pred HHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 002199 623 ADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 623 A~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~ 702 (954)
..-..+..+...-|+..++||+++|+... +|..|+. -...-..+|..+|+++++.......
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAd-----------------AYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg 235 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCAD-----------------AYILLAE--EEASTIVEAEELLRQAVKAGEASLG 235 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhH-----------------HHhhccc--ccccCHHHHHHHHHHHHHHHHHhhc
Confidence 34455678889999999999999997744 3444432 1223367888888888775332221
Q ss_pred hhhHHHHHHHH----HHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHH
Q 002199 703 YGSEILESSMS----LAGTV--RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIA 776 (954)
Q Consensus 703 ~~~~~l~~~~~----l~~~~--~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~e 776 (954)
.... ...... +.... ..+.+...+|.++.+.|+.++||+.|+..++..|. .....++.+|..+++.++.|.
T Consensus 236 ~s~~-~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~--~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 236 KSQF-LQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN--LDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred hhhh-hhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc--cchhhHHHHHHHHHHhcCCHH
Confidence 1000 000000 00000 11233456899999999999999999999988742 246679999999999999999
Q ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh-cC---------------HHHHHHHHHHHHHHhhhhHHH
Q 002199 777 DAIADCSLAMAL-DENYTKAVSRRAALHEMI-RD---------------YTQAASDLQRLVSILENQSAE 829 (954)
Q Consensus 777 eAi~~~ekAL~l-dP~~~~al~~lA~ly~~l-g~---------------~eeAi~~~ekAL~l~p~~~~~ 829 (954)
++...+.+-=++ -|..+...|..|.+..+. ++ -..|++.+.+|++.+|.-..+
T Consensus 313 d~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 313 DVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 999998885333 256666666666554331 22 234677888888887665443
|
The molecular function of this protein is uncertain. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.4 Score=52.85 Aligned_cols=118 Identities=10% Similarity=0.032 Sum_probs=88.5
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCC----CcccccCCchHHHHHHHHHHHHHHcCCHH---
Q 002199 438 VSPTAAFQETCEMWRLRGNQAYKNN-NLTEAEDFYTQGINSVPL----SETAGCCIKPLVLCYSNRAATRISLGRMR--- 509 (954)
Q Consensus 438 ~~~~~~~~~~ae~l~~~G~~~~~~g-~y~eAi~~y~kAL~~~P~----~~~~~~~~~~la~~~~~lA~~y~~lg~~e--- 509 (954)
...+......+..+++.|...+..+ +|+.|+..+++|+++... .............++..++.+|+..+.++
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ 104 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVE 104 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 4455666778999999999999999 999999999999998422 22111222345889999999999988765
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 510 EALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 510 eAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
+|+..++.+-...|+.+..++..-.++...++.+++.+.+.+++..
T Consensus 105 ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 105 KALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3444444555556887777766666666689999999999988875
|
It is also involved in sporulation []. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0017 Score=46.71 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002199 760 ICFCNRAAALQALGQIADAIADCSLAMALDEN 791 (954)
Q Consensus 760 ~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~ 791 (954)
.+++.+|.+++.+|++++|+.+|++++.++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34455555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.017 Score=63.66 Aligned_cols=136 Identities=11% Similarity=0.032 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFK-SGRYTEAVEHYTVA 747 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~-~g~~eeAi~~y~kA 747 (954)
+|..+.....+.+..+.|...|.+|++..+.... .|...|.+.+. .++.+.|...|+.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~--------------------vy~~~A~~E~~~~~d~~~A~~Ife~g 62 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYH--------------------VYVAYALMEYYCNKDPKRARKIFERG 62 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-TH--------------------HHHHHHHHHHHTCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHH--------------------HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5666677777888899999999999854332322 34456767566 56777799999999
Q ss_pred HhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 748 LSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYT---KAVSRRAALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 748 L~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~---~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
++.. +.+..+|......+..+++.+.|...|++++..-|... ..|......-...|+.+.....++++.+++|
T Consensus 63 lk~f----~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 63 LKKF----PSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHC----CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 9998 77788888888999999999999999999998876655 5777778888889999999999999999988
Q ss_pred hhHH
Q 002199 825 NQSA 828 (954)
Q Consensus 825 ~~~~ 828 (954)
.+..
T Consensus 139 ~~~~ 142 (280)
T PF05843_consen 139 EDNS 142 (280)
T ss_dssp TS-H
T ss_pred hhhH
Confidence 7543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.93 E-value=1.1 Score=51.06 Aligned_cols=344 Identities=13% Similarity=0.024 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCc
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD----PNF 525 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~----P~~ 525 (954)
.+-.+-...|-..+.+.-..+....-+..|..+ .+..-.|...++.+.|.+|++.+..--+.- |-.
T Consensus 47 vl~grilnAffl~nld~Me~~l~~l~~~~~~s~----------~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~ 116 (549)
T PF07079_consen 47 VLGGRILNAFFLNNLDLMEKQLMELRQQFGKSA----------YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPW 116 (549)
T ss_pred HHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCch----------HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccch
Confidence 333344444556666666666666666677665 677778889999999999999886554431 110
Q ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-h-hhhhhHHHHHHHHHHHHHHH-----------hHHH
Q 002199 526 -----------LKVYMRAAKCHLVLGEIENAQHYYHKLLNSA-A-AVCLDRRITIEAADGLQKAQ-----------KVTE 581 (954)
Q Consensus 526 -----------~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~-P-~~~~~~~~~~ea~~~l~~~~-----------~~~~ 581 (954)
...-...|.++...|+|.+++..+++.+..- | ...-.......+...+.+.. -...
T Consensus 117 Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pd 196 (549)
T PF07079_consen 117 LDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPD 196 (549)
T ss_pred hhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChH
Confidence 1112346889999999999999998876531 1 00000000001111111100 0122
Q ss_pred HHHHHHHHHH------hcChHHH---HHHHHHHHHHHhcC---------------------CCCHHHHHHHHHHHHHccC
Q 002199 582 YINCSGKLLE------QKTSEAA---SSALERINEALSIS---------------------SCSEKLLEMKADALYMLRK 631 (954)
Q Consensus 582 ~l~~a~~ll~------~g~~~~a---~eAL~~l~kaL~~~---------------------P~~~~~~~~lA~~~~~lg~ 631 (954)
++..+.-|.. +.-|... .+-+..+.+.+-+- |+..-+...+-.-.+ .+
T Consensus 197 yYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~--~~ 274 (549)
T PF07079_consen 197 YYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFM--SD 274 (549)
T ss_pred HHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHh--cC
Confidence 2222222221 1111111 01112222222222 222211111111111 13
Q ss_pred HHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchh-----hH
Q 002199 632 YEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYG-----SE 706 (954)
Q Consensus 632 ~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~-----~~ 706 (954)
.+++...++......-.. .....+...-.+-......++...|..++.-..-++|...-.. .+
T Consensus 275 ~e~~~~~ce~ia~~~i~~------------Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~ 342 (549)
T PF07079_consen 275 PEQVGHFCEAIASSKIEK------------LKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPK 342 (549)
T ss_pred hHHHHHHHHHHHHHhHHH------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHH
Confidence 344444444332221000 0000011122222334577888888888887777777654211 00
Q ss_pred H--------------HHHHHHHHH--------HHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhccCCc--------
Q 002199 707 I--------------LESSMSLAG--------TVRALLHHKSAGNEAFKSGR-YTEAVEHYTVALSTNIESR-------- 755 (954)
Q Consensus 707 ~--------------l~~~~~l~~--------~~~~~~~~~~lG~~~~~~g~-~eeAi~~y~kAL~l~~~~~-------- 755 (954)
. ++..+.+.. +.+.+..+...|.-+...|. -++|+..++.++...+.+.
T Consensus 343 ~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~ 422 (549)
T PF07079_consen 343 VLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFL 422 (549)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 0 111111111 11222333445666777777 7778887777766532110
Q ss_pred ----------------------------------hhhHHHHHHH--HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002199 756 ----------------------------------PFAAICFCNR--AAALQALGQIADAIADCSLAMALDENYTKAVSRR 799 (954)
Q Consensus 756 ----------------------------------p~~a~~~~~l--A~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~l 799 (954)
..+..+-+.+ |.-++..|+|.+++-+..=..+++| .+.++..+
T Consensus 423 fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLl 501 (549)
T PF07079_consen 423 FVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLL 501 (549)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHH
Confidence 1122233333 3445678999999999999999999 89999999
Q ss_pred HHHHHHhcCHHHHHHHHHH
Q 002199 800 AALHEMIRDYTQAASDLQR 818 (954)
Q Consensus 800 A~ly~~lg~~eeAi~~~ek 818 (954)
|.+++...+|++|..++..
T Consensus 502 Gl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 502 GLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHhhHHHHHHHHHh
Confidence 9999999999999998764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.24 Score=56.31 Aligned_cols=174 Identities=16% Similarity=0.015 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHhchhhhh-hhhhhhh
Q 002199 581 EYINCSGKLLEQKTSEAASSALERINEALSI-SSCSEKLLEMKADALYM---LRKYEEAIQLCEHTLPVAEK-NFASVLA 655 (954)
Q Consensus 581 ~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~-~P~~~~~~~~lA~~~~~---lg~~eeAi~~~ekaL~l~p~-~~~~~~~ 655 (954)
..+++...|....+|+...+-++.+...-.. -+..+.+...+|.++.+ .|+.++|+..+..++..... +.+
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d---- 218 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD---- 218 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH----
Confidence 3445555566666777333322222222100 24567788899999999 99999999999996554432 222
Q ss_pred ccCcchhhHHHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002199 656 DNGSVTYSLARLWRWRLISKSYF---------CIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKS 726 (954)
Q Consensus 656 ~~~~~~~~~~~l~a~~~Lg~~y~---------~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 726 (954)
.+.++|.+|- ....+++|+..|.++.++.|+..... +
T Consensus 219 -------------~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GI---------------------N 264 (374)
T PF13281_consen 219 -------------TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGI---------------------N 264 (374)
T ss_pred -------------HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchH---------------------H
Confidence 3445565553 12248899999999999987654421 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH--------hhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 002199 727 AGNEAFKSGRYTEAVEHYTVAL--------STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY 792 (954)
Q Consensus 727 lG~~~~~~g~~eeAi~~y~kAL--------~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~ 792 (954)
++.++...|.-.+.....++.. +........+.+.+-.++.+..-.|++++|++.+++++.+.|..
T Consensus 265 ~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 265 AATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 2333333333222221111111 11111124556666777788888889999999999888887543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.11 Score=56.63 Aligned_cols=167 Identities=11% Similarity=0.000 Sum_probs=119.5
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchh-hhhhhhhhhhccCcch
Q 002199 583 INCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPV-AEKNFASVLADNGSVT 661 (954)
Q Consensus 583 l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l-~p~~~~~~~~~~~~~~ 661 (954)
...+..+...|+.. +|....++.|...|.+..++..--.+++.+|+...-...+++++.. +++-+-
T Consensus 107 h~~aai~~~~g~~h---~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~---------- 173 (491)
T KOG2610|consen 107 HAKAAILWGRGKHH---EAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPC---------- 173 (491)
T ss_pred hhhHHHhhcccccc---HHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcH----------
Confidence 33455556677776 6777788999999999888888888999999999999999888876 332211
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Q 002199 662 YSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAV 741 (954)
Q Consensus 662 ~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi 741 (954)
+ .+..-.++-.+...|-|++|.+.-++++++++.+.- +...++.++...+++.+++
T Consensus 174 ~----sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~W--------------------a~Ha~aHVlem~~r~Keg~ 229 (491)
T KOG2610|consen 174 Y----SYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCW--------------------ASHAKAHVLEMNGRHKEGK 229 (491)
T ss_pred H----HHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchH--------------------HHHHHHHHHHhcchhhhHH
Confidence 0 113345566778899999999999999999886643 3444678888889999999
Q ss_pred HHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002199 742 EHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAM 786 (954)
Q Consensus 742 ~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL 786 (954)
+...+--..-....-....-|-.-|.+|..-+.|+.|+..|..-|
T Consensus 230 eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 230 EFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 887765433211111222335556788888899999999998755
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.059 Score=50.34 Aligned_cols=98 Identities=20% Similarity=0.317 Sum_probs=78.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhccC--------CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------hCCC
Q 002199 727 AGNEAFKSGRYTEAVEHYTVALSTNIE--------SRPFAAICFCNRAAALQALGQIADAIADCSLAMA-------LDEN 791 (954)
Q Consensus 727 lG~~~~~~g~~eeAi~~y~kAL~l~~~--------~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~-------ldP~ 791 (954)
.|.-.+..|-|++|...+.+|+.+... ..-.++.++..|+.++..+|+|++++....++|. ++.+
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd 94 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD 94 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence 456667889999999999999987432 2246788999999999999999999988888874 4554
Q ss_pred C----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 792 Y----TKAVSRRAALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 792 ~----~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
. +.+.+.+|..+..+|+.++|+..|+.+-++..
T Consensus 95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMia 131 (144)
T PF12968_consen 95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIA 131 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 3 55678899999999999999999999999854
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0013 Score=73.12 Aligned_cols=67 Identities=31% Similarity=0.412 Sum_probs=53.5
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh--hH-------HHHHHHHHHHCCCCCcccccccccCCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY--DQ-------EQEIRKATKESPQNSHYGRSSDAYGYAC 932 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~--~~-------~e~~~~~~~~l~~~~~~r~~yD~~g~~~ 932 (954)
.-|-|+|||+..++++.+||++||+|..++||||.+.. +. ..++.++|+.+++ ...|..|=.||-++
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd-~k~renyl~yGtPd 172 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTD-KKRRENYLNYGTPD 172 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHhcCCCC
Confidence 56789999999999999999999999999999997652 11 2357788999986 44566677788663
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.1 Score=59.59 Aligned_cols=167 Identities=14% Similarity=0.008 Sum_probs=106.2
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhh-----h-cc--Ccc------hhhHHHHHHHHH
Q 002199 607 EALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVL-----A-DN--GSV------TYSLARLWRWRL 672 (954)
Q Consensus 607 kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~-----~-~~--~~~------~~~~~~l~a~~~ 672 (954)
..+..+|.....+..++.++..+|++..|.+++++||-.........- . .. ... +..+. .+.+.
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ff--lal~r 108 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFF--LALFR 108 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHH--HHHHH
Confidence 456789999999999999999999999999999999855432211111 0 00 000 11121 24455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002199 673 ISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI 752 (954)
Q Consensus 673 Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~ 752 (954)
....+.+.|-+..|+++.+-++.++|..+... ++..+-...++.++|+--++.++.......
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g------------------~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~ 170 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG------------------VLLFIDYYALRSRQYQWLIDFSESPLAKCY 170 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch------------------hHHHHHHHHHhcCCHHHHHHHHHhHhhhhh
Confidence 56677788889999999999999988844422 111233344566777777777666554211
Q ss_pred CC-chhhHHHHHHHHHHHHHhcCH---------------HHHHHHHHHHHHhCCCCH
Q 002199 753 ES-RPFAAICFCNRAAALQALGQI---------------ADAIADCSLAMALDENYT 793 (954)
Q Consensus 753 ~~-~p~~a~~~~~lA~~y~~lg~~---------------eeAi~~~ekAL~ldP~~~ 793 (954)
.. -...+..-+.+|.+++.+++- +.|...+.+|+...|.-.
T Consensus 171 ~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 171 RNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred hhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 00 011234556677777777777 777777777777766433
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.063 Score=60.86 Aligned_cols=176 Identities=11% Similarity=-0.032 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-hcCC
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRIS---LGRMREALEDCMMAA-TVDP 523 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~---lg~~eeAl~~~~kAL-el~P 523 (954)
.+....+=..|....+|+.-|.+.+..-.+ |... ......+-+.+|.++-+ .|+.++|+..+..++ ...+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~-----~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~ 214 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCD-----VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN 214 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Cccc-----hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC
Confidence 344555556677778888888777765444 2211 01112667788888888 999999999999955 4556
Q ss_pred CcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Q 002199 524 NFLKVYMRAAKCHLVL---------GEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKT 594 (954)
Q Consensus 524 ~~~~a~~~LA~iy~~l---------G~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~ 594 (954)
.+++.+..+|.+|..+ ...++|+..|.++.+++|+. -.-++.+..+...|.
T Consensus 215 ~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~--------------------Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 215 PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY--------------------YSGINAATLLMLAGH 274 (374)
T ss_pred CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc--------------------cchHHHHHHHHHcCC
Confidence 7899999999999753 34789999999999998753 112233333333332
Q ss_pred hHH----HHHHHHHHHHHH-----hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 595 SEA----ASSALERINEAL-----SISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 595 ~~~----a~eAL~~l~kaL-----~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
... ..+....+...+ ...-.+-..+-.++++.+..|++++|++.+++++.+.|..
T Consensus 275 ~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 275 DFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 111 001111111111 1112345566678889999999999999999999998754
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.16 Score=53.83 Aligned_cols=232 Identities=16% Similarity=0.112 Sum_probs=130.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHH
Q 002199 505 LGRMREALEDCMMAATVDPNF----LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVT 580 (954)
Q Consensus 505 lg~~eeAl~~~~kALel~P~~----~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~ 580 (954)
....++|+..|+++|++.+.- .+++-.+-.+++.+++|++-++.|.+.|..-..
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkS---------------------- 97 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKS---------------------- 97 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH----------------------
Confidence 447899999999999999865 468888899999999999999999998774211
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcc
Q 002199 581 EYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSV 660 (954)
Q Consensus 581 ~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~ 660 (954)
|. .++|.+ +.+..+..-+... .+. +--...|+..|+.-.+.
T Consensus 98 -----AV----TrNySE--KsIN~IlDyiStS-~~m----------------~LLQ~FYeTTL~ALkdA----------- 138 (440)
T KOG1464|consen 98 -----AV----TRNYSE--KSINSILDYISTS-KNM----------------DLLQEFYETTLDALKDA----------- 138 (440)
T ss_pred -----HH----hccccH--HHHHHHHHHHhhh-hhh----------------HHHHHHHHHHHHHHHhh-----------
Confidence 00 011111 2222111111111 011 11112222222211100
Q ss_pred hhhHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 002199 661 TYSLARLW--RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYT 738 (954)
Q Consensus 661 ~~~~~~l~--a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~e 738 (954)
.-.++| ....||.+|+..++|.+-...++++-+........- ...+..+.+..|...-+.|..+++-.
T Consensus 139 --KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed--------D~kKGtQLLEiYAlEIQmYT~qKnNK 208 (440)
T KOG1464|consen 139 --KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED--------DQKKGTQLLEIYALEIQMYTEQKNNK 208 (440)
T ss_pred --hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch--------hhhccchhhhhHhhHhhhhhhhcccH
Confidence 001122 234578999999888877777666544322211100 01112222334444556777778888
Q ss_pred HHHHHHHHHHhhccCC-chh-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCCH--HHHHHHHHHHHHhc
Q 002199 739 EAVEHYTVALSTNIES-RPF-AAICFCNRAAALQALGQIADAIADCSLAMALD-----ENYT--KAVSRRAALHEMIR 807 (954)
Q Consensus 739 eAi~~y~kAL~l~~~~-~p~-~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld-----P~~~--~al~~lA~ly~~lg 807 (954)
.-...|+++|.+.... +|. ...+.---|..+++.|+|++|..+|-.|+... |.-. --|+.+|..+++.|
T Consensus 209 kLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 209 KLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 8888899998875321 132 22233334577888999999999998888653 2222 23455566666554
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.25 Score=52.46 Aligned_cols=165 Identities=11% Similarity=0.085 Sum_probs=121.0
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYMLR-KYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYF 678 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg-~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~ 678 (954)
.|+..-..+|.++|.+-.+|..+-.++..++ +..+-++++..+++-+|++++ .|..+-.+.-
T Consensus 61 RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQ-----------------vWHHRr~ive 123 (318)
T KOG0530|consen 61 RALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQ-----------------VWHHRRVIVE 123 (318)
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchh-----------------HHHHHHHHHH
Confidence 7888889999999999888877777776654 678889999999999999977 4555556666
Q ss_pred HcCCHH-HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchh
Q 002199 679 CIGKLE-VALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPF 757 (954)
Q Consensus 679 ~lG~~e-eAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~ 757 (954)
.+|++. .-+++.+.++..+..+.. +|...-.+...-+.|+.-+.+..+.|+.+ ..
T Consensus 124 ~l~d~s~rELef~~~~l~~DaKNYH--------------------aWshRqW~~r~F~~~~~EL~y~~~Lle~D----i~ 179 (318)
T KOG0530|consen 124 LLGDPSFRELEFTKLMLDDDAKNYH--------------------AWSHRQWVLRFFKDYEDELAYADELLEED----IR 179 (318)
T ss_pred HhcCcccchHHHHHHHHhccccchh--------------------hhHHHHHHHHHHhhHHHHHHHHHHHHHHh----hh
Confidence 777777 778888888887666655 34445555666677999999998888876 33
Q ss_pred hHHHHHHHHHHHHH-h-----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002199 758 AAICFCNRAAALQA-L-----GQIADAIADCSLAMALDENYTKAVSRRAALHEM 805 (954)
Q Consensus 758 ~a~~~~~lA~~y~~-l-----g~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~ 805 (954)
+-.+|..+-.+... . -..+.-+.+..+.|.+.|++..+|..|.-++..
T Consensus 180 NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 180 NNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred ccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 44444433222111 1 134556677888899999999999999888875
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.18 Score=61.84 Aligned_cols=227 Identities=16% Similarity=0.068 Sum_probs=140.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHH
Q 002199 505 LGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYIN 584 (954)
Q Consensus 505 lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~ 584 (954)
.+..+.|.+..+++ +.+..|..+|.+.++.|...+|++.|-++ -+|. .++.
T Consensus 1088 i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika--dDps----------------------~y~e 1138 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPS----------------------NYLE 1138 (1666)
T ss_pred hhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcH----------------------HHHH
Confidence 34445555544443 45789999999999999999999999775 2332 2444
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhH
Q 002199 585 CSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSL 664 (954)
Q Consensus 585 ~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~ 664 (954)
........+.|++...-+...++-... | .+-..+-.+|.+.++..+-.+.+ ..|+...
T Consensus 1139 Vi~~a~~~~~~edLv~yL~MaRkk~~E-~---~id~eLi~AyAkt~rl~elE~fi-----~gpN~A~------------- 1196 (1666)
T KOG0985|consen 1139 VIDVASRTGKYEDLVKYLLMARKKVRE-P---YIDSELIFAYAKTNRLTELEEFI-----AGPNVAN------------- 1196 (1666)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhhcC-c---cchHHHHHHHHHhchHHHHHHHh-----cCCCchh-------------
Confidence 455555667777544444433333221 2 22233344566677766654433 2343321
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 665 ARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHY 744 (954)
Q Consensus 665 ~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y 744 (954)
....|.-.+..+.|+.|.-+|...- .|..++..+...|+|..|+..-
T Consensus 1197 -----i~~vGdrcf~~~~y~aAkl~y~~vS----------------------------N~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1197 -----IQQVGDRCFEEKMYEAAKLLYSNVS----------------------------NFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred -----HHHHhHHHhhhhhhHHHHHHHHHhh----------------------------hHHHHHHHHHHHHHHHHHHHHh
Confidence 2346888888999998887776542 2344667777778888888777
Q ss_pred HHHHhhc---------------------cCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 745 TVALSTN---------------------IESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 745 ~kAL~l~---------------------~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
++|-... --+-...+.-+-.+-..|...|-|++-|..++.+|-+.--+...+..||.+|
T Consensus 1244 RKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLY 1323 (1666)
T KOG0985|consen 1244 RKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILY 1323 (1666)
T ss_pred hhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 7763321 0001223444556667788899999999999999988777766667777666
Q ss_pred HHhcCHHHHHHHH
Q 002199 804 EMIRDYTQAASDL 816 (954)
Q Consensus 804 ~~lg~~eeAi~~~ 816 (954)
.+- ++++-.+++
T Consensus 1324 sky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1324 SKY-KPEKMMEHL 1335 (1666)
T ss_pred Hhc-CHHHHHHHH
Confidence 542 344444443
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.58 E-value=1.7 Score=55.36 Aligned_cols=102 Identities=15% Similarity=-0.003 Sum_probs=79.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHhcCCCcH
Q 002199 454 RGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISL----G---RMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 454 ~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~l----g---~~eeAl~~~~kALel~P~~~ 526 (954)
..++++..+.|++|+..|++.-..-|.-. .--.+.+..|.+.+.+ | .+++|+..|++. .-.|.-+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 552 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRK-------EGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAP 552 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcc-------cchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCc
Confidence 34567888899999999999999888753 2237788888887754 2 466777777663 3346667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhH
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDR 563 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~ 563 (954)
--|+..|.+|..+|+|+|-+++|.-|++..|..+...
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 553 LEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred hHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 7889999999999999999999999999998776443
|
|
| >KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0012 Score=65.96 Aligned_cols=63 Identities=32% Similarity=0.425 Sum_probs=49.8
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh-----hHHHHHHHHHHHCCCCCccccccccc
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY-----DQEQEIRKATKESPQNSHYGRSSDAY 928 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~-----~~~e~~~~~~~~l~~~~~~r~~yD~~ 928 (954)
..-|.+|.|.+..+..+|++.||++.+..||||+++. .+++.+.++++.|.+.....+.-|.|
T Consensus 53 LNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~~y 120 (250)
T KOG1150|consen 53 LNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLDVY 120 (250)
T ss_pred cChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 4559999999999999999999999999999999866 34566677888887633344555555
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.053 Score=59.84 Aligned_cols=99 Identities=11% Similarity=0.112 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHH
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRIS-LGRMREALEDCMMAATVDPNFLKV 528 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~-lg~~eeAl~~~~kALel~P~~~~a 528 (954)
+|....+...+.+..+.|..+|.+|++..+-.. .+|...|.+.+. .++.+.|...|+.+++..|.+...
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~----------~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~ 72 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTY----------HVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDF 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-T----------HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCH----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHH
Confidence 577777788888889999999999996555444 788889999777 455666999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhchh
Q 002199 529 YMRAAKCHLVLGEIENAQHYYHKLLNSAAA 558 (954)
Q Consensus 529 ~~~LA~iy~~lG~~eeAl~~yekaL~l~P~ 558 (954)
|......+..+++.+.|..+|++++..-|.
T Consensus 73 ~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~ 102 (280)
T PF05843_consen 73 WLEYLDFLIKLNDINNARALFERAISSLPK 102 (280)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCCTSSC
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999987554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.085 Score=53.82 Aligned_cols=103 Identities=17% Similarity=0.060 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
+-+.++..+...+++++|+..++.++....+. . -...+-.+++.+.+.+|.+++|+..++...
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De-~----------------lk~l~~lRLArvq~q~~k~D~AL~~L~t~~ 153 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDE-N----------------LKALAALRLARVQLQQKKADAALKTLDTIK 153 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhH-H----------------HHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence 45678999999999999999999988643211 1 112234468999999999999999887654
Q ss_pred hhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Q 002199 749 STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYT 793 (954)
Q Consensus 749 ~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~ 793 (954)
.- ...+.....+|.++...|+-++|+..|++++..+++.+
T Consensus 154 ~~-----~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 154 EE-----SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred cc-----cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 33 34566677899999999999999999999999975543
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.41 Score=50.98 Aligned_cols=130 Identities=10% Similarity=0.051 Sum_probs=74.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH-HHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHH
Q 002199 601 ALERINEALSISSCSEKLLEMKADALYMLRKYE-EAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFC 679 (954)
Q Consensus 601 AL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~e-eAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~ 679 (954)
-++++.+.++.+|.+-.+|..+-.+...+|++. .-++.++.+|..+.+++. +|..+-.+...
T Consensus 97 El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYH-----------------aWshRqW~~r~ 159 (318)
T KOG0530|consen 97 ELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYH-----------------AWSHRQWVLRF 159 (318)
T ss_pred HHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchh-----------------hhHHHHHHHHH
Confidence 344555566666666667766666666777666 666777777776666644 44455555566
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHcCCHHHHHHHHHHHHhhccC
Q 002199 680 IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEA------FKSGRYTEAVEHYTVALSTNIE 753 (954)
Q Consensus 680 lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~------~~~g~~eeAi~~y~kAL~l~~~ 753 (954)
-+.++.-+.+....++.+--+.... ...--+. ...-..+.-+.+..+.|.+.
T Consensus 160 F~~~~~EL~y~~~Lle~Di~NNSAW--------------------N~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~v-- 217 (318)
T KOG0530|consen 160 FKDYEDELAYADELLEEDIRNNSAW--------------------NQRYFVITNTKGVISKAELERELNYTKDKILLV-- 217 (318)
T ss_pred HhhHHHHHHHHHHHHHHhhhccchh--------------------heeeEEEEeccCCccHHHHHHHHHHHHHHHHhC--
Confidence 6667777777766666543322211 0000000 00011233455666677777
Q ss_pred CchhhHHHHHHHHHHHHH
Q 002199 754 SRPFAAICFCNRAAALQA 771 (954)
Q Consensus 754 ~~p~~a~~~~~lA~~y~~ 771 (954)
|.+..+|..|.-++..
T Consensus 218 --P~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 218 --PNNESAWNYLKGLLEL 233 (318)
T ss_pred --CCCccHHHHHHHHHHh
Confidence 6777788877766664
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.41 E-value=3.8 Score=55.56 Aligned_cols=85 Identities=19% Similarity=0.129 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHH---hhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHH
Q 002199 737 YTEAVEHYTVAL---STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAA 813 (954)
Q Consensus 737 ~eeAi~~y~kAL---~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi 813 (954)
..+-|-.+++++ ..+++.....+.+|...|.+....|+++.|..++-.|.+.. -+.++..+|..+...|+-..|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 334444444443 23444557789999999999999999999999999998877 5788899999999999999999
Q ss_pred HHHHHHHHHh
Q 002199 814 SDLQRLVSIL 823 (954)
Q Consensus 814 ~~~ekAL~l~ 823 (954)
..+++.+++.
T Consensus 1723 ~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1723 SVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHhh
Confidence 9999999663
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=3.4 Score=49.39 Aligned_cols=88 Identities=16% Similarity=0.080 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
.+.....+++..|..++....|++|.++|.+.- -.-++..||+.+.+|++ ++.....-
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~------------------~~e~~~ecly~le~f~~----LE~la~~L 848 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG------------------DTENQIECLYRLELFGE----LEVLARTL 848 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------------------chHhHHHHHHHHHhhhh----HHHHHHhc
Confidence 344556677888888888888888888877532 22355666666666654 33334445
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKL 552 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yeka 552 (954)
|++.+.+-.+|..+...|.-++|++.|-+.
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 777777778888888888888888888653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.092 Score=62.25 Aligned_cols=165 Identities=17% Similarity=0.095 Sum_probs=119.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHH-HH----HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002199 461 NNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAAT-RI----SLGRMREALEDCMMAATVDPNFLKVYMRAAKC 535 (954)
Q Consensus 461 ~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~-y~----~lg~~eeAl~~~~kALel~P~~~~a~~~LA~i 535 (954)
.|+-+.++.++.++.+. ++-.. ..-.++.+.+..... ++ .....+.|.+.+...++..|+..-.++..|++
T Consensus 201 ~gdR~~GL~~L~~~~~~-~~i~~---~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~ 276 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKS-ENIRS---PLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRL 276 (468)
T ss_pred CCcHHHHHHHHHHHhcc-CCcch---HHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 48899999999998772 22110 001122222222222 22 23467889999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCC
Q 002199 536 HLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCS 615 (954)
Q Consensus 536 y~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~ 615 (954)
+...|+.++|++.|++++..... +.+.. ...++.++..++.+.+|+ +|...+.+.++.+..+
T Consensus 277 ~~~~g~~~~Ai~~~~~a~~~q~~--------------~~Ql~-~l~~~El~w~~~~~~~w~---~A~~~f~~L~~~s~WS 338 (468)
T PF10300_consen 277 ERLKGNLEEAIESFERAIESQSE--------------WKQLH-HLCYFELAWCHMFQHDWE---EAAEYFLRLLKESKWS 338 (468)
T ss_pred HHHhcCHHHHHHHHHHhccchhh--------------HHhHH-HHHHHHHHHHHHHHchHH---HHHHHHHHHHhccccH
Confidence 99999999999999998853221 11221 344788899999999999 7888888888887775
Q ss_pred -HHHHHHHHHHHHHccCH-------HHHHHHHHHhchhhh
Q 002199 616 -EKLLEMKADALYMLRKY-------EEAIQLCEHTLPVAE 647 (954)
Q Consensus 616 -~~~~~~lA~~~~~lg~~-------eeAi~~~ekaL~l~p 647 (954)
..+.+..|-|+..+++. ++|..++.++-.+..
T Consensus 339 ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 339 KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 45567789999999999 777777777655543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.14 Score=47.91 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=77.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCC-c-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cC
Q 002199 452 RLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCI-K-PLVLCYSNRAATRISLGRMREALEDCMMAAT-------VD 522 (954)
Q Consensus 452 ~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~-~-~la~~~~~lA~~y~~lg~~eeAl~~~~kALe-------l~ 522 (954)
...|...+..|-|++|...|.+|+...-..+...... . .-+.+|..++.++..+|+|++++....++|. ++
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 3445677888999999999999998765443111111 1 1378999999999999999999998888885 44
Q ss_pred CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 523 PNF----LKVYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 523 P~~----~~a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
.+. +.+.+.+|..+..+|+.++|+..|+.+-++
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 444 456678899999999999999999998774
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.13 Score=55.74 Aligned_cols=153 Identities=10% Similarity=0.013 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-H
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF-L 526 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~-~ 526 (954)
.+.-...+......|++.+|...|..++...|++. .+...++.||+..|+.+.|...+...-.-.... .
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~----------~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~ 203 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENS----------EAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAA 203 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccc----------hHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHH
Confidence 34455678888999999999999999999999997 899999999999999999888776532221111 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERIN 606 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~ 606 (954)
..+...-..+.+.....+. ..+++.+..+|++ ....+.++..+...|+++ .|++.+-
T Consensus 204 ~~l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd-------------------~~aa~~lA~~~~~~g~~e---~Ale~Ll 260 (304)
T COG3118 204 HGLQAQIELLEQAAATPEI-QDLQRRLAADPDD-------------------VEAALALADQLHLVGRNE---AALEHLL 260 (304)
T ss_pred HHHHHHHHHHHHHhcCCCH-HHHHHHHHhCCCC-------------------HHHHHHHHHHHHHcCCHH---HHHHHHH
Confidence 1100111222222222221 2334445556654 556677777888888887 6677666
Q ss_pred HHHhcCC--CCHHHHHHHHHHHHHccCHH
Q 002199 607 EALSISS--CSEKLLEMKADALYMLRKYE 633 (954)
Q Consensus 607 kaL~~~P--~~~~~~~~lA~~~~~lg~~e 633 (954)
..+..+- .+......+-.++...|.-+
T Consensus 261 ~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 261 ALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 6665542 33445555555555555333
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.008 Score=43.23 Aligned_cols=30 Identities=33% Similarity=0.368 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 494 CYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 494 ~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
+|+.+|.+|..+|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455555555555555555555555555554
|
... |
| >PRK01773 hscB co-chaperone HscB; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0066 Score=61.61 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=48.8
Q ss_pred cchhhhhccccC--CCHHHHHHHHHHHHHhhCCCCCCChh---------HHHHHHHHHHHCCCCCcccccc
Q 002199 866 LDFYLILGVKAS--DTAADIKKAYRKAALKHHPDKRSEYD---------QEQEIRKATKESPQNSHYGRSS 925 (954)
Q Consensus 866 ~dyYkiLgv~~~--a~~~eIkkAYrklAl~~HPDK~~~~~---------~~e~~~~~~~~l~~~~~~r~~y 925 (954)
.+||.++|+++. .+...+++.|+++..++|||+..... ....++++|.+|.+ |-.|+.|
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkd-Pl~RA~Y 71 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKD-PILRAEA 71 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCC-hHHHHHH
Confidence 479999999877 77899999999999999999975442 12468899999986 7778877
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.012 Score=42.25 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 794 KAVSRRAALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 794 ~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
.+|+.+|.+|..+|++++|+.+|++++++.|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3556666666666666666666666666654
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.04 E-value=2.1 Score=51.01 Aligned_cols=120 Identities=14% Similarity=0.057 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhh
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVY----------MRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLD 562 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~----------~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~ 562 (954)
.+|..+|...+..-.++-|...|-++-.. |. .+.. ..+|.+-.--|+|++|...|-.+=+.+-
T Consensus 693 rLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL----- 765 (1189)
T KOG2041|consen 693 RLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL----- 765 (1189)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh-----
Confidence 78888988877766666666666554221 11 1111 3445555667899999988865422110
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 002199 563 RRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSI--SSCSEKLLEMKADALYMLRKYEEAIQLCE 640 (954)
Q Consensus 563 ~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~--~P~~~~~~~~lA~~~~~lg~~eeAi~~~e 640 (954)
..+ .+...|+|- ..++.++..-.- +..-..++..+|..+..+..|++|.++|.
T Consensus 766 ---Aie-------------------lr~klgDwf---rV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 766 ---AIE-------------------LRKKLGDWF---RVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred ---hHH-------------------HHHhhhhHH---HHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001 111222222 122211111000 11124577888999999999999999988
Q ss_pred Hhch
Q 002199 641 HTLP 644 (954)
Q Consensus 641 kaL~ 644 (954)
+.-.
T Consensus 821 ~~~~ 824 (1189)
T KOG2041|consen 821 YCGD 824 (1189)
T ss_pred hccc
Confidence 7643
|
|
| >KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.013 Score=53.17 Aligned_cols=50 Identities=32% Similarity=0.347 Sum_probs=46.6
Q ss_pred hhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHCCC
Q 002199 868 FYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQ 917 (954)
Q Consensus 868 yYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l~~ 917 (954)
--.||||.+..+..-||+++|+..+..|||+.-++=...+|+++...+..
T Consensus 58 A~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~ 107 (112)
T KOG0723|consen 58 AALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEG 107 (112)
T ss_pred HHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhc
Confidence 35799999999999999999999999999999999999999999988865
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.32 Score=54.76 Aligned_cols=82 Identities=22% Similarity=0.127 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHH-HHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLI-SKSYF 678 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~L-g~~y~ 678 (954)
.-+..|++||+.+|.+..++..+-.+.....+-++....+++++...|.+.. +|.-++. -...+
T Consensus 49 ~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~---------------LW~~yL~~~q~~~ 113 (321)
T PF08424_consen 49 RKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPE---------------LWREYLDFRQSNF 113 (321)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChH---------------HHHHHHHHHHHHh
Confidence 5677888999999999999998888888999999999999999999887644 3432221 11223
Q ss_pred HcCCHHHHHHHHHHHHhh
Q 002199 679 CIGKLEVALDLLQKLEQV 696 (954)
Q Consensus 679 ~lG~~eeAl~~l~kal~l 696 (954)
..-.+......|.+++..
T Consensus 114 ~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 114 ASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred ccCcHHHHHHHHHHHHHH
Confidence 334577888888888764
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.92 E-value=2.7 Score=49.20 Aligned_cols=68 Identities=15% Similarity=0.007 Sum_probs=56.4
Q ss_pred hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCC-CHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHh
Q 002199 756 PFAAICFCNRAAALQALGQIADAIADCSLAMAL------DEN-YTKAVSRRAALHEMIRD-YTQAASDLQRLVSIL 823 (954)
Q Consensus 756 p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l------dP~-~~~al~~lA~ly~~lg~-~eeAi~~~ekAL~l~ 823 (954)
......+..+|.++..+|+-..|..+|..+++. ++- .|-|+|.+|.+|..++. ..+|..++.+|-...
T Consensus 446 Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 446 DDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 345556778899999999999999999988843 111 37899999999999999 999999999998774
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.87 E-value=5 Score=46.68 Aligned_cols=84 Identities=15% Similarity=0.059 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHH
Q 002199 467 AEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGE-IENA 545 (954)
Q Consensus 467 Ai~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~-~eeA 545 (954)
-+..|+.|+...+.+. .+|.+......+.+.+.+--..|.++|..+|+++..|...|.-.+..+. .+.|
T Consensus 90 Iv~lyr~at~rf~~D~----------~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~sa 159 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDV----------KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESA 159 (568)
T ss_pred HHHHHHHHHHhcCCCH----------HHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHH
Confidence 4567888888888775 7788777777777778888889999999999999999888888877776 8888
Q ss_pred HHHHHHHHhhchhhh
Q 002199 546 QHYYHKLLNSAAAVC 560 (954)
Q Consensus 546 l~~yekaL~l~P~~~ 560 (954)
...|.++|+.+|+.+
T Consensus 160 RalflrgLR~npdsp 174 (568)
T KOG2396|consen 160 RALFLRGLRFNPDSP 174 (568)
T ss_pred HHHHHHHhhcCCCCh
Confidence 888999999888765
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.017 Score=42.53 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 795 AVSRRAALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
+|..||.+|..+|+|++|+.+|+++|.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 467788888888888888888888776643
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=1.8 Score=47.79 Aligned_cols=177 Identities=15% Similarity=0.025 Sum_probs=120.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYML----RKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISK 675 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~l----g~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~ 675 (954)
.++..+..+-.. .++.....++.+|..- .+..+|+.+|..+....-.. +.+.||.
T Consensus 59 ~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~-------------------a~~~lg~ 117 (292)
T COG0790 59 KALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAE-------------------ALFNLGL 117 (292)
T ss_pred HHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHH-------------------HHHhHHH
Confidence 555555555431 2335667777777663 36788999998655443211 4567888
Q ss_pred HHHH----cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----C--CHHHHHHHH
Q 002199 676 SYFC----IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS-----G--RYTEAVEHY 744 (954)
Q Consensus 676 ~y~~----lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~-----g--~~eeAi~~y 744 (954)
+|.. ..++.+|..+|+++........ ......+|..|..- - +...|+..|
T Consensus 118 ~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-------------------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~ 178 (292)
T COG0790 118 MYANGRGVPLDLVKALKYYEKAAKLGNVEA-------------------ALAMYRLGLAYLSGLQALAVAYDDKKALYLY 178 (292)
T ss_pred HHhcCCCcccCHHHHHHHHHHHHHcCChhH-------------------HHHHHHHHHHHHcChhhhcccHHHHhHHHHH
Confidence 8876 4589999999999987643221 11122344444332 1 334799999
Q ss_pred HHHHhhccCCchhhHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-------------
Q 002199 745 TVALSTNIESRPFAAICFCNRAAALQA----LGQIADAIADCSLAMALDENYTKAVSRRAALHEMIR------------- 807 (954)
Q Consensus 745 ~kAL~l~~~~~p~~a~~~~~lA~~y~~----lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg------------- 807 (954)
.++-... ...+.+++|.+|.. ..++.+|+.+|.++.+... ..+.+.++ ++...|
T Consensus 179 ~~aa~~~------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 179 RKAAELG------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred HHHHHhc------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 9987765 67788888988765 3489999999999999876 88889999 666665
Q ss_pred --CHHHHHHHHHHHHHHhhh
Q 002199 808 --DYTQAASDLQRLVSILEN 825 (954)
Q Consensus 808 --~~eeAi~~~ekAL~l~p~ 825 (954)
+...|...+..+....+.
T Consensus 250 ~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 250 EEDKKQALEWLQKACELGFD 269 (292)
T ss_pred CCCHHHHHHHHHHHHHcCCh
Confidence 777788888777766433
|
|
| >TIGR00714 hscB Fe-S protein assembly co-chaperone HscB | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.011 Score=59.09 Aligned_cols=49 Identities=14% Similarity=0.115 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCCh---------hHHHHHHHHHHHCCCCCcccccccc
Q 002199 878 DTAADIKKAYRKAALKHHPDKRSEY---------DQEQEIRKATKESPQNSHYGRSSDA 927 (954)
Q Consensus 878 a~~~eIkkAYrklAl~~HPDK~~~~---------~~~e~~~~~~~~l~~~~~~r~~yD~ 927 (954)
.+..+|+++||+++.+||||+.... .....++++|++|.+ |..|+.|+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~-p~~Ra~ylL 60 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKD-PLMRAEYML 60 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCC-hhhhHHHHH
Confidence 4678899999999999999985432 223578899999986 888999974
|
This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.78 E-value=6.1 Score=47.00 Aligned_cols=340 Identities=13% Similarity=0.062 Sum_probs=187.7
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHH-HHHHHHcCCHH
Q 002199 431 EEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNR-AATRISLGRMR 509 (954)
Q Consensus 431 e~~~~~~~~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~l-A~~y~~lg~~e 509 (954)
+.+...........|-.---|..-|..-++.|..+.++..|++++...|-.- .+|... +.+--..|+.+
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~Sv----------dlW~~Y~~f~~n~~~d~~ 131 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSV----------DLWLSYLAFLKNNNGDPE 131 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHH----------HHHHHHHHHHhccCCCHH
Confidence 3333333334445566666788888888999999999999999999888653 444433 33333456666
Q ss_pred HHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHH-----HHhHHH
Q 002199 510 EALEDCMMAATVDPNF---LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQK-----AQKVTE 581 (954)
Q Consensus 510 eAl~~~~kALel~P~~---~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~-----~~~~~~ 581 (954)
.-...|++|+...-.+ ...|-..-......+++..-...|++.|+. |....++. ...-...+.. ......
T Consensus 132 ~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei-P~~~~~~~-f~~f~~~l~~~~~~~l~~~d~ 209 (577)
T KOG1258|consen 132 TLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI-PLHQLNRH-FDRFKQLLNQNEEKILLSIDE 209 (577)
T ss_pred HHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh-hhhHhHHH-HHHHHHHHhcCChhhhcCHHH
Confidence 6667778887765432 233333334445667778888888888774 32111110 0000000000 000000
Q ss_pred HHHHHHHHHHh---cChHHHHHHHHH-HHHHHhcCCCCHHHHHHHH-------HHHHHccCHHHHHHHHHHhchhhhhhh
Q 002199 582 YINCSGKLLEQ---KTSEAASSALER-INEALSISSCSEKLLEMKA-------DALYMLRKYEEAIQLCEHTLPVAEKNF 650 (954)
Q Consensus 582 ~l~~a~~ll~~---g~~~~a~eAL~~-l~kaL~~~P~~~~~~~~lA-------~~~~~lg~~eeAi~~~ekaL~l~p~~~ 650 (954)
........... .....-.+-+.. ........+........+. .++.......+.+-.++..+...-...
T Consensus 210 ~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhv 289 (577)
T KOG1258|consen 210 LIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHV 289 (577)
T ss_pred HHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcccccccc
Confidence 00000000000 000000000000 0011111111111111111 222223333444444554443311110
Q ss_pred hhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 651 ASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE 730 (954)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~ 730 (954)
.....+.+..|......-...|+++...-.|++|+---... ...|...+..
T Consensus 290 ---------kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y--------------------~efWiky~~~ 340 (577)
T KOG1258|consen 290 ---------KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY--------------------DEFWIKYARW 340 (577)
T ss_pred ---------CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh--------------------HHHHHHHHHH
Confidence 01222333456666667778999999999999986432211 1234444555
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 002199 731 AFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYT 810 (954)
Q Consensus 731 ~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~e 810 (954)
....|+..-|-..+..+.++.. +..+.++..-+..-...|++..|...++++..--|....+-+..+.....+|+.+
T Consensus 341 m~~~~~~~~~~~~~~~~~~i~~---k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~ 417 (577)
T KOG1258|consen 341 MESSGDVSLANNVLARACKIHV---KKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLE 417 (577)
T ss_pred HHHcCchhHHHHHHHhhhhhcC---CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchh
Confidence 5556888888888888877753 5566677767777788899999999999999877999999999999999999999
Q ss_pred HHHH
Q 002199 811 QAAS 814 (954)
Q Consensus 811 eAi~ 814 (954)
.+..
T Consensus 418 ~~~~ 421 (577)
T KOG1258|consen 418 DANY 421 (577)
T ss_pred hhhH
Confidence 8885
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.78 E-value=5.7 Score=46.67 Aligned_cols=79 Identities=13% Similarity=0.041 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCC
Q 002199 466 EAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF----LKVYMRAAKCHLVLGE 541 (954)
Q Consensus 466 eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~----~~a~~~LA~iy~~lG~ 541 (954)
...+.+.......|+++ ..+.+.|..+...|+.+.|+..++..+. +.. .-.++.+|.++.-+.+
T Consensus 251 ~~~~~Ll~~~~~~p~ga----------~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~ 318 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGA----------LWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQ 318 (546)
T ss_pred HHHHHhHHHHHhCCCCc----------cHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445556678876 7788888899999998888888888887 332 3467788999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 002199 542 IENAQHYYHKLLNSA 556 (954)
Q Consensus 542 ~eeAl~~yekaL~l~ 556 (954)
|..|..++.....+.
T Consensus 319 ~~~aad~~~~L~des 333 (546)
T KOG3783|consen 319 YSRAADSFDLLRDES 333 (546)
T ss_pred HHHHhhHHHHHHhhh
Confidence 999999998877653
|
|
| >COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.0074 Score=63.11 Aligned_cols=70 Identities=26% Similarity=0.341 Sum_probs=54.3
Q ss_pred ccCCCcchhhhhccc---cCCCHHHHHHHHHHHHHhhCCCCC-----CCh-hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 861 KKGEPLDFYLILGVK---ASDTAADIKKAYRKAALKHHPDKR-----SEY-DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 861 k~~~~~dyYkiLgv~---~~a~~~eIkkAYrklAl~~HPDK~-----~~~-~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
+.....|+|.+||++ ..+.+..|.+++++..++||||+. ... +.+.-|..++++|++ +..|..||.--..
T Consensus 38 k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D-~~~R~qyDS~df~ 116 (379)
T COG5269 38 KNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGD-RKLRLQYDSNDFD 116 (379)
T ss_pred hhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhcc-HHHHhhccccccc
Confidence 334457899999986 456678899999999999999996 222 345677788999986 8899999975443
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.39 Score=54.89 Aligned_cols=166 Identities=16% Similarity=0.049 Sum_probs=105.0
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHH-----HHHH--HHH---HHHHHHhHHHHHHHH
Q 002199 517 MAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRR-----ITIE--AAD---GLQKAQKVTEYINCS 586 (954)
Q Consensus 517 kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~-----~~~e--a~~---~l~~~~~~~~~l~~a 586 (954)
..|..+|-+..+++.++.++..+|++..|.+.+++||-.-.......- .... ..- ....-.-....+...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 346778999999999999999999999999999998764221100000 0000 000 000111133445555
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHhcCCC-CHHH-HHHHHHHHHHccCHHHHHHHHHHhchhhhhh-hhhhhhccCcchhh
Q 002199 587 GKLLEQKTSEAASSALERINEALSISSC-SEKL-LEMKADALYMLRKYEEAIQLCEHTLPVAEKN-FASVLADNGSVTYS 663 (954)
Q Consensus 587 ~~ll~~g~~~~a~eAL~~l~kaL~~~P~-~~~~-~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~-~~~~~~~~~~~~~~ 663 (954)
..+.++|-+. .|++...-.+.++|. ++-. ++.+=...++.++|+--+..++........+ .....+
T Consensus 111 ~~L~~RG~~r---TAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-------- 179 (360)
T PF04910_consen 111 QSLGRRGCWR---TALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-------- 179 (360)
T ss_pred HHHHhcCcHH---HHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc--------
Confidence 6666778887 899999999999998 6553 3444445567788888888887655531111 000000
Q ss_pred HHHHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhhCC
Q 002199 664 LARLWRWRLISKSYFCIGKL---------------EVALDLLQKLEQVGS 698 (954)
Q Consensus 664 ~~~l~a~~~Lg~~y~~lG~~---------------eeAl~~l~kal~l~p 698 (954)
..+.++.+++.+++- +.|...+.+|+...|
T Consensus 180 -----~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 180 -----FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred -----HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 234567777878877 899999999987755
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.047 Score=44.03 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 760 ICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 760 ~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
.+++.+|..+.++|+|++|..+++.+|+++|++.++......+-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 46788999999999999999999999999999988776554443
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.065 Score=59.99 Aligned_cols=102 Identities=9% Similarity=0.087 Sum_probs=79.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCccccc--------CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 453 LRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGC--------CIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 453 ~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~--------~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
.-|..+|++++|..|+--|..||+++.+-...+. -..--..+--.+..||+.+++.+.|+....+.|.++|.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 3456678888888888888888887644321111 11112445567899999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLN 554 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~ 554 (954)
+..-+++.|.|+..+.+|.+|...+--+.-
T Consensus 261 ~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887765533
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.37 E-value=1.9 Score=47.63 Aligned_cols=189 Identities=12% Similarity=0.025 Sum_probs=128.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCcHHHH
Q 002199 454 RGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISL----GRMREALEDCMMAATVDPNFLKVY 529 (954)
Q Consensus 454 ~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~l----g~~eeAl~~~~kALel~P~~~~a~ 529 (954)
.+......+++..|+..|..+-.... ......++.+|..- .+..+|+..|..+ .....+.+.
T Consensus 47 ~~~~~~~~~~~~~a~~~~~~a~~~~~------------~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~ 112 (292)
T COG0790 47 NGAGSAYPPDYAKALKSYEKAAELGD------------AAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEAL 112 (292)
T ss_pred ccccccccccHHHHHHHHHHhhhcCC------------hHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHH
Confidence 33445577899999999998877221 15777888887754 4688899999944 445678899
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh----cChHHHHHH
Q 002199 530 MRAAKCHLV----LGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQ----KTSEAASSA 601 (954)
Q Consensus 530 ~~LA~iy~~----lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~----g~~~~a~eA 601 (954)
+.||.+|.. ..++.+|..+|+++.+..-... ....+.++..+..- +-...-..|
T Consensus 113 ~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a------------------~~~~~~l~~~~~~g~~~~~~~~~~~~A 174 (292)
T COG0790 113 FNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA------------------ALAMYRLGLAYLSGLQALAVAYDDKKA 174 (292)
T ss_pred HhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH------------------HHHHHHHHHHHHcChhhhcccHHHHhH
Confidence 999999988 4599999999999988743211 11122223222221 111111367
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHH
Q 002199 602 LERINEALSISSCSEKLLEMKADALYM----LRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSY 677 (954)
Q Consensus 602 L~~l~kaL~~~P~~~~~~~~lA~~~~~----lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y 677 (954)
+..|.++-... ++.....+|.+|.. ..++.+|+.+|.++.+... .. +++.++ ++
T Consensus 175 ~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~-----------------a~~~~~-~~ 232 (292)
T COG0790 175 LYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GA-----------------ACYNLG-LM 232 (292)
T ss_pred HHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HH-----------------HHHHHH-HH
Confidence 78887776655 77888889988765 4489999999999988765 11 566777 66
Q ss_pred HHcC---------------CHHHHHHHHHHHHhh
Q 002199 678 FCIG---------------KLEVALDLLQKLEQV 696 (954)
Q Consensus 678 ~~lG---------------~~eeAl~~l~kal~l 696 (954)
+..| +...|...+..+...
T Consensus 233 ~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 233 YLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred HhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 6555 666666666666544
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.062 Score=43.34 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAK 534 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~ 534 (954)
.+++.+|..++++|+|++|+.+++.+|+++|++..+......
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 467888888888999999999999999988888777655443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.32 Score=49.78 Aligned_cols=106 Identities=11% Similarity=0.026 Sum_probs=84.6
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 442 AAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
....+...++..+|..|++.|+++.|++.|.++....... ...+.+++++..+.+..+++..+...+.++-.+
T Consensus 30 ~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~-------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 30 LGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP-------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred cchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH-------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455667889999999999999999999999988876543 345788899999999999999999999988765
Q ss_pred CCC--c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 522 DPN--F----LKVYMRAAKCHLVLGEIENAQHYYHKLLN 554 (954)
Q Consensus 522 ~P~--~----~~a~~~LA~iy~~lG~~eeAl~~yekaL~ 554 (954)
-.. + .+.....|..++..++|.+|.+.|-.++.
T Consensus 103 ~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 103 IEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 422 2 22344457788889999999999877654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.14 Score=55.87 Aligned_cols=70 Identities=11% Similarity=-0.076 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 491 LVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 491 la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
+...+.++-.+|+..++++.|+.+.+..+.+.|+++.-+..+|.+|.++|.+..|+..++..++..|+.+
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 4577888999999999999999999999999999999999999999999999999999999999999764
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.031 Score=39.61 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 794 KAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 794 ~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
++++.+|.++..+|++++|+..|+++++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 36677777777777777777777777777553
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.10 E-value=8.7 Score=45.85 Aligned_cols=103 Identities=14% Similarity=0.123 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVY 529 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~ 529 (954)
.+...|...|+..+|..+++.|...+...|.+. ....++....+++.||+.+.+.+.|++.++.|-+.+|..+-..
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~----~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q 431 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN----YSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ 431 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchh----hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence 455677888999999999999999999998875 3455688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 530 MRAAKCHLVLGEIENAQHYYHKLLNSA 556 (954)
Q Consensus 530 ~~LA~iy~~lG~~eeAl~~yekaL~l~ 556 (954)
+.+-.+...-+.-++|+.+..+.....
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 999999999999999999998877653
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.08 E-value=4.4 Score=46.40 Aligned_cols=314 Identities=10% Similarity=0.021 Sum_probs=170.7
Q ss_pred HHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002199 471 YTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYH 550 (954)
Q Consensus 471 y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~ye 550 (954)
++.-|+-+|.+- ..|+.+-.-|..++.+++-.+.|++...-.|-...+|...-.--+...+|..-...|.
T Consensus 31 LRerIkdNPtnI----------~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~ 100 (660)
T COG5107 31 LRERIKDNPTNI----------LSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFG 100 (660)
T ss_pred HHHHhhcCchhH----------HHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHH
Confidence 455677889885 8999999999999999999999999999888887777665555555677777777777
Q ss_pred HHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--hcC-hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002199 551 KLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLE--QKT-SEAASSALERINEALSISSCSEKLLEMKADALY 627 (954)
Q Consensus 551 kaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~--~g~-~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~ 627 (954)
++|...-.. ..+..++...+..-. .|+ --...+|.+..-..+..+|.....|...+..+.
T Consensus 101 rCL~k~l~l-----------------dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle 163 (660)
T COG5107 101 RCLKKSLNL-----------------DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLE 163 (660)
T ss_pred HHHhhhccH-----------------hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 777632110 001111111111100 010 111224555555555567777777766655443
Q ss_pred H---------ccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002199 628 M---------LRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGS 698 (954)
Q Consensus 628 ~---------lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p 698 (954)
. +.+.+.-...|.++|..--.+.+..-.++.......-++-+.-..| -..--|-.|...|++...+..
T Consensus 164 ~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvg---e~sp~ym~ar~~yqe~~nlt~ 240 (660)
T COG5107 164 YIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVG---ETSPIYMSARQRYQEIQNLTR 240 (660)
T ss_pred hccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhc---ccCHHHHHHHHHHHHHHHHhc
Confidence 3 3345556677888877644443321111110000000000000000 011224566666666554421
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHc-CCHHHHH-HHHHHHHhhccCCchhhHHHHHHHHHHHHH
Q 002199 699 ISDRYGSEILESSMSLAGTVRALLHHKSA-----GNEAFKS-GRYTEAV-EHYTVALSTNIESRPFAAICFCNRAAALQA 771 (954)
Q Consensus 699 ~~~~~~~~~l~~~~~l~~~~~~~~~~~~l-----G~~~~~~-g~~eeAi-~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~ 771 (954)
.-....+-.++......... -..|.+. -+-+... +-..+-| -.|++++..- +..+.+|+.....+..
T Consensus 241 Gl~v~~~~~~Rt~nK~~r~s--~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~----~~~~evw~dys~Y~~~ 314 (660)
T COG5107 241 GLSVKNPINLRTANKAARTS--DSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYF----YYAEEVWFDYSEYLIG 314 (660)
T ss_pred cccccCchhhhhhccccccc--cchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHhh
Confidence 11000000000000000000 0001100 0111111 1222222 2356666666 7888899988888889
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 772 LGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 772 lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
.++-+.|+....+++...|. ..+.++.+|....+-+.-..+|++.++-+
T Consensus 315 isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L 363 (660)
T COG5107 315 ISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDL 363 (660)
T ss_pred ccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHH
Confidence 99999999999998888877 66788888888888777777777766543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.08 E-value=21 Score=48.90 Aligned_cols=101 Identities=15% Similarity=0.054 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC------
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALD-EN------ 791 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld-P~------ 791 (954)
.....|.+.|.+....|+++.|-.++-.|.+.. .+.++..+|..++..|+-..|+..+++.++++ |+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~ 1741 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYT 1741 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcc
Confidence 345678889999999999999999998887764 56889999999999999999999999999764 22
Q ss_pred ----C------HHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHhhh
Q 002199 792 ----Y------TKAVSRRAALHEMIRDY--TQAASDLQRLVSILEN 825 (954)
Q Consensus 792 ----~------~~al~~lA~ly~~lg~~--eeAi~~~ekAL~l~p~ 825 (954)
. ..+.+.++.-....+++ .+-+.+|+.+.+++|.
T Consensus 1742 ~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1742 DTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 1 12333334444444553 3556788888888663
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.04 E-value=6.6 Score=43.54 Aligned_cols=289 Identities=16% Similarity=0.106 Sum_probs=163.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHH
Q 002199 495 YSNRAATRISLGRMREALEDCMMAATV--DPN--------FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRR 564 (954)
Q Consensus 495 ~~~lA~~y~~lg~~eeAl~~~~kALel--~P~--------~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~ 564 (954)
...++.......++++++..|...+.. -|. .-.+...+|.+|...|++.+-.......-..-..
T Consensus 7 ~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~------ 80 (411)
T KOG1463|consen 7 LLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSS------ 80 (411)
T ss_pred HHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH------
Confidence 366777777888889999999999874 121 1346788999999999998776666554332111
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHhcCC----C--CHHHHHHHHHHHHHccCHHHHHH
Q 002199 565 ITIEAADGLQKAQKVTEYINCSGKLLE-QKTSEAASSALERINEALSISS----C--SEKLLEMKADALYMLRKYEEAIQ 637 (954)
Q Consensus 565 ~~~ea~~~l~~~~~~~~~l~~a~~ll~-~g~~~~a~eAL~~l~kaL~~~P----~--~~~~~~~lA~~~~~lg~~eeAi~ 637 (954)
+.++......-.+...... ....+ .-+..+..+++-.. . ...+-..+..+|+..++|.+|+.
T Consensus 81 --------v~KakaaKlvR~Lvd~~~~~~~~~~---~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAla 149 (411)
T KOG1463|consen 81 --------VSKAKAAKLVRSLVDMFLKIDDGTG---DQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALA 149 (411)
T ss_pred --------hhhHHHHHHHHHHHHHHccCCCCcc---hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1111110000001111110 00111 11111111111100 0 01233457889999999999998
Q ss_pred HHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHH
Q 002199 638 LCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGT 717 (954)
Q Consensus 638 ~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~ 717 (954)
+....+..-..--.- ..+ +..+..-..+|+.+.+..+|...+..|-.....- ..+..+.
T Consensus 150 L~~~L~rElKKlDDK---------~lL--vev~llESK~y~~l~Nl~KakasLTsART~Anai--YcpPqlQ-------- 208 (411)
T KOG1463|consen 150 LINDLLRELKKLDDK---------ILL--VEVHLLESKAYHALRNLPKAKASLTSARTTANAI--YCPPQLQ-------- 208 (411)
T ss_pred HHHHHHHHHHhcccc---------cce--eeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc--ccCHHHH--------
Confidence 887776543221000 000 1134455788899999999988887764432110 0011011
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--CCchhhHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhCCCCH
Q 002199 718 VRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI--ESRPFAAICFCNRAAALQALGQIAD--AIADCSLAMALDENYT 793 (954)
Q Consensus 718 ~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~--~~~p~~a~~~~~lA~~y~~lg~~ee--Ai~~~ekAL~ldP~~~ 793 (954)
+..=..-|..+....+|..|..+|=+|++-.. +.+......+-.+-.|-..++..++ ++-.-..+++......
T Consensus 209 ---a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i 285 (411)
T KOG1463|consen 209 ---ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDI 285 (411)
T ss_pred ---HHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcch
Confidence 11112246777777999999999999987532 2223334444444555556666655 4444556777788889
Q ss_pred HHHHHHHHHHHH--hcCHHHHHHHHHHHHHHhh
Q 002199 794 KAVSRRAALHEM--IRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 794 ~al~~lA~ly~~--lg~~eeAi~~~ekAL~l~p 824 (954)
.++...|.++.. +.+|+.|+..|..-|.-+|
T Consensus 286 ~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 286 DAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 999999888854 5678888888877665543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.04 Score=40.52 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhch
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNSAA 557 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l~P 557 (954)
+|..||.+|..+|+|++|+.+|+++|.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 467888888888888888888888776543
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.16 Score=53.67 Aligned_cols=92 Identities=18% Similarity=0.139 Sum_probs=69.7
Q ss_pred HHHcCCHHHHHHHHHHHHhhcc---CCchhhHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHHhCC------CCHH
Q 002199 731 AFKSGRYTEAVEHYTVALSTNI---ESRPFAAICFCNRAAALQALGQIA-------DAIADCSLAMALDE------NYTK 794 (954)
Q Consensus 731 ~~~~g~~eeAi~~y~kAL~l~~---~~~p~~a~~~~~lA~~y~~lg~~e-------eAi~~~ekAL~ldP------~~~~ 794 (954)
+.....+++|++.|.-|+-... ..+...+.++..+|++|..+++.+ .|+..|.++++... +...
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 3445678899999988875421 222467889999999999999854 45555555554432 2357
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 795 AVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
.++.+|.++.++|++++|+.+|.+++..
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 8889999999999999999999999976
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.2 Score=54.77 Aligned_cols=80 Identities=14% Similarity=-0.017 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
....+.++=..|.+.++++.|+.+.+..+.+.|+++ .-+..+|.+|.++|.+..|+.+++..++..|+.+
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp----------~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDP----------YEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 445667777889999999999999999999999997 7889999999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 002199 527 KVYMRAAKCH 536 (954)
Q Consensus 527 ~a~~~LA~iy 536 (954)
.+.....++.
T Consensus 250 ~a~~ik~ql~ 259 (269)
T PRK10941 250 ISEMIRAQIH 259 (269)
T ss_pred hHHHHHHHHH
Confidence 8776655543
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.12 Score=55.74 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002199 452 RLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMR 531 (954)
Q Consensus 452 ~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~ 531 (954)
...+...++.|+.++|..+|+.|+.+.|.++ .++...|.......+.-+|-.+|-+||.+.|.+.+++.+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p----------~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNP----------QILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCH----------HHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 3445566788999999999999999999997 899999999988899999999999999999999988887
Q ss_pred HHHH
Q 002199 532 AAKC 535 (954)
Q Consensus 532 LA~i 535 (954)
+++.
T Consensus 190 R~RT 193 (472)
T KOG3824|consen 190 RART 193 (472)
T ss_pred hhcc
Confidence 7654
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.059 Score=38.14 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002199 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLS 481 (954)
Q Consensus 449 e~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~ 481 (954)
++++.+|.+++..|++++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999973
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.57 E-value=2.8 Score=42.17 Aligned_cols=150 Identities=13% Similarity=0.065 Sum_probs=101.2
Q ss_pred HHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q 002199 622 KADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISD 701 (954)
Q Consensus 622 lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~ 701 (954)
-+.-+...+..++|+..|..+-+..-..++ +.+....+.+....|+...|+..|..+-.-.+...
T Consensus 64 aAL~lA~~~k~d~Alaaf~~lektg~g~Yp---------------vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~ 128 (221)
T COG4649 64 AALKLAQENKTDDALAAFTDLEKTGYGSYP---------------VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQ 128 (221)
T ss_pred HHHHHHHcCCchHHHHHHHHHHhcCCCcch---------------HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcc
Confidence 344556677888888887776555444433 23566778888999999999999998866544332
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHH
Q 002199 702 RYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIAD 781 (954)
Q Consensus 702 ~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~ 781 (954)
. .+. .+....+.++...|-|++-....+.. ..+..|....+...||.+-++.|++..|...
T Consensus 129 ~-----~rd-----------~ARlraa~lLvD~gsy~dV~srvepL---a~d~n~mR~sArEALglAa~kagd~a~A~~~ 189 (221)
T COG4649 129 I-----GRD-----------LARLRAAYLLVDNGSYDDVSSRVEPL---AGDGNPMRHSAREALGLAAYKAGDFAKAKSW 189 (221)
T ss_pred h-----hhH-----------HHHHHHHHHHhccccHHHHHHHhhhc---cCCCChhHHHHHHHHhHHHHhccchHHHHHH
Confidence 1 111 12223567778888888755544332 2223377777888889999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHh
Q 002199 782 CSLAMALDENYTKAVSRRAALHEMI 806 (954)
Q Consensus 782 ~ekAL~ldP~~~~al~~lA~ly~~l 806 (954)
|..+.. +...+....+++.+.+.+
T Consensus 190 F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 190 FVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred HHHHHc-cccCcHHHHHHHHHHHHH
Confidence 988766 666677777777766543
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.27 Score=45.77 Aligned_cols=95 Identities=13% Similarity=0.050 Sum_probs=74.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhcC
Q 002199 454 RGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGR-----------MREALEDCMMAATVD 522 (954)
Q Consensus 454 ~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~-----------~eeAl~~~~kALel~ 522 (954)
++..+++.|++-+|+++.+..+...+++.. ...++...|.+++.+.. .-.|++.|.++..+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~-------~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES-------SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc-------hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 577899999999999999999999888751 12456666777765543 356899999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
|..+..++.+|.-+-..-.|++++.-.+++|.+
T Consensus 75 p~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 75 PDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 999888888887776667777777777777664
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.71 Score=48.76 Aligned_cols=109 Identities=14% Similarity=-0.031 Sum_probs=69.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHhhcc
Q 002199 680 IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYT-------EAVEHYTVALSTNI 752 (954)
Q Consensus 680 lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~e-------eAi~~y~kAL~l~~ 752 (954)
.-.+++|++.|.-|+-..... -......+..+..+|.+|...++.+ .|++.|.+|+....
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~-------------~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~ 156 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIK-------------KEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENED 156 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-------------CCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCc
Confidence 345777888777765431100 0011233455666788888888754 45555555555432
Q ss_pred --CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHH
Q 002199 753 --ESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY-TKAVSRRAA 801 (954)
Q Consensus 753 --~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~-~~al~~lA~ 801 (954)
...-....+++.+|.++.++|++++|+.+|.+++...... ...+..+|+
T Consensus 157 ~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 157 FPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred CCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 2234567789999999999999999999999999764322 234555544
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.051 Score=66.31 Aligned_cols=52 Identities=31% Similarity=0.298 Sum_probs=42.7
Q ss_pred CcchhhhhccccCC----CHHHHHHHHHHHHHhhCCCCCCCh-hHHHHHHHHHHHCC
Q 002199 865 PLDFYLILGVKASD----TAADIKKAYRKAALKHHPDKRSEY-DQEQEIRKATKESP 916 (954)
Q Consensus 865 ~~dyYkiLgv~~~a----~~~eIkkAYrklAl~~HPDK~~~~-~~~e~~~~~~~~l~ 916 (954)
..+-|+||.++-.. ....|+++|+|+|.+|||||++.- +++++.+++|+-+.
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence 34679999887443 336799999999999999999865 67899999998886
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.14 Score=55.32 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002199 722 LHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAA 801 (954)
Q Consensus 722 ~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ 801 (954)
......+....+.|+.++|...|+.|+.+. |.++.++...|......++.-+|-.+|-+||.++|.+.+|+.++++
T Consensus 117 ~~Al~~A~~~~~~Gk~ekA~~lfeHAlala----P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 117 ILALKAAGRSRKDGKLEKAMTLFEHALALA----PTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhcC----CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 333445666778899999999999999999 8888999999999988899999999999999999999999988875
Q ss_pred HH
Q 002199 802 LH 803 (954)
Q Consensus 802 ly 803 (954)
..
T Consensus 193 T~ 194 (472)
T KOG3824|consen 193 TT 194 (472)
T ss_pred cc
Confidence 43
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.44 Score=44.38 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=75.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcC-----------HHHHHHHHHHHHHhCCCCHHH
Q 002199 727 AGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQ-----------IADAIADCSLAMALDENYTKA 795 (954)
Q Consensus 727 lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~-----------~eeAi~~~ekAL~ldP~~~~a 795 (954)
++..++..|++-+|++..+..+....+. ...+.++..-|.++..+.. +-.|++.|.++..+.|..+..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~-~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGED-ESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS 80 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCC-CchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence 4667899999999999999999887543 2233677777887766542 557889999999999999888
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 796 VSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 796 l~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
++.+|.-+-...-|++++.--+++|.+
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 888888877777788888888887776
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.20 E-value=2.7 Score=47.36 Aligned_cols=153 Identities=12% Similarity=0.016 Sum_probs=101.8
Q ss_pred HHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002199 468 EDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGR------------MREALEDCMMAATVDPNFLKVYMRAAKC 535 (954)
Q Consensus 468 i~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~------------~eeAl~~~~kALel~P~~~~a~~~LA~i 535 (954)
...|++.++.+|.+. .+|..+....-.+-. .+.-+..|++||+.+|++...+..+-.+
T Consensus 5 ~~el~~~v~~~P~di----------~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~ 74 (321)
T PF08424_consen 5 TAELNRRVRENPHDI----------EAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEE 74 (321)
T ss_pred HHHHHHHHHhCcccH----------HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 346888999999986 788877765554432 4677889999999999999999998888
Q ss_pred HHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHH----HHHHHHHHHHhc
Q 002199 536 HLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAAS----SALERINEALSI 611 (954)
Q Consensus 536 y~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~----eAL~~l~kaL~~ 611 (954)
.......++....+++++..+|....-- ..++......+..-.+.... ++|..+......
T Consensus 75 ~~~~~~~~~l~~~we~~l~~~~~~~~LW----------------~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~ 138 (321)
T PF08424_consen 75 GEKVWDSEKLAKKWEELLFKNPGSPELW----------------REYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSG 138 (321)
T ss_pred HHHhCCHHHHHHHHHHHHHHCCCChHHH----------------HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999988653211 11111111111111122111 222222222211
Q ss_pred C-----------CCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhh
Q 002199 612 S-----------SCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVA 646 (954)
Q Consensus 612 ~-----------P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~ 646 (954)
. ..-..++..+...+...|..+.|+..++..++++
T Consensus 139 ~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 139 RMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 1 0113466677888889999999999999999886
|
|
| >KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.059 Score=55.17 Aligned_cols=39 Identities=31% Similarity=0.543 Sum_probs=35.6
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD 903 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~ 903 (954)
-..||++|||...++..+++.+|.+|+.++|||.++...
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~a 84 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEA 84 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccc
Confidence 456999999999999999999999999999999987653
|
|
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.042 Score=60.60 Aligned_cols=106 Identities=27% Similarity=0.277 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-----------C----CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNI-----------E----SRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~-----------~----~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ 787 (954)
...+.|...++.++|..|+.-|.+++..-. + .......++.+++.+-++++.+..|+.....+++
T Consensus 224 ~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~ 303 (372)
T KOG0546|consen 224 KKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR 303 (372)
T ss_pred hhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc
Confidence 344568888999999999999999876421 0 1123345677899999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 788 LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 788 ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
.++....+++.++..+..+.++++|+++++.+....|++..
T Consensus 304 ~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 304 DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 99999999999999999999999999999999999666544
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.54 Score=59.99 Aligned_cols=186 Identities=16% Similarity=0.143 Sum_probs=132.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002199 619 LEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGS 698 (954)
Q Consensus 619 ~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p 698 (954)
....+......+.+.+|.+ .-+++.+..+-.... ...... .|..|+.++..++++++|+..-+++.-+..
T Consensus 935 ~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~-------h~~~~~--~~~~La~l~~~~~d~~~Ai~~~~ka~ii~e 1004 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVL-------HPEVAS--KYRSLAKLSNRLGDNQEAIAQQRKACIISE 1004 (1236)
T ss_pred hhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhc-------chhHHH--HHHHHHHHHhhhcchHHHHHhcccceeeec
Confidence 3445666777778888877 555554433211110 111112 567889999999999999999888754321
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----cCCchhhHHHHHHHHHHHHHhcC
Q 002199 699 ISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN----IESRPFAAICFCNRAAALQALGQ 774 (954)
Q Consensus 699 ~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~----~~~~p~~a~~~~~lA~~y~~lg~ 774 (954)
... -.........+.+++...+..+....|+..+.+++.+. ...+|.-+.+..+++.++..+++
T Consensus 1005 R~~------------g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e 1072 (1236)
T KOG1839|consen 1005 RVL------------GKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEE 1072 (1236)
T ss_pred hhc------------cCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHH
Confidence 110 11123445567778888888899999999999988763 24568888889999999999999
Q ss_pred HHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 775 IADAIADCSLAMALDE--------NYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 775 ~eeAi~~~ekAL~ldP--------~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
++.|+.+.+.|+.+.- .....+..+++++..++++..|+...+....+++..
T Consensus 1073 ~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~q 1132 (1236)
T KOG1839|consen 1073 ADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQ 1132 (1236)
T ss_pred HHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHh
Confidence 9999999999998642 234567777888888888888888888888886654
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.08 E-value=4.2 Score=44.69 Aligned_cols=190 Identities=14% Similarity=0.100 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhh--------ccCcchhhHHHHHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLA--------DNGSVTYSLARLWRWR 671 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~--------~~~~~~~~~~~l~a~~ 671 (954)
+-|.....+++++|..+.+|..+|+--. --..+|..+++++|+.....+..... +.....+.-..+++-.
T Consensus 202 ~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKR 279 (556)
T KOG3807|consen 202 ARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKR 279 (556)
T ss_pred HHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHH
Confidence 4455666788899998888888776322 23556777777777655433221000 0000012223345666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcCCHHHHHHHHHHHH
Q 002199 672 LISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE---AFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 672 ~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~---~~~~g~~eeAi~~y~kAL 748 (954)
.|+.+-.++|+..+|++.++...+-.|. ..++.....+....-++.+|...-.+ |-.......|--+|..|+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl-----~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaAL 354 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPL-----LTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAAL 354 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHH
Confidence 7899999999999999999998775551 11222222222222222222211111 223333445555666554
Q ss_pred hhcc-CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 749 STNI-ESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 749 ~l~~-~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
-... -.....+..-..+|..-.. -.|++...+|++.+|.-+..++.+-
T Consensus 355 LK~RAVa~kFspd~asrRGLS~AE----~~AvEAihRAvEFNPHVPkYLLE~k 403 (556)
T KOG3807|consen 355 LKTRAVSEKFSPETASRRGLSTAE----INAVEAIHRAVEFNPHVPKYLLEMK 403 (556)
T ss_pred HHHHHHHhhcCchhhhhccccHHH----HHHHHHHHHHhhcCCCCcHHHHHHH
Confidence 3210 0001223333333322222 3578889999999999888766553
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.3 Score=62.25 Aligned_cols=190 Identities=15% Similarity=0.127 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD--- 522 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~--- 522 (954)
..+....+.|......+.+.+|.+ .-+++.+..+-. +..+...+.+|..++..+..++++++|+....++.-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~--~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~ 1006 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVM--GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERV 1006 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhh--hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechh
Confidence 456677888888888999998888 555554433211 11223345899999999999999999999988887653
Q ss_pred -----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHH
Q 002199 523 -----PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEA 597 (954)
Q Consensus 523 -----P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~ 597 (954)
|+....|.+++...+..+....|+..+.+++.+-- +.
T Consensus 1007 ~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~--------------------------------Ls------ 1048 (1236)
T KOG1839|consen 1007 LGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKL--------------------------------LS------ 1048 (1236)
T ss_pred ccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhc--------------------------------cc------
Confidence 45677788888777777777777777776655310 00
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHH
Q 002199 598 ASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSY 677 (954)
Q Consensus 598 a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y 677 (954)
--...|.-..+..+++.++..+++++.|+.+++.|+.....-.. .........+..++.++
T Consensus 1049 ----------~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g---------~~~l~~~~~~~~~a~l~ 1109 (1236)
T KOG1839|consen 1049 ----------SGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLG---------PKELETALSYHALARLF 1109 (1236)
T ss_pred ----------cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcC---------ccchhhhhHHHHHHHHH
Confidence 00134666666778888888899999999999999886543221 11111222455566666
Q ss_pred HHcCCHHHHHHHHHHHHh
Q 002199 678 FCIGKLEVALDLLQKLEQ 695 (954)
Q Consensus 678 ~~lG~~eeAl~~l~kal~ 695 (954)
...+++..|+...+..+.
T Consensus 1110 ~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1110 ESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred hhhHHHHHHHHHHhhHHH
Confidence 667777666666665544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.8 Score=45.68 Aligned_cols=88 Identities=17% Similarity=-0.004 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF 525 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~ 525 (954)
+....+..........++.+++..++...--+.|..+ .+-..-|..++..|+|.+|+..++.+.+-.|..
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~----------e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~ 77 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFP----------ELDLFDGWLHIVRGDWDDALRLLRELEERAPGF 77 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCch----------HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 4456778888888899999999999998888999987 888889999999999999999999999989999
Q ss_pred HHHHHHHHHHHHHcCCHH
Q 002199 526 LKVYMRAAKCHLVLGEIE 543 (954)
Q Consensus 526 ~~a~~~LA~iy~~lG~~e 543 (954)
+.+--.++.|+..+++..
T Consensus 78 p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 78 PYAKALLALCLYALGDPS 95 (160)
T ss_pred hHHHHHHHHHHHHcCChH
Confidence 988889999999888865
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.4 Score=43.31 Aligned_cols=66 Identities=15% Similarity=0.102 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHH
Q 002199 468 EDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF--LKVYMRAAKCHLVLGEIE 543 (954)
Q Consensus 468 i~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~--~~a~~~LA~iy~~lG~~e 543 (954)
+..+++++..+|++. .+.+.+|..++..|++++|++.+-.++..++++ ..+.-.+-.++..+|.-+
T Consensus 8 ~~al~~~~a~~P~D~----------~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 8 IAALEAALAANPDDL----------DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHSTT-H----------HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHcCCCCH----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 344555555555554 555555555555555555555555555555443 334444444444444433
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.94 E-value=11 Score=40.61 Aligned_cols=204 Identities=12% Similarity=0.057 Sum_probs=116.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CcHHHHHHHHH
Q 002199 460 KNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP-----NFLKVYMRAAK 534 (954)
Q Consensus 460 ~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P-----~~~~a~~~LA~ 534 (954)
+..+.++|+..|++++++.+.... --..++-.+-.+++.+++|++-++.|.+.|..-. ++..--.+--.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKge------WGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~Il 112 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGE------WGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSIL 112 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccch------hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 445889999999999999987641 1135666777889999999999999988775311 11000000000
Q ss_pred HHH-HcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Q 002199 535 CHL-VLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQK----VTEYINCSGKLLEQKTSEAASSALERINEAL 609 (954)
Q Consensus 535 iy~-~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~----~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL 609 (954)
-|. ...+.+.-.+.|+..| ..+..+.. ......++..++..++|....+.+..+.+.-
T Consensus 113 DyiStS~~m~LLQ~FYeTTL-----------------~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SC 175 (440)
T KOG1464|consen 113 DYISTSKNMDLLQEFYETTL-----------------DALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSC 175 (440)
T ss_pred HHHhhhhhhHHHHHHHHHHH-----------------HHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHh
Confidence 011 1111222222222222 22222222 1223346777777788876666666665554
Q ss_pred hcCC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc
Q 002199 610 SISS---------CSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI 680 (954)
Q Consensus 610 ~~~P---------~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l 680 (954)
+... .-.++|..--+.|-.+.+-..-..+|+++|.+...-+. ++-.-.+.-.=|..+++.
T Consensus 176 q~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH-----------PlImGvIRECGGKMHlre 244 (440)
T KOG1464|consen 176 QTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH-----------PLIMGVIRECGGKMHLRE 244 (440)
T ss_pred ccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc-----------hHHHhHHHHcCCcccccc
Confidence 4332 12345555566777788878888899998877532211 110000111225678899
Q ss_pred CCHHHHHHHHHHHHhhC
Q 002199 681 GKLEVALDLLQKLEQVG 697 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~ 697 (954)
|++++|-.-|=+|.+-.
T Consensus 245 g~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 245 GEFEKAHTDFFEAFKNY 261 (440)
T ss_pred chHHHHHhHHHHHHhcc
Confidence 99999988888877643
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.08 Score=35.92 Aligned_cols=32 Identities=34% Similarity=0.366 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
.+|..+|.+++.+++++.|+..++++++++|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45667777777777777777777777766664
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.09 Score=35.67 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002199 761 CFCNRAAALQALGQIADAIADCSLAMALDEN 791 (954)
Q Consensus 761 ~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~ 791 (954)
++..+|.++..++++++|+..+++++.++|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455555555555555555555555555543
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.12 Score=57.19 Aligned_cols=114 Identities=17% Similarity=0.052 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCccc--cc----CCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVP---LSETA--GC----CIKPLVLCYSNRAATRISLGRMREALEDCM 516 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P---~~~~~--~~----~~~~la~~~~~lA~~y~~lg~~eeAl~~~~ 516 (954)
...+.....|+..++.++|..|..-|.+++.... .+... .. .......++.+++.+-+.++.+..|+....
T Consensus 220 ~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~ 299 (372)
T KOG0546|consen 220 EREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTN 299 (372)
T ss_pred hhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccc
Confidence 3445566788999999999999999999987543 11100 00 111235678889999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 517 MAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 517 kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
-+++.++...+++++++..+..+.++++|++.++.+....|.+
T Consensus 300 ~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d 342 (372)
T KOG0546|consen 300 EALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPND 342 (372)
T ss_pred cccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcch
Confidence 9999999999999999999999999999999999999999875
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.62 E-value=1.4 Score=45.13 Aligned_cols=101 Identities=16% Similarity=0.039 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHH----
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDEN--YTK---- 794 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~--~~~---- 794 (954)
-..+..+|..|.+.|+++.|++.|.++...... .......++++..+....+++.....++.++-.+-.. +..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS-PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 356778999999999999999999998876532 2456778888889999999999999999998765322 222
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 795 AVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
.....|..++..++|..|.+.|-.++.-
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 2334467778888999998887666544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.46 Score=41.33 Aligned_cols=69 Identities=13% Similarity=0.195 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
..+....+.|..+|.+.+..+|+..++++|+..++.+ ....++..+..+|...|+|++++.+..+-+++
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~-------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE-------DRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999999988754 34567778888999999999999887665554
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=18 Score=41.81 Aligned_cols=86 Identities=20% Similarity=0.145 Sum_probs=54.8
Q ss_pred cCCHHHHHHHHHHHHhhccCCchhhHHHHH---HHHHHHHHh----cC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 734 SGRYTEAVEHYTVALSTNIESRPFAAICFC---NRAAALQAL----GQ---IADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 734 ~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~---~lA~~y~~l----g~---~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
.|+.++|+..+-..-.+.| .-..+.. .+-.++... |. --+-+.+..+.+-.+..++.++..-+.-.
T Consensus 711 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (831)
T PRK15180 711 EGRLDEALSVLISLKRIEP----DVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNA 786 (831)
T ss_pred cccHHHHHHHHHhhhccCc----cHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhH
Confidence 4678888887766655663 3222221 222222111 11 12344555666677888888888888888
Q ss_pred HHhcCHHHHHHHHHHHHHHh
Q 002199 804 EMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 804 ~~lg~~eeAi~~~ekAL~l~ 823 (954)
+.+.+|.+|++++++.-+++
T Consensus 787 ~~~~~~~~~~~~~~~~~~~~ 806 (831)
T PRK15180 787 MHLRDYTQALQYWQRLEKVN 806 (831)
T ss_pred hHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999988773
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.63 Score=52.43 Aligned_cols=97 Identities=14% Similarity=0.210 Sum_probs=77.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccC-------Cc-------hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 002199 726 SAGNEAFKSGRYTEAVEHYTVALSTNIE-------SR-------PFAAICFCNRAAALQALGQIADAIADCSLAMALDEN 791 (954)
Q Consensus 726 ~lG~~~~~~g~~eeAi~~y~kAL~l~~~-------~~-------p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~ 791 (954)
.-|..++++++|..|+--|..||++... .. .....+-..|..||+.+++.+.|+....+.|.++|.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 3456667778888888777777776321 00 122345567899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 792 YTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 792 ~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
+..-++..|.++..+.+|.+|...+--+.=+
T Consensus 261 ~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999877665544
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.18 Score=60.96 Aligned_cols=105 Identities=25% Similarity=0.338 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQAL--GQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~l--g~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
.....|+.+++.++|..|..-|..++.+-|..+...+.+..+.+.||+.+ ++|..++..+.-|+...|....+++.++
T Consensus 55 ~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~ 134 (748)
T KOG4151|consen 55 ELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRA 134 (748)
T ss_pred HHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhh
Confidence 34457899999999999999999999999888889999999999999876 5999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 801 ALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 801 ~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
.+|..+++++-|++++.-...+.|.+.
T Consensus 135 ~~y~al~k~d~a~rdl~i~~~~~p~~~ 161 (748)
T KOG4151|consen 135 RKYEALNKLDLAVRDLRIVEKMDPSNV 161 (748)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 999999999999999877777766653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.33 E-value=3.9 Score=48.58 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQG 474 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kA 474 (954)
-|..+|+..+..=+++-|.+.|.+.
T Consensus 587 DW~~LA~~ALeAL~f~~ARkAY~rV 611 (1081)
T KOG1538|consen 587 DWRELAMEALEALDFETARKAYIRV 611 (1081)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 4777777778778888888888765
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.21 E-value=28 Score=43.13 Aligned_cols=127 Identities=9% Similarity=-0.066 Sum_probs=69.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 002199 674 SKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIE 753 (954)
Q Consensus 674 g~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~ 753 (954)
+...+...+.+.|...+.+......-..... ......+|..+.......+|..++..+....
T Consensus 248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~----------------~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-- 309 (644)
T PRK11619 248 AFASVARQDAENARLMIPSLVRAQKLNEDQR----------------QELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-- 309 (644)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHH----------------HHHHHHHHHHHHhccCCHHHHHHHHhccccc--
Confidence 3344456677888888876544333222110 1112223333333323566777776654331
Q ss_pred CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 754 SRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVS 821 (954)
Q Consensus 754 ~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~ 821 (954)
.....+..+..+.+..++++.+...+...-..........|.+|+++..+|+.++|...|+++..
T Consensus 310 ---~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 310 ---QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred ---CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 12222333333444677777766666654332334567778888888888888888888887643
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.20 E-value=1.4 Score=42.41 Aligned_cols=80 Identities=10% Similarity=0.079 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002199 722 LHHKSAGNEAFKSG---RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSR 798 (954)
Q Consensus 722 ~~~~~lG~~~~~~g---~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~ 798 (954)
...++++.++.... +..+-|.+++..+.. ..+...-.+.+.||..++++++|+.|+.++...|+.+|++.++.-.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 34556777776554 456678888888862 2334567788889999999999999999999999999999887655
Q ss_pred HHHHH
Q 002199 799 RAALH 803 (954)
Q Consensus 799 lA~ly 803 (954)
.-.+.
T Consensus 111 k~~ie 115 (149)
T KOG3364|consen 111 KETIE 115 (149)
T ss_pred HHHHH
Confidence 44443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.14 E-value=3.4 Score=41.63 Aligned_cols=125 Identities=16% Similarity=0.048 Sum_probs=91.4
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhh
Q 002199 679 CIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFA 758 (954)
Q Consensus 679 ~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~ 758 (954)
..+..++|+..|..+....-...+ +.+....|.+..+.|+...|+..|.++-.-.+...+..
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~Yp------------------vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~r 131 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYP------------------VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGR 131 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcch------------------HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhh
Confidence 456677888888776554332222 33455678889999999999999999887765444444
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 759 AICFCNRAAALQALGQIADAIADCSLAM-ALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVS 821 (954)
Q Consensus 759 a~~~~~lA~~y~~lg~~eeAi~~~ekAL-~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~ 821 (954)
-.+...-|.++...|-|++-....+..- .-+|--..+.-.||..-++.|++..|...|.++..
T Consensus 132 d~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 132 DLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5666677788888899988766555421 22444567778899999999999999999998875
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.10 E-value=10 Score=41.19 Aligned_cols=223 Identities=13% Similarity=0.064 Sum_probs=127.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Q 002199 530 MRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEAL 609 (954)
Q Consensus 530 ~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL 609 (954)
+.+|+-....+++++|+..|.++|...-. .+... ..++-...+++...|...|++....+.+...+.++
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s--~dek~---------~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m 75 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVS--KDEKT---------LNEQEATVLELFKLYVSKGDYCSLGDTITSSREAM 75 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCC--hhhhh---------hhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHH
Confidence 56777788889999999999999875221 11111 11123345667777888888776655555555555
Q ss_pred hcC--CCCHHHHHHHHHHH-HHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHH
Q 002199 610 SIS--SCSEKLLEMKADAL-YMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVA 686 (954)
Q Consensus 610 ~~~--P~~~~~~~~lA~~~-~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeA 686 (954)
... |....+...+-+-+ .....++.-+..+...++.....- ..+.+...-..+..+|+..|.|.+|
T Consensus 76 ~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEk-----------r~fLr~~Le~Kli~l~y~~~~Ysda 144 (421)
T COG5159 76 EDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREK-----------RKFLRLELECKLIYLLYKTGKYSDA 144 (421)
T ss_pred HHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhcccHHHH
Confidence 432 22222222221111 122345666666666665543221 1122222334567889999999999
Q ss_pred HHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-CCch--hhHHHHH
Q 002199 687 LDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI-ESRP--FAAICFC 763 (954)
Q Consensus 687 l~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~-~~~p--~~a~~~~ 763 (954)
+......+.- +..+...+..+..+.....+|....+..++...+..|-.... ...| ..+.+-.
T Consensus 145 lalIn~ll~E--------------lKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL 210 (421)
T COG5159 145 LALINPLLHE--------------LKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDL 210 (421)
T ss_pred HHHHHHHHHH--------------HHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHH
Confidence 9988776542 222222233344455566777777777777777766644321 1112 2233334
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 764 NRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 764 ~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
.-|..+..-.+|.-|..+|-.+++-
T Consensus 211 ~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 211 LSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred hccceeeccccchhHHHHHHHHHhc
Confidence 4466666777888888888887753
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.91 E-value=26 Score=41.91 Aligned_cols=319 Identities=14% Similarity=0.030 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH-HHHHHHcCCHH
Q 002199 465 TEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRA-AKCHLVLGEIE 543 (954)
Q Consensus 465 ~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~L-A~iy~~lG~~e 543 (954)
+.+...|...|...|-.. ..|...|..-.++|..+.+++.|++++.--|.....|... +.+-...|+.+
T Consensus 62 ~~~r~~y~~fL~kyPl~~----------gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~ 131 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCY----------GYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPE 131 (577)
T ss_pred HHHHHHHHHHHhhCccHH----------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHH
Confidence 667778888898889876 7889999999999999999999999999999777666654 33333456777
Q ss_pred HHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002199 544 NAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKA 623 (954)
Q Consensus 544 eAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA 623 (954)
.-...|++|+......-.... + +..++ .....++.+. .....|++.+++.-.....++..=
T Consensus 132 ~lr~~fe~A~~~vG~dF~S~~-l------------Wdkyi---e~en~qks~k---~v~~iyeRileiP~~~~~~~f~~f 192 (577)
T KOG1258|consen 132 TLRDLFERAKSYVGLDFLSDP-L------------WDKYI---EFENGQKSWK---RVANIYERILEIPLHQLNRHFDRF 192 (577)
T ss_pred HHHHHHHHHHHhcccchhccH-H------------HHHHH---HHHhccccHH---HHHHHHHHHHhhhhhHhHHHHHHH
Confidence 777778888775432111000 0 00011 0112233333 333444444443322222222211
Q ss_pred HHHHH------ccCHHHHHHHHHHhchh-------hhhhh-----hhhhhccCcchhhHHHHHHHH-HHHHHHHHcCCHH
Q 002199 624 DALYM------LRKYEEAIQLCEHTLPV-------AEKNF-----ASVLADNGSVTYSLARLWRWR-LISKSYFCIGKLE 684 (954)
Q Consensus 624 ~~~~~------lg~~eeAi~~~ekaL~l-------~p~~~-----~~~~~~~~~~~~~~~~l~a~~-~Lg~~y~~lG~~e 684 (954)
.-++. +...+++++.-...... .|... ................+.... ..-.+|...-...
T Consensus 193 ~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~ 272 (577)
T KOG1258|consen 193 KQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEE 272 (577)
T ss_pred HHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHH
Confidence 11111 11222222222111110 00000 000000000000110110111 1112333333444
Q ss_pred HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHH
Q 002199 685 VALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCN 764 (954)
Q Consensus 685 eAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~ 764 (954)
+.+..++..+..--.+.... ....+..|......-...|+++...-.|++++--. ......|..
T Consensus 273 ~kr~~fE~~IkrpYfhvkpl------------~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c----A~Y~efWik 336 (577)
T KOG1258|consen 273 EKRWGFEEGIKRPYFHVKPL------------DQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC----ALYDEFWIK 336 (577)
T ss_pred HHHHhhhhhccccccccCcc------------cHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH----hhhHHHHHH
Confidence 44444544443210000000 11223345555666678899999999999998766 677889999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 765 RAAALQALGQIADAIADCSLAMALD-ENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 765 lA~~y~~lg~~eeAi~~~ekAL~ld-P~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
.+.-....|+.+-|-..+..+.++. |..+..++.-+.+-...|++..|...|++..+-.|...+
T Consensus 337 y~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~ 401 (577)
T KOG1258|consen 337 YARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVE 401 (577)
T ss_pred HHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhh
Confidence 9999999999999998888888764 777888888899999999999999999999988776544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.72 E-value=8.6 Score=45.84 Aligned_cols=78 Identities=9% Similarity=-0.039 Sum_probs=40.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Q 002199 726 SAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY-TKAVSRRAALHE 804 (954)
Q Consensus 726 ~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~-~~al~~lA~ly~ 804 (954)
..+..+.....+.-|-+.|.+.-.+. .+-.++...++|.+|....++ .|.. +..|+..|+-+.
T Consensus 752 ~~a~ylk~l~~~gLAaeIF~k~gD~k------------siVqlHve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 752 LCATYLKKLDSPGLAAEIFLKMGDLK------------SLVQLHVETQRWDEAFALAEK----HPEFKDDVYMPYAQWLA 815 (1081)
T ss_pred HHHHHHhhccccchHHHHHHHhccHH------------HHhhheeecccchHhHhhhhh----CccccccccchHHHHhh
Confidence 34444455555555555554432211 122445556677777666554 2332 234555566666
Q ss_pred HhcCHHHHHHHHHHH
Q 002199 805 MIRDYTQAASDLQRL 819 (954)
Q Consensus 805 ~lg~~eeAi~~~ekA 819 (954)
...++++|.+.|.+|
T Consensus 816 E~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhhhHHHHHHHHHHh
Confidence 666666666666444
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.55 E-value=25 Score=41.19 Aligned_cols=223 Identities=10% Similarity=0.025 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
.++..+-.++-....+.-....|.+.|++.. +-.+++.+++||... ..++=...+++..+.+=++....+.++...+.
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk 144 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK 144 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 4444444455555556666678888888764 456899999999988 66777778888877665443322222222222
Q ss_pred HHHHHhHHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKL-LEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFA 651 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~l-l~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~ 651 (954)
. +...+..++..+... +..++.. ..-+.+.+....-|++. +.-+....+.-.......
T Consensus 145 i-k~sk~a~~f~Ka~yrfI~~~q~~---~i~evWeKL~~~i~dD~----------------D~fl~l~~kiqt~lg~~~- 203 (711)
T COG1747 145 I-KKSKAAEFFGKALYRFIPRRQNA---AIKEVWEKLPELIGDDK----------------DFFLRLQKKIQTKLGEGR- 203 (711)
T ss_pred h-chhhHHHHHHHHHHHhcchhhhh---hHHHHHHHHHHhccccH----------------HHHHHHHHHHHHhhccch-
Confidence 1 111112222221111 1111111 01112222222222222 111111111111110000
Q ss_pred hhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 652 SVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEA 731 (954)
Q Consensus 652 ~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~ 731 (954)
.. -++..+-.-|....++.+|+..+.-.++++..+......+++.+..-++....+..|....++-
T Consensus 204 -------------~~-Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~ 269 (711)
T COG1747 204 -------------GS-VLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNIS 269 (711)
T ss_pred -------------HH-HHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchh
Confidence 00 0112223345567889999999999999888777766666776666666667777777777777
Q ss_pred HHcCCHHHHHHHHHHHHhhcc
Q 002199 732 FKSGRYTEAVEHYTVALSTNI 752 (954)
Q Consensus 732 ~~~g~~eeAi~~y~kAL~l~~ 752 (954)
..-.++.+|+.-|++.+..+.
T Consensus 270 ~~~rnf~~~l~dFek~m~f~e 290 (711)
T COG1747 270 QSGRNFFEALNDFEKLMHFDE 290 (711)
T ss_pred hccccHHHHHHHHHHHheecc
Confidence 778899999999999887753
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.42 E-value=26 Score=40.64 Aligned_cols=57 Identities=9% Similarity=0.050 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSL 784 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ek 784 (954)
....-|.-++.+|+|.+++-+-.=..++. | .+.+|..+|.|++...+|.+|..++..
T Consensus 464 n~LaDAEyLysqgey~kc~~ys~WL~~ia----P-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 464 NFLADAEYLYSQGEYHKCYLYSSWLTKIA----P-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhC----C-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 34445777899999999998877777787 5 788999999999999999999999875
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.45 Score=57.73 Aligned_cols=110 Identities=17% Similarity=0.236 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISL--GRMREALEDCMMAATVD 522 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~l--g~~eeAl~~~~kALel~ 522 (954)
...+..+...|+.+++.++|..|.--|..++.+.|.+. ...+.+..+++.||+.+ ++|..++..+.-|+...
T Consensus 50 l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~------~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~ 123 (748)
T KOG4151|consen 50 LSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDH------HVVATLRSNQASCYMQLGLGEYPKAIPECELALESQ 123 (748)
T ss_pred HHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccc------hhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhcc
Confidence 34566778899999999999999999999999999653 34567888999998865 68999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
|...++++.++.+|..+++++-|++...-.....|.+.
T Consensus 124 p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~ 161 (748)
T KOG4151|consen 124 PRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNV 161 (748)
T ss_pred chHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999999999888888888763
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.12 E-value=0.19 Score=52.44 Aligned_cols=60 Identities=18% Similarity=0.188 Sum_probs=56.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 500 ATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 500 ~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
......++.+.|.+.|.+++++-|.+...|+++|....+.|+++.|...|++.|+++|.+
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345677899999999999999999999999999999999999999999999999999975
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.87 E-value=2.1 Score=42.77 Aligned_cols=85 Identities=12% Similarity=-0.125 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002199 722 LHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAA 801 (954)
Q Consensus 722 ~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ 801 (954)
..+..........++.+++...+...--+. |..+.+-..-|.++...|+|.+|+..++.+.+-.|..+.+--.++.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLR----P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLR----PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 345556667778889999999988877777 7888888889999999999999999999998888999988888999
Q ss_pred HHHHhcCHH
Q 002199 802 LHEMIRDYT 810 (954)
Q Consensus 802 ly~~lg~~e 810 (954)
|+..+++..
T Consensus 87 CL~~~~D~~ 95 (160)
T PF09613_consen 87 CLYALGDPS 95 (160)
T ss_pred HHHHcCChH
Confidence 999888853
|
|
| >KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.061 Score=62.87 Aligned_cols=44 Identities=34% Similarity=0.420 Sum_probs=33.6
Q ss_pred hccccCCCHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHC
Q 002199 872 LGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKES 915 (954)
Q Consensus 872 Lgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l 915 (954)
+.+..-.+...|||+|||++|..||||....+....-+-|++.+
T Consensus 394 VsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekv 437 (453)
T KOG0431|consen 394 VSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKV 437 (453)
T ss_pred CchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHH
Confidence 34444568889999999999999999998877665555555555
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=91.84 E-value=1.3 Score=39.95 Aligned_cols=65 Identities=23% Similarity=0.224 Sum_probs=38.7
Q ss_pred HHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCH
Q 002199 741 VEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY--TKAVSRRAALHEMIRDY 809 (954)
Q Consensus 741 i~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~--~~al~~lA~ly~~lg~~ 809 (954)
+..+++++..+ |.+..+.+.+|..+...|++++|++.+-.++..++++ ..+.-.+-.++..+|.-
T Consensus 8 ~~al~~~~a~~----P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 8 IAALEAALAAN----PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHS----TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHcC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 45566666666 6666777777777777777777777777777776654 34444444444444443
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.21 Score=52.06 Aligned_cols=58 Identities=24% Similarity=0.209 Sum_probs=34.9
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 002199 731 AFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY 792 (954)
Q Consensus 731 ~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~ 792 (954)
....++.+.|.+.|.+|+.+. |.....|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~la----p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELA----PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcC----chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 444556666666666666665 5555666666666666666666666666666666554
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.44 E-value=6.5 Score=46.44 Aligned_cols=95 Identities=21% Similarity=0.114 Sum_probs=58.7
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhh---ccCcc--hhhHHHH--HHHHHHHHHHHHc
Q 002199 608 ALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLA---DNGSV--TYSLARL--WRWRLISKSYFCI 680 (954)
Q Consensus 608 aL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~---~~~~~--~~~~~~l--~a~~~Lg~~y~~l 680 (954)
.|...|.+...++.+|.+...+|+.+-|..+.+++|=.-......... ..+.. ....-+. .+++..-..+...
T Consensus 276 lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~R 355 (665)
T KOG2422|consen 276 LLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQR 355 (665)
T ss_pred eeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhc
Confidence 344579999999999999999999999999888887332211100000 00000 1111111 1222223455678
Q ss_pred CCHHHHHHHHHHHHhhCCCCcc
Q 002199 681 GKLEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~p~~~~ 702 (954)
|-+..|+++.+-++.++|....
T Consensus 356 GC~rTA~E~cKlllsLdp~eDP 377 (665)
T KOG2422|consen 356 GCWRTALEWCKLLLSLDPSEDP 377 (665)
T ss_pred CChHHHHHHHHHHhhcCCcCCc
Confidence 8899999999999999988333
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=91.24 E-value=26 Score=38.25 Aligned_cols=29 Identities=21% Similarity=0.142 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHh
Q 002199 614 CSEKLLEMKADALYMLRKYEEAIQLCEHT 642 (954)
Q Consensus 614 ~~~~~~~~lA~~~~~lg~~eeAi~~~eka 642 (954)
.++.++..+|..|+..+++.+|..++-..
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 57889999999999999999888776443
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.16 E-value=29 Score=38.73 Aligned_cols=253 Identities=16% Similarity=0.094 Sum_probs=152.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Q 002199 530 MRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEAL 609 (954)
Q Consensus 530 ~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL 609 (954)
+.+++......++++++..|.+++........+.... -..-...++++..+...|++.+...-+...+..+
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i---------~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~ 78 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARI---------KEKEQSILELGDLLAKEGDAEELRDLITSLRPFL 78 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHH---------HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 5667777788889999999999988411110111000 0112345677788888888887666666666655
Q ss_pred hcCCCC--HHHHHHHHHHHH-HccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHH
Q 002199 610 SISSCS--EKLLEMKADALY-MLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVA 686 (954)
Q Consensus 610 ~~~P~~--~~~~~~lA~~~~-~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeA 686 (954)
..-+.. ..+...+-+... .-+....-+.++..+++.....-. .+.+.-.-..+..+|+..++|.+|
T Consensus 79 ~~v~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekR-----------tFLRq~Learli~Ly~d~~~YteA 147 (411)
T KOG1463|consen 79 SSVSKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKR-----------TFLRQSLEARLIRLYNDTKRYTEA 147 (411)
T ss_pred HHhhhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHHhhHHHHHH
Confidence 543332 222222222222 234455667777777766543311 222222334577889999999999
Q ss_pred HHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-C--CchhhHHHHH
Q 002199 687 LDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI-E--SRPFAAICFC 763 (954)
Q Consensus 687 l~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~-~--~~p~~a~~~~ 763 (954)
+......++- +..+......+..+......|+...+..+|...+..|-.... - .+...+.+-.
T Consensus 148 laL~~~L~rE--------------lKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDL 213 (411)
T KOG1463|consen 148 LALINDLLRE--------------LKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDL 213 (411)
T ss_pred HHHHHHHHHH--------------HHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHH
Confidence 9988776542 222333333344555667888999999999988887754321 0 1123445555
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHH---HHHHHHHHHHHhcCHHHHHHHH
Q 002199 764 NRAAALQALGQIADAIADCSLAMALD---ENYTK---AVSRRAALHEMIRDYTQAASDL 816 (954)
Q Consensus 764 ~lA~~y~~lg~~eeAi~~~ekAL~ld---P~~~~---al~~lA~ly~~lg~~eeAi~~~ 816 (954)
.-|.++..-.+|.-|..+|-+|++-. .+... ++-.+-.+-.+++..++-...+
T Consensus 214 qSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~ll 272 (411)
T KOG1463|consen 214 QSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALL 272 (411)
T ss_pred hccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 66788888899999999999998642 12233 4444555666777777655544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.39 Score=35.72 Aligned_cols=29 Identities=31% Similarity=0.217 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
.++.++|.+|..+|++++|+..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45566666666666666666666666554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.89 E-value=3.2 Score=40.87 Aligned_cols=86 Identities=13% Similarity=-0.143 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~ 527 (954)
...+...........+.+++..++...--+.|+.. .+-..-|.+++..|+|.+|+..++...+-.+..+.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~----------e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~ 79 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLK----------ELDMFDGWLLIARGNYDEAARILRELLSSAGAPPY 79 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcc----------ccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchH
Confidence 34555666666778899999998888888889887 77788888999999999999999998888888888
Q ss_pred HHHHHHHHHHHcCCHH
Q 002199 528 VYMRAAKCHLVLGEIE 543 (954)
Q Consensus 528 a~~~LA~iy~~lG~~e 543 (954)
+.-.++.|+..+|+..
T Consensus 80 ~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 80 GKALLALCLNAKGDAE 95 (153)
T ss_pred HHHHHHHHHHhcCChH
Confidence 8888889998888865
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=90.84 E-value=1.5 Score=42.29 Aligned_cols=74 Identities=11% Similarity=0.021 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 449 EMWRLRGNQAYKNN---NLTEAEDFYTQGIN-SVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 449 e~l~~~G~~~~~~g---~y~eAi~~y~kAL~-~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
+..+.++..+.... +..+-|.+++..++ ..|... -.+++.+|..++++++|+.++.+++..|+..|+
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~r---------Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERR---------RECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccc---------hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 44566666666544 45678888888886 445443 378888999999999999999999999999998
Q ss_pred cHHHHHH
Q 002199 525 FLKVYMR 531 (954)
Q Consensus 525 ~~~a~~~ 531 (954)
+..+...
T Consensus 104 n~Qa~~L 110 (149)
T KOG3364|consen 104 NRQALEL 110 (149)
T ss_pred cHHHHHH
Confidence 8776544
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.72 E-value=45 Score=40.17 Aligned_cols=101 Identities=16% Similarity=0.100 Sum_probs=87.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhccCC--chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002199 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIES--RPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAAL 802 (954)
Q Consensus 725 ~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~--~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~l 802 (954)
-+.|.-+++..+|..++++|...+..-|.+ ....+....+++.||+.+.+.+.|.++++.|-+.+|.++-..+.+-.+
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~ 437 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS 437 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 355778899999999999999998875422 134478899999999999999999999999999999999888888899
Q ss_pred HHHhcCHHHHHHHHHHHHHHhhh
Q 002199 803 HEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 803 y~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
....+.-++|+...........+
T Consensus 438 ~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 438 FLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HHHhcchHHHHHHHHHHHhhhcc
Confidence 99999999999999988877554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.56 Score=34.86 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 795 AVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
++.++|.+|..+|++++|+.++++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 3445555555555555555555555554
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.80 E-value=5.1 Score=47.45 Aligned_cols=98 Identities=22% Similarity=0.135 Sum_probs=77.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHH-HHHHHhCCCCHHHHHHH------
Q 002199 727 AGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADC-SLAMALDENYTKAVSRR------ 799 (954)
Q Consensus 727 lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~-ekAL~ldP~~~~al~~l------ 799 (954)
+...+...+....|+..+..++..+ |..+.++.++|.++...|....++..+ +.+....|.+...+..+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 148 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVN----PENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQL 148 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcC----cccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHH
Confidence 4555667778888888888999888 778888889988888777665555544 44888889888776666
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 800 AALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 800 A~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
+.....+++..++...+++++.+.|+..+
T Consensus 149 ~~~~~~l~~~~~~~~~l~~~~d~~p~~~~ 177 (620)
T COG3914 149 GRYLKLLGRTAEAELALERAVDLLPKYPR 177 (620)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhhhhhhh
Confidence 88888888899999999999999887644
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=89.78 E-value=1.5 Score=39.87 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=41.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 456 NQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 456 ~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
....+.|+|..|++.+.+.+.......... .......++.++|.++...|++++|+..++.|+.+
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~-~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSS-SNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccch-hhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345788999999999999988765543100 00123455666666666666666666666666655
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=89.54 E-value=1.6 Score=39.56 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 795 AVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
+++.+|.++...|++++|+..++.++++...
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555443
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=89.51 E-value=76 Score=40.93 Aligned_cols=322 Identities=12% Similarity=-0.013 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 446 ETCEMWRLRGNQAYKN----N---NLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMA 518 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~----g---~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kA 518 (954)
+--++.+..|...+.+ | .|.+|+..|++.- -.|..+ .-|...|.+|..+|+|++-+++|..|
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (932)
T PRK13184 510 EGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAP----------LEYLGKALVYQRLGEYNEEIKSLLLA 578 (932)
T ss_pred cchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCc----------hHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 3345666667666543 2 5777887777643 345554 78999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhH--------------
Q 002199 519 ATVDPNFLKVYMRAAKCHLVL-----GEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKV-------------- 579 (954)
Q Consensus 519 Lel~P~~~~a~~~LA~iy~~l-----G~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~-------------- 579 (954)
++..|..+..-...-.+-+++ .+...|+...--++..-|.....+... .....+..-.+.
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (932)
T PRK13184 579 LKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEE-KFLEILYHKQQATLFCQLDKTPLQFR 657 (932)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHH-HHHHHHHhhccCCceeeccCchhhhh
Confidence 999998865544333333322 234456666677777777654332111 111111111110
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchh-----hhhhhhhhh
Q 002199 580 TEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPV-----AEKNFASVL 654 (954)
Q Consensus 580 ~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l-----~p~~~~~~~ 654 (954)
...+.+-..+.. |..- --.+.++++....|. .++...-.+...+|.++-+.+.....-.. .|.+...
T Consensus 658 ~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 729 (932)
T PRK13184 658 SSKMELFLSFWS-GFTP---FLPELFQRAWDLRDY--RALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVE-- 729 (932)
T ss_pred hhhHHHHHHHHh-cCch---hhHHHHHHHhhcccH--HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHh--
Confidence 000111111111 1111 123455666665544 55555556677888887655444332211 1111110
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002199 655 ADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS 734 (954)
Q Consensus 655 ~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~ 734 (954)
.....+..|..--.++.....++++.+.+... +|.... .++...+.-.+..
T Consensus 730 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~ 780 (932)
T PRK13184 730 -------QKVEELMFFLKGLEALSNKEDYEKAFKHLDNT---DPTLIL-------------------YAFDLFAIQALLD 780 (932)
T ss_pred -------hhHHHHHHHHHHHHHHHccccHHHHHhhhhhC---CHHHHH-------------------HHHHHHHHHHHHh
Confidence 00111112222233445566778877655442 211100 0111112222222
Q ss_pred CCH---HHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHhcCH
Q 002199 735 GRY---TEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAM--ALDENYTKAVSRRAALHEMIRDY 809 (954)
Q Consensus 735 g~~---eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL--~ldP~~~~al~~lA~ly~~lg~~ 809 (954)
++. -.+++.+.+...-. .....+....-.+|+-..++.+|-+.+..-- .+..+...++...|.-+...++-
T Consensus 781 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (932)
T PRK13184 781 EEGESIIQLLQLIYDYVSEE----ERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDR 856 (932)
T ss_pred ccchHHHHHHHHHHhccCCh----hhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCch
Confidence 222 22333322221111 2234455556677888888888888774321 12245567777788888888888
Q ss_pred HHHHHHHHHHH
Q 002199 810 TQAASDLQRLV 820 (954)
Q Consensus 810 eeAi~~~ekAL 820 (954)
+-|...|....
T Consensus 857 ~~~~~~~~~~~ 867 (932)
T PRK13184 857 EAAKAHFSGCR 867 (932)
T ss_pred hHHHHHHhhcc
Confidence 88888887776
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.38 E-value=2.9 Score=45.23 Aligned_cols=72 Identities=17% Similarity=0.018 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002199 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYM 530 (954)
Q Consensus 451 l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~ 530 (954)
+..+=..+.+.++++.|..+-++.|.++|.++ .-+.-+|.+|.++|.+.-|+++++..++..|+.+.+-.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp----------~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDP----------YEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCCh----------hhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 33344455566666666666666666666665 55566666666666666666666666666666655444
Q ss_pred HH
Q 002199 531 RA 532 (954)
Q Consensus 531 ~L 532 (954)
..
T Consensus 254 ir 255 (269)
T COG2912 254 IR 255 (269)
T ss_pred HH
Confidence 33
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.29 E-value=48 Score=38.37 Aligned_cols=197 Identities=16% Similarity=0.045 Sum_probs=123.8
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHH
Q 002199 605 INEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLE 684 (954)
Q Consensus 605 l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~e 684 (954)
+.+++..-|..+++|+.....+...++-+.|+...++.+...|.- ...++..|-...+-+
T Consensus 291 ~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL--------------------~~~lse~yel~nd~e 350 (660)
T COG5107 291 HNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSL--------------------TMFLSEYYELVNDEE 350 (660)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCch--------------------heeHHHHHhhcccHH
Confidence 456666677778888888888888899999999999988888752 224566666666666
Q ss_pred HHHHHHHHHHhh--------CCCCcchh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 002199 685 VALDLLQKLEQV--------GSISDRYG---SEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIE 753 (954)
Q Consensus 685 eAl~~l~kal~l--------~p~~~~~~---~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~ 753 (954)
.-..+|+++.+. +.+..... .+....+ .+....+...++.-.-+.-.+..-.+.|...|.++-+.-.
T Consensus 351 ~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~El-l~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~- 428 (660)
T COG5107 351 AVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKEL-LLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI- 428 (660)
T ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHH-HHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-
Confidence 666666665431 10000000 0000000 0111112222333344444555667777788877755431
Q ss_pred CchhhHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 754 SRPFAAICFCNRA-AALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 754 ~~p~~a~~~~~lA-~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
....+|..-| .-|...|++.-|...|+..+...|+.+......-..++..++-+.|...|++++....+.
T Consensus 429 ---~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~ 499 (660)
T COG5107 429 ---VGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKT 499 (660)
T ss_pred ---CCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHh
Confidence 1222222222 335678999999999999999999988777777777888999999999999888775544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.98 E-value=5.8 Score=46.71 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVA 747 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kA 747 (954)
.|..+|...+.+|+++-|.++|.++
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 5555666666666666666666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.42 E-value=18 Score=43.01 Aligned_cols=106 Identities=15% Similarity=-0.068 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhc
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMM-AATV 521 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~k-ALel 521 (954)
..|+..-+.. +...+...+....|+.....++..+|.+. .++.++|.+....|....++..+.. +...
T Consensus 63 ~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~L~~ale~~~~~~~~~~~~~~~a~~~ 131 (620)
T COG3914 63 VNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENC----------PAVQNLAAALELDGLQFLALADISEIAEWL 131 (620)
T ss_pred CCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccc----------hHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 3445444444 67777788899899999999999999997 8999999999888887777666555 8889
Q ss_pred CCCcHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 522 DPNFLKVYMRA------AKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 522 ~P~~~~a~~~L------A~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
.|.+......+ ++.+..+|+..++....+++..+.|.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 132 SPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred CcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence 99887766555 888889999999999999999998876
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.34 E-value=43 Score=36.56 Aligned_cols=220 Identities=10% Similarity=-0.036 Sum_probs=119.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---C--CCcH
Q 002199 452 RLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV---D--PNFL 526 (954)
Q Consensus 452 ~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel---~--P~~~ 526 (954)
.++++...+.+++++|+..|.+.|...-... .......-....+++..|...|++..--+.....-+. - |...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~d--ek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~ 84 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKD--EKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKIT 84 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChh--hhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHH
Confidence 4678888999999999999999997622111 0011223467788999999999876433333222111 1 1111
Q ss_pred HHHHHHHHH-HHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 002199 527 KVYMRAAKC-HLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERI 605 (954)
Q Consensus 527 ~a~~~LA~i-y~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l 605 (954)
++...|-.- -.....++.-+.....+++.. ...-....+..--..++..++..+.|.++..-|.-+
T Consensus 85 KiirtLiekf~~~~dsl~dqi~v~~~~iewA-------------~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 85 KIIRTLIEKFPYSSDSLEDQIKVLTALIEWA-------------DREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 111111100 011122333333333333321 111112222333455677788999999544333333
Q ss_pred HHHHhc---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC
Q 002199 606 NEALSI---SSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGK 682 (954)
Q Consensus 606 ~kaL~~---~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~ 682 (954)
..-++. .|.-..++..-..+|....+..++...+..|-.....-+- ++......-+.-|..+..-.+
T Consensus 152 l~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YC----------Ppqlqa~lDL~sGIlhcdd~d 221 (421)
T COG5159 152 LHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYC----------PPQLQAQLDLLSGILHCDDRD 221 (421)
T ss_pred HHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCC----------CHHHHHHHHHhccceeecccc
Confidence 332322 2455678888889999999998888777666443321110 111111112233666677788
Q ss_pred HHHHHHHHHHHHhh
Q 002199 683 LEVALDLLQKLEQV 696 (954)
Q Consensus 683 ~eeAl~~l~kal~l 696 (954)
|..|..+|-++++-
T Consensus 222 yktA~SYF~Ea~Eg 235 (421)
T COG5159 222 YKTASSYFIEALEG 235 (421)
T ss_pred chhHHHHHHHHHhc
Confidence 99999999988874
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.32 E-value=18 Score=37.69 Aligned_cols=75 Identities=16% Similarity=0.066 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCHHH
Q 002199 736 RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDEN----YTKAVSRRAALHEMIRDYTQ 811 (954)
Q Consensus 736 ~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~----~~~al~~lA~ly~~lg~~ee 811 (954)
.-++|...|-++-.. ..-..+...+.+|..|. ..+.++|+..+.++|++.+. +++.+..|+.+|..+++++.
T Consensus 121 ~d~~A~~~fL~~E~~---~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 121 GDQEALRRFLQLEGT---PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CcHHHHHHHHHHcCC---CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 445666666544322 22456788888887666 77899999999999998543 58999999999999999999
Q ss_pred HHH
Q 002199 812 AAS 814 (954)
Q Consensus 812 Ai~ 814 (954)
|.-
T Consensus 197 AYi 199 (203)
T PF11207_consen 197 AYI 199 (203)
T ss_pred hhh
Confidence 863
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.07 E-value=1.9 Score=46.59 Aligned_cols=71 Identities=18% Similarity=0.096 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 758 AAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 758 ~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
......++=.+|...++++.|....++.+.++|.++.-+.-+|.+|.++|.+.-|+.+++..++..|++..
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 44455666678889999999999999999999999999999999999999999999999999999776544
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.02 E-value=17 Score=43.19 Aligned_cols=177 Identities=14% Similarity=0.082 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHHhc------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----chhhhhhHHHHHH
Q 002199 506 GRMREALEDCMMAATV------------DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS-----AAAVCLDRRITIE 568 (954)
Q Consensus 506 g~~eeAl~~~~kALel------------~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l-----~P~~~~~~~~~~e 568 (954)
.-|++|...|.-|+.. .|-++..++.++.+...+|+.+-|....+++|-. .|..........-
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 4466777777777664 3667889999999999999999999998888752 1211100000000
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH-HccCHHHHHHHHHHhchhh
Q 002199 569 AADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSC-SEKLLEMKADALY-MLRKYEEAIQLCEHTLPVA 646 (954)
Q Consensus 569 a~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~-~~~~~~~lA~~~~-~lg~~eeAi~~~ekaL~l~ 646 (954)
-......-.-....+.....+-..|-+. .|++.+.-.+.++|. +|.....+-.+|. +..+|.=-|+.++..-..+
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~r---TA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n 408 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWR---TALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMN 408 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChH---HHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 0000000000122223333344566666 899999999999998 7665555555544 3455555555554431111
Q ss_pred hhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC
Q 002199 647 EKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGK---LEVALDLLQKLEQVGS 698 (954)
Q Consensus 647 p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~---~eeAl~~l~kal~l~p 698 (954)
. ..... ... .-..++..|..... -+.|+..+.+|+.+.|
T Consensus 409 ~--l~~~P------N~~-----yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 409 K--LSQLP------NFG-----YSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred c--HhhcC------Cch-----HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 0 00000 000 11234556665555 5678899999998876
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.78 E-value=4.5 Score=44.31 Aligned_cols=80 Identities=20% Similarity=0.100 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 002199 737 YTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDL 816 (954)
Q Consensus 737 ~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ 816 (954)
|..=+...+++++ .....++..++..+...++++.++..+++.+.++|-+..+|..+-.+|+..|+...|+..|
T Consensus 137 f~~WV~~~R~~l~------e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y 210 (280)
T COG3629 137 FDEWVLEQRRALE------ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAY 210 (280)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHH
Confidence 4444444444444 3466788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 002199 817 QRLVSI 822 (954)
Q Consensus 817 ekAL~l 822 (954)
+++-++
T Consensus 211 ~~l~~~ 216 (280)
T COG3629 211 RQLKKT 216 (280)
T ss_pred HHHHHH
Confidence 999886
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=87.56 E-value=4.7 Score=35.24 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
....|.-++.+.+..+|+..++++++..++ .+....++-.+..+|...|+|.+++.+.-.=+++
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITD-REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677888888899999988887644 3556667777778888888888888776554443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.24 E-value=61 Score=37.13 Aligned_cols=144 Identities=12% Similarity=-0.032 Sum_probs=92.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 672 LISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 672 ~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~ 751 (954)
+....++...++.+|..+-...+........... ..-.+..|+.+..+|-..++...-...+..-+...
T Consensus 131 Lv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtl-----------D~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA 199 (493)
T KOG2581|consen 131 LVLLFLIDQKEYKEADKISDALLASISIQNRRTL-----------DLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA 199 (493)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhH-----------HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh
Confidence 3344455678899998888776543111111000 11122345556667777777665555555544432
Q ss_pred c--CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--h--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 752 I--ESRPFAAICFCNRAAALQALGQIADAIADCSLAMA--L--DENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 752 ~--~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~--l--dP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
. .+....+.+.+.+-..|+..+.|+.|-....++.- . +...+..++.+|.+..-+.+|..|.+++-+|+...|.
T Consensus 200 tLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 200 TLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred hhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 1 11234566777777888999999999888877641 1 1233566788899999999999999999999999886
Q ss_pred h
Q 002199 826 Q 826 (954)
Q Consensus 826 ~ 826 (954)
.
T Consensus 280 ~ 280 (493)
T KOG2581|consen 280 H 280 (493)
T ss_pred h
Confidence 3
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=87.21 E-value=46 Score=35.71 Aligned_cols=50 Identities=22% Similarity=0.159 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhc----cCCchhhHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH
Q 002199 738 TEAVEHYTVALSTN----IESRPFAAICFCNRAAALQ-ALGQIADAIADCSLAMA 787 (954)
Q Consensus 738 eeAi~~y~kAL~l~----~~~~p~~a~~~~~lA~~y~-~lg~~eeAi~~~ekAL~ 787 (954)
+.|...|++|+.+. |..+|....+..|.+..|+ .+|+.++|+...++|+.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 45566666665542 2233555666666666554 47889999988888765
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.87 E-value=6.8 Score=40.67 Aligned_cols=57 Identities=12% Similarity=0.008 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIA 780 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~ 780 (954)
....+|..|. ..+.++|+..|.++|++....+..++.++..||.+|+.+++++.|.-
T Consensus 143 lq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 143 LQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 3344555444 78999999999999999877767889999999999999999998853
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.36 E-value=39 Score=39.88 Aligned_cols=102 Identities=15% Similarity=-0.024 Sum_probs=54.8
Q ss_pred HcCCHHHHHHHHH--HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHH
Q 002199 504 SLGRMREALEDCM--MAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTE 581 (954)
Q Consensus 504 ~lg~~eeAl~~~~--kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~ 581 (954)
..++++++++... +.+..-| ..-...++..+...|.++.|++.-+. |+
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D-----~~----------------------- 322 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD-----PD----------------------- 322 (443)
T ss_dssp HTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS------HH-----------------------
T ss_pred HcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC-----hH-----------------------
Confidence 3566777666554 2222222 23355667777788888888765432 21
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchh
Q 002199 582 YINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPV 645 (954)
Q Consensus 582 ~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l 645 (954)
.+-...++.|+++ .|++. ....+++..|..||...+..|+++-|..+|+++-+.
T Consensus 323 --~rFeLAl~lg~L~---~A~~~-----a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 323 --HRFELALQLGNLD---IALEI-----AKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDF 376 (443)
T ss_dssp --HHHHHHHHCT-HH---HHHHH-----CCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H
T ss_pred --HHhHHHHhcCCHH---HHHHH-----HHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc
Confidence 1222334556666 33321 122346778889999999999999998888886443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.32 E-value=14 Score=36.62 Aligned_cols=72 Identities=18% Similarity=0.143 Sum_probs=62.5
Q ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchh
Q 002199 487 CIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAA 558 (954)
Q Consensus 487 ~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~ 558 (954)
|.......+.....+-+...+..++...+...--+.|+.+.....-|.+++..|++.+|+..++.+.+-.+.
T Consensus 5 Cs~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 5 CSNRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 445566777777778888999999999999888899999999999999999999999999999998876543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.06 E-value=62 Score=36.00 Aligned_cols=113 Identities=12% Similarity=0.093 Sum_probs=71.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhH
Q 002199 500 ATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKV 579 (954)
Q Consensus 500 ~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~ 579 (954)
....+..+..+-|+....||+++|..+.+|..||.- ..--..+|...|+++|+....
T Consensus 192 Q~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~--------------------- 248 (556)
T KOG3807|consen 192 QKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGET--------------------- 248 (556)
T ss_pred HHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHH---------------------
Confidence 344455677778899999999999999999988753 223466788888888774221
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHhchhhh
Q 002199 580 TEYINCSGKLLEQKTSEAASSALERINEALSISSCS--EKLLEMKADALYMLRKYEEAIQLCEHTLPVAE 647 (954)
Q Consensus 580 ~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~--~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p 647 (954)
.+.........+... +| ....+ .+ ..+...+|.|..++|+..+|+..++...+..|
T Consensus 249 --~yr~sqq~qh~~~~~---da------~~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 249 --IYRQSQQCQHQSPQH---EA------QLRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred --HHhhHHHHhhhccch---hh------hhhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 222222222222111 11 11111 22 23445688999999999999999998877665
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=85.99 E-value=20 Score=41.91 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~ 751 (954)
+...|..|...|+...|+.+|..|+.+.
T Consensus 373 ~vLAg~~~~~~~~~~~a~rcy~~a~~vY 400 (414)
T PF12739_consen 373 MVLAGHRYSKAGQKKHALRCYKQALQVY 400 (414)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 3446888999999999999999998775
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.87 E-value=1.2 Score=33.30 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 794 KAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 794 ~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
++|..||.+-+..++|++|+.+|+++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999883
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.28 E-value=26 Score=38.51 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
..+.++..++..+...++++.++..+++.+.++ |.+-..|..+-.+|+..|+...|+..|++.-.+
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d----p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELD----PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 345677889999999999999999999999999 888889999999999999999999999987664
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.80 E-value=81 Score=36.28 Aligned_cols=179 Identities=15% Similarity=0.073 Sum_probs=118.9
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH------------ccCHHHHHHHHHHhchhhhhh
Q 002199 582 YINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYM------------LRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 582 ~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~------------lg~~eeAi~~~ekaL~l~p~~ 649 (954)
...........+.|+. ++++.=.+.+..+|....++..+=.++.. ..-+++-+.+...+|+.+|+.
T Consensus 31 ~~s~i~~~r~~~~yd~--e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npks 108 (421)
T KOG0529|consen 31 LFSIIQKKREAKEYDE--EHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKS 108 (421)
T ss_pred HHHHHHHHHhccccch--HHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchh
Confidence 3344444445566664 67777778888888876666554433332 223556677888888999987
Q ss_pred hhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002199 650 FASVLADNGSVTYSLARLWRWRLISKSYFCIGK--LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSA 727 (954)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~--~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~l 727 (954)
+. +|+.+..++.+.+. +..-+.+.+++++.+|.+.....- +.. -.
T Consensus 109 Y~-----------------aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~Y------------RRf----V~ 155 (421)
T KOG0529|consen 109 YG-----------------AWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHY------------RRF----VV 155 (421)
T ss_pred HH-----------------HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHH------------HHH----HH
Confidence 54 78888888886664 688899999999999988774410 000 01
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHh------c------CHHHHHHHHHHHHHhCCCCHHH
Q 002199 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQAL------G------QIADAIADCSLAMALDENYTKA 795 (954)
Q Consensus 728 G~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~l------g------~~eeAi~~~ekAL~ldP~~~~a 795 (954)
+.+-.......+=+++.+++|.-+ +.+..+|.++..++..+ | -...-+.+-..|+-.+|++..+
T Consensus 156 ~~~~~~~~~~~~El~ftt~~I~~n----fSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~ 231 (421)
T KOG0529|consen 156 EQAERSRNLEKEELEFTTKLINDN----FSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSC 231 (421)
T ss_pred HHHhcccccchhHHHHHHHHHhcc----chhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccce
Confidence 112222234666788888888877 78888998888777632 3 1334455666777789998887
Q ss_pred HHHH
Q 002199 796 VSRR 799 (954)
Q Consensus 796 l~~l 799 (954)
|+..
T Consensus 232 WfY~ 235 (421)
T KOG0529|consen 232 WFYH 235 (421)
T ss_pred eeeh
Confidence 7663
|
|
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=84.69 E-value=16 Score=40.64 Aligned_cols=187 Identities=14% Similarity=0.078 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHH
Q 002199 598 ASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSY 677 (954)
Q Consensus 598 a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y 677 (954)
+.++|..-.-.+.+-|..++++-.++.+++..-+... ..+.+... + ......-.+|
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~A---------R~~~~G~~-v-----lL~dQDr~lW--------- 267 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPA---------RFDADGEP-V-----LLEDQDRSLW--------- 267 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhh---------ccCCCCCe-e-----eccccchhhh---------
Confidence 3477777777777888888888887777665433221 11111100 0 0001111122
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchh
Q 002199 678 FCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPF 757 (954)
Q Consensus 678 ~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~ 757 (954)
..+-.++++..+.+++.....-+..+.. +..-.......-..-+|..-..+|+....+.|
T Consensus 268 -~r~lI~eg~all~rA~~~~~pGPYqlqA--------------AIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap----- 327 (415)
T COG4941 268 -DRALIDEGLALLDRALASRRPGPYQLQA--------------AIAALHARARRAEDTDWPAIDALYDALEQAAP----- 327 (415)
T ss_pred -hHHHHHHHHHHHHHHHHcCCCChHHHHH--------------HHHHHHHhhcccCCCChHHHHHHHHHHHHhCC-----
Confidence 2333567788888887765432221111 11111111112344578777778877777763
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 758 AAICFCNRAAALQALGQIADAIADCSLAMAL--DENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 758 ~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l--dP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
++.+-.|++.+..+..=...++...+...+- -..+...+-.+|.++.++|+.++|...|++++.+.++..+
T Consensus 328 SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 328 SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 4567778888887777777788777766543 2356677788999999999999999999999999665544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=84.38 E-value=1.4e+02 Score=38.76 Aligned_cols=132 Identities=20% Similarity=0.129 Sum_probs=67.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 672 LISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRAL-LHHKSAGNEAFKSGRYTEAVEHYTVALST 750 (954)
Q Consensus 672 ~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~-~~~~~lG~~~~~~g~~eeAi~~y~kAL~l 750 (954)
.-|..|...|+.++|+..|+.+.. +...+.....+......+ .....+...+..++++-+|-+.....+.-
T Consensus 957 ~Aal~Ye~~GklekAl~a~~~~~d--------Wr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 957 EAALMYERCGKLEKALKAYKECGD--------WREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred HHHHHHHHhccHHHHHHHHHHhcc--------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence 346677788888888888877643 111111111111111111 11234566677788888887777666543
Q ss_pred ccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHH
Q 002199 751 NIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALD----ENYTKAVSRRAALHEMIRD-YTQAASDLQRLVSI 822 (954)
Q Consensus 751 ~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld----P~~~~al~~lA~ly~~lg~-~eeAi~~~ekAL~l 822 (954)
+..+.+ .|.+...|++|+..+..+-+.+ --.+.+....+.+..-+.+ .++=..+.++++.+
T Consensus 1029 -----~~~av~------ll~ka~~~~eAlrva~~~~~~d~iee~l~~al~e~~~~~~~~L~~~k~~f~~yk~RLl~v 1094 (1265)
T KOG1920|consen 1029 -----PEEAVA------LLCKAKEWEEALRVASKAKRDDIIEEVLKPALLEAFGEVLEFLEDVKEQFVKYKKRLLVV 1094 (1265)
T ss_pred -----HHHHHH------HHhhHhHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332 3444567888887776654211 0012333444555555555 33333444455444
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.87 E-value=1.4 Score=32.95 Aligned_cols=28 Identities=29% Similarity=0.253 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
+|..||.+-+..++|++|+..|+++|++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=83.71 E-value=34 Score=39.96 Aligned_cols=32 Identities=13% Similarity=-0.019 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLS 481 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~ 481 (954)
..+.+|+.+|-.++|+.|...|+.+.+-.-.+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D 241 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND 241 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc
Confidence 46789999999999999999999888754443
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.23 E-value=0.59 Score=47.73 Aligned_cols=50 Identities=36% Similarity=0.448 Sum_probs=42.3
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKES 915 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l 915 (954)
.+.|++|++....+..+|+++|+++...+|||+....+...+|.+..+..
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~ 162 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEK 162 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHH
Confidence 57799999999999999999999999999999988877666665554433
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.29 E-value=1.1e+02 Score=36.08 Aligned_cols=170 Identities=12% Similarity=0.031 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcc
Q 002199 581 EYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSV 660 (954)
Q Consensus 581 ~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~ 660 (954)
+++.++..|...+. + +-...+++.++.+=++...-..|+..|.. .+...++.+|.+++..--..-+
T Consensus 101 al~el~q~y~en~n-~---~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q--------- 166 (711)
T COG1747 101 ALLELLQCYKENGN-E---QLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQ--------- 166 (711)
T ss_pred HHHHHHHHHHhcCc-h---hhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhh---------
Confidence 45556666665532 2 35556667777776677666777777666 7777788888777643211000
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 002199 661 TYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEA 740 (954)
Q Consensus 661 ~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeA 740 (954)
.... .+.+++...+.+++......++.....-.........+...-.-|-...+|.+|
T Consensus 167 ~~~i----------------------~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~ea 224 (711)
T COG1747 167 NAAI----------------------KEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEA 224 (711)
T ss_pred hhhH----------------------HHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHH
Confidence 0011 122333333333332222111111111111111111222233456677899999
Q ss_pred HHHHHHHHhhccCCchhhHHHHHHHHHHHHH--------------------hcCHHHHHHHHHHHHHhCC
Q 002199 741 VEHYTVALSTNIESRPFAAICFCNRAAALQA--------------------LGQIADAIADCSLAMALDE 790 (954)
Q Consensus 741 i~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~--------------------lg~~eeAi~~~ekAL~ldP 790 (954)
|+.+...++.+ ..+..+.-++-.-+.. -.++.+|+..|++.+-++.
T Consensus 225 i~Ilk~il~~d----~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~e 290 (711)
T COG1747 225 IRILKHILEHD----EKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDE 290 (711)
T ss_pred HHHHHHHhhhc----chhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheecc
Confidence 99999998887 3333333333332222 3478888889988886654
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.90 E-value=17 Score=42.42 Aligned_cols=88 Identities=17% Similarity=0.046 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFC 679 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~ 679 (954)
..+..|+.++...+.++.+|........+.+.+.+--.+|.+++...|++.. .|...|.-.+.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~d-----------------LWI~aA~wefe 151 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPD-----------------LWIYAAKWEFE 151 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCch-----------------hHHhhhhhHHh
Confidence 5566677777777777777777666666666677777777777777777654 34444444444
Q ss_pred cCC-HHHHHHHHHHHHhhCCCCcchh
Q 002199 680 IGK-LEVALDLLQKLEQVGSISDRYG 704 (954)
Q Consensus 680 lG~-~eeAl~~l~kal~l~p~~~~~~ 704 (954)
.+. .+.|...+.++|+.+|+.+...
T Consensus 152 ~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 152 INLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred hccchHHHHHHHHHHhhcCCCChHHH
Confidence 444 7777777777777777776654
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=81.85 E-value=6.8 Score=45.08 Aligned_cols=125 Identities=14% Similarity=0.062 Sum_probs=85.6
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHH
Q 002199 503 ISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEY 582 (954)
Q Consensus 503 ~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~ 582 (954)
+..|+...|-+.+..+|...|..+......+.+...+|.|+.|.+.+.-+-.+-..- . ...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~-----------------~--~~~ 360 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT-----------------D--STL 360 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC-----------------c--hHH
Confidence 346888888888999999999999988999999999999999998876543321100 0 001
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 583 INCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 583 l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
--+.+.+...++++ .|+....-.+...-.++++....|-....+|-++++..++++++.++|..
T Consensus 361 ~~~~r~~~~l~r~~---~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 361 RCRLRSLHGLARWR---EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHhhhchhhHH---HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 11122334445555 55555555555555566666666666777888888888888888887753
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.36 E-value=6.1 Score=43.00 Aligned_cols=64 Identities=20% Similarity=0.131 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 760 ICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 760 ~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
..+...+..|...|.+.+|+.++++++.++|-+...+..+-.++..+|+--.|+..|++.-+..
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vl 343 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHH
Confidence 3445567888999999999999999999999999999999999999999999999999887764
|
|
| >TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family | Back alignment and domain information |
|---|
Probab=80.78 E-value=51 Score=36.80 Aligned_cols=212 Identities=15% Similarity=0.083 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHH----HhCCCCcccccCCchH----HHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 445 QETCEMWRLRGNQAYKNN-NLTEAEDFYTQGI----NSVPLSETAGCCIKPL----VLCYSNRAATRISLGRMREALEDC 515 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g-~y~eAi~~y~kAL----~~~P~~~~~~~~~~~l----a~~~~~lA~~y~~lg~~eeAl~~~ 515 (954)
.+.-+.+..++..+..+. .+..+..+.+-++ ...|.... +....+ +.....+-..+ ..+++.+.++.+
T Consensus 46 R~~~~~~~~lA~~l~eq~~~~~~~yrL~R~a~W~~I~~lP~~~~--~g~T~L~~p~ad~~~~~~~~~-~~~~~~~Ll~~~ 122 (301)
T TIGR03362 46 RALRDTLLQVADLLLEQDPDDPRGYRLRRTALWGTITALPMSNA--DGRTRLAPPPADRVADYQELL-AQADWAALLQRV 122 (301)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhccCCCCCC--CCCccCCCCCHHHHHHHHHHH-hCCCHHHHHHHH
Confidence 334445556666666664 3456666665553 22343210 011111 22222222222 667889999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCh
Q 002199 516 MMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTS 595 (954)
Q Consensus 516 ~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~ 595 (954)
++.+...|-....++..+.++.++| ++.+.......+..- + ..+-.+....+..|..
T Consensus 123 E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~f----------------L------~RlP~L~~L~F~DGtP 179 (301)
T TIGR03362 123 EQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAF----------------L------ERLPGLLELKFSDGTP 179 (301)
T ss_pred HHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH----------------H------HhCcChhhcccCCCCC
Confidence 9999999999999999999999999 566655554443320 0 0000111111122211
Q ss_pred HHHHHHHHHHHHHHhc-----------CC--CCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchh
Q 002199 596 EAASSALERINEALSI-----------SS--CSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTY 662 (954)
Q Consensus 596 ~~a~eAL~~l~kaL~~-----------~P--~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~ 662 (954)
=.-.+....+...... .+ .+..-...-+..+...+..++|+..++..+...+..
T Consensus 180 Fad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~------------- 246 (301)
T TIGR03362 180 FADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREP------------- 246 (301)
T ss_pred CCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCCh-------------
Confidence 0000122222111000 01 112223344778888999999999999865543322
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 663 SLARLWRWRLISKSYFCIGKLEVALDLLQKLEQV 696 (954)
Q Consensus 663 ~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l 696 (954)
-.+++..+.++.++...|.++-|+.+|+.+.+.
T Consensus 247 -R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 247 -RERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred -HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 233445677899999999999999999988653
|
This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812). |
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=80.34 E-value=6.1 Score=42.97 Aligned_cols=62 Identities=19% Similarity=0.144 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002199 467 AEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLV 538 (954)
Q Consensus 467 Ai~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~ 538 (954)
|+.+|.+|+.+.|.+. ..|..+|.++...|+.-.|+-+|-+++....-++.+..+|..++..
T Consensus 1 A~~~Y~~A~~l~P~~G----------~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNG----------NPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBS----------HHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCC----------CcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 7889999999999998 8999999999999999999999999997765567788888777777
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 954 | ||||
| 2lni_A | 133 | Solution Nmr Structure Of Stress-Induced-Phosphopro | 9e-10 | ||
| 4gco_A | 126 | Central Domain Of Stress-Induced Protein-1 (Sti-1) | 5e-08 | ||
| 2vyi_A | 131 | Crystal Structure Of The Tpr Domain Of Human Sgt Le | 2e-07 | ||
| 2y4t_A | 450 | Crystal Structure Of The Human Co-Chaperone P58(Ipk | 9e-07 | ||
| 3uq3_A | 258 | Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = | 3e-06 | ||
| 3sz7_A | 164 | Crystal Structure Of The Sgt2 Tpr Domain From Asper | 4e-06 | ||
| 2y4u_A | 450 | Crystal Structure Of Human P58(Ipk) In Space Group | 4e-06 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 6e-06 | ||
| 2dmx_A | 92 | Solution Structure Of The J Domain Of Dnaj Homolog | 2e-05 | ||
| 1ihg_A | 370 | Bovine Cyclophilin 40, Monoclinic Form Length = 370 | 2e-05 | ||
| 3upv_A | 126 | Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = | 3e-05 | ||
| 2c2l_A | 281 | Crystal Structure Of The Chip U-Box E3 Ubiquitin Li | 3e-05 | ||
| 3q47_B | 137 | Crystal Structure Of Tpr Domain Of Chip Complexed W | 4e-05 | ||
| 1p5q_A | 336 | Crystal Structure Of Fkbp52 C-Terminal Domain Lengt | 7e-05 | ||
| 1wao_1 | 477 | Pp5 Structure Length = 477 | 1e-04 | ||
| 1a17_A | 166 | Tetratricopeptide Repeats Of Protein Phosphatase 5 | 2e-04 | ||
| 1qz2_A | 336 | Crystal Structure Of Fkbp52 C-Terminal Domain Compl | 3e-04 | ||
| 3lz8_A | 329 | Structure Of A Putative Chaperone Dnaj From Klebsie | 3e-04 | ||
| 2gw1_A | 514 | Crystal Structure Of The Yeast Tom70 Length = 514 | 3e-04 | ||
| 2dba_A | 148 | The Solution Structure Of The Tetratrico Peptide Re | 4e-04 | ||
| 3lca_A | 533 | Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term | 4e-04 | ||
| 3fp2_A | 537 | Crystal Structure Of Tom71 Complexed With Hsp82 C-T | 4e-04 | ||
| 2ej7_A | 82 | Solution Structure Of The Dnaj Domain Of The Human | 4e-04 | ||
| 2bug_A | 140 | Solution Structure Of The Tpr Domain From Protein P | 4e-04 | ||
| 1xbl_A | 107 | Nmr Structure Of The J-Domain (Residues 2-76) In Th | 5e-04 | ||
| 2kqx_A | 73 | Nmr Structure Of The J-Domain (Residues 2-72) In Th | 5e-04 | ||
| 1bq0_A | 103 | J-Domain (Residues 1-77) Of The Escherichia Coli N- | 5e-04 | ||
| 2ctp_A | 78 | Solution Structure Of J-Domain From Human Dnaj Subf | 7e-04 | ||
| 2ctw_A | 109 | Solution Structure Of J-Domain From Mouse Dnaj Subf | 7e-04 |
| >pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133 | Back alignment and structure |
|
| >pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126 | Back alignment and structure |
|
| >pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131 | Back alignment and structure |
|
| >pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450 | Back alignment and structure |
|
| >pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258 | Back alignment and structure |
|
| >pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164 | Back alignment and structure |
|
| >pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92 | Back alignment and structure |
|
| >pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370 | Back alignment and structure |
|
| >pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126 | Back alignment and structure |
|
| >pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281 | Back alignment and structure |
|
| >pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137 | Back alignment and structure |
|
| >pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336 | Back alignment and structure |
|
| >pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477 | Back alignment and structure |
|
| >pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166 | Back alignment and structure |
|
| >pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336 | Back alignment and structure |
|
| >pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329 | Back alignment and structure |
|
| >pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514 | Back alignment and structure |
|
| >pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148 | Back alignment and structure |
|
| >pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533 | Back alignment and structure |
|
| >pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537 | Back alignment and structure |
|
| >pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82 | Back alignment and structure |
|
| >pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107 | Back alignment and structure |
|
| >pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73 | Back alignment and structure |
|
| >pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103 | Back alignment and structure |
|
| >pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78 | Back alignment and structure |
|
| >pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 257 bits (659), Expect = 7e-77
Identities = 83/471 (17%), Positives = 167/471 (35%), Gaps = 64/471 (13%)
Query: 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRIS 504
E G + L +A + ++ P + + Y RA ++
Sbjct: 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN----------YIAYYRRATVFLA 72
Query: 505 LGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRR 564
+G+ + AL D + +F ++ L G+++ A+ + K+L S
Sbjct: 73 MGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP----SEN 128
Query: 565 ITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKAD 624
EA L K+ ++ + + AA + +++ L + +L E++A+
Sbjct: 129 EEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA---IAFLDKILEVCVWDAELRELRAE 185
Query: 625 ALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLE 684
+ +AI + + N + IS Y+ +G E
Sbjct: 186 CFIKEGEPRKAISDLKAASKLKNDN-----------------TEAFYKISTLYYQLGDHE 228
Query: 685 VALDLLQK-LEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEH 743
++L +++ L+ + + + + V+ L + E + GRYT+A
Sbjct: 229 LSLSEVRECLK----LDQDH-----KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSK 279
Query: 744 YTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803
Y + T + + +AI CS + ++ + A+ RA +
Sbjct: 280 YESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339
Query: 804 EMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEEDAKKG 863
+ Y +A D + EN +Q L + K+
Sbjct: 340 LIEEMYDEAIQDYETAQEHNEND--------------------QQIREGLEKAQRLLKQS 379
Query: 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKE 914
+ D+Y ILGVK + +I KAYRK AL+ HPD +++++ K +
Sbjct: 380 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFID 430
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 9e-12
Identities = 48/328 (14%), Positives = 94/328 (28%), Gaps = 101/328 (30%)
Query: 495 YSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL- 553
+ + + +++ D ++ ++ K L G++ +A +H +
Sbjct: 6 HHSSGVDLGTENLYFQSMAD-----------VEKHLELGKKLLAAGQLADALSQFHAAVD 54
Query: 554 ---NSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALS 610
++ A Y + A+ + AL
Sbjct: 55 GDPDNYIA-----------------------YYRRA----------TVFLAMGKSKAAL- 80
Query: 611 ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRW 670
D + IQL + +F + L
Sbjct: 81 ------------PD-------LTKVIQL--------KMDFTAAR-------LQRGHL--- 103
Query: 671 RLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE 730
GKL+ A ++V + +E E+ L + A
Sbjct: 104 ------LLKQGKLDEA---EDDFKKVLKSNPSE-NEEKEAQSQLIKSDEMQRLRSQA-LN 152
Query: 731 AFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDE 790
AF SG YT A+ L + A RA G+ AI+D A L
Sbjct: 153 AFGSGDYTAAIAFLDKILEVC----VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN 208
Query: 791 NYTKAVSRRAALHEMIRDYTQAASDLQR 818
+ T+A + + L+ + D+ + S+++
Sbjct: 209 DNTEAFYKISTLYYQLGDHELSLSEVRE 236
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 1e-45
Identities = 60/382 (15%), Positives = 130/382 (34%), Gaps = 52/382 (13%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKP-LVLCYSNRAATRISLGR 507
E G + L +A + ++ P + Y RA +++G+
Sbjct: 4 EKHLELGKKLLAAGQLADALSQFHAAVD-----------GDPDNYIAYYRRATVFLAMGK 52
Query: 508 MREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL----NSAAAVCLDR 563
+ AL D + +F ++ L G+++ A+ + K+L +
Sbjct: 53 SKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE----- 107
Query: 564 RITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKA 623
EA L KA ++ + + + AA + +++ L + +L E++A
Sbjct: 108 ---KEAESQLVKADEMQRLRSQALDAFDGADYTAA---ITFLDKILEVCVWDAELRELRA 161
Query: 624 DALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKL 683
+ + +AI + + + A + IS Y+ +G
Sbjct: 162 ECFIKEGEPRKAISDLKAAS---KLKSDNTEA--------------FYKISTLYYQLGDH 204
Query: 684 EVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEH 743
E++L +++ + + + + V+ L + E + GRYT+A
Sbjct: 205 ELSLSEVRE---CLKLDQDH-----KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSK 256
Query: 744 YTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803
Y + T + + +AI CS + ++ + A+ RA +
Sbjct: 257 YESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316
Query: 804 EMIRDYTQAASDLQRLVSILEN 825
+ Y +A D + EN
Sbjct: 317 LIEEMYDEAIQDYEAAQEHNEN 338
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 22/194 (11%), Positives = 52/194 (26%), Gaps = 32/194 (16%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPL--VLCYSNRAATRISLG 506
E + Y+ + + + + + K + + A I G
Sbjct: 189 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG 248
Query: 507 RMREALEDCMMAATVDPNF----LKVYMRAAKCHLVLGEIENAQHYYHKLL--NSAAAVC 560
R +A +P+ ++ R C + A ++L
Sbjct: 249 RYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNA 308
Query: 561 LDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLE 620
L R A+ + E A++ A + +++ E
Sbjct: 309 LKDR-----AEAYLIEEMYDE-------------------AIQDYEAAQEHNENDQQIRE 344
Query: 621 MKADALYMLRKYEE 634
A +L++ ++
Sbjct: 345 GLEKAQRLLKQSQK 358
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 1e-26
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCS 783
+ G E F + AV+ YT + P A + NRAAAL L +AIADC+
Sbjct: 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA----PEDARGYSNRAAALAKLMSFPEAIADCN 62
Query: 784 LAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQ 833
A+ D N+ +A R+A +++Y A L + + + +
Sbjct: 63 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAR 112
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 1e-17
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
E RL G + + ++ A YT+ I P YSNRAA L
Sbjct: 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR----------GYSNRAAALAKLMSF 54
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL 553
EA+ DC A DPNF++ Y+R A + + E +A
Sbjct: 55 PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 99
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 6e-26
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCS 783
+ GNE FK G Y A+ YT AL + + A+ NRAA L A + S
Sbjct: 31 LRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEAS 89
Query: 784 LAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSIL-ENQSAEKA 831
A+ D KA+ RR+ E + QA DLQR VS+ +N+ ++A
Sbjct: 90 KAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 3e-18
Identities = 23/129 (17%), Positives = 42/129 (32%), Gaps = 7/129 (5%)
Query: 425 NKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETA 484
+ P + E R GN+ +K + A YTQ + +
Sbjct: 5 SSGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD- 63
Query: 485 GCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIEN 544
+ + NRAA + L +A + A D +K R ++ LG ++
Sbjct: 64 ------QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQ 117
Query: 545 AQHYYHKLL 553
A + +
Sbjct: 118 AVLDLQRCV 126
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 1e-25
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCS 783
K+ GNE FK G Y A+ HY A+ + P AI + NRAA L L + A+ DC
Sbjct: 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD----PENAILYSNRAACLTKLMEFQRALDDCD 71
Query: 784 LAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSIL-ENQSAEKA 831
+ LD + K R+AA +R++++A + + + N+ A +
Sbjct: 72 TCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 6e-19
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 17/130 (13%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
+ + +GN+ +K + A Y + + P + YSNRAA L
Sbjct: 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI----------LYSNRAACLTKLMEF 63
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE 568
+ AL+DC +D F+K Y+R A C + + E AQ Y L +D E
Sbjct: 64 QRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQ------VDPSNE-E 116
Query: 569 AADGLQKAQK 578
A +G++ +
Sbjct: 117 AREGVRNCLR 126
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 2e-25
Identities = 55/372 (14%), Positives = 114/372 (30%), Gaps = 47/372 (12%)
Query: 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMRE 510
+ +GNQ ++N +A +Y + +K + YSN +A +S+G +++
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALE-----------LKEDPVFYSNLSACYVSVGDLKK 57
Query: 511 ALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAA 570
+E A + P++ KV +R A + LG+ +A +
Sbjct: 58 VVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSV---------------LSLN 102
Query: 571 DGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLR 630
A K K E +S+ K + K + L +
Sbjct: 103 GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162
Query: 631 KYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLL 690
+ + L A + ++ S R A L
Sbjct: 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNL---YKRSPESYDKADESFTKAARLF 219
Query: 691 QKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALST 750
++ + E L+ ++++ + G F A E A+
Sbjct: 220 EE-----QLDKNNEDEKLKEKLAIS--------LEHTGIFKFLKNDPLGAHEDIKKAIE- 265
Query: 751 NIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYT 810
+ R + + A + + A+ LD N + R ++ ++++Y
Sbjct: 266 -LFPRVNS---YIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321
Query: 811 QAASDLQRLVSI 822
QA D + +
Sbjct: 322 QAGKDFDKAKEL 333
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 3e-15
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCS 783
K GN+ F++ +Y +A+++Y A +E + + + N +A ++G + + +
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWA----LELKE-DPVFYSNLSACYVSVGDLKKVVEMST 63
Query: 784 LAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSA 828
A+ L +Y+K + RRA+ +E + + A DL L + A
Sbjct: 64 KALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDA 108
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 2e-14
Identities = 39/377 (10%), Positives = 88/377 (23%), Gaps = 56/377 (14%)
Query: 451 WRLRGNQAYKNNNLTEA-EDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMR 509
R + +A D +N + R + ++ +++
Sbjct: 76 LLRRASANEGLGKFADAMFDLSVLSLNGDFNDASI--------EPMLERNLNKQAMSKLK 127
Query: 510 EALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV-CLDRRITI- 567
E D A + K + + + D
Sbjct: 128 EKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEAD 187
Query: 568 -EAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADAL 626
E +GL K + K + L++ NE + LE
Sbjct: 188 KELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247
Query: 627 YMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVA 686
++ A + + + + + + + ++
Sbjct: 248 FLKNDPLGAHEDIKKAIELFPRVNS------------------YIYMALIMADRNDSTEY 289
Query: 687 LDLLQK-LEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYT 745
+ K L+ + S Y +H+ G F Y +A + +
Sbjct: 290 YNYFDKALKLDSNNSSVY-------------------YHR--GQMNFILQNYDQAGKDFD 328
Query: 746 VALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEM 805
A + P + A + D S A + + A +
Sbjct: 329 KAKELD----PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD 384
Query: 806 IRDYTQAASDLQRLVSI 822
D+ +A + +
Sbjct: 385 KNDFDKALKQYDLAIEL 401
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 2e-14
Identities = 49/413 (11%), Positives = 88/413 (21%), Gaps = 115/413 (27%)
Query: 414 EEENKYEDKVQNKFEAAEEVKQRTVS--PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFY 471
++ ++ K FE + A G + N+ A +
Sbjct: 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLA-----ISLEHTGIFKFLKNDPLGAHEDI 260
Query: 472 TQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMR 531
+ I + P V Y A E A +D N
Sbjct: 261 KKAIE-----------LFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN------- 302
Query: 532 AAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLE 591
N+ YYH+ Q +
Sbjct: 303 ------------NSSVYYHR------------------GQMNFILQNYDQ---------- 322
Query: 592 QKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFA 651
A + ++A + + A Y K+++ L +
Sbjct: 323 ---------AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE 373
Query: 652 SVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESS 711
++ + AL +I LE+
Sbjct: 374 V-----------------PNFFAEILTDKNDFDKALKQYDL-----AIE-------LENK 404
Query: 712 MSLAGTVRALLHHKSAGNEAFKS-GRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQ 770
+ A L K+ + + EA A + P + A
Sbjct: 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD----PRSEQAKIGLAQMKL 460
Query: 771 ALGQIADAIADCSLAMALDENYTKAVSRRAALHEM------IRDYTQAASDLQ 817
I +AI + L + + E IR A +Q
Sbjct: 461 QQEDIDEAITLFEESADLARTMEEKLQAI-TFAEAAKVQQRIRSDPVLAKKIQ 512
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 2e-13
Identities = 44/447 (9%), Positives = 109/447 (24%), Gaps = 82/447 (18%)
Query: 389 ISPSPNDKVSFSHQASSSLCKTVNGEEENKYEDKVQNKFEAAEEVKQRTVSPTAAFQETC 448
++ ND L + +N + +K ++K + A + + P ++
Sbjct: 101 LNGDFNDA-----SIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155
Query: 449 E--MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRIS-- 504
E + Y + + + ++A +
Sbjct: 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215
Query: 505 LGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRR 564
E L+ + + + A K A+ L R
Sbjct: 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKK------AIELFPR 269
Query: 565 ITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKAD 624
+ YI + + ++ S ++AL + S + + +
Sbjct: 270 VNS--------------YIYMALIMADRNDSTEY---YNYFDKALKLDSNNSSVYYHRGQ 312
Query: 625 ALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLE 684
++L+ Y++A + + + + + Y K +
Sbjct: 313 MNFILQNYDQAGKDFDKAKEL-DPENIFPYIQLACLAYRE----------------NKFD 355
Query: 685 VALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHY 744
L + ++ + +A++ Y
Sbjct: 356 DCETLFSEAKR------------KFPEAPEV--------PNFFAEILTDKNDFDKALKQY 395
Query: 745 TVALSTNIESRPFAAICFCNRAAAL---------QALGQIADAIADCSLAMALDENYTKA 795
+A IE + A + + +A A LD +A
Sbjct: 396 DLA----IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA 451
Query: 796 VSRRAALHEMIRDYTQAASDLQRLVSI 822
A + D +A + + +
Sbjct: 452 KIGLAQMKLQQEDIDEAITLFEESADL 478
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 3e-25
Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 4/110 (3%)
Query: 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCS 783
K GN F +Y EA Y A++ N P A+ + NRA + Q A+ADC
Sbjct: 12 LKEQGNRLFVGRKYPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPEQALADCR 67
Query: 784 LAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQ 833
A+ LD KA + Y +A ++LQR S+ + Q
Sbjct: 68 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD 117
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 6e-19
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 10/105 (9%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
+ + +GN+ + EA Y + I PL Y+NRA + + +
Sbjct: 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV----------YYTNRALCYLKMQQP 59
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL 553
+AL DC A +D +K + +C L + + A +
Sbjct: 60 EQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAY 104
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 6e-25
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Query: 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCS 783
K GN+A G +A++ Y+ A I+ P + + NR+AA G A D
Sbjct: 7 LKEKGNKALSVGNIDDALQCYSEA----IKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 62
Query: 784 LAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSIL-ENQSAEKA 831
+ L ++ K SR+AA E + + +A + + N ++
Sbjct: 63 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 111
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 7e-18
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISL 505
E + +GN+A N+ +A Y++ I P + YSNR+A
Sbjct: 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV----------LYSNRSAAYAKK 51
Query: 506 GRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL 553
G ++A ED + P++ K Y R A L E A+ Y + L
Sbjct: 52 GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGL 99
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 1e-24
Identities = 44/218 (20%), Positives = 74/218 (33%), Gaps = 20/218 (9%)
Query: 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCS 783
K GN F +Y EA Y A I P A+ + NRA + Q A+ADC
Sbjct: 7 LKEQGNRLFVGRKYPEAAACYGRA----ITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 784 LAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISS 843
A+ LD KA + Y +A ++LQR S+ + Q
Sbjct: 63 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP-------- 114
Query: 844 RDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD 903
LR A + + E+ + + + + L + A R+ L+ ++
Sbjct: 115 SALRIAKKKRWNSIEERRIHQESELHSYL--------TRLIAAERERELEECQRNHEGHE 166
Query: 904 QEQEIRKATKESPQNSHYGRSSDAYGYACRSSRRQSRQ 941
+ IR + ++ +R+ R
Sbjct: 167 DDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRD 204
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 91.9 bits (228), Expect = 1e-20
Identities = 32/196 (16%), Positives = 64/196 (32%), Gaps = 14/196 (7%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
+ + +GN+ + EA Y + I PL Y+NRA + + +
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY----------YTNRALCYLKMQQP 54
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL----NSAAAVCLDRR 564
+AL DC A +D +K + +C L + + A + D
Sbjct: 55 EQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP 114
Query: 565 ITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKAD 624
+ A + I+ +L T A+ + E E ++A
Sbjct: 115 SALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQ 174
Query: 625 ALYMLRKYEEAIQLCE 640
+ K+++ + +
Sbjct: 175 QACIEAKHDKYMADMD 190
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 1e-24
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCS 783
K+ GNE F+ G Y +A++HYT A+ N P A + NRAA L + A+ DC
Sbjct: 19 VKNKGNECFQKGDYPQAMKHYTEAIKRN----PKDAKLYSNRAACYTKLLEFQLALKDCE 74
Query: 784 LAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSIL-ENQSAEKAKQ 833
+ L+ + K +R+AA E ++DYT+A Q+ + + + A Q
Sbjct: 75 ECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQ 125
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 3e-18
Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 17/130 (13%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
M + +GN+ ++ + +A YT+ I P YSNRAA L
Sbjct: 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKL----------YSNRAACYTKLLEF 66
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE 568
+ AL+DC ++P F+K Y R A + + A Y K L+ LD E
Sbjct: 67 QLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD------LDSSCK-E 119
Query: 569 AADGLQKAQK 578
AADG Q+
Sbjct: 120 AADGYQRCMM 129
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 99.0 bits (247), Expect = 3e-24
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCS 783
K+ N+ FK+ Y A++ Y+ A IE P AI + NR+ A A+ D +
Sbjct: 16 LKTQANDYFKAKDYENAIKFYSQA----IELNPSNAIYYGNRSLAYLRTECYGYALGDAT 71
Query: 784 LAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSR 835
A+ LD+ Y K RRAA + + + A D + +V + + K K
Sbjct: 72 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 3e-18
Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 10/114 (8%)
Query: 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRA 499
P + E + + N +K + A FY+Q I P + Y NR+
Sbjct: 5 PADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY----------YGNRS 54
Query: 500 ATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL 553
+ AL D A +D ++K Y R A ++ LG+ A Y ++
Sbjct: 55 LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVV 108
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 6e-24
Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCS 783
KS GN A Y++A++ YT A + P I NRAAA A GQ A D
Sbjct: 14 LKSEGNAAMARKEYSKAIDLYTQA----LSIAPANPIYLSNRAAAYSASGQHEKAAEDAE 69
Query: 784 LAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQ 833
LA +D Y+KA SR + DY A ++ + N ++ K+
Sbjct: 70 LATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 2e-17
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 10/114 (8%)
Query: 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRA 499
+ A + + GN A ++A D YTQ ++ P + SNRA
Sbjct: 3 RSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIY----------LSNRA 52
Query: 500 ATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL 553
A + G+ +A ED +A VDP + K + R + + + A+ Y K +
Sbjct: 53 AAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGI 106
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 2e-23
Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 15/114 (13%)
Query: 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCS 783
K GN FK G Y EAV Y ++ P + + N+A AL LG+ AI C
Sbjct: 7 QKEQGNSLFKQGLYREAVHCYDQLITAQ----PQNPVGYSNKAMALIKLGEYTQAIQMCQ 62
Query: 784 LAMALDENYTKAVSRRAALHEM------IRDYTQAASDLQRLVSILENQSAEKA 831
+ R + + + ++ L + +++
Sbjct: 63 QGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL-----PEGYDRS 111
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 6e-17
Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 11/106 (10%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
E + +GN +K EA Y Q I + P + YSN+A I LG
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVG----------YSNKAMALIKLGEY 54
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLN 554
+A++ C V +R +K L + A +
Sbjct: 55 TQAIQMCQQGLRYTSTAEHVAIR-SKLQYRLELAQGAVGSVQIPVV 99
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 2e-23
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCS 783
K+ GNE K + AV Y A IE P A+ FCNRAAA LG A A+ DC
Sbjct: 15 LKTEGNEQMKVENFEAAVHFYGKA----IELNPANAVYFCNRAAAYSKLGNYAGAVQDCE 70
Query: 784 LAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
A+ +D Y+KA R + + +A + ++ + +
Sbjct: 71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 6e-17
Identities = 31/105 (29%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
E + GN+ K N A FY + I P + + NRAA LG
Sbjct: 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVY----------FCNRAAAYSKLGNY 62
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL 553
A++DC A +DP + K Y R L + A YY K L
Sbjct: 63 AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 5e-23
Identities = 67/400 (16%), Positives = 117/400 (29%), Gaps = 78/400 (19%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
+ RGN + N EA +Y I P YSN +A IS G +
Sbjct: 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF----------YSNISACYISTGDL 75
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL------NSAAAVCLD 562
+ +E A + P+ K +R A + LG +A L ++ L+
Sbjct: 76 EKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLE 135
Query: 563 RRITIEA---------------ADGLQKAQKVTEYINCSGKLLEQKTSEAAS---SALER 604
R + +A + L + + LE + +S +A
Sbjct: 136 RNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYAL 195
Query: 605 INEALSISSCSEKLLEMKADALYM--LRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTY 662
+++AL + + A+ L Y + P+ E N A L G
Sbjct: 196 LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRE-NAALALCYTGIF-- 252
Query: 663 SLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALL 722
+F L A LLQ+ S++L T +
Sbjct: 253 --------------HFLKNNLLDAQVLLQE------------------SINLHPTPNS-- 278
Query: 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADC 782
+ E + + A+ N P + +R L +A D
Sbjct: 279 -YIFLALTLADKENSQEFFKFFQKAVDLN----PEYPPTYYHRGQMYFILQDYKNAKEDF 333
Query: 783 SLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
A +L+ + A L +T++ +
Sbjct: 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 1e-16
Identities = 49/387 (12%), Positives = 98/387 (25%), Gaps = 86/387 (22%)
Query: 414 EEENKYEDKVQNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQ 473
N K + + + G + NNL +A+ +
Sbjct: 212 LVANDLLTKSTDMYHSLLSANTVDDPLRENAALA---LCYTGIFHFLKNNLLDAQVLLQE 268
Query: 474 GINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAA 533
IN + P Y A T +E + A ++P + Y
Sbjct: 269 SIN-----------LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317
Query: 534 KCHLVLGEIENAQHYYHKLL----NSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKL 589
+ + +L + +NA+ + K + YI + L
Sbjct: 318 QMYFILQDYKNAKEDFQKAQSLNPENVYP-----------------------YIQLACLL 354
Query: 590 LEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649
+Q + NE ++ A+ L ++ AI+ + + E+
Sbjct: 355 YKQGKFT---ESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL-EEV 410
Query: 650 FASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILE 709
+ G + L R + K A+ LL K + L+
Sbjct: 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK-----ACE-------LD 458
Query: 710 SSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALS-------------------- 749
A + + EA+E + +
Sbjct: 459 PRSEQA--------KIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKI 510
Query: 750 -TNIESRPFAAICFCNRAAALQALGQI 775
+ + P + A +A G +
Sbjct: 511 QKRLRADPIISAKMELTLARYRAKGML 537
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 1e-14
Identities = 42/191 (21%), Positives = 75/191 (39%), Gaps = 12/191 (6%)
Query: 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCS 783
K+ GN F + + EA+++Y A IE P + + N +A + G + I +
Sbjct: 28 LKNRGNHFFTAKNFNEAIKYYQYA----IELDPNEPVFYSNISACYISTGDLEKVIEFTT 83
Query: 784 LAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAE--------KAKQSR 835
A+ + +++KA+ RRA+ +E + ++T A DL L + A KQ+
Sbjct: 84 KALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAM 143
Query: 836 SPGRTISSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHH 895
S+D + + L S A D +L + + + D A AL+
Sbjct: 144 KVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRL 203
Query: 896 PDKRSEYDQEQ 906
E
Sbjct: 204 YSATDEGYLVA 214
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 8e-09
Identities = 15/88 (17%), Positives = 25/88 (28%)
Query: 735 GRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTK 794
G + + R A+ NR +AI A+ LD N
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 795 AVSRRAALHEMIRDYTQAASDLQRLVSI 822
S +A + D + + + I
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEI 88
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 96.0 bits (239), Expect = 9e-21
Identities = 44/428 (10%), Positives = 95/428 (22%), Gaps = 56/428 (13%)
Query: 422 KVQNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLS 481
+ + V + T + Q P
Sbjct: 83 QALETVQRLLPVLCQAHGLTPQQVVA---IASHDGGKQALETVQRLLPVLCQAHGLTPEQ 139
Query: 482 ETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGE 541
A ++ + +L ++ L A + P + L
Sbjct: 140 VVA----------IASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALET 189
Query: 542 IENAQHYYHK--LLNSAAAVCLDRRITI--------EAADGLQKA-----QKVTEYINCS 586
++ + L V + L +A Q+V +
Sbjct: 190 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 249
Query: 587 GKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVA 646
G +T + L +A ++ + + L + + + +
Sbjct: 250 GGKQALETVQRLLPVL---CQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGL- 305
Query: 647 EKNFASVLADNGSVTYSLARLWR--------WRLISKSYFCIGKLEVALDLLQKLEQVGS 698
+A NG +L + R L + I + L+ +++
Sbjct: 306 TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQR--L 363
Query: 699 ISDRYGSEI-LESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPF 757
+ L +A S G + A P
Sbjct: 364 LPV-LCQAHGLTPEQVVA--------IASNGGGKQALETVQRLLPVLCQAHGLT----PE 410
Query: 758 AAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQ 817
+ + QAL + + A L A++ + S
Sbjct: 411 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPD 470
Query: 818 RLVSILEN 825
++ L N
Sbjct: 471 PALAALTN 478
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 2e-16
Identities = 38/390 (9%), Positives = 84/390 (21%), Gaps = 75/390 (19%)
Query: 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMRE 510
+ Q P A ++ + +L ++
Sbjct: 75 IASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA----------IASHDGGKQALETVQR 124
Query: 511 ALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKL--LNSAAAVCLDRRITI- 567
L A + P + L ++ + L V +
Sbjct: 125 LLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGK 184
Query: 568 -------EAADGLQKA-----QKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCS 615
L +A Q+V + G +T + L + +A ++
Sbjct: 185 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQR---LLPVLCQAHGLTPQQ 241
Query: 616 EKLLEMKADALYMLRKYEEAIQLCEHTL---PVAEKNFASVLADNGSVTYSLARLWRWRL 672
+ L + + + P +A N +L
Sbjct: 242 VVAIASNGGGKQALETVQRLLPVLCQAHGLTP----QQVVAIASNSGGKQAL-------- 289
Query: 673 ISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAF 732
++ L +L + + L +A S G
Sbjct: 290 --------ETVQRLLPVLCQ-----AHG-------LTPQQVVA--------IASNGGGKQ 321
Query: 733 KSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY 792
+ A P + + QAL + + A L
Sbjct: 322 ALETVQRLLPVLCQAHGLT----PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 377
Query: 793 TKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
A++ + + + L + +
Sbjct: 378 VVAIASNGGGKQALETVQRLLPVLCQAHGL 407
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 5e-13
Identities = 39/370 (10%), Positives = 83/370 (22%), Gaps = 82/370 (22%)
Query: 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKP-LVLCYSNRAATRISLGRMR 509
G + Q + P V+ ++ + +L ++
Sbjct: 211 IASNGGGKQALETVQRLLPVLCQAHG-----------LTPQQVVAIASNGGGKQALETVQ 259
Query: 510 EALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEA 569
L A + P + + L ++ + A L
Sbjct: 260 RLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQ------AHGLT------- 306
Query: 570 ADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYML 629
Q+V + G +T + L +A ++ + L
Sbjct: 307 ------PQQVVAIASNGGGKQALETVQRLLPVL---CQAHGLTPQQVVAIASHDGGKQAL 357
Query: 630 RKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDL 689
+ + + + +A NG + ++
Sbjct: 358 ETVQRLLPVLCQAHGL-TPEQVVAIASNGGG----------------KQALETVQRL--- 397
Query: 690 LQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALS 749
L L Q ++ V A+ H + A
Sbjct: 398 LPVLCQAHGLTPEQ--------------VVAIASH---DGGKQALETVQRLLPVLCQAHG 440
Query: 750 TNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDY 809
P + + AL I ++ A+A N AL +
Sbjct: 441 LT----PQQVVAIASNGGGRPALESIVAQLSRPDPALAALTND-----HLVALACLGG-- 489
Query: 810 TQAASDLQRL 819
A +++L
Sbjct: 490 RPALDAVKKL 499
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 2e-12
Identities = 39/365 (10%), Positives = 89/365 (24%), Gaps = 70/365 (19%)
Query: 459 YKNNNLTEAEDFYTQGINSVPLSETAGCCIKP-LVLCYSNRAATRISLGRMREALEDCMM 517
EA + + PL+ + P V+ ++ + +L ++ L
Sbjct: 44 RGGVTAVEAVHAWRNALTGAPLN------LTPEQVVAIASHDGGKQALETVQRLLPVLCQ 97
Query: 518 AATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQ 577
A + P + L ++ + A L +
Sbjct: 98 AHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ------AHGLTP-------------E 138
Query: 578 KVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQ 637
+V + G +T +A L +A ++ + L + +
Sbjct: 139 QVVAIASHDGGKQALETVQALLPVL---CQAHGLTPEQVVAIASNGGGKQALETVQRLLP 195
Query: 638 LCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVG 697
+ + +A NG +L ++ L +L +
Sbjct: 196 VLCQAHGL-TPQQVVAIASNGGGKQAL----------------ETVQRLLPVLCQ----- 233
Query: 698 SISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPF 757
+ L +A S G + A P
Sbjct: 234 AHG-------LTPQQVVA--------IASNGGGKQALETVQRLLPVLCQAHGLT----PQ 274
Query: 758 AAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQ 817
+ + + QAL + + A L A++ + + + L
Sbjct: 275 QVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC 334
Query: 818 RLVSI 822
+ +
Sbjct: 335 QAHGL 339
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 5e-10
Identities = 36/336 (10%), Positives = 79/336 (23%), Gaps = 43/336 (12%)
Query: 494 CYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL 553
+ + R + A E +D L A H + L
Sbjct: 6 HHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKI-----AKRGGVTAVEAVHAWRNAL 60
Query: 554 NSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISS 613
A + + ++V + G +T + L + A ++
Sbjct: 61 TGAP-------LNL-------TPEQVVAIASHDGGKQALETVQRLLPVLCQ---AHGLTP 103
Query: 614 CSEKLLEMKADALYMLRKYEEAIQLCEHTL------PVAEKNFASVLADNGSVTYSLARL 667
+ L + + + VA + +V L L
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVL 163
Query: 668 WRW-RLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKS 726
+ L + I L+ +++ + + L +A S
Sbjct: 164 CQAHGLTPEQVVAIASNGGGKQALETVQR--LLPVLCQAHGLTPQQVVA--------IAS 213
Query: 727 AGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAM 786
G + A P + + QAL + + A
Sbjct: 214 NGGGKQALETVQRLLPVLCQAHGLT----PQQVVAIASNGGGKQALETVQRLLPVLCQAH 269
Query: 787 ALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
L A++ + + + + L + +
Sbjct: 270 GLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGL 305
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 31/308 (10%), Positives = 75/308 (24%), Gaps = 72/308 (23%)
Query: 542 IENAQHYYH--------KLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQK 593
+E+ H++ LL A + + ++ L+ A++ G + +
Sbjct: 1 LEHHHHHHQWSGARALEALLTVAGEL-RGPPLQLDTGQLLKIAKR--------GGVTAVE 51
Query: 594 TSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASV 653
A +AL L+++ + L + + + +
Sbjct: 52 AVHAWRNALT--GAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGL-TPQQVVA 108
Query: 654 LADNGSVTYSLARL------------------WRWRLISKSYFCIGKLEVALDLLQKL-- 693
+A + +L + + ++ L +L +
Sbjct: 109 IASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHG 168
Query: 694 ---EQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALST 750
EQV +I+ G + A
Sbjct: 169 LTPEQVVAIASN-------------------------GGGKQALETVQRLLPVLCQAHGL 203
Query: 751 NIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYT 810
P + + QAL + + A L A++ + +
Sbjct: 204 T----PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 259
Query: 811 QAASDLQR 818
+ L +
Sbjct: 260 RLLPVLCQ 267
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 7e-08
Identities = 23/236 (9%), Positives = 51/236 (21%), Gaps = 37/236 (15%)
Query: 424 QNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSET 483
+ V + T G + Q
Sbjct: 289 LETVQRLLPVLCQAHGLTPQQVVA---IASNGGGKQALETVQRLLPVLCQAHG------- 338
Query: 484 AGCCIKP-LVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEI 542
+ P V+ ++ + +L ++ L A + P + L +
Sbjct: 339 ----LTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETV 394
Query: 543 ENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602
+ + A L ++V + G +T + L
Sbjct: 395 QRLLPVLCQ------AHGLT-------------PEQVVAIASHDGGKQALETVQRLLPVL 435
Query: 603 ERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNG 658
+ A ++ + L + + L + LA G
Sbjct: 436 CQ---AHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACLG 488
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 7e-20
Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 11/115 (9%)
Query: 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCS 783
K GN+A+K + A++HY A + P N+AA G C
Sbjct: 7 EKELGNDAYKKKDFDTALKHYDKAKELD----PTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 784 LAMALDEN-------YTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKA 831
A+ + KA +R + Y A + ++ K
Sbjct: 63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 8e-14
Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 25/137 (18%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
+ GN AYK + A Y + P + T +N+AA G
Sbjct: 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTY----------ITNQAAVYFEKGDY 54
Query: 509 REALEDCMMAATVDPNFL-------KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCL 561
+ E C A V K Y R + + ++A H+Y+K ++
Sbjct: 55 NKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNK------SLAE 108
Query: 562 DRRITIEAADGLQKAQK 578
R T + Q+A+K
Sbjct: 109 HR--TPDVLKKCQQAEK 123
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 2e-19
Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 14/153 (9%)
Query: 711 SMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALS--------------TNIESRP 756
S + ++++ + GNE F Y EA++ Y AL+ +E
Sbjct: 1 SNAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDR 60
Query: 757 FAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDL 816
+ N + +G + +A S + +E KA+ RRA +A DL
Sbjct: 61 KNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDL 120
Query: 817 QRLVSILENQSAEKAKQSRSPGRTISSRDLRQA 849
+ L+ ++ A++ + + +
Sbjct: 121 KLLLRNHPAAASVVAREMKIVTERRAEKKADSR 153
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 1e-13
Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 8/116 (6%)
Query: 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVP-------LSETAGCCIKPL-VLCYSN 497
++ E R +GN+ + + EA D Y + + E + + Y+N
Sbjct: 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYAN 68
Query: 498 RAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL 553
+ +++G + EA E + K R AK + +++ A+ LL
Sbjct: 69 MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 7e-19
Identities = 77/423 (18%), Positives = 138/423 (32%), Gaps = 90/423 (21%)
Query: 424 QNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSET 483
FEAAE + + + L + ++ L + F T I
Sbjct: 12 AGDFEAAERHCMQL---WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK------- 61
Query: 484 AGCCIKP-LVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEI 542
P L YSN G+++EA+E A + P+F+ Y+ A + G++
Sbjct: 62 ----QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM 117
Query: 543 ENAQHYYHKL--LNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAAS- 599
E A Y N + L+ ++ E C K +E + + A +
Sbjct: 118 EGAVQAYVSALQYNPDLYCVRSDLGNL-----LKALGRLEEAKACYLKAIETQPNFAVAW 172
Query: 600 -------SALERINEALSISSCSEKLLEMK----------ADALYMLRKYEEAIQLCEHT 642
+A I A+ EK + + + L R ++ A+
Sbjct: 173 SNLGCVFNAQGEIWLAI---HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229
Query: 643 L---PVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSI 699
L P N A V +LA + Y+ G +++A+D ++ +I
Sbjct: 230 LSLSP----NHAVVH-------GNLACV---------YYEQGLIDLAIDTYRR-----AI 264
Query: 700 SDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAA 759
L+ A + + N + G EA + Y AL P A
Sbjct: 265 E-------LQPHFPDA--------YCNLANALKEKGSVAEAEDCYNTALRLC----PTHA 305
Query: 760 ICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRL 819
N A + G I +A+ A+ + + A S A++ + +A +
Sbjct: 306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365
Query: 820 VSI 822
+ I
Sbjct: 366 IRI 368
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 1e-16
Identities = 57/379 (15%), Positives = 106/379 (27%), Gaps = 93/379 (24%)
Query: 454 RGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALE 513
++ Y+ + AE Q P + ++ R+ +
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGV----------LLLLSSIHFQCRRLDRSAH 54
Query: 514 DCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL----NSAAAVCLDRRITIEA 569
+A +P + Y + G+++ A +Y L +
Sbjct: 55 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG----------- 103
Query: 570 ADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYML 629
YIN + L+ E A A AL + + + L L
Sbjct: 104 ------------YINLAAALVAAGDMEGAVQAYVS---ALQYNPDLYCVRSDLGNLLKAL 148
Query: 630 RKYEEAIQLCEHTL------PVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKL 683
+ EEA + VA N V G++
Sbjct: 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA-----------------------QGEI 185
Query: 684 EVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEH 743
+A+ +K +++ L+ + A + + GN ++ + AV
Sbjct: 186 WLAIHHFEK-----AVT-------LDPNFLDA--------YINLGNVLKEARIFDRAVAA 225
Query: 744 YTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803
Y ALS + P A+ N A G I AI A+ L ++ A A
Sbjct: 226 YLRALSLS----PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL 281
Query: 804 EMIRDYTQAASDLQRLVSI 822
+ +A + +
Sbjct: 282 KEKGSVAEAEDCYNTALRL 300
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 5e-14
Identities = 54/329 (16%), Positives = 87/329 (26%), Gaps = 78/329 (23%)
Query: 495 YSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL- 553
A G A CM +P+ V + + H ++ + H+ +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 554 ---NSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALS 610
A A Y N E+ + A AL
Sbjct: 62 QNPLLAEA-----------------------YSNLGNVYKERGQLQEAIEHYRH---ALR 95
Query: 611 ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRW 670
+ A AL E A+Q L + N D V L L
Sbjct: 96 LKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL---QYN-----PDLYCVRSDLGNL--- 144
Query: 671 RLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE 730
+G+LE A K +I + + ++A + G
Sbjct: 145 ------LKALGRLEEAKACYLK-----AIE-------TQPNFAVA--------WSNLGCV 178
Query: 731 AFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDE 790
G A+ H+ A + P + N L+ A+A A++L
Sbjct: 179 FNAQGEIWLAIHHFEKA----VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 791 NYTKAVSRRA-ALHEM------IRDYTQA 812
N+ A +E I Y +A
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRA 263
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 2e-09
Identities = 47/299 (15%), Positives = 85/299 (28%), Gaps = 73/299 (24%)
Query: 529 YMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGK 588
M A G+ E A+ + +L ++ T +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLW--------------------RQEPDNTGVLLLLSS 41
Query: 589 LLEQ--KTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTL--- 643
+ Q + + A+ + + + + +EAI+ H L
Sbjct: 42 IHFQCRRLDRS----AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK 97
Query: 644 PVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRY 703
P +F +LA + G +E A+ ++
Sbjct: 98 P----DFIDGY-------INLA---------AALVAAGDMEGAVQAYVS-----ALQ--- 129
Query: 704 GSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFC 763
+ GN GR EA Y A+ T P A+ +
Sbjct: 130 ----YNPDLYCV--------RSDLGNLLKALGRLEEAKACYLKAIETQ----PNFAVAWS 173
Query: 764 NRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
N A G+I AI A+ LD N+ A + + R + +A + R +S+
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-06
Identities = 35/217 (16%), Positives = 59/217 (27%), Gaps = 50/217 (23%)
Query: 454 RGNQAYKN-NNLTEAEDFYTQGINSVPLSETAGCCIKP-LVLCYSNRAATRISLGRMREA 511
GN K A Y + ++ + P + + N A G + A
Sbjct: 209 LGN-VLKEARIFDRAVAAYLRALS-----------LSPNHAVVHGNLACVYYEQGLIDLA 256
Query: 512 LEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL----NSAAAVCLDRRITI 567
++ A + P+F Y A G + A+ Y+ L A +
Sbjct: 257 IDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS--------- 307
Query: 568 EAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALY 627
N + EQ E A + AL + A L
Sbjct: 308 --------------LNNLANIKREQGNIEEAVRLYRK---ALEVFPEFAAAHSNLASVLQ 350
Query: 628 MLRKYEEAIQLCEHTL------PVAEKNFASVLADNG 658
K +EA+ + + A N + L +
Sbjct: 351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 7e-04
Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 19/121 (15%)
Query: 424 QNKFEAAEEVKQRTVS--PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLS 481
+ AE+ + PT A + N + N+ EA Y + +
Sbjct: 284 KGSVAEAEDCYNTALRLCPTHA-----DSLNNLANIKREQGNIEEAVRLYRKALE----- 333
Query: 482 ETAGCCIKP-LVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLG 540
+ P +SN A+ G+++EAL A + P F Y +
Sbjct: 334 ------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
Query: 541 E 541
+
Sbjct: 388 D 388
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 8e-19
Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 11/117 (9%)
Query: 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCS 783
K GN A+K + +A HY A+ + P + N+AA + A+ + C
Sbjct: 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD----PSNITFYNNKAAVYFEEKKFAECVQFCE 66
Query: 784 LAMALDEN-------YTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQ 833
A+ + KA+SR + D + A R +S + K +
Sbjct: 67 KAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVK 123
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 2e-13
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 25/137 (18%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
+ GN AYK + +A Y + I P + T Y+N+AA +
Sbjct: 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITF----------YNNKAAVYFEEKKF 58
Query: 509 REALEDCMMAATVDPNFL-------KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCL 561
E ++ C A V K RA ++ A ++H+ ++
Sbjct: 59 AECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHR------SLSE 112
Query: 562 DRRITIEAADGLQKAQK 578
R E +++ +K
Sbjct: 113 FR--DPELVKKVKELEK 127
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 2e-17
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSL 784
K+ N+ FK+ Y A++ Y+ A IE P AI + NR+ A A+ D +
Sbjct: 10 KTQANDYFKAKDYENAIKFYSQA----IELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 785 AMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAK 832
A+ LD+ Y K RRAA + + + A D + +V + + K K
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMK 113
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 1e-12
Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 10/111 (9%)
Query: 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISL 505
+ E + + N +K + A FY+Q I P + Y NR+ +
Sbjct: 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI----------YYGNRSLAYLRT 53
Query: 506 GRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSA 556
AL D A +D ++K Y R A ++ LG+ A Y ++
Sbjct: 54 ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 104
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 3e-17
Identities = 25/124 (20%), Positives = 41/124 (33%), Gaps = 12/124 (9%)
Query: 711 SMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALS------------TNIESRPFA 758
+ V++ K GNE FK EA+ Y AL + +
Sbjct: 28 DYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87
Query: 759 AICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQR 818
C N A AI S + +D+N KA+ + + +A +L +
Sbjct: 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147
Query: 819 LVSI 822
S+
Sbjct: 148 AASL 151
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 2e-14
Identities = 24/175 (13%), Positives = 57/175 (32%), Gaps = 28/175 (16%)
Query: 415 EENKYEDKVQNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQG 474
+++ Y+ + K ++A ++K+ GN+ +K N + EA Y +
Sbjct: 23 KKSIYDYTDEEKVQSAFDIKEE------------------GNEFFKKNEINEAIVKYKEA 64
Query: 475 IN------SVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKV 528
++ + C N A +A++ +D N +K
Sbjct: 65 LDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKA 124
Query: 529 YMRAAKCHLVLGEIENAQHYYHKLL----NSAAAVCLDRRITIEAADGLQKAQKV 579
+ ++ G +E A+ +K N+ + + +K +
Sbjct: 125 LYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLT 179
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 8e-17
Identities = 50/228 (21%), Positives = 82/228 (35%), Gaps = 21/228 (9%)
Query: 601 ALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTL------PVAEKNFASVL 654
A+E N+A + L +A A Y +YE AI + K +
Sbjct: 24 AIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82
Query: 655 ADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSL 714
A G+ + L L + + + L L+ E+ + + +
Sbjct: 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEK--ELKKAEAEAYVNPEKAE 140
Query: 715 AGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQ 774
+ G E F + AV+ YT + P A + NRAAAL L
Sbjct: 141 E--------ARLEGKEYFTKSDWPNAVKAYTEMIKRA----PEDARGYSNRAAALAKLMS 188
Query: 775 IADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
+AIADC+ A+ D N+ +A R+A +++Y A L +
Sbjct: 189 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 4e-13
Identities = 32/209 (15%), Positives = 59/209 (28%), Gaps = 28/209 (13%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
+ + GN+ YK EA + Y + + + +NRAA G
Sbjct: 6 DKEKAEGNKFYKARQFDEAIEHYNKAWE-----------LHKDITYLNNRAAAEYEKGEY 54
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL----NSAAA-----V 559
A+ A Y +K +G + K + S +
Sbjct: 55 ETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADI 114
Query: 560 CLDRRITIEAADGLQKA-----QKVTEYINCSGKLLEQKTSEAASSALERINEALSISSC 614
R + + +K E + + A++ E + +
Sbjct: 115 LTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN---AVKAYTEMIKRAPE 171
Query: 615 SEKLLEMKADALYMLRKYEEAIQLCEHTL 643
+ +A AL L + EAI C +
Sbjct: 172 DARGYSNRAAALAKLMSFPEAIADCNKAI 200
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 5e-12
Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRP-FAAICFCNRAAALQALGQIADAIADC 782
K+ GN+ +K+ ++ EA+EHY A + NRAAA G+ AI+
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAWELH----KDITY--LNNRAAAEYEKGEYETAISTL 61
Query: 783 SLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAE 829
+ A+ + I + DL++ + + E
Sbjct: 62 NDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 4e-11
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 12/104 (11%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKP-LVLCYSNRAATRISLGR 507
E RL G + + ++ A YT+ I P YSNRAA L
Sbjct: 140 EEARLEGKEYFTKSDWPNAVKAYTEMIK-----------RAPEDARGYSNRAAALAKLMS 188
Query: 508 MREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHK 551
EA+ DC A DPNF++ Y+R A + + E +A
Sbjct: 189 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 25/194 (12%), Positives = 52/194 (26%), Gaps = 41/194 (21%)
Query: 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMRE 510
+++ + N + I L A L +
Sbjct: 75 YKVISKSFARIGNAYHKLGDLKKTIE-----------YYQKSLTEHRTADILTKLRNAEK 123
Query: 511 ALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL----NSAAAVCLDRRIT 566
L+ A V+P + K + + NA Y +++ A
Sbjct: 124 ELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG-------- 175
Query: 567 IEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADAL 626
Y N + L + + A+ N+A+ + KA A
Sbjct: 176 ---------------YSNRAAALAKLMSFPE---AIADCNKAIEKDPNFVRAYIRKATAQ 217
Query: 627 YMLRKYEEAIQLCE 640
+++Y A++ +
Sbjct: 218 IAVKEYASALETLD 231
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 79.2 bits (195), Expect = 6e-16
Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 12/134 (8%)
Query: 710 SSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALS-----------TNIESRPFA 758
M+ + K G FK G+Y +A+ Y +S +++
Sbjct: 136 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR 195
Query: 759 AICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQR 818
N A L + AI C+ A+ LD N K +SRR H + D+ A +D Q+
Sbjct: 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQK 255
Query: 819 LVSIL-ENQSAEKA 831
++ + N++A+
Sbjct: 256 VLQLYPNNKAAKTQ 269
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 3e-13
Identities = 35/171 (20%), Positives = 64/171 (37%), Gaps = 11/171 (6%)
Query: 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVP----LSETAGCCIKPL-VLCYSNRAA 500
E + + RG +K +A Y + ++ + S + L + + N A
Sbjct: 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204
Query: 501 TRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL----NSA 556
+ L A+E C A +D N K R + HL + + E A+ + K+L N+
Sbjct: 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264
Query: 557 AAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINE 607
AA L + +K+ Y N +L E++ A ++
Sbjct: 265 AAKTQLAVCQQRIRRQLAREKKL--YANMFERLAEEENKAKAEASSGDHPT 313
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 2e-15
Identities = 49/384 (12%), Positives = 109/384 (28%), Gaps = 65/384 (16%)
Query: 431 EEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKP 490
+ + QE ++ + Y N + + + P
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFH--------- 55
Query: 491 LVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGE-IENAQHYY 549
C T + L + E + P+ + +L++G E+A+ Y
Sbjct: 56 -ASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYL 114
Query: 550 HKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEAL 609
K A L++ A +I + + A +A A
Sbjct: 115 SK------ATTLEKTYG-PA------------WIAYGHSFAVESEHDQAMAAYFT---AA 152
Query: 610 SISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWR 669
+ + + + A + L +A V+ + G V +
Sbjct: 153 QLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQN----- 206
Query: 670 WRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGN 729
G+ + A ++ E +++ + + + G+
Sbjct: 207 -----------GEWKTAEKWFLD-----AL------EKIKAIGNEVTVDKWEPLLNNLGH 244
Query: 730 EAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALD 789
K +Y EA++++ A + P A + +G +A+ A+ L
Sbjct: 245 VCRKLKKYAEALDYHRQA----LVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300
Query: 790 ENYTKAVSRRAALHEMIRDYTQAA 813
+ T +V+ EM ++A
Sbjct: 301 RDDTFSVTMLGHCIEMYIGDSEAY 324
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 39/338 (11%), Positives = 86/338 (25%), Gaps = 73/338 (21%)
Query: 495 YSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL- 553
+ A + + + DP + L + + HKL+
Sbjct: 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD 84
Query: 554 ---NSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQ-KTSEAASSALERINEAL 609
++ + + L +E A L + A
Sbjct: 85 LYPSNPVS-----------------------WFAVGCYYLMVGHKNEHARRYLSK---AT 118
Query: 610 SISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWR 669
++ + + ++++A+ A+ L L
Sbjct: 119 TLEKTYGPAWIAYGHSFAVESEHDQAMAAYFT---------AAQLMKG----CHLP---- 161
Query: 670 WRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGN 729
I Y ++A + SI+ + H G
Sbjct: 162 MLYIGLEYGLTNNSKLAERFFSQ---ALSIAPED----------------PFVMH-EVGV 201
Query: 730 EAFKSGRYTEAVEHYTVALS-----TNIESRPFAAICFCNRAAALQALGQIADAIADCSL 784
AF++G + A + + AL N + N + L + A+A+
Sbjct: 202 VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ 261
Query: 785 AMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
A+ L S +H ++ ++ A + +
Sbjct: 262 ALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 26/133 (19%), Positives = 44/133 (33%), Gaps = 8/133 (6%)
Query: 424 QNKFEAAEEVKQRTVS--PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLS 481
N + AE + +S P + G A++N AE ++ + +
Sbjct: 172 TNNSKLAERFFSQALSIAPEDP-----FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI 226
Query: 482 ETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGE 541
+ +N L + EAL+ A + P Y H ++G
Sbjct: 227 GNEVT-VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN 285
Query: 542 IENAQHYYHKLLN 554
ENA Y+H L
Sbjct: 286 FENAVDYFHTALG 298
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 6e-08
Identities = 26/209 (12%), Positives = 53/209 (25%), Gaps = 33/209 (15%)
Query: 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKP-LVLCYSNRAATRISLGRMR 509
W G+ + +A Y + L +
Sbjct: 128 WIAYGHSFAVESEHDQAMAAYFTAAQ-----------LMKGCHLPMLYIGLEYGLTNNSK 176
Query: 510 EALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEA 569
A A ++ P V GE + A+ ++ L A+ + +
Sbjct: 177 LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236
Query: 570 ------ADGLQKAQKVTEYINCSGKLLEQKTSEAA---------------SSALERINEA 608
+K +K E ++ + L A+ +A++ + A
Sbjct: 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296
Query: 609 LSISSCSEKLLEMKADALYMLRKYEEAIQ 637
L + + M + M EA
Sbjct: 297 LGLRRDDTFSVTMLGHCIEMYIGDSEAYI 325
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 6e-06
Identities = 25/255 (9%), Positives = 60/255 (23%), Gaps = 42/255 (16%)
Query: 601 ALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSV 660
+ I E++ + ++ A+ Y ++ +L + + +
Sbjct: 7 SETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASC-------- 58
Query: 661 TYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQ-----------VGSISDRYGSEILE 709
+ + + K L KL VG G +
Sbjct: 59 ---------LPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEH 109
Query: 710 SSMSLAGTVRAL-LHHKSA------GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICF 762
+ L+ +A L G+ + +A+ Y A +
Sbjct: 110 ARRYLS---KATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM----KGCHLPM 162
Query: 763 CNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
A S A+++ + + ++ A +
Sbjct: 163 LYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222
Query: 823 LENQSAEKAKQSRSP 837
++ E P
Sbjct: 223 IKAIGNEVTVDKWEP 237
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 9e-14
Identities = 59/464 (12%), Positives = 124/464 (26%), Gaps = 100/464 (21%)
Query: 414 EEENKYED-----KVQNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAE 468
+ ++ N F E+ + + + M LRG +N A+
Sbjct: 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220
Query: 469 DFYTQGINSVPLSETAGCCI---------------------------KPLVLCYSNRAAT 501
+ Y + + A + +
Sbjct: 221 ECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLN 280
Query: 502 RISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL--NSAAAV 559
+ S ED + + + + A V + K+L +
Sbjct: 281 KTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD 340
Query: 560 CLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAAS--------SALERINEALSI 611
+ L ++ + + S L+++ +A + + +I+EA
Sbjct: 341 VYPLHLAS-----LHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARR- 394
Query: 612 SSCSEKLLEMKAD----------ALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVT 661
K M + + ++++AI A+ L
Sbjct: 395 --YFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTT---------AARLFQG---- 439
Query: 662 YSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRAL 721
L + + + +G + +A + LQ S +L L
Sbjct: 440 THLP----YLFLGMQHMQLGNILLANEYLQS------------------SYALFQYDPLL 477
Query: 722 LHHKSAGNEAFKSGRYTEAVEHYTVALS---TNIESRPFAAICFCNRAAALQALGQIADA 778
L+ G AF A+ H+ AL + A + N A + L A
Sbjct: 478 LNEL--GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535
Query: 779 IADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
I + + L N + A ++ + A + L ++I
Sbjct: 536 IDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 1e-13
Identities = 45/384 (11%), Positives = 106/384 (27%), Gaps = 71/384 (18%)
Query: 422 KVQNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLS 481
+++ AE+ +++ ++ + + + + + T+ + P +
Sbjct: 283 SHEDELRRAEDYLSSI----NGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN 338
Query: 482 ETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGE 541
+ Y A+ G + P ++ +L + +
Sbjct: 339 ----------LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNK 388
Query: 542 IENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSA 601
I A+ Y+ K + +D + A +I + + + A SA
Sbjct: 389 ISEARRYFSK------SSTMDPQFG-PA------------WIGFAHSFAIEGEHDQAISA 429
Query: 602 LERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVT 661
A + + L A + + + + + +L + G V
Sbjct: 430 YTT---AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVV- 484
Query: 662 YSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRAL 721
F ++ A++ Q ++ +++ + S A
Sbjct: 485 ---------------AFNKSDMQTAINHFQN-----AL------LLVKKTQSNEKPWAAT 518
Query: 722 LHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIAD 781
+ G+ K Y A++ L + A A AI
Sbjct: 519 WANL--GHAYRKLKMYDAAIDALNQGLLLS----TNDANVHTAIALVYLHKKIPGLAITH 572
Query: 782 CSLAMALDENYTKAVSRRA-ALHE 804
++A+ N A AL E
Sbjct: 573 LHESLAISPNEIMASDLLKRALEE 596
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 1e-12
Identities = 42/325 (12%), Positives = 94/325 (28%), Gaps = 22/325 (6%)
Query: 503 ISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLD 562
+ + + A + N + A + + G+ A+ LL
Sbjct: 95 LMQQQYKCAAFVGEKVLDITGNPNDAFWLA-QVYCCTGDYARAKC----LLTKEDLYNRS 149
Query: 563 RRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMK 622
AA L K +N G+ + E ++ L + + + + + ++
Sbjct: 150 SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEA---SMCYLR 206
Query: 623 ADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGK 682
L ++ A + + L V K + + D + L W L+ K +
Sbjct: 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAF--DQLVSNHLLTADEEWDLVLKLNYSTYS 264
Query: 683 LEVALDLLQKLEQVGSISDRYGS-----EILESSMSLAGTVRALLHHKSAGNEAFKSGRY 737
E A L + + + L S L + LL + F R+
Sbjct: 265 KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLL---CKADTLFVRSRF 321
Query: 738 TEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVS 797
+ + T L + P+ + A+L G+ + +
Sbjct: 322 IDVLAITTKILEID----PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWL 377
Query: 798 RRAALHEMIRDYTQAASDLQRLVSI 822
+ + ++A + ++
Sbjct: 378 AVGIYYLCVNKISEARRYFSKSSTM 402
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 8e-12
Identities = 51/400 (12%), Positives = 99/400 (24%), Gaps = 73/400 (18%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
L G + A Q IK R +L
Sbjct: 168 GALNLLGETNPFRKDEKNANKLLMQDGG-----------IKLEASMCYLRGQVYTNLSNF 216
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE 568
A E A VD + + + HL+ + E + +
Sbjct: 217 DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDL---------VLKLNYSTYSKED 267
Query: 569 AADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYM 628
AA + E E +++ S LL KAD L++
Sbjct: 268 AAF-------LRSLYMLKLNKTSH---EDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317
Query: 629 LRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARL------------------WRW 670
++ + + + L + V + + + W
Sbjct: 318 RSRFIDVLAITTKIL-EIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTW 376
Query: 671 RLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE 730
+ Y C+ K+ A K S + ++ A +
Sbjct: 377 LAVGIYYLCVNKISEARRYFSK-----SST-------MDPQFGPA--------WIGFAHS 416
Query: 731 AFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDE 790
G + +A+ YT A + + LG I A + AL +
Sbjct: 417 FAIEGEHDQAISAYTTAARLF----QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472
Query: 791 NYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEK 830
++ + D A + Q + +++ + +
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 5e-06
Identities = 46/241 (19%), Positives = 79/241 (32%), Gaps = 32/241 (13%)
Query: 590 LEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649
L TS S ER + S + L + DAL M ++Y+ A + E L
Sbjct: 59 LANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDAL-MQQQYKCAAFVGEKVL------ 111
Query: 650 FASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVG-SISDRYGSEIL 708
+ N + + LA + Y C G A LL K + S + RY
Sbjct: 112 ---DITGNPNDAFWLA---------QVYCCTGDYARAKCLLTKEDLYNRSSACRY----- 154
Query: 709 ESSMSLAGTV-RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAA 767
LA L + A N ++ + + ++ L + + A++C R
Sbjct: 155 -----LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMC-YLRGQ 208
Query: 768 ALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827
L A A+ +D +A + + H + D + + +
Sbjct: 209 VYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDA 268
Query: 828 A 828
A
Sbjct: 269 A 269
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 6e-13
Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 13/125 (10%)
Query: 711 SMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALS-------------TNIESRPF 757
M++ + A K GN FK + EA++ Y +A++ +
Sbjct: 169 DMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAV 228
Query: 758 AAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQ 817
C N AA L L + +AI C++ + +E KA+ RR + A D +
Sbjct: 229 KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFR 288
Query: 818 RLVSI 822
+
Sbjct: 289 KAQKY 293
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 1e-09
Identities = 33/165 (20%), Positives = 55/165 (33%), Gaps = 13/165 (7%)
Query: 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGIN------SVPLSETAGCCIKPL-VLCYSN 497
+ ++ GN +K L EA Y I L + C+ N
Sbjct: 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLN 235
Query: 498 RAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL---- 553
AA I L R EA+ C + T + K R K LG++++A+ + K
Sbjct: 236 IAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295
Query: 554 NSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAA 598
+ A R + + QK +++ Y E +
Sbjct: 296 DDKAIRRELRALAEQEKALYQKQKEM--YKGIFKGKDEGGAKSKS 338
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 2e-12
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 4/108 (3%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
G +++G++ +A + + + + A F A Q+LG A+ S
Sbjct: 25 GFNQYQAGKWDDAQKIFQALCMLD----HYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 788 LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSR 835
+D N + A H + D A S ++ Q A +A +R
Sbjct: 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAAR 128
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 8e-11
Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 10/137 (7%)
Query: 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRIS 504
++T E G Y+ +A+ + + A R S
Sbjct: 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARY----------FLGLGACRQS 64
Query: 505 LGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRR 564
LG +AL+ A +D N + AA+CHL LG+++ A+ ++ AAA
Sbjct: 65 LGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124
Query: 565 ITIEAADGLQKAQKVTE 581
+ A L+ +
Sbjct: 125 LAARAGAMLEAVTARKD 141
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 15/89 (16%), Positives = 24/89 (26%), Gaps = 8/89 (8%)
Query: 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCS 783
G G Y +A++ Y+ + + A LG + A +
Sbjct: 55 FLGLGACRQSLGLYEQALQSYSYGALMD----INEPRFPFHAAECHLQLGDLDGAESGFY 110
Query: 784 LAMALDENYTKAVSRRAALHEMIRDYTQA 812
A AL AL +A
Sbjct: 111 SARALAAAQ----PAHEALAARAGAMLEA 135
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 2e-12
Identities = 39/425 (9%), Positives = 94/425 (22%), Gaps = 61/425 (14%)
Query: 424 QNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSET 483
+ V + T + Q P
Sbjct: 307 LETVQRLLPVLCQAHGLTPDQVVA---IASHDGGKQALETVQRLLPVLCQAHGLTPDQVV 363
Query: 484 AGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIE 543
A ++ + +L ++ L A + P+ + L ++
Sbjct: 364 A----------IASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQA-LETVQ 412
Query: 544 NAQHYYHKL----------LNSAAAVCLDRRITIEAADGLQKAQKVT-----EYINCSGK 588
+ + S L + +T + G
Sbjct: 413 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGG 472
Query: 589 LLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEK 648
+T + L +A ++ + L + + +
Sbjct: 473 KQALETVQQLLPVL---CQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAH-GLTP 528
Query: 649 NFASVLADNGSVTYSLARLWRW--------RLISKSYFCIGKLEVALDLLQKLEQVGSIS 700
+ +A NG +L + R L I L+ ++++ +
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 588
Query: 701 DR---YGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPF 757
+ + + S G +AL + A P
Sbjct: 589 CQAHGLTQVQVVAIASNIGGKQAL-------------ETVQRLLPVLCQA----HGLTPA 631
Query: 758 AAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQ 817
+ + QAL + + A L + A++ + + + L
Sbjct: 632 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 691
Query: 818 RLVSI 822
+ +
Sbjct: 692 QAHGL 696
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 69.7 bits (170), Expect = 4e-12
Identities = 38/417 (9%), Positives = 92/417 (22%), Gaps = 71/417 (17%)
Query: 424 QNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSET 483
+ V + T G + Q P
Sbjct: 273 LETVQRLLPVLCQAHGLTPDQVVA---IASHGGGKQALETVQRLLPVLCQAHGLTPDQVV 329
Query: 484 AGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIE 543
A ++ + +L ++ L A + P+ + L ++
Sbjct: 330 A----------IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 379
Query: 544 NAQHYYHKL--LNSAAAVCLDRRITIEAADGLQKA------------QKVTEYINCSGKL 589
+ L V + +A + +Q+ +V + G
Sbjct: 380 RLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGK 439
Query: 590 LEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649
+T + L + + ++ + L ++ + +
Sbjct: 440 QALETVQRL---LPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAH------ 490
Query: 650 FASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILE 709
+T + + ++ L +L Q ++
Sbjct: 491 ---------GLTPDQVVAIASNIGG--KQALATVQRLLPVL---CQAHGLTPDQ------ 530
Query: 710 SSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAAL 769
V A S G + A P + +
Sbjct: 531 --------VVA---IASNGGGKQALETVQRLLPVLCQAHGLT----PDQVVAIASNGGGK 575
Query: 770 QALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826
QAL + + A L + A++ + + + L + + Q
Sbjct: 576 QALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ 632
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 2e-11
Identities = 37/433 (8%), Positives = 88/433 (20%), Gaps = 85/433 (19%)
Query: 424 QNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVP---- 479
+ V + T G + Q P
Sbjct: 341 LETVQRLLPVLCQAHGLTPDQVVA---IASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 397
Query: 480 -------------LSETAGCCIKPLVLC------YSNRAATRISLGRMREALEDCMMAAT 520
+ + L ++ + +L ++ L
Sbjct: 398 AIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHG 457
Query: 521 VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKL--LNSAAAVCLDRRITI--------EAA 570
+ P + L ++ + L V + I
Sbjct: 458 LTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLL 517
Query: 571 DGLQKAQKVT-----EYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADA 625
L +A +T + G +T + L + A ++ +
Sbjct: 518 PVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ---AHGLTPDQVVAIASNGGG 574
Query: 626 LYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEV 685
L + + + + +A N +L ++
Sbjct: 575 KQALETVQRLLPVLCQAH-GLTQVQVVAIASNIGGKQAL----------------ETVQR 617
Query: 686 ALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYT 745
L +L + + T ++ S +
Sbjct: 618 LLPVLCQ--------------------AHGLTPAQVVAIASHDGGKQALETVQRLLPVLC 657
Query: 746 VALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEM 805
A P + + QAL + + A L + A++ +
Sbjct: 658 QAHGLT----PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQA 713
Query: 806 IRDYTQAASDLQR 818
+ + L +
Sbjct: 714 LETVQRLLPVLCQ 726
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 3e-11
Identities = 37/379 (9%), Positives = 84/379 (22%), Gaps = 76/379 (20%)
Query: 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKP-LVLCYSNRAATRISLGRMR 509
+ Q + P V+ ++ + +L M+
Sbjct: 195 IASNNGGKQALETVQRLLPVLCQAHG-----------LTPAQVVAIASHDGGKQALETMQ 243
Query: 510 EALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEA 569
L A + P+ + L ++ +
Sbjct: 244 RLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAH---------------- 287
Query: 570 ADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYML 629
GL +V + G +T + L + A ++ + L
Sbjct: 288 --GL-TPDQVVAIASHGGGKQALETVQRLLPVLCQ---AHGLTPDQVVAIASHDGGKQAL 341
Query: 630 RKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDL 689
+ + + + + +A NG + ++ L
Sbjct: 342 ETVQRLLPVLCQAHGL-TPDQVVAIASNGGG----------------KQALETVQRLL-- 382
Query: 690 LQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALS 749
L Q ++ I + G +AL + A
Sbjct: 383 -PVLCQAHGLTPDQVVAI-----ASNGGKQAL-------------ETVQRLLPVLCQAHG 423
Query: 750 TNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDY 809
P + + QAL + + L A++ + +
Sbjct: 424 LT----PDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETV 479
Query: 810 TQAASDLQRLVSILENQSA 828
Q L + + +Q
Sbjct: 480 QQLLPVLCQAHGLTPDQVV 498
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 4e-10
Identities = 40/407 (9%), Positives = 92/407 (22%), Gaps = 77/407 (18%)
Query: 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMRE 510
+ + Q P A ++ + +L ++
Sbjct: 466 IASHDGGKQALETVQQLLPVLCQAHGLTPDQVVA----------IASNIGGKQALATVQR 515
Query: 511 ALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKL--LNSAAAVCLDRRITI- 567
L A + P+ + L ++ + L V +
Sbjct: 516 LLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGK 575
Query: 568 -------EAADGLQKAQKVT-----EYINCSGKLLEQKTSEAASSALERINEALSISSCS 615
L +A +T + G +T + L + A ++
Sbjct: 576 QALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQ---AHGLTPAQ 632
Query: 616 EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISK 675
+ L + + + + +A NG +L
Sbjct: 633 VVAIASHDGGKQALETVQRLLPVLCQAH-GLTPDQVVAIASNGGGKQAL----------- 680
Query: 676 SYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSG 735
++ L +L + L +A S
Sbjct: 681 -----ETVQRLLPVLCQAHG------------LTQEQVVA--------IASNNGGKQALE 715
Query: 736 RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKA 795
+ A P + + QAL + + A L A
Sbjct: 716 TVQRLLPVLCQAHGLT----PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVA 771
Query: 796 VSRRAALHEMIRDYTQAASDL--------QRLVSILENQSAEKAKQS 834
++ + + + L ++V+I N ++A ++
Sbjct: 772 IASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALET 818
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 1e-09
Identities = 45/456 (9%), Positives = 104/456 (22%), Gaps = 70/456 (15%)
Query: 424 QNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSET 483
+ V + T + Q P
Sbjct: 476 LETVQQLLPVLCQAHGLTPDQVVA---IASNIGGKQALATVQRLLPVLCQAHGLTPDQVV 532
Query: 484 AGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIE 543
A ++ + +L ++ L A + P+ + L ++
Sbjct: 533 A----------IASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 582
Query: 544 NAQHYYHKLL----------NSAAAVCLDRRITIEAADGLQKAQKVT-----EYINCSGK 588
+ S L +A +T + G
Sbjct: 583 RLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGG 642
Query: 589 LLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTL---PV 645
+T + L +A ++ + L + + +
Sbjct: 643 KQALETVQRLLPVL---CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQ- 698
Query: 646 AEKNFASVLADNGSVTYSLARLWRWRLISK-----------SYFCIGKLEVALDLLQKL- 693
+A N +L + R + + G + AL+ +Q+L
Sbjct: 699 ---EQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLL 755
Query: 694 -----------EQVGSISDRYGS----EILESSMSLAGTVRALLHHKSAGNEAFKSGRYT 738
QV +I+ G E ++ + + L + +
Sbjct: 756 PVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAI--ASNIGGK 813
Query: 739 EAVEHYTVALST---NIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKA 795
+A+E L + + QAL + + L + A
Sbjct: 814 QALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVA 873
Query: 796 VSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKA 831
++ + + + L + + +Q A
Sbjct: 874 IASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIA 909
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 2e-07
Identities = 32/286 (11%), Positives = 69/286 (24%), Gaps = 45/286 (15%)
Query: 543 ENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602
+ + + + AV R A L AQ V + +G +T + L
Sbjct: 157 QLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQ-VVAIASNNGGKQALETVQRLLPVL 215
Query: 603 ERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTY 662
+ A ++ + L + + + + +A N
Sbjct: 216 CQ---AHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAH-GLPPDQVVAIASNIGGKQ 271
Query: 663 SLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALL 722
+L ++ L +L + L +A
Sbjct: 272 AL----------------ETVQRLLPVLCQAHG------------LTPDQVVA------- 296
Query: 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADC 782
S G + A P + + QAL + +
Sbjct: 297 -IASHGGGKQALETVQRLLPVLCQAHGLT----PDQVVAIASHDGGKQALETVQRLLPVL 351
Query: 783 SLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSA 828
A L + A++ + + + L + + +Q
Sbjct: 352 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 397
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.5 bits (169), Expect = 4e-12
Identities = 98/714 (13%), Positives = 188/714 (26%), Gaps = 266/714 (37%)
Query: 329 HADGMNTDSHESGKYC-----------FASEVDGCKY---FTFSSLSSADGGLTLRKCKL 374
H M+ ++ E +Y F D CK S LS +
Sbjct: 3 HHHHMDFETGEH-QYQYKDILSVFEDAFVDNFD-CKDVQDMPKSILSKEE-------ID- 52
Query: 375 RKKSKKKVGNNSFVISPSPNDKV-----SFSHQASSSLCKTVNGEEENKYE---DKVQNK 426
++S + + + K V Y+ ++
Sbjct: 53 -----------HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK-- 99
Query: 427 FEAAEEVKQRTVSPTAAFQETCE-MWRLRGNQAYKNNNLTEAEDFYT--------QGINS 477
E +Q ++ T + E + ++ NQ + N++ + + + +
Sbjct: 100 ----TEQRQPSM-MTRMYIEQRDRLYN--DNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 478 VPLSETAGC---------CIKPLVLCYSNRAATRISLGRMREALEDCM-----MAATVDP 523
V + G C+ V C + ++L E + + +DP
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP-ETVLEMLQKLLYQIDP 211
Query: 524 NF--------------------LKVYMRA---AKCHLVLGEIENAQHYYHKLLNSAAAVC 560
N+ L+ +++ C LVL ++NA+ N+ C
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-----WNAFNLSC 266
Query: 561 LDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLE 620
+I + ++VT+++ S + + S L +E S+ K L+
Sbjct: 267 ---KILLTTRF-----KQVTDFL--SAATTTHISLDHHSMTLTP-DEVKSLLL---KYLD 312
Query: 621 MKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI 680
+ L E + T P A + D LA W+ ++
Sbjct: 313 CRPQDLP-----REVLT----TNPRRLSIIAESIRDG------LATWDNWKHVNCD---- 353
Query: 681 GKL----EVALDLLQKLEQVGSISDRYGS---------------EIL--ESSMSLAGTVR 719
KL E +L++L+ E + ++ + S V
Sbjct: 354 -KLTTIIESSLNVLEPAEY----RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 720 ALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAI 779
LH S + K + I
Sbjct: 409 NKLHKYSLVEKQPKESTIS----------------------------------------I 428
Query: 780 ADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGR 839
L + ALH I D + +
Sbjct: 429 PSIYL------ELKVKLENEYALHRSIVD-------------------------HYNIPK 457
Query: 840 TISSRDLRQAC----------RHLSSMEEDAKKGEP----LDFYLI----------LGVK 875
T S DL HL ++E + LDF +
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 876 AS--DTAADIKKAYRKAALKHHPDKRSEYDQ-EQEIRKATKESPQNSHYGRSSD 926
S +T +K Y+ + P +Y++ I + +N + +D
Sbjct: 518 GSILNTLQQLKF-YKPYICDNDP----KYERLVNAILDFLPKIEENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.5 bits (169), Expect = 4e-12
Identities = 94/619 (15%), Positives = 172/619 (27%), Gaps = 183/619 (29%)
Query: 225 FESQQNDNVSEMPSMVGAQKD-----ESSPTNTQHELGMSFTEFVI-PNWDPSCF-KASL 277
++ D++ V S + F E V+ N+ F + +
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK----FVEEVLRINYK---FLMSPI 98
Query: 278 YTEPNKKLEFSVKSKSIKDKRSKKTGGKSKQP-----------SLKQG-QKQRGSGNAVA 325
TE + S+ ++ ++R + L+Q + R + N +
Sbjct: 99 KTEQRQP---SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 326 SAEHADGMNTDSHESGKYCFASEVDGCKYFTFSSLSSADGG---LTLRKCKLRKKSKKKV 382
G+ SGK A +V C + D L L+ C + + +
Sbjct: 156 ---D--GVLG----SGKTWVALDV--CLSYKV--QCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 383 GNNSFVISPSPNDKVSFS-------HQASSSLCKTVNGEEENKYE------DKVQNKFEA 429
+ I P+ + S H + L + + + YE VQN
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL---KSKPYENCLLVLLNVQNA--- 256
Query: 430 AEEVKQRTVSPTAAFQETCEMWRL---R--------GNQAYKNNNLTEAEDFYTQGINSV 478
+ AF +C++ L R + +L T
Sbjct: 257 -KAWN--------AFNLSCKI--LLTTRFKQVTDFLSAATTTHISLDHHSMTLTP----- 300
Query: 479 PLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLV 538
E +K + E T +P ++ + A
Sbjct: 301 --DEVKSLLLK----------YLDCRPQDLPR--EVL----TTNP--RRLSIIAESIRDG 340
Query: 539 LGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCS---------GKL 589
L +N +H L + L+ +E A+ +K + S L
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLN---VLEPAE-YRKM-----FDRLSVFPPSAHIPTIL 391
Query: 590 LEQKTSEAASSALERINEALSISSCSEK--------------LLEMKADALYMLRK---- 631
L + S + + L S EK L++K + Y L +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 632 -YEEAIQLCEHTL--PVAEKNFASVLADNGSVTYSLARLW---RWRLISKSY----FCIG 681
Y L P ++ F S + + L + R L + F
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIG------HHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 682 KLEVA----------LDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEA 731
K+ L+ LQ+L+ Y I ++ V A+L E
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLK-------FYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 732 FKSGRYTEAVEHYTVALST 750
+YT+ + +AL
Sbjct: 559 LICSKYTDLLR---IALMA 574
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 5e-12
Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 5/107 (4%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
+ + GR EA + + + AA Q Q A ++A A
Sbjct: 43 AYDFYNKGRIEEAEVFFRFLCIYD----FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98
Query: 788 LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS-AEKAKQ 833
L +N V ++ +A + ++ ++ KA+
Sbjct: 99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQS 145
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 3e-11
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 16/145 (11%)
Query: 411 VNGEEENKYEDKVQNKFEAAEEVKQ-RTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAED 469
+N E V + + +K + + + Y + EAE
Sbjct: 3 LNITENESISTAVIDAINSGATLKDINAIPD-----DMMDDIYSYAYDFYNKGRIEEAEV 57
Query: 470 FYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVY 529
F+ + AA + ++A + +A + N
Sbjct: 58 FFRFLCIYDFYNVDY----------IMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107
Query: 530 MRAAKCHLVLGEIENAQHYYHKLLN 554
+C L L A+ + ++
Sbjct: 108 FHTGQCQLRLKAPLKAKECFELVIQ 132
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 1e-11
Identities = 60/348 (17%), Positives = 100/348 (28%), Gaps = 64/348 (18%)
Query: 498 RAATRISLGRMREALEDCMMA-ATVDPNFLKVYMRA----AKCHLVLGEIENAQHYYHKL 552
RA I+ G EA +A + P + + A + GE+ + +
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79
Query: 553 LNSA--------AAVCLDRRITIEAADG-LQKAQKVTEYINCSGKLLEQKTSEAASSALE 603
A A L ++ I A G LQ A + E+ A +
Sbjct: 80 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWE----------TQEK--------AFQ 121
Query: 604 RINEA-LSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTY 662
INE L E L+ ++A L+ + +EA + V ++
Sbjct: 122 LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM-- 179
Query: 663 SLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALL 722
L + R G L+ A L +LE + + I S A VR +
Sbjct: 180 -LIQCSLAR---------GDLDNARSQLNRLENLLGNGKYHSDWI-----SNANKVRVIY 224
Query: 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIA-- 780
+ G A + F + N A A LG+ A
Sbjct: 225 WQMT--------GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVL 276
Query: 781 DCSLAMALDENYTKAVSR----RAALHEMIRDYTQAASDLQRLVSILE 824
+ A ++R L+ + A L + +
Sbjct: 277 EELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 58.5 bits (141), Expect = 4e-09
Identities = 44/332 (13%), Positives = 91/332 (27%), Gaps = 45/332 (13%)
Query: 424 QNKFEAAEEVKQR--TVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLS 481
+ AE + + P F + G + LT + Q + ++
Sbjct: 27 DGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQ---TEQMA 83
Query: 482 ETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMA-ATVDPNFLKVYMRAAKCHLVLG 540
+ ++ + G ++ A E A ++ L+ +
Sbjct: 84 RQHDV-WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRA 142
Query: 541 EIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASS 600
++ A A IE Q Q++ L + + A S
Sbjct: 143 QLLWAWARL-----DEAEASARSG--IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARS 195
Query: 601 ALERINEALSISSCSEKLL----EMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLAD 656
L R+ L + +++ M A HT N +
Sbjct: 196 QLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL--- 252
Query: 657 NGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAG 716
+WR I+++ +G+ E A +L++L +
Sbjct: 253 ----------QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN------RNL 296
Query: 717 TVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748
+ L+ ++GR ++A AL
Sbjct: 297 LLLNQLYW--------QAGRKSDAQRVLLDAL 320
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 1e-11
Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 12/134 (8%)
Query: 697 GSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL-------- 748
G + + + + K+ GN FKS + A++ YT L
Sbjct: 199 GDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRA 258
Query: 749 ----STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHE 804
+ + +P A C N A + A+ C A+ +D + TKA+ RRA +
Sbjct: 259 AAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ 318
Query: 805 MIRDYTQAASDLQR 818
+++Y QA +DL++
Sbjct: 319 GLKEYDQALADLKK 332
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 6/103 (5%)
Query: 455 GNQAYKNNNLTEAEDFYTQGI-----NSVPLSETAGCCIKPL-VLCYSNRAATRISLGRM 508
GN +K+ N A YT+ + + + G ++P+ + C N A ++ +
Sbjct: 230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW 289
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHK 551
+ A++ C+ A +DP+ K R A+ L E + A K
Sbjct: 290 QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKK 332
|
| >2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 2e-11
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 855 SMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATK 913
++E+ KK D+Y ILG S +D+K+ Y+K L +HPDK+S + + +
Sbjct: 3 AVEQMPKK----DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQ 57
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 67.1 bits (163), Expect = 2e-11
Identities = 53/325 (16%), Positives = 102/325 (31%), Gaps = 49/325 (15%)
Query: 623 ADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGK 682
A+ EEA++L L V + + +LA + GK
Sbjct: 16 ANIKREQGNIEEAVRLYRKAL--------EVFPEFAAAHSNLASV---------LQQQGK 58
Query: 683 LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVE 742
L+ AL ++ + S + A + + GN + A++
Sbjct: 59 LQEALMHYKEA--------------IRISPTFAD------AYSNMGNTLKEMQDVQGALQ 98
Query: 743 HYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAAL 802
YT A+ N P A N A+ + G I +AIA A+ L ++ A A
Sbjct: 99 CYTRAIQIN----PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154
Query: 803 HEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTIS---SRDLRQACRHLSSMEED 859
+++ D+T +++LVSI+ +Q + S P ++ S R+A
Sbjct: 155 LQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCL 214
Query: 860 AKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQNS 919
K + ++ Y + +HP E +
Sbjct: 215 DKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYA 274
Query: 920 HYGRSSDAYGYACRSSRRQSRQDNW 944
+ + + +++
Sbjct: 275 LSPDDGTNFRV-----KVMAEANHF 294
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 57.5 bits (138), Expect = 2e-08
Identities = 31/239 (12%), Positives = 74/239 (30%), Gaps = 22/239 (9%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
+ + G+ EA+ HY A+ + P A + N L+ + + A+ + A+
Sbjct: 50 ASVLQQQGKLQEALMHYKEAIRIS----PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ 105
Query: 788 LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI-------LENQSAEKAKQSRSPGRT 840
++ + A S A++H+ + +A + + + + N +
Sbjct: 106 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165
Query: 841 ISSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRS 900
+ L +S + + +K + + + K +
Sbjct: 166 ERMKKL------VSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINV 219
Query: 901 EYDQEQEIRKATKESPQNSHYGRSSDAY-----GYACRSSRRQSRQDNWKTYGNSYSRW 954
+ E K K S G S + + +S D ++ + + S
Sbjct: 220 LHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPD 278
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 7e-08
Identities = 39/222 (17%), Positives = 65/222 (29%), Gaps = 26/222 (11%)
Query: 422 KVQNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLS 481
+ Q E A + ++ + F E + + L EA Y + I
Sbjct: 20 REQGNIEEAVRLYRKAL---EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR----- 71
Query: 482 ETAGCCIKP-LVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLG 540
I P YSN T + ++ AL+ A ++P F + A H G
Sbjct: 72 ------ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125
Query: 541 EIENAQHYYHKLL----NSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSE 596
I A Y L + A C LQ T+Y KL+ +
Sbjct: 126 NIPEAIASYRTALKLKPDFPDAYC--NLAHC-----LQIVCDWTDYDERMKKLVSIVADQ 178
Query: 597 AASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQL 638
+ L ++ S+ + ++ L
Sbjct: 179 LEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVL 220
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 2e-06
Identities = 31/187 (16%), Positives = 52/187 (27%), Gaps = 34/187 (18%)
Query: 495 YSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL- 553
+N A + G + EA+ A V P F + A G+++ A +Y + +
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71
Query: 554 ---NSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALS 610
A A Y N L E + + A R A+
Sbjct: 72 ISPTFADA-----------------------YSNMGNTLKEMQDVQGALQCYTR---AIQ 105
Query: 611 ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRW 670
I+ A EAI L + + +F + L + W
Sbjct: 106 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-KPDFPDAYCNLAHC---LQIVCDW 161
Query: 671 RLISKSY 677
+
Sbjct: 162 TDYDERM 168
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 3e-06
Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 20/138 (14%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
+ N + N+ EA Y + + P +SN A+ G++
Sbjct: 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEF----------AAAHSNLASVLQQQGKL 59
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL----------NSAAA 558
+EAL A + P F Y + +++ A Y + + ++ A+
Sbjct: 60 QEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLAS 119
Query: 559 VCLDRRITIEAADGLQKA 576
+ D EA + A
Sbjct: 120 IHKDSGNIPEAIASYRTA 137
|
| >2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 2e-11
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 856 MEEDAKKGEPLDFYLILGVK--ASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKA 911
M++ + E L +LG++ A ++KAY K + HPDK + ++ +++
Sbjct: 1 MDKVLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTL 58
|
| >3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 28/90 (31%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPD-------------------------KRSE 901
D+Y ILGV+ +D IK AYR+ A K+HPD +R+E
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 902 YDQEQEIRKATKESPQNSHYGRSSDAYGYA 931
YDQ + + + +Y
Sbjct: 89 YDQ---LWQHRNDPGFGRQRQTHEQSYSQQ 115
|
| >1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 5e-11
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQ---EIRKA 911
D+Y LG+ + +IK+AYR+ AL++HPDK E E+ EI +A
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEA 51
|
| >2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 5e-11
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDK 898
+Y +LGVK + ++KKAYRK ALK HPDK
Sbjct: 9 GYYDVLGVKPDASDNELKKAYRKMALKFHPDK 40
|
| >2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 9e-11
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDK 898
Y +LGV S ++KK YRKAALK+HPDK
Sbjct: 9 KLYDLLGVSPSANEQELKKGYRKAALKYHPDK 40
|
| >2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 1e-10
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDK 898
+Y IL V S +A DIKKAYR+ AL+ HPDK
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDK 34
|
| >1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 2e-10
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 855 SMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKA 911
++E+ KK D+Y ILG S +D+K+ Y+K L +HPDK+S + +
Sbjct: 9 ALEQTLKK----DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEEC 61
|
| >1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 2e-10
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 854 SSMEEDAKKGEPLDFYLILGVK--ASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKA 911
S M E++ +LG++ A ++KAY K + HPDK + ++ +++
Sbjct: 1 SHMREESL-----QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTL 55
|
| >2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 3e-10
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDK 898
D+Y +L V ++ IKKAYRK ALK HPDK
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDK 41
|
| >2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 3e-10
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDK 898
++Y +LGV+AS + DIKKAYRK AL+ HPDK
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDK 41
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 3e-10
Identities = 53/387 (13%), Positives = 119/387 (30%), Gaps = 48/387 (12%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
M L + A + + + I+ LV + N A +GR+
Sbjct: 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVT-WGNYAWVYYHMGRL 110
Query: 509 REALEDCMMAATVDPNFLKVYMRA----------AKCHLVLGEIENAQHYYHKLL----N 554
+ V F Y + + E A+ + K L
Sbjct: 111 SDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK 170
Query: 555 SA--------AAVCLDRRITIEAA-DGLQKAQKVTE-----YINCSGKLLEQ-KTSEAAS 599
+ A+ LD + A D L++A ++ + + KL + + E
Sbjct: 171 NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEG 230
Query: 600 SALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGS 659
+ + EAL + +L A + ++AI+L + L + +N
Sbjct: 231 EGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKAL--------EYIPNNAY 282
Query: 660 VTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVR 719
+ + +R K + + E + +KL ++ + + + E++ +L
Sbjct: 283 LHCQIGCCYRA----KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCS 338
Query: 720 ALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAI 779
L + + +Y EA ++ S + + L + AI
Sbjct: 339 IL------ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI 392
Query: 780 ADCSLAMALDENYTKAVSRRAALHEMI 806
+ +++ + + L ++
Sbjct: 393 HHFIEGVKINQKSREKEKMKDKLQKIA 419
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 9e-09
Identities = 51/381 (13%), Positives = 90/381 (23%), Gaps = 80/381 (20%)
Query: 459 YKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMA 518
N+L + ED T + + A + G+ ALE A
Sbjct: 26 EGENSLDDFEDKV--------FYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKA 77
Query: 519 ---------ATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEA 569
+ L + A + +G + + Q Y K VC
Sbjct: 78 EELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDK----VKHVCEKFSSPYRI 133
Query: 570 ADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYML 629
++ + C G E+ A +AL + + A A Y L
Sbjct: 134 ESPELDCEEGWTRLKCGGNQNER--------AKVCFEKALEKKPKNPEFTSGLAIASYRL 185
Query: 630 ---RKYEEAIQLCEHTL------PVAEKNFASVLADNGSVTYSLARLWR----------- 669
+ AI + + A L +
Sbjct: 186 DNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG 245
Query: 670 ----WRLISKSYFCIGKLEVALDLLQK-----------LEQVGSISDRYGSEILESSMSL 714
R +K Y + + A++LL+K Q+G +++
Sbjct: 246 VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMN----- 300
Query: 715 AGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQ 774
L + AV H A E+ A+ Q
Sbjct: 301 -------LRENGMYGKRKLLELIGHAVAHLKKA----DEANDNLFRVCSILASLHALADQ 349
Query: 775 IADAIADCSLAMALDENYTKA 795
+A + +
Sbjct: 350 YEEAEYYFQKEFSKELTPVAK 370
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 3e-10
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 2/97 (2%)
Query: 733 KSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY 792
+ R E++ ++ AL+ P+ A N+ GQ A A ++A +
Sbjct: 89 RLNRPAESMAYFDKALADPTYPTPYIA--NLNKGICSAKQGQFGLAEAYLKRSLAAQPQF 146
Query: 793 TKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAE 829
A A + A ++ S +E A+
Sbjct: 147 PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD 183
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 28/181 (15%), Positives = 50/181 (27%), Gaps = 27/181 (14%)
Query: 495 YSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL- 553
+ A + R+A A DP ++ A+ + L + AQ + + L
Sbjct: 11 KTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70
Query: 554 ----------NSAAAVCLDRRITIEAADGLQKAQKVTEYI----------NCSGKLLEQK 593
N +C E+ KA Y C +Q
Sbjct: 71 IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC---SAKQG 127
Query: 594 TSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASV 653
A + L+R +L+ + A + + +A + E A
Sbjct: 128 QFGLAEAYLKR---SLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADD 184
Query: 654 L 654
L
Sbjct: 185 L 185
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 5/92 (5%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
E + Y +A AL ++ P + + RA Q L A A++
Sbjct: 15 AMEYMRGQDYRQATASIEDALKSD----PKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70
Query: 788 LDENYTKAVSRR-AALHEMIRDYTQAASDLQR 818
+ + + + L + ++ + +
Sbjct: 71 IKPDSAEINNNYGWFLCGRLNRPAESMAYFDK 102
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 29/229 (12%), Positives = 67/229 (29%), Gaps = 54/229 (23%)
Query: 574 QKAQKVTE-YINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKY 632
+KA +V+ + + + + A++++E AL +E ++A+ L+
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIED---ALKSDPKNELAWLVRAEIYQYLKVN 58
Query: 633 EEAIQLCEHTL------PVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVA 686
++A + L N+ L + + +
Sbjct: 59 DKAQESFRQALSIKPDSAEINNNYGWFLCGR----------------------LNRPAES 96
Query: 687 LDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTV 746
+ K +++D + + + G + K G++ A +
Sbjct: 97 MAYFDK-----ALADPTYPTPYIA-------------NLNKGICSAKQGQFGLAEAYLKR 138
Query: 747 ALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKA 795
+L+ P F A GQ+ DA + E
Sbjct: 139 SLAAQ----PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD 183
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 4e-10
Identities = 61/456 (13%), Positives = 123/456 (26%), Gaps = 104/456 (22%)
Query: 417 NKYEDKVQNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGIN 476
++E + + E+ E + + W +A ++ +E Y
Sbjct: 3 MEFE-RAKAAVESDTEFWDKMQAEWEEMAR--RNWISENQEAQNQVTVSASEKGYYFHTE 59
Query: 477 SVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCH 536
+ R+ G + + A DP A+
Sbjct: 60 NPFKDWPG----------AFEEGLKRLKEGDLPVTILFMEAAILQDPGD-------AEAW 102
Query: 537 LVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSE 596
LG E + +
Sbjct: 103 QFLGIT----------------------------------------------QAENENEQ 116
Query: 597 AASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLAD 656
AA AL+R L + + K L A + ++A + ++ + + ++ +
Sbjct: 117 AAIVALQR---CLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ-NPKYKYLVKN 172
Query: 657 NGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQK-LEQVGSISDRYGSEILESSMSLA 715
R+ SKS LE +L + Q G + D
Sbjct: 173 KKGSPGLTRRM------SKSPVDSSVLEGVKELYLEAAHQNGDMID-------------- 212
Query: 716 GTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQI 775
L G SG + A++ + A + RP + A L +
Sbjct: 213 ----PDLQT-GLGVLFHLSGEFNRAIDAFNAA----LTVRPEDYSLWNRLGATLANGDRS 263
Query: 776 ADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSR 835
+A+ + A+ + + ++ + Y +A S+ +S+ + + +Q
Sbjct: 264 EEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQQVP 321
Query: 836 SPGRTISSRD-LRQACRHLSSMEE-DAKKGEPLDFY 869
P + + LR A + E A LD
Sbjct: 322 HPAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 5e-10
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQ---NSHYGR 923
+FY +LGV + ++ +I++A++K ALK HPDK + + + +
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 924 SSDAYGYACRSSRRQSRQDNWKTYGNSYS 952
D YG + + ++W Y +
Sbjct: 63 KYDKYGEKGLEDNQGGQYESWSYYRYDFG 91
|
| >2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 5e-10
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKAT 912
+Y ILGV S + IKKA+ K A+K+HPDK D E + R+
Sbjct: 8 SYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIA 53
|
| >2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 5e-10
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDK 898
Y +LG+ + T+ DIKK+YRK ALK+HPDK
Sbjct: 18 SLYHVLGLDKNATSDDIKKSYRKLALKYHPDK 49
|
| >2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 7e-10
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQ---EIRKA 911
D+Y ILGV + D+KKAYR+ ALK HPDK + I A
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTA 55
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 7e-10
Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 11/122 (9%)
Query: 712 MSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALST-----------NIESRPFAAI 760
M + K G FK G+Y +AV Y +S + S F
Sbjct: 259 MDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318
Query: 761 CFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLV 820
F N A L + A+ C A+ LD K + RR ++ ++ A D ++++
Sbjct: 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378
Query: 821 SI 822
+
Sbjct: 379 EV 380
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 1e-09
Identities = 36/183 (19%), Positives = 70/183 (38%), Gaps = 11/183 (6%)
Query: 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGIN----SVPLSETAGCCIKPLVL-CYSNR 498
E + + +G +K +A Y + ++ LSE + +L + N
Sbjct: 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 323
Query: 499 AATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL----N 554
A + L +A+E C A +D K R + L++ E E+A+ + K+L
Sbjct: 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383
Query: 555 SAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSC 614
+ AA +A + ++ +++ Y N K EQ E A+ A+ + +
Sbjct: 384 NKAARLQISMCQKKAKEHNERDRRI--YANMFKKFAEQDAKEEANKAMGKKTSEGVTNEK 441
Query: 615 SEK 617
Sbjct: 442 GTD 444
|
| >2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 7e-10
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDK 898
Y +LGV ++ T A IK AY + +HPD+
Sbjct: 18 ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDR 49
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 8e-10
Identities = 25/201 (12%), Positives = 59/201 (29%), Gaps = 38/201 (18%)
Query: 622 KADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIG 681
AD L+ Y EAI++ K + S + + Y+ +
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLE---AKKYNSPYI--------------YNRRAVCYYELA 51
Query: 682 KLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAV 741
K ++A ++ + + ++ + G K G+ + A+
Sbjct: 52 KYDLAQKDIETYFSKVNATKAKSAD-----------------FEYYGKILMKKGQDSLAI 94
Query: 742 EHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAA 801
+ Y A+ + + + G AI + K
Sbjct: 95 QQYQAAVDRD----TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQ 150
Query: 802 LHEMIRDYTQAASDLQRLVSI 822
+ ++Y +A S +++ +
Sbjct: 151 AYYYNKEYVKADSSFVKVLEL 171
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 5e-08
Identities = 29/232 (12%), Positives = 63/232 (27%), Gaps = 41/232 (17%)
Query: 601 ALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSV 660
A+E N+ + S + +A Y L KY+ A + E A
Sbjct: 22 AIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSAD----- 76
Query: 661 TYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRA 720
+ K G+ +A+ Q ++ +++
Sbjct: 77 ---------FEYYGKILMKKGQDSLAIQQYQA-----AVD-------RDTTRLDM----- 110
Query: 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIA 780
+ G+ + G + A+++ + F A + A +
Sbjct: 111 ---YGQIGSYFYNKGNFPLAIQYMEKQIRPT----TTDPKVFYELGQAYYYNKEYVKADS 163
Query: 781 DCSLAMALDENYTKAVSRRAALH---EMIRDYTQAASDLQRLVSILENQSAE 829
+ L N RA + + A ++L+ + A+
Sbjct: 164 SFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 40/305 (13%), Positives = 76/305 (24%), Gaps = 57/305 (18%)
Query: 495 YSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLN 554
A EA+E N +Y R A C+ L + + AQ +
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65
Query: 555 SAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSC 614
+ A + L+++ A +++ A+ +
Sbjct: 66 -----------KVNATKAKSAD-----FEYYGKILMKKGQDSLA---IQQYQAAVDRDTT 106
Query: 615 SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLIS 674
+ Y + AIQ E + V Y L +
Sbjct: 107 RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVF-------YELGQ-------- 150
Query: 675 KSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS 734
+Y+ + A K + L+ ++ + RA + +
Sbjct: 151 -AYYYNKEYVKADSSFVK-----VLE-------LKPNIYIGYLWRARANAAQDPD----- 192
Query: 735 GRYTEAVEHYTVALS----TNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDE 790
+ A +Y + + + A A A +ALD
Sbjct: 193 TKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252
Query: 791 NYTKA 795
KA
Sbjct: 253 TNKKA 257
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 38/334 (11%), Positives = 79/334 (23%), Gaps = 75/334 (22%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
++ + +KNNN EA + + + S Y+ RA L +
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYI----------YNRRAVCYYELAKY 53
Query: 509 REALEDC---MMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL----NSAAAVCL 561
A +D + K + G+ A Y +
Sbjct: 54 DLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDM--- 110
Query: 562 DRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEM 621
Y + A +E+ + ++ K+
Sbjct: 111 --------------------YGQIGSYFYNKGNFPLAIQYMEK---QIRPTTTDPKVFYE 147
Query: 622 KADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIG 681
A Y ++Y +A L + N +
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVL-ELKPNIYIGYLWRARANAAQDPD-------------T 193
Query: 682 KLEVALDLLQK-LEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEA 740
K +A +K +E +Y E++E+ ++ + +A
Sbjct: 194 KQGLAKPYYEKLIEVCAPGGAKYKDELIEA-------------NEYIAYYYTINRDKVKA 240
Query: 741 VEHYTVALSTNIESRPFAAICFCNRAAALQALGQ 774
+ L+ + P L+
Sbjct: 241 DAAWKNILALD----PTNKKAIDGLKMKLEHHHH 270
|
| >1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-09
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDK 898
D+Y ILGV + +I+KAY++ A+K+HPD+
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDR 35
|
| >2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 1e-09
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQ---EIRKA 911
D Y +LGV + + ADIKKAY+K A + HPDK + E +I KA
Sbjct: 18 DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKA 65
|
| >1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-09
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 846 LRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDK 898
+ HL K + ++ ++ KK R+ LK HPDK
Sbjct: 1 MHHHHHHLVPRGS-ILK----EVTSVVEQAWKLPESERKKIIRRLYLKWHPDK 48
|
| >2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-09
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 867 DFYLILGV-KASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKE 914
+ Y +L V + + KAYR A KHHPD+ +++ + +
Sbjct: 16 NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRV 64
|
| >2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-09
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQ---EIRKA 911
D + +LGVK + ++ KAYRK A+ HPDK E + A
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNA 75
|
| >2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 2e-09
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 854 SSMEE--DAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDK 898
S M+ + + + D+Y +LG + I ++ AL+ HPDK
Sbjct: 6 SGMDAILNYRSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDK 52
|
| >2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 2e-09
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDK 898
D+Y ILGV + + +IKKAY + A K+HPD
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDT 39
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 3e-09
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
++SG Y +A + + + + F A QA+GQ AI S
Sbjct: 28 AFNQYQSGXYEDAHXVFQALCVLD----HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83
Query: 788 LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827
+D + A + +A S L ++ N
Sbjct: 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 5e-08
Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 10/137 (7%)
Query: 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRIS 504
+T E Y++ +A + + A R +
Sbjct: 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF----------FLGLGACRQA 67
Query: 505 LGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRR 564
+G+ A+ A +D + AA+C L GE+ A+ A
Sbjct: 68 MGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127
Query: 565 ITIEAADGLQKAQKVTE 581
++ + L+ + E
Sbjct: 128 LSTRVSSMLEAIKLKKE 144
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 6e-09
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 4/89 (4%)
Query: 734 SGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYT 793
+ + A+ P + + A A +G +AL +
Sbjct: 2 TADGPRELLQLRAAVRHR----PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP 57
Query: 794 KAVSRRAALHEMIRDYTQAASDLQRLVSI 822
+AV+R + + + +AA LQ+
Sbjct: 58 EAVARLGRVRWTQQRHAEAAVLLQQASDA 86
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 22/172 (12%), Positives = 37/172 (21%), Gaps = 8/172 (4%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
+ G T L+ + P + A+A A
Sbjct: 30 ADAELGMGDTTAGEMAVQRGLALH----PGHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85
Query: 788 LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLR 847
+ E AA+ R +L + A+ R R L
Sbjct: 86 AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALD 145
Query: 848 QACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKR 899
+ + +L +AA+ R A R
Sbjct: 146 VLSAQVRAAVAQGVGAVEPFAFLSE----DASAAEQLACARTRAQAIAASVR 193
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 23/201 (11%), Positives = 47/201 (23%), Gaps = 41/201 (20%)
Query: 628 MLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVAL 687
M + + ++F + W +++ + +G
Sbjct: 1 MTADGPRELLQLRAAVRHRPQDFVA-----------------WLMLADAELGMGDTTAGE 43
Query: 688 DLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVA 747
+Q+ L V L G + R+ EA A
Sbjct: 44 MAVQRG--------------LALHPGHPEAVARL------GRVRWTQQRHAEAAVLLQQA 83
Query: 748 LSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIR 807
P AL+ GQ A A + A L ++ +
Sbjct: 84 SDAA----PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139
Query: 808 DYTQAASDLQRLVSILENQSA 828
D+ ++ + +
Sbjct: 140 DWRALDVLSAQVRAAVAQGVG 160
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 16/105 (15%), Positives = 28/105 (26%), Gaps = 10/105 (9%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
W + + + T E +G+ P A + R + R
Sbjct: 24 VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA----------VARLGRVRWTQQRH 73
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL 553
EA A+ P + + G+ E A Y +
Sbjct: 74 AEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAH 118
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 10/124 (8%), Positives = 22/124 (17%), Gaps = 20/124 (16%)
Query: 463 NLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522
+ + P + + A + +G +
Sbjct: 4 DGPRELLQLRAAVRHRPQ----------DFVAWLMLADAELGMGDTTAGEMAVQRGLALH 53
Query: 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHK----------LLNSAAAVCLDRRITIEAADG 572
P + R + A + + D AA
Sbjct: 54 PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAA 113
Query: 573 LQKA 576
+A
Sbjct: 114 YTRA 117
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 9e-05
Identities = 15/138 (10%), Positives = 30/138 (21%), Gaps = 22/138 (15%)
Query: 506 GRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRI 565
L A P ++ A L +G+ + + L +
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL----------AL 52
Query: 566 TIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADA 625
+ Q+ A+ L++ A + + A
Sbjct: 53 HPGHPEA---------VARLGRVRWTQQRHAEAAVLLQQ---ASDAAPEHPGIALWLGHA 100
Query: 626 LYMLRKYEEAIQLCEHTL 643
L + E A
Sbjct: 101 LEDAGQAEAAAAAYTRAH 118
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 36/285 (12%), Positives = 76/285 (26%), Gaps = 45/285 (15%)
Query: 539 LGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAA 598
+ + + H + + + D+ E + L+ + + L++ A
Sbjct: 27 MAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHP---QPFEEGLRRLQEGDLPNA 83
Query: 599 SSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTL---PVAEKNFASVLA 655
E A+ + + + AI L P + + L
Sbjct: 84 VLLFEA---AVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP----DNQTAL- 135
Query: 656 DNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQK-LEQVGSISDRYGSEILESSMSL 714
+LA S+ A ++L+ L + Y L +
Sbjct: 136 ------MALAV---------SFTNESLQRQACEILRDWLR----YTPAY--AHLVTPAEE 174
Query: 715 AGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQ 774
L K + E E + A+ + S C G+
Sbjct: 175 GAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS--IDPDVQCGLGVLFNLSGE 232
Query: 775 IADAIADCSLAMALDENYTKAVSRR-AALHEM------IRDYTQA 812
A+ + A+++ N ++ A L + Y +A
Sbjct: 233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 30/242 (12%), Positives = 66/242 (27%), Gaps = 32/242 (13%)
Query: 414 EEENKYEDKVQNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQ 473
E + + DK+Q + E + + + + +G Q + N L + + +
Sbjct: 11 ESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEE 70
Query: 474 GINSVP---LSETAGCC-----IKP-LVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524
G+ + L P + + T+ + A+ + P+
Sbjct: 71 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 130
Query: 525 FLKVYMRAAKCHLVLGEIENAQHYYHK--LLNSAAAVCLDRRITIEAADGLQKAQKVTEY 582
M A A A A + GL ++++
Sbjct: 131 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 190
Query: 583 INCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADA-------LYMLRKYEEA 635
+ LE E A+ + S + D + +Y++A
Sbjct: 191 LLSDSLFLE---------VKELFLAAVRLDPTS-----IDPDVQCGLGVLFNLSGEYDKA 236
Query: 636 IQ 637
+
Sbjct: 237 VD 238
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 15/95 (15%), Positives = 26/95 (27%), Gaps = 4/95 (4%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
G + G AV + A ++ P + Q AI+ +
Sbjct: 71 GLRRLQEGDLPNAVLLFEAA----VQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLE 126
Query: 788 LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
L + A+ A QA L+ +
Sbjct: 127 LKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 161
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 3e-08
Identities = 30/247 (12%), Positives = 69/247 (27%), Gaps = 23/247 (9%)
Query: 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKY 632
L AQ + + GK L + + A +++A+ + + + +
Sbjct: 95 LGSAQVEAQALMLKGKALNVT-PDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDV 153
Query: 633 EEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQK 692
A L N +L+ + R + ++ +
Sbjct: 154 TSAHTCFSGAL---------THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKL 204
Query: 693 LEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI 752
++ ++ + + + N +A+ Y A +
Sbjct: 205 -----AVQ-------MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252
Query: 753 ESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQA 812
++ + NRA + +A+ S A ALD + + R L E + T
Sbjct: 253 KASSNPDL-HLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL 311
Query: 813 ASDLQRL 819
+
Sbjct: 312 LESKGKT 318
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 36/290 (12%), Positives = 83/290 (28%), Gaps = 55/290 (18%)
Query: 414 EEENKYEDKVQNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKN--NNLTEAEDFY 471
E+ + + VQ + E + + + + Q + L+G A + EAE
Sbjct: 71 EDAGRKQQDVQEEMEKTLQQMEEVL---GSAQVEAQALMLKGK-ALNVTPDYSPEAEVLL 126
Query: 472 TQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMR 531
++ + P A ++ G + A A T N + +
Sbjct: 127 SKAVKLEPELVEA----------WNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNL 176
Query: 532 AAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG------------------- 572
+ +VL +++ H + + ++ DG
Sbjct: 177 S----MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ 232
Query: 573 -LQKAQKVTEYINCSGKLLEQKTSEAA---------------SSALERINEALSISSCSE 616
+ +Q+ + K+ + +S ALE ++A ++
Sbjct: 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP 292
Query: 617 KLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLAR 666
+ + + L L + ++ T P ++ L R
Sbjct: 293 EPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGR 342
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 35/229 (15%), Positives = 59/229 (25%), Gaps = 46/229 (20%)
Query: 601 ALERINEALSISSCSEKLLEMKAD----------ALYMLRKYEEAIQLCEHTLPVAEKNF 650
L + EA E + + + K AI H
Sbjct: 33 KLANLAEAAL---AFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR------- 82
Query: 651 ASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILES 710
+ + +V +LA S+ AL L+ + + E L S
Sbjct: 83 -MLDPKDIAVHAALA---------VSHTNEHNANAALASLRA-----WLLSQPQYEQLGS 127
Query: 711 SMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQ 770
A L+ +S Y E A +E P A +
Sbjct: 128 VNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA----LEMNPNDAQLHASLGVLYN 183
Query: 771 ALGQIADAIADCSLAMALDENYTKAVSRR-AALHEM------IRDYTQA 812
A A+ A+ L + + ++ A L + Y +A
Sbjct: 184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRA 232
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 45/357 (12%), Positives = 99/357 (27%), Gaps = 57/357 (15%)
Query: 506 GRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL----NSAAAVCL 561
G M + D A + + M L L + A + + A
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEA--- 57
Query: 562 DRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEM 621
+ + E + A AL A + +
Sbjct: 58 --------------------WRSLGLTQAENEKDGLAIIALNH---ARMLDPKDIAVHAA 94
Query: 622 KADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIG 681
A + A+ L +++ + + + N + L + +
Sbjct: 95 LAVSHTNEHNANAALASLRAWL-LSQPQYEQLGSVNLQADVDIDDL-NVQSEDFFFAAPN 152
Query: 682 KLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAV 741
+ LL ++ + + + +L++ S Y A
Sbjct: 153 EYRECRTLLHA-----ALE-------MNPNDAQLHASLGVLYNLS--------NNYDSAA 192
Query: 742 EHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAA 801
+ A +E RP A + A L + +A+ + A+ ++ Y + + A
Sbjct: 193 ANLRRA----VELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAV 248
Query: 802 LHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEE 858
+ + Y AA L R + + + + SR R++ R ++ +
Sbjct: 249 SYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWD-FFRMLLNVMNRPDL 304
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 25/194 (12%), Positives = 47/194 (24%), Gaps = 27/194 (13%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKP-LVLCYSNRAATRISLGR 507
E G K NL EA + P + + T+ +
Sbjct: 22 ENPMEEGLSMLKLANLAEAALAFEAVCQ-----------AAPEREEAWRSLGLTQAENEK 70
Query: 508 MREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL----NSAAAVCLDR 563
A+ A +DP + V+ A H A L ++
Sbjct: 71 DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNL 130
Query: 564 RITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKA 623
+ ++ D + + L + AL ++ +L
Sbjct: 131 QADVDIDD--------LNVQSEDFFFAAPNEYRECRTLL---HAALEMNPNDAQLHASLG 179
Query: 624 DALYMLRKYEEAIQ 637
+ Y+ A
Sbjct: 180 VLYNLSNNYDSAAA 193
|
| >1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 3e-08
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 856 MEEDAKKGEPLDFYLILGV--KASDTAADIKKAYRKAALKHHPDK 898
M+ + + +L + + +++AY++ +L HPDK
Sbjct: 1 MDRVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDK 45
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 6e-08
Identities = 25/205 (12%), Positives = 53/205 (25%), Gaps = 35/205 (17%)
Query: 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVP------LSETAGCCIKPLVLCYSNRA 499
++ + + + A + +A ++ Q I + + A
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61
Query: 500 ATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL----NS 555
+A PN + A+ + G+ ++A Y K+L ++
Sbjct: 62 LAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121
Query: 556 AAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCS 615
AA I E LE + LS +
Sbjct: 122 LAA-----------------------NIFLGNYYYLTAEQEKK--KLETDYKKLSSPTKM 156
Query: 616 EKLLEMKADALYMLRKYEEAIQLCE 640
+ + +YE+A +
Sbjct: 157 QYARYRDGLSKLFTTRYEKARNSLQ 181
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 6e-07
Identities = 11/107 (10%), Positives = 33/107 (30%), Gaps = 12/107 (11%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTN------------IESRPFAAICFCNRAAALQALGQI 775
+ A ++G+ +AV ++ ++ N ++ ++ A A +
Sbjct: 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNY 70
Query: 776 ADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
A + N + A + A ++++ +
Sbjct: 71 DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 8e-05
Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 5/96 (5%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
K+ Y +A Y L P C A GQ DA+ +
Sbjct: 61 ALAYKKNRNYDKAYLFYKELLQKA----PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116
Query: 788 LDENYTKAVSRRA-ALHEMIRDYTQAASDLQRLVSI 822
L+ + A + + + +S
Sbjct: 117 LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS 152
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 3/95 (3%)
Query: 735 GRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTK 794
RY EA + A + F N + + A A ++ L+ N
Sbjct: 119 KRYEEAYQRLLEASQDTLYPERSRV--FENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS 176
Query: 795 AVSRRAALHEMIRDYTQAASDLQRLVSILENQSAE 829
A L R+Y A Q+A
Sbjct: 177 VALEMADLLYKEREYVPARQYYDLFAQG-GGQNAR 210
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 4e-06
Identities = 41/283 (14%), Positives = 77/283 (27%), Gaps = 51/283 (18%)
Query: 545 AQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTE-----YINCSGKLLEQKTSEAAS 599
++H +S L R + K K + YI L++ +E A
Sbjct: 2 GSSHHHHHHSSG----LVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAK 57
Query: 600 SALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGS 659
L + AL I S A + + A + L + + N
Sbjct: 58 VPLRK---ALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKAL--------ASDSRNAR 106
Query: 660 VTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVR 719
V + + + E A L + + D E
Sbjct: 107 VLNNYGGF---------LYEQKRYEEAYQRLLE-----ASQDTLYPERSRV--------- 143
Query: 720 ALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAI 779
++ G + + + +A E++ +L N A L + A
Sbjct: 144 ----FENLGLVSLQMKKPAQAKEYFEKSLRLN----RNQPSVALEMADLLYKEREYVPAR 195
Query: 780 ADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
L +++ L ++ D AAS +L +
Sbjct: 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 35/164 (21%), Positives = 53/164 (32%), Gaps = 22/164 (13%)
Query: 495 YSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL- 553
Y + G +A A +DP+ + A E + A Y K L
Sbjct: 40 YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA 99
Query: 554 ----------NSAAAVCLDRRITIEAADGLQKAQKVTEYINCS------GK-LLEQKTSE 596
N + +R EA L +A + T Y S G L+ K
Sbjct: 100 SDSRNARVLNNYGGFLYEQKRYE-EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPA 158
Query: 597 AASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCE 640
A E+ +L ++ + AD LY R+Y A Q +
Sbjct: 159 QAKEYFEK---SLRLNRNQPSVALEMADLLYKEREYVPARQYYD 199
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 9/101 (8%), Positives = 27/101 (26%), Gaps = 12/101 (11%)
Query: 455 GNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKP-LVLCYSNRAATRISLGRMREALE 513
G + + +A++++ + + + A A +
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLR-----------LNRNQPSVALEMADLLYKEREYVPARQ 196
Query: 514 DCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLN 554
+ A + + + V + + A Y +L
Sbjct: 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 | Back alignment and structure |
|---|
Score = 54.8 bits (131), Expect = 1e-07
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 12/117 (10%)
Query: 842 SSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE 901
S + H+ + +FY +LGV + ++ +I++A++K ALK HPDK
Sbjct: 4 SHHHHHHSSGHIEGRHDQ-------NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPN 56
Query: 902 ----YDQEQEIRKATKESPQNSHYGRSSDAYGYACRSSRRQSRQDNWKTYGNSYSRW 954
+ +I +A E ++ + D YG + + ++W Y + +
Sbjct: 57 NPNAHGDFLKINRA-YEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIY 112
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 7/102 (6%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
G A + A++ ++ + + ICF N L + +A + ++
Sbjct: 13 GVLAADKKDWKGALDAFSAVQDPH------SRICF-NIGCMYTILKNMTEAEKAFTRSIN 65
Query: 788 LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAE 829
D++ A +R L+ Y A DL+ + L
Sbjct: 66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI 107
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 13/99 (13%), Positives = 31/99 (31%), Gaps = 17/99 (17%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTN------------IESRPFAAICFCNRAAALQALGQI 775
G +++ +Y A++ AL ++ + FA N A +
Sbjct: 78 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137
Query: 776 ADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAAS 814
A +LA ++ R + + + + +
Sbjct: 138 KKAEEQLALATSMKSEP-----RHSKIDKAMECVWKQKL 171
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 34/238 (14%), Positives = 72/238 (30%), Gaps = 33/238 (13%)
Query: 601 ALERINEALSISSCSEK----LLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLAD 656
+ A+ + + K + +A + L Y +A++ H L +A + D
Sbjct: 28 GVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART-----IGD 82
Query: 657 NGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQK-LEQVGSISDRYGSEILESSMSLA 715
+ L + +G + A+ Q+ L+ ++D+ G + +L
Sbjct: 83 QLGEAKASGNL------GNTLKVLGNFDEAIVCCQRHLDISRELNDKVG--EARALYNLG 134
Query: 716 GT-------VRALLHHKSAGNEAFKSGRYTEAVEHYTVALS--TNIESRPFAAICFCNRA 766
AV+ Y LS T + R F N
Sbjct: 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLG 194
Query: 767 AALQALGQIADAIADC--SLAMA--LDENYTKAVSRR--AALHEMIRDYTQAASDLQR 818
LG DA+ L +A + + + + + ++ A+ ++
Sbjct: 195 NTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 59/420 (14%), Positives = 119/420 (28%), Gaps = 90/420 (21%)
Query: 455 GNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALED 514
G + K+ + F+ +V + +K L YS L +ALE
Sbjct: 16 GERLCKSGDCRAGVSFFEA---AVQVGTED---LKTLSAIYSQLGNAYFYLHDYAKALEY 69
Query: 515 C-----MMAATVD-PNFLKVYMRAAKCHLVLGEIENAQHYYHK----------------L 552
+ D K VLG + A +
Sbjct: 70 HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129
Query: 553 LNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSIS 612
L + V + + + E + A++ E LS+
Sbjct: 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA------------AVDFYEENLSLV 177
Query: 613 SCSEKLLEMKADAL-------YMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLA 665
+ A Y+L + +A+ E L +A++ D + + +
Sbjct: 178 TALGDRAAQ-GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-----FGDKAAERRAYS 231
Query: 666 RLWRWRLISKSYFCIGKLEVALDLLQK-LEQVGSISDRYGSEILESSMSLAGTVRALLHH 724
L +Y +G+ E A + +K L + DR +S SL T L
Sbjct: 232 NL------GNAYIFLGEFETASEYYKKTLLLARQLKDRAV--EAQSCYSLGNTYTLL--- 280
Query: 725 KSAGNEAFKSGRYTEAVEHYTVALS--TNIESRPFAAICFCNRAAALQALGQIADAIADC 782
Y +A++++ L+ + R + A ALG A+
Sbjct: 281 ----------QDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330
Query: 783 --SLAMA--LDENYTKAVSRR--AALH-------EMIRDYTQAASDLQRLVSILENQSAE 829
L ++ + + + +R + L +++ ++ + +
Sbjct: 331 EKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGR 390
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 29/188 (15%), Positives = 57/188 (30%), Gaps = 40/188 (21%)
Query: 619 LEMKADALYMLRKYEEAIQLCEHTLPVAEKN---FASVLADNGSVTYSLARLWRWRLISK 675
L ++ + L + E + V ++ +++ + G+
Sbjct: 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNA--------------- 56
Query: 676 SYFCIGKLEVALDLLQK-LEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS 734
YF + AL+ L +I D+ G ++S +L T++ L
Sbjct: 57 -YFYLHDYAKALEYHHHDLTLARTIGDQLG--EAKASGNLGNTLKVL------------- 100
Query: 735 GRYTEAVEHYTVAL--STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDE-- 790
G + EA+ L S + + A N A G+ + +E
Sbjct: 101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160
Query: 791 -NYTKAVS 797
AV
Sbjct: 161 DALQAAVD 168
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 18/93 (19%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
G + + GRY A+ + AL N P A LG + A+ + +A
Sbjct: 12 GVQLYALGRYDAALTLFERALKEN----PQDPEALYWLARTQLKLGLVNPALENGKTLVA 67
Query: 788 LDENYTKAVSRRA-ALHEMIRDYTQAASDLQRL 819
Y + A + R L
Sbjct: 68 RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYL 100
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 3e-06
Identities = 32/215 (14%), Positives = 59/215 (27%), Gaps = 37/215 (17%)
Query: 601 ALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTL---PVAEKNFASVLADN 657
AL AL + + L A L A++ + + P +
Sbjct: 24 ALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP----RYLGGYMVL 79
Query: 658 GSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGT 717
L+R + G LE AL +L+ + + +
Sbjct: 80 SEA---YVALYRQAEDRERG--KGYLEQALSVLKD-----AER-------VNPRYAPL-- 120
Query: 718 VRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIAD 777
H G G +A AL+ I A ++G++ +
Sbjct: 121 ------HLQRGLVYALLGERDKAEASLKQALALE----DTPEIRS-ALAELYLSMGRLDE 169
Query: 778 AIADCSLAMALDENYTKAVSRRAALHEMIRDYTQA 812
A+A + A+ R A+ + +A
Sbjct: 170 ALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEA 204
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 6e-06
Identities = 37/220 (16%), Positives = 64/220 (29%), Gaps = 42/220 (19%)
Query: 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKP-LVLCYSNRAATRI 503
Q + G Q Y A + + + P A T++
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALK-----------ENPQDPEALYWLARTQL 50
Query: 504 SLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDR 563
LG + ALE+ P +L YM ++ ++ L + L A + L
Sbjct: 51 KLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALS-VLKD 109
Query: 564 RITI-----EA----ADGLQKAQKVTEYINCSGKLLEQK-TSEA------ASSALERINE 607
+ + + + L + T E ++ R++E
Sbjct: 110 AERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDE 169
Query: 608 ALSISSCSEKLLEMKAD----------ALYMLRKYEEAIQ 637
AL + K LE AL + K EEA +
Sbjct: 170 AL---AQYAKALEQAPKDLDLRVRYASALLLKGKAEEAAR 206
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 38/201 (18%), Positives = 60/201 (29%), Gaps = 50/201 (24%)
Query: 625 ALYMLRKYEEAIQLCEHTL------PVAEKNFASVLADNGSVTYSLARLWRWRLISKSYF 678
LY L +Y+ A+ L E L P A A
Sbjct: 14 QLYALGRYDAALTLFERALKENPQDPEALYWLARTQLK---------------------- 51
Query: 679 CIGKLEVALDLLQK-LEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRY 737
+G + AL+ + + + RY L M L+ AL ++ A + G
Sbjct: 52 -LGLVNPALENGKTLVA----RTPRY----LGGYMVLSEAYVAL--YRQAEDRERGKGYL 100
Query: 738 TEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVS 797
+A+ A P A R LG+ A A A+AL++ +
Sbjct: 101 EQALSVLKDA----ERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156
Query: 798 RRAALHEM------IRDYTQA 812
M + Y +A
Sbjct: 157 LAELYLSMGRLDEALAQYAKA 177
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-07
Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
E G A++ L T + A + LG A+ + A+
Sbjct: 7 IKELINQGDIENALQALEEFLQTEPVG---KDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63
Query: 788 LDENYTKAVSRRAALHEMIRDYTQAA 813
L+ + +R+ + +++ Y +
Sbjct: 64 LNPDSPALQARK-MVMDILNFYNKDM 88
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 27/239 (11%), Positives = 64/239 (26%), Gaps = 48/239 (20%)
Query: 597 AASSALERINEALSIS-SCSEKLLEMKA-----DALYMLRKYEEAIQLCEHTLPVAEKNF 650
AA A + + A + +++EA + A+K
Sbjct: 1 AAFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQK-- 58
Query: 651 ASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQK-LEQVGSISDRYGSEILE 709
D+ + +L ++ G + A + E + S+ + +
Sbjct: 59 ---SGDHTAEHRALHQV------GMVERMAGNWDAARRCFLEERELLASLPEDPLAA--- 106
Query: 710 SSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL--STNIESRPFAAICFCNRAA 767
+ + A G A + Y +L + + + A F
Sbjct: 107 -----SANAYEV------ATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGD 155
Query: 768 ALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826
Q + +A +++ +A + + D + RL + +
Sbjct: 156 LAQQEKNLLEAQ----------QHWLRAR----DIFAELEDSEAVNELMTRLNGLEHHH 200
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 22/183 (12%), Positives = 43/183 (23%), Gaps = 34/183 (18%)
Query: 601 ALERINEALSIS-SCSEKLLEMKA-----DALYMLRKYEEAIQLCEHTLPVAEKNFASVL 654
A + + E +A M ++ A + + +
Sbjct: 45 ARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS----LP 100
Query: 655 ADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQK-LEQVGSISDRYGSEILESSMS 713
D + + + + + G L A +K L D+
Sbjct: 101 EDPLAASANAYEV------ATVALHFGDLAGARQEYEKSLVYAQQADDQVA--------- 145
Query: 714 LAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL--STNIESRPFAAICFCNRAAALQA 771
+A R L G+ A + EA +H+ A +E
Sbjct: 146 IACAFRGL------GDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHH 199
Query: 772 LGQ 774
Sbjct: 200 HHH 202
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 4e-07
Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Query: 735 GRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTK 794
G +AV +Y A+++ ++ A C+ + + LG+ A A + + N+
Sbjct: 4 GLEAQAVPYYEKAIASGLQ-GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 795 AVSRRAALHEMIRDYTQAASDLQRLVSILENQSA 828
A + + Y Q L ++++ +
Sbjct: 63 LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 6e-04
Identities = 14/78 (17%), Positives = 21/78 (26%), Gaps = 15/78 (19%)
Query: 735 GRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTK 794
G Y +A + P A L LG+ + +A +
Sbjct: 41 GEYRKAEAVLANGVKQF----PNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD--- 93
Query: 795 AVSRRAALHEMIRDYTQA 812
E I+ Y QA
Sbjct: 94 --------DETIQSYKQA 103
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 4e-07
Identities = 14/95 (14%), Positives = 24/95 (25%), Gaps = 4/95 (4%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
G K EA + P + + + AI + A
Sbjct: 24 GLSMLKLANLAEAALAFEAVCQKE----PEREEAWRSLGLTQAENEKDGLAIIALNHARM 79
Query: 788 LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
LD + A H + A + L+ +
Sbjct: 80 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 114
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 20/105 (19%), Positives = 29/105 (27%), Gaps = 10/105 (9%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
E G K NL EA + P E A + + T+ +
Sbjct: 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEA----------WRSLGLTQAENEKD 67
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL 553
A+ A +DP + V+ A H A L
Sbjct: 68 GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL 112
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 53/364 (14%), Positives = 112/364 (30%), Gaps = 76/364 (20%)
Query: 455 GNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALE- 513
G + + F+ ++ ++ L YS LG +A++
Sbjct: 55 GERLCNAGDCRAGVAFFQA---AIQAGTED---LRTLSAIYSQLGNAYFYLGDYNKAMQY 108
Query: 514 ---DCMMAATVD--PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE 568
D +A +++ K V+G + A + L + +
Sbjct: 109 HKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL----------TLARQ 158
Query: 569 AADGLQKA----------QKVTEYINCSGKLLEQKTSEAASS-ALERINEALSISSCSEK 617
D L + +++ + A + A+E E L +
Sbjct: 159 LGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM---RD 215
Query: 618 LLEMK---------ADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLW 668
L + + Y+L ++ AI+ + L +A + D + + + L
Sbjct: 216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE-----FGDRAAERRANSNL- 269
Query: 669 RWRLISKSYFCIGKLEVALDLLQK-LEQVGSISDRYGSEILESSMSLAGTVRALLHHKSA 727
S+ +G+ E A + ++ L + +R +S SL T L
Sbjct: 270 -----GNSHIFLGQFEDAAEHYKRTLALAVELGEREV--EAQSCYSLGNTYTLL------ 316
Query: 728 GNEAFKSGRYTEAVEHYTVALS--TNIESRPFAAICFCNRAAALQALGQIADAIA--DCS 783
+ A+E++ L+ + R A + A A+G A+ +
Sbjct: 317 -------HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369
Query: 784 LAMA 787
L +A
Sbjct: 370 LQLA 373
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 9e-07
Identities = 41/211 (19%), Positives = 76/211 (36%), Gaps = 30/211 (14%)
Query: 623 ADALYMLRKYEEAIQLCEHTLPVAEK-----NFASVLADNGSVTYSLAR-LWRWRLISKS 676
+ L ++ +++EA CE L +A + + L + G+V ++ + L +
Sbjct: 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFG 192
Query: 677 YFCIGKLEVALDLLQK-LEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSG 735
L A++ Q+ L+ + + DR L GN + G
Sbjct: 193 DDVKEALTRAVEFYQENLKLMRDLGDRGA---------QGRACGNL------GNTYYLLG 237
Query: 736 RYTEAVEHYTVAL--STNIESRPFAAICFCNRAAALQALGQIADAIADC--SLAMA--LD 789
+ A+EH+ L + R N + LGQ DA +LA+A L
Sbjct: 238 DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297
Query: 790 ENYTKAVSRR--AALHEMIRDYTQAASDLQR 818
E +A S + ++ ++ A R
Sbjct: 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 6e-07
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 11/97 (11%)
Query: 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADC 782
+ G Y +A E +T A+ N AI + N A L ++ ++ A+A
Sbjct: 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN----KEDAIPYINFANLLSSVNELERALAFY 80
Query: 783 SLAMALDENYTKAVSRRA-ALHEM------IRDYTQA 812
A+ LD + A + +A
Sbjct: 81 DKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKA 117
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 7e-07
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 11/92 (11%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
GN Y EA + + A + + F L L Q A+ A+
Sbjct: 98 GNVYVVKEMYKEAKDMFEKA----LRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE 153
Query: 788 LDENYTKAVSRRA-ALHEM------IRDYTQA 812
L+EN T+A + L + +
Sbjct: 154 LNENDTEARFQFGMCLANEGMLDEALSQFAAV 185
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 11/92 (11%), Positives = 20/92 (21%), Gaps = 11/92 (11%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
N A+ Y A +E AA + +A A+
Sbjct: 64 ANLLSSVNELERALAFYDKA----LELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR 119
Query: 788 LDENYTKAVSRRA-ALHEM------IRDYTQA 812
L ++ + +A
Sbjct: 120 AGMENGDLFYMLGTVLVKLEQPKLALPYLQRA 151
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 4e-06
Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 4/82 (4%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
G G EA+ + E P A F N A+ A+
Sbjct: 166 GMCLANEGMLDEALSQFAAV----TEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221
Query: 788 LDENYTKAVSRRAALHEMIRDY 809
+ ++ A+ + L +
Sbjct: 222 IQPDHMLALHAKKLLGHHHHHH 243
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 8e-06
Identities = 11/92 (11%), Positives = 23/92 (25%), Gaps = 11/92 (11%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
G K + A+ + A+ N L G + +A++ +
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVELN----ENDTEARFQFGMCLANEGMLDEALSQFAAVTE 187
Query: 788 LDENYTKAVSRRA-ALHEM------IRDYTQA 812
D + A + +A
Sbjct: 188 QDPGHADAFYNAGVTYAYKENREKALEMLDKA 219
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 1e-04
Identities = 23/204 (11%), Positives = 44/204 (21%), Gaps = 62/204 (30%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKP-LVLCYSNRAATRISLGR 507
+ N N L A FY + + + Y +
Sbjct: 58 IPYINFANLLSSVNELERALAFYDKALE-----------LDSSAATAYYGAGNVYVVKEM 106
Query: 508 MREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL----NSAAAVCLDR 563
+EA + A ++ + L + + A Y + + N A
Sbjct: 107 YKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA----- 161
Query: 564 RITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKA 623
G L ++EA +S + E
Sbjct: 162 ------------------RFQF-GMCLAN---------EGMLDEA--LSQF-AAVTEQDP 190
Query: 624 D----------ALYMLRKYEEAIQ 637
E+A++
Sbjct: 191 GHADAFYNAGVTYAYKENREKALE 214
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 47.8 bits (115), Expect = 7e-07
Identities = 15/96 (15%), Positives = 36/96 (37%), Gaps = 13/96 (13%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
G + +G YTE+++ + A+ + P + + + AL L + +A+ + +
Sbjct: 13 GVLQYDAGNYTESIDLFEKAIQLD----PEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68
Query: 788 LDENYTKAV---SRRAALHEM------IRDYTQAAS 814
+ E+ ++ AL + A
Sbjct: 69 VIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAK 104
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 2e-06
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 735 GRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY 792
RY EAV+ Y ++ + + + +A AL+ + L+ ++
Sbjct: 54 ERYEEAVDCYNYVIN--VIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 8e-07
Identities = 21/91 (23%), Positives = 29/91 (31%), Gaps = 5/91 (5%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
G ++G + A E + +E P NR AL G+ A D
Sbjct: 84 GIYLTQAGNFDAAYEAFDSV----LELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139
Query: 788 LDENYTKAVSRRAALHEMIRDYTQAASDLQR 818
D N L E D QA L++
Sbjct: 140 DDPNDPFRSLWL-YLAEQKLDEKQAKEVLKQ 169
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 8e-07
Identities = 25/213 (11%), Positives = 57/213 (26%), Gaps = 32/213 (15%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKP-LVLCYSNRAATRISLGR 507
++ RG A + ++Q + I+P + ++ G
Sbjct: 44 QLLYERGVLYDSLGLRALARNDFSQALA-----------IRPDMPEVFNYLGIYLTQAGN 92
Query: 508 MREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL----NSAAA----- 558
A E +DP + ++ G + AQ N
Sbjct: 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 152
Query: 559 VCLDRRITIEAADGLQKAQKVTEYINCS--------GKLLEQKTSEAASSALERINEALS 610
+ + +A + L++ + ++ G + EQ E + S
Sbjct: 153 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER---LKADATDNTS 209
Query: 611 ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTL 643
++ + L + A L + +
Sbjct: 210 LAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 242
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 8e-07
Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 7/96 (7%)
Query: 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCS 783
+ + + + L++ + A R +LG A A D S
Sbjct: 8 SEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFS 67
Query: 784 LAMALDENYTKAVSRRA-ALHEM------IRDYTQA 812
A+A+ + + + L + +
Sbjct: 68 QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV 103
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 18/92 (19%), Positives = 23/92 (25%), Gaps = 11/92 (11%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
G G A ++ AL+ P F L G A +
Sbjct: 50 GVLYDSLGLRALARNDFSQALAIR----PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE 105
Query: 788 LDENYTKAVSRRA-ALHEM------IRDYTQA 812
LD Y A R AL+ D
Sbjct: 106 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF 137
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 8e-06
Identities = 35/318 (11%), Positives = 76/318 (23%), Gaps = 79/318 (24%)
Query: 505 LGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL----NSAAAVC 560
L RM + L A D ++ + LG A++ + + L +
Sbjct: 25 LARMEQILAS---RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV-- 79
Query: 561 LDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLE 620
+ L + +AA A + L +
Sbjct: 80 ---------------------FNYLGIYLTQAGNFDAAYEAF---DSVLELDPTYNYAHL 115
Query: 621 MKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI 680
+ ALY + + A + + D+ + W ++ +
Sbjct: 116 NRGIALYYGGRDKLAQ-----------DDLLAFYQDD----PNDPFRSLWLYLA--EQKL 158
Query: 681 GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEA 740
+ + L Q E+ + ++ + +
Sbjct: 159 DEKQAKEVLKQHFEKSDKEQWGW---------NIVEFYLGNISEQ---------TLMERL 200
Query: 741 VEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKA-VSRR 799
T S + +LG + A A LA+A + +
Sbjct: 201 KADATDNTSLA----EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYAL 256
Query: 800 AALHEM------IRDYTQ 811
L + + + Q
Sbjct: 257 LELSLLGQDQDDLAESDQ 274
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 11/92 (11%), Positives = 28/92 (30%), Gaps = 1/92 (1%)
Query: 731 AFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDE 790
A + +A E + + + I + + AD + +L E
Sbjct: 154 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSLAE 212
Query: 791 NYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
+ ++ + + D A + + V+
Sbjct: 213 HLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 9e-07
Identities = 33/241 (13%), Positives = 72/241 (29%), Gaps = 39/241 (16%)
Query: 601 ALERINEALSISSCSEKLLEMKADAL-------YMLRKYEEAIQLCEHTLPVAEKNFASV 653
+ A+ + + L+ + + L Y +A++ H L +A
Sbjct: 24 GVSFFEAAVQVG---TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART----- 75
Query: 654 LADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQK-LEQVGSISDRYGSEILESSM 712
+ D + L + +G + A+ Q+ L+ ++D+ G +
Sbjct: 76 IGDQLGEAKASGNL------GNTLKVLGNFDEAIVCCQRHLDISRELNDKVG--EARALY 127
Query: 713 SLAGT-------VRALLHHKSAGNEAFKSGRYTEAVEHYTVALS--TNIESRPFAAICFC 763
+L + AV+ Y LS T + R F
Sbjct: 128 NLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFG 187
Query: 764 NRAAALQALGQIADAIADC--SLAMA--LDENYTKAVSRR--AALHEMIRDYTQAASDLQ 817
N LG DA+ L +A + + + + + ++ A+ +
Sbjct: 188 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247
Query: 818 R 818
+
Sbjct: 248 K 248
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 60/363 (16%), Positives = 113/363 (31%), Gaps = 71/363 (19%)
Query: 455 GNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALED 514
G + K+ + F+ +V + +K L YS L +ALE
Sbjct: 12 GERLCKSGDCRAGVSFFEA---AVQVGTED---LKTLSAIYSQLGNAYFYLHDYAKALEY 65
Query: 515 C----MMAATVD--PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRIT-- 566
+A T+ K VLG + A + + + R +
Sbjct: 66 HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR------HLDISRELNDK 119
Query: 567 IEAADGL--------QKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKL 618
+ A L K + + A +A++ E LS+ L
Sbjct: 120 VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV---TAL 176
Query: 619 LEMK---------ADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWR 669
+ + Y+L + +A+ E L +A++ D + + + L
Sbjct: 177 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-----FGDKAAERRAYSNL-- 229
Query: 670 WRLISKSYFCIGKLEVALDLLQK-LEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAG 728
+Y +G+ E A + +K L + DR +S SL T L
Sbjct: 230 ----GNAYIFLGEFETASEYYKKTLLLARQLKDRAV--EAQSCYSLGNTYTLL------- 276
Query: 729 NEAFKSGRYTEAVEHYTVAL--STNIESRPFAAICFCNRAAALQALGQIADAIADC--SL 784
Y +A++++ L + ++ R + A ALG A+ L
Sbjct: 277 ------QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330
Query: 785 AMA 787
++
Sbjct: 331 EIS 333
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 6e-06
Identities = 47/242 (19%), Positives = 93/242 (38%), Gaps = 39/242 (16%)
Query: 601 ALERINEALSIS-SCSEKLLEMKA-----DALYMLRKYEEAIQLCEHTLPVAEK-----N 649
ALE + L+++ + ++L E KA + L +L ++EAI C+ L ++ +
Sbjct: 62 ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG 121
Query: 650 FASVLADNGSVTYSLARLWRWRLISKSYFCI----GKLEVALDLLQK-LEQVGSISDRYG 704
A L + G+V ++ + + + L+ A+DL ++ L V ++ DR
Sbjct: 122 EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAA 181
Query: 705 SEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL--STNIESRPFAAICF 762
L GN + G + +AV + L + + +
Sbjct: 182 ---------QGRAFGNL------GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY 226
Query: 763 CNRAAALQALGQIADAIADC--SLAMA--LDENYTKAVSRR--AALHEMIRDYTQAASDL 816
N A LG+ A +L +A L + +A S + +++DY +A
Sbjct: 227 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 286
Query: 817 QR 818
+
Sbjct: 287 LK 288
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 28/188 (14%), Positives = 56/188 (29%), Gaps = 40/188 (21%)
Query: 619 LEMKADALYMLRKYEEAIQLCEHTLPVAEKN---FASVLADNGSVTYSLARLWRWRLISK 675
L ++ + L + E + V ++ +++ + G+
Sbjct: 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNA--------------- 52
Query: 676 SYFCIGKLEVALDLLQK-LEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS 734
YF + AL+ L +I D+ G ++S +L T++ L
Sbjct: 53 -YFYLHDYAKALEYHHHDLTLARTIGDQLG--EAKASGNLGNTLKVL------------- 96
Query: 735 GRYTEAVEHYTVAL--STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDE-- 790
G + EA+ L S + + A N A G+ ++
Sbjct: 97 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVR 156
Query: 791 -NYTKAVS 797
AV
Sbjct: 157 NALQAAVD 164
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADC--SLA 785
G KSG V + A+ E + + A L A A+ L
Sbjct: 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71
Query: 786 MA--LDENYTKAVS--RRAALHEMIRDYTQAASDLQR 818
+A + + +A + +++ ++ +A QR
Sbjct: 72 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 108
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 35/296 (11%), Positives = 96/296 (32%), Gaps = 32/296 (10%)
Query: 536 HLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTS 595
+ + +A+ ++ + D+ + I + + Q + +Y+ + T
Sbjct: 22 MIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTV 81
Query: 596 EAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLA 655
+E + L+ L + + ++Y EAI ++
Sbjct: 82 TELLETIETPQKKLTGLLKYYSLF-FRGMYEFDQKEYVEAIGYYREAEKELPF-----VS 135
Query: 656 DNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLA 715
D+ ++ +++Y+ + + V++ + + + Y ++S +A
Sbjct: 136 DDIEKAEFHFKV------AEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189
Query: 716 GTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL--STNIESRPFAAICFCNRAAALQALG 773
G Y +A+ H AL + +I++ F AI N A + G
Sbjct: 190 GNYDDF-------------KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG 236
Query: 774 QIADAIADC--SLAMA---LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILE 824
A+ + ++ + + K + + +A ++ + +
Sbjct: 237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 2e-06
Identities = 41/272 (15%), Positives = 72/272 (26%), Gaps = 59/272 (21%)
Query: 605 INEALSISSCSE----KLLEMKADALYMLRKYEEAIQL---CEHTLPVAEKNFASVLADN 657
INEA + S + A RKY + A + FA LA +
Sbjct: 19 INEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASH 78
Query: 658 GSVTYSLARL-------------WRWRLISKSYFCIGKLEVALDLLQKLEQVGSIS---- 700
+A L + + YF + AL L + + + ++
Sbjct: 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQ 138
Query: 701 -----DRY--GSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIE 753
DR + L+ + + A + +A +
Sbjct: 139 ILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-- 196
Query: 754 SRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAAL----------- 802
+ +AA A G+ A A+ D + + + L
Sbjct: 197 --SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT 254
Query: 803 -------------HEMIRDYTQAASDLQRLVS 821
H I++Y +D RLV
Sbjct: 255 NRYLSQLKDAHRSHPFIKEYRAKENDFDRLVL 286
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 4e-06
Identities = 33/209 (15%), Positives = 58/209 (27%), Gaps = 27/209 (12%)
Query: 499 AATRISLGRMREALE--DCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLN-- 554
A S R + D M+ +VD + AA + + A H+ +
Sbjct: 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLE 131
Query: 555 ---SAAAVCLDRRITIEAADGLQKAQKV----TEYINCSGKLLEQKTSEAASSALERINE 607
+ L A L+K Q T + + E A E
Sbjct: 132 CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191
Query: 608 ALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARL 667
S + LL +A ++E A + + L + L + ++ L +
Sbjct: 192 MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH-PETLINLVVLSQHLGK- 249
Query: 668 WRWRLISKSYFCIGKLEVALDLLQKLEQV 696
EV L +L+
Sbjct: 250 --------------PPEVTNRYLSQLKDA 264
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-06
Identities = 10/95 (10%), Positives = 25/95 (26%), Gaps = 4/95 (4%)
Query: 739 EAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSR 798
E L+ + Q A+ A+ D Y+ A
Sbjct: 3 AITERLEAMLAQG----TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKW 58
Query: 799 RAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQ 833
+ D A + ++ +++ ++ +
Sbjct: 59 LGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVK 93
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 9e-06
Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 20/112 (17%)
Query: 720 ALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAI 779
LL + G + ++ A+ H AL + P ++ + LQ G A A
Sbjct: 19 MLLRF-TLGKTYAEHEQFDAALPHLRAALDFD----PTYSVAWKWLGKTLQGQGDRAGAR 73
Query: 780 ADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKA 831
+A ++ Q +LQ + L + A +
Sbjct: 74 QAWESGLAAAQSRGDQ---------------QVVKELQVFLRRLAREDALEH 110
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 2e-06
Identities = 12/97 (12%), Positives = 29/97 (29%), Gaps = 11/97 (11%)
Query: 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADC 782
+++ G K+GRY++AV + F + A G +
Sbjct: 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD----AFDVDVALHLGIAYVKTGAVDRGTELL 65
Query: 783 SLAMALDENYTKAVSRRA-ALHEM------IRDYTQA 812
++A + K + ++ + +
Sbjct: 66 ERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKV 102
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 3e-05
Identities = 11/92 (11%), Positives = 20/92 (21%), Gaps = 11/92 (11%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
G K+G E + + P + + A+
Sbjct: 49 GIAYVKTGAVDRGTELLERS----LADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE 104
Query: 788 LDENYTKAVSRRA-ALHEM------IRDYTQA 812
+ R AL + I + A
Sbjct: 105 ANPINFNVRFRLGVALDNLGRFDEAIDSFKIA 136
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 4e-05
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
G GR+ EA++ + +AL P A + + +G+ +A+ A
Sbjct: 117 GVALDNLGRFDEAIDSFKIALGLR----PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172
Query: 788 LDENYTKA 795
LDE +
Sbjct: 173 LDEGASVE 180
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 7e-05
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 11/92 (11%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
G + +Y AV N P AL LG+ +AI +A+
Sbjct: 83 GLTYVQVQKYDLAVPLLIKVAEAN----PINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138
Query: 788 LDENYTKAVSRRA-ALHEM------IRDYTQA 812
L N K A + +M + + +A
Sbjct: 139 LRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
|
| >2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 3e-06
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 869 YLILGVKAS-DTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKA 911
IL + + T +K+ +RK L +HPDK +I +A
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEA 60
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 46.2 bits (111), Expect = 4e-06
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
GN +K G Y EA+E+Y AL + P +A + N A G +AI A+
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELD----PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 788 LDENYTKAVSRRA-ALHEM------IRDYTQA 812
LD +A A ++ I Y +A
Sbjct: 64 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 95
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 43.9 bits (105), Expect = 3e-05
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
GN +K G Y EA+E+Y AL + P +A + N A G +AI A+
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALELD----PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 97
Query: 788 LDENYTKAVSRRA-ALHEM------IRDYTQA 812
LD +A A ++ I Y +A
Sbjct: 98 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 6e-06
Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 8/87 (9%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
E K + A+ + + T+ P + + + L + DAI + +
Sbjct: 14 AQEHLKHDNASRALALFEELVETD----PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69
Query: 788 LDENYTKAVSRRAALHEMIRDYTQAAS 814
+ L E+ +A
Sbjct: 70 VAREEGTQ----KDLSELQDAKLKAEG 92
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 45.1 bits (108), Expect = 8e-06
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
GN +K G Y EA+E+Y AL + P A + N A G +AI A+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 788 LDENYTKAVSRRA-ALHEM------IRDYTQA 812
LD N +A A ++ I Y +A
Sbjct: 72 LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 43.9 bits (105), Expect = 2e-05
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
GN +K G Y EA+E+Y AL + P A + N A G +AI A+
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
Query: 788 LDENYTKA 795
LD N +A
Sbjct: 106 LDPNNAEA 113
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 35/220 (15%), Positives = 65/220 (29%), Gaps = 46/220 (20%)
Query: 623 ADALYMLRKYEEAIQLCEHTLPVAEKNFASVL-ADNGSVTYSLARLWRWRLISKSYFCIG 681
A KY+EA LC+ L + EK VL D+ V L L + G
Sbjct: 118 AVLYGKRGKYKEAEPLCKRALEIREK----VLGKDHPDVAKQLNNL------ALLCQNQG 167
Query: 682 KLEVALDLLQKLEQVGSISDR---YGSE---ILESSMSLAGTVRALLHHKSAGNEAFKSG 735
K E Q+ ++ G + + ++ +LA G
Sbjct: 168 KYEEVEYYYQR-----ALEIYQTKLGPDDPNVAKTKNNLASCYLKQ-------------G 209
Query: 736 RYTEAVEHYTVALSTNIESR-----PFAAICFCNRAAALQALGQIADAIADCSLAM---A 787
++ +A Y L+ E + + + G+ D + A
Sbjct: 210 KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA 269
Query: 788 LDEN---YTKAVSRRAALHEMIRDYTQAASDLQRLVSILE 824
+ T + AL+ + A + + + +
Sbjct: 270 CKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 4e-05
Identities = 30/251 (11%), Positives = 74/251 (29%), Gaps = 29/251 (11%)
Query: 458 AYKNNNLTEAEDFYTQGINSVPLSETAGCCIKP----LVLCYSNRAATRISLGRMREALE 513
A ++EA + + + S KP Y+ A + ++ +A +
Sbjct: 1 AIAAQKISEAHEHIAKAEKYLKTSFMKW---KPDYDSAASEYAKAAVAFKNAKQLEQAKD 57
Query: 514 DCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGL 573
+ A N + AAK G + + A +++ + +G
Sbjct: 58 AYLQEAEAHAN-NRSLFHAAKAFEQAGMMLKDLQRMPE-----AVQYIEKASVMYVENG- 110
Query: 574 QKAQKVTEYINCSGKLLEQKTSEAASSALER---INEALSISSCSEKLLEMKADALYMLR 630
++ +GKL+E A ++ + E + +L+ + L +
Sbjct: 111 -TPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ 169
Query: 631 KYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLL 690
K++EA + + ++ + + A +
Sbjct: 170 KFDEAAASLQKEKSMYKEM--ENYPTCYKKCIAQVLV---------QLHRADYVAAQKCV 218
Query: 691 QKLEQVGSISD 701
++ + S
Sbjct: 219 RESYSIPGFSG 229
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 42.0 bits (100), Expect = 5e-05
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
GN +K G Y EA+E+Y AL + P A + N A G +AI A+
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 788 LDENYTKA 795
LD N +A
Sbjct: 72 LDPNNAEA 79
|
| >2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 5e-05
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 879 TAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKE 914
T +KK YRKA L HP K + EQ + E
Sbjct: 46 TPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFME 81
|
| >3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 1e-04
Identities = 8/46 (17%), Positives = 20/46 (43%)
Query: 869 YLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKE 914
+ + + ++K+Y++A L HPDK + + ++
Sbjct: 43 WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEK 88
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 32/223 (14%), Positives = 60/223 (26%), Gaps = 56/223 (25%)
Query: 623 ADALYMLRKYEEAIQLCEHTLPVAEKNF----ASVLADNGSVTYS-LARLWRWRLISKSY 677
A KY+EA LC+ L + EK V + LA L + +
Sbjct: 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAK-----QLNNLALLCQNQ------ 140
Query: 678 FCIGKLEVALDLLQKLEQVGSISDR---YGSE---ILESSMSLAGTVRALLHHKSAGNEA 731
GK E ++ ++ G + + ++ +LA
Sbjct: 141 ---GKAEEVEYYYRR-----ALEIYATRLGPDDPNVAKTKNNLASCYLKQ---------- 182
Query: 732 FKSGRYTEAVEHYTVALSTNIESR-----PFAAICFCNRAAALQALGQIADAIADCSLAM 786
G+Y +A Y L+ E + + ++ + D+
Sbjct: 183 ---GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239
Query: 787 ---ALDEN--YTKAVSRR--AALHEMIRDYTQAASDLQRLVSI 822
A + + R AL+ A +
Sbjct: 240 WYKACKVDSPTV-NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 3e-04
Identities = 29/160 (18%), Positives = 57/160 (35%), Gaps = 29/160 (18%)
Query: 623 ADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGK 682
+ Y+L + +A+ E L +A++ D + + + +Y +G+
Sbjct: 16 GNTHYLLGNFRDAVIAHEQRLLIAKE-----FGDKAAERIAY------SNLGNAYIFLGE 64
Query: 683 LEVALDLLQK-LEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAV 741
E A + +K L + DR +S SL T L Y +A+
Sbjct: 65 FETASEYYKKTLLLARQLKDRAV--EAQSCYSLGNTYTLL-------------QDYEKAI 109
Query: 742 EHYTVAL--STNIESRPFAAICFCNRAAALQALGQIADAI 779
+++ L + ++ R + A ALG A+
Sbjct: 110 DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 149
|
| >1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 3e-04
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 853 LSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKAT 912
LS+M GE + +G+ T +KK YRKA L HPDK + EQ +
Sbjct: 106 LSTMHTVLWAGE--TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIF 163
Query: 913 KE 914
E
Sbjct: 164 ME 165
|
| >1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 4e-04
Identities = 9/52 (17%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 866 LDFYLILGV--KASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKES 915
+D++ + G+ + + ++ ++HPDK + + E A ++S
Sbjct: 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFAS-GSQAEQLAAVQQS 51
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 4e-04
Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 7/107 (6%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQ---IADAIADCSL 784
G Y+ ++ Y AL E+ + A L A A
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRGENAEL----YAALATVLYYQASQHMTAQTRAMIDK 106
Query: 785 AMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKA 831
A+ALD N A+ A+ M +Y QA Q+++ + +
Sbjct: 107 ALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 954 | |||
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.98 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.97 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.96 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.96 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.96 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.96 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.96 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.96 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.95 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.95 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.94 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.94 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.94 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.93 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.93 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.93 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.92 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.92 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.92 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.92 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.92 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.91 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.91 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.9 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.89 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.89 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.89 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.88 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.88 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.86 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.86 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.86 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.86 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.86 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.86 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.86 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.84 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.84 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.84 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.84 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.84 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.83 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.83 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.83 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.83 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.82 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.82 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.82 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.81 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.81 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.81 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.81 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.81 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.8 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.8 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.79 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.79 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.78 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.78 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.77 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.76 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.75 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.74 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.73 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.72 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.72 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.69 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.69 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.69 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.68 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.68 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.68 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.68 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.67 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.67 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.67 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.67 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.66 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.66 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.63 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.61 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.61 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.61 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.6 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.59 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.59 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.59 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.58 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.57 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.56 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.55 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.55 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.55 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.54 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.54 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.53 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.53 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.53 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.52 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.52 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.51 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.51 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.51 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.5 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.5 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.5 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.5 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.49 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.48 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.48 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.48 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.48 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.47 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.47 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.46 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.46 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.46 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.45 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.44 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.44 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.44 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.43 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.42 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.42 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.42 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.41 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.41 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.41 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.41 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.41 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.39 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.39 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.38 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.38 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.38 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.37 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.37 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.37 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.36 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.36 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.35 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.35 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.35 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.33 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.32 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.31 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.31 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.31 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.29 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.29 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.28 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.28 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.28 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.27 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.27 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.26 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.26 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.26 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.25 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.24 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.24 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.23 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.22 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.22 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.21 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.21 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.21 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.2 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.2 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.16 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.14 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.13 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.13 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.09 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.09 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.09 | |
| 2ctq_A | 112 | DNAJ homolog subfamily C member 12; J-domain, chap | 99.09 | |
| 2och_A | 73 | Hypothetical protein DNJ-12; HSP40, J-domain, chap | 99.08 | |
| 2dn9_A | 79 | DNAJ homolog subfamily A member 3; J-domain, TID1, | 99.05 | |
| 1gh6_A | 114 | Large T antigen; tumor suppressor, oncoprotein, an | 99.05 | |
| 2ej7_A | 82 | HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati | 99.05 | |
| 1hdj_A | 77 | Human HSP40, HDJ-1; molecular chaperone; NMR {Homo | 99.04 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.04 | |
| 2lgw_A | 99 | DNAJ homolog subfamily B member 2; J domain, HSJ1A | 99.03 | |
| 2ctp_A | 78 | DNAJ homolog subfamily B member 12; J-domain, chap | 99.02 | |
| 2ctr_A | 88 | DNAJ homolog subfamily B member 9; J-domain, chape | 99.02 | |
| 2ctw_A | 109 | DNAJ homolog subfamily C member 5; J-domain, chape | 99.01 | |
| 2cug_A | 88 | Mkiaa0962 protein; DNAJ-like domain, structural ge | 98.99 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.96 | |
| 2dmx_A | 92 | DNAJ homolog subfamily B member 8; DNAJ J domain, | 98.96 | |
| 2o37_A | 92 | Protein SIS1; HSP40, J-domain, cochaperone, APC900 | 98.96 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.95 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.94 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.94 | |
| 1bq0_A | 103 | DNAJ, HSP40; chaperone, heat shock, protein foldin | 98.92 | |
| 2yua_A | 99 | Williams-beuren syndrome chromosome region 18 prot | 98.92 | |
| 2qsa_A | 109 | DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s | 98.88 | |
| 1wjz_A | 94 | 1700030A21RIK protein; J-domain, DNAJ like protein | 98.87 | |
| 2pf4_E | 174 | Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, | 98.86 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.84 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.83 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.83 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.81 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 98.79 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.78 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.77 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.75 | |
| 1faf_A | 79 | Large T antigen; J domain, HPD motif, anti-paralle | 98.74 | |
| 2l6l_A | 155 | DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, | 98.73 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.71 | |
| 2ys8_A | 90 | RAB-related GTP-binding protein RABJ; DNAJ domain, | 98.69 | |
| 2qwo_B | 92 | Putative tyrosine-protein phosphatase auxilin; cha | 98.67 | |
| 2guz_A | 71 | Mitochondrial import inner membrane translocase su | 98.59 | |
| 1iur_A | 88 | KIAA0730 protein; DNAJ like domain, riken structur | 98.56 | |
| 3lz8_A | 329 | Putative chaperone DNAJ; structure genomics, struc | 98.56 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.52 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.49 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.49 | |
| 1n4c_A | 182 | Auxilin; four helix bundle, protein binding; NMR { | 98.46 | |
| 3ag7_A | 106 | Putative uncharacterized protein F9E10.5; J-domain | 98.45 | |
| 3hho_A | 174 | CO-chaperone protein HSCB homolog; structural geno | 98.45 | |
| 1fpo_A | 171 | HSC20, chaperone protein HSCB; molecular chaperone | 98.43 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.41 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.4 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.4 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.39 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.37 | |
| 3bvo_A | 207 | CO-chaperone protein HSCB, mitochondrial precurso; | 98.34 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.31 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.3 | |
| 3uo3_A | 181 | J-type CO-chaperone JAC1, mitochondrial; structura | 98.3 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.26 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 98.26 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.23 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.23 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.18 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.11 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.03 | |
| 2guz_B | 65 | Mitochondrial import inner membrane translocase su | 97.71 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.48 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.31 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.19 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.1 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.06 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.84 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.69 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.47 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.42 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.33 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.19 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.15 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.15 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.1 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.05 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.93 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.72 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.64 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.35 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.21 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.92 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.68 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.52 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 94.48 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 93.48 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 93.2 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 91.73 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 90.86 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 90.71 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.52 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 90.43 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 90.27 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 90.17 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 89.88 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.79 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 88.79 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 88.69 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 87.32 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.63 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 84.56 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 84.29 |
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-41 Score=385.91 Aligned_cols=424 Identities=20% Similarity=0.254 Sum_probs=363.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 441 TAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT 520 (954)
Q Consensus 441 ~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe 520 (954)
....|..+..+..+|..++..|+|++|+.+|++++..+|.+. .+|+.+|.+|+.+|++++|+..|+++++
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY----------IAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccH----------HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 345678899999999999999999999999999999999986 8999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHH
Q 002199 521 VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASS 600 (954)
Q Consensus 521 l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~e 600 (954)
++|++..++..+|.+|..+|++++|+..|++++.+.|.+... ......+........++..+..++..|+++ +
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 161 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEE----KEAQSQLIKSDEMQRLRSQALNAFGSGDYT---A 161 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCHH---H
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh----HHHHHHHHHHHHHHHHHHHHHHHHHcCCHH---H
Confidence 999999999999999999999999999999999999875310 123333444445566778888999999999 8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc
Q 002199 601 ALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI 680 (954)
Q Consensus 601 AL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l 680 (954)
|+..|.+++...|.++.++..+|.+|...|++++|+..|++++...|.+.. +|..+|.+|...
T Consensus 162 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~ 224 (450)
T 2y4t_A 162 AIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE-----------------AFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHH-----------------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999887644 788999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHH
Q 002199 681 GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAI 760 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~ 760 (954)
|++++|+..|++++.+.|...... ........+..+..+|.++...|++++|+.+|++++.+.|.+......
T Consensus 225 g~~~~A~~~~~~~~~~~p~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 296 (450)
T 2y4t_A 225 GDHELSLSEVRECLKLDQDHKRCF--------AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVR 296 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHH--------HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCChHHHH--------HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHH
Confidence 999999999999999998875522 112223344556678999999999999999999999999765545577
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcc
Q 002199 761 CFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRT 840 (954)
Q Consensus 761 ~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~ 840 (954)
++..+|.++..+|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+.+|++++++. |++.
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------------p~~~ 363 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-------------ENDQ 363 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------------SSCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------------cchH
Confidence 999999999999999999999999999999999999999999999999999999999999994 5555
Q ss_pred hhhhhhHHHHHhhhhhhhhhccCCCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh-------HHHHHHHHHH
Q 002199 841 ISSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD-------QEQEIRKATK 913 (954)
Q Consensus 841 ~~~~~L~~a~~~L~~~e~a~k~~~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~-------~~e~~~~~~~ 913 (954)
..+..+..++..++.. ...++|.+||+.+.++..+++++|+++++++|||+..... ...++.++++
T Consensus 364 ~~~~~l~~~~~~~~~~-------~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~ 436 (450)
T 2y4t_A 364 QIREGLEKAQRLLKQS-------QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKE 436 (450)
T ss_dssp HHHHHHHHHHHHHHHH-------HSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcc-------cchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 5566777766555332 2568999999999999999999999999999999988654 4456778899
Q ss_pred HCCCCCcccccccc
Q 002199 914 ESPQNSHYGRSSDA 927 (954)
Q Consensus 914 ~l~~~~~~r~~yD~ 927 (954)
+|++ +++|+.||.
T Consensus 437 ~L~d-~~~r~~yd~ 449 (450)
T 2y4t_A 437 VLSD-PEMRKKFDD 449 (450)
T ss_dssp HSSG-GGGC-----
T ss_pred HhCC-HHHHHhccC
Confidence 9997 999999996
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-33 Score=306.19 Aligned_cols=350 Identities=18% Similarity=0.235 Sum_probs=309.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
.++.+..+|..++..|+|++|+.+|+++++.+|.+. .+++.+|.+++.+|++++|+..|+++++++|++.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~----------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 71 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY----------IAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT 71 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH----------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc
Confidence 467899999999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhch---hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAA---AVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P---~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
.++..+|.++..+|++++|+..|++++.+.| .+. .+...+........++..+..+...++++ +|+.
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~A~~ 141 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK-------EAESQLVKADEMQRLRSQALDAFDGADYT---AAIT 141 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTTCHH---HHHH
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChH-------HHHHHHHHHHHHHHHHHHHHHHHHccCHH---HHHH
Confidence 9999999999999999999999999999998 542 23334444445566778889999999999 8999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCH
Q 002199 604 RINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKL 683 (954)
Q Consensus 604 ~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~ 683 (954)
.+.+++...|.++.++..+|.++..+|++++|+..+++++...|.+.. .+..+|.+|...|++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 142 FLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE-----------------AFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHH-----------------HHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999999999999999987744 688999999999999
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHH
Q 002199 684 EVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFC 763 (954)
Q Consensus 684 eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~ 763 (954)
++|+..|++++.+.|...... ........+.....+|.+++..|++++|+..|++++...|........++.
T Consensus 205 ~~A~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 276 (359)
T 3ieg_A 205 ELSLSEVRECLKLDQDHKRCF--------AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKE 276 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHH--------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCccchHHH--------HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 999999999999999876522 222333345566678999999999999999999999999776555567788
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhh
Q 002199 764 NRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISS 843 (954)
Q Consensus 764 ~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~ 843 (954)
.+|.++..+|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+.+|++++++. |++..++
T Consensus 277 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-------------p~~~~~~ 343 (359)
T 3ieg_A 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-------------ENDQQIR 343 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------------TTCHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------CCChHHH
Confidence 999999999999999999999999999999999999999999999999999999999995 4455555
Q ss_pred hhhHHHHHhhh
Q 002199 844 RDLRQACRHLS 854 (954)
Q Consensus 844 ~~L~~a~~~L~ 854 (954)
..+..++..++
T Consensus 344 ~~l~~~~~~~~ 354 (359)
T 3ieg_A 344 EGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67777766553
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=311.12 Aligned_cols=325 Identities=16% Similarity=0.177 Sum_probs=263.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
.|..+..+..+|..++..|++++|+..+++++..+|.+. .+|..+|.+|...|++++|+..|++++.++|
T Consensus 29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~----------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 98 (388)
T 1w3b_A 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA----------EAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc
Confidence 455667788888888888888888888888888888876 7888888888888888888888888888888
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 524 NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 524 ~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
++..++..+|.++...|++++|+..|+++++++|+. ...+..++..+...|+++ +|+.
T Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~~~~~l~~~~~~~g~~~---~A~~ 156 (388)
T 1w3b_A 99 DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL-------------------YCVRSDLGNLLKALGRLE---EAKA 156 (388)
T ss_dssp TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC-------------------THHHHHHHHHHHTTSCHH---HHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------------HHHHHHHHHHHHHccCHH---HHHH
Confidence 888888888888888888888888888888888865 344566677777778888 7778
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCH
Q 002199 604 RINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKL 683 (954)
Q Consensus 604 ~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~ 683 (954)
.|.+++...|....++..+|.++...|++++|+..|++++.+.|.... +|..+|.++...|++
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 157 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD-----------------AYINLGNVLKEARIF 219 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHTTTCT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH-----------------HHHHHHHHHHHcCCH
Confidence 888888888888888888888888888888888888888888876643 677788888888888
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHH
Q 002199 684 EVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFC 763 (954)
Q Consensus 684 eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~ 763 (954)
++|+..|++++.+.|.+.. .+..+|.++...|++++|+..|++++.++ |..+.++.
T Consensus 220 ~~A~~~~~~al~~~p~~~~--------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~ 275 (388)
T 1w3b_A 220 DRAVAAYLRALSLSPNHAV--------------------VHGNLACVYYEQGLIDLAIDTYRRAIELQ----PHFPDAYC 275 (388)
T ss_dssp THHHHHHHHHHHHCTTCHH--------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTC----SSCHHHHH
T ss_pred HHHHHHHHHHHhhCcCCHH--------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHHH
Confidence 8888888888888776533 45667888888888888888888888887 66677888
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhh
Q 002199 764 NRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISS 843 (954)
Q Consensus 764 ~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~ 843 (954)
++|.++...|++++|+..|+++++++|.++.++..+|.++...|++++|+..|++++++. |+....+
T Consensus 276 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------p~~~~~~ 342 (388)
T 1w3b_A 276 NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-------------PEFAAAH 342 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-------------TTCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------CCcHHHH
Confidence 888888888888888888888888888888888888888888888888888888888874 4444444
Q ss_pred hhhHHHHHhhh
Q 002199 844 RDLRQACRHLS 854 (954)
Q Consensus 844 ~~L~~a~~~L~ 854 (954)
..++.++..++
T Consensus 343 ~~l~~~~~~~g 353 (388)
T 1w3b_A 343 SNLASVLQQQG 353 (388)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHcC
Confidence 55555544443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=312.69 Aligned_cols=323 Identities=18% Similarity=0.184 Sum_probs=298.4
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..|..+.+|..+|..++..|++++|+.+|++++.++|++. .+|.++|.++...|++++|+..|+++++++
T Consensus 62 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (388)
T 1w3b_A 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI----------DGYINLAAALVAAGDMEGAVQAYVSALQYN 131 (388)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHSCSSHHHHHHHHHHHHC
T ss_pred cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3466788999999999999999999999999999999986 899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
|+...++..+|.++..+|++++|+..|++++...|.+ ...+..++..+...|+++ +|+
T Consensus 132 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~~~~~l~~~~~~~g~~~---~A~ 189 (388)
T 1w3b_A 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------------------AVAWSNLGCVFNAQGEIW---LAI 189 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHTTTCHH---HHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHcCCHH---HHH
Confidence 9999999999999999999999999999999999975 456778888899999998 899
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC
Q 002199 603 ERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGK 682 (954)
Q Consensus 603 ~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~ 682 (954)
..|++++.++|..+.++..+|.++...|++++|+..|++++.+.|.+.. ++..+|.+|...|+
T Consensus 190 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV-----------------VHGNLACVYYEQGL 252 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH-----------------HHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999997744 67889999999999
Q ss_pred HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHH
Q 002199 683 LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICF 762 (954)
Q Consensus 683 ~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~ 762 (954)
+++|+..|++++.+.|.... .+..+|.++...|++++|+.+|++++.+. |.+..++
T Consensus 253 ~~~A~~~~~~al~~~p~~~~--------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~ 308 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQPHFPD--------------------AYCNLANALKEKGSVAEAEDCYNTALRLC----PTHADSL 308 (388)
T ss_dssp HHHHHHHHHHHHHTCSSCHH--------------------HHHHHHHHHHHHSCHHHHHHHHHHHHHHC----TTCHHHH
T ss_pred HHHHHHHHHHHHhhCCCCHH--------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhC----cccHHHH
Confidence 99999999999999887643 46678999999999999999999999998 7788999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchh
Q 002199 763 CNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTIS 842 (954)
Q Consensus 763 ~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~ 842 (954)
.++|.++...|++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|++++++. |....+
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-------------p~~~~a 375 (388)
T 1w3b_A 309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-------------PTFADA 375 (388)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-------------TTCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------CCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999994 455555
Q ss_pred hhhhHHHHH
Q 002199 843 SRDLRQACR 851 (954)
Q Consensus 843 ~~~L~~a~~ 851 (954)
+..++.++.
T Consensus 376 ~~~lg~~~~ 384 (388)
T 1w3b_A 376 YSNMGNTLK 384 (388)
T ss_dssp HHHHHHHHH
T ss_pred HHhHHHHHH
Confidence 556665543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-30 Score=303.02 Aligned_cols=326 Identities=14% Similarity=0.104 Sum_probs=261.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
.+.++.|+.+|..++..|+|++|+.+|++++..+|+ . .+|..+|.+|+.+|++++|+..|+++++++|+
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 71 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-P----------VFYSNLSACYVSVGDLKKVVEMSTKALELKPD 71 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-H----------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-H----------HHHHhHHHHHHHHhhHHHHHHHHHHHhccChH
Confidence 467899999999999999999999999999999994 4 89999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHH---H-------------------------
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQK---A------------------------- 576 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~---~------------------------- 576 (954)
+..+++.+|.+|..+|++++|+..|++++.+.|.................. .
T Consensus 72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 151 (514)
T 2gw1_A 72 YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER 151 (514)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH
Confidence 999999999999999999999999999999988543222111111110000 0
Q ss_pred --------------------------------HhHHHHHHHHHHHHH---hcChHHHHHHHHHHHHHHh-----c--C--
Q 002199 577 --------------------------------QKVTEYINCSGKLLE---QKTSEAASSALERINEALS-----I--S-- 612 (954)
Q Consensus 577 --------------------------------~~~~~~l~~a~~ll~---~g~~~~a~eAL~~l~kaL~-----~--~-- 612 (954)
.....++..+..++. .++++ +|+..+.+++. + .
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~ 228 (514)
T 2gw1_A 152 KDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYD---KADESFTKAARLFEEQLDKNNE 228 (514)
T ss_dssp -----CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHH---HHHHHHHHHHHHHHHHTTTSTT
T ss_pred HhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHH---HHHHHHHHHHHHhhhhhccCcc
Confidence 003344555555555 56666 78888888887 5 3
Q ss_pred -----CCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 002199 613 -----SCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVAL 687 (954)
Q Consensus 613 -----P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl 687 (954)
|..+.++..+|.++...|++++|+..|++++...|. .. .+..+|.+|...|++++|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~-----------------~~~~l~~~~~~~~~~~~A~ 290 (514)
T 2gw1_A 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VN-----------------SYIYMALIMADRNDSTEYY 290 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HH-----------------HHHHHHHHHHTSSCCTTGG
T ss_pred ccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HH-----------------HHHHHHHHHHHCCCHHHHH
Confidence 445678888999999999999999999999988875 32 6777888888888888888
Q ss_pred HHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHH
Q 002199 688 DLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAA 767 (954)
Q Consensus 688 ~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~ 767 (954)
..|++++.+.|.+.. .+..+|.++...|++++|+.+|++++.+. |....++..+|.
T Consensus 291 ~~~~~~~~~~~~~~~--------------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~ 346 (514)
T 2gw1_A 291 NYFDKALKLDSNNSS--------------------VYYHRGQMNFILQNYDQAGKDFDKAKELD----PENIFPYIQLAC 346 (514)
T ss_dssp GHHHHHHTTCTTCTH--------------------HHHHHHHHHHHTTCTTHHHHHHHHHHHTC----SSCSHHHHHHHH
T ss_pred HHHHHHhhcCcCCHH--------------------HHHHHHHHHHHhCCHHHHHHHHHHHHHhC----hhhHHHHHHHHH
Confidence 888888888876643 45567888888888888888888888877 455667888888
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 768 ALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 768 ~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
++...|++++|+..|++++.+.|.++.+++.+|.++..+|++++|+..|++++++.|..
T Consensus 347 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 347 LAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 88888888888888888888888888888888888888888888888888888887775
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-30 Score=300.93 Aligned_cols=333 Identities=17% Similarity=0.144 Sum_probs=267.7
Q ss_pred CCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 439 SPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMA 518 (954)
Q Consensus 439 ~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kA 518 (954)
......+..++.|..+|..++..|+|++|+.+|++++..+|.+. .+|.++|.+|+.+|++++|+..|+++
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~a 85 (537)
T 3fp2_A 16 LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP----------VFYSNISACYISTGDLEKVIEFTTKA 85 (537)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc----------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455677899999999999999999999999999999999997 99999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhH-------HHHHHHHHHHHHHHhH------------
Q 002199 519 ATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDR-------RITIEAADGLQKAQKV------------ 579 (954)
Q Consensus 519 Lel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~-------~~~~ea~~~l~~~~~~------------ 579 (954)
++++|++..+++.+|.++..+|++++|+..|+ ++.+.|+..... .....+...+......
T Consensus 86 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 164 (537)
T 3fp2_A 86 LEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN 164 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCH
T ss_pred HhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH
Confidence 99999999999999999999999999999996 888877643211 0111111111111000
Q ss_pred ----------------------------HHHHHHHHHHH----------HhcChHHHHHHHHHHHHHHhcCCCCHH----
Q 002199 580 ----------------------------TEYINCSGKLL----------EQKTSEAASSALERINEALSISSCSEK---- 617 (954)
Q Consensus 580 ----------------------------~~~l~~a~~ll----------~~g~~~~a~eAL~~l~kaL~~~P~~~~---- 617 (954)
...+..+...+ ..++++ +|+..|.+++...|.++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~---~A~~~~~~~l~~~p~~~~~~~~ 241 (537)
T 3fp2_A 165 TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLT---KSTDMYHSLLSANTVDDPLREN 241 (537)
T ss_dssp HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHH---HHHHHHHHHHC--CCCHHHHHH
T ss_pred hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHH---HHHHHHHHHHHHCCCcchhhHH
Confidence 00011111111 122344 889999999999999855
Q ss_pred ---HHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 618 ---LLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLE 694 (954)
Q Consensus 618 ---~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal 694 (954)
++..+|.++...|++++|+..|++++.+.|. .. .+..+|.+|...|++++|+.+|++++
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PN-----------------SYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HH-----------------HHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-ch-----------------HHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 5777888999999999999999999999886 32 67789999999999999999999999
Q ss_pred hhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcC
Q 002199 695 QVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQ 774 (954)
Q Consensus 695 ~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~ 774 (954)
.+.|.+.. .+..+|.++...|++++|+..|++++.+. |....++..+|.++..+|+
T Consensus 304 ~~~~~~~~--------------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~g~ 359 (537)
T 3fp2_A 304 DLNPEYPP--------------------TYYHRGQMYFILQDYKNAKEDFQKAQSLN----PENVYPYIQLACLLYKQGK 359 (537)
T ss_dssp HHCTTCHH--------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCSHHHHHHHHHHHHTTC
T ss_pred ccCCCCHH--------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCC
Confidence 99887643 56678999999999999999999999998 6667889999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 775 IADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 775 ~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
+++|+..|+++++++|.++.++..+|.++..+|++++|+..|++++++.|...
T Consensus 360 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 360 FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 99999999999999999999999999999999999999999999999988753
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-28 Score=280.64 Aligned_cols=344 Identities=12% Similarity=0.057 Sum_probs=287.6
Q ss_pred hhcccHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHH
Q 002199 422 KVQNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAAT 501 (954)
Q Consensus 422 k~~~~~~~~e~~~~~~~~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~ 501 (954)
..+...+....+.... ...|..+..|..+|..++..|++++|+.+|+++++.+|.+. .++..+|.+
T Consensus 38 ~~g~~~~A~~~~~~~l----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~l~~~ 103 (450)
T 2y4t_A 38 AAGQLADALSQFHAAV----DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT----------AARLQRGHL 103 (450)
T ss_dssp HTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH----HhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH----------HHHHHHHHH
Confidence 3344445544444422 23455688999999999999999999999999999999986 899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCcH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHH
Q 002199 502 RISLGRMREALEDCMMAATVDPNFL---KVYMRA------------AKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRIT 566 (954)
Q Consensus 502 y~~lg~~eeAl~~~~kALel~P~~~---~a~~~L------------A~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~ 566 (954)
|..+|++++|+..|+++++++|.+. .++..+ |.++...|++++|+..|++++.+.|.+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------- 176 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD------- 176 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Confidence 9999999999999999999999988 776555 777999999999999999999998875
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhh
Q 002199 567 IEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVA 646 (954)
Q Consensus 567 ~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~ 646 (954)
...+..++..+...|+++ +|+..|.+++...|.++.++..+|.+|...|++++|+..|++++.+.
T Consensus 177 ------------~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 177 ------------AELRELRAECFIKEGEPR---KAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp ------------HHHHHHHHHHHHHTTCGG---GGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ------------hHHHHHHHHHHHHCCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 455778889999999999 78999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002199 647 EKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKS 726 (954)
Q Consensus 647 p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 726 (954)
|.+....... .....+..+..+|.++...|++++|+.+|++++.+.|.+... ....+..
T Consensus 242 p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~----------------~~~~~~~ 300 (450)
T 2y4t_A 242 QDHKRCFAHY-----KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEY----------------TVRSKER 300 (450)
T ss_dssp TTCHHHHHHH-----HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHH----------------HHHHHHH
T ss_pred CChHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHH----------------HHHHHHH
Confidence 8764421100 001111223455999999999999999999999999875431 1235677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--
Q 002199 727 AGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHE-- 804 (954)
Q Consensus 727 lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~-- 804 (954)
+|.++...|++++|+.+|++++.+. |....+|..+|.++..+|++++|+..|+++++++|++..++..++.+..
T Consensus 301 l~~~~~~~g~~~~A~~~~~~a~~~~----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVCSEVLQME----PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376 (450)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHh
Confidence 8999999999999999999999998 7788999999999999999999999999999999999999999996543
Q ss_pred ----------Hhc-----CHHHHHHHHHH-HHHHhhhh
Q 002199 805 ----------MIR-----DYTQAASDLQR-LVSILENQ 826 (954)
Q Consensus 805 ----------~lg-----~~eeAi~~~ek-AL~l~p~~ 826 (954)
.+| +.+++.+.|++ +++..|+.
T Consensus 377 ~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred hcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 344 55677788876 77776553
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=266.86 Aligned_cols=302 Identities=14% Similarity=0.095 Sum_probs=269.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
+.....+..+|..++..|+|++|+.+|++++..+|.+. .++..++.+++.+|++++|+..++++++.+|.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 88 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHA----------SCLPVHIGTLVELNKANELFYLSHKLVDLYPS 88 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----------TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh----------hhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC
Confidence 34456788999999999999999999999999999997 78889999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 525 FLKVYMRAAKCHLVLG-EIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG-~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
++.+++.+|.++...| ++++|+.+|++++.++|.+ ...+..++..+...|+++ +|+.
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------------------~~~~~~l~~~~~~~~~~~---~A~~ 146 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY-------------------GPAWIAYGHSFAVESEHD---QAMA 146 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTC-------------------THHHHHHHHHHHHHTCHH---HHHH
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCcc-------------------HHHHHHHHHHHHHccCHH---HHHH
Confidence 9999999999999999 9999999999999999875 445778899999999999 8999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCH
Q 002199 604 RINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKL 683 (954)
Q Consensus 604 ~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~ 683 (954)
.+.+++...|.....+..+|.++...|++++|+..+++++...|.+.. .+..+|.+|...|++
T Consensus 147 ~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------~~~~l~~~~~~~~~~ 209 (330)
T 3hym_B 147 AYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF-----------------VMHEVGVVAFQNGEW 209 (330)
T ss_dssp HHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH-----------------HHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChH-----------------HHHHHHHHHHHcccH
Confidence 999999999999999999999999999999999999999999987743 678899999999999
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHH
Q 002199 684 EVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFC 763 (954)
Q Consensus 684 eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~ 763 (954)
++|+.++++++.+.+....... .......+..+|.++...|++++|+.+|++++.+. |....++.
T Consensus 210 ~~A~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~ 274 (330)
T 3hym_B 210 KTAEKWFLDALEKIKAIGNEVT-----------VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI----PQNASTYS 274 (330)
T ss_dssp HHHHHHHHHHHHHHTTTSCSCT-----------TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCSHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccc-----------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC----ccchHHHH
Confidence 9999999999998643221100 00012356779999999999999999999999998 67788999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhcCHH
Q 002199 764 NRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH-EMIRDYT 810 (954)
Q Consensus 764 ~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly-~~lg~~e 810 (954)
.+|.++..+|++++|+.+|+++++++|+++.++..++.++ ..+|+.+
T Consensus 275 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 275 AIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999999999999999999999999999998 5666643
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-27 Score=281.97 Aligned_cols=332 Identities=13% Similarity=0.060 Sum_probs=266.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHH--------------------------
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNR-------------------------- 498 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~l-------------------------- 498 (954)
+..+..|..+|..|.+.|++++|+.+|+++++.+|.+. .++..+
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----------~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY----------EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhh----------HHHHHHHHhhcccchhHHHHHHhcCCcccccc
Confidence 45788999999999999999999999999999999875 333333
Q ss_pred ------------HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHH
Q 002199 499 ------------AATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRIT 566 (954)
Q Consensus 499 ------------A~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~ 566 (954)
+.+|...|++++|+..|+++++. |.+..++..+|.+|...|++++|+..|++++...|.+.......
T Consensus 267 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 345 (597)
T 2xpi_A 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH 345 (597)
T ss_dssp GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHH
Confidence 33444567777777777777776 56677777777777777777777777777777776543322211
Q ss_pred HHH----------HHHHHHHH-----hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Q 002199 567 IEA----------ADGLQKAQ-----KVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRK 631 (954)
Q Consensus 567 ~ea----------~~~l~~~~-----~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~ 631 (954)
... ...+.... ....+..++..+...|+++ +|+..|.+++.+.|.+..++..++.+|...|+
T Consensus 346 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 422 (597)
T 2xpi_A 346 LASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKIS---EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE 422 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 111 11111111 1445667778888888888 78888888888899999999999999999999
Q ss_pred HHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHH
Q 002199 632 YEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESS 711 (954)
Q Consensus 632 ~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~ 711 (954)
+++|+..|++++...|.+.. .|..+|.+|...|++++|+.+|++++.+.|.+..
T Consensus 423 ~~~A~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------- 476 (597)
T 2xpi_A 423 HDQAISAYTTAARLFQGTHL-----------------PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL--------- 476 (597)
T ss_dssp HHHHHHHHHHHHHTTTTCSH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH---------
T ss_pred HHHHHHHHHHHHHhCccchH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---------
Confidence 99999999999888876643 6778899999999999999999999988876532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC--Cchh-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 712 MSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIE--SRPF-AAICFCNRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 712 ~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~--~~p~-~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
.+..+|.++...|++++|+.+|++++.+.|. ..|. ...+|..+|.+|...|++++|+..|++++++
T Consensus 477 -----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 477 -----------LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp -----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 5677899999999999999999999998542 1244 3889999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 789 DENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 789 dP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
+|+++.++..+|.+|...|++++|+..|++++++.|++.
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence 999999999999999999999999999999999955543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-28 Score=282.65 Aligned_cols=335 Identities=14% Similarity=0.121 Sum_probs=253.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
.|..+..|..+|.+++..|+|++|+..|++++.++|.+. .+++.+|.++..+|++++|+..|+ ++.++|
T Consensus 55 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~ 123 (537)
T 3fp2_A 55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHS----------KALLRRASANESLGNFTDAMFDLS-VLSLNG 123 (537)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHTCHHHHHHHHH-HHC---
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchH----------HHHHHHHHHHHHcCCHHHHHHHHH-HHhcCC
Confidence 456678999999999999999999999999999999987 899999999999999999988874 665555
Q ss_pred CcHHHH--------------------------------------------------------------------HHH---
Q 002199 524 NFLKVY--------------------------------------------------------------------MRA--- 532 (954)
Q Consensus 524 ~~~~a~--------------------------------------------------------------------~~L--- 532 (954)
+....+ ..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 203 (537)
T 3fp2_A 124 DFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRL 203 (537)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHH
Confidence 432211 000
Q ss_pred -----HHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHH-----------------HHHHHHHHHHh----HHHHHHHH
Q 002199 533 -----AKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITI-----------------EAADGLQKAQK----VTEYINCS 586 (954)
Q Consensus 533 -----A~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~-----------------ea~~~l~~~~~----~~~~l~~a 586 (954)
+......|++++|+..|+++++..|.+........ ++...+.++.. ...++.++
T Consensus 204 ~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~ 283 (537)
T 3fp2_A 204 YSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLA 283 (537)
T ss_dssp HTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 11112223555555566665555554322111111 11111111110 24456667
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHH
Q 002199 587 GKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLAR 666 (954)
Q Consensus 587 ~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~ 666 (954)
..+...++++ +|+..+.+++...|.++.++..+|.++...|++++|+..|++++.+.|.+..
T Consensus 284 ~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------- 345 (537)
T 3fp2_A 284 LTLADKENSQ---EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVY--------------- 345 (537)
T ss_dssp HHTCCSSCCH---HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSH---------------
T ss_pred HHHHHhcCHH---HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---------------
Confidence 7777788888 7888888888889988999999999999999999999999999988887643
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002199 667 LWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTV 746 (954)
Q Consensus 667 l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~k 746 (954)
++..+|.+|...|++++|+.+|++++.+.|.+.. .+..+|.++...|++++|+.+|++
T Consensus 346 --~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------------~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 346 --PYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE--------------------VPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH--------------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH--------------------HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 6778899999999999999999999988887644 456689999999999999999999
Q ss_pred HHhhccCCch--hhHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 002199 747 ALSTNIESRP--FAAICFCNRAAALQAL----------GQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAAS 814 (954)
Q Consensus 747 AL~l~~~~~p--~~a~~~~~lA~~y~~l----------g~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~ 814 (954)
++.+.|.... .....++.+|.++..+ |++++|+..|+++++++|+++.+++.+|.+|..+|++++|+.
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 9999854332 2334577889999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHH
Q 002199 815 DLQRLVSILENQSAE 829 (954)
Q Consensus 815 ~~ekAL~l~p~~~~~ 829 (954)
+|++++++.|...+.
T Consensus 484 ~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 484 LFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHHC--CHHH
T ss_pred HHHHHHHhCCCcHHH
Confidence 999999998766543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-27 Score=259.96 Aligned_cols=308 Identities=13% Similarity=0.058 Sum_probs=271.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
.|.....+..+|..++..|++++|+..|+++++..|.+. .++..+|.++..+|++++|+..|+++++++|
T Consensus 33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 33 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT----------AARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102 (359)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc----------hHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 455678999999999999999999999999999999987 8999999999999999999999999999999
Q ss_pred ---CcHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002199 524 ---NFLKVYMRA------------AKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGK 588 (954)
Q Consensus 524 ---~~~~a~~~L------------A~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ 588 (954)
++..++..+ |.++...|++++|+..|++++...|.+ ...+..++..
T Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------~~~~~~~~~~ 163 (359)
T 3ieg_A 103 SEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD-------------------AELRELRAEC 163 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-------------------hHHHHHHHHH
Confidence 888888877 799999999999999999999999875 3457788899
Q ss_pred HHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHH
Q 002199 589 LLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLW 668 (954)
Q Consensus 589 ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~ 668 (954)
+...|+++ +|+..+.+++...|.++.++..+|.++...|++++|+..++++++..|.+...... -.....+.
T Consensus 164 ~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ 235 (359)
T 3ieg_A 164 FIKEGEPR---KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH-----YKQVKKLN 235 (359)
T ss_dssp HHHTTCHH---HHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH-----HHHHHHHH
T ss_pred HHHCCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHH-----HHHHHHHH
Confidence 99999999 89999999999999999999999999999999999999999999999876442100 00011122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
....+|.++...|++++|+..|++++...|.+... ....+..+|.++...|++++|+.+|++++
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 299 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEY----------------TVRSKERICHCFSKDEKPVEAIRICSEVL 299 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHH----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH----------------HHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34466999999999999999999999999876431 12346678999999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 002199 749 STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRD 808 (954)
Q Consensus 749 ~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~ 808 (954)
.++ |..+.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++
T Consensus 300 ~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 300 QME----PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HhC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 998 77889999999999999999999999999999999999999999988877654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=261.23 Aligned_cols=297 Identities=11% Similarity=0.061 Sum_probs=261.3
Q ss_pred HHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002199 472 TQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHK 551 (954)
Q Consensus 472 ~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yek 551 (954)
...+...|.+. .++..+|.+++..|++++|+..|++++..+|.+..++..++.++..+|++++|+..+++
T Consensus 12 ~~~~~~~~~~~----------~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 81 (330)
T 3hym_B 12 PESVDGLQENL----------DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHK 81 (330)
T ss_dssp --------CCC----------TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhhchhhH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34555566666 78999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Q 002199 552 LLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQK-TSEAASSALERINEALSISSCSEKLLEMKADALYMLR 630 (954)
Q Consensus 552 aL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g-~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg 630 (954)
+++.+|.+ ...++.++..+...+ +++ +|+..+.+++...|..+.++..+|.++...|
T Consensus 82 ~~~~~~~~-------------------~~~~~~l~~~~~~~~~~~~---~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 139 (330)
T 3hym_B 82 LVDLYPSN-------------------PVSWFAVGCYYLMVGHKNE---HARRYLSKATTLEKTYGPAWIAYGHSFAVES 139 (330)
T ss_dssp HHHHCTTS-------------------THHHHHHHHHHHHSCSCHH---HHHHHHHHHHTTCTTCTHHHHHHHHHHHHHT
T ss_pred HHHhCcCC-------------------HHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHhCCccHHHHHHHHHHHHHcc
Confidence 99999875 455788888999999 888 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHH
Q 002199 631 KYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILES 710 (954)
Q Consensus 631 ~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~ 710 (954)
++++|+..|+++++..|.+.. .+..+|.+|...|++++|+.+|++++.+.|.+..
T Consensus 140 ~~~~A~~~~~~a~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------- 194 (330)
T 3hym_B 140 EHDQAMAAYFTAAQLMKGCHL-----------------PMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF-------- 194 (330)
T ss_dssp CHHHHHHHHHHHHHHTTTCSH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH--------
T ss_pred CHHHHHHHHHHHHHhccccHH-----------------HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChH--------
Confidence 999999999999999987643 5777999999999999999999999999887633
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC-----chhhHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002199 711 SMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES-----RPFAAICFCNRAAALQALGQIADAIADCSLA 785 (954)
Q Consensus 711 ~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~-----~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekA 785 (954)
.+..+|.++...|++++|+.+|++++.+.+.. .+....++.++|.++..+|++++|+.+|+++
T Consensus 195 ------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 262 (330)
T 3hym_B 195 ------------VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262 (330)
T ss_dssp ------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 56678999999999999999999999986422 1556789999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHH
Q 002199 786 MALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQAC 850 (954)
Q Consensus 786 L~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~ 850 (954)
++++|+++.++..+|.+|..+|++++|+.+|++++++. |++...+..+..+.
T Consensus 263 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 263 LVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-------------RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-------------SCCHHHHHHHHHHH
T ss_pred HhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-------------CCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999994 55555555666654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=277.98 Aligned_cols=373 Identities=13% Similarity=-0.002 Sum_probs=277.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD-- 522 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~-- 522 (954)
+..+..+..+|.+++.+|+|++|+++|++|+++.+.... .......+.+|.++|.+|..+|++++|+.++++++++.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~-~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHA-DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSG-GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCc-cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 344677889999999999999999999999987432210 00111235889999999999999999999999999873
Q ss_pred ------CCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Q 002199 523 ------PNFLKVYMRAAKCHLVLG--EIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKT 594 (954)
Q Consensus 523 ------P~~~~a~~~LA~iy~~lG--~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~ 594 (954)
+..+.++..+|.++...| +|++|+.+|+++++++|++ ...+..++..++..+.
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~-------------------~~~~~~~~~~~~~l~~ 187 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN-------------------PEFTSGLAIASYRLDN 187 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC-------------------HHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHhcC
Confidence 456889999998887765 6999999999999999986 2334455555444444
Q ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHH
Q 002199 595 SEAASSALERINEALSISSCSEKLLEMKADALYML----RKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRW 670 (954)
Q Consensus 595 ~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~l----g~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~ 670 (954)
+..+.+|++.+++++.++|.++.++..+|..+..+ +++++|+.++++++.+.|.... ++
T Consensus 188 ~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~-----------------~~ 250 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTD-----------------VL 250 (472)
T ss_dssp SCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHH-----------------HH
T ss_pred chHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHH-----------------HH
Confidence 43334799999999999999999999888776654 6788999999999999987754 67
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 671 RLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALST 750 (954)
Q Consensus 671 ~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l 750 (954)
..+|.+|...|++++|+..|++++++.|.+......+....... ............+......+.+++|+.+|++++.+
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK-VFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-HHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 88999999999999999999999999998765332211100000 00000111112233333445688999999999999
Q ss_pred ccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---HHHHHHHH-HHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 751 NIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTK---AVSRRAAL-HEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 751 ~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~---al~~lA~l-y~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
+ |....++..+|.+|..+|++++|+.+|+++|.++|+... +++.+|.+ +..+|++++|+.+|++++++.|+.
T Consensus 330 ~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 330 N----DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp C----TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred C----CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 8 777788999999999999999999999999999987654 45666655 457899999999999999998876
Q ss_pred HHHH-----------HhhcCCCCcchhhhhhHHHHHhhhhhhhh
Q 002199 827 SAEK-----------AKQSRSPGRTISSRDLRQACRHLSSMEED 859 (954)
Q Consensus 827 ~~~~-----------~~~~~~P~~~~~~~~L~~a~~~L~~~e~a 859 (954)
.... .....+|.+..++..|+.++..++..+++
T Consensus 406 ~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A 449 (472)
T 4g1t_A 406 REKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQA 449 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5431 11134777777777888887777666655
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-28 Score=271.44 Aligned_cols=302 Identities=13% Similarity=0.044 Sum_probs=259.5
Q ss_pred HHHHHcCCHHHHHH-HHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002199 456 NQAYKNNNLTEAED-FYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAK 534 (954)
Q Consensus 456 ~~~~~~g~y~eAi~-~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~ 534 (954)
..+...|+|++|+. .|++++.+.|.++. ..+..++.+|.+++..|++++|+..|+++++++|.+..+++.+|.
T Consensus 33 ~~~~~~~~~~~a~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 106 (368)
T 1fch_A 33 EAHPWLSDYDDLTSATYDKGYQFEEENPL------RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGT 106 (368)
T ss_dssp -------------CHHHHCCCCCCSSCTT------TTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhhhhhHHHhcCCCCcc------cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 35667799999999 99999999987741 112568899999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCC
Q 002199 535 CHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSC 614 (954)
Q Consensus 535 iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~ 614 (954)
+|..+|++++|+..|++++.++|.+ ...+..++..+...|+++ +|+..+.+++.+.|.
T Consensus 107 ~~~~~g~~~~A~~~~~~al~~~~~~-------------------~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~ 164 (368)
T 1fch_A 107 TQAENEQELLAISALRRCLELKPDN-------------------QTALMALAVSFTNESLQR---QACEILRDWLRYTPA 164 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHTTCHH---HHHHHHHHHHHTSTT
T ss_pred HHHHCcCHHHHHHHHHHHHhcCCCC-------------------HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCcC
Confidence 9999999999999999999999875 456788889999999999 899999999999998
Q ss_pred CHHHHH----------------HHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHH
Q 002199 615 SEKLLE----------------MKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYF 678 (954)
Q Consensus 615 ~~~~~~----------------~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~ 678 (954)
....+. .++.++ ..|++++|+..|++++.+.|.... ...+..+|.+|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~---------------~~~~~~l~~~~~ 228 (368)
T 1fch_A 165 YAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSID---------------PDVQCGLGVLFN 228 (368)
T ss_dssp TGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCC---------------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCccc---------------HHHHHHHHHHHH
Confidence 876664 456666 999999999999999999987310 126788999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhh
Q 002199 679 CIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFA 758 (954)
Q Consensus 679 ~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~ 758 (954)
..|++++|+.+|++++.+.|.+.. .+..+|.++...|++++|+.+|++++.+. |..
T Consensus 229 ~~g~~~~A~~~~~~al~~~~~~~~--------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~----~~~ 284 (368)
T 1fch_A 229 LSGEYDKAVDCFTAALSVRPNDYL--------------------LWNKLGATLANGNQSEEAVAAYRRALELQ----PGY 284 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHH--------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTC
T ss_pred HcCCHHHHHHHHHHHHHhCcCCHH--------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCc
Confidence 999999999999999999887633 56779999999999999999999999998 778
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 759 AICFCNRAAALQALGQIADAIADCSLAMALDENY-----------TKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 759 a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~-----------~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
..+++++|.+|..+|++++|+.+|++++.+.|++ ..+|..+|.+|..+|++++|...++++++.+++
T Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 362 (368)
T 1fch_A 285 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLT 362 (368)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHH
Confidence 8999999999999999999999999999999988 899999999999999999999999999988654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-27 Score=272.39 Aligned_cols=338 Identities=12% Similarity=0.034 Sum_probs=253.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN--- 524 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~--- 524 (954)
+..|..+|.+++..|+|++|+..|+++++.+|.+. .+|+.+|.+|..+|++++|+..|++++.+.|.
T Consensus 39 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 108 (514)
T 2gw1_A 39 PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYS----------KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDA 108 (514)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHH----------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence 67899999999999999999999999999999987 89999999999999999999999999988863
Q ss_pred ----------------------------------------------------------------------------cHHH
Q 002199 525 ----------------------------------------------------------------------------FLKV 528 (954)
Q Consensus 525 ----------------------------------------------------------------------------~~~a 528 (954)
+..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (514)
T 2gw1_A 109 SIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADK 188 (514)
T ss_dssp GTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHH
Confidence 2777
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHh-----h--chhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHH
Q 002199 529 YMRAAKCHLV---LGEIENAQHYYHKLLN-----S--AAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAA 598 (954)
Q Consensus 529 ~~~LA~iy~~---lG~~eeAl~~yekaL~-----l--~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a 598 (954)
++.+|.+++. .|++++|+..|++++. + .|.+... .......++.++..+...|+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-- 254 (514)
T 2gw1_A 189 ELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL------------KEKLAISLEHTGIFKFLKNDPL-- 254 (514)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH------------HHHHHHHHHHHHHHHHHSSCHH--
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc------------ChHHHHHHHHHHHHHHHCCCHH--
Confidence 8888988887 8999999999999999 5 4432100 0112344555566666666666
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHH
Q 002199 599 SSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYF 678 (954)
Q Consensus 599 ~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~ 678 (954)
+|+..+.+++...|. ..++..+|.++...|++++|+..+++++...|.+.. ++..+|.+|.
T Consensus 255 -~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~ 315 (514)
T 2gw1_A 255 -GAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSS-----------------VYYHRGQMNF 315 (514)
T ss_dssp -HHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTH-----------------HHHHHHHHHH
T ss_pred -HHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHH-----------------HHHHHHHHHH
Confidence 566666666666666 666666666666666666666666666666655432 4555666666
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCcchhhHHH---------HHHHHHHHH-----HHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 679 CIGKLEVALDLLQKLEQVGSISDRYGSEIL---------ESSMSLAGT-----VRALLHHKSAGNEAFKSGRYTEAVEHY 744 (954)
Q Consensus 679 ~lG~~eeAl~~l~kal~l~p~~~~~~~~~l---------~~~~~l~~~-----~~~~~~~~~lG~~~~~~g~~eeAi~~y 744 (954)
..|++++|+..|++++.+.|.+......+. ......... ......+..+|.++...|++++|+.+|
T Consensus 316 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 316 ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 666666666666666666555433221110 000000000 011245677899999999999999999
Q ss_pred HHHHhhccCCch--hhHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002199 745 TVALSTNIESRP--FAAICFCNRAAALQA---LGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRL 819 (954)
Q Consensus 745 ~kAL~l~~~~~p--~~a~~~~~lA~~y~~---lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekA 819 (954)
++++.+.|.... ....+++.+|.++.. +|++++|+..|++++.++|+++.+++.+|.+|..+|++++|+..|+++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999843321 114489999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhHH
Q 002199 820 VSILENQSA 828 (954)
Q Consensus 820 L~l~p~~~~ 828 (954)
+++.|++.+
T Consensus 476 ~~~~~~~~~ 484 (514)
T 2gw1_A 476 ADLARTMEE 484 (514)
T ss_dssp HHHCSSHHH
T ss_pred HHhccccHH
Confidence 999766544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-26 Score=276.46 Aligned_cols=349 Identities=13% Similarity=0.054 Sum_probs=278.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------
Q 002199 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD------ 522 (954)
Q Consensus 449 e~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~------ 522 (954)
..+..+|..++..|++++|+..|++++.. |.+. .++..++.+|...|++++|+..|++.....
T Consensus 118 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 186 (597)
T 2xpi_A 118 NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSS----------ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNA 186 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCH----------HHHHHHHHHHHHTTCHHHHHHHHCSSCTTC------
T ss_pred hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccch----------hHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccc
Confidence 56788999999999999999999998766 4444 799999999999999999999998643322
Q ss_pred ----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHH---------------------------
Q 002199 523 ----------PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRI--------------------------- 565 (954)
Q Consensus 523 ----------P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~--------------------------- 565 (954)
|.+..+|+.+|.+|...|++++|+..|+++++.+|.+......
T Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (597)
T 2xpi_A 187 NKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266 (597)
T ss_dssp ----CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG
T ss_pred ccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccc
Confidence 2348899999999999999999999999999999865322111
Q ss_pred ---------------------HHHHHHHHHHH----HhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHH
Q 002199 566 ---------------------TIEAADGLQKA----QKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLE 620 (954)
Q Consensus 566 ---------------------~~ea~~~l~~~----~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~ 620 (954)
..++...+.+. .....+..++..+...|+++ +|+..|++++...|.+..++.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~ 343 (597)
T 2xpi_A 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFI---DVLAITTKILEIDPYNLDVYP 343 (597)
T ss_dssp GHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHCTTCCTTHH
T ss_pred hHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHcCcccHHHHH
Confidence 11111111111 22455666777777788877 677778888888888877888
Q ss_pred HHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002199 621 MKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSIS 700 (954)
Q Consensus 621 ~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~ 700 (954)
.++.++...|++++|+..+++++...|.+.. .|..+|.+|...|++++|+.+|++++.+.|.+
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 406 (597)
T 2xpi_A 344 LHLASLHESGEKNKLYLISNDLVDRHPEKAV-----------------TWLAVGIYYLCVNKISEARRYFSKSSTMDPQF 406 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCcccHH-----------------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 8888888888888888888888877766533 67778999999999999999999998887765
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHH
Q 002199 701 DRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIA 780 (954)
Q Consensus 701 ~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~ 780 (954)
. ..+..+|.+|...|++++|++.|++++... |.+..++..+|.+|...|++++|+.
T Consensus 407 ~--------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 407 G--------------------PAWIGFAHSFAIEGEHDQAISAYTTAARLF----QGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp H--------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred H--------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 3 356778999999999999999999999998 6678899999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCc-chhhhhhHHHHHhhhhhhhh
Q 002199 781 DCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGR-TISSRDLRQACRHLSSMEED 859 (954)
Q Consensus 781 ~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~-~~~~~~L~~a~~~L~~~e~a 859 (954)
.|++++++.|.++.+|..+|.+|...|++++|+..|++++++.|+. ...|.. ...+..+..++..++..+.+
T Consensus 463 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 463 YLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT-------QSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-------CCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc-------ccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999999999999999999999999999999999997642 123443 34556666666666555544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.6e-27 Score=270.41 Aligned_cols=323 Identities=15% Similarity=0.035 Sum_probs=244.6
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHh
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG--RMREALEDCMMAAT 520 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg--~~eeAl~~~~kALe 520 (954)
..+..+..|..+|.+|+..|+|++|+.+|++++++.+.... ......+.++.++|.+++..| +|++|+.+|+++++
T Consensus 89 ~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~ 166 (472)
T 4g1t_A 89 AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS--PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE 166 (472)
T ss_dssp CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc--ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 34566788999999999999999999999999998654321 112223578888888887765 69999999999999
Q ss_pred cCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH----Hhc
Q 002199 521 VDPNFLKVYMRAAKCHLV---LGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLL----EQK 593 (954)
Q Consensus 521 l~P~~~~a~~~LA~iy~~---lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll----~~g 593 (954)
++|+++.++..+|.++.. .+++++|++.|+++++++|.+.. .+..++..+. ..+
T Consensus 167 ~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~-------------------~~~~l~~~~~~~~~~~~ 227 (472)
T 4g1t_A 167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY-------------------LKVLLALKLHKMREEGE 227 (472)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH-------------------HHHHHHHHHHHCC----
T ss_pred hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH-------------------HHHHHHHHHHHHHhhhh
Confidence 999999999999988654 57789999999999999997622 2233333332 334
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHH
Q 002199 594 TSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLI 673 (954)
Q Consensus 594 ~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~L 673 (954)
+++ +|+..+++++.+.|..+.++..+|.+|...|++++|+..|+++++..|++.. ++..+
T Consensus 228 ~~~---~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~l 287 (472)
T 4g1t_A 228 EEG---EGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY-----------------LHCQI 287 (472)
T ss_dssp --C---HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-----------------HHHHH
T ss_pred HHH---HHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHH-----------------HHHHH
Confidence 555 7889999999999999999999999999999999999999999999998754 55666
Q ss_pred HHHHHH-------------------cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002199 674 SKSYFC-------------------IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS 734 (954)
Q Consensus 674 g~~y~~-------------------lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~ 734 (954)
|.+|.. .+.+++|+..|++++.+.|.... .+..+|.++...
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------------~~~~lg~~~~~~ 347 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFR--------------------VCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCC--------------------CHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhh--------------------hhhhHHHHHHHh
Confidence 666643 23467899999999999887765 455689999999
Q ss_pred CCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHh------------------------C
Q 002199 735 GRYTEAVEHYTVALSTNIESRPFAAICFCNRAAA-LQALGQIADAIADCSLAMAL------------------------D 789 (954)
Q Consensus 735 g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~-y~~lg~~eeAi~~~ekAL~l------------------------d 789 (954)
|++++|+.+|++++.+.+.. .....+++.+|.+ +..+|++++|+.+|++++.+ +
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~ 426 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTP-VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKN 426 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCH-HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999987532 2334456677754 45789999999999998876 4
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 790 ENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 790 P~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
|.++.+|..+|.+|..+|++++|+++|++||++.|..+
T Consensus 427 p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 427 GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp C-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 66678999999999999999999999999999966544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=260.73 Aligned_cols=282 Identities=15% Similarity=0.045 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
+..+..|+.+|..++..|+|++|+.+|++++..+|.+. .+|..+|.+|..+|++++|+..|+++++++|+
T Consensus 62 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 131 (365)
T 4eqf_A 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDA----------EAWQFLGITQAENENEQAAIVALQRCLELQPN 131 (365)
T ss_dssp TTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCH----------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 34566799999999999999999999999999999987 89999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHH
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALER 604 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~ 604 (954)
+..++..+|.+|..+|++++|+..|++++.+.|...... ..+
T Consensus 132 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-------------------~~~------------------- 173 (365)
T 4eqf_A 132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLV-------------------KNK------------------- 173 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------------------------------------
T ss_pred CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHH-------------------hhh-------------------
Confidence 999999999999999999999999999999988642110 000
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhh--hhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC
Q 002199 605 INEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEK--NFASVLADNGSVTYSLARLWRWRLISKSYFCIGK 682 (954)
Q Consensus 605 l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~--~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~ 682 (954)
.....++..+|.++...|++++|+.+|++++.+.|. +.. .+..+|.+|...|+
T Consensus 174 --------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~~~l~~~~~~~g~ 228 (365)
T 4eqf_A 174 --------KGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD-----------------LQTGLGVLFHLSGE 228 (365)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHHSCSSCCHH-----------------HHHHHHHHHHHHTC
T ss_pred --------ccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHH-----------------HHHHHHHHHHHCCC
Confidence 012334566788888888999999999999888876 322 57788889999999
Q ss_pred HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHH
Q 002199 683 LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICF 762 (954)
Q Consensus 683 ~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~ 762 (954)
+++|+.+|++++.+.|.+.. .+..+|.++...|++++|+.+|++++.+. |..+.++
T Consensus 229 ~~~A~~~~~~al~~~p~~~~--------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~ 284 (365)
T 4eqf_A 229 FNRAIDAFNAALTVRPEDYS--------------------LWNRLGATLANGDRSEEAVEAYTRALEIQ----PGFIRSR 284 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHH--------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHH--------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHH
Confidence 99999999999888876533 56678999999999999999999999988 6778899
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 763 CNRAAALQALGQIADAIADCSLAMALDEN------------YTKAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 763 ~~lA~~y~~lg~~eeAi~~~ekAL~ldP~------------~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
+++|.+|..+|++++|+.+|++++++.|+ ...+|..++.++..+|+.+.|...+++.+..+
T Consensus 285 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~ 357 (365)
T 4eqf_A 285 YNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357 (365)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHH
Confidence 99999999999999999999999998877 36788999999999999999888877765553
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.8e-26 Score=247.62 Aligned_cols=286 Identities=16% Similarity=0.077 Sum_probs=247.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
....++.+|..++..|+|++|+.+|+++++.+|.+. .++..+|.++...|++++|+..++++++++|.+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 89 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPERE----------EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI 89 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH
Confidence 445688999999999999999999999999999986 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERIN 606 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~ 606 (954)
.++..+|.+|..+|++++|+..|++++...|........ .
T Consensus 90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------------------~--------------------- 129 (327)
T 3cv0_A 90 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSV-------------------N--------------------- 129 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHH-------------------H---------------------
Confidence 999999999999999999999999999998865221100 0
Q ss_pred HHHhcCCCCHHHHHHH-HH-HHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHH
Q 002199 607 EALSISSCSEKLLEMK-AD-ALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLE 684 (954)
Q Consensus 607 kaL~~~P~~~~~~~~l-A~-~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~e 684 (954)
....|..... ..+ +. ++...|++++|+..+++++...|.+.. .+..+|.+|...|+++
T Consensus 130 --~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~la~~~~~~~~~~ 189 (327)
T 3cv0_A 130 --LQADVDIDDL-NVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ-----------------LHASLGVLYNLSNNYD 189 (327)
T ss_dssp -------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHH-----------------HHHHHHHHHHHTTCHH
T ss_pred --hHHHHHHHHH-HHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHhccHH
Confidence 0001111111 234 34 588899999999999999999887643 6788999999999999
Q ss_pred HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHH
Q 002199 685 VALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCN 764 (954)
Q Consensus 685 eAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~ 764 (954)
+|+.++++++.+.|.+.. .+..+|.++...|++++|+.+|++++.+. |....++..
T Consensus 190 ~A~~~~~~~~~~~~~~~~--------------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~ 245 (327)
T 3cv0_A 190 SAAANLRRAVELRPDDAQ--------------------LWNKLGATLANGNRPQEALDAYNRALDIN----PGYVRVMYN 245 (327)
T ss_dssp HHHHHHHHHHHHCTTCHH--------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHH--------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHH
Confidence 999999999999886633 56678999999999999999999999998 777889999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 765 RAAALQALGQIADAIADCSLAMALDEN------------YTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 765 lA~~y~~lg~~eeAi~~~ekAL~ldP~------------~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
+|.++..+|++++|+..|++++.+.|. +..++..+|.++..+|++++|...+++++++.|+.
T Consensus 246 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 999999999999999999999999999 89999999999999999999999999999998765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=251.38 Aligned_cols=288 Identities=15% Similarity=0.101 Sum_probs=243.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
.+..++.+|..++..|+|++|+.+|+++++.+|.+. .+|..+|.+|..+|++++|+..|+++++++|.+.
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 132 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM----------EAWQYLGTTQAENEQELLAISALRRCLELKPDNQ 132 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH
Confidence 356789999999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERIN 606 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~ 606 (954)
.++..+|.+|..+|++++|+..|++++.+.|............... ............++..++++ +|+..+.
T Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~A~~~~~ 205 (368)
T 1fch_A 133 TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG----AGLGPSKRILGSLLSDSLFL---EVKELFL 205 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------------------CTTHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhh----hcccHHHHHHHHHhhcccHH---HHHHHHH
Confidence 9999999999999999999999999999999764332111000000 00011111222233667777 8999999
Q ss_pred HHHhcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHH
Q 002199 607 EALSISSC--SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLE 684 (954)
Q Consensus 607 kaL~~~P~--~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~e 684 (954)
+++...|. .+.++..+|.++...|++++|+..|++++.+.|.+.. +|..+|.+|...|+++
T Consensus 206 ~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 206 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL-----------------LWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHH
T ss_pred HHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH-----------------HHHHHHHHHHHcCCHH
Confidence 99999999 8999999999999999999999999999999987643 6889999999999999
Q ss_pred HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC-------chh
Q 002199 685 VALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES-------RPF 757 (954)
Q Consensus 685 eAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~-------~p~ 757 (954)
+|+..|++++.+.|.... .+..+|.++...|++++|+.+|++++.+.|.. .+.
T Consensus 269 ~A~~~~~~al~~~~~~~~--------------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIR--------------------SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp HHHHHHHHHHHHCTTCHH--------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred HHHHHHHHHHHhCCCcHH--------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 999999999999886633 56779999999999999999999999998543 122
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 758 AAICFCNRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 758 ~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
...+|..+|.+|..+|++++|...+.++++.
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 3889999999999999999999999887754
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.7e-25 Score=246.49 Aligned_cols=324 Identities=16% Similarity=0.153 Sum_probs=263.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV----- 521 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel----- 521 (954)
.+..+..+|..++..|+|++|+.+|++++++.|.+. ..++.+|..+|.+|+.+|++++|+..+++++.+
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 81 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 81 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Confidence 467889999999999999999999999999998874 234578999999999999999999999999987
Q ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC------
Q 002199 522 -DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKT------ 594 (954)
Q Consensus 522 -~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~------ 594 (954)
.|....++..+|.+|..+|++++|+.+|++++.+.|..... ......+..++..+...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~~~~ 148 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------VGEARALYNLGNVYHAKGKSFGCPG 148 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------HHHHHHHHHHHHHHHHHHHTCC---
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------cchHHHHHHHHHHHHHcCCcccccc
Confidence 35568899999999999999999999999999987753211 1124456777888888888
Q ss_pred --------------hHHHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhh
Q 002199 595 --------------SEAASSALERINEALSI------SSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVL 654 (954)
Q Consensus 595 --------------~~~a~eAL~~l~kaL~~------~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~ 654 (954)
++ +|+..+.+++.+ .|....++..+|.++..+|++++|+..+++++.+.+....
T Consensus 149 ~~~~~~~~~~a~~~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--- 222 (406)
T 3sf4_A 149 PQDVGEFPEEVRDALQ---AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD--- 222 (406)
T ss_dssp ----CCCCHHHHHHHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC---
T ss_pred cchhhhhhhhHHHHHH---HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC---
Confidence 77 677777777765 3344678999999999999999999999999999876422
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 002199 655 ADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS 734 (954)
Q Consensus 655 ~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~ 734 (954)
......++..+|.+|...|++++|+.+|++++.+.+.... .......+..+|.++...
T Consensus 223 --------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~la~~~~~~ 280 (406)
T 3sf4_A 223 --------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD--------------RAVEAQSCYSLGNTYTLL 280 (406)
T ss_dssp --------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHT
T ss_pred --------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC--------------chHHHHHHHHHHHHHHHh
Confidence 1223447889999999999999999999999987554322 222355677899999999
Q ss_pred CCHHHHHHHHHHHHhhccC--CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHh
Q 002199 735 GRYTEAVEHYTVALSTNIE--SRPFAAICFCNRAAALQALGQIADAIADCSLAMALD------ENYTKAVSRRAALHEMI 806 (954)
Q Consensus 735 g~~eeAi~~y~kAL~l~~~--~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld------P~~~~al~~lA~ly~~l 806 (954)
|++++|+.+|++++.+.+. ..+....++..+|.+|..+|++++|+.+|++++++. +....++..+|.++..+
T Consensus 281 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (406)
T 3sf4_A 281 QDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVL 360 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHh
Confidence 9999999999999998642 235568899999999999999999999999999884 34478899999999999
Q ss_pred cCHHHHHHHHH
Q 002199 807 RDYTQAASDLQ 817 (954)
Q Consensus 807 g~~eeAi~~~e 817 (954)
|+...+...+.
T Consensus 361 g~~~~~~~~~~ 371 (406)
T 3sf4_A 361 GLSYSTNNSIM 371 (406)
T ss_dssp HTTSCC-----
T ss_pred hHhHHHHHHHH
Confidence 98755444433
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.5e-25 Score=244.95 Aligned_cols=295 Identities=13% Similarity=0.047 Sum_probs=227.3
Q ss_pred HHHHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002199 512 LEDCMMAATVDPNFL----KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSG 587 (954)
Q Consensus 512 l~~~~kALel~P~~~----~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~ 587 (954)
+..+.+++...+.++ ..++.+|.++...|++++|+..|++++.++|.+ ...++.++.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~~~~~lg~ 107 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD-------------------AEAWQFLGI 107 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC-------------------HHHHHHHHH
Confidence 355566666655544 448999999999999999999999999998875 455788888
Q ss_pred HHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHH
Q 002199 588 KLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARL 667 (954)
Q Consensus 588 ~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l 667 (954)
.+...|+++ +|+..|.+++.++|.++.++..+|.+|..+|++++|+..|++++.+.|.+........ ...
T Consensus 108 ~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-------~~~ 177 (365)
T 4eqf_A 108 TQAENENEQ---AAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK-------GSP 177 (365)
T ss_dssp HHHHTTCHH---HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------------
T ss_pred HHHHCCCHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhc-------cch
Confidence 889999988 7888899999999999999999999999999999999999999999997654211100 001
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 668 WRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVA 747 (954)
Q Consensus 668 ~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kA 747 (954)
..+..+|.++...|++++|+.+|++++.+.|.... ...+..+|.++...|++++|+.+|+++
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~~~l~~~~~~~g~~~~A~~~~~~a 239 (365)
T 4eqf_A 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID------------------PDLQTGLGVLFHLSGEFNRAIDAFNAA 239 (365)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHSCSSCC------------------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC------------------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 13446799999999999999999999999987322 125667899999999999999999999
Q ss_pred HhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 748 LSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 748 L~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
+.+. |..+.+|.++|.+|..+|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+.+|++++++.|+..
T Consensus 240 l~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 315 (365)
T 4eqf_A 240 LTVR----PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR 315 (365)
T ss_dssp HHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred HHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence 9998 777899999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred HHHHhhcCCCCcchhhhhhHHHHHhhhhhhh
Q 002199 828 AEKAKQSRSPGRTISSRDLRQACRHLSSMEE 858 (954)
Q Consensus 828 ~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~ 858 (954)
...... ........+..|+.+...++..+.
T Consensus 316 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 345 (365)
T 4eqf_A 316 NQQQVP-HPAISGNIWAALRIALSLMDQPEL 345 (365)
T ss_dssp ------------CHHHHHHHHHHHHHTCHHH
T ss_pred CCcccc-hhhhHHHHHHHHHHHHHHcCcHHH
Confidence 421000 011234556777777766655443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.93 E-value=7e-24 Score=241.37 Aligned_cols=304 Identities=15% Similarity=0.162 Sum_probs=252.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV-- 521 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel-- 521 (954)
.+..+..+..+|..++..|+|++|+.+|++++++.|.+. ...+.+|..+|.+|+.+|++++|+..|++++++
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 117 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK 117 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999999874 233468999999999999999999999999998
Q ss_pred ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHH
Q 002199 522 ----DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEA 597 (954)
Q Consensus 522 ----~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~ 597 (954)
.|....++..+|.+|..+|++++|+.+|++++.+.+..
T Consensus 118 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------------------- 159 (411)
T 4a1s_A 118 SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL-------------------------------------- 159 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------------------------
T ss_pred HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--------------------------------------
Confidence 57778999999999999999999999999998864321
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-----------------HHHHHHHHHHhchhhhhhhhhhhhccCcc
Q 002199 598 ASSALERINEALSISSCSEKLLEMKADALYMLRK-----------------YEEAIQLCEHTLPVAEKNFASVLADNGSV 660 (954)
Q Consensus 598 a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~-----------------~eeAi~~~ekaL~l~p~~~~~~~~~~~~~ 660 (954)
...|....++..+|.+|..+|+ +++|+.++++++.+.+....
T Consensus 160 ------------~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~--------- 218 (411)
T 4a1s_A 160 ------------GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD--------- 218 (411)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred ------------hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC---------
Confidence 0011234567788888888888 99999999999887654321
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 002199 661 TYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEA 740 (954)
Q Consensus 661 ~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeA 740 (954)
......++..+|.+|...|++++|+.+|++++.+.+.... .......+..+|.++...|++++|
T Consensus 219 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~la~~~~~~g~~~~A 282 (411)
T 4a1s_A 219 --RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD--------------RAAERRANSNLGNSHIFLGQFEDA 282 (411)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred --HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC--------------cHHHHHHHHHHHHHHHHCcCHHHH
Confidence 1223447889999999999999999999999887543221 122345678899999999999999
Q ss_pred HHHHHHHHhhccC--CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCHHHH
Q 002199 741 VEHYTVALSTNIE--SRPFAAICFCNRAAALQALGQIADAIADCSLAMALDEN------YTKAVSRRAALHEMIRDYTQA 812 (954)
Q Consensus 741 i~~y~kAL~l~~~--~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~------~~~al~~lA~ly~~lg~~eeA 812 (954)
+.+|++++.+.+. .......++..+|.+|..+|++++|+.+|++++.+.+. ...++..+|.+|..+|++++|
T Consensus 283 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 362 (411)
T 4a1s_A 283 AEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERA 362 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHH
Confidence 9999999998742 22345789999999999999999999999999988543 356899999999999999999
Q ss_pred HHHHHHHHHHhhhhHH
Q 002199 813 ASDLQRLVSILENQSA 828 (954)
Q Consensus 813 i~~~ekAL~l~p~~~~ 828 (954)
+.+|++++++.+....
T Consensus 363 ~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 363 LKYAEQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHhhccc
Confidence 9999999999766543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-24 Score=243.96 Aligned_cols=257 Identities=12% Similarity=0.054 Sum_probs=230.9
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Q 002199 442 AAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGR-MREALEDCMMAAT 520 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~-~eeAl~~~~kALe 520 (954)
...|..+++|..+|..+...|++++|+.+|+++|.++|.+. .+|+++|.++..+|+ +++|+.+|+++|+
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~----------~a~~~~g~~l~~~g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY----------TVWHFRRVLLKSLQKDLHEEMNYITAIIE 160 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH----------HHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999997 999999999999997 9999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHH
Q 002199 521 VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASS 600 (954)
Q Consensus 521 l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~e 600 (954)
++|++..+|+.+|.++..+|++++|+..|+++|.++|.+ ...|..++..+...|+++ +
T Consensus 161 l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-------------------~~a~~~lg~~~~~~g~~~---e 218 (382)
T 2h6f_A 161 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-------------------YHAWQHRQWVIQEFKLWD---N 218 (382)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHHTCCT---T
T ss_pred HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-------------------HHHHHHHHHHHHHcCChH---H
Confidence 999999999999999999999999999999999999987 567889999999999999 8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCHHHH-----HHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHH
Q 002199 601 ALERINEALSISSCSEKLLEMKADALYM-LRKYEEA-----IQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLIS 674 (954)
Q Consensus 601 AL~~l~kaL~~~P~~~~~~~~lA~~~~~-lg~~eeA-----i~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg 674 (954)
|+..|+++|.++|.+..+|..+|.+|.. .|.+++| +.+|+++|.++|.+.. +|+.+|
T Consensus 219 Al~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~-----------------a~~~l~ 281 (382)
T 2h6f_A 219 ELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES-----------------AWNYLK 281 (382)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH-----------------HHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHH-----------------HHHHHH
Confidence 9999999999999999999999999999 5555888 5999999999998855 788999
Q ss_pred HHHHHcC--CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------CHHHHHHH
Q 002199 675 KSYFCIG--KLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSG---------RYTEAVEH 743 (954)
Q Consensus 675 ~~y~~lG--~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g---------~~eeAi~~ 743 (954)
.++...| ++++|+..++++ ..+|.+.. ++..+|.+|...+ .+++|+.+
T Consensus 282 ~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~--------------------al~~La~~~~~~~~~~~~~~~~~~~~A~~~ 340 (382)
T 2h6f_A 282 GILQDRGLSKYPNLLNQLLDL-QPSHSSPY--------------------LIAFLVDIYEDMLENQCDNKEDILNKALEL 340 (382)
T ss_dssp HHHTTTCGGGCHHHHHHHHHH-TTTCCCHH--------------------HHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHccCccchHHHHHHHHHh-ccCCCCHH--------------------HHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 9999988 699999999887 77776543 4555788887763 35889999
Q ss_pred HHHH-HhhccCCchhhHHHHHHHHHHHHHh
Q 002199 744 YTVA-LSTNIESRPFAAICFCNRAAALQAL 772 (954)
Q Consensus 744 y~kA-L~l~~~~~p~~a~~~~~lA~~y~~l 772 (954)
|+++ ++++ |.....|..++.++..+
T Consensus 341 ~~~l~~~~D----P~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 341 CEILAKEKD----TIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHTTC----GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC----chhHHHHHHHHHHHHHH
Confidence 9998 8888 78888888888777654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=248.32 Aligned_cols=251 Identities=9% Similarity=0.030 Sum_probs=225.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhchhhhhhHHHHHHHH
Q 002199 492 VLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGE-IENAQHYYHKLLNSAAAVCLDRRITIEAA 570 (954)
Q Consensus 492 a~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~-~eeAl~~yekaL~l~P~~~~~~~~~~ea~ 570 (954)
..+|.++|.++..+|++++|+..|+++|+++|++..+|+.+|.++..+|+ +++|+.+|++++.++|.+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~----------- 165 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN----------- 165 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC-----------
Confidence 48999999999999999999999999999999999999999999999997 999999999999999986
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhh
Q 002199 571 DGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNF 650 (954)
Q Consensus 571 ~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~ 650 (954)
...|+.++..+...|+++ +|+..|++++.++|.+..+|..+|.++..+|++++|+..|+++|+++|.+.
T Consensus 166 --------~~a~~~~g~~~~~~g~~~---eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~ 234 (382)
T 2h6f_A 166 --------YQVWHHRRVLVEWLRDPS---QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNN 234 (382)
T ss_dssp --------HHHHHHHHHHHHHHTCCT---THHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred --------HHHHHHHHHHHHHccCHH---HHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Confidence 567889999999999999 899999999999999999999999999999999999999999999999886
Q ss_pred hhhhhccCcchhhHHHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 002199 651 ASVLADNGSVTYSLARLWRWRLISKSYFC-IGKLEVA-----LDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHH 724 (954)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~-lG~~eeA-----l~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~ 724 (954)
. +|+.+|.+|.. .|.+++| +.+|++++.++|.+.. +|
T Consensus 235 ~-----------------a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~--------------------a~ 277 (382)
T 2h6f_A 235 S-----------------VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES--------------------AW 277 (382)
T ss_dssp H-----------------HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH--------------------HH
T ss_pred H-----------------HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHH--------------------HH
Confidence 5 78999999999 5555777 5889999999887744 56
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhc---------CHHHHHHHHHHH-HHhCCCC
Q 002199 725 KSAGNEAFKSG--RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALG---------QIADAIADCSLA-MALDENY 792 (954)
Q Consensus 725 ~~lG~~~~~~g--~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg---------~~eeAi~~~ekA-L~ldP~~ 792 (954)
..+|.++...| ++++|++.+.++ ..+ |....++..+|.+|..++ .+++|+.+|+++ ++++|..
T Consensus 278 ~~l~~ll~~~g~~~~~~a~~~~~~~-~~~----p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 278 NYLKGILQDRGLSKYPNLLNQLLDL-QPS----HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp HHHHHHHTTTCGGGCHHHHHHHHHH-TTT----CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHccCccchHHHHHHHHHh-ccC----CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchh
Confidence 77888888877 689999988887 655 778889999999998875 358999999999 8999999
Q ss_pred HHHHHHHHHHHHHh
Q 002199 793 TKAVSRRAALHEMI 806 (954)
Q Consensus 793 ~~al~~lA~ly~~l 806 (954)
...|..++.++..+
T Consensus 353 ~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 353 KEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888877654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=220.83 Aligned_cols=102 Identities=22% Similarity=0.296 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
+..++.|..+|..++..|+|++|+.+|+++++.+ .+. .++..+|.+|..+|++++|+..++++++++|.
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~----------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 70 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDI----------TYLNNRAAAEYEKGEYETAISTLNDAVEQGRE 70 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCT----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccH----------HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 4567888888888888888888888888888888 655 78888888888888888888888888888876
Q ss_pred c-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhch
Q 002199 525 F-------LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAA 557 (954)
Q Consensus 525 ~-------~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P 557 (954)
. +.++..+|.+|..+|++++|+..|++++.+.|
T Consensus 71 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 110 (258)
T 3uq3_A 71 MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR 110 (258)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc
Confidence 6 67888888888888888888888888877655
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=229.04 Aligned_cols=298 Identities=15% Similarity=0.122 Sum_probs=243.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV----- 521 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel----- 521 (954)
.+..+...|..++..|+|++|+.+|+++++..|.+. ...+.++..+|.+|...|++++|+..+++++.+
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 77 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 77 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccH------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc
Confidence 467889999999999999999999999999998874 233578999999999999999999999999987
Q ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHH
Q 002199 522 -DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASS 600 (954)
Q Consensus 522 -~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~e 600 (954)
.|....++..+|.+|..+|++++|+..|++++.+.+... +.
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------------~~----- 119 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN---------------------------------DK----- 119 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------------------------------CH-----
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc---------------------------------Cc-----
Confidence 455688999999999999999999999999998755320 00
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccC--------------------HHHHHHHHHHhchhhhhhhhhhhhccCcc
Q 002199 601 ALERINEALSISSCSEKLLEMKADALYMLRK--------------------YEEAIQLCEHTLPVAEKNFASVLADNGSV 660 (954)
Q Consensus 601 AL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~--------------------~eeAi~~~ekaL~l~p~~~~~~~~~~~~~ 660 (954)
+....++..+|.++..+|+ +++|+..+++++.+.+....
T Consensus 120 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~--------- 178 (338)
T 3ro2_A 120 ------------VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD--------- 178 (338)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred ------------hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC---------
Confidence 0113456677888888888 89999999998887554311
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 002199 661 TYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEA 740 (954)
Q Consensus 661 ~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeA 740 (954)
.......+..+|.+|...|++++|+.++++++.+.+.... .......+..+|.++...|++++|
T Consensus 179 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 179 --RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD--------------KAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp --HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred --HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC--------------hHHHHHHHHHHHHHHHHcCCHHHH
Confidence 1222347888999999999999999999999876432211 223345778899999999999999
Q ss_pred HHHHHHHHhhccC--CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCHHHH
Q 002199 741 VEHYTVALSTNIE--SRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY------TKAVSRRAALHEMIRDYTQA 812 (954)
Q Consensus 741 i~~y~kAL~l~~~--~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~------~~al~~lA~ly~~lg~~eeA 812 (954)
+.+|++++.+.+. ..+....++..+|.++..+|++++|+.++++++.+.+.. ..++..+|.+|..+|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9999999988642 234458899999999999999999999999999886543 56889999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 002199 813 ASDLQRLVSILEN 825 (954)
Q Consensus 813 i~~~ekAL~l~p~ 825 (954)
+.+|++++++.+.
T Consensus 323 ~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 323 MHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-23 Score=235.61 Aligned_cols=294 Identities=15% Similarity=0.085 Sum_probs=245.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHH
Q 002199 492 VLCYSNRAATRISLGRMREALEDCMMAATVDPNF----LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITI 567 (954)
Q Consensus 492 a~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~----~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ 567 (954)
+..+..+|.+++..|++++|+..|++++++.|.+ ..++..+|.+|..+|++++|+.+|++++.+.+....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------ 82 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD------ 82 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc------
Confidence 5788999999999999999999999999999988 468999999999999999999999999987543210
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHccC----------
Q 002199 568 EAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCS------EKLLEMKADALYMLRK---------- 631 (954)
Q Consensus 568 ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~------~~~~~~lA~~~~~lg~---------- 631 (954)
.......+..++..+...|+++ +|+..+.+++.+.|.. ..++..+|.+|...|+
T Consensus 83 -------~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 152 (406)
T 3sf4_A 83 -------QLGEAKASGNLGNTLKVLGNFD---EAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDV 152 (406)
T ss_dssp -------HHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------
T ss_pred -------cHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchh
Confidence 1122456778899999999999 7888888888776532 5589999999999999
Q ss_pred ----------HHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q 002199 632 ----------YEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISD 701 (954)
Q Consensus 632 ----------~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~ 701 (954)
+++|+..+++++.+.+.... .......+..+|.+|...|++++|+.++++++.+.+...
T Consensus 153 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 153 GEFPEEVRDALQAAVDFYEENLSLVTALGD-----------RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhccC-----------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999988654311 122234788999999999999999999999998755433
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC--CchhhHHHHHHHHHHHHHhcCHHHHH
Q 002199 702 RYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIE--SRPFAAICFCNRAAALQALGQIADAI 779 (954)
Q Consensus 702 ~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~--~~p~~a~~~~~lA~~y~~lg~~eeAi 779 (954)
. ....+..+..+|.++...|++++|+.+|++++.+.+. ..+....++..+|.+|..+|++++|+
T Consensus 222 ~--------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 287 (406)
T 3sf4_A 222 D--------------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 287 (406)
T ss_dssp C--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred C--------------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 2 1223457788999999999999999999999988642 22344789999999999999999999
Q ss_pred HHHHHHHHhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 780 ADCSLAMALDENY------TKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 780 ~~~ekAL~ldP~~------~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.+|++++.+.+.. ..++..+|.+|..+|++++|+.+|++++++.+..
T Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 288 DYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 9999999885543 7789999999999999999999999999997654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-23 Score=222.35 Aligned_cols=256 Identities=14% Similarity=0.021 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF-- 525 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~-- 525 (954)
.+.++.+|..++..|+|++|+.+|+++++.+|.+. .++..+|.+|..+|++++|+..|+++++ .|.+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~ 71 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP----------YIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK 71 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS----------TTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH----------HHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh
Confidence 35677888888888888888888888888888876 6888888888888888888888888888 3322
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHH
Q 002199 526 --LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603 (954)
Q Consensus 526 --~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~ 603 (954)
..++..+|.++..+|++++|+.+|+++++++|
T Consensus 72 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~---------------------------------------------- 105 (272)
T 3u4t_A 72 AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT---------------------------------------------- 105 (272)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc----------------------------------------------
Confidence 45588888888888888888888887766544
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCH
Q 002199 604 RINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKL 683 (954)
Q Consensus 604 ~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~ 683 (954)
..+.++..+|.++..+|++++|+..|++++.+.|.+.. .|+.+|...+..+++
T Consensus 106 ----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 106 ----------TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK-----------------VFYELGQAYYYNKEY 158 (272)
T ss_dssp ----------TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHH-----------------HHHHHHHHHHHTTCH
T ss_pred ----------ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHH-----------------HHHHHHHHHHHHHHH
Confidence 45567788899999999999999999999998877643 677888444555699
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhccCCc----h
Q 002199 684 EVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGR---YTEAVEHYTVALSTNIESR----P 756 (954)
Q Consensus 684 eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~---~eeAi~~y~kAL~l~~~~~----p 756 (954)
++|+..|++++++.|.+.. .+..+|.++...++ +++|+..|++++.+....+ .
T Consensus 159 ~~A~~~~~~a~~~~p~~~~--------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 218 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYI--------------------GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKD 218 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHH--------------------HHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHH
T ss_pred HHHHHHHHHHHHhCccchH--------------------HHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchH
Confidence 9999999999998887632 45567888888888 8889999999998752211 2
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 002199 757 FAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIR 807 (954)
Q Consensus 757 ~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg 807 (954)
....++..+|.+|..+|++++|+.+|+++++++|+++.++-.++.+....+
T Consensus 219 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 219 ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 245789999999999999999999999999999999999988877765443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-23 Score=216.88 Aligned_cols=253 Identities=19% Similarity=0.199 Sum_probs=215.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHH
Q 002199 491 LVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAA 570 (954)
Q Consensus 491 la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~ 570 (954)
.+..|..+|.+++..|++++|+..|+++++++ .++.+++.+|.+|..+|++++|+..|++++.+.|....+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------- 74 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRAD-------- 74 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC--------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccc--------
Confidence 35899999999999999999999999999999 899999999999999999999999999999987753100
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhh
Q 002199 571 DGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNF 650 (954)
Q Consensus 571 ~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~ 650 (954)
+ +..+.++..+|.++..+|++++|+..|++++.+.|.
T Consensus 75 ------------------------~-----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-- 111 (258)
T 3uq3_A 75 ------------------------Y-----------------KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-- 111 (258)
T ss_dssp ------------------------H-----------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--
T ss_pred ------------------------h-----------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--
Confidence 0 011457788899999999999999999999988763
Q ss_pred hhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 651 ASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE 730 (954)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~ 730 (954)
+.++..+|++++|+..+++++...|. ....+..+|.+
T Consensus 112 -----------------------~~~~~~~~~~~~a~~~~~~~~~~~~~--------------------~~~~~~~~~~~ 148 (258)
T 3uq3_A 112 -----------------------ADILTKLRNAEKELKKAEAEAYVNPE--------------------KAEEARLEGKE 148 (258)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHHHHCCHH--------------------HHHHHHHHHHH
T ss_pred -----------------------hHHHHHHhHHHHHHHHHHHHHHcCcc--------------------hHHHHHHHHHH
Confidence 34566778899999999999886543 23467778999
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 002199 731 AFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYT 810 (954)
Q Consensus 731 ~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~e 810 (954)
++..|++++|+.+|++++.+. |....++..+|.++..+|++++|+..|+++++++|+++.+++.+|.+|..+|+++
T Consensus 149 ~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIKRA----PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999998 6778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHH
Q 002199 811 QAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQA 849 (954)
Q Consensus 811 eAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a 849 (954)
+|+.+|++++++.|... ..|.+...+..+..+
T Consensus 225 ~A~~~~~~a~~~~~~~~-------~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 225 SALETLDAARTKDAEVN-------NGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHHHHHH-------TTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhChhhc-------CCCchHHHHHHHHHh
Confidence 99999999999985432 135555444444443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.8e-23 Score=218.30 Aligned_cols=244 Identities=15% Similarity=0.107 Sum_probs=214.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
..++.+|.+++..|++++|+..|+++++++|.+..+++.+|.+|..+|++++|+..|++++. .|.+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~------------- 69 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNA------------- 69 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCT-------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCc-------------
Confidence 57889999999999999999999999999999999999999999999999999999999988 3321
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~ 652 (954)
......++..+|.++..+|++++|+..|++++++.|.+..
T Consensus 70 ---------------------------------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~- 109 (272)
T 3u4t_A 70 ---------------------------------------TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLD- 109 (272)
T ss_dssp ---------------------------------------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH-
T ss_pred ---------------------------------------hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHH-
Confidence 0113567889999999999999999999999999997754
Q ss_pred hhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 653 VLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAF 732 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~ 732 (954)
+|..+|.+|...|++++|+.+|++++.+.|.+.. .+..+|...+
T Consensus 110 ----------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------------~~~~l~~~~~ 153 (272)
T 3u4t_A 110 ----------------MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK--------------------VFYELGQAYY 153 (272)
T ss_dssp ----------------HHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHH--------------------HHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHH--------------------HHHHHHHHHH
Confidence 7889999999999999999999999999887643 5667885556
Q ss_pred HcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhC---CC-----CHHHHHHHHH
Q 002199 733 KSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQ---IADAIADCSLAMALD---EN-----YTKAVSRRAA 801 (954)
Q Consensus 733 ~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~---~eeAi~~~ekAL~ld---P~-----~~~al~~lA~ 801 (954)
..+++++|+.+|++++.+. |....+++.+|.++..+++ +++|+..|++++++. |+ ...++..+|.
T Consensus 154 ~~~~~~~A~~~~~~a~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 229 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLELK----PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAY 229 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC----ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 6679999999999999999 6778999999999999999 999999999999886 54 3478999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHhhhhHHHH
Q 002199 802 LHEMIRDYTQAASDLQRLVSILENQSAEK 830 (954)
Q Consensus 802 ly~~lg~~eeAi~~~ekAL~l~p~~~~~~ 830 (954)
+|..+|++++|+.+|+++++++|++...+
T Consensus 230 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 258 (272)
T 3u4t_A 230 YYTINRDKVKADAAWKNILALDPTNKKAI 258 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCccHHHHH
Confidence 99999999999999999999977665543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-22 Score=219.16 Aligned_cols=282 Identities=11% Similarity=-0.004 Sum_probs=218.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
..++.+|.+++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++.+.|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------------- 86 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--------------- 86 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---------------
Confidence 56889999999999999999999999999999999999999999999999999999988877654
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~ 652 (954)
.+..++..+|.++...|++++|+..+++++...|.....
T Consensus 87 -----------------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 125 (327)
T 3cv0_A 87 -----------------------------------------KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 125 (327)
T ss_dssp -----------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC
T ss_pred -----------------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHH
Confidence 445566777888888888888888888888877765431
Q ss_pred hhhccCcchhhHHHHHHHHHH-HH-HHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 653 VLADNGSVTYSLARLWRWRLI-SK-SYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE 730 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l~a~~~L-g~-~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~ 730 (954)
.......... ......+ +. ++...|++++|+.++++++...|.+. ..+..+|.+
T Consensus 126 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------------~~~~~la~~ 181 (327)
T 3cv0_A 126 GSVNLQADVD----IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA--------------------QLHASLGVL 181 (327)
T ss_dssp ------------------------CCTTSHHHHHHHHHHHHHHHHHSTTCH--------------------HHHHHHHHH
T ss_pred HHHHhHHHHH----HHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCH--------------------HHHHHHHHH
Confidence 1110000000 0001122 44 58889999999999999999988653 256678999
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 002199 731 AFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYT 810 (954)
Q Consensus 731 ~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~e 810 (954)
+...|++++|+.+|++++.+. |....++..+|.++...|++++|+..|++++.++|.+..+++.+|.+|..+|+++
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELR----PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 999999999999999999998 7778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhhh
Q 002199 811 QAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEED 859 (954)
Q Consensus 811 eAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~a 859 (954)
+|+..|++++++.|....... ..........+..++.++..++..+.+
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTG-EASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC------CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCccccccc-cchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999776311100 000000334455666666665555443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=211.11 Aligned_cols=200 Identities=17% Similarity=0.145 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
|..+..+..+|..++..|++++|+..|+++|+.+|++. .+++++|.++..+|++++|+..|+++++++|+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----------~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 71 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDP----------EALYWLARTQLKLGLVNPALENGKTLVARTPR 71 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 55667899999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 002199 525 FLKVYMRAAKCHLVL-----------GEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQK 593 (954)
Q Consensus 525 ~~~a~~~LA~iy~~l-----------G~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g 593 (954)
+..+++.+|.++..+ |++++|+..|+++++++|++ ...++.++..+...|
T Consensus 72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-------------------~~~~~~lg~~~~~~g 132 (217)
T 2pl2_A 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-------------------APLHLQRGLVYALLG 132 (217)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc-------------------HHHHHHHHHHHHHcC
Confidence 999999999999999 99999999999999999986 456788999999999
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHH
Q 002199 594 TSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLI 673 (954)
Q Consensus 594 ~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~L 673 (954)
+++ +|+..|++++.++ .++.++..+|.+|..+|++++|+..|++++++.|.+.. ++..+
T Consensus 133 ~~~---~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~-----------------~~~~l 191 (217)
T 2pl2_A 133 ERD---KAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD-----------------LRVRY 191 (217)
T ss_dssp CHH---HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH-----------------HHHHH
T ss_pred ChH---HHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-----------------HHHHH
Confidence 999 8999999999999 99999999999999999999999999999999998754 67889
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 002199 674 SKSYFCIGKLEVALDLLQKLE 694 (954)
Q Consensus 674 g~~y~~lG~~eeAl~~l~kal 694 (954)
|.++..+|++++|+..|+++-
T Consensus 192 a~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 192 ASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTC---------------
T ss_pred HHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999998874
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-21 Score=214.63 Aligned_cols=258 Identities=10% Similarity=0.073 Sum_probs=165.8
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHH
Q 002199 503 ISLGRMREALEDCMMAATVDPNF-LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTE 581 (954)
Q Consensus 503 ~~lg~~eeAl~~~~kALel~P~~-~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~ 581 (954)
+..|+|..|+..++++...+|++ ..+.+.++++|+.+|++++|+..++.. +|.. +..
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~-------------------~~a 67 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPE-------------------LQA 67 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHH-------------------HHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChh-------------------HHH
Confidence 34455555555555544444444 234444455555555555555444331 1111 122
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCc
Q 002199 582 YINCSGKLLEQKTSEAASSALERINEALSI--SSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGS 659 (954)
Q Consensus 582 ~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~--~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~ 659 (954)
+..++..+...++++ +|+..+++++.. +|.++.+++.+|.++...|++++|+..|++ |.+..
T Consensus 68 ~~~la~~~~~~~~~~---~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~-------- 131 (291)
T 3mkr_A 68 VRMFAEYLASHSRRD---AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLE-------- 131 (291)
T ss_dssp HHHHHHHHHCSTTHH---HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHH--------
T ss_pred HHHHHHHHcCCCcHH---HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHH--------
Confidence 223333333344444 445555555443 477777888888888888888888888877 33322
Q ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 002199 660 VTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTE 739 (954)
Q Consensus 660 ~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~ee 739 (954)
++..+|.+|..+|++++|+..|++++..+|+..... .... ....+...|++++
T Consensus 132 ---------~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~---------------l~~a---~~~l~~~~~~~~e 184 (291)
T 3mkr_A 132 ---------CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQ---------------LATA---WVSLAAGGEKLQD 184 (291)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH---------------HHHH---HHHHHHCTTHHHH
T ss_pred ---------HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHH---------------HHHH---HHHHHhCchHHHH
Confidence 566778888888888888888888888877652100 0001 1122334578888
Q ss_pred HHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHH-HHHHHHH
Q 002199 740 AVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQ-AASDLQR 818 (954)
Q Consensus 740 Ai~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~ee-Ai~~~ek 818 (954)
|+..|++++... |.++.+++++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++.+ |..++++
T Consensus 185 A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 185 AYYIFQEMADKC----SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQ 260 (291)
T ss_dssp HHHHHHHHHHHS----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 888888888887 66778888888888888888888888888888888888888888888888888865 4577788
Q ss_pred HHHHhhhhHHH
Q 002199 819 LVSILENQSAE 829 (954)
Q Consensus 819 AL~l~p~~~~~ 829 (954)
++++.|++...
T Consensus 261 ~~~~~P~~~~~ 271 (291)
T 3mkr_A 261 LKDAHRSHPFI 271 (291)
T ss_dssp HHHHCTTCHHH
T ss_pred HHHhCCCChHH
Confidence 88888877653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-21 Score=211.77 Aligned_cols=250 Identities=12% Similarity=0.015 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--chhhhhhHHHHHHH
Q 002199 492 VLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS--AAAVCLDRRITIEA 569 (954)
Q Consensus 492 a~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l--~P~~~~~~~~~~ea 569 (954)
......++.+|+.+|+++.|+..++. .+|....++..++..+...+++++|++.|++++.. +|++
T Consensus 34 ~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~---------- 100 (291)
T 3mkr_A 34 VERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTN---------- 100 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSC----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCC----------
Confidence 45777889999999999999998866 26667889999999999999999999999999876 4765
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 570 ADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 570 ~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
...++.++..+...|+++ +|+..+.+ |.++.++..+|.+|..+|++++|+..|+++++..|++
T Consensus 101 ---------~~~~~~la~~~~~~g~~~---~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 163 (291)
T 3mkr_A 101 ---------TTFLLMAASIYFYDQNPD---AALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDA 163 (291)
T ss_dssp ---------HHHHHHHHHHHHHTTCHH---HHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ---------HHHHHHHHHHHHHCCCHH---HHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCc
Confidence 456889999999999999 67776666 8999999999999999999999999999999998865
Q ss_pred hhhhhhccCcchhhHHHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002199 650 FASVLADNGSVTYSLARLWRWRLIS--KSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSA 727 (954)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~a~~~Lg--~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~l 727 (954)
.. ..+..+ .++...|++++|+.+|++++...|.+. ..+..+
T Consensus 164 ~~-----------------~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~--------------------~~~~~l 206 (291)
T 3mkr_A 164 TL-----------------TQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTL--------------------LLLNGQ 206 (291)
T ss_dssp HH-----------------HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCH--------------------HHHHHH
T ss_pred HH-----------------HHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcH--------------------HHHHHH
Confidence 21 111122 333355899999999999999988763 378999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 002199 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIAD-AIADCSLAMALDENYTKAVSRRAALHEMI 806 (954)
Q Consensus 728 G~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~ee-Ai~~~ekAL~ldP~~~~al~~lA~ly~~l 806 (954)
|.++...|++++|+..|++++.++ |.++.++.++|.++..+|++.+ +..+++++++++|+++.+. .+..+.
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~----p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~ 278 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKD----SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKE 278 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHH
Confidence 999999999999999999999999 8889999999999999999976 5689999999999998765 456667
Q ss_pred cCHHHHHHHH
Q 002199 807 RDYTQAASDL 816 (954)
Q Consensus 807 g~~eeAi~~~ 816 (954)
+.+++|+..|
T Consensus 279 ~~fd~~~~~~ 288 (291)
T 3mkr_A 279 NDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 7777776655
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=8.3e-22 Score=210.49 Aligned_cols=255 Identities=13% Similarity=-0.031 Sum_probs=206.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 002199 458 AYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHL 537 (954)
Q Consensus 458 ~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~ 537 (954)
+...|+|++|+..|+++++..+.+. ...+.+++.+|.++..+|++++|+..|+++++++|.+..++..+|.+|.
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTD------DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT 88 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHhcccccC------chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 3445889999999999999854321 1235899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHH
Q 002199 538 VLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEK 617 (954)
Q Consensus 538 ~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~ 617 (954)
.+|++++|+.+|++++.++| .++.
T Consensus 89 ~~~~~~~A~~~~~~al~~~~--------------------------------------------------------~~~~ 112 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELDP--------------------------------------------------------TYNY 112 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCT--------------------------------------------------------TCTH
T ss_pred HccCHHHHHHHHHHHHhcCc--------------------------------------------------------cccH
Confidence 99999999999988877655 3456
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002199 618 LLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVG 697 (954)
Q Consensus 618 ~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~ 697 (954)
++..+|.+|..+|++++|+..|++++++.|.+.. .+..+ .++...|++++|+..+++++...
T Consensus 113 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----------------~~~~~-~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 113 AHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF-----------------RSLWL-YLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHH-HHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH-----------------HHHHH-HHHHHhcCHHHHHHHHHHHHhcC
Confidence 7788888999999999999999999988887632 12222 23466789999999999998887
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHH
Q 002199 698 SISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIAD 777 (954)
Q Consensus 698 p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~ee 777 (954)
|.... ...++..+...+++++|+..+.+++...+...+....++..+|.+|..+|++++
T Consensus 175 ~~~~~---------------------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 233 (275)
T 1xnf_A 175 DKEQW---------------------GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 233 (275)
T ss_dssp CCCST---------------------HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CcchH---------------------HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHH
Confidence 76643 123566777888899999999999888754445668899999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 002199 778 AIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDL 816 (954)
Q Consensus 778 Ai~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ 816 (954)
|+..|++++.++|.+... .+.++..+|++++|+..|
T Consensus 234 A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 234 ATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 999999999999977543 477889999999999887
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-19 Score=210.94 Aligned_cols=308 Identities=11% Similarity=-0.019 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 002199 446 ETCEMWRLRGNQAYK----NNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRIS----LGRMREALEDCMM 517 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~----~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~----lg~~eeAl~~~~k 517 (954)
..+++++.+|..|+. .+++++|+.+|+++++. .+. .+++.+|.+|.. .+++++|+..|++
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~----------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 104 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYT----------PAEYVLGLRYMNGEGVPQDYAQAVIWYKK 104 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH----------HHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCH----------HHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 356788889999888 89999999999999886 333 788999999998 8999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--
Q 002199 518 AATVDPNFLKVYMRAAKCHLV----LGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLE-- 591 (954)
Q Consensus 518 ALel~P~~~~a~~~LA~iy~~----lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~-- 591 (954)
+++. .++.+++.||.+|.. .+++++|+.+|++++.... ...++.++..+..
T Consensus 105 a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---------------------~~a~~~Lg~~y~~g~ 161 (490)
T 2xm6_A 105 AALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGR---------------------DSGQQSMGDAYFEGD 161 (490)
T ss_dssp HHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---------------------HHHHHHHHHHHHHTS
T ss_pred HHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---------------------HHHHHHHHHHHHcCC
Confidence 8875 578889999999988 8899999999999877532 2334455555554
Q ss_pred --hcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHH
Q 002199 592 --QKTSEAASSALERINEALSISSCSEKLLEMKADALYM----LRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLA 665 (954)
Q Consensus 592 --~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~----lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~ 665 (954)
.++++ +|+..|++++.. .++.++..+|.+|.. .+++++|+.+|+++++.....
T Consensus 162 g~~~d~~---~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~---------------- 220 (490)
T 2xm6_A 162 GVTRDYV---MAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDEL---------------- 220 (490)
T ss_dssp SSCCCHH---HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH----------------
T ss_pred CCCCCHH---HHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHH----------------
Confidence 34444 566666666554 356666666666666 666666666666665543211
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCcchhhHHH-------------HHHHHHHH---HHHHHHHHH
Q 002199 666 RLWRWRLISKSYFC----IGKLEVALDLLQKLEQVGSISDRYGSEIL-------------ESSMSLAG---TVRALLHHK 725 (954)
Q Consensus 666 ~l~a~~~Lg~~y~~----lG~~eeAl~~l~kal~l~p~~~~~~~~~l-------------~~~~~l~~---~~~~~~~~~ 725 (954)
+++.+|.+|.. .+++++|+.+|++++...+ ......+- .....+.. ......++.
T Consensus 221 ---a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~ 295 (490)
T 2xm6_A 221 ---GQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN--SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQY 295 (490)
T ss_dssp ---HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHH
T ss_pred ---HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 44555666654 5566666666666554321 00000000 00000000 000123455
Q ss_pred HHHHHHHHc-----CCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCCHHHHH
Q 002199 726 SAGNEAFKS-----GRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALG---QIADAIADCSLAMALDENYTKAVS 797 (954)
Q Consensus 726 ~lG~~~~~~-----g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg---~~eeAi~~~ekAL~ldP~~~~al~ 797 (954)
.+|.+|... +++++|+.+|+++++.. .+.+++++|.+|...| ++++|+.+|+++++. .++.+++
T Consensus 296 ~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 367 (490)
T 2xm6_A 296 YLAHLYDKGAEGVAKNREQAISWYTKSAEQG------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQF 367 (490)
T ss_dssp HHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHH
Confidence 566666665 66666666666666543 3455666666666644 566666666666665 4566666
Q ss_pred HHHHHHHH----hcCHHHHHHHHHHHHHH
Q 002199 798 RRAALHEM----IRDYTQAASDLQRLVSI 822 (954)
Q Consensus 798 ~lA~ly~~----lg~~eeAi~~~ekAL~l 822 (954)
.+|.+|.. .+++++|+.+|+++++.
T Consensus 368 ~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 368 NLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 66666666 66666666666666654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-19 Score=211.64 Aligned_cols=310 Identities=12% Similarity=0.004 Sum_probs=229.3
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 002199 447 TCEMWRLRGNQAYK----NNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRIS----LGRMREALEDCMMA 518 (954)
Q Consensus 447 ~ae~l~~~G~~~~~----~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~----lg~~eeAl~~~~kA 518 (954)
.+.+++.+|..|+. .+++++|+.+|+++++.. +. .+++++|.+|.. .+++++|+..|+++
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~----------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 141 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LP----------QAQQNLGVMYHEGNGVKVDKAESVKWFRLA 141 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH----------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CH----------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 46789999999999 999999999999998863 43 789999999999 89999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhchhhhhh------------HHHHHHHHHHHHHHH---hH
Q 002199 519 ATVDPNFLKVYMRAAKCHLV----LGEIENAQHYYHKLLNSAAAVCLD------------RRITIEAADGLQKAQ---KV 579 (954)
Q Consensus 519 Lel~P~~~~a~~~LA~iy~~----lG~~eeAl~~yekaL~l~P~~~~~------------~~~~~ea~~~l~~~~---~~ 579 (954)
++. .++.+++.+|.+|.. .+++++|+.+|+++++........ .....++...+.++. ..
T Consensus 142 ~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~ 219 (490)
T 2xm6_A 142 AEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDE 219 (490)
T ss_dssp HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 876 578999999999998 889999999999998863211000 001111111111111 12
Q ss_pred HHHHHHHHHHHH----hcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHhchhhhhhhh
Q 002199 580 TEYINCSGKLLE----QKTSEAASSALERINEALSISSCSEKLLEMKADALYM----LRKYEEAIQLCEHTLPVAEKNFA 651 (954)
Q Consensus 580 ~~~l~~a~~ll~----~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~----lg~~eeAi~~~ekaL~l~p~~~~ 651 (954)
..++.++..+.. .++++ +|+..|.+++.. .++.+++.+|.+|.. .+++++|+.+|+++++.....
T Consensus 220 ~a~~~lg~~y~~g~g~~~~~~---~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~-- 292 (490)
T 2xm6_A 220 LGQLHLADMYYFGIGVTQDYT---QSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSD-- 292 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHH---HHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHH--
T ss_pred HHHHHHHHHHHcCCCCCCCHH---HHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHH--
Confidence 334444444443 34444 566666666543 345566666666666 666666666666665543211
Q ss_pred hhhhccCcchhhHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002199 652 SVLADNGSVTYSLARLWRWRLISKSYFCI-----GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKS 726 (954)
Q Consensus 652 ~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l-----G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 726 (954)
+++.+|.+|... +++++|+.+|+++++..+ ..++..
T Consensus 293 -----------------a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~----------------------~~a~~~ 333 (490)
T 2xm6_A 293 -----------------GQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD----------------------ATAQAN 333 (490)
T ss_dssp -----------------HHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC----------------------HHHHHH
T ss_pred -----------------HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC----------------------HHHHHH
Confidence 455666666666 677777777777665421 245677
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002199 727 AGNEAFKSG---RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA----LGQIADAIADCSLAMALDENYTKAVSRR 799 (954)
Q Consensus 727 lG~~~~~~g---~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~----lg~~eeAi~~~ekAL~ldP~~~~al~~l 799 (954)
+|.+|...| ++++|+.+|++++... ++.+++++|.+|.. .+++++|+.+|+++++. .++.+++.+
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L 405 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQL 405 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 899998866 8999999999999864 57899999999999 89999999999999986 469999999
Q ss_pred HHHHHH----hcCHHHHHHHHHHHHHHhh
Q 002199 800 AALHEM----IRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 800 A~ly~~----lg~~eeAi~~~ekAL~l~p 824 (954)
|.+|.. .+++++|+.+|++++++.|
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 999999 8999999999999999973
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-21 Score=202.81 Aligned_cols=196 Identities=16% Similarity=0.128 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
.+++.+|.+++..|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------------- 72 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY------------- 72 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------------
Confidence 8999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHhHHHHHHHHHHHHHh-----------cChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 002199 573 LQKAQKVTEYINCSGKLLEQ-----------KTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEH 641 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~-----------g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ek 641 (954)
...++.++..+... |+++ +|+..|++++.++|.++.++..+|.++..+|++++|+..|++
T Consensus 73 ------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~---~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 143 (217)
T 2pl2_A 73 ------LGGYMVLSEAYVALYRQAEDRERGKGYLE---QALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143 (217)
T ss_dssp ------HHHHHHHHHHHHHHHHTCSSHHHHHHHHH---HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHhhhhhhhhcccccCHH---HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 44566777777777 8888 899999999999999999999999999999999999999999
Q ss_pred hchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHH
Q 002199 642 TLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRAL 721 (954)
Q Consensus 642 aL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~ 721 (954)
+++++ .+.. +++.+|.+|..+|++++|+..|+++++++|.+..
T Consensus 144 al~~~-~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~------------------- 186 (217)
T 2pl2_A 144 ALALE-DTPE-----------------IRSALAELYLSMGRLDEALAQYAKALEQAPKDLD------------------- 186 (217)
T ss_dssp HHHHC-CCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH-------------------
T ss_pred HHhcc-cchH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-------------------
Confidence 99998 5533 6789999999999999999999999999998754
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 722 LHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 722 ~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
.+..+|.++...|++++|+..|+++-
T Consensus 187 -~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 187 -LRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp -HHHHHHHHHTC---------------
T ss_pred -HHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 56678999999999999999998864
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-20 Score=220.41 Aligned_cols=185 Identities=11% Similarity=0.015 Sum_probs=161.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------ccCHH-------HHHHHHHHhch-hhhhhhhhhhhccCcchhhH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYM-------LRKYE-------EAIQLCEHTLP-VAEKNFASVLADNGSVTYSL 664 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~-------lg~~e-------eAi~~~ekaL~-l~p~~~~~~~~~~~~~~~~~ 664 (954)
.++..|++++...|.++.+|+.+|.++.. .|+++ +|+..|++++. +.|++..
T Consensus 256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~------------- 322 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML------------- 322 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH-------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH-------------
Confidence 67789999999999999999999999987 79987 99999999997 7887644
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 665 ARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHY 744 (954)
Q Consensus 665 ~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y 744 (954)
.|..++.++...|++++|...|++++.+.|.+.. ..|...|..+.+.|++++|+..|
T Consensus 323 ----l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------------------~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 323 ----LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT-------------------LVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH-------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch-------------------HHHHHHHHHHHHhcCHHHHHHHH
Confidence 6888999999999999999999999998776521 25667788888899999999999
Q ss_pred HHHHhhccCCchhhHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 745 TVALSTNIESRPFAAICFCNRAAA-LQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 745 ~kAL~l~~~~~p~~a~~~~~lA~~-y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
++|+... |....++...+.+ +...|++++|+..|+++++..|+++.+|..++.++..+|++++|...|++++...
T Consensus 380 ~~Al~~~----~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 380 KKAREDA----RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHTCT----TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHhcc----CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 9999986 4445555555544 4468999999999999999999999999999999999999999999999999884
Q ss_pred h
Q 002199 824 E 824 (954)
Q Consensus 824 p 824 (954)
|
T Consensus 456 ~ 456 (530)
T 2ooe_A 456 S 456 (530)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-20 Score=201.54 Aligned_cols=259 Identities=17% Similarity=0.193 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNF----LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE 568 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~----~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~e 568 (954)
..+...|.+++..|++++|+..|++++++.|.+ ..++..+|.++...|++++|+.+|++++.+.+..
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------- 76 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--------- 76 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---------
Confidence 567889999999999999999999999999998 4788899999999999999999999998753210
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhh
Q 002199 569 AADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEK 648 (954)
Q Consensus 569 a~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~ 648 (954)
...|....++..+|.++..+|++++|+..+++++.+.+.
T Consensus 77 -----------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 115 (338)
T 3ro2_A 77 -----------------------------------------GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE 115 (338)
T ss_dssp -----------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 001122456788999999999999999999999998875
Q ss_pred hhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhhCCCCcchhhHHH
Q 002199 649 NFASVLADNGSVTYSLARLWRWRLISKSYFCIGK--------------------LEVALDLLQKLEQVGSISDRYGSEIL 708 (954)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~--------------------~eeAl~~l~kal~l~p~~~~~~~~~l 708 (954)
... ......++..+|.+|...|+ +++|+.++++++.+.+.
T Consensus 116 ~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~--------- 175 (338)
T 3ro2_A 116 LND-----------KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA--------- 175 (338)
T ss_dssp TTC-----------HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred hcC-----------chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh---------
Confidence 422 12234478899999999999 99999999888765221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC--CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002199 709 ESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIE--SRPFAAICFCNRAAALQALGQIADAIADCSLAM 786 (954)
Q Consensus 709 ~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~--~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL 786 (954)
..........+..+|.++...|++++|+.+|++++.+.+. ..+....++.++|.++..+|++++|+.++++++
T Consensus 176 -----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 176 -----LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp -----HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -----cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1112334557788999999999999999999999988642 234556699999999999999999999999999
Q ss_pred HhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 787 ALDENY------TKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 787 ~ldP~~------~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.+.+.. ..++..+|.++..+|++++|+.+|++++++.+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 887655 7889999999999999999999999999997654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-19 Score=195.81 Aligned_cols=99 Identities=14% Similarity=0.098 Sum_probs=64.3
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHH
Q 002199 725 KSAGNEAFK----SGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA----LGQIADAIADCSLAMALDENYTKAV 796 (954)
Q Consensus 725 ~~lG~~~~~----~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~----lg~~eeAi~~~ekAL~ldP~~~~al 796 (954)
..+|.++.. .+++++|+.+|++++... .+.+++++|.+|.. .+++++|+.+|++++++.| +.++
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~ 221 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGC 221 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHH
Confidence 345555555 566666666666666543 24566667777777 6777777777777776654 6667
Q ss_pred HHHHHHHHH----hcCHHHHHHHHHHHHHHhhhhHHHHH
Q 002199 797 SRRAALHEM----IRDYTQAASDLQRLVSILENQSAEKA 831 (954)
Q Consensus 797 ~~lA~ly~~----lg~~eeAi~~~ekAL~l~p~~~~~~~ 831 (954)
+.+|.+|.. .+++++|+.+|++++++.|.+.....
T Consensus 222 ~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 260 (273)
T 1ouv_A 222 FNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDIL 260 (273)
T ss_dssp HHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777776 77777777777777777666655543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=212.90 Aligned_cols=261 Identities=18% Similarity=0.184 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHH
Q 002199 491 LVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL----KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRIT 566 (954)
Q Consensus 491 la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~----~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~ 566 (954)
.+..+..+|.+++..|++++|+..|++++++.|++. .++..+|.+|..+|++++|+.+|++++.+....
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------- 119 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM------- 119 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-------
Confidence 357788999999999999999999999999999986 589999999999999999999999998752210
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhh
Q 002199 567 IEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVA 646 (954)
Q Consensus 567 ~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~ 646 (954)
...|....++..+|.+|..+|++++|+.+|++++.+.
T Consensus 120 -------------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 156 (411)
T 4a1s_A 120 -------------------------------------------NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA 156 (411)
T ss_dssp -------------------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 0112234678889999999999999999999999986
Q ss_pred hhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhhCCCCcchhhHHHH
Q 002199 647 EKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGK-----------------LEVALDLLQKLEQVGSISDRYGSEILE 709 (954)
Q Consensus 647 p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~-----------------~eeAl~~l~kal~l~p~~~~~~~~~l~ 709 (954)
+.... ......++..+|.+|...|+ +++|+.++++++.+.+..
T Consensus 157 ~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--------- 216 (411)
T 4a1s_A 157 RQLGD-----------RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL--------- 216 (411)
T ss_dssp HHHTC-----------HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHhhc-----------hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc---------
Confidence 54311 11223478899999999999 999999999887653211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC--CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 710 SSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIE--SRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787 (954)
Q Consensus 710 ~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~--~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ 787 (954)
.........+..+|.+++..|++++|+.+|++++.+.+. .......++.++|.+|..+|++++|+.+|++++.
T Consensus 217 -----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 217 -----GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 112334567888999999999999999999999998742 2234456999999999999999999999999999
Q ss_pred hCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 788 LDENY------TKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 788 ldP~~------~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
+.+.. ..++..+|.+|..+|++++|+.+|++++++.+..
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 87754 7889999999999999999999999999997754
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-19 Score=193.75 Aligned_cols=230 Identities=12% Similarity=0.041 Sum_probs=206.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhchhhhhhHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLV----LGEIENAQHYYHKLLNSAAAVCLDRRITIE 568 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~----lG~~eeAl~~yekaL~l~P~~~~~~~~~~e 568 (954)
.+++.+|.+|...|++++|+..|+++++ |.++.+++.+|.+|.. .+++++|+.+|++++++..
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~----------- 73 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY----------- 73 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCC-----------
Confidence 8999999999999999999999999999 7889999999999999 9999999999999998742
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH----hcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHH
Q 002199 569 AADGLQKAQKVTEYINCSGKLLE----QKTSEAASSALERINEALSISSCSEKLLEMKADALYM----LRKYEEAIQLCE 640 (954)
Q Consensus 569 a~~~l~~~~~~~~~l~~a~~ll~----~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~----lg~~eeAi~~~e 640 (954)
...++.++..+.. .++++ +|+..|++++... ++.++..+|.+|.. .+++++|+.+|+
T Consensus 74 ----------~~a~~~lg~~~~~g~~~~~~~~---~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~ 138 (273)
T 1ouv_A 74 ----------SNGCHLLGNLYYSGQGVSQNTN---KALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFT 138 (273)
T ss_dssp ----------HHHHHHHHHHHHHTSSSCCCHH---HHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHhCCCCcccCHH---HHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 4557788888888 88888 8999999999874 89999999999999 999999999999
Q ss_pred HhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHH
Q 002199 641 HTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFC----IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAG 716 (954)
Q Consensus 641 kaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~----lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~ 716 (954)
++++..+.. +++.+|.+|.. .+++++|+.+|+++++..+
T Consensus 139 ~a~~~~~~~-------------------a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~------------------ 181 (273)
T 1ouv_A 139 KACDLNDGD-------------------GCTILGSLYDAGRGTPKDLKKALASYDKACDLKD------------------ 181 (273)
T ss_dssp HHHHTTCHH-------------------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC------------------
T ss_pred HHHhcCcHH-------------------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC------------------
Confidence 999876422 67889999999 9999999999999987632
Q ss_pred HHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHh
Q 002199 717 TVRALLHHKSAGNEAFK----SGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA----LGQIADAIADCSLAMAL 788 (954)
Q Consensus 717 ~~~~~~~~~~lG~~~~~----~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~----lg~~eeAi~~~ekAL~l 788 (954)
...+..+|.+|.. .+++++|+.+|++++... + ..+++++|.+|.. .+++++|+.+|++++++
T Consensus 182 ----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 182 ----SPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----N--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp ----HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----C--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC----C--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 2467889999999 999999999999999986 3 6789999999999 99999999999999999
Q ss_pred CCCCHHHHH
Q 002199 789 DENYTKAVS 797 (954)
Q Consensus 789 dP~~~~al~ 797 (954)
.|..+..++
T Consensus 252 ~~~~a~~~l 260 (273)
T 1ouv_A 252 GAKGACDIL 260 (273)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 987655443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=238.35 Aligned_cols=272 Identities=16% Similarity=0.048 Sum_probs=207.4
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHH
Q 002199 520 TVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAAS 599 (954)
Q Consensus 520 el~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~ 599 (954)
.++|+++.+++.+| ...|++++|++.|++++...
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~------------------------------------------- 421 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGA------------------------------------------- 421 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC--------------------------------------------
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhc-------------------------------------------
Confidence 45777777777666 67788888888887776320
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFC 679 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~ 679 (954)
+......+|.+..+++.+|.+|+.+|++++|+..|+++++++|++.. +|+.+|.+|..
T Consensus 422 -----~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------a~~~lg~~~~~ 479 (681)
T 2pzi_A 422 -----LDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR-----------------LVWYRAVAELL 479 (681)
T ss_dssp -----------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH-----------------HHHHHHHHHHH
T ss_pred -----ccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH-----------------HHHHHHHHHHH
Confidence 11223567888899999999999999999999999999999998855 78899999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhH
Q 002199 680 IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAA 759 (954)
Q Consensus 680 lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a 759 (954)
+|++++|+..|+++++++|.+.. .+.++|.++...|++++ +.+|++|++++ |.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~--------------------~~~~lg~~~~~~g~~~~-~~~~~~al~~~----P~~~ 534 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELA--------------------PKLALAATAELAGNTDE-HKFYQTVWSTN----DGVI 534 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSH--------------------HHHHHHHHHHHHTCCCT-TCHHHHHHHHC----TTCH
T ss_pred cCCHHHHHHHHHHHHHhCCCChH--------------------HHHHHHHHHHHcCChHH-HHHHHHHHHhC----CchH
Confidence 99999999999999999998855 56779999999999999 99999999999 7888
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHhhhhHHHHHhhcCCCC
Q 002199 760 ICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQA-ASDLQRLVSILENQSAEKAKQSRSPG 838 (954)
Q Consensus 760 ~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeA-i~~~ekAL~l~p~~~~~~~~~~~~P~ 838 (954)
.+|+++|.+|..+|++++|+.+|+++++++|++..+++++|.++...++.++| ...++++++..+.... ..|.
T Consensus 535 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~------~~~~ 608 (681)
T 2pzi_A 535 SAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPP------TEPR 608 (681)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCT------TSTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCC------CcHH
Confidence 99999999999999999999999999999999999999999999888876655 6667766666443210 0122
Q ss_pred cchhhhhhHHHHHhhhhhhhhhccCCCcchhhhhccccCCCH--HHHHHHHHHHHHhhCCC
Q 002199 839 RTISSRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTA--ADIKKAYRKAALKHHPD 897 (954)
Q Consensus 839 ~~~~~~~L~~a~~~L~~~e~a~k~~~~~dyYkiLgv~~~a~~--~eIkkAYrklAl~~HPD 897 (954)
.......+..+. + ........+||++||++..... .+|+++||++|..-+++
T Consensus 609 ~~~l~~~ll~~~--l-----~~~~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~ 662 (681)
T 2pzi_A 609 VLQIRALVLGGA--L-----DWLKDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ 662 (681)
T ss_dssp HHHHHHHHHHHH--H-----HHHTSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHH--H-----HHHHccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh
Confidence 211111111111 1 1123345569999999766655 67999999999966655
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-20 Score=185.99 Aligned_cols=175 Identities=15% Similarity=0.161 Sum_probs=162.8
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 614 CSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKL 693 (954)
Q Consensus 614 ~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~ka 693 (954)
+++.+|+.+|.+|..+|++++|+..|+++++++|++.. +|..+|.+|..+|++++|+..+.++
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~~~~~~a~~~~~~~ 65 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVE-----------------TLLKLGKTYMDIGLPNDAIESLKKF 65 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999998855 7889999999999999999999999
Q ss_pred HhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhc
Q 002199 694 EQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALG 773 (954)
Q Consensus 694 l~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg 773 (954)
+...|.... .+..+|..+...++++.|+..+.+++.+. |....++..+|.+|..+|
T Consensus 66 ~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~a~~~~~~a~~~~----~~~~~~~~~lg~~~~~~g 121 (184)
T 3vtx_A 66 VVLDTTSAE--------------------AYYILGSANFMIDEKQAAIDALQRAIALN----TVYADAYYKLGLVYDSMG 121 (184)
T ss_dssp HHHCCCCHH--------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTT
T ss_pred HhcCchhHH--------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC----ccchHHHHHHHHHHHHhC
Confidence 999887744 45668999999999999999999999999 778899999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHH
Q 002199 774 QIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAE 829 (954)
Q Consensus 774 ~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~ 829 (954)
++++|+..|+++++++|.++.+++.+|.+|..+|++++|+.+|+++++++|++..+
T Consensus 122 ~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~~ 177 (184)
T 3vtx_A 122 EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAKY 177 (184)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHHH
T ss_pred CchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHHH
Confidence 99999999999999999999999999999999999999999999999999886543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-20 Score=196.14 Aligned_cols=220 Identities=15% Similarity=0.154 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHH
Q 002199 491 LVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAA 570 (954)
Q Consensus 491 la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~ 570 (954)
.+..|+.+|.+++..|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..|++++.+.|
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------------- 88 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS------------- 88 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------------
Confidence 3688999999999999999999999999999999999999999999999999999999988877544
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhh
Q 002199 571 DGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNF 650 (954)
Q Consensus 571 ~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~ 650 (954)
....++..+|.++..+|++++|+..++++++..|.+.
T Consensus 89 -------------------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 125 (243)
T 2q7f_A 89 -------------------------------------------SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG 125 (243)
T ss_dssp -------------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSH
T ss_pred -------------------------------------------cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 4455677788888888888888888888888877653
Q ss_pred hhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 651 ASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE 730 (954)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~ 730 (954)
. .+..+|.+|...|++++|+.++++++.+.|.+.. .+..+|.+
T Consensus 126 ~-----------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------------~~~~l~~~ 168 (243)
T 2q7f_A 126 D-----------------LFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE--------------------ARFQFGMC 168 (243)
T ss_dssp H-----------------HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH--------------------HHHHHHHH
T ss_pred H-----------------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH--------------------HHHHHHHH
Confidence 3 5677888888888888888888888887775532 45567888
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 002199 731 AFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIR 807 (954)
Q Consensus 731 ~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg 807 (954)
+...|++++|+.+|++++... |....++..+|.+|..+|++++|+..|+++++++|++..++..++.+....+
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQD----PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHcCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 888888888888888888887 6667788889999999999999999999999999999888888877665544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.2e-20 Score=193.37 Aligned_cols=209 Identities=14% Similarity=0.081 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
.-.+..|+.+|..++..|+|++|+.+|+++++..|.+. .++..+|.++...|++++|+..|+++++++|.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~----------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 89 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA----------IPYINFANLLSSVNELERALAFYDKALELDSS 89 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 34567899999999999999999999999999999986 89999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHH
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALER 604 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~ 604 (954)
+..++..+|.++..+|++++|+..|++++++.|.+ ...+..++..++..|+++ +|+..
T Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------~~~~~~~a~~~~~~~~~~---~A~~~ 147 (243)
T 2q7f_A 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-------------------GDLFYMLGTVLVKLEQPK---LALPY 147 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS-------------------HHHHHHHHHHHHHTSCHH---HHHHH
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHhccHH---HHHHH
Confidence 99999999999999999999999999999998865 344677888899999999 89999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHH
Q 002199 605 INEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLE 684 (954)
Q Consensus 605 l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~e 684 (954)
+.+++...|.++.++..+|.++...|++++|+..+++++...|.+.. .+..+|.+|...|+++
T Consensus 148 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~la~~~~~~~~~~ 210 (243)
T 2q7f_A 148 LQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHAD-----------------AFYNAGVTYAYKENRE 210 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHTTCTT
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH-----------------HHHHHHHHHHHccCHH
Confidence 99999999999999999999999999999999999999999887643 6788999999999999
Q ss_pred HHHHHHHHHHhhCCCCcc
Q 002199 685 VALDLLQKLEQVGSISDR 702 (954)
Q Consensus 685 eAl~~l~kal~l~p~~~~ 702 (954)
+|+.+|++++.+.|.+..
T Consensus 211 ~A~~~~~~~~~~~p~~~~ 228 (243)
T 2q7f_A 211 KALEMLDKAIDIQPDHML 228 (243)
T ss_dssp HHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHccCcchHH
Confidence 999999999999998755
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.84 E-value=9.8e-20 Score=183.69 Aligned_cols=172 Identities=15% Similarity=0.144 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF 525 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~ 525 (954)
+.+..|..+|..++.+|+|++|+.+|+++|+++|++. .+|..+|.+|..+|++++|+..+.+++...|+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~ 72 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV----------ETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS 72 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh
Confidence 4567899999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 002199 526 LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERI 605 (954)
Q Consensus 526 ~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l 605 (954)
..++..+|.++...++++.|+..+.+++.+.|.+ ...+..++..+...|+++ +|+..|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-------------------~~~~~~lg~~~~~~g~~~---~A~~~~ 130 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTVY-------------------ADAYYKLGLVYDSMGEHD---KAIEAY 130 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHTTCHH---HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------------------hHHHHHHHHHHHHhCCch---hHHHHH
Confidence 9999999999999999999999999999999976 455778899999999999 899999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 606 NEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 606 ~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
++++.++|.++.++..+|.+|..+|++++|+..|+++|+++|++
T Consensus 131 ~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 131 EKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 99999999999999999999999999999999999999999976
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-19 Score=201.52 Aligned_cols=332 Identities=11% Similarity=-0.004 Sum_probs=244.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHH--HHHHHHcCCHHHHH----------
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNR--AATRISLGRMREAL---------- 512 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~l--A~~y~~lg~~eeAl---------- 512 (954)
++...........+...+++++|+.+++++.+..+... .......|+.+ ....+.++.+..+.
T Consensus 9 ~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~-----~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~ 83 (383)
T 3ulq_A 9 SSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQME-----EDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRL 83 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHHHHhhcCcccccccccccch
Confidence 44556666777788999999999999999877654421 01112233332 22233344444444
Q ss_pred -HHHHHHHhcCCCcHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 002199 513 -EDCMMAATVDPNFLK------VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINC 585 (954)
Q Consensus 513 -~~~~kALel~P~~~~------a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~ 585 (954)
..+++ ++..|.... .++.+|.++...|++++|+.+|++++.+...... .......+..+
T Consensus 84 ~~~~~~-i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~~~a~~~~~l 149 (383)
T 3ulq_A 84 SDLLLE-IDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKD-------------RIEKAEFFFKM 149 (383)
T ss_dssp HHHHHH-HHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-------------HHHHHHHHHHH
T ss_pred hhHHHH-HHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCC-------------HHHHHHHHHHH
Confidence 44444 333333333 3445999999999999999999999997432210 01124567888
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccC
Q 002199 586 SGKLLEQKTSEAASSALERINEALSISS-------CSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNG 658 (954)
Q Consensus 586 a~~ll~~g~~~~a~eAL~~l~kaL~~~P-------~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~ 658 (954)
|..+...|+++ +|+..+.+++.+.+ ....++..+|.+|..+|++++|+..|++++++.+....
T Consensus 150 g~~~~~~~~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------- 219 (383)
T 3ulq_A 150 SESYYYMKQTY---FSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ------- 219 (383)
T ss_dssp HHHHHHTTCHH---HHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHcCCHH---HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC-------
Confidence 99999999999 78888888888743 23568899999999999999999999999999875521
Q ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 002199 659 SVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYT 738 (954)
Q Consensus 659 ~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~e 738 (954)
......++..+|.+|..+|++++|+.+|++++.+.+.... ......++..+|.++...|+++
T Consensus 220 ----~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~ 281 (383)
T 3ulq_A 220 ----PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI--------------LPSLPQAYFLITQIHYKLGKID 281 (383)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------GGGHHHHHHHHHHHHHHTTCHH
T ss_pred ----hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc--------------chhHHHHHHHHHHHHHHCCCHH
Confidence 1222347889999999999999999999999985321111 0122456788999999999999
Q ss_pred HHHHHHHHHHhhccC-CchhhHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 002199 739 EAVEHYTVALSTNIE-SRPFAAICFCNRAAALQALGQ---IADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAAS 814 (954)
Q Consensus 739 eAi~~y~kAL~l~~~-~~p~~a~~~~~lA~~y~~lg~---~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~ 814 (954)
+|+.+|++++.+.+. ..+.....+..+|.+|...|+ +.+|+..++++ ...|....++..+|.+|..+|++++|+.
T Consensus 282 ~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~ 360 (383)
T 3ulq_A 282 KAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASA 360 (383)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999998532 114444457789999999999 88888888876 3345567789999999999999999999
Q ss_pred HHHHHHHHhh
Q 002199 815 DLQRLVSILE 824 (954)
Q Consensus 815 ~~ekAL~l~p 824 (954)
+|++++++..
T Consensus 361 ~~~~al~~~~ 370 (383)
T 3ulq_A 361 YFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999999843
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.1e-19 Score=189.46 Aligned_cols=232 Identities=10% Similarity=-0.031 Sum_probs=194.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..|..+..+..+|..++..|++++|+.+|++++.++|.+. .+|..+|.+|..+|++++|+..|+++++++
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~----------~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 107 (275)
T 1xnf_A 38 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP----------EVFNYLGIYLTQAGNFDAAYEAFDSVLELD 107 (275)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH----------HHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4578899999999999999999999999999999999987 899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
|.+..++..+|.+|..+|++++|+..|++++++.|.+.. ...........++++ +|+
T Consensus 108 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--------------------~~~~~~~~~~~~~~~---~A~ 164 (275)
T 1xnf_A 108 PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF--------------------RSLWLYLAEQKLDEK---QAK 164 (275)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------------HHHHHHHHHHHHCHH---HHH
T ss_pred ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH--------------------HHHHHHHHHHhcCHH---HHH
Confidence 999999999999999999999999999999999997621 111112224557777 788
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC
Q 002199 603 ERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGK 682 (954)
Q Consensus 603 ~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~ 682 (954)
..+.+++...|.+...+. ++.+++..+++++|+..+++++...|.... .....++.+|.+|...|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~~~la~~~~~~g~ 230 (275)
T 1xnf_A 165 EVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAE-------------HLSETNFYLGKYYLSLGD 230 (275)
T ss_dssp HHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHH-------------HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccc-------------cccHHHHHHHHHHHHcCC
Confidence 899899998888766554 788888999999999999999998875421 112368899999999999
Q ss_pred HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 683 LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHY 744 (954)
Q Consensus 683 ~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y 744 (954)
+++|+.+|++++.+.|.+.. ..+.++...+++++|++.|
T Consensus 231 ~~~A~~~~~~al~~~p~~~~-----------------------~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 231 LDSATALFKLAVANNVHNFV-----------------------EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHTTCCTTCH-----------------------HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhCCchhHH-----------------------HHHHHHHHHHHHHhhHHHH
Confidence 99999999999999986643 1356677888899998887
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=213.23 Aligned_cols=218 Identities=14% Similarity=0.073 Sum_probs=180.4
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHH
Q 002199 507 RMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEI-ENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINC 585 (954)
Q Consensus 507 ~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~-eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~ 585 (954)
.+++|+..+..++...|..+.+++.+|.+|..+|+| ++|+.+|+++++++|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p---------------------------- 134 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP---------------------------- 134 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT----------------------------
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC----------------------------
Confidence 356677777777777777777888888888878877 777777777666443
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHH
Q 002199 586 SGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLA 665 (954)
Q Consensus 586 a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~ 665 (954)
.++.++..+|.+|..+|++++|+..|++++++.|+. .
T Consensus 135 ----------------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~-------------- 171 (474)
T 4abn_A 135 ----------------------------ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNK-V-------------- 171 (474)
T ss_dssp ----------------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCH-H--------------
T ss_pred ----------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCH-H--------------
Confidence 445566777777777778888888887777777652 2
Q ss_pred HHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Q 002199 666 RLWRWRLISKSYFCI---------GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS-- 734 (954)
Q Consensus 666 ~l~a~~~Lg~~y~~l---------G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~-- 734 (954)
++..+|.+|..+ |++++|+.+|+++++++|.+.. .+..+|.+|...
T Consensus 172 ---~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------------~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 172 ---SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR--------------------SWYILGNAYLSLYF 228 (474)
T ss_dssp ---HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH--------------------HHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH--------------------HHHHHHHHHHHHHH
Confidence 567778888888 9999999999999999997744 567789999998
Q ss_pred ------CCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 002199 735 ------GRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRD 808 (954)
Q Consensus 735 ------g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~ 808 (954)
|++++|+.+|++++.++|. .+..+.+|+++|.+|..+|++++|+..|+++++++|++..++..++.++..+|+
T Consensus 229 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 229 NTGQNPKISQQALSAYAQAEKVDRK-ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307 (474)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHCGG-GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hhccccchHHHHHHHHHHHHHhCCC-cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999821 018899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 002199 809 YTQAASDLQRL 819 (954)
Q Consensus 809 ~eeAi~~~ekA 819 (954)
+++|+..+.++
T Consensus 308 ~~eAi~~~~~~ 318 (474)
T 4abn_A 308 LTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHHhccc
Confidence 99999887654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.8e-19 Score=187.15 Aligned_cols=209 Identities=15% Similarity=0.015 Sum_probs=193.0
Q ss_pred HHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 445 QET-CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 445 ~~~-ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
|.. +..|..+|..++..|++++|+.+|++++...|.+. .++..+|.+|...|++++|+..|+++++++|
T Consensus 33 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~----------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 102 (252)
T 2ho1_A 33 RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA----------DAHAALAVVFQTEMEPKLADEEYRKALASDS 102 (252)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 444 89999999999999999999999999999999986 8999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHH
Q 002199 524 NFLKVYMRAAKCHLVLGEIENAQHYYHKLLN--SAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSA 601 (954)
Q Consensus 524 ~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~--l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eA 601 (954)
.+..++..+|.+|..+|++++|+.+|++++. ..|.. ...+..++..++..|+++ +|
T Consensus 103 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------------~~~~~~la~~~~~~g~~~---~A 160 (252)
T 2ho1_A 103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER-------------------SRVFENLGLVSLQMKKPA---QA 160 (252)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTH-------------------HHHHHHHHHHHHHTTCHH---HH
T ss_pred CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCccc-------------------HHHHHHHHHHHHHcCCHH---HH
Confidence 9999999999999999999999999999999 55543 445677888899999999 88
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcC
Q 002199 602 LERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIG 681 (954)
Q Consensus 602 L~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG 681 (954)
+..+.+++...|.++.++..+|.++..+|++++|+..+++++...|.+.. .+..++.++...|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g 223 (252)
T 2ho1_A 161 KEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNAR-----------------SLLLGIRLAKVFE 223 (252)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHH-----------------HHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH-----------------HHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999886643 5778899999999
Q ss_pred CHHHHHHHHHHHHhhCCCCcc
Q 002199 682 KLEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 682 ~~eeAl~~l~kal~l~p~~~~ 702 (954)
++++|+.++++++.+.|.+..
T Consensus 224 ~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 224 DRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp CHHHHHHHHHHHHHHCTTSHH
T ss_pred CHHHHHHHHHHHHHHCCCCHH
Confidence 999999999999999988754
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.5e-18 Score=201.85 Aligned_cols=347 Identities=12% Similarity=0.051 Sum_probs=256.6
Q ss_pred ccHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHH-HHH
Q 002199 425 NKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAA-TRI 503 (954)
Q Consensus 425 ~~~~~~e~~~~~~~~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~-~y~ 503 (954)
....+...+... ....|.....|...|..+.+.|++++|+..|++++...|+ . .+|..++. ++.
T Consensus 27 ~~~~a~~~~e~a----l~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~-~----------~lw~~~~~~~~~ 91 (530)
T 2ooe_A 27 PIDKARKTYERL----VAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH-I----------DLWKCYLSYVRE 91 (530)
T ss_dssp CHHHHHHHHHHH----HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC-H----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----HHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-h----------HHHHHHHHHHHH
Confidence 344444455543 2344677889999999999999999999999999999994 3 56766664 334
Q ss_pred HcCCHHHHHH----HHHHHHhc---CCCcHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhhchhhhhhHH---
Q 002199 504 SLGRMREALE----DCMMAATV---DPNFLKVYMRAAKCHLV---------LGEIENAQHYYHKLLNSAAAVCLDRR--- 564 (954)
Q Consensus 504 ~lg~~eeAl~----~~~kALel---~P~~~~a~~~LA~iy~~---------lG~~eeAl~~yekaL~l~P~~~~~~~--- 564 (954)
..|++++|.+ .|++++.. +|....+|...+..... .|++++|+..|++++. .|.......
T Consensus 92 ~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~ 170 (530)
T 2ooe_A 92 TKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRD 170 (530)
T ss_dssp HTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHH
T ss_pred HccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHH
Confidence 5677766655 66666653 56667777777776655 6788888888888887 343211000
Q ss_pred ----------------------HHHHHH----------------------------------------------------
Q 002199 565 ----------------------ITIEAA---------------------------------------------------- 570 (954)
Q Consensus 565 ----------------------~~~ea~---------------------------------------------------- 570 (954)
....+.
T Consensus 171 ~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~ 250 (530)
T 2ooe_A 171 YNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQ 250 (530)
T ss_dssp HHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCS
T ss_pred HHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcc
Confidence 000000
Q ss_pred --------HHHHHHH-----hHHHHHHHHHHHHH-------hcChHHH----HHHHHHHHHHHh-cCCCCHHHHHHHHHH
Q 002199 571 --------DGLQKAQ-----KVTEYINCSGKLLE-------QKTSEAA----SSALERINEALS-ISSCSEKLLEMKADA 625 (954)
Q Consensus 571 --------~~l~~~~-----~~~~~l~~a~~ll~-------~g~~~~a----~eAL~~l~kaL~-~~P~~~~~~~~lA~~ 625 (954)
..+.++. ....|+..+..+.. .|+++.+ .+|+..|++++. +.|.+..++..+|.+
T Consensus 251 ~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~ 330 (530)
T 2ooe_A 251 TLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 330 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 0000000 02234444444443 4665422 268999999997 899999999999999
Q ss_pred HHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhh
Q 002199 626 LYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGS 705 (954)
Q Consensus 626 ~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~ 705 (954)
+...|++++|+.+|++++++.|.+.. .+|..++.++.+.|++++|+..|+++++..|....
T Consensus 331 ~~~~g~~~~A~~~~~~al~~~p~~~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~--- 391 (530)
T 2ooe_A 331 EESRMKYEKVHSIYNRLLAIEDIDPT----------------LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH--- 391 (530)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSSCHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH---
T ss_pred HHhcCCHHHHHHHHHHHhCccccCch----------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH---
Confidence 99999999999999999999886521 16788899999999999999999999998765432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 706 EILESSMSLAGTVRALLHHKSAGNE-AFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSL 784 (954)
Q Consensus 706 ~~l~~~~~l~~~~~~~~~~~~lG~~-~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ek 784 (954)
.+...+.+ +...|++++|+.+|+++++.. |.++.+|..++.++..+|++++|...|++
T Consensus 392 -----------------~~~~~a~~~~~~~~~~~~A~~~~e~al~~~----p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 392 -----------------VYVTAALMEYYCSKDKSVAFKIFELGLKKY----GDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp -----------------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHcCChhHHHHHHHHHHHHC----CCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 11122322 346899999999999999998 77789999999999999999999999999
Q ss_pred HHHhCCCCHH----HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 785 AMALDENYTK----AVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 785 AL~ldP~~~~----al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
++...|.++. .|...+......|+.+.+...++++++..|++.
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 9998765543 787888888899999999999999999998643
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-18 Score=183.59 Aligned_cols=208 Identities=15% Similarity=0.057 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHH
Q 002199 492 VLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAAD 571 (954)
Q Consensus 492 a~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~ 571 (954)
+.+|+.+|.+++..|++++|+..|+++++++|.+..+++.+|.+|...|++++|+..|++++.+.|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------------- 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-------------- 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--------------
Confidence 578888899999999999999999999998888888888899999888888888888888766543
Q ss_pred HHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhch--hhhhh
Q 002199 572 GLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLP--VAEKN 649 (954)
Q Consensus 572 ~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~--l~p~~ 649 (954)
.+..++..+|.++...|++++|+.++++++. ..|.+
T Consensus 103 ------------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 140 (252)
T 2ho1_A 103 ------------------------------------------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER 140 (252)
T ss_dssp ------------------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTH
T ss_pred ------------------------------------------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCccc
Confidence 3455667778888888888888888888887 44433
Q ss_pred hhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 650 FASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGN 729 (954)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~ 729 (954)
.. ++..+|.+|...|++++|+.+|++++...|.+.. .+..+|.
T Consensus 141 ~~-----------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------------~~~~la~ 183 (252)
T 2ho1_A 141 SR-----------------VFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS--------------------VALEMAD 183 (252)
T ss_dssp HH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH--------------------HHHHHHH
T ss_pred HH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH--------------------HHHHHHH
Confidence 21 4556666666667766666666666665554321 2344555
Q ss_pred HHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHH
Q 002199 730 EAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAV 796 (954)
Q Consensus 730 ~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al 796 (954)
++...|++++|+.+|++++... |....++..++.++..+|++++|+.++++++++.|+++.++
T Consensus 184 ~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 184 LLYKEREYVPARQYYDLFAQGG----GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTS----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC----cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 5666666666666666665555 34445555556666666666666666666666666555543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-18 Score=179.67 Aligned_cols=210 Identities=13% Similarity=0.042 Sum_probs=192.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
.|..+..|..+|..++..|++++|+.+|+++++..|.+. .++..+|.++..+|++++|+..++++++++|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 73 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE----------LAWLVRAEIYQYLKVNDKAQESFRQALSIKP 73 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch----------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 467788999999999999999999999999999999986 8999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh--hchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHH
Q 002199 524 NFLKVYMRAAKCHLVL-GEIENAQHYYHKLLN--SAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASS 600 (954)
Q Consensus 524 ~~~~a~~~LA~iy~~l-G~~eeAl~~yekaL~--l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~e 600 (954)
.+..++..+|.++... |++++|+..|++++. ..|.. ...++.++..+...|+++ +
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------------~~~~~~l~~~~~~~~~~~---~ 131 (225)
T 2vq2_A 74 DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTP-------------------YIANLNKGICSAKQGQFG---L 131 (225)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCH-------------------HHHHHHHHHHHHHTTCHH---H
T ss_pred CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcch-------------------HHHHHHHHHHHHHcCCHH---H
Confidence 9999999999999999 999999999999999 44432 345778888999999999 8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhh-hhhhhhhhccCcchhhHHHHHHHHHHHHHHHH
Q 002199 601 ALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAE-KNFASVLADNGSVTYSLARLWRWRLISKSYFC 679 (954)
Q Consensus 601 AL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p-~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~ 679 (954)
|+..+.+++...|.++.++..+|.++...|++++|+..+++++...| .+.. .+..++.++..
T Consensus 132 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 194 (225)
T 2vq2_A 132 AEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD-----------------DLLLGWKIAKA 194 (225)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHH-----------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH-----------------HHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999988 6543 45678889999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcc
Q 002199 680 IGKLEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 680 lG~~eeAl~~l~kal~l~p~~~~ 702 (954)
.|+++.|..+++.++...|.+..
T Consensus 195 ~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 195 LGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cCcHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999888755
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-18 Score=191.65 Aligned_cols=304 Identities=14% Similarity=0.072 Sum_probs=236.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
....++.+..+|..++..|++++|+.++++++...|... ......++..+|.++...|++++|+..+++++.+.|
T Consensus 10 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 84 (373)
T 1hz4_A 10 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGW-----FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR 84 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC-----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCc-----hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 344577888999999999999999999999999987653 112355788999999999999999999999998865
Q ss_pred Cc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHH
Q 002199 524 NF------LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEA 597 (954)
Q Consensus 524 ~~------~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~ 597 (954)
.. ..++..+|.++..+|++++|+..|++++.+.+.. +..
T Consensus 85 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~---------------------------------~~~-- 129 (373)
T 1hz4_A 85 QHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ---------------------------------HLE-- 129 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------------------------------TCT--
T ss_pred hcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh---------------------------------ccc--
Confidence 33 3457889999999999999999999998864321 000
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHH
Q 002199 598 ASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSY 677 (954)
Q Consensus 598 a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y 677 (954)
..|....++..+|.++...|++++|+.++++++.+.+.... .. ....+..+|.++
T Consensus 130 -------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~-~~~~~~~la~~~ 184 (373)
T 1hz4_A 130 -------------QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP-----------QQ-QLQCLAMLIQCS 184 (373)
T ss_dssp -------------TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG-----------GG-GHHHHHHHHHHH
T ss_pred -------------cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc-----------HH-HHHHHHHHHHHH
Confidence 01223456778999999999999999999999998775321 00 123677899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchh
Q 002199 678 FCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPF 757 (954)
Q Consensus 678 ~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~ 757 (954)
...|++++|+.++++++.+.+...... . ........++.++...|++++|+.++++++...+.....
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~-~------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 251 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGNGKYHS-D------------WISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 251 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCH-H------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred HHcCCHHHHHHHHHHHHHHHhccCcch-h------------HHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh
Confidence 999999999999999998754322100 0 001112234566889999999999999998876543333
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 758 AAICFCNRAAALQALGQIADAIADCSLAMALDEN------YTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 758 ~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~------~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
....+..+|.++...|++++|+..+++++...+. ...++..+|.++..+|++++|...|++++.+.+.
T Consensus 252 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 4456789999999999999999999999887532 2358889999999999999999999999999654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-19 Score=193.49 Aligned_cols=282 Identities=12% Similarity=0.012 Sum_probs=183.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 440 ~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
.....|..+..+..+|..++..|+|++|+.+|++++++..... +......+.++..+|.+|..+|++++|+..+++++
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 96 (311)
T 3nf1_A 19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS--GHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL 96 (311)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4456688999999999999999999999999999999621100 00011235899999999999999999999999999
Q ss_pred hc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002199 520 TV--------DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLE 591 (954)
Q Consensus 520 el--------~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~ 591 (954)
.+ .|....++..+|.+|..+|++++|+.+|++++.+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--------------------------------- 143 (311)
T 3nf1_A 97 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK--------------------------------- 143 (311)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH---------------------------------
Confidence 88 4667889999999999999999999999998875211
Q ss_pred hcChHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHH
Q 002199 592 QKTSEAASSALERINEAL-SISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRW 670 (954)
Q Consensus 592 ~g~~~~a~eAL~~l~kaL-~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~ 670 (954)
.. ...|....++..+|.++...|++++|+.++++++.+...... .........+
T Consensus 144 ----------------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~ 198 (311)
T 3nf1_A 144 ----------------VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG---------PDDPNVAKTK 198 (311)
T ss_dssp ----------------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC---------TTCHHHHHHH
T ss_pred ----------------hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC---------CCCHHHHHHH
Confidence 00 012234567888999999999999999999999988432100 0001112367
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 671 RLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALST 750 (954)
Q Consensus 671 ~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l 750 (954)
..+|.+|...|++++|+.+|++++.+.+....... .............+...+..+...+.+.+|+..+.+++..
T Consensus 199 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 273 (311)
T 3nf1_A 199 NNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV-----DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD 273 (311)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHC-------CCSCCCC---------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-----CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC
Confidence 88999999999999999999999875321100000 0000000111222333444444555555555555555554
Q ss_pred ccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 002199 751 NIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDE 790 (954)
Q Consensus 751 ~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP 790 (954)
. |..+.++..+|.+|..+|++++|+.+|++++++.|
T Consensus 274 ~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 274 S----PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp C----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred C----chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 4 55555555556666666666666666655555544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-18 Score=189.54 Aligned_cols=279 Identities=13% Similarity=-0.018 Sum_probs=206.6
Q ss_pred hhHHHHHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHH-------cCC
Q 002199 443 AFQETCEMWRLRGNQAYKN----NNL----TEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRIS-------LGR 507 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~----g~y----~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~-------lg~ 507 (954)
..+.....|......-... ++. .+|+..|+++|..+|.++ .+|+++|.++.. +|+
T Consensus 3 ~~~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~----------~~w~~~~~~~~~~~~~l~~~g~ 72 (308)
T 2ond_A 3 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP----------DIWYEAAQYLEQSSKLLAEKGD 72 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCH----------HHHHHHHHHHHHhchhhhhccc
Confidence 3445555666555443332 233 789999999999999997 999999999874 588
Q ss_pred H-------HHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhH
Q 002199 508 M-------REALEDCMMAAT-VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKV 579 (954)
Q Consensus 508 ~-------eeAl~~~~kALe-l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~ 579 (954)
+ ++|+..|++|++ ++|++..+|..+|.++..+|++++|+..|++++++.|.+..
T Consensus 73 ~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------ 134 (308)
T 2ond_A 73 MNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT------------------ 134 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH------------------
T ss_pred hhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc------------------
Confidence 6 999999999999 79999999999999999999999999999999999886410
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHhchhhhhhhhhhhhccC
Q 002199 580 TEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYM-LRKYEEAIQLCEHTLPVAEKNFASVLADNG 658 (954)
Q Consensus 580 ~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~-lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~ 658 (954)
..++..+..+...|+++ +|+..|.+++...|....++...+.+... .|++++|+.+|+++++..|.+..
T Consensus 135 ~~~~~~~~~~~~~~~~~---~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~------- 204 (308)
T 2ond_A 135 LVYIQYMKFARRAEGIK---SGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE------- 204 (308)
T ss_dssp HHHHHHHHHHHHHHCHH---HHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHH-------
T ss_pred HHHHHHHHHHHHhcCHH---HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-------
Confidence 14666677777777877 77888888888888887777666555443 68888888888888888887643
Q ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 002199 659 SVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYT 738 (954)
Q Consensus 659 ~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~e 738 (954)
.|..++.++..+|++++|+.+|++++...+..+... ...+...+..+...|+++
T Consensus 205 ----------~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~----------------~~l~~~~~~~~~~~g~~~ 258 (308)
T 2ond_A 205 ----------YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS----------------GEIWARFLAFESNIGDLA 258 (308)
T ss_dssp ----------HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC----------------HHHHHHHHHHHHHHSCHH
T ss_pred ----------HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH----------------HHHHHHHHHHHHHcCCHH
Confidence 567788888888888888888888888532111100 123455677777788888
Q ss_pred HHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002199 739 EAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAA 801 (954)
Q Consensus 739 eAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ 801 (954)
+|+.+++++++..|+...... ++.+ ..-.+.+.++|.++.++..+|.
T Consensus 259 ~a~~~~~~a~~~~p~~~~~~~-----~~~~-----------~~r~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 259 SILKVEKRRFTAFREEYEGKE-----TALL-----------VDRYKFMDLYPCSASELKALGY 305 (308)
T ss_dssp HHHHHHHHHHHHTTTTTSSCH-----HHHH-----------HTTTCBTTBCSSCHHHHHTTTC
T ss_pred HHHHHHHHHHHHcccccccch-----HHHH-----------HHHHHhcccCCCCHHHHHhcCC
Confidence 888888888888864322210 1111 1112566778888888776663
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-19 Score=219.84 Aligned_cols=178 Identities=23% Similarity=0.232 Sum_probs=167.7
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 611 ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLL 690 (954)
Q Consensus 611 ~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l 690 (954)
..|+++.++.++|.+|..+|++++|+..|+++|+++|++.. +|+.+|.+|..+|++++|+.+|
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~-----------------a~~nLg~~l~~~g~~~eA~~~~ 66 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA-----------------AHSNLASVLQQQGKLQEALMHY 66 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH-----------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHH
Confidence 46889999999999999999999999999999999998855 7899999999999999999999
Q ss_pred HHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHH
Q 002199 691 QKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQ 770 (954)
Q Consensus 691 ~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~ 770 (954)
+++++++|++.. ++.++|.+|..+|++++|+++|++|++++ |..+.+|+++|.+|.
T Consensus 67 ~~Al~l~P~~~~--------------------a~~nLg~~l~~~g~~~~A~~~~~kAl~l~----P~~~~a~~~Lg~~~~ 122 (723)
T 4gyw_A 67 KEAIRISPTFAD--------------------AYSNMGNTLKEMQDVQGALQCYTRAIQIN----PAFADAHSNLASIHK 122 (723)
T ss_dssp HHHHHHCTTCHH--------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHH--------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHH
Confidence 999999997743 67889999999999999999999999999 888999999999999
Q ss_pred HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHH
Q 002199 771 ALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAE 829 (954)
Q Consensus 771 ~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~ 829 (954)
.+|++++|+..|++|++++|+++.++.++|.+|..+|++++|++.|++++++.|+..+.
T Consensus 123 ~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~~~ 181 (723)
T 4gyw_A 123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHHhh
Confidence 99999999999999999999999999999999999999999999999999999887553
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-19 Score=208.50 Aligned_cols=215 Identities=10% Similarity=0.035 Sum_probs=191.7
Q ss_pred CHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002199 463 NLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM-REALEDCMMAATVDPNFLKVYMRAAKCHLVLGE 541 (954)
Q Consensus 463 ~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~-eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~ 541 (954)
.+++|+..+.+++...|.+. .+|+.+|.+|..+|+| ++|+..|+++++++|++..+|+.+|.+|..+|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a----------~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 152 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEA----------QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGD 152 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCH----------HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccCchhH----------HHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Confidence 37778888888888888776 9999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh---------cChHHHHHHHHHHHHHHhcC
Q 002199 542 IENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQ---------KTSEAASSALERINEALSIS 612 (954)
Q Consensus 542 ~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~---------g~~~~a~eAL~~l~kaL~~~ 612 (954)
+++|+.+|+++++++|+ ...+..++..+... ++++ +|+..|++++.++
T Consensus 153 ~~~A~~~~~~al~~~p~--------------------~~~~~~lg~~~~~~~~~~~~~~~g~~~---~A~~~~~~al~~~ 209 (474)
T 4abn_A 153 VTSAHTCFSGALTHCKN--------------------KVSLQNLSMVLRQLQTDSGDEHSRHVM---DSVRQAKLAVQMD 209 (474)
T ss_dssp HHHHHHHHHHHHTTCCC--------------------HHHHHHHHHHHTTCCCSCHHHHHHHHH---HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhCCC--------------------HHHHHHHHHHHHHhccCChhhhhhhHH---HHHHHHHHHHHhC
Confidence 99999999999999986 23466677777777 7777 8999999999999
Q ss_pred CCCHHHHHHHHHHHHHc--------cCHHHHHHHHHHhchhhh---hhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcC
Q 002199 613 SCSEKLLEMKADALYML--------RKYEEAIQLCEHTLPVAE---KNFASVLADNGSVTYSLARLWRWRLISKSYFCIG 681 (954)
Q Consensus 613 P~~~~~~~~lA~~~~~l--------g~~eeAi~~~ekaL~l~p---~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG 681 (954)
|.++.++..+|.+|..+ |++++|+..|++++++.| .+.. +|+.+|.+|..+|
T Consensus 210 p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-----------------~~~~lg~~~~~~g 272 (474)
T 4abn_A 210 VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD-----------------LHLNRATLHKYEE 272 (474)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHH-----------------HHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHH-----------------HHHHHHHHHHHcC
Confidence 99999999999999999 999999999999999998 5543 7889999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 682 KLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVA 747 (954)
Q Consensus 682 ~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kA 747 (954)
++++|+..|+++++++|.+.. ++..++.++...|++++|+..+.+.
T Consensus 273 ~~~~A~~~~~~al~l~p~~~~--------------------a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 273 SYGEALEGFSQAAALDPAWPE--------------------PQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHHCTTCHH--------------------HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHhCCCCHH--------------------HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999998743 4556788888888888888766543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-18 Score=202.46 Aligned_cols=301 Identities=12% Similarity=-0.041 Sum_probs=216.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCCCcHHH
Q 002199 452 RLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM---REALEDCMMAATVDPNFLKV 528 (954)
Q Consensus 452 ~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~---eeAl~~~~kALel~P~~~~a 528 (954)
..+|..+++.|++++|+..|+++++.. +. .+++.+|.+|+..|++ ++|+..|+++++. ++.+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g--~~----------~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A 71 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG--YS----------EAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRA 71 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--CC----------TGGGTCC-------------------------------C
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC--CH----------HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHH
Confidence 457899999999999999999998874 43 6788999999999999 9999999999977 6789
Q ss_pred HHHHHHHHHHcC-----CHHHHHHHHHHHHhhchhhhhhHHHHHHH-------------HHHHH---HHHhHHHHHHHHH
Q 002199 529 YMRAAKCHLVLG-----EIENAQHYYHKLLNSAAAVCLDRRITIEA-------------ADGLQ---KAQKVTEYINCSG 587 (954)
Q Consensus 529 ~~~LA~iy~~lG-----~~eeAl~~yekaL~l~P~~~~~~~~~~ea-------------~~~l~---~~~~~~~~l~~a~ 587 (954)
++.+|.++...+ ++++|+.+|++++...+... ...+... ...+. .......++.++.
T Consensus 72 ~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A--~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~ 149 (452)
T 3e4b_A 72 QARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNT--LIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVL 149 (452)
T ss_dssp HHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSC--HHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999777776 88999999999998654331 1111111 11111 1223556777888
Q ss_pred HHHHhcChHHHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHhchhhhhhhhhhhhccCcchhh
Q 002199 588 KLLEQKTSEAAS-SALERINEALSISSCSEKLLEMKADALYMLR---KYEEAIQLCEHTLPVAEKNFASVLADNGSVTYS 663 (954)
Q Consensus 588 ~ll~~g~~~~a~-eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg---~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~ 663 (954)
.+...+.++.+. .+..++..+...+|. +++.+|.+|...| ++++|+.+|+++++..+....
T Consensus 150 ~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~------------ 214 (452)
T 3e4b_A 150 LYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ------------ 214 (452)
T ss_dssp HHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH------------
T ss_pred HHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH------------
Confidence 888877666433 344445555555554 8999999999999 999999999999999876632
Q ss_pred HHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHcCC
Q 002199 664 LARLWRWRLISKSYFCI----GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE-A--FKSGR 736 (954)
Q Consensus 664 ~~~l~a~~~Lg~~y~~l----G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~-~--~~~g~ 736 (954)
.++.+|.+|... +++++|+.+|+++. |.+.. ++.++|.+ + ...++
T Consensus 215 -----~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~--------------------a~~~Lg~~~~~~~~~~d 266 (452)
T 3e4b_A 215 -----RVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA--------------------SWVSLAQLLYDFPELGD 266 (452)
T ss_dssp -----HHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH--------------------HHHHHHHHHHHSGGGCC
T ss_pred -----HHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH--------------------HHHHHHHHHHhCCCCCC
Confidence 457899999765 79999999999997 44433 56678887 4 46899
Q ss_pred HHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hc
Q 002199 737 YTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALG-----QIADAIADCSLAMALDENYTKAVSRRAALHEM----IR 807 (954)
Q Consensus 737 ~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg-----~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~----lg 807 (954)
+++|+.+|++++... ++.+++++|.+|. .| ++++|+.+|++++ +.++.+++.+|.+|.. ..
T Consensus 267 ~~~A~~~~~~Aa~~g------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~ 336 (452)
T 3e4b_A 267 VEQMMKYLDNGRAAD------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKV 336 (452)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSC
T ss_pred HHHHHHHHHHHHHCC------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCc
Confidence 999999999998654 7889999999998 66 9999999999998 8999999999999987 45
Q ss_pred CHHHHHHHHHHHHHH
Q 002199 808 DYTQAASDLQRLVSI 822 (954)
Q Consensus 808 ~~eeAi~~~ekAL~l 822 (954)
++++|+.+|+++.+.
T Consensus 337 d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 337 YPQKALDHLLTAARN 351 (452)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.3e-19 Score=190.14 Aligned_cols=266 Identities=14% Similarity=0.044 Sum_probs=195.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhh
Q 002199 490 PLVLCYSNRAATRISLGRMREALEDCMMAATV--------DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCL 561 (954)
Q Consensus 490 ~la~~~~~lA~~y~~lg~~eeAl~~~~kALel--------~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~ 561 (954)
..+.++..+|.++...|++++|+..|++++++ .|....++..+|.+|..+|++++|+.+|++++.+...
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--- 101 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK--- 101 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---
Confidence 46789999999999999999999999999995 6777889999999999999999999999998875211
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 002199 562 DRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEAL-SISSCSEKLLEMKADALYMLRKYEEAIQLCE 640 (954)
Q Consensus 562 ~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL-~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~e 640 (954)
.. ...|....++..+|.++..+|++++|+.+++
T Consensus 102 ----------------------------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 135 (311)
T 3nf1_A 102 ----------------------------------------------TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCK 135 (311)
T ss_dssp ----------------------------------------------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ----------------------------------------------HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 00 1123345678889999999999999999999
Q ss_pred HhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHH
Q 002199 641 HTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRA 720 (954)
Q Consensus 641 kaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~ 720 (954)
+++++...... ........++..+|.+|...|++++|+.+|++++.+...... ......
T Consensus 136 ~a~~~~~~~~~---------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------~~~~~~ 194 (311)
T 3nf1_A 136 RALEIREKVLG---------KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG------------PDDPNV 194 (311)
T ss_dssp HHHHHHHHHHC---------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC------------TTCHHH
T ss_pred HHHHHHHHhcC---------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC------------CCCHHH
Confidence 99988632200 000112347889999999999999999999999886211000 001123
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC-----ch------hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES-----RP------FAAICFCNRAAALQALGQIADAIADCSLAMALD 789 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~-----~p------~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld 789 (954)
...+..+|.++...|++++|+.+|++++.+.+.. .+ .....+..++..+...+.+.+|+..+.+++...
T Consensus 195 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 274 (311)
T 3nf1_A 195 AKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS 274 (311)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC
Confidence 4567789999999999999999999999874210 01 134445555666667778888899999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 790 ENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 790 P~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
|..+.++..+|.+|..+|++++|+.+|++++++.|.
T Consensus 275 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 275 PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.5e-18 Score=173.48 Aligned_cols=65 Identities=17% Similarity=0.077 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 491 LVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 491 la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
.+.++..+|.+++..|++++|+..|+++++++|.+..++..+|.++..+|++++|+..|++++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 71 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI 71 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 34555556666666666666666666666666655556666666666666655555555555443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.2e-18 Score=177.36 Aligned_cols=158 Identities=11% Similarity=0.074 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVP-LSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P-~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
++.|+.+|..++..|+|++|+.+|+++++++| .+. .+++++|.++..+|++++|+..|+++++++|++.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 76 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS----------VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA 76 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc----------HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH
Confidence 37899999999999999999999999999998 665 7888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERIN 606 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~ 606 (954)
.+++.+|.+|..+|++++|+..|++++++.|.+.... .
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---------------------------------------~--- 114 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIE---------------------------------------K--- 114 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH---------------------------------------H---
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHH---------------------------------------H---
Confidence 9999999999999999999999999999988652100 0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhh--hhhhhhhccCcchhhHHHHHHHHHHHHHHHHcC
Q 002199 607 EALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEK--NFASVLADNGSVTYSLARLWRWRLISKSYFCIG 681 (954)
Q Consensus 607 kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~--~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG 681 (954)
....++..+|.++..+|++++|+..|++++++.|. +.. +|+.+|.+|+..|
T Consensus 115 -------~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~~~l~~~~~~~~ 167 (228)
T 4i17_A 115 -------LYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTD-----------------ALYSLGVLFYNNG 167 (228)
T ss_dssp -------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHH-----------------HHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHH-----------------HHHHHHHHHHHHH
Confidence 00125777888888899999999999999988887 533 6677787776544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.7e-19 Score=216.04 Aligned_cols=178 Identities=15% Similarity=0.185 Sum_probs=168.5
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 442 AAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
...|+.+++|..+|..+.++|+|++|+.+|++||+++|++. .+|+++|.+|..+|++++|+..|++||++
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~----------~a~~nLg~~l~~~g~~~eA~~~~~~Al~l 72 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA----------AAHSNLASVLQQQGKLQEALMHYKEAIRI 72 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35688999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHH
Q 002199 522 DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSA 601 (954)
Q Consensus 522 ~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eA 601 (954)
+|+++.+|+++|.+|..+|++++|++.|+++++++|++ ...+.+++..+...|+++ +|
T Consensus 73 ~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~-------------------~~a~~~Lg~~~~~~g~~~---eA 130 (723)
T 4gyw_A 73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF-------------------ADAHSNLASIHKDSGNIP---EA 130 (723)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHTTCHH---HH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHcCCHH---HH
Confidence 99999999999999999999999999999999999986 566889999999999999 89
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhh
Q 002199 602 LERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFA 651 (954)
Q Consensus 602 L~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~ 651 (954)
+..|+++++++|+++.++..+|.+|..+|++++|++.+++++++.|+...
T Consensus 131 i~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~~ 180 (723)
T 4gyw_A 131 IASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLE 180 (723)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHHh
Confidence 99999999999999999999999999999999999999999999887643
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-18 Score=179.76 Aligned_cols=205 Identities=13% Similarity=0.061 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhcc
Q 002199 579 VTEYINCSGKLLEQKTSEAASSALERINEALSISS-CSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADN 657 (954)
Q Consensus 579 ~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P-~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~ 657 (954)
...++..|..++..|+++ +|+..|.+++.+.| .+..+++.+|.++..+|++++|+..|++++.+.|.+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------ 77 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYA---VAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN------ 77 (228)
T ss_dssp HHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH------
T ss_pred HHHHHHHHHHHHHccCHH---HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH------
Confidence 356777888888888888 78888888888887 77778888888888888888888888888888876643
Q ss_pred CcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Q 002199 658 GSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRY 737 (954)
Q Consensus 658 ~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~ 737 (954)
+|+.+|.+|..+|++++|+..|++++.+.|.+... ....+..+..+|.++...|++
T Consensus 78 -----------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-------------~~~~~~~~~~~g~~~~~~~~~ 133 (228)
T 4i17_A 78 -----------AYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI-------------EKLYAIYYLKEGQKFQQAGNI 133 (228)
T ss_dssp -----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-------------HHHHHHHHHHHHHHHHHTTCH
T ss_pred -----------HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH-------------HHHHHHHHHHHhHHHHHhccH
Confidence 67778888888888888888888888888766431 123346677888888888888
Q ss_pred HHHHHHHHHHHhhccCCchh--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 002199 738 TEAVEHYTVALSTNIESRPF--AAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASD 815 (954)
Q Consensus 738 eeAi~~y~kAL~l~~~~~p~--~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~ 815 (954)
++|+.+|++++.++ |. .+.+++++|.+|..+|+ ..++++..+.+.....+ .+......+.|++|+.+
T Consensus 134 ~~A~~~~~~al~~~----p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~ 202 (228)
T 4i17_A 134 EKAEENYKHATDVT----SKKWKTDALYSLGVLFYNNGA-----DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDY 202 (228)
T ss_dssp HHHHHHHHHHTTSS----CHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC----CCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHH
Confidence 88888888888887 67 77888888888876553 34566666766664433 44556667778999999
Q ss_pred HHHHHHHhhhhH
Q 002199 816 LQRLVSILENQS 827 (954)
Q Consensus 816 ~ekAL~l~p~~~ 827 (954)
|++++++.|++.
T Consensus 203 ~~~a~~l~p~~~ 214 (228)
T 4i17_A 203 LGEAVTLSPNRT 214 (228)
T ss_dssp HHHHHHHCTTCH
T ss_pred HHHHhhcCCCCH
Confidence 999999965543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.8e-18 Score=192.48 Aligned_cols=256 Identities=13% Similarity=0.022 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP------ 523 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P------ 523 (954)
.++.+|..++..|+|++|+.+|++|+.+..... .....+.+++++|.+|..+|++++|+..+++|+++.+
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVK----DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCC----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 455599999999999999999999999844322 0123568999999999999999999999999999843
Q ss_pred -CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 524 -NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 524 -~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
....++..+|.+|..+|++++|+.+|++++.+.+... +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---------------------------------~~------- 220 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK---------------------------------QP------- 220 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---------------------------------CH-------
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC---------------------------------Ch-------
Confidence 3356899999999999999999999999998755320 00
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC
Q 002199 603 ERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGK 682 (954)
Q Consensus 603 ~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~ 682 (954)
+....++..+|.+|..+|++++|+.++++++.+.+..... . ....++..+|.+|..+|+
T Consensus 221 ----------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~---------~--~~~~~~~~l~~~~~~~g~ 279 (383)
T 3ulq_A 221 ----------QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL---------P--SLPQAYFLITQIHYKLGK 279 (383)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG---------G--GHHHHHHHHHHHHHHTTC
T ss_pred ----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc---------h--hHHHHHHHHHHHHHHCCC
Confidence 0123467889999999999999999999999975432110 0 112368899999999999
Q ss_pred HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhccCCchhhH
Q 002199 683 LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGR---YTEAVEHYTVALSTNIESRPFAA 759 (954)
Q Consensus 683 ~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~---~eeAi~~y~kAL~l~~~~~p~~a 759 (954)
+++|+.++++++.+.+.... ......+..+|.++...|+ +.+|+.+++++ . ..+...
T Consensus 280 ~~~A~~~~~~al~~~~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~----~~~~~~ 339 (383)
T 3ulq_A 280 IDKAHEYHSKGMAYSQKAGD---------------VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-M----LYADLE 339 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHTC---------------HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-T----CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-c----CHHHHH
Confidence 99999999999886432111 0111224568999999999 78888888776 2 226778
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 002199 760 ICFCNRAAALQALGQIADAIADCSLAMALDE 790 (954)
Q Consensus 760 ~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP 790 (954)
.++..+|.+|..+|++++|+.+|++++.+..
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999998754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.6e-18 Score=179.46 Aligned_cols=213 Identities=13% Similarity=0.044 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNF---LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEA 569 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~---~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea 569 (954)
..++.+|.+++..|+|++|+..|+++++.+|.+ ..+++.+|.+|..+|++++|+..|++++.+.|.+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~---------- 85 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID---------- 85 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC----------
Confidence 899999999999999999999999999999998 8999999999999999999999999999988753
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--------ccCHHHHHHHHHH
Q 002199 570 ADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYM--------LRKYEEAIQLCEH 641 (954)
Q Consensus 570 ~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~--------lg~~eeAi~~~ek 641 (954)
|..+.+++.+|.+++. +|++++|+..|++
T Consensus 86 -------------------------------------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~ 122 (261)
T 3qky_A 86 -------------------------------------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQL 122 (261)
T ss_dssp -------------------------------------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHH
T ss_pred -------------------------------------------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHH
Confidence 2335567888899988 9999999999999
Q ss_pred hchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHH
Q 002199 642 TLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRAL 721 (954)
Q Consensus 642 aL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~ 721 (954)
++...|++.. ++..+.. +..+. ....
T Consensus 123 ~l~~~p~~~~-----------------~~~a~~~--------------~~~~~-----------------------~~~~ 148 (261)
T 3qky_A 123 FIDRYPNHEL-----------------VDDATQK--------------IRELR-----------------------AKLA 148 (261)
T ss_dssp HHHHCTTCTT-----------------HHHHHHH--------------HHHHH-----------------------HHHH
T ss_pred HHHHCcCchh-----------------HHHHHHH--------------HHHHH-----------------------HHHH
Confidence 9999887632 1111111 11110 0112
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHHhCCC
Q 002199 722 LHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQAL----------GQIADAIADCSLAMALDEN 791 (954)
Q Consensus 722 ~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~l----------g~~eeAi~~~ekAL~ldP~ 791 (954)
..+..+|.+|+..|+|++|+..|++++...|.. +....+++.+|.+|..+ |++++|+..|+++++..|+
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDT-PWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS-TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 235678999999999999999999999998654 45788999999999987 9999999999999999999
Q ss_pred CH---HHHHHHHHHHHHhcCHHHHH
Q 002199 792 YT---KAVSRRAALHEMIRDYTQAA 813 (954)
Q Consensus 792 ~~---~al~~lA~ly~~lg~~eeAi 813 (954)
++ .++..++.++..+++++++.
T Consensus 228 ~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 228 SPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 84 56666777777777766544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.4e-18 Score=184.47 Aligned_cols=258 Identities=10% Similarity=0.010 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 002199 466 EAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISL---GRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEI 542 (954)
Q Consensus 466 eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~l---g~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~ 542 (954)
+|.+++.+|-+..+... ..+ .++.. +++++|+..|.++ |.+|..+|++
T Consensus 3 ~a~~~~~~a~k~~~~~~----------~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~ 53 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSS----------GFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKEL 53 (292)
T ss_dssp CHHHHHHHHHHHSSCCC----------THH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCT
T ss_pred cHHHHHHHHHHHhCcCC----------Ccc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCH
Confidence 57788888888877642 122 12232 2599999999887 6678899999
Q ss_pred HHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002199 543 ENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMK 622 (954)
Q Consensus 543 eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~l 622 (954)
++|+.+|++++.+.+.. ++.. ....++..+
T Consensus 54 ~~A~~~~~~al~~~~~~---------------------------------~~~~-----------------~~a~~~~~l 83 (292)
T 1qqe_A 54 NLAGDSFLKAADYQKKA---------------------------------GNED-----------------EAGNTYVEA 83 (292)
T ss_dssp HHHHHHHHHHHHHHHHT---------------------------------TCHH-----------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh---------------------------------CCHH-----------------HHHHHHHHH
Confidence 99999999998864421 1111 113467889
Q ss_pred HHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCc
Q 002199 623 ADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI-GKLEVALDLLQKLEQVGSISD 701 (954)
Q Consensus 623 A~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l-G~~eeAl~~l~kal~l~p~~~ 701 (954)
|.+|..+|++++|+.+|++++.+.+.... ......++..+|.+|... |++++|+.+|++++.+.|...
T Consensus 84 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~-----------~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~ 152 (292)
T 1qqe_A 84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQ-----------FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ 152 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999875421 111233678999999996 999999999999999866432
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCch---hhHHHHHHHHHHHHHhcCHHHH
Q 002199 702 RYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRP---FAAICFCNRAAALQALGQIADA 778 (954)
Q Consensus 702 ~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p---~~a~~~~~lA~~y~~lg~~eeA 778 (954)
. .......+.++|.++...|+|++|+.+|++++.+.|.... ....++.++|.++..+|++++|
T Consensus 153 ~--------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 218 (292)
T 1qqe_A 153 S--------------VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA 218 (292)
T ss_dssp C--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred C--------------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 2 1112345778999999999999999999999999875432 2345889999999999999999
Q ss_pred HHHHHHHHHhCCCCHHH-----HHHHHHHHH--HhcCHHHHHHHHHHHHHHhhhhH
Q 002199 779 IADCSLAMALDENYTKA-----VSRRAALHE--MIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 779 i~~~ekAL~ldP~~~~a-----l~~lA~ly~--~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
+.+|++++.++|.+..+ +..++.++. ..+++++|+..|++++.++|...
T Consensus 219 ~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 219 ARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp HHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 99999999999987654 444555554 45789999999999999977553
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.1e-17 Score=183.30 Aligned_cols=330 Identities=15% Similarity=0.069 Sum_probs=234.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHH--HHHcCCHHHHH---------HHHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAAT--RISLGRMREAL---------EDCM 516 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~--y~~lg~~eeAl---------~~~~ 516 (954)
.......=..+..++++++|+.+++++....+... .......|+.+-.. .+.++.+..+. ..++
T Consensus 12 v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~-----~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQME-----EDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBC-----CCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 33333334456889999999999998876543321 11112333333222 11222222222 3333
Q ss_pred HHHhcC-C--Cc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 002199 517 MAATVD-P--NF--LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLE 591 (954)
Q Consensus 517 kALel~-P--~~--~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~ 591 (954)
++-... + .. ...++.+|..+...|++++|+..|++++.+.+.... .......+..+|..+..
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~~~a~~~~~lg~~y~~ 153 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD-------------DIEKAEFHFKVAEAYYH 153 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-------------HHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC-------------hHHHHHHHHHHHHHHHH
Confidence 322211 1 11 236778999999999999999999999997653211 11235567888999999
Q ss_pred hcChHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhH
Q 002199 592 QKTSEAASSALERINEALSISSC-------SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSL 664 (954)
Q Consensus 592 ~g~~~~a~eAL~~l~kaL~~~P~-------~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~ 664 (954)
.|+++ .|+..+.+++.+.+. ...++..+|.+|..+|++++|+..|++++++.+.... ..
T Consensus 154 ~~~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-----------~~ 219 (378)
T 3q15_A 154 MKQTH---VSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN-----------DR 219 (378)
T ss_dssp TTCHH---HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------HH
T ss_pred cCCcH---HHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC-----------HH
Confidence 99999 788888888876432 2567889999999999999999999999998764311 11
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 665 ARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHY 744 (954)
Q Consensus 665 ~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y 744 (954)
....++..+|.+|..+|++++|+.+|++++.+.... .......++..+|.++...|++++|+.+|
T Consensus 220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 284 (378)
T 3q15_A 220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---------------VPDLLPKVLFGLSWTLCKAGQTQKAFQFI 284 (378)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---------------CGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---------------CChhHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 223478899999999999999999999998842210 01112456788999999999999999999
Q ss_pred HHHHhhccCC-chhhHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002199 745 TVALSTNIES-RPFAAICFCNRAAALQALGQ---IADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLV 820 (954)
Q Consensus 745 ~kAL~l~~~~-~p~~a~~~~~lA~~y~~lg~---~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL 820 (954)
++++.+.+.. .+.....+..++.++...++ +.+|+..+++. ...|....++..+|.+|..+|++++|+.+|++++
T Consensus 285 ~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 285 EEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999986432 24445567888888988888 88888888872 2334556788899999999999999999999999
Q ss_pred HHhhh
Q 002199 821 SILEN 825 (954)
Q Consensus 821 ~l~p~ 825 (954)
++...
T Consensus 364 ~~~~~ 368 (378)
T 3q15_A 364 KAQED 368 (378)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-17 Score=175.95 Aligned_cols=208 Identities=13% Similarity=0.089 Sum_probs=170.5
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHH
Q 002199 609 LSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALD 688 (954)
Q Consensus 609 L~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~ 688 (954)
..+.|.++..++.+|..++..|+|++|+..|++++...|.+... ..+++.+|.+|+.+|++++|+.
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~--------------~~a~~~lg~~~~~~~~~~~A~~ 73 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWA--------------ADAQFYLARAYYQNKEYLLAAS 73 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTH--------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcch--------------HHHHHHHHHHHHHhCcHHHHHH
Confidence 34678899999999999999999999999999999999876210 1268899999999999999999
Q ss_pred HHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhccCCchhhHH
Q 002199 689 LLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFK--------SGRYTEAVEHYTVALSTNIESRPFAAI 760 (954)
Q Consensus 689 ~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~--------~g~~eeAi~~y~kAL~l~~~~~p~~a~ 760 (954)
.|++++.+.|.++.. ..++..+|.+++. .|++++|+..|++++...|.+ +....
T Consensus 74 ~~~~~l~~~p~~~~~-----------------~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~ 135 (261)
T 3qky_A 74 EYERFIQIYQIDPRV-----------------PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH-ELVDD 135 (261)
T ss_dssp HHHHHHHHCTTCTTH-----------------HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC-TTHHH
T ss_pred HHHHHHHHCCCCchh-----------------HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc-hhHHH
Confidence 999999999977541 2457779999999 999999999999999999654 23333
Q ss_pred HH--------------HHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHh----------cCHHHHH
Q 002199 761 CF--------------CNRAAALQALGQIADAIADCSLAMALDEN---YTKAVSRRAALHEMI----------RDYTQAA 813 (954)
Q Consensus 761 ~~--------------~~lA~~y~~lg~~eeAi~~~ekAL~ldP~---~~~al~~lA~ly~~l----------g~~eeAi 813 (954)
++ +.+|.+|..+|++++|+..|++++...|+ .+.+++.+|.+|..+ |++++|+
T Consensus 136 a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~ 215 (261)
T 3qky_A 136 ATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAV 215 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHH
Confidence 33 88999999999999999999999999998 578999999999987 9999999
Q ss_pred HHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhh
Q 002199 814 SDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEE 858 (954)
Q Consensus 814 ~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~ 858 (954)
..|+++++.+|+.... ..+...+..+...++.++.
T Consensus 216 ~~~~~~~~~~p~~~~~----------~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 216 ELYERLLQIFPDSPLL----------RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHCTTCTHH----------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCChHH----------HHHHHHHHHHHHHHHHhhh
Confidence 9999999997764332 1223455555555554433
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-16 Score=175.38 Aligned_cols=230 Identities=13% Similarity=0.040 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHH
Q 002199 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVL-------GEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTE 581 (954)
Q Consensus 509 eeAl~~~~kALel~P~~~~a~~~LA~iy~~l-------G~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~ 581 (954)
++|+..|++++.++|.++.+|+.+|.++... |++..+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~------------------------------------ 76 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNA------------------------------------ 76 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHH------------------------------------
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhc------------------------------------
Confidence 7899999999999999999999999998754 443211
Q ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcc
Q 002199 582 YINCSGKLLEQKTSEAASSALERINEALS-ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSV 660 (954)
Q Consensus 582 ~l~~a~~ll~~g~~~~a~eAL~~l~kaL~-~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~ 660 (954)
.+.++ +|+..|++++. +.|.+..+|..+|.++...|++++|+..|++++.+.|.+..
T Consensus 77 ----------~~~~~---~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------- 134 (308)
T 2ond_A 77 ----------KLFSD---EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------- 134 (308)
T ss_dssp ----------HHHHH---HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH---------
T ss_pred ----------ccchH---HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc---------
Confidence 01112 56666777777 57888889999999999999999999999999999886532
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCHHH
Q 002199 661 TYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAF-KSGRYTE 739 (954)
Q Consensus 661 ~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~-~~g~~ee 739 (954)
.+|..+|.++...|++++|+..|+++++..|.... .+...+.... ..|++++
T Consensus 135 -------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~--------------------~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 135 -------LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH--------------------VYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp -------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH--------------------HHHHHHHHHHHTSCCHHH
T ss_pred -------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH--------------------HHHHHHHHHHHHcCCHHH
Confidence 15778899999999999999999999998886533 1222333322 2699999
Q ss_pred HHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHhcCHHHHHHH
Q 002199 740 AVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL---DEN-YTKAVSRRAALHEMIRDYTQAASD 815 (954)
Q Consensus 740 Ai~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l---dP~-~~~al~~lA~ly~~lg~~eeAi~~ 815 (954)
|+..|++++.+. |..+.+|..+|.++..+|++++|+..|++++.. .|+ ...+|..++..+...|++++|...
T Consensus 188 A~~~~~~al~~~----p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 188 AFKIFELGLKKY----GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHhC----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999998 678899999999999999999999999999995 554 788999999999999999999999
Q ss_pred HHHHHHHhhhhH
Q 002199 816 LQRLVSILENQS 827 (954)
Q Consensus 816 ~ekAL~l~p~~~ 827 (954)
++++++++|++.
T Consensus 264 ~~~a~~~~p~~~ 275 (308)
T 2ond_A 264 EKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHTTTTT
T ss_pred HHHHHHHccccc
Confidence 999999999865
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.8e-17 Score=182.93 Aligned_cols=257 Identities=10% Similarity=0.006 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN-- 524 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~-- 524 (954)
....++.+|..++..|+|++|+.+|++|+.+.+... .....+.+++++|.+|..+|++++|+..+++|+++.+.
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 175 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVS----DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP 175 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCC----ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC
Confidence 344678899999999999999999999999865432 12345789999999999999999999999999987542
Q ss_pred -----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHH
Q 002199 525 -----FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAAS 599 (954)
Q Consensus 525 -----~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~ 599 (954)
...++..+|.+|..+|++++|+.+|++++.+.+.. ++.
T Consensus 176 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---------------------------------~~~---- 218 (378)
T 3q15_A 176 LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI---------------------------------QND---- 218 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------------------------------TCH----
T ss_pred CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc---------------------------------CCH----
Confidence 35688999999999999999999999998864321 000
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFC 679 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~ 679 (954)
+....++..+|.+|..+|++++|+.++++++.+.+.... +.. ..++..+|.+|..
T Consensus 219 -------------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-----------~~~-~~~~~~la~~~~~ 273 (378)
T 3q15_A 219 -------------RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-----------DLL-PKVLFGLSWTLCK 273 (378)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-----------GGH-HHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-----------hhH-HHHHHHHHHHHHH
Confidence 012346788999999999999999999999996543211 011 2378899999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhccCCch
Q 002199 680 IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGR---YTEAVEHYTVALSTNIESRP 756 (954)
Q Consensus 680 lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~---~eeAi~~y~kAL~l~~~~~p 756 (954)
+|++++|+.++++++.+.+....... ...+..++.++...++ +.+|+.++++.- ..+
T Consensus 274 ~g~~~~A~~~~~~al~~~~~~~~~~~---------------~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-----~~~ 333 (378)
T 3q15_A 274 AGQTQKAFQFIEEGLDHITARSHKFY---------------KELFLFLQAVYKETVDERKIHDLLSYFEKKN-----LHA 333 (378)
T ss_dssp TTCHHHHHHHHHHHHHHCCTTCCSCH---------------HHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-----CHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHH---------------HHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-----Chh
Confidence 99999999999999998765433111 0123446777888888 888888887731 226
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 002199 757 FAAICFCNRAAALQALGQIADAIADCSLAMALD 789 (954)
Q Consensus 757 ~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld 789 (954)
....++..+|.+|..+|++++|+.+|++++++.
T Consensus 334 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 334 YIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 677888999999999999999999999998764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-17 Score=192.07 Aligned_cols=312 Identities=13% Similarity=-0.010 Sum_probs=218.3
Q ss_pred HHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC-----CHHHHHHHHHH
Q 002199 446 ETCEMWRLRGNQAYKNNNL---TEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG-----RMREALEDCMM 517 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y---~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg-----~~eeAl~~~~k 517 (954)
..+++++.+|..|+..|++ ++|+..|+++++. ++ .+++++|.++...+ ++++|+..|++
T Consensus 33 g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~----------~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~ 99 (452)
T 3e4b_A 33 GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SP----------RAQARLGRLLAAKPGATEAEHHEAESLLKK 99 (452)
T ss_dssp TCCTGGGTCC-----------------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CH----------HHHHHHHHHHHhCCCCCCcCHHHHHHHHHH
Confidence 4566788899999999988 9999999999977 33 67899999777766 88999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchh-hhhhHHH--------------HHHHHHHHHHH--HhHH
Q 002199 518 AATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAA-VCLDRRI--------------TIEAADGLQKA--QKVT 580 (954)
Q Consensus 518 ALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~-~~~~~~~--------------~~ea~~~l~~~--~~~~ 580 (954)
+++.. ++.+++.||.+|...+...++...++......+. +...... ...+...+..+ ....
T Consensus 100 Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~ 177 (452)
T 3e4b_A 100 AFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI 177 (452)
T ss_dssp HHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT
T ss_pred HHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH
Confidence 99854 4458999999999887765544444333332211 1111100 01111111111 1244
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHhchhhhhhhhhhhhc
Q 002199 581 EYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYML----RKYEEAIQLCEHTLPVAEKNFASVLAD 656 (954)
Q Consensus 581 ~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~l----g~~eeAi~~~ekaL~l~p~~~~~~~~~ 656 (954)
.++.++..+...|...+..+|+..|+++....|.....++.+|.+|... +++++|+.+|+++. |.+..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~----- 249 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA----- 249 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH-----
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH-----
Confidence 6788888888888665666999999999999999999999999999776 79999999999998 55543
Q ss_pred cCcchhhHHHHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 657 NGSVTYSLARLWRWRLISKS-Y--FCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFK 733 (954)
Q Consensus 657 ~~~~~~~~~~l~a~~~Lg~~-y--~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~ 733 (954)
+++.||.+ | ...+++++|+.+|+++.... + ..++..+|.+|.
T Consensus 250 ------------a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~--------------------~~A~~~Lg~~y~- 294 (452)
T 3e4b_A 250 ------------SWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--Q--------------------PRAELLLGKLYY- 294 (452)
T ss_dssp ------------HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--C--------------------HHHHHHHHHHHH-
T ss_pred ------------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--C--------------------HHHHHHHHHHHH-
Confidence 67889998 4 57899999999999998653 1 246777899988
Q ss_pred cC-----CHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002199 734 SG-----RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA----LGQIADAIADCSLAMALDENYTKAVSRRAALHE 804 (954)
Q Consensus 734 ~g-----~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~----lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~ 804 (954)
.| ++++|+.+|++|+ +.++.+++++|.+|.. ..++++|+.+|+++.+ +.++.+.+.+|.+|.
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa-------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV-------GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFS 365 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT-------TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHh-------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHH
Confidence 55 9999999999998 2367899999999887 4499999999999987 467889999999998
Q ss_pred H----hcCHHHHHHHHHHHHHHhh
Q 002199 805 M----IRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 805 ~----lg~~eeAi~~~ekAL~l~p 824 (954)
. ..++.+|+.+|+++.+.-+
T Consensus 366 ~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 366 QGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp SCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred hCCCCCCCHHHHHHHHHHHHHCCC
Confidence 5 5699999999999988743
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=6.4e-17 Score=176.95 Aligned_cols=243 Identities=14% Similarity=-0.003 Sum_probs=182.0
Q ss_pred CHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHH
Q 002199 463 NLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN------FLKVYMRAAKCH 536 (954)
Q Consensus 463 ~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~------~~~a~~~LA~iy 536 (954)
+|++|+.+|.++ |.+|..+|+|++|+..|.+++++.+. ...++..+|.+|
T Consensus 32 ~~~~A~~~~~~a------------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~ 87 (292)
T 1qqe_A 32 KFEEAADLCVQA------------------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCF 87 (292)
T ss_dssp HHHHHHHHHHHH------------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH------------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 478888777765 44567889999999999999988532 267899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCH
Q 002199 537 LVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSE 616 (954)
Q Consensus 537 ~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~ 616 (954)
..+|++++|+.+|++++.+.|.. +++.. ..
T Consensus 88 ~~~g~~~~A~~~~~~Al~l~~~~---------------------------------g~~~~-----------------~a 117 (292)
T 1qqe_A 88 KSGGNSVNAVDSLENAIQIFTHR---------------------------------GQFRR-----------------GA 117 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT---------------------------------TCHHH-----------------HH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHc---------------------------------CCHHH-----------------HH
Confidence 99999999999999999875531 22221 12
Q ss_pred HHHHHHHHHHHHc-cCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 617 KLLEMKADALYML-RKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQ 695 (954)
Q Consensus 617 ~~~~~lA~~~~~l-g~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~ 695 (954)
.++..+|.+|... |++++|+.+|++++++.|.... .......+..+|.+|..+|++++|+.+|++++.
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~-----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-----------VALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC-----------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3567899999996 9999999999999999886421 011122578899999999999999999999999
Q ss_pred hCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCch-hhHHHHHHHHHHHH--Hh
Q 002199 696 VGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRP-FAAICFCNRAAALQ--AL 772 (954)
Q Consensus 696 l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p-~~a~~~~~lA~~y~--~l 772 (954)
+.|....... .....+..+|.++...|++++|+.+|++++.++|.... .....+..++.++. ..
T Consensus 187 ~~~~~~~~~~-------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 187 SSMGNRLSQW-------------SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp TTSSCTTTGG-------------GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT
T ss_pred HHhcCCcccH-------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 9887654210 11235677899999999999999999999999864322 22334556666664 45
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 773 GQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 773 g~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
+++++|+..|++++.++|.+...+..+-..+
T Consensus 254 ~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp TTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 7899999999999999998776666555444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.3e-17 Score=167.87 Aligned_cols=172 Identities=13% Similarity=0.027 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHH----------------HHHHHHHcCCHHH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSN----------------RAATRISLGRMRE 510 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~----------------lA~~y~~lg~~ee 510 (954)
.++.+..+|..++..|+|++|+.+|++++.++|++. .+|+. +|.+|..+|++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 72 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT----------EMYYWTNVDKNSEISSKLATELALAYKKNRNYDK 72 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH----------HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh----------HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHH
Confidence 356789999999999999999999999999999986 78888 9999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002199 511 ALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLL 590 (954)
Q Consensus 511 Al~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll 590 (954)
|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++ ...++.++..++
T Consensus 73 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-------------------~~a~~~lg~~~~ 133 (208)
T 3urz_A 73 AYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-------------------LAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------------HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 455677777776
Q ss_pred HhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 591 EQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 591 ~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
..+... ...++..+.+++...| ....++.+|.++..+|+|++|+..|++++++.|+.
T Consensus 134 ~~~~~~-~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQE-KKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHH-HHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHH-HHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 655432 1245666666654333 23467788999999999999999999999999965
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.3e-16 Score=155.55 Aligned_cols=171 Identities=17% Similarity=0.145 Sum_probs=156.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 615 SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLE 694 (954)
Q Consensus 615 ~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal 694 (954)
...++..+|.++...|++++|+..+++++...|.+.. .+..+|.++...|++++|+.++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~A~~~~~~~~ 69 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVD-----------------VALHLGIAYVKTGAVDRGTELLERSL 69 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567888999999999999999999999999886633 67889999999999999999999999
Q ss_pred hhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcC
Q 002199 695 QVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQ 774 (954)
Q Consensus 695 ~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~ 774 (954)
...|.... .+..+|.++...|++++|+.+|++++... |....++..+|.++..+|+
T Consensus 70 ~~~~~~~~--------------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~ 125 (186)
T 3as5_A 70 ADAPDNVK--------------------VATVLGLTYVQVQKYDLAVPLLIKVAEAN----PINFNVRFRLGVALDNLGR 125 (186)
T ss_dssp HHCTTCHH--------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTC
T ss_pred hcCCCCHH--------------------HHHHHHHHHHHhcCHHHHHHHHHHHHhcC----cHhHHHHHHHHHHHHHcCc
Confidence 99876533 45678999999999999999999999998 6778899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 775 IADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 775 ~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
+++|+..+++++.+.|.++.++..+|.++..+|++++|+.+|++++++.|++
T Consensus 126 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 126 FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999999999999999997764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-17 Score=200.35 Aligned_cols=188 Identities=9% Similarity=-0.051 Sum_probs=167.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGI--------NSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDC 515 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL--------~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~ 515 (954)
.|....+++..| +..|++++|+..|++++ +.+|.+. .+++.+|.+|+.+|++++|+..|
T Consensus 390 ~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~----------~~~~~~a~~~~~~g~~~~A~~~~ 456 (681)
T 2pzi_A 390 DPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESV----------ELPLMEVRALLDLGDVAKATRKL 456 (681)
T ss_dssp CTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCS----------HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccch----------hHHHHHHHHHHhcCCHHHHHHHH
Confidence 344555566655 88999999999999999 8999987 89999999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCh
Q 002199 516 MMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTS 595 (954)
Q Consensus 516 ~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~ 595 (954)
+++++++|++..+|+.+|.+|..+|++++|+..|+++++++|++ ...++.++..+...|++
T Consensus 457 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-------------------~~~~~~lg~~~~~~g~~ 517 (681)
T 2pzi_A 457 DDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE-------------------LAPKLALAATAELAGNT 517 (681)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-------------------SHHHHHHHHHHHHHTCC
T ss_pred HHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------------------hHHHHHHHHHHHHcCCh
Confidence 99999999999999999999999999999999999999999986 56678899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHH
Q 002199 596 EAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISK 675 (954)
Q Consensus 596 ~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~ 675 (954)
+ + +..|++++.++|.++.+++.+|.+|..+|++++|+..|+++++++|.+.. +|+.+|.
T Consensus 518 ~---~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~-----------------a~~~~~~ 576 (681)
T 2pzi_A 518 D---E-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTT-----------------ARLTSAV 576 (681)
T ss_dssp C---T-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHH-----------------HHHHHHH
T ss_pred H---H-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHH-----------------HHHHHHH
Confidence 9 7 88999999999999999999999999999999999999999999998755 7888999
Q ss_pred HHHHcCCHH
Q 002199 676 SYFCIGKLE 684 (954)
Q Consensus 676 ~y~~lG~~e 684 (954)
+|+..++++
T Consensus 577 ~~~~~~~~~ 585 (681)
T 2pzi_A 577 TLLSGRSTS 585 (681)
T ss_dssp HTC------
T ss_pred HHHccCCCC
Confidence 988766633
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-16 Score=154.26 Aligned_cols=173 Identities=13% Similarity=0.035 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF 525 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~ 525 (954)
..+..+..+|..++..|++++|+.+|++++...|.+. .++..+|.++...|++++|+..+++++++.|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 75 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV----------DVALHLGIAYVKTGAVDRGTELLERSLADAPDN 75 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 4577899999999999999999999999999999886 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 002199 526 LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERI 605 (954)
Q Consensus 526 ~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l 605 (954)
..++..+|.++...|++++|+..|++++...|.+ ...++.++..+...|+++ +|+..+
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------------------~~~~~~~a~~~~~~~~~~---~A~~~~ 133 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-------------------FNVRFRLGVALDNLGRFD---EAIDSF 133 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHTTCHH---HHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-------------------HHHHHHHHHHHHHcCcHH---HHHHHH
Confidence 9999999999999999999999999999998865 345677888899999999 889999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhh
Q 002199 606 NEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNF 650 (954)
Q Consensus 606 ~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~ 650 (954)
.+++...|.++.++..+|.++...|++++|+..+++++++.|.+.
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 999999999999999999999999999999999999999998764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.4e-15 Score=184.90 Aligned_cols=299 Identities=15% Similarity=0.127 Sum_probs=208.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-Cc---ccccCCc--------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 454 RGNQAYKNNNLTEAEDFYTQGINSVPL-SE---TAGCCIK--------PLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 454 ~G~~~~~~g~y~eAi~~y~kAL~~~P~-~~---~~~~~~~--------~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
.|..+...|.|++|..+|+++-...-. +. ..+.+.+ ....+|+++|.++...|++++|+..|.+|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 488999999999999888775311100 00 0000000 12478999999999999999999999886
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHH
Q 002199 522 DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSA 601 (954)
Q Consensus 522 ~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eA 601 (954)
+++.+|.++|.++..+|+|++|+++|..+.+..++...+. .++..|.+.+++++
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt--------------------~LafaYAKl~rlee---- 1185 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET--------------------ELIFALAKTNRLAE---- 1185 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccH--------------------HHHHHHHhhcCHHH----
Confidence 7888999999999999999999999999988765432111 24444445555542
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcC
Q 002199 602 LERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIG 681 (954)
Q Consensus 602 L~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG 681 (954)
++.| + ..++. ..+..+|..+...|+|++|+.+|.++- .|..++.+|..+|
T Consensus 1186 le~f---I-~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA~-------------------------ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1186 LEEF---I-NGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNVS-------------------------NFGRLASTLVHLG 1235 (1630)
T ss_pred HHHH---H-hCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhhh-------------------------HHHHHHHHHHHhC
Confidence 2222 1 13333 445568888888888888888887751 3566788888888
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhhHHHHHH-----HHHHH-----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 682 KLEVALDLLQKLEQVGSISDRYGSEILESS-----MSLAG-----TVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 682 ~~eeAl~~l~kal~l~p~~~~~~~~~l~~~-----~~l~~-----~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~ 751 (954)
++++|++.++++... ..+..+...+ ..+.. .......+..++..|...|.|++||.+|+++|.++
T Consensus 1236 e~q~AIEaarKA~n~-----~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1236 EYQAAVDGARKANST-----RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred CHHHHHHHHHHhCCH-----HHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 888888888877332 1111000000 01111 11122345567888999999999999999999998
Q ss_pred cCCchhhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002199 752 IESRPFAAICFCNRAAALQA--LGQIADAIADCSLAMALDE-----NYTKAVSRRAALHEMIRDYTQAASDLQRLV 820 (954)
Q Consensus 752 ~~~~p~~a~~~~~lA~~y~~--lg~~eeAi~~~ekAL~ldP-----~~~~al~~lA~ly~~lg~~eeAi~~~ekAL 820 (954)
+.+...+..+|.+|.+ -++..++++.|...+.+.| ..+..|..+..+|.+-|+|+.|+..+-...
T Consensus 1311 ----raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~ 1382 (1630)
T 1xi4_A 1311 ----RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 1382 (1630)
T ss_pred ----hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhcc
Confidence 7888889888888875 4588999999999888877 788899999999999999999997655443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-15 Score=164.20 Aligned_cols=243 Identities=9% Similarity=0.004 Sum_probs=161.1
Q ss_pred HHHHHcCCH-HHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCcHHHHHHH
Q 002199 456 NQAYKNNNL-TEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG--RMREALEDCMMAATVDPNFLKVYMRA 532 (954)
Q Consensus 456 ~~~~~~g~y-~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg--~~eeAl~~~~kALel~P~~~~a~~~L 532 (954)
...++.|.+ ++|+.++.++|.++|.+. .+|+.++.++..++ ++++++..+.++|.++|++..+|..+
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~nP~~~----------taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R 109 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINELASHY----------TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYR 109 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCcHHH----------HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 344556666 589999999999999998 99999999999999 99999999999999999999999999
Q ss_pred HHHH----HHc---CCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 002199 533 AKCH----LVL---GEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERI 605 (954)
Q Consensus 533 A~iy----~~l---G~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l 605 (954)
+.++ ..+ +++++++..+.++++.+|.
T Consensus 110 ~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk----------------------------------------------- 142 (306)
T 3dra_A 110 QLIIGQIMELNNNDFDPYREFDILEAMLSSDPK----------------------------------------------- 142 (306)
T ss_dssp HHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-----------------------------------------------
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-----------------------------------------------
Confidence 9998 666 5666666666666665554
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHH--HHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC-
Q 002199 606 NEALSISSCSEKLLEMKADALYMLRKYE--EAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGK- 682 (954)
Q Consensus 606 ~kaL~~~P~~~~~~~~lA~~~~~lg~~e--eAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~- 682 (954)
+..+|..++.++..++.++ ++++.+.++++.+|.+.. +|..++.++...+.
T Consensus 143 ---------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s-----------------AW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 143 ---------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS-----------------AWSHRFFLLFSKKHL 196 (306)
T ss_dssp ---------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHSSGGG
T ss_pred ---------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHhcccc
Confidence 4444444455555555444 555555555555555544 44444555554444
Q ss_pred -----HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhccCCch
Q 002199 683 -----LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTE-AVEHYTVALSTNIESRP 756 (954)
Q Consensus 683 -----~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~ee-Ai~~y~kAL~l~~~~~p 756 (954)
++++++++.+++.++|.+.. +|..++.++...|+... +..++.+++.+.. ..+
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~p~n~S--------------------aW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~~ 255 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKCPQNPS--------------------TWNYLLGIHERFDRSITQLEEFSLQFVDLEK-DQV 255 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCHH--------------------HHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG-TEE
T ss_pred chhhhHHHHHHHHHHHHHhCCCCcc--------------------HHHHHHHHHHhcCCChHHHHHHHHHHHhccC-CCC
Confidence 55555555555555555533 34444445555554333 3334444444431 125
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCCHHHHHHHHHH
Q 002199 757 FAAICFCNRAAALQALGQIADAIADCSLAMA-LDENYTKAVSRRAAL 802 (954)
Q Consensus 757 ~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~-ldP~~~~al~~lA~l 802 (954)
....++..+|.+|.++|+.++|++.|+.+++ +||-....|..++..
T Consensus 256 ~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 256 TSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 5666777777777777777777777777775 677777776666543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-15 Score=157.93 Aligned_cols=191 Identities=9% Similarity=-0.009 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~ 527 (954)
++.++.+|..++..|+|++|+..|++++...|.++ ....+++.+|.+|+.+|++++|+..|+++++++|++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 76 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP-------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 76 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 56789999999999999999999999999999864 12368999999999999999999999999999998754
Q ss_pred ---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 002199 528 ---VYMRAAKCHLV------------------LGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCS 586 (954)
Q Consensus 528 ---a~~~LA~iy~~------------------lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a 586 (954)
+++.+|.++.. +|++++|+..|+++++..|+..........+...... .....+.++
T Consensus 77 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~--~~~~~~~~a 154 (225)
T 2yhc_A 77 IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR--LAKYEYSVA 154 (225)
T ss_dssp HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 89999999987 5799999999999999999875443222221111111 123346778
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhh
Q 002199 587 GKLLEQKTSEAASSALERINEALSISSCSE---KLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNF 650 (954)
Q Consensus 587 ~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~---~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~ 650 (954)
..++..|++. +|+..|++++...|.++ .++..+|.++..+|++++|+..++.++...|++.
T Consensus 155 ~~~~~~~~~~---~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 155 EYYTERGAWV---AVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHTCHH---HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHcCcHH---HHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 8899999999 89999999999999886 6899999999999999999999999988888664
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-15 Score=165.29 Aligned_cols=231 Identities=9% Similarity=0.005 Sum_probs=197.8
Q ss_pred HHHcCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHh
Q 002199 502 RISLGRM-REALEDCMMAATVDPNFLKVYMRAAKCHLVLG--EIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQK 578 (954)
Q Consensus 502 y~~lg~~-eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG--~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~ 578 (954)
.+..|.+ ++|+..+.++|.++|++..+|..++.++..++ ++++++..+..+|.++|.+
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~------------------- 102 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN------------------- 102 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC-------------------
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc-------------------
Confidence 3444444 68999999999999999999999999999999 9999999999999999976
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----HHc---cCHHHHHHHHHHhchhhhhhhh
Q 002199 579 VTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADAL----YML---RKYEEAIQLCEHTLPVAEKNFA 651 (954)
Q Consensus 579 ~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~----~~l---g~~eeAi~~~ekaL~l~p~~~~ 651 (954)
...| ..++.++ ..+ +++++++.++.+++..+|+++.
T Consensus 103 y~aW-------------------------------------~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~ 145 (306)
T 3dra_A 103 YQIW-------------------------------------NYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHH 145 (306)
T ss_dssp CHHH-------------------------------------HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHH
T ss_pred HHHH-------------------------------------HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHH
Confidence 2222 2222222 333 6789999999999999999976
Q ss_pred hhhhccCcchhhHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 652 SVLADNGSVTYSLARLWRWRLISKSYFCIG--KLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGN 729 (954)
Q Consensus 652 ~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG--~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~ 729 (954)
+|..++.++..++ +..+++.++.+++..+|.+.. +|..++.
T Consensus 146 -----------------aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s--------------------AW~~R~~ 188 (306)
T 3dra_A 146 -----------------VWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS--------------------AWSHRFF 188 (306)
T ss_dssp -----------------HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH--------------------HHHHHHH
T ss_pred -----------------HHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH--------------------HHHHHHH
Confidence 7888888888777 488999999999999999999 5666778
Q ss_pred HHHHcCC------HHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHhC---CCCHHHHHHH
Q 002199 730 EAFKSGR------YTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIAD-AIADCSLAMALD---ENYTKAVSRR 799 (954)
Q Consensus 730 ~~~~~g~------~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~ee-Ai~~~ekAL~ld---P~~~~al~~l 799 (954)
++...+. +++++++++++|.++ |.+..+|++++.++...|+..+ ...++.+++.++ |..+.++..+
T Consensus 189 ll~~l~~~~~~~~~~eEl~~~~~aI~~~----p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l 264 (306)
T 3dra_A 189 LLFSKKHLATDNTIDEELNYVKDKIVKC----PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETL 264 (306)
T ss_dssp HHHSSGGGCCHHHHHHHHHHHHHHHHHC----SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHH
T ss_pred HHHhccccchhhhHHHHHHHHHHHHHhC----CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence 8888787 999999999999999 8889999999999999998555 556888888877 8899999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHH-HhhhhHHH
Q 002199 800 AALHEMIRDYTQAASDLQRLVS-ILENQSAE 829 (954)
Q Consensus 800 A~ly~~lg~~eeAi~~~ekAL~-l~p~~~~~ 829 (954)
|.+|.++|+.++|+++|+.+.+ ++|-....
T Consensus 265 a~~~~~~~~~~~A~~~~~~l~~~~Dpir~~y 295 (306)
T 3dra_A 265 AKIYTQQKKYNESRTVYDLLKSKYNPIRSNF 295 (306)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHccCCHHHHHHHHHHHHhccChHHHHH
Confidence 9999999999999999999997 89877653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=156.57 Aligned_cols=147 Identities=14% Similarity=0.035 Sum_probs=128.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002199 621 MKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSIS 700 (954)
Q Consensus 621 ~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~ 700 (954)
.||.++...|++++|+..+++++...|.+.. .++.+|.+|+..|++++|+.+|+++++++|.+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~-----------------~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~ 64 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSI-----------------KGFYFAKLYYEAKEYDLAKKYICTYINVQERD 64 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHT-----------------THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 4688888899999999999999999987754 67889999999999999999999999999987
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHH
Q 002199 701 DRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIA 780 (954)
Q Consensus 701 ~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~ 780 (954)
.. ++..+|.++...|++++|+.+|+++++++ |.++.+++++|.+|..+|++++|+.
T Consensus 65 ~~--------------------a~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 65 PK--------------------AHRFLGLLYELEENTDKAVECYRRSVELN----PTQKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HH--------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred HH--------------------HHHHHHHHHHHcCchHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHHHH
Confidence 54 67789999999999999999999999999 7888999999999999999988776
Q ss_pred H-HHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 002199 781 D-CSLAMALDENYTKAVSRRAALHEMIRD 808 (954)
Q Consensus 781 ~-~ekAL~ldP~~~~al~~lA~ly~~lg~ 808 (954)
. +++|++++|+++.++..++.++...|+
T Consensus 121 ~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 121 YWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 5 589999999999999999999988775
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.2e-16 Score=147.49 Aligned_cols=108 Identities=28% Similarity=0.442 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..|+.+++++.+|+.+++.|+|++|+.+|+++|+++|.+. .+|+++|.+|+.+|++++|+.+|+++|+++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 77 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA----------ILYSNRAACLTKLMEFQRALDDCDTCIRLD 77 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------HHHHHHhhHHHhhccHHHHHHHHHHHHHhh
Confidence 4689999999999999999999999999999999999997 999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
|+++.+|+.+|.+|..+|++++|+..|+++++++|++.
T Consensus 78 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 78 SKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCH
Confidence 99999999999999999999999999999999999873
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-15 Score=156.88 Aligned_cols=207 Identities=12% Similarity=-0.053 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHH
Q 002199 492 VLCYSNRAATRISLGRMREALEDCMMAATVDPNF---LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE 568 (954)
Q Consensus 492 a~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~---~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~e 568 (954)
+..++.+|..++..|+|++|+..|++++...|.. ..+++.+|.+|..+|++++|+..|+++++..|++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~------- 76 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN------- 76 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-------
Confidence 3789999999999999999999999999998876 478999999999999999999999999998886421
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhh
Q 002199 569 AADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEK 648 (954)
Q Consensus 569 a~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~ 648 (954)
.+.+++.+|.++..++.. + +
T Consensus 77 ----------------------------------------------~~~a~~~~g~~~~~~~~~--~---~--------- 96 (225)
T 2yhc_A 77 ----------------------------------------------IDYVMYMRGLTNMALDDS--A---L--------- 96 (225)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHC-----------------
T ss_pred ----------------------------------------------HHHHHHHHHHHHHhhhhh--h---h---------
Confidence 112344444444443321 0 0
Q ss_pred hhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 649 NFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAG 728 (954)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG 728 (954)
..+..++.++...|++++|+..|++++...|.+...... ...++
T Consensus 97 -------------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a-----------------~~~l~ 140 (225)
T 2yhc_A 97 -------------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDA-----------------TKRLV 140 (225)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHH-----------------HHHHH
T ss_pred -------------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHH-----------------HHHHH
Confidence 012234555555666677777777777766665441100 00000
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH
Q 002199 729 NEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYT---KAVSRRAALHEM 805 (954)
Q Consensus 729 ~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~---~al~~lA~ly~~ 805 (954)
.+. .........+|.+|...|++++|+..|+++++..|+++ .+++.+|.+|..
T Consensus 141 ~~~------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~ 196 (225)
T 2yhc_A 141 FLK------------------------DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQ 196 (225)
T ss_dssp HHH------------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred HHH------------------------HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHH
Confidence 000 01112234566677777777777777777777777664 567777777777
Q ss_pred hcCHHHHHHHHHHHHHHhhh
Q 002199 806 IRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 806 lg~~eeAi~~~ekAL~l~p~ 825 (954)
+|++++|+..+++++...|+
T Consensus 197 ~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 197 MQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp TTCHHHHHHHHHHHHHCCSC
T ss_pred cCCcHHHHHHHHHHHhhCCC
Confidence 77777777777766666443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-15 Score=157.41 Aligned_cols=186 Identities=12% Similarity=0.001 Sum_probs=143.1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 615 SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLE 694 (954)
Q Consensus 615 ~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal 694 (954)
++..++.+|..++..|++++|+..|++++.++|++........... ........++.+|.+|...|++++|+..|++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDK-NSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCT-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcc-hhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4556777888888888888888888888888887754110000000 000000012339999999999999999999999
Q ss_pred hhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcC
Q 002199 695 QVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQ 774 (954)
Q Consensus 695 ~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~ 774 (954)
+++|.+.. .+..+|.+++..|++++|+.+|++++.++ |.++.+++++|.+|..+++
T Consensus 82 ~~~p~~~~--------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 82 QKAPNNVD--------------------CLEACAEMQVCRGQEKDALRMYEKILQLE----ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHCTTCHH--------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCCHH--------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHHhH
Confidence 99998744 67789999999999999999999999999 7889999999999987764
Q ss_pred --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 775 --IADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 775 --~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
...++..+.+++...| ...+++.+|.++..+|+|++|+.+|++++++.|+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 138 QEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 5667778888765433 23478899999999999999999999999997753
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-14 Score=161.30 Aligned_cols=260 Identities=13% Similarity=-0.025 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHH
Q 002199 492 VLCYSNRAATRISLGRMREALEDCMMAATVDPNFL-----KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRIT 566 (954)
Q Consensus 492 a~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~-----~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~ 566 (954)
..++..+|.+++..|++++|+..+++++...|... .++..+|.++...|++++|+..+++++.+.|...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------ 87 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD------ 87 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC------
Confidence 57888999999999999999999999999887542 3678899999999999999999999998755320
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhh
Q 002199 567 IEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVA 646 (954)
Q Consensus 567 ~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~ 646 (954)
... ....++..+|.++...|++++|+..+++++.+.
T Consensus 88 ---------------------------~~~-----------------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 123 (373)
T 1hz4_A 88 ---------------------------VWH-----------------YALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 123 (373)
T ss_dssp ---------------------------CHH-----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------------------------cHH-----------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 000 012356788999999999999999999999987
Q ss_pred hhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002199 647 EKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKS 726 (954)
Q Consensus 647 p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 726 (954)
+..... ......+.+..+|.+|...|++++|+.++++++.+.+...... .+..+..
T Consensus 124 ~~~~~~---------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------~~~~~~~ 179 (373)
T 1hz4_A 124 NEQHLE---------QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ---------------QLQCLAM 179 (373)
T ss_dssp HHTTCT---------TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG---------------GHHHHHH
T ss_pred HHhccc---------cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH---------------HHHHHHH
Confidence 643210 0011223677899999999999999999999999877643211 1235667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhccCCc-hhhHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHH
Q 002199 727 AGNEAFKSGRYTEAVEHYTVALSTNIESR-PFAAIC--FCNRAAALQALGQIADAIADCSLAMALDENY----TKAVSRR 799 (954)
Q Consensus 727 lG~~~~~~g~~eeAi~~y~kAL~l~~~~~-p~~a~~--~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~----~~al~~l 799 (954)
+|.++...|++++|+.++++++.+.+... +..... ...++.++...|++++|+..+++++...|.. ..++..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 89999999999999999999998743211 111122 2245566889999999999999999877653 3467889
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 800 AALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 800 A~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
|.++...|++++|+..+++++.+.+.
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~ 285 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARS 285 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998664
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=6.9e-16 Score=164.09 Aligned_cols=175 Identities=15% Similarity=0.041 Sum_probs=139.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCcHHHHH
Q 002199 459 YKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV--------DPNFLKVYM 530 (954)
Q Consensus 459 ~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel--------~P~~~~a~~ 530 (954)
...|++++|+.+|++|+++..... +......+.++..+|.+|..+|++++|+..|++++++ .|....++.
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTS--GHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHH--CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 346788888888888888542110 0001234689999999999999999999999999988 466788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHh
Q 002199 531 RAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALS 610 (954)
Q Consensus 531 ~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~ 610 (954)
.+|.+|..+|++++|+.+|++++.+....... ........+..++..+...|+++ +|+..+.+++.
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~~~la~~~~~~g~~~---~A~~~~~~al~ 155 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-----------FHPDVAKQLNNLALLCQNQGKAE---EVEYYYRRALE 155 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT-----------TCHHHHHHHHHHHHHHHTTTCHH---HHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC-----------CChHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHH
Confidence 99999999999999999999999873211000 00112556788899999999999 78888888888
Q ss_pred c--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 611 I--------SSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 611 ~--------~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
+ .|....++..+|.++..+|++++|+.++++++.+.+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 156 IYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 7 67778899999999999999999999999999987654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=9e-17 Score=157.99 Aligned_cols=147 Identities=9% Similarity=-0.050 Sum_probs=131.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 002199 453 LRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRA 532 (954)
Q Consensus 453 ~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~L 532 (954)
.+|..+..+|++++|+..|++++...|.++ ..++.+|.+|+.+|+|++|++.|+++|+++|+++.+|+.+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~----------~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 71 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKS----------IKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFL 71 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHH----------TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 368888899999999999999999999876 7899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHH-HHHHHhc
Q 002199 533 AKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALER-INEALSI 611 (954)
Q Consensus 533 A~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~-l~kaL~~ 611 (954)
|.+|..+|++++|+..|+++++++|.+ ...++.++..+...++++ +|+.. +++++++
T Consensus 72 g~~~~~~~~~~~A~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~~~~~---~aa~~~~~~al~l 129 (150)
T 4ga2_A 72 GLLYELEENTDKAVECYRRSVELNPTQ-------------------KDLVLKIAELLCKNDVTD---GRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHHCSSS---SHHHHHHHHHHHH
T ss_pred HHHHHHcCchHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHcCChH---HHHHHHHHHHHHh
Confidence 999999999999999999999999986 566888999999999987 45554 5899999
Q ss_pred CCCCHHHHHHHHHHHHHccC
Q 002199 612 SSCSEKLLEMKADALYMLRK 631 (954)
Q Consensus 612 ~P~~~~~~~~lA~~~~~lg~ 631 (954)
+|.++.++..++.++...|+
T Consensus 130 ~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 130 FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp STTCHHHHHHHHHHHHTCCC
T ss_pred CcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999988875
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-14 Score=181.33 Aligned_cols=313 Identities=10% Similarity=-0.011 Sum_probs=168.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002199 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYM 530 (954)
Q Consensus 451 l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~ 530 (954)
.-.....|...|.+.+|+++|++++ +.|..-. .......+..+..+....++..+.+..+.+.+ .-
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs----~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d---------~~ 1053 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIV-LDNSVFS----EHRNLQNLLILTAIKADRTRVMEYINRLDNYD---------AP 1053 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHH-cCCCccc----ccHHHHHHHHHHHHHhChhhHHHHHHHhhhcc---------HH
Confidence 3445667789999999999999999 5555110 01112333444455554555555555444332 23
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhchhh--hh-hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 002199 531 RAAKCHLVLGEIENAQHYYHKLLNSAAAV--CL-DRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINE 607 (954)
Q Consensus 531 ~LA~iy~~lG~~eeAl~~yekaL~l~P~~--~~-~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~k 607 (954)
.+|.++..+|.|++|...|+++-...-.. .. ......++.....+......|+.+|..+...|+++ +|+..|.+
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~k---EAIdsYiK 1130 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVK---EAIDSYIK 1130 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHH---HHHHHHHh
Confidence 37899999999999999999974221100 00 01112222222233333455666666666666666 45555544
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhh-----hhccCcchh-----hHHHHHHHHHHHHHH
Q 002199 608 ALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASV-----LADNGSVTY-----SLARLWRWRLISKSY 677 (954)
Q Consensus 608 aL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~-----~~~~~~~~~-----~~~~l~a~~~Lg~~y 677 (954)
+ +++..+..+|.++..+|+|++|+++|..+++..+...... ......... .......|..+|..+
T Consensus 1131 A-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1131 A-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRC 1205 (1630)
T ss_pred c-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3 5566666666666666666666666666665543320000 000000000 000001233344444
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchh
Q 002199 678 FCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPF 757 (954)
Q Consensus 678 ~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~ 757 (954)
...|+|++|+.+|.++ ..|..+|.+|.+.|++++|++.+++|.
T Consensus 1206 e~eg~YeeA~~~Y~kA----------------------------~ny~rLA~tLvkLge~q~AIEaarKA~--------- 1248 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNV----------------------------SNFGRLASTLVHLGEYQAAVDGARKAN--------- 1248 (1630)
T ss_pred HhcCCHHHHHHHHHhh----------------------------hHHHHHHHHHHHhCCHHHHHHHHHHhC---------
Confidence 4444444444444443 123334555555555555555555541
Q ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 758 AAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 758 ~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
+..+|...+.++...|+|..|..+... +.. +++.+..++..|...|.|++|+..|+++|.+.+..
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAH 1313 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH
Confidence 124455555555555555555554432 322 34455688889999999999999999999996544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=167.02 Aligned_cols=243 Identities=15% Similarity=0.032 Sum_probs=182.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002199 460 KNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRIS-LGRMREALEDCMMAATVDPNFLKVYMRAAKCHLV 538 (954)
Q Consensus 460 ~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~-lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~ 538 (954)
..|+|.+|+.+++++.+..+... +. .+++++|+..|.++ |.+|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~--------------------~~~~~~~~~A~~~~~~a--------------~~~~~~ 48 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSF--------------------MKWKPDYDSAASEYAKA--------------AVAFKN 48 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCS--------------------SSCSCCHHHHHHHHHHH--------------HHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccc--------------------cCCCCCHHHHHHHHHHH--------------HHHHHH
Confidence 46789999999999998876421 11 48899999988876 678889
Q ss_pred cCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHH
Q 002199 539 LGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKL 618 (954)
Q Consensus 539 lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~ 618 (954)
+|++++|+.+|.+++.+.+.. ++.. . ...+
T Consensus 49 ~g~~~~A~~~~~~al~~~~~~---------------------------------~~~~---~--------------~a~~ 78 (307)
T 2ifu_A 49 AKQLEQAKDAYLQEAEAHANN---------------------------------RSLF---H--------------AAKA 78 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT---------------------------------TCHH---H--------------HHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHc---------------------------------CCHH---H--------------HHHH
Confidence 999999999999998864421 1111 1 1235
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002199 619 LEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGS 698 (954)
Q Consensus 619 ~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p 698 (954)
+..+|.+|..+|++++|+.+|++++.+.+.... ......++..+|.+|.. |++++|+.+|++++.+.+
T Consensus 79 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-----------~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~ 146 (307)
T 2ifu_A 79 FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT-----------PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFE 146 (307)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-----------HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999988754311 11122367889999998 999999999999998755
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCc--hhhHHHHHHHHHHHHHhcCHH
Q 002199 699 ISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESR--PFAAICFCNRAAALQALGQIA 776 (954)
Q Consensus 699 ~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~--p~~a~~~~~lA~~y~~lg~~e 776 (954)
.... .......+.++|.+|...|+|++|+.+|++++.+.+... +....++.++|.++..+|+++
T Consensus 147 ~~~~--------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 212 (307)
T 2ifu_A 147 NEER--------------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYV 212 (307)
T ss_dssp HTTC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hCCC--------------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHH
Confidence 3322 112345678899999999999999999999999875332 234568899999999999999
Q ss_pred HHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHhcCHHHHHH
Q 002199 777 DAIADCSLAMALDENYTK-----AVSRRAALHEMIRDYTQAAS 814 (954)
Q Consensus 777 eAi~~~ekAL~ldP~~~~-----al~~lA~ly~~lg~~eeAi~ 814 (954)
+|+.+|++++ ++|.+.. .+..++.++ ..++.+.+..
T Consensus 213 ~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 213 AAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999999 9997643 334444444 4566544433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=161.25 Aligned_cols=247 Identities=14% Similarity=0.010 Sum_probs=165.3
Q ss_pred HcCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHH
Q 002199 504 SLGRMREALEDCMMAATV--------DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQK 575 (954)
Q Consensus 504 ~lg~~eeAl~~~~kALel--------~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~ 575 (954)
..|++++|+..|++++++ .|..+.++..+|.+|..+|++++|+.+|++++.+...... -..
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~ 81 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLG-----------KDH 81 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----------TTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC-----------Ccc
Confidence 457777788888777774 3667889999999999999999999999999987421000 000
Q ss_pred HHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhh
Q 002199 576 AQKVTEYINCSGKLLEQKTSEAASSALERINEALSI--------SSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAE 647 (954)
Q Consensus 576 ~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~--------~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p 647 (954)
......+..++..+...|+++ +|+..+.+++.+ .|....++..+|.++..+|++++|+.++++++.+..
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 158 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYK---EAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA 158 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHH---HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 112456788899999999999 788888888877 466788999999999999999999999999999832
Q ss_pred hhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002199 648 KNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSA 727 (954)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~l 727 (954)
.... ........++..+|.+|..+|++++|+.+|++++.+.+....... .......+..+
T Consensus 159 ~~~~---------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~~ 218 (283)
T 3edt_B 159 TRLG---------PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSV-----------NGDNKPIWMHA 218 (283)
T ss_dssp HHSC---------TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSC-----------CSSCCCHHHHH
T ss_pred HhcC---------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCc-----------chhHHHHHHHH
Confidence 2100 000111237889999999999999999999999986321100000 00000112223
Q ss_pred HHHHHHcCC------HHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 728 GNEAFKSGR------YTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 728 G~~~~~~g~------~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
+..+...+. +..++.++..+. ...|....++..+|.+|..+|++++|+.+|++++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 219 EEREESKDKRRDSAPYGEYGSWYKACK----VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHTTCCCCC------------CCC----CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333333232 222322222222 223677777888888888888888888888887765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.63 E-value=4e-15 Score=163.86 Aligned_cols=176 Identities=13% Similarity=0.033 Sum_probs=145.3
Q ss_pred HHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 002199 623 ADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 623 A~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~ 702 (954)
|.+|...|++++|+..|.+++.+.+.... .......+..+|.+|..+|++++|+.+|++++.+.+....
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~ 111 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRS-----------LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT 111 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 67889999999999999999999875421 1122346788999999999999999999999987543222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC--chhhHHHHHHHHHHHHHhcCHHHHHH
Q 002199 703 YGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES--RPFAAICFCNRAAALQALGQIADAIA 780 (954)
Q Consensus 703 ~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~--~p~~a~~~~~lA~~y~~lg~~eeAi~ 780 (954)
....+..+.++|.+|.. |++++|+.+|++|+.+.+.. ......++.++|.+|..+|+|++|+.
T Consensus 112 --------------~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 112 --------------PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp --------------HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 12334577889999998 99999999999999987532 23447899999999999999999999
Q ss_pred HHHHHHHhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 781 DCSLAMALDENY------TKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 781 ~~ekAL~ldP~~------~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
+|++++.+.|.. ..+++.+|.++..+|++++|+.+|++++ +.|.
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 999999986543 3578889999999999999999999999 8664
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.3e-15 Score=139.65 Aligned_cols=106 Identities=30% Similarity=0.501 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSR 798 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~ 798 (954)
..+..+.++|..+++.|+|++|+.+|++++.++ |.++.+|+++|.+|..+|++++|+..|+++|+++|+++.+|+.
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD----PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 345678889999999999999999999999999 7889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 799 RAALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 799 lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
+|.+|..+|++++|+.+|+++++++|++.+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEE 116 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHH
Confidence 999999999999999999999999665544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-13 Score=151.17 Aligned_cols=164 Identities=10% Similarity=0.031 Sum_probs=146.7
Q ss_pred HHHHHcCCHH-HHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCC
Q 002199 456 NQAYKNNNLT-EAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGR----------MREALEDCMMAATVDPN 524 (954)
Q Consensus 456 ~~~~~~g~y~-eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~----------~eeAl~~~~kALel~P~ 524 (954)
....+.|+|+ +|+.++.++|.++|++. .+|+.++.++..++. +++++..+..+|..+|+
T Consensus 37 ~~~~~~~e~s~eaL~~t~~~L~~nP~~y----------taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK 106 (331)
T 3dss_A 37 FQKRQAGELDESVLELTSQILGANPDFA----------TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK 106 (331)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHTTCTTCH----------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhH----------HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC
Confidence 3445678887 79999999999999998 999999999998887 78999999999999999
Q ss_pred cHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCh-HHHHHH
Q 002199 525 FLKVYMRAAKCHLVLGE--IENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTS-EAASSA 601 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~--~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~-~~a~eA 601 (954)
+..+|..++.++..+++ +++++.++.++++++|.+ ...|..++..+...+.+ + ++
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN-------------------y~AW~~R~~vl~~l~~~~~---ee 164 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-------------------FHCWDYRRFVAAQAAVAPA---EE 164 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHTTCCHH---HH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHhCcCHH---HH
Confidence 99999999999999995 999999999999999987 45566667666666663 5 79
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHc--------------cCHHHHHHHHHHhchhhhhhhh
Q 002199 602 LERINEALSISSCSEKLLEMKADALYML--------------RKYEEAIQLCEHTLPVAEKNFA 651 (954)
Q Consensus 602 L~~l~kaL~~~P~~~~~~~~lA~~~~~l--------------g~~eeAi~~~ekaL~l~p~~~~ 651 (954)
++++.+++..+|.+..+|..++.++..+ +.++++++++.++|.++|.+..
T Consensus 165 l~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~S 228 (331)
T 3dss_A 165 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS 228 (331)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999988 5699999999999999999865
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.7e-15 Score=149.89 Aligned_cols=168 Identities=11% Similarity=0.069 Sum_probs=140.3
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002199 613 SCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQK 692 (954)
Q Consensus 613 P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~k 692 (954)
|.....++.+|.+++..|++++|+..|+++++.+|++.. +++.+|.+|...|++++|+..|++
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~-----------------a~~~la~~~~~~g~~~~A~~~~~~ 65 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD-----------------VKLAKADCLLETKQFELAQELLAT 65 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH-----------------HHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH-----------------HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334456788999999999999999999999999998855 788999999999999999999999
Q ss_pred HHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH
Q 002199 693 LEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE-AFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA 771 (954)
Q Consensus 693 al~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~-~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~ 771 (954)
++...| ++... ...+.+ +...+...+|+..|++++.++ |.++.+++++|.++..
T Consensus 66 a~~~~p-~~~~~--------------------~~~~~~~~~~~~~~~~a~~~~~~al~~~----P~~~~~~~~la~~~~~ 120 (176)
T 2r5s_A 66 IPLEYQ-DNSYK--------------------SLIAKLELHQQAAESPELKRLEQELAAN----PDNFELACELAVQYNQ 120 (176)
T ss_dssp CCGGGC-CHHHH--------------------HHHHHHHHHHHHTSCHHHHHHHHHHHHS----TTCHHHHHHHHHHHHH
T ss_pred hhhccC-ChHHH--------------------HHHHHHHHHhhcccchHHHHHHHHHHhC----CCCHHHHHHHHHHHHH
Confidence 999888 53210 001111 112223346899999999999 7889999999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 772 LGQIADAIADCSLAMALDENY--TKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 772 lg~~eeAi~~~ekAL~ldP~~--~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
+|++++|+..|+++++++|+. ..++..+|.++..+|++++|+..|+++|..
T Consensus 121 ~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 121 VGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp TTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 999999999999999999986 669999999999999999999999999864
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-13 Score=150.94 Aligned_cols=237 Identities=13% Similarity=0.083 Sum_probs=187.5
Q ss_pred HcCCHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHH
Q 002199 504 SLGRMR-EALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEY 582 (954)
Q Consensus 504 ~lg~~e-eAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~ 582 (954)
..|.+. +|+..+.++|.++|++..+|..++.++..++.. ..|+. .
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~------------~~~~~-------------------~--- 86 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETE------------KSPEE-------------------S--- 86 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH------------SCHHH-------------------H---
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhccc------------ccchh-------------------h---
Confidence 445554 799999999999999999999999998876542 11110 0
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHhchhhhhhhhhhhhccCcc
Q 002199 583 INCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRK--YEEAIQLCEHTLPVAEKNFASVLADNGSV 660 (954)
Q Consensus 583 l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~--~eeAi~~~ekaL~l~p~~~~~~~~~~~~~ 660 (954)
...+. +++..+..++..+|.+..+|..++.++..+++ +++++.++.++++.+|.++.
T Consensus 87 ---------~~~l~---~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~--------- 145 (331)
T 3dss_A 87 ---------AALVK---AELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH--------- 145 (331)
T ss_dssp ---------HHHHH---HHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHH---------
T ss_pred ---------hHHHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHH---------
Confidence 00011 67778888888999999999999999999884 89999999999999998865
Q ss_pred hhhHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----
Q 002199 661 TYSLARLWRWRLISKSYFCIGK-LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS----- 734 (954)
Q Consensus 661 ~~~~~~l~a~~~Lg~~y~~lG~-~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~----- 734 (954)
+|...+.++...|. ++++++++.+++..+|.+.. +|..++.++...
T Consensus 146 --------AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S--------------------AW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 146 --------CWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS--------------------SWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp --------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH--------------------HHHHHHHHHHHHSCCC-
T ss_pred --------HHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH--------------------HHHHHHHHHHHhhhccc
Confidence 78888888888888 68999999999999988865 455566665555
Q ss_pred ---------CCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHhCCCCHH
Q 002199 735 ---------GRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQAL-----------GQIADAIADCSLAMALDENYTK 794 (954)
Q Consensus 735 ---------g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~l-----------g~~eeAi~~~ekAL~ldP~~~~ 794 (954)
+.++++++++.+++.++ |.+..+|+.+..++... +.+++++..+.++++++|++..
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~----P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w 273 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTD----PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKW 273 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccch
Confidence 56899999999999999 77888887665555544 5689999999999999999977
Q ss_pred HHHHHHHHHH---HhcCHHHHHHHHHHHHHHhhhhH
Q 002199 795 AVSRRAALHE---MIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 795 al~~lA~ly~---~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
.+..++.+.. ..+..++....|.++++++|-..
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~ 309 (331)
T 3dss_A 274 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 309 (331)
T ss_dssp HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchh
Confidence 7666655433 35788999999999999976543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=158.63 Aligned_cols=196 Identities=15% Similarity=0.165 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
.+..++.+|..++..|+|++|+.+|+++|..+|.+. .+|+++|.+|+.+|++++|+.+|+++++++|++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA----------VYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH----------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 467899999999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERIN 606 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~ 606 (954)
.+++.+|.+|..+|++++|+..|+++++++|++........ ....... ++.....
T Consensus 73 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~----------------~~~~~~~---------~~~~~~~ 127 (281)
T 2c2l_A 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI----------------PSALRIA---------KKKRWNS 127 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHH----------------HHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHH----------------HHHHHHH---------HHHHHHH
Confidence 99999999999999999999999999999997532211000 0000000 1111111
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHc-CCHHH
Q 002199 607 EALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCI-GKLEV 685 (954)
Q Consensus 607 kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~l-G~~ee 685 (954)
......|.+..+...++.++ .|++++|++.+++++++.|.+.. ....++.++... +.+++
T Consensus 128 ~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~l~~~~~~~~~~~~~ 188 (281)
T 2c2l_A 128 IEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGH-----------------IRAQQACIEAKHDKYMAD 188 (281)
T ss_dssp HHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHH-----------------HTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhh-----------------hhhHHHHHHHHHHHHHHH
Confidence 22235566777777776654 79999999999999999987643 223344455544 77889
Q ss_pred HHHHHHHHHhh
Q 002199 686 ALDLLQKLEQV 696 (954)
Q Consensus 686 Al~~l~kal~l 696 (954)
|...|.++...
T Consensus 189 a~~~f~~a~~~ 199 (281)
T 2c2l_A 189 MDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHSSCT
T ss_pred HHHHHHhhhcc
Confidence 99999888663
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=158.68 Aligned_cols=170 Identities=15% Similarity=0.114 Sum_probs=155.0
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002199 612 SSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQ 691 (954)
Q Consensus 612 ~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~ 691 (954)
-|.+...++.+|..+...|++++|+..|++++..+|++.. +++.+|.+|...|++++|+..|+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~-----------------a~~~la~~~~~~g~~~~A~~~l~ 175 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGE-----------------IGLLLAETLIALNRSEDAEAVLX 175 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHH-----------------HHHHHHHHHHHTTCHHHHHHHHT
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchh-----------------HHHHHHHHHHHCCCHHHHHHHHH
Confidence 3888999999999999999999999999999999998855 78899999999999999999999
Q ss_pred HHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH
Q 002199 692 KLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA 771 (954)
Q Consensus 692 kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~ 771 (954)
+++..+|... ..+...+..+...++..+|+..|++++..+ |.+..+++++|.+|..
T Consensus 176 ~~~~~~p~~~--------------------~~~~~~~~~l~~~~~~~~a~~~l~~al~~~----P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 176 TIPLQDQDTR--------------------YQGLVAQIELLXQAADTPEIQQLQQQVAEN----PEDAALATQLALQLHQ 231 (287)
T ss_dssp TSCGGGCSHH--------------------HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC----TTCHHHHHHHHHHHHH
T ss_pred hCchhhcchH--------------------HHHHHHHHHHHhhcccCccHHHHHHHHhcC----CccHHHHHHHHHHHHH
Confidence 9999888321 123345666778889999999999999999 8889999999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 772 LGQIADAIADCSLAMALDENY--TKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 772 lg~~eeAi~~~ekAL~ldP~~--~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
.|++++|+..|.+++.++|++ ..++..++.++..+|+.++|+..|++++..
T Consensus 232 ~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 232 VGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 999999999999999999999 899999999999999999999999999875
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.6e-14 Score=154.93 Aligned_cols=166 Identities=12% Similarity=0.044 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG 572 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~ 572 (954)
..++.+|..++..|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|++++..+|+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~------------- 184 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT------------- 184 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH-------------
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch-------------
Confidence 7899999999999999999999999999999999999999999999999999999999999998853
Q ss_pred HHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh
Q 002199 573 LQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 573 l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~ 652 (954)
....+..+..+...+... .|+..|++++..+|.++.+++.+|.+|...|++++|+..|+++++.+|.+...
T Consensus 185 ------~~~~~~~~~~l~~~~~~~---~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 185 ------RYQGLVAQIELLXQAADT---PEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp ------HHHHHHHHHHHHHHHTSC---HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred ------HHHHHHHHHHHHhhcccC---ccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 222344455566667777 68888999999999999999999999999999999999999999999976221
Q ss_pred hhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 653 VLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQ 695 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~ 695 (954)
.++..++.+|..+|+.++|+..|++++.
T Consensus 256 ---------------~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 256 ---------------QTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp ---------------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 1678899999999999999999999875
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-15 Score=174.33 Aligned_cols=270 Identities=12% Similarity=0.085 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~ 527 (954)
.+.|..+|..+.+.|++++|++.|.++ .++ ..|...+.++..+|+|++|+.+++.+++..++ +.
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika-----~D~----------~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~ 95 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDP----------SSYMEVVQAANTSGNWEELVKYLQMARKKARE-SY 95 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCH----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-ch
Confidence 369999999999999999999999774 233 67888999999999999999999999986444 67
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINE 607 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~k 607 (954)
+...++.+|.++|++.++.+.++. |. ...+...+..+...|.|+ +|+.+|.+
T Consensus 96 i~~~Li~~Y~Klg~l~e~e~f~~~-----pn--------------------~~a~~~IGd~~~~~g~ye---eA~~~Y~~ 147 (449)
T 1b89_A 96 VETELIFALAKTNRLAELEEFING-----PN--------------------NAHIQQVGDRCYDEKMYD---AAKLLYNN 147 (449)
T ss_dssp -------------CHHHHTTTTTC-----C------------------------------------CTT---THHHHHHH
T ss_pred hHHHHHHHHHHhCCHHHHHHHHcC-----Cc--------------------HHHHHHHHHHHHHcCCHH---HHHHHHHH
Confidence 788899999999999998887752 32 236888899999999999 67777776
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHH
Q 002199 608 ALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVAL 687 (954)
Q Consensus 608 aL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl 687 (954)
+ ..+..+|.++..+|+|++|++.++++. +| ..|.....++...|+++.|.
T Consensus 148 a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~--------------------~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 148 V--------SNFGRLASTLVHLGEYQAAVDGARKAN--ST--------------------RTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp T--------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CH--------------------HHHHHHHHHHHHTTCHHHHH
T ss_pred h--------hhHHHHHHHHHHhccHHHHHHHHHHcC--Cc--------------------hhHHHHHHHHHHcCcHHHHH
Confidence 5 368899999999999999999999993 22 15777888999999999997
Q ss_pred HHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHH
Q 002199 688 DLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAA 767 (954)
Q Consensus 688 ~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~ 767 (954)
.+..... ..| . .+..+...|.+.|++++|+.+|++++.++ +....++..+|.
T Consensus 198 ~~~l~L~-~~a---d--------------------~l~~lv~~Yek~G~~eEai~lLe~aL~le----~ah~~~ftel~i 249 (449)
T 1b89_A 198 MCGLHIV-VHA---D--------------------ELEELINYYQDRGYFEELITMLEAALGLE----RAHMGMFTELAI 249 (449)
T ss_dssp HTTTTTT-TCH---H--------------------HHHHHHHHHHHTTCHHHHHHHHHHHTTST----TCCHHHHHHHHH
T ss_pred HHHHHHH-hCH---h--------------------hHHHHHHHHHHCCCHHHHHHHHHHHhCCc----HHHHHHHHHHHH
Confidence 6665421 221 1 12236778899999999999999999998 777888888988
Q ss_pred HHHH--hcCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002199 768 ALQA--LGQIADAIADCSLAMALDE-----NYTKAVSRRAALHEMIRDYTQAASDLQRL 819 (954)
Q Consensus 768 ~y~~--lg~~eeAi~~~ekAL~ldP-----~~~~al~~lA~ly~~lg~~eeAi~~~ekA 819 (954)
+|.+ .++..++++.|...+.+.| .++..|..+..+|...++|+.|+..+-..
T Consensus 250 l~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 250 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 8875 5689999999988888877 78889999999999999999999866443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-15 Score=170.09 Aligned_cols=200 Identities=17% Similarity=0.150 Sum_probs=163.9
Q ss_pred HHHHHHHH----HHhcCCCCHHHHHHHHHHHH------------HccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhh
Q 002199 600 SALERINE----ALSISSCSEKLLEMKADALY------------MLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYS 663 (954)
Q Consensus 600 eAL~~l~k----aL~~~P~~~~~~~~lA~~~~------------~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~ 663 (954)
+|+..+.. ++.+.|.. ++..+|.... .++++++|+..|++++...|....
T Consensus 83 ~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~------------ 148 (336)
T 1p5q_A 83 RAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQST------------ 148 (336)
T ss_dssp HHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHH------------
T ss_pred HHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHH------------
Confidence 66777777 77788876 4445554432 566777888888888877776543
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 002199 664 LARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEH 743 (954)
Q Consensus 664 ~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~ 743 (954)
++..+|.+|+..|++++|+.+|++++.+.|........ .........+..+.++|.+|+..|+|++|+.+
T Consensus 149 -----~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~-----~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 218 (336)
T 1p5q_A 149 -----IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE-----EAQKAQALRLASHLNLAMCHLKLQAFSAAIES 218 (336)
T ss_dssp -----HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH-----HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChH-----HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 78899999999999999999999999999987532111 11112233456788999999999999999999
Q ss_pred HHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHH
Q 002199 744 YTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQA-ASDLQRLVSI 822 (954)
Q Consensus 744 y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeA-i~~~ekAL~l 822 (954)
|++++.++ |.+..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.++..+|++++| ...|++++..
T Consensus 219 ~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 219 CNKALELD----SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC----CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 778999999999999999999999999999999999999999999999999999999 6688888877
Q ss_pred hhhhH
Q 002199 823 LENQS 827 (954)
Q Consensus 823 ~p~~~ 827 (954)
.+...
T Consensus 295 ~~~~~ 299 (336)
T 1p5q_A 295 LAEEE 299 (336)
T ss_dssp HHHHH
T ss_pred hhhcc
Confidence 66544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=146.17 Aligned_cols=165 Identities=11% Similarity=-0.056 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~ 527 (954)
.+.+..+|..++..|++++|+..|+++++.+|++. .+++.+|.++..+|++++|+..|++++.++| ++.
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----------~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~ 74 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRG----------DVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS 74 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH----------HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----------HHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH
Confidence 45678999999999999999999999999999997 9999999999999999999999999999999 887
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Q 002199 528 VYMRAAKCHL-VLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERIN 606 (954)
Q Consensus 528 a~~~LA~iy~-~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~ 606 (954)
.+..++.+.. ..+...+|+..|+++++++|++ ...++.++..+...|+++ +|+..|.
T Consensus 75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~-------------------~~~~~~la~~~~~~g~~~---~A~~~~~ 132 (176)
T 2r5s_A 75 YKSLIAKLELHQQAAESPELKRLEQELAANPDN-------------------FELACELAVQYNQVGRDE---EALELLW 132 (176)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTC-------------------HHHHHHHHHHHHHTTCHH---HHHHHHH
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHcccHH---HHHHHHH
Confidence 7776665543 3344556899999999999986 566888999999999999 8999999
Q ss_pred HHHhcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHhchh
Q 002199 607 EALSISSCS--EKLLEMKADALYMLRKYEEAIQLCEHTLPV 645 (954)
Q Consensus 607 kaL~~~P~~--~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l 645 (954)
+++..+|.. +.++..+|.++..+|++++|+..|+++|..
T Consensus 133 ~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 133 NILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 999999875 669999999999999999999999988753
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.5e-14 Score=134.55 Aligned_cols=106 Identities=23% Similarity=0.314 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..++.+.++..+|+.++++|+|++|+.+|++||+++|.+. .+|.++|.+|+.+|+|++|+.+|+++|+++
T Consensus 3 ~~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~----------~~~~nlg~~~~~~~~~~~A~~~~~~al~~~ 72 (127)
T 4gcn_A 3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI----------TFYNNKAAVYFEEKKFAECVQFCEKAVEVG 72 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------HHHHhHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 4578899999999999999999999999999999999997 899999999999999999999999999998
Q ss_pred CCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchh
Q 002199 523 PNF-------LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAA 558 (954)
Q Consensus 523 P~~-------~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~ 558 (954)
|++ ..+|.++|.++..+|++++|+++|+++|...|+
T Consensus 73 ~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 73 RETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred cccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 865 468999999999999999999999999998875
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.9e-14 Score=139.79 Aligned_cols=110 Identities=14% Similarity=0.062 Sum_probs=106.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 440 ~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
.....|+.+++|+.+|..+++.|+|++|+.+|++++.++|.++ .+|+++|.+|..+|+|++|+..|++++
T Consensus 28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~----------~~~~~lg~~~~~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV----------DYIMGLAAIYQIKEQFQQAADLYAVAF 97 (151)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4456799999999999999999999999999999999999997 999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 520 TVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 520 el~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
+++|+++.+|+.+|.+|..+|++++|+..|++++++.|+.
T Consensus 98 ~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999999999999999875
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7.8e-14 Score=166.86 Aligned_cols=159 Identities=13% Similarity=0.058 Sum_probs=130.5
Q ss_pred ccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHH
Q 002199 629 LRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEIL 708 (954)
Q Consensus 629 lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l 708 (954)
.|++++|+..|++++++.|.+.. +|+.+|.+|...|++++|+.+|+++++++|.+..
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------ 58 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFV-----------------AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE------ 58 (568)
T ss_dssp -------------------CCHH-----------------HHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHH------
T ss_pred CccHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------
Confidence 47899999999999999997754 7889999999999999999999999999987643
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 709 ESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 709 ~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
.+..+|.++...|++++|+.+|++++.++ |.+..+++++|.+|..+|++++|+..|++++++
T Consensus 59 --------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 59 --------------AVARLGRVRWTQQRHAEAAVLLQQASDAA----PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp --------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56779999999999999999999999999 778899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHhhhhHH
Q 002199 789 DENYTKAVSRRAALHEMI---RDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 789 dP~~~~al~~lA~ly~~l---g~~eeAi~~~ekAL~l~p~~~~ 828 (954)
+|++..++..+|.++..+ |++++|+..|++++++.|....
T Consensus 121 ~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 163 (568)
T 2vsy_A 121 LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163 (568)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccC
Confidence 999999999999999999 9999999999999999887543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.4e-14 Score=168.27 Aligned_cols=159 Identities=8% Similarity=0.004 Sum_probs=132.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 002199 461 NNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLG 540 (954)
Q Consensus 461 ~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG 540 (954)
.|++++|+.+|+++++.+|.+. .+|+++|.+|..+|++++|+..|+++++++|++..+++.+|.+|..+|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~----------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 71 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDF----------VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ 71 (568)
T ss_dssp -------------------CCH----------HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 4789999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHH
Q 002199 541 EIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLE 620 (954)
Q Consensus 541 ~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~ 620 (954)
++++|+.+|+++++++|.+ ...++.++..+...|+++ +|+..|++++.++|.+..++.
T Consensus 72 ~~~~A~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~ 129 (568)
T 2vsy_A 72 RHAEAAVLLQQASDAAPEH-------------------PGIALWLGHALEDAGQAE---AAAAAYTRAHQLLPEEPYITA 129 (568)
T ss_dssp CHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHCTTCHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCC-------------------HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999999999975 456788899999999999 889999999999999999999
Q ss_pred HHHHHHHHc---cCHHHHHHHHHHhchhhhhhhh
Q 002199 621 MKADALYML---RKYEEAIQLCEHTLPVAEKNFA 651 (954)
Q Consensus 621 ~lA~~~~~l---g~~eeAi~~~ekaL~l~p~~~~ 651 (954)
.+|.++..+ |++++|+..|+++++..|....
T Consensus 130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 163 (568)
T 2vsy_A 130 QLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163 (568)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhcCCcccC
Confidence 999999999 9999999999999999997644
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.54 E-value=6.6e-14 Score=138.03 Aligned_cols=118 Identities=13% Similarity=0.021 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccC--CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCC--IKPLVLCYSNRAATRISLGRMREALEDCMMAATV- 521 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~--~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel- 521 (954)
...+..+..+|+.++..|+|++|+..|++||+++|+++..... ....+.+|.++|.++..+|+|++|+.+|++||++
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 4578899999999999999999999999999999995321100 0012459999999999999999999999999999
Q ss_pred ------CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhh
Q 002199 522 ------DPNFLKVY----MRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLD 562 (954)
Q Consensus 522 ------~P~~~~a~----~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~ 562 (954)
+|++..+| +++|.++..+|++++|+.+|+++++++|++...
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 99999999 999999999999999999999999999987543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=130.08 Aligned_cols=103 Identities=30% Similarity=0.425 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
|..++.|..+|..++..|+|++|+.+|+++|+++|.+. .+|.++|.+|+.+|++++|+..|+++++++|+
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 70 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA----------RGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh----------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 35688999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhch
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAA 557 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P 557 (954)
+..+++.+|.++..+|++++|+..|+++++++|
T Consensus 71 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 103 (126)
T 3upv_A 71 FVRAYIRKATAQIAVKEYASALETLDAARTKDA 103 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999994
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-13 Score=147.86 Aligned_cols=186 Identities=12% Similarity=0.048 Sum_probs=149.2
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 615 SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLE 694 (954)
Q Consensus 615 ~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal 694 (954)
....+...+..++..|+|++|+..+.++++..+.... ....+..++.+|.++...|++++|+.+|++++
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 142 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE-----------FQQFLQWQYYVAAYVLKKVDYEYCILELKKLL 142 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH-----------HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh-----------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3445667788999999999999999999987664321 11122345678999999999999999999999
Q ss_pred hhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---ccCCchhhHHHHHHHHHHHHH
Q 002199 695 QVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALST---NIESRPFAAICFCNRAAALQA 771 (954)
Q Consensus 695 ~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l---~~~~~p~~a~~~~~lA~~y~~ 771 (954)
.+.+...... ..+.++..+|.+|...|+|++|+.+|++|+.+ .+........+++++|.+|..
T Consensus 143 ~~~~~~~~~~--------------~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~ 208 (293)
T 2qfc_A 143 NQQLTGIDVY--------------QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL 208 (293)
T ss_dssp TTCCCSSCTT--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCchH--------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence 8766543311 12457788999999999999999999999955 332222244799999999999
Q ss_pred hcCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHhhh
Q 002199 772 LGQIADAIADCSLAMALDEN------YTKAVSRRAALHEMIRDYTQA-ASDLQRLVSILEN 825 (954)
Q Consensus 772 lg~~eeAi~~~ekAL~ldP~------~~~al~~lA~ly~~lg~~eeA-i~~~ekAL~l~p~ 825 (954)
+|+|++|+.+|++++.+.+. ...+++.+|.+|..+|++++| ..+|++++.+...
T Consensus 209 ~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~ 269 (293)
T 2qfc_A 209 DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999988543 278999999999999999999 8889999999654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-12 Score=144.77 Aligned_cols=193 Identities=11% Similarity=0.019 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG-RMREALEDCMMAATVDP 523 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg-~~eeAl~~~~kALel~P 523 (954)
++..+++..+.......+..++|+.++.++|.++|++. .+|+.++.++..++ .+++++..+.++|..+|
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~y----------taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP 120 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHY----------TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL 120 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhH----------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC
Confidence 44455555555555556666899999999999999998 99999999999999 59999999999999999
Q ss_pred CcHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChH-----
Q 002199 524 NFLKVYMRAAKCHLVL-G-EIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSE----- 596 (954)
Q Consensus 524 ~~~~a~~~LA~iy~~l-G-~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~----- 596 (954)
++..+|..++.++..+ + +++++++.+.++|+++|.+ ...|..+...+...+.++
T Consensus 121 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN-------------------y~AW~~R~wvl~~l~~~~~~~~~ 181 (349)
T 3q7a_A 121 KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN-------------------YHTWAYLHWLYSHFSTLGRISEA 181 (349)
T ss_dssp CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC-------------------HHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHhccccccchh
Confidence 9999999999999998 8 9999999999999999987 333444444444433332
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-------HHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHH
Q 002199 597 AASSALERINEALSISSCSEKLLEMKADALYMLRK-------YEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWR 669 (954)
Q Consensus 597 ~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~-------~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a 669 (954)
...++++.+.+++..+|.+..++..++.++..+++ ++++++++.++|.++|.+.. +
T Consensus 182 ~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S-----------------a 244 (349)
T 3q7a_A 182 QWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS-----------------A 244 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH-----------------H
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH-----------------H
Confidence 23378999999999999999999999999999987 79999999999999999865 6
Q ss_pred HHHHHHHHHHcCCH
Q 002199 670 WRLISKSYFCIGKL 683 (954)
Q Consensus 670 ~~~Lg~~y~~lG~~ 683 (954)
|+.+..++...|..
T Consensus 245 W~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 245 WNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCC
Confidence 76666677666653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.52 E-value=9.9e-15 Score=144.06 Aligned_cols=102 Identities=16% Similarity=0.107 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
+..++.+|..++..|+|++|+.+|++++.++ |.++.+|+++|.+|..+|++++|+..|+++++++|+++.+|+.+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~----P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD----FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 4578889999999999999999999999999 888999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 801 ALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 801 ~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.+|..+|++++|+.+|++++++.|+.
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999997654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.52 E-value=9.9e-14 Score=136.79 Aligned_cols=109 Identities=20% Similarity=0.286 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC--------chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-
Q 002199 718 VRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES--------RPFAAICFCNRAAALQALGQIADAIADCSLAMAL- 788 (954)
Q Consensus 718 ~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~--------~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l- 788 (954)
+..+..+.++|+.++..|+|++|+..|++||.++|.. .|.++.+|+++|.++..+|+|++|+.+|++||++
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 3456678889999999999999999999999999762 1345669999999999999999999999999999
Q ss_pred ------CCCCHHHH----HHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 789 ------DENYTKAV----SRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 789 ------dP~~~~al----~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
+|++..+| +++|.++..+|++++|+.+|++++++.|++
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 99999999 999999999999999999999999997654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-12 Score=145.78 Aligned_cols=235 Identities=12% Similarity=0.023 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhchhhhhhHHHHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGE-IENAQHYYHKLLNSAAAVCLDRRITIEAAD 571 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~-~eeAl~~yekaL~l~P~~~~~~~~~~ea~~ 571 (954)
.++..+..+....+..++|+..+.++|.++|++..+|..++.++..++. +++++..+.++|..
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~---------------- 118 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ---------------- 118 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----------------
Confidence 3344444444445556789999999999999999999999999999884 77666666665554
Q ss_pred HHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-c-CHHHHHHHHHHhchhhhhh
Q 002199 572 GLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYML-R-KYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 572 ~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~l-g-~~eeAi~~~ekaL~l~p~~ 649 (954)
+|.+..+|..++.++..+ + ++++++.++.+++..+|.+
T Consensus 119 ----------------------------------------nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN 158 (349)
T 3q7a_A 119 ----------------------------------------NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN 158 (349)
T ss_dssp ----------------------------------------TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC
T ss_pred ----------------------------------------CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC
Confidence 555666777777777776 6 7778888888888888777
Q ss_pred hhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHH
Q 002199 650 FASVLADNGSVTYSLARLWRWRLISKSYFCIGKLE--------VALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRAL 721 (954)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~e--------eAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~ 721 (954)
+. +|..++.++...+.++ ++++++.++++.+|.+..
T Consensus 159 y~-----------------AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~S------------------- 202 (349)
T 3q7a_A 159 YH-----------------TWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNS------------------- 202 (349)
T ss_dssp HH-----------------HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHH-------------------
T ss_pred HH-----------------HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHH-------------------
Confidence 54 6666777776666666 999999999999998855
Q ss_pred HHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCH-------------------
Q 002199 722 LHHKSAGNEAFKSGR-------YTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQI------------------- 775 (954)
Q Consensus 722 ~~~~~lG~~~~~~g~-------~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~------------------- 775 (954)
+|..++.++...+. ++++++++.++|.++ |.+..+|+++..++...|+-
T Consensus 203 -AW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~----P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (349)
T 3q7a_A 203 -AWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI----PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPD 277 (349)
T ss_dssp -HHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC------
T ss_pred -HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhcCCCccccccccccccccccccc
Confidence 67778888888876 799999999999999 88889999988888887753
Q ss_pred -HHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHhh
Q 002199 776 -ADAIADCSLAMALD------ENYTKAVSRRAALHEMIRDYTQAASDLQRLV-SILE 824 (954)
Q Consensus 776 -eeAi~~~ekAL~ld------P~~~~al~~lA~ly~~lg~~eeAi~~~ekAL-~l~p 824 (954)
.+-...+...+... +..+.++..++.+|...|+.++|++.|+.+. +.+|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 278 IETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp --------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred chhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh
Confidence 33444444433332 5678999999999999999999999999987 5544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.6e-13 Score=144.05 Aligned_cols=228 Identities=11% Similarity=-0.012 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRA-------AKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRI 565 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~L-------A~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~ 565 (954)
.-++..|.-+ .-+++..|++.|.++++++|+...+|..+ +.++..++++.+++..+.+.+.+.|......
T Consensus 8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~-- 84 (282)
T 4f3v_A 8 ASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNAR-- 84 (282)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCE--
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh--
Confidence 4455666665 58999999999999999999999999999 8999999999999999999999988642110
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHhc
Q 002199 566 TIEAADGLQKAQKVTEYINCSGKLLE-QKTSEAASSALERINEALSIS-SCSEKLLEMKADALYMLRKYEEAIQLCEHTL 643 (954)
Q Consensus 566 ~~ea~~~l~~~~~~~~~l~~a~~ll~-~g~~~~a~eAL~~l~kaL~~~-P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL 643 (954)
+. .|-|.+ |... -.-..++..+|.+|...|+|++|++.|..++
T Consensus 85 ------------------------~~~~g~y~~-----------~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~ 129 (282)
T 4f3v_A 85 ------------------------IAIGGLYGD-----------ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAP 129 (282)
T ss_dssp ------------------------EECCTTTCC-----------CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSC
T ss_pred ------------------------hccCCcccc-----------cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 00 010000 0000 0125677888999999999999999999998
Q ss_pred hhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 002199 644 PVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLH 723 (954)
Q Consensus 644 ~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~ 723 (954)
...|... .++.+|.+++..+++++|+.+|+++....+ . .....+
T Consensus 130 ~~~p~~~------------------~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d---~---------------~~~~~a 173 (282)
T 4f3v_A 130 VAGSEHL------------------VAWMKAVVYGAAERWTDVIDQVKSAGKWPD---K---------------FLAGAA 173 (282)
T ss_dssp CTTCHHH------------------HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC---H---------------HHHHHH
T ss_pred hcCCchH------------------HHHHHHHHHHHcCCHHHHHHHHHHhhccCC---c---------------ccHHHH
Confidence 8877552 356677788888888888877775543210 0 011124
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchh-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPF-AAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVS 797 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~-~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~ 797 (954)
++.+|.++...|++++|+.+|++++... ..|. ...+++++|.++..+|+.++|+..|++++..+|+ ..+..
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~--~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~ 245 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSP--AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA 245 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTST--TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCC--CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence 4556666666666666666666665321 1022 4456666666666666666666666666666665 44443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.5e-13 Score=129.60 Aligned_cols=113 Identities=23% Similarity=0.241 Sum_probs=106.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 440 ~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
.....|.....++.+|..++..|+|++|+.+|++++..+|.+. .+|+.+|.+|..+|++++|+..|++++
T Consensus 10 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~lg~~~~~~g~~~~A~~~~~~al 79 (142)
T 2xcb_A 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA----------RYFLGLGACRQSLGLYEQALQSYSYGA 79 (142)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH----------HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455688999999999999999999999999999999999997 899999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhh
Q 002199 520 TVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLD 562 (954)
Q Consensus 520 el~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~ 562 (954)
.++|+++.+++.+|.+|..+|++++|+..|++++.+.|.+...
T Consensus 80 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 80 LMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGG
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcch
Confidence 9999999999999999999999999999999999999976433
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.50 E-value=7.9e-13 Score=144.12 Aligned_cols=182 Identities=12% Similarity=0.057 Sum_probs=147.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002199 619 LEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGS 698 (954)
Q Consensus 619 ~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p 698 (954)
+...+..++..|+|++|+..+++++...+.... ....+..+..+|.++...+++++|+.+|++++.+.+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~ 146 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE-----------FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHH-----------HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChH-----------HHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc
Confidence 344578889999999999999999986654322 011122344589999999999999999999999766
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc---CCchhhHHHHHHHHHHHHHhcCH
Q 002199 699 ISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI---ESRPFAAICFCNRAAALQALGQI 775 (954)
Q Consensus 699 ~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~---~~~p~~a~~~~~lA~~y~~lg~~ 775 (954)
...... ..+..+..+|.+|...|+|++|+.+|++++.... ...+..+.+++++|.+|..+|+|
T Consensus 147 ~~~~~~--------------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 3u3w_A 147 TGIDVY--------------QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp CCSCTT--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHH--------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH
Confidence 544411 2344678899999999999999999999996432 34467788999999999999999
Q ss_pred HHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhh
Q 002199 776 ADAIADCSLAMALDENY------TKAVSRRAALHEMIR-DYTQAASDLQRLVSILEN 825 (954)
Q Consensus 776 eeAi~~~ekAL~ldP~~------~~al~~lA~ly~~lg-~~eeAi~~~ekAL~l~p~ 825 (954)
++|+.++++++++.+.. +.+++.+|.+|..+| ++++|+.+|++++.+...
T Consensus 213 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999886443 889999999999999 579999999999999653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-13 Score=126.72 Aligned_cols=121 Identities=26% Similarity=0.351 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
+..+..+|..++..|+|++|+.+|++++.++ |.++.+|+++|.+|..+|++++|+..|+++++++|+++.+++.+|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA----PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 4567889999999999999999999999999 778899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHh
Q 002199 801 ALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRH 852 (954)
Q Consensus 801 ~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~ 852 (954)
.++..+|++++|+.+|++++++.|+... .|.+...+..+..+...
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKDAEVNN-------GSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHT-------TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhCcccCC-------chhHHHHHHHHHHHHHh
Confidence 9999999999999999999999865432 46666666666666543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-13 Score=135.33 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=100.3
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHH
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINS--------VPLSETAGCCIKPLVLCYSNRAATRISLGRMREALED 514 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~--------~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~ 514 (954)
+....+..+..+|+.++..|+|++|+.+|+++|.+ .|.++.........+.+|+++|.||+.+|+|++|+.+
T Consensus 6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34567889999999999999999999999999999 2222100000011248999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 515 CMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 515 ~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
|+++|+++|+++.+|+++|.+|..+|++++|+..|++++.++|.+.
T Consensus 86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 9999999999999999999999999999999999999999999863
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-12 Score=136.62 Aligned_cols=175 Identities=10% Similarity=-0.043 Sum_probs=152.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFC 679 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~ 679 (954)
+|+..|+++.+. .++.+++.+|.+|...+++++|+.+|+++++..... +++.||.+|..
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~-------------------a~~~lg~~y~~ 62 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGD-------------------ALALLAQLKIR 62 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHH-------------------HHHHHHHHTTS
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH-------------------HHHHHHHHHHc
Confidence 577888888765 689999999999999999999999999998764321 68899999998
Q ss_pred cC----CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhc
Q 002199 680 IG----KLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFK----SGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 680 lG----~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~----~g~~eeAi~~y~kAL~l~ 751 (954)
+ ++++|+.+|+++.... + ..++.++|.+|.. .+++++|+.+|++++...
T Consensus 63 -~g~~~~~~~A~~~~~~A~~~g--~--------------------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 119 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVEAG--S--------------------KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS 119 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHHTT--C--------------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST
T ss_pred -CCCCCCHHHHHHHHHHHHHCC--C--------------------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC
Confidence 7 9999999999997642 2 2367779999988 899999999999999887
Q ss_pred cCCch--hhHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-c-----CHHHHHHHHHHH
Q 002199 752 IESRP--FAAICFCNRAAALQA----LGQIADAIADCSLAMALDENYTKAVSRRAALHEMI-R-----DYTQAASDLQRL 819 (954)
Q Consensus 752 ~~~~p--~~a~~~~~lA~~y~~----lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~l-g-----~~eeAi~~~ekA 819 (954)
+ ..+.++++||.+|.. .+++++|+.+|++++++ |.++.+++.+|.+|..- | ++++|+.+|+++
T Consensus 120 ----~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 120 ----ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp ----TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred ----CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 4 458999999999999 88999999999999998 77888999999999875 3 899999999999
Q ss_pred HHHh
Q 002199 820 VSIL 823 (954)
Q Consensus 820 L~l~ 823 (954)
++.-
T Consensus 195 ~~~g 198 (212)
T 3rjv_A 195 CLEG 198 (212)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9883
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.2e-13 Score=131.46 Aligned_cols=108 Identities=17% Similarity=0.138 Sum_probs=103.8
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..|.....++.+|..++..|+|++|+.+|++++.++|.+. .+|+++|.+|..+|++++|+..|++++.++
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS----------RFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH----------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4588899999999999999999999999999999999997 899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
|+++.+++.+|.+|..+|++++|+..|++++++.|+++
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 99999999999999999999999999999999998754
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.8e-13 Score=132.14 Aligned_cols=127 Identities=20% Similarity=0.264 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--------cCC------chhhHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN--------IES------RPFAAICFCNRAAALQALGQIADAIADCSL 784 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~--------~~~------~p~~a~~~~~lA~~y~~lg~~eeAi~~~ek 784 (954)
..+..+..+|..++..|+|++|+.+|.+++.+. |.. .|....+|+++|.+|..+|+|++|+.+|++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 445678889999999999999999999999981 111 277889999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhh
Q 002199 785 AMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSME 857 (954)
Q Consensus 785 AL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e 857 (954)
+|.++|.++.+|+.+|.+|..+|++++|+.+|++++++.|++.. .+...|..+...+....
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~------------~~~~~l~~~~~~~~~~~ 149 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAAS------------VVAREMKIVTERRAEKK 149 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHH------------HHHHHHHHHHHHHHHHT
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHH------------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999776542 22355666666554443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.2e-13 Score=131.60 Aligned_cols=109 Identities=26% Similarity=0.380 Sum_probs=104.2
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 002199 442 AAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV 521 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel 521 (954)
...+..+..|+.+|..++..|+|++|+.+|+++|+++|.+. .+|+++|.+|+.+|++++|+.+|++++++
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP----------IYLSNRAAAYSASGQHEKAAEDAELATVV 74 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH----------HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34567889999999999999999999999999999999987 99999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 522 DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 522 ~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
+|++..+|+.+|.+|..+|++++|+.+|+++++++|++.
T Consensus 75 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 75 DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence 999999999999999999999999999999999999864
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.2e-14 Score=167.74 Aligned_cols=200 Identities=13% Similarity=0.061 Sum_probs=179.8
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHhchhhhhhhhh
Q 002199 583 INCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRK----------YEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 583 l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~----------~eeAi~~~ekaL~l~p~~~~~ 652 (954)
+.........+++.+ +|+..+.+++.++|.+..+|..++.++..+++ +++|+..+++++..+|+++.
T Consensus 32 ~~~~~~~~~~~~~~e--eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~- 108 (567)
T 1dce_A 32 TQAVFQKRQAGELDE--SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG- 108 (567)
T ss_dssp HHHHHHHHHTTCCSH--HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH-
T ss_pred HHHHHHHHHcCCCCH--HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH-
Confidence 344445556677764 88999999999999999999999999999999 99999999999999999976
Q ss_pred hhhccCcchhhHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 653 VLADNGSVTYSLARLWRWRLISKSYFCIG--KLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE 730 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG--~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~ 730 (954)
+|+.++.++...+ ++++|++++.++++++|.+.. +|..++.+
T Consensus 109 ----------------aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~--------------------aW~~R~~~ 152 (567)
T 1dce_A 109 ----------------TWHHRCWLLSRLPEPNWARELELCARFLEADERNFH--------------------CWDYRRFV 152 (567)
T ss_dssp ----------------HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHH--------------------HHHHHHHH
T ss_pred ----------------HHHHHHHHHHHcccccHHHHHHHHHHHHhhcccccc--------------------HHHHHHHH
Confidence 8899999999999 779999999999999998865 67778999
Q ss_pred HHHcC-CHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHHHhCCCCHHH
Q 002199 731 AFKSG-RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQAL--------------GQIADAIADCSLAMALDENYTKA 795 (954)
Q Consensus 731 ~~~~g-~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~l--------------g~~eeAi~~~ekAL~ldP~~~~a 795 (954)
+...+ .+++|++++.++|+.+ |.+..+|++++.++..+ +.+++|++++.+||.++|++..+
T Consensus 153 l~~l~~~~~~el~~~~~~I~~~----p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~sa 228 (567)
T 1dce_A 153 AAQAAVAPAEELAFTDSLITRN----FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSA 228 (567)
T ss_dssp HHHTCCCHHHHHHHHHTTTTTT----CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHH
T ss_pred HHHcCCChHHHHHHHHHHHHHC----CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccH
Confidence 99999 9999999999999999 88899999999999986 67899999999999999999999
Q ss_pred HHHHHHHHHHhcCHHH------------HHHHHHHHHHHhhh
Q 002199 796 VSRRAALHEMIRDYTQ------------AASDLQRLVSILEN 825 (954)
Q Consensus 796 l~~lA~ly~~lg~~ee------------Ai~~~ekAL~l~p~ 825 (954)
|+.++.++...+++++ |+.+|.+++.+.|.
T Consensus 229 W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 229 WFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp HHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred HHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 9999999999999777 66778888887765
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=135.38 Aligned_cols=102 Identities=21% Similarity=0.189 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
...+..+|..++..|+|++|+..|++++.++ |.++.+|+++|.+|..+|++++|+..|++++.++|+++.+++.+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 96 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD----HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 4467789999999999999999999999999 788999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 801 ALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 801 ~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.+|..+|++++|+.+|++++++.|++
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 99999999999999999999997654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-12 Score=139.61 Aligned_cols=189 Identities=12% Similarity=0.015 Sum_probs=149.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
.+.....+..++..++..|+|++|+..|.++++..+.... .......++.+|.++...|++++|+..+++++++.+
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 146 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE----FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH----HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 3566778889999999999999999999999998876431 122345677899999999999999999999998765
Q ss_pred Cc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHH
Q 002199 524 NF------LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEA 597 (954)
Q Consensus 524 ~~------~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~ 597 (954)
.. ..++..+|.+|..+|++++|+.+|++++.+..... ....
T Consensus 147 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--------------------------------~~~~- 193 (293)
T 2qfc_A 147 TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--------------------------------DNEE- 193 (293)
T ss_dssp CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--------------------------------CCHH-
T ss_pred cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--------------------------------cccc-
Confidence 43 67899999999999999999999999986422100 0000
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHH
Q 002199 598 ASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSY 677 (954)
Q Consensus 598 a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y 677 (954)
....++.++|.+|..+|+|++|+.++++++.+.+.... ......+++.+|.+|
T Consensus 194 ----------------~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~-----------~~~~~~~~~~lg~~y 246 (293)
T 2qfc_A 194 ----------------FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS-----------MALIGQLYYQRGECL 246 (293)
T ss_dssp ----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-----------CSSHHHHHHHHHHHH
T ss_pred ----------------chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-----------HHHHHHHHHHHHHHH
Confidence 01247889999999999999999999999998754211 011123688999999
Q ss_pred HHcCCHHHH-HHHHHHHHhh
Q 002199 678 FCIGKLEVA-LDLLQKLEQV 696 (954)
Q Consensus 678 ~~lG~~eeA-l~~l~kal~l 696 (954)
..+|++++| ..+|++++.+
T Consensus 247 ~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 247 RKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHH
Confidence 999999999 8889999875
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=141.80 Aligned_cols=151 Identities=13% Similarity=-0.016 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF 525 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~ 525 (954)
..+..++.+|..++..|+|++|+.+|++++ .| +. .+|+++|.+|..+|++++|+..|+++++++|.+
T Consensus 4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~----------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 70 (213)
T 1hh8_A 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HS----------RICFNIGCMYTILKNMTEAEKAFTRSINRDKHL 70 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-Ch----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 355678899999999999999999999996 33 33 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 002199 526 LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERI 605 (954)
Q Consensus 526 ~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l 605 (954)
..+++.+|.+|..+|++++|+..|++++++.|.+.... +.
T Consensus 71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----------------------------------------~~ 110 (213)
T 1hh8_A 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID----------------------------------------YK 110 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEE----------------------------------------CG
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHH----------------------------------------HH
Confidence 99999999999999999999999999999988652110 01
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 606 NEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 606 ~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
...+...|..+.+++.+|.++..+|++++|+..|++++.+.|..
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 11223456667888999999999999999999999999998865
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-12 Score=120.72 Aligned_cols=133 Identities=25% Similarity=0.331 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
+|+.+|.++...|++++|+..+++++...|.+.. .+..+|.++...|++++|+.+|++++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------------~~~~~a~~~~~~~~~~~A~~~~~~~~ 62 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE--------------------AWYNLGNAYYKQGDYDEAIEYYQKAL 62 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH--------------------HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchh--------------------HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 5778999999999999999999999998776532 45668999999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 749 STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 749 ~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
... |....++..+|.++...|++++|+..+++++.+.|.+..+++.+|.++...|++++|+..|++++.+.|+
T Consensus 63 ~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 63 ELD----PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHC----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHC----CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 998 6678899999999999999999999999999999999999999999999999999999999999998664
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.46 E-value=9.5e-13 Score=147.12 Aligned_cols=152 Identities=17% Similarity=0.151 Sum_probs=124.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccC-----CchHHHHHHHHHHHHHHcCCHHHHHHH
Q 002199 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCC-----IKPLVLCYSNRAATRISLGRMREALED 514 (954)
Q Consensus 440 ~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~-----~~~la~~~~~lA~~y~~lg~~eeAl~~ 514 (954)
.....|..+..|..+|..++..|+|++|+.+|+++|.+.|.+...... ....+.+|+++|.||+.+|+|++|+.+
T Consensus 139 a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 218 (336)
T 1p5q_A 139 NSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIES 218 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345578899999999999999999999999999999999997310000 001248999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Q 002199 515 CMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKT 594 (954)
Q Consensus 515 ~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~ 594 (954)
|+++|+++|+++.+++++|.+|..+|++++|+.+|+++++++|.
T Consensus 219 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------------------------------------ 262 (336)
T 1p5q_A 219 CNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN------------------------------------ 262 (336)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS------------------------------------
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC------------------------------------
Confidence 99999999999999999999999999999999999998886654
Q ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH-HHHHHHhchhhh
Q 002199 595 SEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEA-IQLCEHTLPVAE 647 (954)
Q Consensus 595 ~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeA-i~~~ekaL~l~p 647 (954)
+..++..++.++..+|++++| ...|.+++....
T Consensus 263 --------------------~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 263 --------------------NKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455667777788888888777 456666665433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-13 Score=147.39 Aligned_cols=204 Identities=11% Similarity=-0.031 Sum_probs=172.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHH-------HHHHHHcCCHHHHHHHHHHH
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNR-------AATRISLGRMREALEDCMMA 518 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~l-------A~~y~~lg~~eeAl~~~~kA 518 (954)
+....++..|.-+ ..+++..|+.+|.+++.++|... .+|..+ +.++..++++.+++..++++
T Consensus 5 ~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~----------Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~ 73 (282)
T 4f3v_A 5 DRLASLFESAVSM-LPMSEARSLDLFTEITNYDESAC----------DAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGS 73 (282)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHT
T ss_pred HHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhh----------HHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777776 68999999999999999999997 999999 89999999999999999999
Q ss_pred HhcCCCcH---------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHH
Q 002199 519 ATVDPNFL---------------------KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQ 577 (954)
Q Consensus 519 Lel~P~~~---------------------~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~ 577 (954)
+.+.|... .+++.+|.++...|+|++|.+.|..++...|..
T Consensus 74 l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~------------------ 135 (282)
T 4f3v_A 74 VQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEH------------------ 135 (282)
T ss_dssp TTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH------------------
T ss_pred hcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch------------------
Confidence 99887643 344558899999999999999999998888864
Q ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCC-C-HHHHHHHHHHHHHccCHHHHHHHHHHhchhh--hhhhhhh
Q 002199 578 KVTEYINCSGKLLEQKTSEAASSALERINEALSISSC-S-EKLLEMKADALYMLRKYEEAIQLCEHTLPVA--EKNFASV 653 (954)
Q Consensus 578 ~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~-~-~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~--p~~~~~~ 653 (954)
+ ..+.++..++..++|+ +|+..|..++...+. . ..+++++|.++..+|++++|+..|++++... |...
T Consensus 136 -~-~~~~~a~l~~~~~r~~---dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~--- 207 (282)
T 4f3v_A 136 -L-VAWMKAVVYGAAERWT---DVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACA--- 207 (282)
T ss_dssp -H-HHHHHHHHHHHTTCHH---HHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTH---
T ss_pred -H-HHHHHHHHHHHcCCHH---HHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcccc---
Confidence 3 5678888999999999 677777777664322 1 4589999999999999999999999998543 3211
Q ss_pred hhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002199 654 LADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSI 699 (954)
Q Consensus 654 ~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~ 699 (954)
..+++.+|.++..+|+.++|...|++++..+|.
T Consensus 208 -------------~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 208 -------------RAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp -------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 126788999999999999999999999999997
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.45 E-value=7.8e-14 Score=158.90 Aligned_cols=281 Identities=11% Similarity=0.019 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF 525 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~ 525 (954)
.....+...+..+...|+|++|+.+|+.+++..++ + .+...++.+|.++|++.++.+.++. |+.
T Consensus 59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~----------~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~ 122 (449)
T 1b89_A 59 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-S----------YVETELIFALAKTNRLAELEEFING-----PNN 122 (449)
T ss_dssp -------------------------------------------------------------CHHHHTTTTTC-----C--
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-c----------hhHHHHHHHHHHhCCHHHHHHHHcC-----CcH
Confidence 35568889999999999999999999999986544 3 6788999999999999998877752 543
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHH
Q 002199 526 LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERI 605 (954)
Q Consensus 526 ~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l 605 (954)
.+|..+|..+...|+|++|+.+|.++ ..+..++..+...|+++ +|++.+
T Consensus 123 -~a~~~IGd~~~~~g~yeeA~~~Y~~a---------------------------~n~~~LA~~L~~Lg~yq---~AVea~ 171 (449)
T 1b89_A 123 -AHIQQVGDRCYDEKMYDAAKLLYNNV---------------------------SNFGRLASTLVHLGEYQ---AAVDGA 171 (449)
T ss_dssp ---------------CTTTHHHHHHHT---------------------------TCHHHHHHHHHTTTCHH---HHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHh---------------------------hhHHHHHHHHHHhccHH---HHHHHH
Confidence 59999999999999999999999976 23788899999999999 677878
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHH
Q 002199 606 NEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEV 685 (954)
Q Consensus 606 ~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~ee 685 (954)
.++ .++..|.....++...|+++.|..+... |...|+.. ..+...|...|++++
T Consensus 172 ~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l--------------------~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 172 RKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADEL--------------------EELINYYQDRGYFEE 225 (449)
T ss_dssp HHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHH--------------------HHHHHHHHHTTCHHH
T ss_pred HHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhH--------------------HHHHHHHHHCCCHHH
Confidence 887 4788999999999999999999877765 44666542 236778999999999
Q ss_pred HHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhhccCCch-----hh
Q 002199 686 ALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEA--FKSGRYTEAVEHYTVALSTNIESRP-----FA 758 (954)
Q Consensus 686 Al~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~--~~~g~~eeAi~~y~kAL~l~~~~~p-----~~ 758 (954)
|+.++++++.+++.+.. .+..+|.+| ++-++..++++.|...+.+. + ..
T Consensus 226 ai~lLe~aL~le~ah~~--------------------~ftel~il~~ky~p~k~~ehl~~~~~~ini~----k~~~~~~~ 281 (449)
T 1b89_A 226 LITMLEAALGLERAHMG--------------------MFTELAILYSKFKPQKMREHLELFWSRVNIP----KVLRAAEQ 281 (449)
T ss_dssp HHHHHHHHTTSTTCCHH--------------------HHHHHHHHHHTTCHHHHHHHHHHHSTTSCHH----HHHHHHHT
T ss_pred HHHHHHHHhCCcHHHHH--------------------HHHHHHHHHHhcCHHHHHHHHHHHHHHhcCc----HHHHHHHH
Confidence 99999999999876633 333344444 45567778888887776665 5 66
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhh
Q 002199 759 AICFCNRAAALQALGQIADAIADCSLAMAL------------DENYTKAVSRRAALHEMIRDYTQAASDLQRLV--SILE 824 (954)
Q Consensus 759 a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l------------dP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL--~l~p 824 (954)
+.+|..+..+|...++|+.|+...-..... .+.+.+.++.....|. +....++.++..++ .+++
T Consensus 282 ~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~ 359 (449)
T 1b89_A 282 AHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDH 359 (449)
T ss_dssp TTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCH
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCc
Confidence 778999999999999999998866554322 4677888888777776 66677788888888 6655
Q ss_pred h
Q 002199 825 N 825 (954)
Q Consensus 825 ~ 825 (954)
.
T Consensus 360 ~ 360 (449)
T 1b89_A 360 T 360 (449)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.5e-13 Score=125.63 Aligned_cols=103 Identities=24% Similarity=0.345 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY------ 792 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~------ 792 (954)
..+.++.++|+.++..|+|++|+.+|++||.++ |.++.+|+++|.+|..+|++++|+.+|+++|+++|++
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~----p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD----PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 446678899999999999999999999999999 7889999999999999999999999999999998765
Q ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 793 -TKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 793 -~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
..+++.+|.++..+|++++|+.+|+++|++.|+
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 468999999999999999999999999998654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.9e-12 Score=130.27 Aligned_cols=175 Identities=16% Similarity=0.027 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC----C
Q 002199 466 EAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLG----E 541 (954)
Q Consensus 466 eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG----~ 541 (954)
+|+..|+++.+. .++ .+++++|.+|...+++++|+..|+++++. .++.+++.||.+|.. + +
T Consensus 4 eA~~~~~~aa~~--g~~----------~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~ 68 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDR----------RAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQAD 68 (212)
T ss_dssp CTTHHHHHHHHT--TCH----------HHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCC
T ss_pred hHHHHHHHHHHC--CCH----------HHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCC
Confidence 567777777765 343 77778888888888888888888887764 467778888887776 5 6
Q ss_pred HHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 002199 542 IENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEM 621 (954)
Q Consensus 542 ~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~ 621 (954)
+++|+.+|+++++ +.++.+++.
T Consensus 69 ~~~A~~~~~~A~~----------------------------------------------------------~g~~~a~~~ 90 (212)
T 3rjv_A 69 YPQARQLAEKAVE----------------------------------------------------------AGSKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHH----------------------------------------------------------TTCHHHHHH
T ss_pred HHHHHHHHHHHHH----------------------------------------------------------CCCHHHHHH
Confidence 7777777766643 235566777
Q ss_pred HHHHHHH----ccCHHHHHHHHHHhchhhhh--hhhhhhhccCcchhhHHHHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 002199 622 KADALYM----LRKYEEAIQLCEHTLPVAEK--NFASVLADNGSVTYSLARLWRWRLISKSYFC----IGKLEVALDLLQ 691 (954)
Q Consensus 622 lA~~~~~----lg~~eeAi~~~ekaL~l~p~--~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~----lG~~eeAl~~l~ 691 (954)
+|.+|.. .+++++|+.+|+++++..+. ... +++.||.+|.. .+++++|+.+|+
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~-----------------a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVD-----------------AQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHH-----------------HHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHH-----------------HHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7877776 77888888888888887762 111 56777887777 667777777777
Q ss_pred HHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhhc
Q 002199 692 KLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKS-G-----RYTEAVEHYTVALSTN 751 (954)
Q Consensus 692 kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~-g-----~~eeAi~~y~kAL~l~ 751 (954)
+++.+ +.+.. ++.++|.+|..- + ++++|+.+|++|+...
T Consensus 154 ~A~~~-~~~~~--------------------a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL-SRTGY--------------------AEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT-SCTTH--------------------HHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc-CCCHH--------------------HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77665 22211 344566666543 2 6677777777766654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.44 E-value=4.5e-12 Score=123.89 Aligned_cols=109 Identities=23% Similarity=0.361 Sum_probs=103.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 441 TAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT 520 (954)
Q Consensus 441 ~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe 520 (954)
.......+..|..+|..++..|+|++|+.+|++++...|.+. .++.++|.++..+|++++|+..++++++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~----------~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 75 (166)
T 1a17_A 6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA----------IYYGNRSLAYLRTECYGYALGDATRAIE 75 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh----------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567889999999999999999999999999999999986 8999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 521 VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 521 l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
++|.+..+++.+|.++..+|++++|+.+|++++.+.|.+
T Consensus 76 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 76 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114 (166)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999998864
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.43 E-value=6.5e-12 Score=122.77 Aligned_cols=136 Identities=15% Similarity=0.142 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002199 666 RLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYT 745 (954)
Q Consensus 666 ~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~ 745 (954)
....+..+|.+++..|++++|+..|++++.+.|.+.. .+..+|.++...|++++|+.+|+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------------~~~~~a~~~~~~~~~~~A~~~~~ 71 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI--------------------YYGNRSLAYLRTECYGYALGDAT 71 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--------------------HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH--------------------HHHHHHHHHHHcCCHHHHHHHHH
Confidence 3447889999999999999999999999999887633 56678999999999999999999
Q ss_pred HHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHHHh
Q 002199 746 VALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRR--AALHEMIRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 746 kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~l--A~ly~~lg~~eeAi~~~ekAL~l~ 823 (954)
+++.++ |....+++++|.++..+|++++|+.+|++++.++|.+..++..+ +..+...|++++|+..++++..+.
T Consensus 72 ~a~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 72 RAIELD----KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 999998 77789999999999999999999999999999999999888554 555889999999999999998886
Q ss_pred hh
Q 002199 824 EN 825 (954)
Q Consensus 824 p~ 825 (954)
+.
T Consensus 148 ~~ 149 (166)
T 1a17_A 148 DS 149 (166)
T ss_dssp HH
T ss_pred cc
Confidence 43
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-12 Score=138.87 Aligned_cols=249 Identities=13% Similarity=0.098 Sum_probs=180.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHh
Q 002199 500 ATRISLGRMREALEDCMMAATVDPNF-LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQK 578 (954)
Q Consensus 500 ~~y~~lg~~eeAl~~~~kALel~P~~-~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~ 578 (954)
.-++.+|+|..++....+ +.|.. ....+.+.++|+.+|++.... .-.|.
T Consensus 21 kn~fy~G~yq~~i~e~~~---~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~~~~~-------------------- 70 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEK---FSKVTDNTLLFYKAKTLLALGQYQSQD-------PTSKL-------------------- 70 (310)
T ss_dssp HHHHTTTCHHHHTHHHHT---SSCCCCHHHHHHHHHHHHHTTCCCCCC-------SSSTT--------------------
T ss_pred HHHHHhhHHHHHHHHHHh---cCccchHHHHHHHHHHHHHcCCCccCC-------CCCHH--------------------
Confidence 345678999999986543 33332 456777889999999987421 11110
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhh--hhhhhhhhc
Q 002199 579 VTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAE--KNFASVLAD 656 (954)
Q Consensus 579 ~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p--~~~~~~~~~ 656 (954)
...+.....++. + .|+..+++.+...+.....+..+|.++...|++++|+..+.+.|...| .+.+
T Consensus 71 -~~a~~~la~~~~-~------~a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~le----- 137 (310)
T 3mv2_B 71 -GKVLDLYVQFLD-T------KNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTE----- 137 (310)
T ss_dssp -HHHHHHHHHHHT-T------TCCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHH-----
T ss_pred -HHHHHHHHHHhc-c------cHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHH-----
Confidence 001111112222 1 267778888777666677778999999999999999999999988876 3433
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-
Q 002199 657 NGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSG- 735 (954)
Q Consensus 657 ~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g- 735 (954)
++..++.+|+.+|+++.|.+.++++.+.+|+... ....+......+.+.+..|
T Consensus 138 ------------a~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~--------------~~d~~l~~Laea~v~l~~g~ 191 (310)
T 3mv2_B 138 ------------LLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVS--------------GDNEMILNLAESYIKFATNK 191 (310)
T ss_dssp ------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHH--------------HHHHHHHHHHHHHHHHHHTC
T ss_pred ------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccc--------------cchHHHHHHHHHHHHHHhCC
Confidence 5678899999999999999999999887762000 0001122223354456556
Q ss_pred -CHHHHHHHHHHHHhhccCCchh--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHH
Q 002199 736 -RYTEAVEHYTVALSTNIESRPF--AAICFCNRAAALQALGQIADAIADCSLAMAL----------DENYTKAVSRRAAL 802 (954)
Q Consensus 736 -~~eeAi~~y~kAL~l~~~~~p~--~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l----------dP~~~~al~~lA~l 802 (954)
++.+|+..|+++.... |. ....+++ +++.+|++++|...++.++++ +|+++.++.+++.+
T Consensus 192 ~~~q~A~~~f~El~~~~----p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l 264 (310)
T 3mv2_B 192 ETATSNFYYYEELSQTF----PTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITL 264 (310)
T ss_dssp STTTHHHHHHHHHHTTS----CSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC----CCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHH
Confidence 9999999999988776 43 3344444 899999999999999988876 58899999999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 803 HEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 803 y~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
...+|+ +|.++++++.++.|++
T Consensus 265 ~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 265 ALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHTTC--TTHHHHHHHHHTTCCC
T ss_pred HHHhCh--HHHHHHHHHHHhCCCC
Confidence 999998 8999999999994443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.3e-12 Score=126.31 Aligned_cols=104 Identities=35% Similarity=0.402 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002199 720 ALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRR 799 (954)
Q Consensus 720 ~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~l 799 (954)
.+..+..+|.+++..|+|++|+.+|++++.++ |.++.+|+++|.+|..+|++++|+.+|++++.++|+++.+|+.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA----PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35577889999999999999999999999999 77899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 800 AALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 800 A~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
|.+|..+|++++|+.+|++++++.|++.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence 9999999999999999999999966543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-10 Score=139.68 Aligned_cols=343 Identities=6% Similarity=-0.062 Sum_probs=236.2
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGR---MREALEDCMMAA 519 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~---~eeAl~~~~kAL 519 (954)
..|.....|..+.......+.+..|...|++++...|... .+|...+...+..++ ++.+...|+++|
T Consensus 61 ~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~----------~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 61 EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMA----------NIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCH----------HHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 3456778888888888888999999999999999999987 888888888888888 999999999999
Q ss_pred hcCC--CcHHHHHHHHHHHHHcCCH----HH----HHHHHHHHHhh----chhhhhhHHHHHH-----------------
Q 002199 520 TVDP--NFLKVYMRAAKCHLVLGEI----EN----AQHYYHKLLNS----AAAVCLDRRITIE----------------- 568 (954)
Q Consensus 520 el~P--~~~~a~~~LA~iy~~lG~~----ee----Al~~yekaL~l----~P~~~~~~~~~~e----------------- 568 (954)
...| ..+..|..........++. ++ ....|++|+.. ++..........+
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 8883 4566666655544444433 22 33666666653 2211100000000
Q ss_pred --HHHHHHHHHh-------------------------------HHHHHHHHHHHH-------------------------
Q 002199 569 --AADGLQKAQK-------------------------------VTEYINCSGKLL------------------------- 590 (954)
Q Consensus 569 --a~~~l~~~~~-------------------------------~~~~l~~a~~ll------------------------- 590 (954)
+...+.++.. ....+..+...+
T Consensus 211 ~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~ 290 (679)
T 4e6h_A 211 QYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESN 290 (679)
T ss_dssp HHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTT
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhcc
Confidence 0000000000 000000001100
Q ss_pred ---------------------HhcCh---H---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHh
Q 002199 591 ---------------------EQKTS---E---AASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAI-QLCEHT 642 (954)
Q Consensus 591 ---------------------~~g~~---~---~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi-~~~eka 642 (954)
...+. + ........|++++...|..+.+|+..|..+...|+.++|+ .+|+++
T Consensus 291 ~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rA 370 (679)
T 4e6h_A 291 LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLG 370 (679)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 00000 0 0113456799999999999999999999999999999997 999999
Q ss_pred chhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------CCCcchhhHHHHHH
Q 002199 643 LPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVG-----------SISDRYGSEILESS 711 (954)
Q Consensus 643 L~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~-----------p~~~~~~~~~l~~~ 711 (954)
+...|.+.. .|+.++.++...|+++.|...|++++... |.... ..
T Consensus 371 i~~~P~s~~-----------------Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~-------~~ 426 (679)
T 4e6h_A 371 QQCIPNSAV-----------------LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES-------AI 426 (679)
T ss_dssp HHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH-------HH
T ss_pred HHhCCCCHH-----------------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh-------hh
Confidence 999887632 56778889999999999999999998752 21100 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCC
Q 002199 712 MSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALG-QIADAIADCSLAMALDE 790 (954)
Q Consensus 712 ~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg-~~eeAi~~~ekAL~ldP 790 (954)
..+ .......|...+....+.+..+.|...|.+|+...+ +....+|...|.+....+ +++.|...|+.+|+..|
T Consensus 427 ~~~--~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~---~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p 501 (679)
T 4e6h_A 427 NQL--KSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK---LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA 501 (679)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG---GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred hhh--ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 000 111233566677777888999999999999998731 334556666677776665 48999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 791 NYTKAVSRRAALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 791 ~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
+.+..+...+......|+.+.|...|++++...|
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 9999998999999999999999999999999876
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.8e-12 Score=123.99 Aligned_cols=103 Identities=19% Similarity=0.237 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
...+..+|..++..|+|++|+.+|++++.++ |.++.+|+.+|.+|..+|++++|+..|++++.++|+++.+++.+|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 93 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD----HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 4467789999999999999999999999999 788999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 801 ALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 801 ~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
.+|..+|++++|+.+|++++++.|++.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999977543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.5e-12 Score=138.97 Aligned_cols=189 Identities=11% Similarity=-0.003 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
......+...+..++..|+|++|+.+|++++...+..+. .......+..+|.++...+++++|+..|++++.+.+.
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~ 147 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE----FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHH----HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChH----HHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc
Confidence 455667777889999999999999999999998776541 1112345667999999999999999999999997543
Q ss_pred c------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHH
Q 002199 525 F------LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAA 598 (954)
Q Consensus 525 ~------~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a 598 (954)
. ..++..+|.+|..+|++++|+.+|+++++......
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-------------------------------------- 189 (293)
T 3u3w_A 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-------------------------------------- 189 (293)
T ss_dssp CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS--------------------------------------
T ss_pred cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--------------------------------------
Confidence 2 45799999999999999999999999987422100
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHH
Q 002199 599 SSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYF 678 (954)
Q Consensus 599 ~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~ 678 (954)
...+....++.++|.+|..+|+|++|+.++++++++.+.... ......+++.+|.+|.
T Consensus 190 -----------~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~lg~~~~ 247 (293)
T 3u3w_A 190 -----------DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS-----------MALIGQLYYQRGECLR 247 (293)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB-----------CTTHHHHHHHHHHHHH
T ss_pred -----------cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc-----------HHHHHHHHHHHHHHHH
Confidence 001123457889999999999999999999999999875422 1111237889999999
Q ss_pred HcC-CHHHHHHHHHHHHhhC
Q 002199 679 CIG-KLEVALDLLQKLEQVG 697 (954)
Q Consensus 679 ~lG-~~eeAl~~l~kal~l~ 697 (954)
.+| .+++|+.+|++++.+.
T Consensus 248 ~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 248 KLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HTTCCHHHHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHH
Confidence 999 5799999999998763
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=8.3e-13 Score=135.00 Aligned_cols=177 Identities=10% Similarity=0.055 Sum_probs=125.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002199 620 EMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSI 699 (954)
Q Consensus 620 ~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~ 699 (954)
...+.....+++++.|.+.+.......+.. ...+..+|.+++..|++++|+.+|++++.+.|.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~ 70 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQS-----------------AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIH 70 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHH-----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHH-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 344556667777887777776555444333 226788999999999999999999999999887
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHH
Q 002199 700 SDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAI 779 (954)
Q Consensus 700 ~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi 779 (954)
++......+.. .........+.++|.+++..|+|++|+.+|++++.++ |....+++++|.+|..+|++++|+
T Consensus 71 ~~~~~~~~~~~----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~~~~~~A~ 142 (198)
T 2fbn_A 71 TEEWDDQILLD----KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID----KNNVKALYKLGVANMYFGFLEEAK 142 (198)
T ss_dssp CTTCCCHHHHH----HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred ccccchhhHHH----HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHcccHHHHH
Confidence 65322110000 0111124677889999999999999999999999998 778899999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHH-HHHHHHHH
Q 002199 780 ADCSLAMALDENYTKAVSRRAALHEMIRDYTQAA-SDLQRLVS 821 (954)
Q Consensus 780 ~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi-~~~ekAL~ 821 (954)
.+|++++.++|++..++..++.++..++++.++. ..|.+++.
T Consensus 143 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 143 ENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998888 45555544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.41 E-value=6.4e-12 Score=117.04 Aligned_cols=134 Identities=25% Similarity=0.376 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 002199 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKV 528 (954)
Q Consensus 449 e~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a 528 (954)
++|..+|..++..|++++|+.+|++++...|.+. .++..+|.++...|++++|+..+++++.+.|....+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 71 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA----------EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch----------hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHH
Confidence 4677888888888888888888888888888775 778888888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Q 002199 529 YMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEA 608 (954)
Q Consensus 529 ~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~ka 608 (954)
++.+|.++...|++++|+..|++++...|
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------------------------------------------------- 100 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEYYQKALELDP--------------------------------------------------- 100 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCT---------------------------------------------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC---------------------------------------------------
Confidence 88888888888888888888877766544
Q ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhh
Q 002199 609 LSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEK 648 (954)
Q Consensus 609 L~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~ 648 (954)
....++..+|.++...|++++|+..+++++...|.
T Consensus 101 -----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 101 -----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp -----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred -----CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 34445666777777777777777777777777664
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.7e-12 Score=131.69 Aligned_cols=131 Identities=14% Similarity=0.039 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
.++.+|.+++..|++++|+..|++++ .| . ...+..+|.++...|++++|+.+|++++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~--------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al 64 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-H--------------------SRICFNIGCMYTILKNMTEAEKAFTRSI 64 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-C--------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-C--------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57789999999999999999999984 22 1 2367789999999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhcCHHHH
Q 002199 749 STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYT----------------KAVSRRAALHEMIRDYTQA 812 (954)
Q Consensus 749 ~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~----------------~al~~lA~ly~~lg~~eeA 812 (954)
.++ |....+++++|.+|..+|++++|+..|++++++.|.+. .+++.+|.+|..+|++++|
T Consensus 65 ~~~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 140 (213)
T 1hh8_A 65 NRD----KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 140 (213)
T ss_dssp HHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhC----ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence 998 77889999999999999999999999999999888766 9999999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q 002199 813 ASDLQRLVSILENQ 826 (954)
Q Consensus 813 i~~~ekAL~l~p~~ 826 (954)
+.+|++++++.|+.
T Consensus 141 ~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 141 EEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHTTCCSG
T ss_pred HHHHHHHHHcCccc
Confidence 99999999997654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=9.9e-12 Score=115.53 Aligned_cols=109 Identities=28% Similarity=0.413 Sum_probs=103.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 441 TAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT 520 (954)
Q Consensus 441 ~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe 520 (954)
....+..+..+..+|..++..|+|++|+.+|++++...|.+. .++..+|.++..+|++++|+..+++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 74 (131)
T 2vyi_A 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA----------VYFCNRAAAYSKLGNYAGAVQDCERAIC 74 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH----------HHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence 345678899999999999999999999999999999999986 8999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 521 VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 521 l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
++|.+..+++.+|.++..+|++++|+..|++++.+.|.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 75 IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred cCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence 999999999999999999999999999999999999875
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=6.7e-13 Score=158.80 Aligned_cols=195 Identities=10% Similarity=0.022 Sum_probs=171.5
Q ss_pred HHHHcCCH-HHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCc
Q 002199 457 QAYKNNNL-TEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGR----------MREALEDCMMAATVDPNF 525 (954)
Q Consensus 457 ~~~~~g~y-~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~----------~eeAl~~~~kALel~P~~ 525 (954)
...+.|+| ++|+..|+++|.++|++. .+|+.++.++..+++ +++|++.++++++.+|++
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~nP~~~----------taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~ 106 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGANPDFA----------TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS 106 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhH----------HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC
Confidence 34456665 577999999999999998 999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-ChHHHHHHH
Q 002199 526 LKVYMRAAKCHLVLG--EIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQK-TSEAASSAL 602 (954)
Q Consensus 526 ~~a~~~LA~iy~~lG--~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g-~~~~a~eAL 602 (954)
..+|..++.++..++ ++++|++.+.++++++|.+ ...|..++..+...+ .++ +++
T Consensus 107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N-------------------~~aW~~R~~~l~~l~~~~~---~el 164 (567)
T 1dce_A 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-------------------FHCWDYRRFVAAQAAVAPA---EEL 164 (567)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHTCCCHH---HHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc-------------------ccHHHHHHHHHHHcCCChH---HHH
Confidence 999999999999999 7799999999999999987 556777777777777 666 899
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHc--------------cCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHH
Q 002199 603 ERINEALSISSCSEKLLEMKADALYML--------------RKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLW 668 (954)
Q Consensus 603 ~~l~kaL~~~P~~~~~~~~lA~~~~~l--------------g~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~ 668 (954)
+++.++++.+|.+..+|..++.++..+ +.+++|++++.+++.++|.+..
T Consensus 165 ~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~s----------------- 227 (567)
T 1dce_A 165 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS----------------- 227 (567)
T ss_dssp HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH-----------------
T ss_pred HHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCcc-----------------
Confidence 999999999999999999999999986 6789999999999999998865
Q ss_pred HHHHHHHHHHHcCCHHH------------HHHHHHHHHhhCCCC
Q 002199 669 RWRLISKSYFCIGKLEV------------ALDLLQKLEQVGSIS 700 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~ee------------Al~~l~kal~l~p~~ 700 (954)
+|+.++.++...+++++ |+.+|.+++.+.|..
T Consensus 228 aW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 228 AWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp HHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred HHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 78888999988888766 566677777776653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.8e-12 Score=119.60 Aligned_cols=104 Identities=22% Similarity=0.370 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
+..+..|..+|..++..|+|++|+.+|++++.++|.+. .+|+++|.+++.+|++++|+..|+++++++|+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 75 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA----------VYYTNRALCYLKMQQPEQALADCRRALELDGQ 75 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH----------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence 34578899999999999999999999999999999987 89999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchh
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAA 558 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~ 558 (954)
++.+++.+|.+|..+|++++|+..|++++.+.|+
T Consensus 76 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 76 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 9999999999999999999999999999999987
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.1e-12 Score=118.43 Aligned_cols=109 Identities=27% Similarity=0.419 Sum_probs=103.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 441 TAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT 520 (954)
Q Consensus 441 ~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe 520 (954)
....+....+|+.+|..++..|+|++|+.+|++++...|.+. .++.++|.+|..+|++++|+..|+++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----------~~~~~la~~~~~~~~~~~A~~~~~~a~~ 78 (133)
T 2lni_A 9 SHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA----------KLYSNRAACYTKLLEFQLALKDCEECIQ 78 (133)
T ss_dssp CCSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH----------HHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred CCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----------HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344567788999999999999999999999999999999986 8999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 521 VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 521 l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
++|.+..+++.+|.++..+|++++|+.+|++++.++|.+
T Consensus 79 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 79 LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred hCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999999875
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-11 Score=123.71 Aligned_cols=170 Identities=14% Similarity=0.093 Sum_probs=131.0
Q ss_pred HHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhh
Q 002199 626 LYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGS 705 (954)
Q Consensus 626 ~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~ 705 (954)
++..|++++|+..++.+.. +|.. ...++..+|.+|...|++++|+.++++++.+......
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--- 61 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPAT----------------ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD--- 61 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTT----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---
T ss_pred ccccccHHHHHHHHHHhcC-ChHH----------------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---
Confidence 4568999999995544422 2211 1236888999999999999999999999886433221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc---CCchhhHHHHHHHHHHHHHhcCHHHHHHHH
Q 002199 706 EILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI---ESRPFAAICFCNRAAALQALGQIADAIADC 782 (954)
Q Consensus 706 ~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~---~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ 782 (954)
....+..+..+|.++...|++++|+.+|++++.+.. +.......++.++|.++..+|++++|+.++
T Consensus 62 -----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 130 (203)
T 3gw4_A 62 -----------HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEY 130 (203)
T ss_dssp -----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -----------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 223456788899999999999999999999999832 222367889999999999999999999999
Q ss_pred HHHHHhCC--CC----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 783 SLAMALDE--NY----TKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 783 ekAL~ldP--~~----~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
++++.+.+ .+ ..++..+|.++..+|++++|+.+|++++++....
T Consensus 131 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 131 EKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 99997632 12 3457899999999999999999999999996543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-12 Score=121.19 Aligned_cols=100 Identities=19% Similarity=0.041 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVY 529 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~ 529 (954)
.++.+|..++..|++++|+..|+++++.+|.+. .+|+.+|.++..+|++++|+..|+++++++|++..++
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~----------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 88 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPERE----------EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH 88 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 468899999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 530 MRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 530 ~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
+.+|.+|..+|++++|+..|+++++++|.+
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 89 AALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 999999999999999999999999999864
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-12 Score=140.25 Aligned_cols=195 Identities=9% Similarity=0.079 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccC
Q 002199 579 VTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNG 658 (954)
Q Consensus 579 ~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~ 658 (954)
...+..+|..++..|+++ +|+..|.+++..+|.++.++..+|.+|..+|++++|+..|++++++.|.+..
T Consensus 4 a~~~~~~g~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------- 73 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYP---EAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK------- 73 (281)
T ss_dssp HHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH-------
T ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH-------
Confidence 345778899999999999 8999999999999999999999999999999999999999999999998754
Q ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Q 002199 659 SVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYT 738 (954)
Q Consensus 659 ~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~e 738 (954)
+++.+|.+|..+|++++|+..|++++.++|.+.......+.... ...
T Consensus 74 ----------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~-----------------------~~~ 120 (281)
T 2c2l_A 74 ----------AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL-----------------------RIA 120 (281)
T ss_dssp ----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH-----------------------HHH
T ss_pred ----------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-----------------------HHH
Confidence 78899999999999999999999999998866432211111110 011
Q ss_pred HHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-cCHHHHHHHHH
Q 002199 739 EAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMI-RDYTQAASDLQ 817 (954)
Q Consensus 739 eAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~l-g~~eeAi~~~e 817 (954)
++..+........ +....+...++.++ .|++++|+..++++++++|.+......++.++... +.+++|...|.
T Consensus 121 ~~~~~~~~~~~~~----~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~ 194 (281)
T 2c2l_A 121 KKKRWNSIEERRI----HQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFS 194 (281)
T ss_dssp HHHHHHHHHHTCC----CCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222222233 33444455555544 79999999999999999999998888888887776 77889999998
Q ss_pred HHHHH
Q 002199 818 RLVSI 822 (954)
Q Consensus 818 kAL~l 822 (954)
++.+.
T Consensus 195 ~a~~~ 199 (281)
T 2c2l_A 195 QVDEK 199 (281)
T ss_dssp HSSCT
T ss_pred hhhcc
Confidence 88664
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-12 Score=152.87 Aligned_cols=162 Identities=17% Similarity=0.091 Sum_probs=132.8
Q ss_pred HccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHH
Q 002199 628 MLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEI 707 (954)
Q Consensus 628 ~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~ 707 (954)
.++++++|+..|+.++...|.... .|..+|.+|+..|+|++|+..|++++.+.|.+.......
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~-----------------~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~ 308 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAA-----------------IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKE 308 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHH-----------------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHH
Confidence 455667777777777777766533 788999999999999999999999999998875321110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 708 LESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787 (954)
Q Consensus 708 l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ 787 (954)
........+..+.++|.+|+.+++|++|+.+|+++|.++ |.+..+|+++|.+|..+|++++|+.+|+++++
T Consensus 309 -----~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 309 -----SKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD----SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 111223345678899999999999999999999999999 77899999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 002199 788 LDENYTKAVSRRAALHEMIRDYTQAASD 815 (954)
Q Consensus 788 ldP~~~~al~~lA~ly~~lg~~eeAi~~ 815 (954)
++|++..++..++.++..++++++|...
T Consensus 380 l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 380 VNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp TC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988754
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.36 E-value=5e-12 Score=147.40 Aligned_cols=121 Identities=19% Similarity=0.197 Sum_probs=104.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccccc-----CCchHHHHHHHHHHHHHHcCCHHHHHH
Q 002199 439 SPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGC-----CIKPLVLCYSNRAATRISLGRMREALE 513 (954)
Q Consensus 439 ~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~-----~~~~la~~~~~lA~~y~~lg~~eeAl~ 513 (954)
......|..+..|+.+|+.+++.|+|.+|+.+|++||+++|.+..... .....+.+|+++|.||+.+|+|++|+.
T Consensus 259 ~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 338 (457)
T 1kt0_A 259 MDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE 338 (457)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 344567889999999999999999999999999999999998731000 000124899999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 514 DCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 514 ~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
+|+++|+++|++..+|+++|.+|..+|++++|+.+|+++++++|.+
T Consensus 339 ~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 339 CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999976
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-11 Score=126.19 Aligned_cols=126 Identities=15% Similarity=0.100 Sum_probs=109.2
Q ss_pred hhcCCCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccC------CchHHHHHHHHHHHHHHcCCH
Q 002199 435 QRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCC------IKPLVLCYSNRAATRISLGRM 508 (954)
Q Consensus 435 ~~~~~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~------~~~la~~~~~lA~~y~~lg~~ 508 (954)
+.+.+.....+..+..+..+|..++..|+|++|+.+|.+++.+.|.++..... ......+|.++|.+|+.+|++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 104 (198)
T 2fbn_A 25 SIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDY 104 (198)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred chhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 34555666778889999999999999999999999999999999887511000 000137999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 509 eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
++|+.+|+++++++|.+..+++.+|.+|..+|++++|+..|++++.++|.+.
T Consensus 105 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 156 (198)
T 2fbn_A 105 PKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL 156 (198)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH
Confidence 9999999999999999999999999999999999999999999999999763
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.9e-12 Score=127.06 Aligned_cols=126 Identities=21% Similarity=0.152 Sum_probs=111.9
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCch
Q 002199 677 YFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRP 756 (954)
Q Consensus 677 y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p 756 (954)
+...|++++|+..|++++...|.+.. .+..+|.+++..|++++|+.+|++++.++ |
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~--------------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p 75 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSE--------------------QWALLGEYYLWQNDYSNSLLAYRQALQLR----G 75 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHH--------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHH----C
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHH--------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C
Confidence 45688999999999999999987643 56779999999999999999999999999 6
Q ss_pred hhHHHHHHHHHH-HHHhcCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 757 FAAICFCNRAAA-LQALGQI--ADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 757 ~~a~~~~~lA~~-y~~lg~~--eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.+..++..+|.+ +...|++ ++|+..|++++.++|.+..+++.+|.+|..+|++++|+..|++++++.|.+
T Consensus 76 ~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 678899999999 8899999 999999999999999999999999999999999999999999999996653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.35 E-value=8.8e-11 Score=134.09 Aligned_cols=221 Identities=10% Similarity=-0.019 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCC-------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCI-------KPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~-------~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
.....|..+...|+|++|++.|.++++..|......... .....++.++|.+|..+|++++|++.+.+++.+.
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 356778889999999999999999999998865321111 1134678999999999999999999999999876
Q ss_pred CCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChH
Q 002199 523 PNFL------KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSE 596 (954)
Q Consensus 523 P~~~------~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~ 596 (954)
+... .++..++.++...|++++|+.++++++...+...... .....+..++..+...|+|.
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~~~~~~la~~~~~~g~~~ 152 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF-------------LKHSLSIKLATLHYQKKQYK 152 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS-------------SHHHHHHHHHHHHHHHTCHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH-------------HHHHHHHHHHHHHHHccChH
Confidence 6542 3455678888899999999999999998765431111 12445678899999999999
Q ss_pred HHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHH
Q 002199 597 AASSALERINEALSI------SSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRW 670 (954)
Q Consensus 597 ~a~eAL~~l~kaL~~------~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~ 670 (954)
+|+..+.+++.. .+....++..++.+|..+|+|++|..+|++++.+.+.... ........+
T Consensus 153 ---~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~ 219 (434)
T 4b4t_Q 153 ---DSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC----------PTQTVAELD 219 (434)
T ss_dssp ---HHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC----------CHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC----------chHHHHHHH
Confidence 566666666553 2344778999999999999999999999999988765421 111122356
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 671 RLISKSYFCIGKLEVALDLLQKLEQV 696 (954)
Q Consensus 671 ~~Lg~~y~~lG~~eeAl~~l~kal~l 696 (954)
..+|.++...+++.+|..+|.+++..
T Consensus 220 ~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 220 LMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 77899999999999999999999875
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-11 Score=115.16 Aligned_cols=102 Identities=31% Similarity=0.437 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
+..+..+|..++..|+|++|+.+|++++.++ |..+.+++++|.++..+|++++|+..|++++.++|+++.+++.+|
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC----cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3467789999999999999999999999999 778899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 801 ALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 801 ~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.+|..+|++++|+.+|++++++.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhH
Confidence 99999999999999999999998873
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=7.7e-12 Score=117.99 Aligned_cols=99 Identities=14% Similarity=0.038 Sum_probs=91.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
+..+|..++..|++++|+..|++++.++ |.++.+|+.+|.++..+|++++|+..|+++++++|+++.+++.+|.+|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE----PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4568999999999999999999999999 888999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHhhhh
Q 002199 804 EMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 804 ~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
..+|++++|+..|++++++.|+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-----
T ss_pred HHcCCHHHHHHHHHHHHHhCcCC
Confidence 99999999999999999997764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-11 Score=122.17 Aligned_cols=169 Identities=12% Similarity=-0.000 Sum_probs=129.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCCcHHHHHH
Q 002199 458 AYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT------VDPNFLKVYMR 531 (954)
Q Consensus 458 ~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe------l~P~~~~a~~~ 531 (954)
++..|+|++|+..++.... +|.. .+.++..+|.++..+|++++|+..+++++. ..|....++..
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 71 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPAT---------ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQ 71 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTT---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcC-ChHH---------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4678999999996655433 4432 258999999999999999999999999999 44556789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhc
Q 002199 532 AAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSI 611 (954)
Q Consensus 532 LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~ 611 (954)
+|.+|..+|++++|+.+|++++.+.... ++
T Consensus 72 l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------------------------~~----------------- 101 (203)
T 3gw4_A 72 VGMVERMAGNWDAARRCFLEERELLASL---------------------------------PE----------------- 101 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHS---------------------------------CC-----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHc---------------------------------Cc-----------------
Confidence 9999999999999999999988852210 00
Q ss_pred CC-CCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 612 SS-CSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLL 690 (954)
Q Consensus 612 ~P-~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l 690 (954)
.| ....++..+|.++..+|++++|+..+++++.+.+.... .......+..+|.++...|++++|+.++
T Consensus 102 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~~~A~~~~ 170 (203)
T 3gw4_A 102 DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD-----------QVAIACAFRGLGDLAQQEKNLLEAQQHW 170 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc-----------hHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 00 12346788999999999999999999999988654321 1223346788999999999999999999
Q ss_pred HHHHhhC
Q 002199 691 QKLEQVG 697 (954)
Q Consensus 691 ~kal~l~ 697 (954)
++++.+.
T Consensus 171 ~~al~~~ 177 (203)
T 3gw4_A 171 LRARDIF 177 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998763
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.1e-11 Score=109.33 Aligned_cols=103 Identities=27% Similarity=0.380 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
.+..+..+|..++..|+|++|+.+|++++...|.+. .++..+|.++..+|++++|+..++++++++|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 72 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH----------VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG 72 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH----------HHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH
Confidence 567899999999999999999999999999999986 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
.+++.+|.++..+|++++|+..|+++++++|.+
T Consensus 73 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 73 KGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999976
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=3e-11 Score=116.28 Aligned_cols=145 Identities=13% Similarity=0.088 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002199 666 RLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYT 745 (954)
Q Consensus 666 ~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~ 745 (954)
..+++..+|.+|...|++++|+.++++++.+.+.... ....+..+..+|.++...|++++|+.+|+
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 73 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD--------------KAAERIAYSNLGNAYIFLGEFETASEYYK 73 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC--------------chHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3457889999999999999999999999886442211 22234567889999999999999999999
Q ss_pred HHHhhccC--CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 002199 746 VALSTNIE--SRPFAAICFCNRAAALQALGQIADAIADCSLAMALDE------NYTKAVSRRAALHEMIRDYTQAASDLQ 817 (954)
Q Consensus 746 kAL~l~~~--~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP------~~~~al~~lA~ly~~lg~~eeAi~~~e 817 (954)
+++.+.+. ..+....++.++|.++..+|++++|+.++++++.+.+ ....++..+|.++..+|++++|+.+++
T Consensus 74 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 74 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99988532 2344578899999999999999999999999998742 236788999999999999999999999
Q ss_pred HHHHHhh
Q 002199 818 RLVSILE 824 (954)
Q Consensus 818 kAL~l~p 824 (954)
+++++..
T Consensus 154 ~a~~~~~ 160 (164)
T 3ro3_A 154 KHLEISR 160 (164)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9999854
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.3e-12 Score=125.12 Aligned_cols=130 Identities=12% Similarity=0.055 Sum_probs=104.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 002199 456 NQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKC 535 (954)
Q Consensus 456 ~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~i 535 (954)
..++..|+|++|+..|++++..+|.+. .+|+.+|.+|+..|++++|+..|+++++++|.++.+++.+|.+
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~p~~~----------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 87 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRANPQNS----------EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATV 87 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHCCSCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred hhhhhccCHHHHHHHHHHHHHhCCCcH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 335678899999999999999999987 8999999999999999999999999999999999999999999
Q ss_pred -HHHcCCH--HHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcC
Q 002199 536 -HLVLGEI--ENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSIS 612 (954)
Q Consensus 536 -y~~lG~~--eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~ 612 (954)
+...|++ ++|+..|++++.++|.+ ...++.++..++..|+++ +|+..|.+++.+.
T Consensus 88 l~~~~~~~~~~~A~~~~~~al~~~p~~-------------------~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~ 145 (177)
T 2e2e_A 88 LYYQASQHMTAQTRAMIDKALALDSNE-------------------ITALMLLASDAFMQANYA---QAIELWQKVMDLN 145 (177)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHTTCHH---HHHHHHHHHHHTC
T ss_pred HHHhcCCcchHHHHHHHHHHHHhCCCc-------------------HHHHHHHHHHHHHcccHH---HHHHHHHHHHhhC
Confidence 8899998 99999999998887764 334556666666677766 6666667777777
Q ss_pred CCCHH
Q 002199 613 SCSEK 617 (954)
Q Consensus 613 P~~~~ 617 (954)
|.+..
T Consensus 146 p~~~~ 150 (177)
T 2e2e_A 146 SPRIN 150 (177)
T ss_dssp CTTSC
T ss_pred CCCcc
Confidence 66543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.8e-11 Score=113.33 Aligned_cols=117 Identities=14% Similarity=0.073 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 668 WRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVA 747 (954)
Q Consensus 668 ~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kA 747 (954)
.+|+.+|.+++..|++++|+.+|++++...|.+. ..+..+|.++...|++++|+.+|+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--------------------~~~~~la~~~~~~~~~~~A~~~~~~a 76 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA--------------------KLYSNRAACYTKLLEFQLALKDCEEC 76 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH--------------------HHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--------------------HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3678889999999999999999999998877653 25667888999999999999999999
Q ss_pred HhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 002199 748 LSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRD 808 (954)
Q Consensus 748 L~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~ 808 (954)
+.+. |....+++++|.++..+|++++|+.+|++++.++|.+..++..++.++..+|+
T Consensus 77 ~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 77 IQLE----PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhC----CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9988 66788899999999999999999999999999999999999999999888764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.7e-12 Score=143.61 Aligned_cols=123 Identities=22% Similarity=0.219 Sum_probs=100.0
Q ss_pred cCCCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCC-------chHHHHHHHHHHHHHHcCCHH
Q 002199 437 TVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCI-------KPLVLCYSNRAATRISLGRMR 509 (954)
Q Consensus 437 ~~~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~-------~~la~~~~~lA~~y~~lg~~e 509 (954)
+.......+..+..++.+|+.++..|+|++|+.+|+++|.+.|.+....... .....+|+++|.||+.+|+|+
T Consensus 168 ~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~ 247 (338)
T 2if4_A 168 SDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYD 247 (338)
T ss_dssp TBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 4445566788899999999999999999999999999999999753000000 000138999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 510 EALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 510 eAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
+|+.+|+++|+++|++..+|+++|.+|..+|++++|+.+|+++++++|.+
T Consensus 248 ~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~ 297 (338)
T 2if4_A 248 EAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297 (338)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999999999999988864
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.3e-11 Score=135.31 Aligned_cols=217 Identities=12% Similarity=0.029 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCH-----------------HHHHHHHHHHHHccCHHHHHHHHHHhc
Q 002199 581 EYINCSGKLLEQKTSEAASSALERINEALSISSCSE-----------------KLLEMKADALYMLRKYEEAIQLCEHTL 643 (954)
Q Consensus 581 ~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~-----------------~~~~~lA~~~~~lg~~eeAi~~~ekaL 643 (954)
..+..+..+...|+|. +|++.|.+++...|... .++..+|.+|...|++++|++++.+++
T Consensus 6 ~~l~~a~~l~~~~~y~---eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYN---EAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHHHHHHHTCHH---HHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHCCCHH---HHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3567788889999999 89999999999877542 368899999999999999999999999
Q ss_pred hhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 002199 644 PVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLH 723 (954)
Q Consensus 644 ~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~ 723 (954)
...+.... ..........++.++...|++++|+.++++++...+..... ...+..
T Consensus 83 ~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------~~~~~~ 137 (434)
T 4b4t_Q 83 EYMMQFAK-----------SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV--------------FLKHSL 137 (434)
T ss_dssp HHHHTSCH-----------HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC--------------SSHHHH
T ss_pred HHHHHccc-----------hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc--------------HHHHHH
Confidence 88764321 11111245678889999999999999999998764322221 112345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcc--CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CC----HH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNI--ESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDE---NY----TK 794 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~--~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP---~~----~~ 794 (954)
+..+|.++...|+|.+|+.++++++.... .+.+....++..++.+|..+|++++|...+++++.+.+ .. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 67799999999999999999999987632 34577889999999999999999999999999987742 22 35
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 795 AVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
.+..+|.++...++|++|..+|.++++..+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~ 248 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFESYHN 248 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence 6777899999999999999999999988654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-10 Score=108.56 Aligned_cols=118 Identities=30% Similarity=0.443 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSR 798 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~ 798 (954)
.....+..+|..++..|++++|+.+|++++... |....++..+|.++..+|++++|+..+++++.++|.++.+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN----PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 445677889999999999999999999999998 6778899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhh
Q 002199 799 RAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHL 853 (954)
Q Consensus 799 lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L 853 (954)
+|.++..+|++++|+.+|++++++.|+ +...+..+..++..+
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~-------------~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPD-------------NETYKSNLKIAELKL 127 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCcc-------------chHHHHHHHHHHHHH
Confidence 999999999999999999999999554 444455666665544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.9e-12 Score=149.16 Aligned_cols=105 Identities=24% Similarity=0.379 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
++.+..+..+|..++..|+|++|+.+|++||+++|.+. .+|.++|.+|..+|++++|+..|+++++++|+
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~----------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 72 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA----------IYYGNRSLAYLRTECYGYALGDATRAIELDKK 72 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH----------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 56677888999999999999999999999999999986 99999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
++.+++.+|.+|..+|++++|+..|+++++++|.+
T Consensus 73 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 107 (477)
T 1wao_1 73 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107 (477)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999887753
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-10 Score=111.48 Aligned_cols=151 Identities=16% Similarity=0.164 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 616 EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQ 695 (954)
Q Consensus 616 ~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~ 695 (954)
..++..+|.++...|++++|+..+++++.+.+.... ......++..+|.+|...|++++|+.++++++.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 77 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-----------KAAERIAYSNLGNAYIFLGEFETASEYYKKTLL 77 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-----------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 457889999999999999999999999999875422 222334788899999999999999999999988
Q ss_pred hCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--CCchhhHHHHHHHHHHHHHhc
Q 002199 696 VGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI--ESRPFAAICFCNRAAALQALG 773 (954)
Q Consensus 696 l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~--~~~p~~a~~~~~lA~~y~~lg 773 (954)
+.+.... .......+..+|.++...|++++|+.+|++++.+.+ ...+....++..+|.++..+|
T Consensus 78 ~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 143 (164)
T 3ro3_A 78 LARQLKD--------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 143 (164)
T ss_dssp HHHHTTC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCC--------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHcc
Confidence 6543322 122345677899999999999999999999998743 233566889999999999999
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 002199 774 QIADAIADCSLAMALDEN 791 (954)
Q Consensus 774 ~~eeAi~~~ekAL~ldP~ 791 (954)
++++|+.++++++++...
T Consensus 144 ~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 144 NHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999987543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=9.3e-11 Score=106.89 Aligned_cols=102 Identities=25% Similarity=0.385 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
+..+..+|..++..|++++|+.+|++++... |....++..+|.++..+|++++|+..+++++.++|.++.+++.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD----PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 4567789999999999999999999999998 677889999999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 801 ALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 801 ~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.++..+|++++|+..|++++++.|.+
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999995544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.4e-11 Score=115.20 Aligned_cols=108 Identities=20% Similarity=0.213 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
+..+..++.+|..++..|+|++|+.+|+++++..|.+. ....+|.++|.+|+.+|++++|+..|+++++++|+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ-------DQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccch-------HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence 44578899999999999999999999999999999861 12389999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
+..+++.+|.+|..+|++++|+.+|++++.++|.+
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999975
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.26 E-value=5e-11 Score=110.88 Aligned_cols=103 Identities=23% Similarity=0.292 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 002199 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF 525 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~ 525 (954)
+.+..+..+|..++..|+|++|+.+|++++...|.+. .++.++|.+|..+|++++|+..|++++.+.|.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM----------TYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH----------HHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 4678899999999999999999999999999999986 899999999999999999999999999998877
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchh
Q 002199 526 -------LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAA 558 (954)
Q Consensus 526 -------~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~ 558 (954)
..+++.+|.+|..+|++++|+.+|++++.+.|+
T Consensus 72 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 899999999999999999999999999999874
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.26 E-value=7.2e-11 Score=133.75 Aligned_cols=126 Identities=25% Similarity=0.344 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC------------CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIE------------SRPFAAICFCNRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~------------~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
+..+..+|..++..|+|++|+..|++|+.+.+. ..|....+|+++|.+|..+|++++|+.+|+++|++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 456778999999999999999999999983221 22788999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhhh
Q 002199 789 DENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEED 859 (954)
Q Consensus 789 dP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~a 859 (954)
+|+++.+++.+|.+|..+|++++|+.+|++++++.| ++..++..+..++..++..+++
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-------------~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-------------EDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------TCHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------------CCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999954 4445556777777766655544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.8e-11 Score=110.09 Aligned_cols=104 Identities=10% Similarity=-0.016 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---
Q 002199 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF--- 525 (954)
Q Consensus 449 e~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~--- 525 (954)
+.++.+|..++..|+|++|+..|++++...|.+. ....+++.+|.+++.+|++++|+..|++++.++|++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 75 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGV-------YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKA 75 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST-------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc-------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCccc
Confidence 4578899999999999999999999999999875 123689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 526 LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 526 ~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
+.+++.+|.+|..+|++++|+..|++++...|+.
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 8999999999999999999999999999999976
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-10 Score=104.96 Aligned_cols=103 Identities=24% Similarity=0.382 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
.+..|..+|..++..|++++|+.+|++++...|.+. .++..+|.++...|++++|+..+++++.+.|.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 77 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----------EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH----------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH
Confidence 367899999999999999999999999999999886 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
.+++.+|.++..+|++++|+..|++++.+.|.+
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 78 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999875
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.24 E-value=6.9e-11 Score=133.94 Aligned_cols=119 Identities=22% Similarity=0.200 Sum_probs=100.3
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc------cccCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 442 AAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSET------AGCCIKPLVLCYSNRAATRISLGRMREALEDC 515 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~------~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~ 515 (954)
......+..|..+|..++..|+|++|+.+|++||++.+.... ........+.+|.++|.+|+.+|+|++|+.+|
T Consensus 217 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 296 (370)
T 1ihg_A 217 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSC 296 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 344567788999999999999999999999999994322100 00000112489999999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 516 MMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 516 ~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
+++|+++|++..+++.+|.+|..+|++++|+.+|+++++++|.+.
T Consensus 297 ~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~ 341 (370)
T 1ihg_A 297 LEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341 (370)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999999999999999999763
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-10 Score=124.52 Aligned_cols=188 Identities=14% Similarity=0.037 Sum_probs=148.3
Q ss_pred HHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHH
Q 002199 467 AEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP--NFLKVYMRAAKCHLVLGEIEN 544 (954)
Q Consensus 467 Ai~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P--~~~~a~~~LA~iy~~lG~~ee 544 (954)
|+..|++.+...+... ..+..+|.++...|++++|+..+.+.|..+| ....++..++.+++.+|+.+.
T Consensus 85 a~~~l~~l~~~~~~~~----------~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~ 154 (310)
T 3mv2_B 85 NIEELENLLKDKQNSP----------YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVST 154 (310)
T ss_dssp CCHHHHHTTTTSCCCH----------HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhcCCCCc----------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHH
Confidence 8888888887754444 5678999999999999999999999999997 899999999999999999999
Q ss_pred HHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHhcCCC--CHHHHH
Q 002199 545 AQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQK--TSEAASSALERINEALSISSC--SEKLLE 620 (954)
Q Consensus 545 Al~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g--~~~~a~eAL~~l~kaL~~~P~--~~~~~~ 620 (954)
|.+.++++.+.+|+.... -..+...+..++..+..| ++. +|+..|+++....|. ...+++
T Consensus 155 A~k~l~~~~~~~~d~~~~-------------~d~~l~~Laea~v~l~~g~~~~q---~A~~~f~El~~~~p~~~~~~lLl 218 (310)
T 3mv2_B 155 ASTIFDNYTNAIEDTVSG-------------DNEMILNLAESYIKFATNKETAT---SNFYYYEELSQTFPTWKTQLGLL 218 (310)
T ss_dssp HHHHHHHHHHHSCHHHHH-------------HHHHHHHHHHHHHHHHHTCSTTT---HHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHHhcCcccccc-------------chHHHHHHHHHHHHHHhCCccHH---HHHHHHHHHHHhCCCcccHHHHH
Confidence 999999999988830000 001223444454455555 777 789999999888886 333444
Q ss_pred HHHHHHHHccCHHHHHHHHHHhchhhh----------hhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 621 MKADALYMLRKYEEAIQLCEHTLPVAE----------KNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLL 690 (954)
Q Consensus 621 ~lA~~~~~lg~~eeAi~~~ekaL~l~p----------~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l 690 (954)
. +++.+|++++|...++.+++..| ++.. ++.++..+...+|+ +|.+++
T Consensus 219 n---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~-----------------~LaN~i~l~~~lgk--~a~~l~ 276 (310)
T 3mv2_B 219 N---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT-----------------FLANQITLALMQGL--DTEDLT 276 (310)
T ss_dssp H---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH-----------------HHHHHHHHHHHTTC--TTHHHH
T ss_pred H---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH-----------------HHHHHHHHHHHhCh--HHHHHH
Confidence 3 89999999999999998888754 3433 45567777778887 899999
Q ss_pred HHHHhhCCCCcc
Q 002199 691 QKLEQVGSISDR 702 (954)
Q Consensus 691 ~kal~l~p~~~~ 702 (954)
+++.+..|.++-
T Consensus 277 ~qL~~~~P~hp~ 288 (310)
T 3mv2_B 277 NQLVKLDHEHAF 288 (310)
T ss_dssp HHHHHTTCCCHH
T ss_pred HHHHHhCCCChH
Confidence 999999998865
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.22 E-value=7.6e-09 Score=125.71 Aligned_cols=352 Identities=9% Similarity=0.067 Sum_probs=233.5
Q ss_pred hhhHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCH----HHH---
Q 002199 442 AAFQETCEMWRLRGNQAYKNNN---LTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM----REA--- 511 (954)
Q Consensus 442 ~~~~~~ae~l~~~G~~~~~~g~---y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~----eeA--- 511 (954)
...|.....|.......++.++ ++.+..+|++||...|..+. +.+|..........++. +++
T Consensus 94 ~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~s--------v~LW~~Yl~f~~~~~~~~~~~~~~r~~ 165 (679)
T 4e6h_A 94 DRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNND--------LSLWLSYITYVRKKNDIITGGEEARNI 165 (679)
T ss_dssp HHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCC--------HHHHHHHHHHHHHHSCSTTTHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHHHHhcccccccchhHHH
Confidence 3445556778888888888888 99999999999999942111 25666666555555543 333
Q ss_pred -HHHHHHHHh---c-CCCcHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhhchhhhhh---------------
Q 002199 512 -LEDCMMAAT---V-DPNFLKVYMRAAKCHL---------VLGEIENAQHYYHKLLNSAAAVCLD--------------- 562 (954)
Q Consensus 512 -l~~~~kALe---l-~P~~~~a~~~LA~iy~---------~lG~~eeAl~~yekaL~l~P~~~~~--------------- 562 (954)
.+.|++||. . ++....+|........ ..++++.+...|+++|.+ |.....
T Consensus 166 vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~ 244 (679)
T 4e6h_A 166 VIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQ 244 (679)
T ss_dssp HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCc
Confidence 467777776 3 6666666655554432 234567788888888763 311000
Q ss_pred ---HHHHHHHHH-------H------------------------------------------------------------
Q 002199 563 ---RRITIEAAD-------G------------------------------------------------------------ 572 (954)
Q Consensus 563 ---~~~~~ea~~-------~------------------------------------------------------------ 572 (954)
...+.+... .
T Consensus 245 ~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~ 324 (679)
T 4e6h_A 245 LTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLH 324 (679)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHH
T ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhh
Confidence 000000000 0
Q ss_pred -------HHHHHh-----HHHHHHHHHHHHHhcChHHHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 002199 573 -------LQKAQK-----VTEYINCSGKLLEQKTSEAASSAL-ERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLC 639 (954)
Q Consensus 573 -------l~~~~~-----~~~~l~~a~~ll~~g~~~~a~eAL-~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ 639 (954)
+.++.. ...|+..+..+...++.+ +|+ ..|.+++...|.+..+++.++.+....|++++|..+|
T Consensus 325 ~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~---~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iy 401 (679)
T 4e6h_A 325 KARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDS---TVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTI 401 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCT---THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 000000 122333334444455555 676 8899999999999999999999999999999999999
Q ss_pred HHhchhhhhhhhhhhhccC-----cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHH
Q 002199 640 EHTLPVAEKNFASVLADNG-----SVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSL 714 (954)
Q Consensus 640 ekaL~l~p~~~~~~~~~~~-----~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l 714 (954)
++++...+........... ...........|...+.+..+.|..+.|...|.+|++..|....
T Consensus 402 ek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~------------ 469 (679)
T 4e6h_A 402 LSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP------------ 469 (679)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT------------
T ss_pred HHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh------------
Confidence 9999875422210000000 00000111125667778888899999999999999886221111
Q ss_pred HHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--
Q 002199 715 AGTVRALLHHKSAGNEAFKSG-RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDEN-- 791 (954)
Q Consensus 715 ~~~~~~~~~~~~lG~~~~~~g-~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~-- 791 (954)
..+...+.+.+..+ +++.|...|+.+++.. |..+.++...+......|+.+.|...|++|+...|+
T Consensus 470 -------~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~----p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 470 -------DIYLENAYIEYHISKDTKTACKVLELGLKYF----ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp -------HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred -------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC----CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 12223444555554 5999999999999998 667778888888888999999999999999999883
Q ss_pred -CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 792 -YTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 792 -~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
....|......-...|+.+.+...++++++..|++..
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 5677777788888999999999999999999887543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.22 E-value=3.5e-10 Score=103.99 Aligned_cols=115 Identities=25% Similarity=0.363 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
.|+.+|.++...|++++|+..|++++...|.+.. .+..+|.++...|++++|+.+|++++
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------------~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE--------------------AWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH--------------------HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6778899999999999999999999988775532 45668899999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 002199 749 STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIR 807 (954)
Q Consensus 749 ~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg 807 (954)
.+. |....++..+|.++..+|++++|+..|++++.++|.+..++..++.++..+|
T Consensus 71 ~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 71 ELD----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhC----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 988 6677889999999999999999999999999999999999999999887764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-11 Score=110.87 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN-- 524 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~-- 524 (954)
.+..+..+|..++..|++++|+.+|+++++..|.+. .++.++|.++..+|++++|+..|+++++++|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~ 74 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES----------KYWLMKGKALYNLERYEEAVDCYNYVINVIEDEY 74 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTT
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH----------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccc
Confidence 456688899999999999999999999999999986 89999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhchhh
Q 002199 525 FLKVYMRAAKCHLVL-GEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 525 ~~~a~~~LA~iy~~l-G~~eeAl~~yekaL~l~P~~ 559 (954)
+..+++.+|.++..+ |++++|++++++++...|..
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 75 NKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp CHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 999999999999999 99999999999999988854
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-10 Score=110.40 Aligned_cols=105 Identities=33% Similarity=0.365 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
+..+..+|..++..|+|++|+.+|++++.+.|.. +....++.++|.+|..+|++++|+.+|++++.++|.++.+++.+|
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATP-QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3467778999999999999999999999998421 223899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 801 ALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 801 ~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
.+|..+|++++|+.+|++++++.|++
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999995544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.1e-10 Score=106.25 Aligned_cols=103 Identities=13% Similarity=0.069 Sum_probs=94.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY---TKAVSRRA 800 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~---~~al~~lA 800 (954)
++.+|..++..|+|++|+..|++++...|.+ +....+++.+|.++..+|++++|+..|++++.++|++ +.+++.+|
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNG-VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 5568999999999999999999999998643 4445899999999999999999999999999999999 89999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 801 ALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 801 ~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
.+|..+|++++|+..|++++++.|+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 999999999999999999999976554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-10 Score=106.51 Aligned_cols=100 Identities=22% Similarity=0.275 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------H
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY-------T 793 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~-------~ 793 (954)
...+..+|..++..|++++|+.+|++++... |..+.+++++|.++..+|++++|+.+|++++.+.|.+ .
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD----PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHH
Confidence 4567789999999999999999999999998 6778999999999999999999999999999998877 9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 794 KAVSRRAALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 794 ~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
.+++.+|.+|..+|++++|+.+|++++++.|
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999854
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.6e-11 Score=119.32 Aligned_cols=91 Identities=11% Similarity=0.124 Sum_probs=84.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCcHHH
Q 002199 459 YKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM----------REALEDCMMAATVDPNFLKV 528 (954)
Q Consensus 459 ~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~----------eeAl~~~~kALel~P~~~~a 528 (954)
-+.+.|++|+..|+++++++|.+. .+|.++|.++..++++ ++|+..|++||+++|++..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~a----------ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A 82 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDA----------DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEA 82 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCH----------HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHH
Confidence 355679999999999999999997 9999999999999875 59999999999999999999
Q ss_pred HHHHHHHHHHcC-----------CHHHHHHHHHHHHhhchhh
Q 002199 529 YMRAAKCHLVLG-----------EIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 529 ~~~LA~iy~~lG-----------~~eeAl~~yekaL~l~P~~ 559 (954)
|+.+|.+|..+| ++++|+.+|++|++++|++
T Consensus 83 ~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 83 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 999999999885 8999999999999999975
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.3e-11 Score=133.05 Aligned_cols=104 Identities=25% Similarity=0.354 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhH-----------------HHHHHHHHHHHHhcCHHHHHHH
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAA-----------------ICFCNRAAALQALGQIADAIAD 781 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a-----------------~~~~~lA~~y~~lg~~eeAi~~ 781 (954)
..+..+..+|..++..|+|++|+.+|++|+.+. |... .+|+++|.+|..+|+|++|+.+
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~----p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~ 252 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM----GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH 252 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS----CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh----ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345567789999999999999999999999998 4444 4899999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 782 CSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 782 ~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
|+++|+++|+++.+|+++|.+|..+|++++|+.+|++++++.|++
T Consensus 253 ~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~ 297 (338)
T 2if4_A 253 CNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297 (338)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 999999999999999999999999999999999999999996654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=5.5e-11 Score=116.98 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=85.6
Q ss_pred HcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002199 733 KSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQI----------ADAIADCSLAMALDENYTKAVSRRAAL 802 (954)
Q Consensus 733 ~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~----------eeAi~~~ekAL~ldP~~~~al~~lA~l 802 (954)
+.+.|++|+..|+++++++ |.++.+|+++|.++..++++ ++|+..|++||+++|++..+|+++|.+
T Consensus 14 r~~~feeA~~~~~~Ai~l~----P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN----PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 4577999999999999999 88999999999999999875 599999999999999999999999999
Q ss_pred HHHhc-----------CHHHHHHHHHHHHHHhhhhHHH
Q 002199 803 HEMIR-----------DYTQAASDLQRLVSILENQSAE 829 (954)
Q Consensus 803 y~~lg-----------~~eeAi~~~ekAL~l~p~~~~~ 829 (954)
|..+| ++++|+.+|++|+++.|++..+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 99885 8999999999999997766544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-10 Score=107.71 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=83.3
Q ss_pred HcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHH
Q 002199 733 KSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQA 812 (954)
Q Consensus 733 ~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeA 812 (954)
..|++++|+.+|++++.+.+. .|....+++++|.+|..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQ-GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCC-CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 368999999999999998311 1889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHH
Q 002199 813 ASDLQRLVSILENQSA 828 (954)
Q Consensus 813 i~~~ekAL~l~p~~~~ 828 (954)
+..|++++++.|++..
T Consensus 81 ~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 81 VELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHhCCCcHH
Confidence 9999999999766543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-11 Score=144.02 Aligned_cols=133 Identities=14% Similarity=0.158 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
.+..+|.+++..|++++|+.+|+++++++|.+. ..+.++|.+|..+|+|++|+.+|++|+
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~--------------------~~~~~lg~~~~~~g~~~~A~~~~~~al 67 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNA--------------------IYYGNRSLAYLRTECYGYALGDATRAI 67 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH--------------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH--------------------HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 455678899999999999999999999988763 367789999999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhcCHHHHHHHHH---------
Q 002199 749 STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAAL--HEMIRDYTQAASDLQ--------- 817 (954)
Q Consensus 749 ~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~l--y~~lg~~eeAi~~~e--------- 817 (954)
+++ |..+.+++++|.+|..+|++++|+..|+++++++|++..++..++.+ +..+|++++|+..++
T Consensus 68 ~l~----p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 143 (477)
T 1wao_1 68 ELD----KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSL 143 (477)
T ss_dssp HSC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCC
T ss_pred HhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhh
Confidence 998 77899999999999999999999999999999999999999999988 899999999999999
Q ss_pred --HHHHHhhh
Q 002199 818 --RLVSILEN 825 (954)
Q Consensus 818 --kAL~l~p~ 825 (954)
+++.+.|.
T Consensus 144 ~~~al~~~~~ 153 (477)
T 1wao_1 144 DIESMTIEDE 153 (477)
T ss_dssp TTSSCCCCTT
T ss_pred hhhhcccccc
Confidence 66666554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.1e-10 Score=103.62 Aligned_cols=99 Identities=16% Similarity=0.196 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDEN--YTKAVSRRA 800 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~--~~~al~~lA 800 (954)
.+..+|.+++..|++++|+.+|++++.+. |....+++++|.++..+|++++|+..|+++++++|. +..+++.+|
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD----PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34568999999999999999999999998 667889999999999999999999999999999999 999999999
Q ss_pred HHHHHh-cCHHHHHHHHHHHHHHhhh
Q 002199 801 ALHEMI-RDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 801 ~ly~~l-g~~eeAi~~~ekAL~l~p~ 825 (954)
.++..+ |++++|+++|++++...|.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 999999 9999999999999998553
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-10 Score=108.89 Aligned_cols=90 Identities=20% Similarity=0.153 Sum_probs=81.2
Q ss_pred HcCCHHHHHHHHHHHHHh---CCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 002199 460 KNNNLTEAEDFYTQGINS---VPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCH 536 (954)
Q Consensus 460 ~~g~y~eAi~~y~kAL~~---~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy 536 (954)
..|++++|+.+|+++|++ +|.+. .+++++|.+|+.+|++++|+..|+++++++|+++.+++.+|.+|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~----------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 71 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLA----------ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVL 71 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 468999999999999999 46654 89999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhchhh
Q 002199 537 LVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 537 ~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
..+|++++|+..|++++...|.+
T Consensus 72 ~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 72 YNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCCC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999998875
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.5e-11 Score=107.27 Aligned_cols=95 Identities=23% Similarity=0.296 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF- 525 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~- 525 (954)
.++.|..+|..++..|+|++|+..|++++.++|.+. .+|+++|.+|+.+|++++|+..|+++++++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 72 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP----------VGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAE 72 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcc
Confidence 467899999999999999999999999999999987 899999999999999999999999999999998
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002199 526 -----LKVYMRAAKCHLVLGEIENAQHYYHK 551 (954)
Q Consensus 526 -----~~a~~~LA~iy~~lG~~eeAl~~yek 551 (954)
..+++.+|.++..+|++++|+..|++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 73 HVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 99999999999999999888877654
|
| >2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-11 Score=113.80 Aligned_cols=86 Identities=21% Similarity=0.268 Sum_probs=70.1
Q ss_pred CCCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC----hhHHHHHHHHHHHCCCCCcccccccccCCCCCCCCCC
Q 002199 863 GEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE----YDQEQEIRKATKESPQNSHYGRSSDAYGYACRSSRRQ 938 (954)
Q Consensus 863 ~~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~----~~~~e~~~~~~~~l~~~~~~r~~yD~~g~~~~~~~~~ 938 (954)
....+||++|||.++++..+|+++||+++++||||++.. ...+..|.++|++|++ +..|+.||.+|........+
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d-~~~R~~YD~~~~~~~~~~~~ 95 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTN-EESRARYDHWRRSQMSMPFQ 95 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHTCSSCHH
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCC-HHHHHHHHHhhhhccCCCHH
Confidence 346899999999999999999999999999999999874 3456778899999986 88999999998655555555
Q ss_pred cccccccccCC
Q 002199 939 SRQDNWKTYGN 949 (954)
Q Consensus 939 ~~~~~~~~~~~ 949 (954)
.|......+..
T Consensus 96 ~w~~~~~~~~~ 106 (112)
T 2ctq_A 96 QWEALNDSVKT 106 (112)
T ss_dssp HHHHHHHCSSC
T ss_pred HHHHHHhhccC
Confidence 67665555444
|
| >2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A | Back alignment and structure |
|---|
Probab=99.08 E-value=6.3e-11 Score=101.54 Aligned_cols=66 Identities=35% Similarity=0.508 Sum_probs=59.2
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC-hhHHHHHHHHHHHCCCCCcccccccccCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE-YDQEQEIRKATKESPQNSHYGRSSDAYGY 930 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~-~~~~e~~~~~~~~l~~~~~~r~~yD~~g~ 930 (954)
...+||++|||.++++..+|+++||+++++||||++.. ...+..+.+++++|++ |..|+.||.+|.
T Consensus 6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d-~~~R~~YD~~g~ 72 (73)
T 2och_A 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSD-EKKRQIYDQGGE 72 (73)
T ss_dssp CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTS-HHHHHHHHHTC-
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCC-HHHHHHHHhcCC
Confidence 35789999999999999999999999999999999875 3667889999999986 889999999883
|
| >2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-10 Score=101.83 Aligned_cols=66 Identities=32% Similarity=0.472 Sum_probs=58.7
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC----hhHHHHHHHHHHHCCCCCcccccccccCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE----YDQEQEIRKATKESPQNSHYGRSSDAYGY 930 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~----~~~~e~~~~~~~~l~~~~~~r~~yD~~g~ 930 (954)
...+||++|||.++++..+|+++||+++++||||++.. ...+..|.+++++|++ +..|+.||.+|.
T Consensus 5 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d-~~~R~~YD~~g~ 74 (79)
T 2dn9_A 5 SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSD-EVKRKQYDAYGS 74 (79)
T ss_dssp CCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHS-HHHHHHHHHSCC
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHhccC
Confidence 35789999999999999999999999999999999874 2456788899999986 889999999984
|
| >1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.7e-11 Score=112.53 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=60.3
Q ss_pred cchhhhhccccCCCH--HHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTA--ADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~--~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.+||++|||.+.++. .+||++||+++++|||||+.....+.+|.+|+++|++ +..|+.||.+|..
T Consensus 8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d-~~~R~~~~~~~~~ 74 (114)
T 1gh6_A 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMED-GVKYAHQPDFGGF 74 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHH-HHHSCCSSCCSCC
T ss_pred hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCC-HHHHHHhhhcccc
Confidence 579999999999999 9999999999999999999988889999999999986 8999999988754
|
| >2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-10 Score=101.42 Aligned_cols=67 Identities=34% Similarity=0.500 Sum_probs=59.1
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh-----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY-----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~-----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
...+||++|||.++++..+|+++||+++++||||++... ..+..|.+++++|++ |..|+.||.+|..
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d-~~~R~~YD~~g~~ 78 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSD-AKKRDIYDRYGSG 78 (82)
T ss_dssp SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSS-TTHHHHHHHTCCC
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHcCcc
Confidence 357899999999999999999999999999999998754 245678899999986 8999999999843
|
| >1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-10 Score=100.73 Aligned_cols=65 Identities=34% Similarity=0.529 Sum_probs=57.8
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.+||.+|||.++++..+|+++||+++++||||++... ..+..+.+++++|++ |..|+.||.+|..
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d-~~~R~~Yd~~~~~ 70 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSD-PRKREIFDRYGEE 70 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTC-HHHHHHHHHTCGG
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCC-HHHHHHHHHHccc
Confidence 5799999999999999999999999999999998755 345677889999986 8999999999843
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.04 E-value=2.6e-07 Score=108.49 Aligned_cols=187 Identities=11% Similarity=0.025 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc---C
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGR-MREALEDCMMAATV---D 522 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~-~eeAl~~~~kALel---~ 522 (954)
.+...+..+...+-.|+++.|..+|++++...|. . .+|..........+. .+.....|+.|+.. +
T Consensus 13 ~aR~vyer~l~~~P~~~~e~~~~iferal~~~ps-~----------~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d 81 (493)
T 2uy1_A 13 SPSAIMEHARRLYMSKDYRSLESLFGRCLKKSYN-L----------DLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENY 81 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCCC-H----------HHHHHHHHHHHHHC----CTHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCCC-H----------HHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCC
Confidence 4566677777777779999999999999999984 2 677777777777663 34566778888864 7
Q ss_pred CCcHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHH------------------------
Q 002199 523 PNFLKVYMRAAKCHL----VLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQ------------------------ 574 (954)
Q Consensus 523 P~~~~a~~~LA~iy~----~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~------------------------ 574 (954)
|.....|......+. ..++.+.+...|+++|.. |....+. +......+.
T Consensus 82 ~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~--lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~ 158 (493)
T 2uy1_A 82 WDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSE--LWKDFENFELELNKITGKKIVGDTLPIFQSSFQ 158 (493)
T ss_dssp TTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHH--HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHH--HHHHHHHHHHHhccccHHHHHHHHhHHHHHHHH
Confidence 888888888777654 356788999999999985 5322111 111001000
Q ss_pred ---HHHh------HHHHHHHHHHHHHhcC---hHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 002199 575 ---KAQK------VTEYINCSGKLLEQKT---SEA---ASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLC 639 (954)
Q Consensus 575 ---~~~~------~~~~l~~a~~ll~~g~---~~~---a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ 639 (954)
.... ...|... ..+..++ ..+ ...+...|++++...|..+.+|+..+..+...|+.++|..+|
T Consensus 159 ~y~~~~~~~~~~s~~~W~~y--~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~ 236 (493)
T 2uy1_A 159 RYQQIQPLIRGWSVKNAARL--IDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVV 236 (493)
T ss_dssp HHHHHHHHHHTCSHHHHHHH--HHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHH--HHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 0000 0011111 1111121 111 224667899999999999999999999999999999999999
Q ss_pred HHhchhhhhhh
Q 002199 640 EHTLPVAEKNF 650 (954)
Q Consensus 640 ekaL~l~p~~~ 650 (954)
++++.. |.+.
T Consensus 237 erAi~~-P~~~ 246 (493)
T 2uy1_A 237 ERGIEM-SDGM 246 (493)
T ss_dssp HHHHHH-CCSS
T ss_pred HHHHhC-CCcH
Confidence 999999 8763
|
| >2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.5e-11 Score=107.98 Aligned_cols=65 Identities=38% Similarity=0.567 Sum_probs=57.8
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh-----hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY-----DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~-----~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.+||++|||.++++..+|+++||+++++||||++... ..+..|.+++++|++ +..|+.||.+|..
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d-~~~R~~YD~~g~~ 71 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSD-KHKREIYDRYGRE 71 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHhCcc
Confidence 4799999999999999999999999999999998753 345778899999986 8899999998844
|
| >2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-10 Score=101.17 Aligned_cols=67 Identities=34% Similarity=0.495 Sum_probs=58.8
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh---HHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD---QEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~---~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
...+||++|||.++++..+|+++||+++++||||++...+ .+..+.+++++|++ +..|+.||.+|..
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d-~~~R~~YD~~~~~ 74 (78)
T 2ctp_A 5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSN-PEKRKQYDQFGSG 74 (78)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTCSC
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCC-HHHHHHHHHcCcc
Confidence 3578999999999999999999999999999999997654 44577889999986 8899999999843
|
| >2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-10 Score=102.27 Aligned_cols=66 Identities=35% Similarity=0.481 Sum_probs=58.5
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh---HHHHHHHHHHHCCCCCcccccccccCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD---QEQEIRKATKESPQNSHYGRSSDAYGY 930 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~---~~e~~~~~~~~l~~~~~~r~~yD~~g~ 930 (954)
...+||++|||.++++..+|+++||+++++||||++.... .+..|.+++++|.+ +..|+.||.+|.
T Consensus 5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d-~~~R~~Yd~~~~ 73 (88)
T 2ctr_A 5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSD-ANRRKEYDTLGH 73 (88)
T ss_dssp CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHS-SHHHHHHHHTCH
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCC-HHHHHHHHHhCc
Confidence 3578999999999999999999999999999999998654 45677889999986 999999999884
|
| >2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.7e-11 Score=110.01 Aligned_cols=82 Identities=30% Similarity=0.421 Sum_probs=66.2
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC----hhHHHHHHHHHHHCCCCCcccccccccCCCC----CCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE----YDQEQEIRKATKESPQNSHYGRSSDAYGYAC----RSS 935 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~----~~~~e~~~~~~~~l~~~~~~r~~yD~~g~~~----~~~ 935 (954)
...+||++|||.++++..+|+++||+++++||||++.. ...+..|.+|+++|++ +..|+.||.+|..+ ...
T Consensus 15 ~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d-~~~R~~YD~~g~~~~~~~~~~ 93 (109)
T 2ctw_A 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTD-ATKRNIYDKYGSLGLYVAEQF 93 (109)
T ss_dssp CSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTC-HHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcC-HHHHHHHHHhccccccccccc
Confidence 35789999999999999999999999999999999875 2455678899999986 89999999998551 122
Q ss_pred CCCcccccccc
Q 002199 936 RRQSRQDNWKT 946 (954)
Q Consensus 936 ~~~~~~~~~~~ 946 (954)
....|.++|..
T Consensus 94 ~~~~~~~~~~~ 104 (109)
T 2ctw_A 94 GEENVNTYFVS 104 (109)
T ss_dssp CTTHHHHHHHS
T ss_pred CCcchHHHhhc
Confidence 34456666654
|
| >2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-10 Score=102.32 Aligned_cols=66 Identities=38% Similarity=0.498 Sum_probs=58.6
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh---hHHHHHHHHHHHCCCCCcccccccccCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY---DQEQEIRKATKESPQNSHYGRSSDAYGY 930 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~ 930 (954)
...+||++|||.++++..+|+++||+++++||||++... ..+..+.+++++|.+ |..|+.||.+|.
T Consensus 15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d-~~~R~~YD~~g~ 83 (88)
T 2cug_A 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSN-EEKRTNYDHYGS 83 (88)
T ss_dssp SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHS-HHHHHHHHHHTT
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCC-HHHHHHHHHcCC
Confidence 367899999999999999999999999999999998754 445678889999986 889999999984
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.9e-10 Score=101.79 Aligned_cols=94 Identities=24% Similarity=0.395 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------HH
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY------TK 794 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~------~~ 794 (954)
+..+..+|.+++..|+|++|+.+|++++.++ |..+.+++++|.++..+|++++|+..|+++++++|++ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ----PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 4567789999999999999999999999999 7778999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 795 AVSRRAALHEMIRDYTQAASDLQR 818 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~~ek 818 (954)
+++.+|.++..+|++++|+..+++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHH
Confidence 999999999999998888776654
|
| >2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.8e-10 Score=101.28 Aligned_cols=66 Identities=36% Similarity=0.505 Sum_probs=58.4
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh-----hHHHHHHHHHHHCCCCCcccccccccCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY-----DQEQEIRKATKESPQNSHYGRSSDAYGY 930 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~-----~~~e~~~~~~~~l~~~~~~r~~yD~~g~ 930 (954)
...+||++|||.++++..+|+++||+++++||||+.... ..+..|.+++++|.+ +..|+.||.+|.
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d-~~~R~~Yd~~~~ 77 (92)
T 2dmx_A 7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSD-SKKRSLYDRAGC 77 (92)
T ss_dssp CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHCS
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHhCc
Confidence 356899999999999999999999999999999998753 345678899999986 889999999884
|
| >2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.2e-10 Score=101.71 Aligned_cols=66 Identities=36% Similarity=0.535 Sum_probs=59.5
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCC-ChhHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRS-EYDQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~-~~~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..+||++|||.++++..+|+++||+++++||||++. ....+..|.++|++|++ +..|+.||.+|..
T Consensus 7 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d-~~~R~~YD~~~~~ 73 (92)
T 2o37_A 7 ETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILND-PQKREIYDQYGLE 73 (92)
T ss_dssp CCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTS-HHHHHHHHHHCHH
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCC-HHHHHHHHHHCHH
Confidence 578999999999999999999999999999999985 44567889999999986 8899999998854
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.95 E-value=5.4e-09 Score=91.24 Aligned_cols=86 Identities=23% Similarity=0.336 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
+..+..+..+|..++..|+|++|+.+|++++...|.+. .+++++|.++..+|++++|+..|+++++++|.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----------EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH----------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 35678899999999999999999999999999999986 89999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcC
Q 002199 525 FLKVYMRAAKCHLVLG 540 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG 540 (954)
+..++..+|.++..+|
T Consensus 76 ~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 76 NAEAKQNLGNAKQKQG 91 (91)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999998765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.9e-09 Score=94.96 Aligned_cols=84 Identities=14% Similarity=0.061 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 002199 466 EAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENA 545 (954)
Q Consensus 466 eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeA 545 (954)
+|+..|+++++.+|.+. .+++++|.+|+.+|++++|+..|+++++++|.+..+++.+|.+|..+|++++|
T Consensus 3 ~a~~~~~~al~~~p~~~----------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 72 (115)
T 2kat_A 3 AITERLEAMLAQGTDNM----------LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGA 72 (115)
T ss_dssp CHHHHHHHHHTTTCCCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhCCCcH----------HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 68999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhh
Q 002199 546 QHYYHKLLNSAAAV 559 (954)
Q Consensus 546 l~~yekaL~l~P~~ 559 (954)
+..|++++.+.|..
T Consensus 73 ~~~~~~al~~~~~~ 86 (115)
T 2kat_A 73 RQAWESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccc
Confidence 99999999998854
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.4e-09 Score=95.52 Aligned_cols=85 Identities=12% Similarity=0.064 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 739 EAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQR 818 (954)
Q Consensus 739 eAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ek 818 (954)
+|+..|++++..+ |.++.+++++|.+|..+|++++|+..|++++.++|.+..+++.+|.+|..+|++++|+..|++
T Consensus 3 ~a~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG----TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC----CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5889999999998 778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhH
Q 002199 819 LVSILENQS 827 (954)
Q Consensus 819 AL~l~p~~~ 827 (954)
++++.|...
T Consensus 79 al~~~~~~~ 87 (115)
T 2kat_A 79 GLAAAQSRG 87 (115)
T ss_dssp HHHHHHHHT
T ss_pred HHHhccccc
Confidence 999988653
|
| >1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.6e-10 Score=102.91 Aligned_cols=65 Identities=35% Similarity=0.566 Sum_probs=57.0
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC-h---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE-Y---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~-~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.+||++|||.++++..+|+++||+++++||||++.. . .....|.+++++|++ |..|+.||.+|..
T Consensus 3 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d-~~~R~~YD~~~~~ 71 (103)
T 1bq0_A 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTD-SQKRAAYDQYGHA 71 (103)
T ss_dssp CCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTC-SHHHHHTTTSTTT
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHhhh
Confidence 579999999999999999999999999999999874 3 344567788999986 8999999999966
|
| >2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.9e-10 Score=100.92 Aligned_cols=66 Identities=27% Similarity=0.314 Sum_probs=57.8
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC----hhHHHHHHHHHHHCCCCCcccccccccCC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE----YDQEQEIRKATKESPQNSHYGRSSDAYGY 930 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~----~~~~e~~~~~~~~l~~~~~~r~~yD~~g~ 930 (954)
...+||++|||.++++..+|+++||+++++||||++.. ...+.+|.++|++|++ +..|+.||.+..
T Consensus 15 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d-~~~R~~YD~~l~ 84 (99)
T 2yua_A 15 SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGS-ATLRRKYDRGLL 84 (99)
T ss_dssp CSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTS-HHHHHHHHHTCC
T ss_pred CccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHHhcc
Confidence 36789999999999999999999999999999999864 3456778899999986 889999998653
|
| >2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.88 E-value=2e-10 Score=106.47 Aligned_cols=66 Identities=26% Similarity=0.306 Sum_probs=58.5
Q ss_pred CCcchhhhhccccCC-CHHHHHHHHHHHHHhhCCCCCCC-------hhHHHHHHHHHHHCCCCCcccccccccCC
Q 002199 864 EPLDFYLILGVKASD-TAADIKKAYRKAALKHHPDKRSE-------YDQEQEIRKATKESPQNSHYGRSSDAYGY 930 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a-~~~eIkkAYrklAl~~HPDK~~~-------~~~~e~~~~~~~~l~~~~~~r~~yD~~g~ 930 (954)
...+||++|||.+++ +..+|+++||+++++||||+... ......+.+|+++|++ |..|+.||.+|.
T Consensus 13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d-~~~R~~YD~~~~ 86 (109)
T 2qsa_A 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKD-DEAKTNYDYYLD 86 (109)
T ss_dssp TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCC-HHHHHHHHHhcc
Confidence 367899999999999 99999999999999999999876 2345678899999986 889999999884
|
| >1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=7.9e-10 Score=99.61 Aligned_cols=65 Identities=32% Similarity=0.385 Sum_probs=56.8
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC----------hhHHHHHHHHHHHCCCCCcccccccccC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE----------YDQEQEIRKATKESPQNSHYGRSSDAYG 929 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~----------~~~~e~~~~~~~~l~~~~~~r~~yD~~g 929 (954)
...+||++|||.++++..+|+++||+++++||||++.. ...+..|.++|++|++ +..|+.||.+.
T Consensus 14 ~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d-~~~R~~YD~~l 88 (94)
T 1wjz_A 14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN-EETKKKYDLQR 88 (94)
T ss_dssp SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSS-SSHHHHHHHHS
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHc
Confidence 35789999999999999999999999999999999763 1345678899999987 89999999866
|
| >2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C | Back alignment and structure |
|---|
Probab=98.86 E-value=1.8e-10 Score=114.36 Aligned_cols=66 Identities=21% Similarity=0.287 Sum_probs=57.8
Q ss_pred CcchhhhhccccCCC--HHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDT--AADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~--~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..+||++|||+++++ ..+||+|||++++++|||++.......++.+|+++|++ |..|+.||.+|..
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsd-p~kR~~YD~~G~~ 77 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMED-GVKYAHQPDFGGF 77 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHH-HHHHHTSCGGGGC
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCC-HHHHHHHhccCCc
Confidence 357999999999998 59999999999999999999888888999999999986 8899999999953
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.3e-08 Score=117.05 Aligned_cols=149 Identities=12% Similarity=-0.015 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV----- 521 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel----- 521 (954)
.+......+..+..+|+|++|+.+|+++|++....- +..+...+..+.++|.+|..+|+|++|+..++++|++
T Consensus 308 ~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~l--g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l 385 (490)
T 3n71_A 308 FSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVF--ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLY 385 (490)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTB--CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHc
Confidence 344456667778899999999999999999754432 2334457899999999999999999999999999986
Q ss_pred ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHH
Q 002199 522 ---DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAA 598 (954)
Q Consensus 522 ---~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a 598 (954)
+|..+..+.+||.+|..+|+|++|+.+|++|+.+..
T Consensus 386 G~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~----------------------------------------- 424 (490)
T 3n71_A 386 HHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL----------------------------------------- 424 (490)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----------------------------------------
Confidence 345577899999999999999999999999988521
Q ss_pred HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhh
Q 002199 599 SSALERINEALS-ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVA 646 (954)
Q Consensus 599 ~eAL~~l~kaL~-~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~ 646 (954)
+.+. ..|....++.+++.++..++.|++|...|.++.+..
T Consensus 425 --------~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 425 --------VTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp --------HHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1211 123335566788999999999999999999986654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.2e-09 Score=93.53 Aligned_cols=91 Identities=13% Similarity=0.161 Sum_probs=82.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Q 002199 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVL-CYSNRAATRISLGRMREALEDCMMAATVDPNFLKVY 529 (954)
Q Consensus 451 l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~-~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~ 529 (954)
.+.+|..++..|+|++|+..|+++++.+|.+. . +|+++|.+|+.+|++++|+..|+++++++|++..++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGK----------DEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTH----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 35789999999999999999999999999986 7 999999999999999999999999999999998887
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 530 MRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 530 ~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
.. +.+.+|+..|++++..+|++
T Consensus 73 ~~--------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 73 AR--------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred HH--------HHHHHHHHHHHHHhccCccc
Confidence 54 67888999999988888764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.83 E-value=3.7e-08 Score=85.83 Aligned_cols=83 Identities=28% Similarity=0.318 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRA 800 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA 800 (954)
...+..+|.+++..+++++|+.+|++++.+. |....+++++|.++..+|++++|+.+|+++++++|.++.++..+|
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4567788999999999999999999999998 677889999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 002199 801 ALHEMIR 807 (954)
Q Consensus 801 ~ly~~lg 807 (954)
.++..+|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9998765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.81 E-value=4.9e-08 Score=114.24 Aligned_cols=139 Identities=10% Similarity=-0.052 Sum_probs=114.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 672 LISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 672 ~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~ 751 (954)
..+..+..+|+|++|+.+|++++.+....... ..+..+..+.++|.+|..+|+|++|+.+|+++|.+.
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~------------~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~ 381 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFAD------------TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGY 381 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCT------------TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCC------------CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 34556778999999999999999864322110 122345678889999999999999999999999873
Q ss_pred ----cCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002199 752 ----IESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL-----DENY---TKAVSRRAALHEMIRDYTQAASDLQRL 819 (954)
Q Consensus 752 ----~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l-----dP~~---~~al~~lA~ly~~lg~~eeAi~~~ekA 819 (954)
+.++|..+..+++||.+|..+|+|++|+.+|++|+++ .|++ ...+..++.++..++.|++|...|+++
T Consensus 382 ~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 382 MKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566999999999999999999999999999999976 4555 556678899999999999999999998
Q ss_pred HHH
Q 002199 820 VSI 822 (954)
Q Consensus 820 L~l 822 (954)
.+-
T Consensus 462 ~~~ 464 (490)
T 3n71_A 462 REA 464 (490)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-09 Score=112.29 Aligned_cols=65 Identities=31% Similarity=0.522 Sum_probs=57.5
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC-h---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE-Y---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~-~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.|||++|||.++++..+||++||+++++||||++.. . .....+.+||++|++ |..|+.||.+|..
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~-~~~r~~yd~~~~~ 70 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKD-EDLRKKYDKYGEK 70 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTS-HHHHHHHHHHTTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCC-HHHHHHHHHhccc
Confidence 479999999999999999999999999999999853 2 345678899999986 8999999999965
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.78 E-value=2.1e-06 Score=100.75 Aligned_cols=309 Identities=12% Similarity=-0.077 Sum_probs=182.0
Q ss_pred HcC-CHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 002199 460 KNN-NLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLV 538 (954)
Q Consensus 460 ~~g-~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~ 538 (954)
+.| ++..|...|++++...|. ++++.+...|+++|...| ....|.........
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~-------------------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~ 59 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS-------------------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRK 59 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT-------------------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC-------------------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHH
Confidence 345 377788888888877653 779999999999999988 77788877777766
Q ss_pred cCC-HHHHHHHHHHHHhh---chhhhhhHHHHHHHHH----HHHHHHhHHHHHHHHHH---------------HHHhcCh
Q 002199 539 LGE-IENAQHYYHKLLNS---AAAVCLDRRITIEAAD----GLQKAQKVTEYINCSGK---------------LLEQKTS 595 (954)
Q Consensus 539 lG~-~eeAl~~yekaL~l---~P~~~~~~~~~~ea~~----~l~~~~~~~~~l~~a~~---------------ll~~g~~ 595 (954)
.+. .+.....|+.++.. +|.....-........ ..+....+...+..+.. +......
T Consensus 60 ~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~ 139 (493)
T 2uy1_A 60 VSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNK 139 (493)
T ss_dssp HC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCH
T ss_pred hCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhcc
Confidence 663 45567788888874 3322111000110000 01111122222222211 0000000
Q ss_pred H-----------HHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccC---------HHHHHHHHHHhchhhhhhhhhhh
Q 002199 596 E-----------AASSALERINEALSISS-CSEKLLEMKADALYMLRK---------YEEAIQLCEHTLPVAEKNFASVL 654 (954)
Q Consensus 596 ~-----------~a~eAL~~l~kaL~~~P-~~~~~~~~lA~~~~~lg~---------~eeAi~~~ekaL~l~p~~~~~~~ 654 (954)
. ....|...|..+....+ .+...|..... +..++ ...+...|++++...|....
T Consensus 140 ~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~--~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~--- 214 (493)
T 2uy1_A 140 ITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLID--LEMENGMKLGGRPHESRMHFIHNYILDSFYYAEE--- 214 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHH--HHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHH---
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHH--HHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHH---
Confidence 0 00012222232222211 12233333222 22222 34466788888887775532
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHH---------HHHHHH----------
Q 002199 655 ADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILE---------SSMSLA---------- 715 (954)
Q Consensus 655 ~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~---------~~~~l~---------- 715 (954)
.|+..+..+...|+.+.|...|++++.. |........... .+....
T Consensus 215 --------------lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~ 279 (493)
T 2uy1_A 215 --------------VYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEK 279 (493)
T ss_dssp --------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC---------
T ss_pred --------------HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhh
Confidence 5778888899999999999999999999 876543211111 000000
Q ss_pred -HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCCH
Q 002199 716 -GTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALG-QIADAIADCSLAMALDENYT 793 (954)
Q Consensus 716 -~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg-~~eeAi~~~ekAL~ldP~~~ 793 (954)
........|...+..+.+.+..+.|...|.+| . .| +....+|...|.+....+ +.+.|...|+.+++..|+.+
T Consensus 280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~---~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~ 354 (493)
T 2uy1_A 280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NE---GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST 354 (493)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TS---CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH
T ss_pred hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CC---CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCH
Confidence 00111234555666666778899999999999 3 32 224556777777777777 59999999999999889888
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002199 794 KAVSRRAALHEMIRDYTQAASDLQRL 819 (954)
Q Consensus 794 ~al~~lA~ly~~lg~~eeAi~~~ekA 819 (954)
..+...+.....+|+.+.|...|+++
T Consensus 355 ~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 355 LLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888888899999999888886
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.6e-08 Score=90.29 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=81.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAI-CFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 725 ~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~-~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
..+|..++..|++++|+..|++++.++ |.... +++++|.+|..+|++++|+..|+++++++|++..++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE----PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR----- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC----SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-----
Confidence 357889999999999999999999998 67778 99999999999999999999999999999999988754
Q ss_pred HHhcCHHHHHHHHHHHHHHhhhh
Q 002199 804 EMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 804 ~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
+.+.+|+..|++++.+.|.+
T Consensus 75 ---~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp ---HHHHHHHHHHCCTTHHHHCC
T ss_pred ---HHHHHHHHHHHHHhccCccc
Confidence 77888999999999887754
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.7e-08 Score=89.94 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=68.6
Q ss_pred hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 756 PFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 756 p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
|.++.+++++|.+|..+|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|...+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 7889999999999999999999999999999999999999999999999999999999999999999876543
|
| >1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=3.7e-09 Score=91.70 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=54.3
Q ss_pred cchhhhhccccC--CCHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHCCCCCcccccccccC
Q 002199 866 LDFYLILGVKAS--DTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQNSHYGRSSDAYG 929 (954)
Q Consensus 866 ~dyYkiLgv~~~--a~~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l~~~~~~r~~yD~~g 929 (954)
.++|++|||.++ ++..+||++||+++++||||++.....+.+|.++|++|.+ +..|.. |.||
T Consensus 11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~-~~~r~~-~~~g 74 (79)
T 1faf_A 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKT-EVYNLR-MNLG 74 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHH-HHHHHT-TCCS
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhh-HHHHHH-HhcC
Confidence 468999999999 9999999999999999999999888889999999999976 545544 5566
|
| >2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=5.1e-09 Score=103.36 Aligned_cols=66 Identities=33% Similarity=0.373 Sum_probs=57.9
Q ss_pred CCCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----------hHHHHHHHHHHHCCCCCcccccccccC
Q 002199 863 GEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----------DQEQEIRKATKESPQNSHYGRSSDAYG 929 (954)
Q Consensus 863 ~~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----------~~~e~~~~~~~~l~~~~~~r~~yD~~g 929 (954)
....+||++|||+++++..+||++||+++++|||||.... .....+.+|+++|++ |..|+.||..+
T Consensus 7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~d-p~~R~~Yd~~~ 82 (155)
T 2l6l_A 7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGN-EETKREYDLQR 82 (155)
T ss_dssp CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSS-HHHHCHHHHHH
T ss_pred CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHc
Confidence 3467999999999999999999999999999999998654 345678899999986 88999999754
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.71 E-value=8e-08 Score=86.77 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
.+++.+|.+|+.+|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 8999999999999999999999999999999999999999999999999999999999999987753
|
| >2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=7.5e-09 Score=92.26 Aligned_cols=58 Identities=28% Similarity=0.334 Sum_probs=48.5
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh---HHHHHHHHHHHCCCCCcccc
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD---QEQEIRKATKESPQNSHYGR 923 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~---~~e~~~~~~~~l~~~~~~r~ 923 (954)
..+||++|||.++++..+||++||+++++|||||+...+ .+..|.++|++|.+ +..|+
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d-~~~R~ 86 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLK-NIKSG 86 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHH-HHCCS
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCC-ccccc
Confidence 578999999999999999999999999999999996554 45567778888875 54443
|
| >2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A | Back alignment and structure |
|---|
Probab=98.67 E-value=8.6e-09 Score=91.40 Aligned_cols=50 Identities=30% Similarity=0.274 Sum_probs=42.1
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh-------HHHHHHHHHHHC
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD-------QEQEIRKATKES 915 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~-------~~e~~~~~~~~l 915 (954)
.++|++|||.+.+++.+||+|||++|++|||||+.+.. .+.++.++|++|
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL 89 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEF 89 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999986532 345666777766
|
| >2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.59 E-value=2e-08 Score=85.30 Aligned_cols=52 Identities=25% Similarity=0.256 Sum_probs=48.0
Q ss_pred cchhhhhcccc-CCCHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHCCC
Q 002199 866 LDFYLILGVKA-SDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQ 917 (954)
Q Consensus 866 ~dyYkiLgv~~-~a~~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l~~ 917 (954)
.++|++|||.+ +++..+|+++||+++++||||++.......++.+++++|.+
T Consensus 14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~ 66 (71)
T 2guz_A 14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEK 66 (71)
T ss_dssp HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhh
Confidence 47899999998 79999999999999999999998888888999999999865
|
| >1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=4.4e-08 Score=86.55 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=46.1
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh-----hHHHHHHHHHHHCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY-----DQEQEIRKATKESPQ 917 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~-----~~~e~~~~~~~~l~~ 917 (954)
..++|++|||.++++..+||++||+++++||||++... ..+.+|.++|++|.+
T Consensus 15 ~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~ 72 (88)
T 1iur_A 15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK 72 (88)
T ss_dssp HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 35689999999999999999999999999999998763 445677888998865
|
| >3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A | Back alignment and structure |
|---|
Probab=98.56 E-value=7.5e-09 Score=114.22 Aligned_cols=64 Identities=33% Similarity=0.434 Sum_probs=0.0
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh---HHHHHHHHHHHCCCCCcccccccccC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD---QEQEIRKATKESPQNSHYGRSSDAYG 929 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~---~~e~~~~~~~~l~~~~~~r~~yD~~g 929 (954)
..|||++|||.++++..+||+|||+++++||||++.... .+.++.+||++|++ +..|+.||.|+
T Consensus 27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d-~~~R~~YD~~~ 93 (329)
T 3lz8_A 27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKD-EQRRAEYDQLW 93 (329)
T ss_dssp --------------------------------------------------------------------
T ss_pred ccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhh-hhhhcccchhh
Confidence 468999999999999999999999999999999987543 45678889999997 99999999984
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-06 Score=97.77 Aligned_cols=157 Identities=15% Similarity=0.087 Sum_probs=115.4
Q ss_pred HHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 473 QGINSVPLSETAGCCIKPLVLCYSNRAATRISLGR---MREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYY 549 (954)
Q Consensus 473 kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~---~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~y 549 (954)
++...-|.+.. +.-++.+|..++..+. +.+|+.+|++|++++|+++.+|..++.+|...
T Consensus 185 r~~~~~p~~~~--------Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~---------- 246 (372)
T 3ly7_A 185 TLQKILPHRGA--------LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR---------- 246 (372)
T ss_dssp HHHHHSCSSGG--------GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH----------
T ss_pred HHhccCCCCHH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----------
Confidence 34455666653 2566677777777654 58999999999999999999999999998811
Q ss_pred HHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 002199 550 HKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYML 629 (954)
Q Consensus 550 ekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~l 629 (954)
.. ..|.. .. .. .....++.. ..++...|.++.++..++.++...
T Consensus 247 -~~--~~~~~---~~-----------------~~------------~~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~ 290 (372)
T 3ly7_A 247 -HS--QHPLD---EK-----------------QL------------AALNTEIDN-IVTLPELNNLSIIYQIKAVSALVK 290 (372)
T ss_dssp -HH--HSCCC---HH-----------------HH------------HHHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHH
T ss_pred -hc--cCCCc---hh-----------------hH------------HHHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhC
Confidence 00 00100 00 00 000022221 134567799999999999999999
Q ss_pred cCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q 002199 630 RKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISD 701 (954)
Q Consensus 630 g~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~ 701 (954)
|++++|+..+++++.++|.. .+|..+|.++...|++++|++.|.+|+.++|..+
T Consensus 291 gd~d~A~~~l~rAl~Ln~s~------------------~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLEMSW------------------LNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCHHHHHHHHHHHHHHCCCH------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CCHHHHHHHHHHHHhcCCCH------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 99999999999999998642 1577899999999999999999999999999654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-06 Score=83.97 Aligned_cols=110 Identities=11% Similarity=-0.006 Sum_probs=97.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHH
Q 002199 681 GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAI 760 (954)
Q Consensus 681 G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~ 760 (954)
+++++|+.+|+++.+..... +. +|.+|...+.+++|+.+|+++.... ++.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~----------------------a~--lg~~y~~g~~~~~A~~~~~~Aa~~g------~~~ 58 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF----------------------GC--LSLVSNSQINKQKLFQYLSKACELN------SGN 58 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT----------------------HH--HHHHTCTTSCHHHHHHHHHHHHHTT------CHH
T ss_pred cCHHHHHHHHHHHHcCCCHh----------------------hh--HHHHHHcCCCHHHHHHHHHHHHcCC------CHH
Confidence 46889999999998865321 22 7888988899999999999999864 678
Q ss_pred HHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHH
Q 002199 761 CFCNRAAALQA----LGQIADAIADCSLAMALDENYTKAVSRRAALHEM----IRDYTQAASDLQRLVSI 822 (954)
Q Consensus 761 ~~~~lA~~y~~----lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~----lg~~eeAi~~~ekAL~l 822 (954)
+++++|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.++
T Consensus 59 a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 59 GCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 99999999999 89999999999999987 689999999999999 99999999999999988
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.3e-06 Score=84.09 Aligned_cols=121 Identities=15% Similarity=-0.003 Sum_probs=100.7
Q ss_pred cCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHH
Q 002199 630 RKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILE 709 (954)
Q Consensus 630 g~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~ 709 (954)
+++++|+.+|+++.+..... ++ +|.+|...+.+++|+.+|+++.+...
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~-------------------a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~----------- 56 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF-------------------GC--LSLVSNSQINKQKLFQYLSKACELNS----------- 56 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT-------------------HH--HHHHTCTTSCHHHHHHHHHHHHHTTC-----------
T ss_pred cCHHHHHHHHHHHHcCCCHh-------------------hh--HHHHHHcCCCHHHHHHHHHHHHcCCC-----------
Confidence 47899999999998876432 34 89999999999999999999987521
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH----hcCHHHHHHH
Q 002199 710 SSMSLAGTVRALLHHKSAGNEAFK----SGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA----LGQIADAIAD 781 (954)
Q Consensus 710 ~~~~l~~~~~~~~~~~~lG~~~~~----~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~----lg~~eeAi~~ 781 (954)
..++.++|.+|.. .+++++|+.+|++|.+.. ++.++++||.+|.. .+++++|+.+
T Consensus 57 -----------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 119 (138)
T 1klx_A 57 -----------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN------DQDGCLILGYKQYAGKGVVKNEKQAVKT 119 (138)
T ss_dssp -----------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred -----------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC------CHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 3467789999999 899999999999999864 67899999999999 8999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHH
Q 002199 782 CSLAMALDENYTKAVSRRAA 801 (954)
Q Consensus 782 ~ekAL~ldP~~~~al~~lA~ 801 (954)
|+++.+. .++.+...++.
T Consensus 120 ~~~Aa~~--g~~~A~~~l~~ 137 (138)
T 1klx_A 120 FEKACRL--GSEDACGILNN 137 (138)
T ss_dssp HHHHHHT--TCHHHHHHC--
T ss_pred HHHHHHC--CCHHHHHHHhh
Confidence 9999987 45666666553
|
| >1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J | Back alignment and structure |
|---|
Probab=98.46 E-value=3.7e-08 Score=98.34 Aligned_cols=59 Identities=27% Similarity=0.228 Sum_probs=51.3
Q ss_pred cchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh-------HHHHHHHHHHHCCCCCcccccc
Q 002199 866 LDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD-------QEQEIRKATKESPQNSHYGRSS 925 (954)
Q Consensus 866 ~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~-------~~e~~~~~~~~l~~~~~~r~~y 925 (954)
.+||++|||.+.++..+||++||+++++|||||+.... .+.+|.+||++|++ +..|+.|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD-~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN-QGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHH-HHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCC-HHhhhhC
Confidence 68999999999999999999999999999999986543 45678889999986 7777766
|
| >3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.45 E-value=5.9e-08 Score=88.89 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=44.3
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC-----------hhHHHHHHHHHHHCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE-----------YDQEQEIRKATKESPQ 917 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~-----------~~~~e~~~~~~~~l~~ 917 (954)
..|||.+||+.. ++..+||+|||+++++|||||+.. ...+.++.++|++|++
T Consensus 40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd 102 (106)
T 3ag7_A 40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT 102 (106)
T ss_dssp TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcC
Confidence 478999999996 999999999999999999999753 2345677888999876
|
| >1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=5.6e-08 Score=97.13 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=54.9
Q ss_pred chhhhhccccCC--CHHHHHHHHHHHHHhhCCCCCCChh---------HHHHHHHHHHHCCCCCcccccccccC
Q 002199 867 DFYLILGVKASD--TAADIKKAYRKAALKHHPDKRSEYD---------QEQEIRKATKESPQNSHYGRSSDAYG 929 (954)
Q Consensus 867 dyYkiLgv~~~a--~~~eIkkAYrklAl~~HPDK~~~~~---------~~e~~~~~~~~l~~~~~~r~~yD~~g 929 (954)
+||.+|||++.+ +..+|+++||+++++||||+..... ....+.++|++|++ |..|+.||...
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~d-p~~R~~Yd~~l 74 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH-PLMRAEYLLSL 74 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-chHHHHHHHHh
Confidence 799999999999 9999999999999999999986542 45678899999986 89999999764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.41 E-value=3.4e-06 Score=93.85 Aligned_cols=136 Identities=13% Similarity=0.089 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCH-------HHHHH-HHH
Q 002199 448 CEMWRLRGNQAYKNNN---LTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM-------REALE-DCM 516 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~---y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~-------eeAl~-~~~ 516 (954)
+-.++.+|..++..+. +.+|+.+|++||+++|+.. .+|..++.+|+....+ ..++. .+.
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a----------~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFT----------YARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 4556788888887654 5899999999999999997 8888888888632211 11111 111
Q ss_pred --HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Q 002199 517 --MAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKT 594 (954)
Q Consensus 517 --kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~ 594 (954)
.++..+|..+.++..+|.++...|++++|+..+++++.++|. +..+..++..+...|+
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s--------------------~~a~~llG~~~~~~G~ 325 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS--------------------WLNYVLLGKVYEMKGM 325 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHTTC
T ss_pred HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--------------------HHHHHHHHHHHHHCCC
Confidence 234667888999999998888889999999999998888753 2223444445555555
Q ss_pred hHHHHHHHHHHHHHHhcCCCCH
Q 002199 595 SEAASSALERINEALSISSCSE 616 (954)
Q Consensus 595 ~~~a~eAL~~l~kaL~~~P~~~ 616 (954)
++ +|++.|.+|+.++|..+
T Consensus 326 ~~---eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 326 NR---EAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HH---HHHHHHHHHHHHSCSHH
T ss_pred HH---HHHHHHHHHHhcCCCcC
Confidence 55 45555555555555443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.2e-06 Score=100.95 Aligned_cols=99 Identities=14% Similarity=0.087 Sum_probs=85.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhc----cCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHH
Q 002199 727 AGNEAFKSGRYTEAVEHYTVALSTN----IESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL--------DENYTK 794 (954)
Q Consensus 727 lG~~~~~~g~~eeAi~~y~kAL~l~----~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l--------dP~~~~ 794 (954)
....+..+|+|++|+..|++++.+. ...+|..+.++.++|.+|..+|+|++|+.+++++|++ +|....
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3445678899999999999999873 2445888999999999999999999999999999976 344466
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 795 AVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 795 al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
.+++||.+|..+|++++|+..|++|+++...
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999643
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.3e-06 Score=98.59 Aligned_cols=98 Identities=10% Similarity=0.024 Sum_probs=84.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhcc----CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHH
Q 002199 728 GNEAFKSGRYTEAVEHYTVALSTNI----ESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL--------DENYTKA 795 (954)
Q Consensus 728 G~~~~~~g~~eeAi~~y~kAL~l~~----~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l--------dP~~~~a 795 (954)
+......|+|++|+.+|+++|.+.. ..+|..+.++.++|.+|..+|+|++|+.+|+++|++ +|+....
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 3344457899999999999998732 345888999999999999999999999999999976 3445678
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 796 VSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 796 l~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
+.+||.+|..+|+|++|+..|++|+++...
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~ 414 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIMEV 414 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.39 E-value=1e-06 Score=78.93 Aligned_cols=70 Identities=17% Similarity=0.097 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 756 PFAAICFCNRAAALQALGQ---IADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 756 p~~a~~~~~lA~~y~~lg~---~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
|.++.++..+|.+++..++ .++|...++++|+++|+++.+++.+|.+++..|+|++|+.+|+++++.+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 7788999999999987766 799999999999999999999999999999999999999999999999665
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=2.1e-05 Score=84.20 Aligned_cols=86 Identities=13% Similarity=0.000 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHhhccCCchh--hHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-h
Q 002199 736 RYTEAVEHYTVALSTNIESRPF--AAICFCNRAAALQAL-----GQIADAIADCSLAMALDENY-TKAVSRRAALHEM-I 806 (954)
Q Consensus 736 ~~eeAi~~y~kAL~l~~~~~p~--~a~~~~~lA~~y~~l-----g~~eeAi~~~ekAL~ldP~~-~~al~~lA~ly~~-l 806 (954)
....|...+++|++++ |. ...+|..+|.+|... |+.++|..+|++||+++|+. +.+++.+|..+.. +
T Consensus 178 ~l~~A~a~lerAleLD----P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 178 TVHAAVMMLERACDLW----PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHHC----TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTT
T ss_pred hHHHHHHHHHHHHHhC----CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Confidence 3678999999999999 55 677999999999996 99999999999999999975 9999999999988 5
Q ss_pred cCHHHHHHHHHHHHHHhhh
Q 002199 807 RDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 807 g~~eeAi~~~ekAL~l~p~ 825 (954)
|++++|..++++++.+.|.
T Consensus 254 gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 9999999999999999664
|
| >3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.3e-07 Score=97.36 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=53.5
Q ss_pred CcchhhhhccccC--CCHHHHHHHHHHHHHhhCCCCCCChh---------HHHHHHHHHHHCCCCCcccccccc
Q 002199 865 PLDFYLILGVKAS--DTAADIKKAYRKAALKHHPDKRSEYD---------QEQEIRKATKESPQNSHYGRSSDA 927 (954)
Q Consensus 865 ~~dyYkiLgv~~~--a~~~eIkkAYrklAl~~HPDK~~~~~---------~~e~~~~~~~~l~~~~~~r~~yD~ 927 (954)
..+||.+|||++. ++..+|+++||+++++||||++.... ....|.++|++|++ |..|+.||.
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsd-p~~R~~Yd~ 114 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLA-PLSRGLYLL 114 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHH
Confidence 5789999999986 68899999999999999999986432 23578899999987 899999984
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.2e-06 Score=98.61 Aligned_cols=102 Identities=7% Similarity=-0.033 Sum_probs=84.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Q 002199 453 LRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV--------DPN 524 (954)
Q Consensus 453 ~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel--------~P~ 524 (954)
..+......|+|++|+.+|+++|++....- +..+...+..+.++|.+|..+|+|++|+.+++++|++ +|+
T Consensus 303 e~~~~~~~~g~~~eA~~~~~~~L~i~~~~l--g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 380 (433)
T 3qww_A 303 EEFRRAKHYKSPSELLEICELSQEKMSSVF--EDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN 380 (433)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHHTTTB--CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHhhhccCHHHHHHHHHHHHHHhhCcc--ChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 334444567899999999999999754321 2233457899999999999999999999999999986 355
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 525 FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSA 556 (954)
Q Consensus 525 ~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~ 556 (954)
.+..+.+||.+|..+|+|++|+.+|++|+++.
T Consensus 381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 381 VASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 57789999999999999999999999999863
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.1e-06 Score=74.97 Aligned_cols=66 Identities=18% Similarity=0.080 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchh
Q 002199 493 LCYSNRAATRISLGR---MREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAA 558 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~---~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~ 558 (954)
.++..+|.+++..++ .++|...++++|+++|+++.+++.+|.+++..|+|++|+.+|+++++.+|.
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 899999999987776 799999999999999999999999999999999999999999999999997
|
| >3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1.7e-07 Score=94.26 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=56.9
Q ss_pred cCCCcchhhhh------cccc-CCCHHHHHHHHHHHHHhhCCCCCC-ChhHHHHHHHHHHHCCCCCcccccccc
Q 002199 862 KGEPLDFYLIL------GVKA-SDTAADIKKAYRKAALKHHPDKRS-EYDQEQEIRKATKESPQNSHYGRSSDA 927 (954)
Q Consensus 862 ~~~~~dyYkiL------gv~~-~a~~~eIkkAYrklAl~~HPDK~~-~~~~~e~~~~~~~~l~~~~~~r~~yD~ 927 (954)
.....+||.+| |+.+ +++..+|+++||+++++||||++. .......+.++|++|++ |..|+.||.
T Consensus 7 ~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~d-p~~R~~Yd~ 79 (181)
T 3uo3_A 7 RRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKD-PLRRSQYML 79 (181)
T ss_dssp CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHS-HHHHHHHHH
T ss_pred CCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcC-hHHHHHHHH
Confidence 34567999999 4654 899999999999999999999987 55677889999999987 999999997
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.26 E-value=7.3e-06 Score=74.62 Aligned_cols=78 Identities=15% Similarity=0.063 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC---chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIES---RPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRR 799 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~---~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~l 799 (954)
..+.+|..++..++|..|+.+|++|+...+.. ......++.++|.++.++|++++|+..+++++.++|++..++.++
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 35678999999999999999999999875322 246789999999999999999999999999999999999988877
Q ss_pred H
Q 002199 800 A 800 (954)
Q Consensus 800 A 800 (954)
+
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.26 E-value=9.2e-08 Score=118.83 Aligned_cols=66 Identities=30% Similarity=0.510 Sum_probs=39.6
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCC-h---hHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSE-Y---DQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~-~---~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..|||++|||.++++..+||+|||+++++|||||+.. . .....+.+||++|++ |..|+.||.+|..
T Consensus 20 ~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~-~~~r~~yd~~~~~ 89 (780)
T 3apo_A 20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKD-EDLRKKYDKYGEK 89 (780)
T ss_dssp ---CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHS-HHHHHHHTTC---
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcC-hHHHHHHHhhccc
Confidence 5789999999999999999999999999999999853 2 344577789999986 8999999999965
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=2.7e-05 Score=83.33 Aligned_cols=111 Identities=18% Similarity=0.146 Sum_probs=84.8
Q ss_pred hcCCCCHHHHHHHHHHHHH---c--c------CHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHH
Q 002199 610 SISSCSEKLLEMKADALYM---L--R------KYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYF 678 (954)
Q Consensus 610 ~~~P~~~~~~~~lA~~~~~---l--g------~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~ 678 (954)
..+|.+++++++.|.+... . | ...+|...++++++++|..... -+|..+|.+|.
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~G---------------sA~~~LG~lY~ 210 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEG---------------AVWNVLTKFYA 210 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHH---------------HHHHHHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccC---------------HHHHHHHHHHH
Confidence 4578899999998887654 1 2 4578999999999999974221 16788999998
Q ss_pred Hc-----CCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcc
Q 002199 679 CI-----GKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFK-SGRYTEAVEHYTVALSTNI 752 (954)
Q Consensus 679 ~l-----G~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~-~g~~eeAi~~y~kAL~l~~ 752 (954)
.. |+.++|..+|++++++.|.... ..+...|..++. .+++++|..++++|+...|
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~LnP~~~i-------------------d~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTRYCSAHDP-------------------DHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHHHCCTTCS-------------------HHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred hCCCccCCCHHHHHHHHHHHHHhCCCCCc-------------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 85 8999999999999999885422 234456777776 4889999999999988876
Q ss_pred CC
Q 002199 753 ES 754 (954)
Q Consensus 753 ~~ 754 (954)
..
T Consensus 272 ~~ 273 (301)
T 3u64_A 272 ES 273 (301)
T ss_dssp GG
T ss_pred CC
Confidence 53
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=6.3e-06 Score=94.84 Aligned_cols=106 Identities=13% Similarity=-0.043 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATV------ 521 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel------ 521 (954)
+..+......+..+|+|++|+..|+++|++....- +..+...+..+.++|.+|..+|+|++|+.+++++|++
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~l--g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg 364 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERL--PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP 364 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCC--CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcC--CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC
Confidence 34444555667889999999999999998754321 2334457899999999999999999999999999986
Q ss_pred --CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 522 --DPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 522 --~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
+|..+..+++||.+|..+|++++|+.+|++|+++
T Consensus 365 ~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 365 GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3455778999999999999999999999999986
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1e-05 Score=73.60 Aligned_cols=83 Identities=16% Similarity=0.095 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~ 527 (954)
++..+.+|..++..++|..|+..|++|++..+.... .......++..+|.+|+++|+++.|+..+++++.++|++..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~---~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI---STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC---CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 456789999999999999999999999997543210 12235689999999999999999999999999999999998
Q ss_pred HHHHHH
Q 002199 528 VYMRAA 533 (954)
Q Consensus 528 a~~~LA 533 (954)
++.+++
T Consensus 82 ~~~n~~ 87 (104)
T 2v5f_A 82 ANGNLK 87 (104)
T ss_dssp HHHHHH
T ss_pred HHhhHH
Confidence 887776
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=1.5e-05 Score=77.42 Aligned_cols=88 Identities=15% Similarity=0.034 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CcHHHHHHHHHHHH
Q 002199 463 NLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG---RMREALEDCMMAATVD-P-NFLKVYMRAAKCHL 537 (954)
Q Consensus 463 ~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg---~~eeAl~~~~kALel~-P-~~~~a~~~LA~iy~ 537 (954)
....+.+.|.+.+..++.+. .+.+++|.++.+.. +.++++..++.+++.+ | ....++|.||..|+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~----------~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~ 82 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSK----------STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 82 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCH----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcH----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH
Confidence 34567788888888888665 99999999999988 6779999999999999 7 66899999999999
Q ss_pred HcCCHHHHHHHHHHHHhhchhhh
Q 002199 538 VLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 538 ~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
++|+|++|+.+++++|+++|++.
T Consensus 83 kl~~Y~~A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 83 RLKEYEKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HTSCHHHHHHHHHHHHHHCTTCH
T ss_pred HccCHHHHHHHHHHHHhcCCCCH
Confidence 99999999999999999999873
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=2.2e-05 Score=76.30 Aligned_cols=89 Identities=10% Similarity=0.032 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhcCHHH
Q 002199 737 YTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALG---QIADAIADCSLAMALD-E-NYTKAVSRRAALHEMIRDYTQ 811 (954)
Q Consensus 737 ~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg---~~eeAi~~~ekAL~ld-P-~~~~al~~lA~ly~~lg~~ee 811 (954)
...+.+.|.+.+..+ +....+.+++|+++.+.. ++.+++..++.+++.+ | ...+++|.+|..|+++|+|++
T Consensus 14 l~~~~~~y~~e~~~~----~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG----SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHTT----CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHccC----CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 455667777777766 567899999999999988 7779999999999998 7 578999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHH
Q 002199 812 AASDLQRLVSILENQSAE 829 (954)
Q Consensus 812 Ai~~~ekAL~l~p~~~~~ 829 (954)
|+++++++|++.|++.+.
T Consensus 90 A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCCCCHHH
Confidence 999999999996665443
|
| >2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.71 E-value=2.9e-05 Score=64.04 Aligned_cols=48 Identities=13% Similarity=0.159 Sum_probs=43.9
Q ss_pred hhhhhccccC---CCHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHC
Q 002199 868 FYLILGVKAS---DTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKES 915 (954)
Q Consensus 868 yYkiLgv~~~---a~~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l 915 (954)
-|+||||.+. ++..+|+++||+|...+||||+-.+-....+.+|.+.+
T Consensus 6 A~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l 56 (65)
T 2guz_B 6 SCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERL 56 (65)
T ss_dssp HHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 4899999999 89999999999999999999998888888888887776
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0049 Score=72.16 Aligned_cols=165 Identities=11% Similarity=0.044 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHhchhh--hhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcC---------CHHHH
Q 002199 618 LLEMKADALYMLRKYEEAIQLCEHTLPVA--EKNFASVLADNGSVTYSLARLWRWRLISKSYFCIG---------KLEVA 686 (954)
Q Consensus 618 ~~~~lA~~~~~lg~~eeAi~~~ekaL~l~--p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG---------~~eeA 686 (954)
++..+-..+.+.|++++|+.+|+++.... |+. ..|..+-.++...+ .+++|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~------------------~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQ------------------YHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCH------------------HHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH------------------hHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 44555678889999999999999987642 221 13334434444333 37889
Q ss_pred HHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHH
Q 002199 687 LDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRA 766 (954)
Q Consensus 687 l~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA 766 (954)
..+|++.....-.. . ...|..+-..|.+.|++++|+++|++...... .-+...|..+-
T Consensus 90 ~~lf~~M~~~G~~P-d------------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~---~Pd~~tyn~lI 147 (501)
T 4g26_A 90 FDIFKQMIVDKVVP-N------------------EATFTNGARLAVAKDDPEMAFDMVKQMKAFGI---QPRLRSYGPAL 147 (501)
T ss_dssp HHHHHHHHHTTCCC-C------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC---CCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCC-C------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCccceehHHH
Confidence 99998876542111 1 23456677888999999999999999887642 23567788888
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 767 AALQALGQIADAIADCSLAMALD-ENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 767 ~~y~~lg~~eeAi~~~ekAL~ld-P~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
..|.+.|++++|+..|+...+.. .-+...|..+-.+|.+.|+.++|.+.|++..+.
T Consensus 148 ~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 148 FGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999988753 225678889999999999999999999987654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0017 Score=60.88 Aligned_cols=90 Identities=13% Similarity=-0.004 Sum_probs=77.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CcHHHHHHHHHH
Q 002199 461 NNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMRE---ALEDCMMAATVD-P-NFLKVYMRAAKC 535 (954)
Q Consensus 461 ~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~ee---Al~~~~kALel~-P-~~~~a~~~LA~i 535 (954)
......+...|.+.+...+... .+-+++|.++.+..+... +|..++..+..+ | .....++.||..
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~----------~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg 83 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSK----------STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 83 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCH----------HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcH----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 3445567778888888776554 899999999999887776 999999999987 5 567899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 536 HLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 536 y~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
++++|+|.+|+.+++.+|+..|++.
T Consensus 84 ~yklg~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 84 NYRLKEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhhHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999873
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0014 Score=64.22 Aligned_cols=102 Identities=11% Similarity=-0.022 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------C
Q 002199 450 MWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD------P 523 (954)
Q Consensus 450 ~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~------P 523 (954)
+++.....++..|.|+.|+-....++.+...++.. ......+.++..+|.+++..++|..|+..|++||.+. +
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~-~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPEL-FSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTS-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCccc-ccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46777888999999999999999988775443310 0122346799999999999999999999999997642 1
Q ss_pred -------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 524 -------------------NFLKVYMRAAKCHLVLGEIENAQHYYHKL 552 (954)
Q Consensus 524 -------------------~~~~a~~~LA~iy~~lG~~eeAl~~yeka 552 (954)
...+..+.+|.||..++++++|+..++.+
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11368899999999999999999998764
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0023 Score=59.96 Aligned_cols=90 Identities=10% Similarity=0.015 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhcCHH
Q 002199 736 RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIAD---AIADCSLAMALD-E-NYTKAVSRRAALHEMIRDYT 810 (954)
Q Consensus 736 ~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~ee---Ai~~~ekAL~ld-P-~~~~al~~lA~ly~~lg~~e 810 (954)
....+...|.+++..+ +....+.+++|+++.+..+... +|..++..+..+ | ..-+.+|.+|..++++|+|+
T Consensus 16 ~l~~~~~~y~~e~~~~----~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG----SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHS----CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhccC----CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 3445666777777665 5677888899999988776555 999999988876 5 56788999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHH
Q 002199 811 QAASDLQRLVSILENQSAE 829 (954)
Q Consensus 811 eAi~~~ekAL~l~p~~~~~ 829 (954)
+|+.+++.+|++.|++.++
T Consensus 92 ~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhCCCCHHH
Confidence 9999999999996665443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.029 Score=65.55 Aligned_cols=160 Identities=9% Similarity=0.010 Sum_probs=120.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcccccCCchHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHH
Q 002199 451 WRLRGNQAYKNNNLTEAEDFYTQGINSV--PLSETAGCCIKPLVLCYSNRAATRISLG---------RMREALEDCMMAA 519 (954)
Q Consensus 451 l~~~G~~~~~~g~y~eAi~~y~kAL~~~--P~~~~~~~~~~~la~~~~~lA~~y~~lg---------~~eeAl~~~~kAL 519 (954)
+...=..+.+.|++++|+.+|+++.+.. |+. ..|..+-.++...+ ..++|++.|+...
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~-----------~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~ 97 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQ-----------YHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCH-----------HHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-----------hHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH
Confidence 3444467789999999999999998763 332 56666655555443 3688999998877
Q ss_pred hcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--chhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCh
Q 002199 520 TVD--PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNS--AAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTS 595 (954)
Q Consensus 520 el~--P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l--~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~ 595 (954)
... | +..+|..+-..|.+.|++++|+..|++.... .|+ ...+-.+...+...|+.
T Consensus 98 ~~G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd--------------------~~tyn~lI~~~~~~g~~ 156 (501)
T 4g26_A 98 VDKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR--------------------LRSYGPALFGFCRKGDA 156 (501)
T ss_dssp HTTCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC--------------------HHHHHHHHHHHHHTTCH
T ss_pred HhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--------------------cceehHHHHHHHHCCCH
Confidence 653 4 4568889999999999999999999998764 343 33455566677788888
Q ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHhchh
Q 002199 596 EAASSALERINEALSIS-SCSEKLLEMKADALYMLRKYEEAIQLCEHTLPV 645 (954)
Q Consensus 596 ~~a~eAL~~l~kaL~~~-P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l 645 (954)
+ +|+..+.+..... .-+...|..+-.+|...|++++|..++++..+.
T Consensus 157 ~---~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 157 D---KAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp H---HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 8 6777777776543 225667888899999999999999999987654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0065 Score=59.41 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcc---C--CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------C-
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNI---E--SRPFAAICFCNRAAALQALGQIADAIADCSLAMALD------E- 790 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~---~--~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld------P- 790 (954)
.+......++..+.|+.|+-....++.+.. + .+...+.++..+|.+++..++|..|+..|++||.+. +
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 345567778899999999999999887742 1 123567789999999999999999999999997542 1
Q ss_pred ------------------CCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 791 ------------------NYTKAVSRRAALHEMIRDYTQAASDLQR 818 (954)
Q Consensus 791 ------------------~~~~al~~lA~ly~~lg~~eeAi~~~ek 818 (954)
...+..|.+|.||..++++++|+..++.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1236889999999999999999998764
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.12 Score=58.16 Aligned_cols=124 Identities=11% Similarity=-0.090 Sum_probs=84.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 671 RLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALST 750 (954)
Q Consensus 671 ~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l 750 (954)
..+|.+|+..|+|.+|+..+.+.++.-..... ....+..+.....+|...+++.++...|.+|...
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd--------------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDD--------------KNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC--------------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc--------------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 36788999999999999998887764322111 1123445556778889999999999999998766
Q ss_pred cc---CCchhhHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhcC
Q 002199 751 NI---ESRPFAAICFCNRAAALQ-ALGQIADAIADCSLAMALD-----ENYTKAVSRRAALHEMIRD 808 (954)
Q Consensus 751 ~~---~~~p~~a~~~~~lA~~y~-~lg~~eeAi~~~ekAL~ld-----P~~~~al~~lA~ly~~lg~ 808 (954)
.. .++...+.+...-|.+++ ..++|.+|..+|-.++.-. |....++..++.+.+..++
T Consensus 169 ~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 169 ANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 31 122356777777888888 8999999999998887432 1122344445555555555
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.2 Score=56.36 Aligned_cols=176 Identities=15% Similarity=0.051 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 617 KLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQV 696 (954)
Q Consensus 617 ~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l 696 (954)
.+.+.+|.+|...|++++-..++......-+.-.. .++.+..+..+..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~k--------------------------------ak~~k~v~~l~~~ 67 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISK--------------------------------AKAAKLVRSLVDM 67 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCH--------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhch--------------------------------HHHHHHHHHHHHH
Confidence 45678899999999999988888776554332111 0111222222221
Q ss_pred C---CCCcchhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--CCchhhHHHHHHHHH
Q 002199 697 G---SISDRYGSEILESSMSLAGTVRAL----LHHKSAGNEAFKSGRYTEAVEHYTVALSTNI--ESRPFAAICFCNRAA 767 (954)
Q Consensus 697 ~---p~~~~~~~~~l~~~~~l~~~~~~~----~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~--~~~p~~a~~~~~lA~ 767 (954)
. |........+...++.+....+.. ..-..+|..|+..|+|.+|+..+.+.+.... ++......++.....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~ 147 (394)
T 3txn_A 68 FLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESK 147 (394)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 1 222221222222223332222111 1223689999999999999999999887532 234567788888999
Q ss_pred HHHHhcCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhh
Q 002199 768 ALQALGQIADAIADCSLAMALD---ENY----TKAVSRRAALHE-MIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 768 ~y~~lg~~eeAi~~~ekAL~ld---P~~----~~al~~lA~ly~-~lg~~eeAi~~~ekAL~l~p 824 (954)
+|..++++.++...+.+|.... +.+ +.....-|.+++ ..++|..|..+|-.+++-+.
T Consensus 148 ~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 148 TYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 9999999999999999987553 122 233444578888 89999999999998876554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.024 Score=54.34 Aligned_cols=110 Identities=17% Similarity=0.128 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 446 ETCEMWRLRGNQAYKNNNL------TEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 446 ~~ae~l~~~G~~~~~~g~y------~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
...+.|.......-+.|+. ++-++.|++|+...|... ...-...+.+|...|.. ...++.++|.+.|+.++
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k--~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK--YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG--GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc--cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 3456676666666777888 888999999999988753 12233457777777755 67799999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchh
Q 002199 520 TVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAA 558 (954)
Q Consensus 520 el~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~ 558 (954)
.+...++.+|+..|..-.++|+...|...+.+++.+.|.
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999885
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.042 Score=51.62 Aligned_cols=80 Identities=11% Similarity=0.016 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHcCCH---HHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002199 722 LHHKSAGNEAFKSGRY---TEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSR 798 (954)
Q Consensus 722 ~~~~~lG~~~~~~g~~---eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~ 798 (954)
...++.|..+.+..+. .++|..++..+...| ...-.+++.+|..++++|+|++|.++++.+|++.|++.+|...
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~---~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE---SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc---chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3455677777777654 478999999888762 3578899999999999999999999999999999999888766
Q ss_pred HHHHHH
Q 002199 799 RAALHE 804 (954)
Q Consensus 799 lA~ly~ 804 (954)
...+-.
T Consensus 118 k~~Ie~ 123 (134)
T 3o48_A 118 KSMVED 123 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.18 Score=61.70 Aligned_cols=29 Identities=17% Similarity=0.110 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHh
Q 002199 614 CSEKLLEMKADALYMLRKYEEAIQLCEHT 642 (954)
Q Consensus 614 ~~~~~~~~lA~~~~~lg~~eeAi~~~eka 642 (954)
.+...|..+|+.++..++++.|+.+|.++
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34556666666666666666666665554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.051 Score=51.71 Aligned_cols=77 Identities=12% Similarity=0.010 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRY---TEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRR 799 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~---eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~l 799 (954)
..++.|+.+...... .++|.+++..+...| ...-.+++.+|..++++|+|.+|.++++.+|+++|++.+|....
T Consensus 41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~---~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE---SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC---STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc---cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 455677777776654 468888888888663 25778899999999999999999999999999999998876554
Q ss_pred HHH
Q 002199 800 AAL 802 (954)
Q Consensus 800 A~l 802 (954)
..+
T Consensus 118 ~~I 120 (144)
T 1y8m_A 118 SMV 120 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.035 Score=52.83 Aligned_cols=80 Identities=11% Similarity=-0.077 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 002199 447 TCEMWRLRGNQAYKNNNL---TEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDP 523 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y---~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P 523 (954)
..++.++.|..+.+..+- .++|.+++..+...|... -.+++.+|..++++|+|.+|+.+++.+|++.|
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~---------RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR---------RECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTH---------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccch---------hHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 456677888888887654 479999999999888654 38999999999999999999999999999999
Q ss_pred CcHHHHHHHHHH
Q 002199 524 NFLKVYMRAAKC 535 (954)
Q Consensus 524 ~~~~a~~~LA~i 535 (954)
++..+......+
T Consensus 109 ~n~QA~~Lk~~I 120 (144)
T 1y8m_A 109 NNKQVGALKSMV 120 (144)
T ss_dssp CCHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 998776554433
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.033 Score=52.38 Aligned_cols=79 Identities=10% Similarity=-0.108 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 448 CEMWRLRGNQAYKNNN---LTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~---y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
..+.++.|..+.+..+ ..++|.+++..++..|... -.+++.+|..++++|+|++|+.+++.+|++.|+
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~---------Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR---------RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchh---------HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 4567778888887764 4579999999998887543 389999999999999999999999999999999
Q ss_pred cHHHHHHHHHH
Q 002199 525 FLKVYMRAAKC 535 (954)
Q Consensus 525 ~~~a~~~LA~i 535 (954)
+..|......+
T Consensus 111 N~QA~~Lk~~I 121 (134)
T 3o48_A 111 NKQVGALKSMV 121 (134)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 98776655443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.25 Score=60.33 Aligned_cols=19 Identities=21% Similarity=-0.031 Sum_probs=9.6
Q ss_pred HHHHHHHHHcCCHHHHHHH
Q 002199 496 SNRAATRISLGRMREALED 514 (954)
Q Consensus 496 ~~lA~~y~~lg~~eeAl~~ 514 (954)
...+..+...|.+++|++.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~ 651 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNI 651 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCChHHheec
Confidence 3444445555555555543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.12 Score=58.30 Aligned_cols=99 Identities=18% Similarity=0.143 Sum_probs=80.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCC-------c-----------hhhHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIES-------R-----------PFAAICFCNRAAALQALGQIADAIADCSLA 785 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~-------~-----------p~~a~~~~~lA~~y~~lg~~eeAi~~~ekA 785 (954)
+...|......++.+.|+..+.+|+.+.... . .....+...++.++...|++.+|+..+..+
T Consensus 118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~ 197 (388)
T 2ff4_A 118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL 197 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344555667899999999999999884211 0 112234556778888999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 786 MALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 786 L~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
+..+|-+..++..+-.+|...|+..+|+..|+++.+.
T Consensus 198 ~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 198 TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988776
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.047 Score=66.37 Aligned_cols=61 Identities=20% Similarity=0.314 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 616 EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKL 693 (954)
Q Consensus 616 ~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~ka 693 (954)
..++...++.++..|+|+-|+.+.++++...|..+. .|+.|+.+|..+|+|+.|+-.+..+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~-----------------tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFE-----------------SWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhH-----------------HHHHHHHHHHHhccHHHHHHHHhcC
Confidence 346777788899999999999999999999998876 8999999999999999999988876
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.15 Score=57.33 Aligned_cols=110 Identities=12% Similarity=0.123 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccccc----CCch--------HHHHHHHHHHHHHHcCCHHHHH
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGC----CIKP--------LVLCYSNRAATRISLGRMREAL 512 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~----~~~~--------la~~~~~lA~~y~~lg~~eeAl 512 (954)
-...+.+...|......|+...|+..|.+|+.+.....-.+. |... ...++..++.+++..|++.+|+
T Consensus 112 ~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~ 191 (388)
T 2ff4_A 112 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI 191 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 344556667777777889999999999999998754432211 1111 3456667888899999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 513 EDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLN 554 (954)
Q Consensus 513 ~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~ 554 (954)
..+..++..+|-+-.+|..+-.+|...|+..+|+..|+++..
T Consensus 192 ~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 192 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998755
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.35 E-value=0.21 Score=47.96 Aligned_cols=117 Identities=6% Similarity=-0.118 Sum_probs=87.1
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 002199 520 TVDPNFLKVYMRAAKCHLVLGEI------ENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQK 593 (954)
Q Consensus 520 el~P~~~~a~~~LA~iy~~lG~~------eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g 593 (954)
-+.|++++.|+.....+...|+. +.-++.|++|+..-|... .+ ...+. +.-|+..|.. ...+
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~--------~wrrY--I~LWIrYA~~-~ei~ 74 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YG--------QNESF--ARIQVRFAEL-KAIQ 74 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GT--------TCHHH--HHHHHHHHHH-HHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-cc--------cHHHH--HHHHHHHHHH-HHhc
Confidence 46799999999999999999999 889999999999777532 11 11111 1223333322 3446
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhh
Q 002199 594 TSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFA 651 (954)
Q Consensus 594 ~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~ 651 (954)
+.+ +|-+.|+.++.+....+.+|.+.|+.-.++|+...|..++.+++.+.|...+
T Consensus 75 D~d---~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 75 EPD---DARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp CGG---GCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred CHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 666 6777888888778788999999999999999999999999999999987643
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=4.4 Score=48.20 Aligned_cols=129 Identities=10% Similarity=-0.030 Sum_probs=81.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 002199 672 LISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 672 ~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~ 751 (954)
.++...+...+.+.|...+.........+.. ........++..++..+...++..++.++....
T Consensus 219 ~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~----------------~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~ 282 (618)
T 1qsa_A 219 AVAFASVARQDAENARLMIPSLAQAQQLNED----------------QIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS 282 (618)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHH----------------HHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCHHHHHHHHHhhhhccCCCHH----------------HHHHHHHHHHHHHHHcCCChHHHHHHHhccccC
Confidence 3444455566888998888876543322211 111122234444555554667777777765433
Q ss_pred cCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 752 IESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVS 821 (954)
Q Consensus 752 ~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~ 821 (954)
..... ...++...+..+++..|..+|...-.-......+.|.+|.++..+|+.++|...|+++..
T Consensus 283 ----~~~~~-~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 283 ----QSTSL-IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp ----CCHHH-HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ----CChHH-HHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 11111 223333345679999999999775443335688899999999999999999999999875
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.14 Score=62.13 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002199 759 AICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRL 819 (954)
Q Consensus 759 a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekA 819 (954)
..++..-+..++..|+|+-|+...++|+...|.....|+.|+.+|..+|+|+.|+-.++.+
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4456666777888999999999999999999999999999999999999999999877654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.68 E-value=2.4 Score=48.37 Aligned_cols=103 Identities=12% Similarity=0.014 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--cCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCC----
Q 002199 722 LHHKSAGNEAFKSGRYTEAVEHYTVALSTN--IESRPFAAICFCNRAAALQALGQIADAIADCSLAMA---LDENY---- 792 (954)
Q Consensus 722 ~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~--~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~---ldP~~---- 792 (954)
.....++.++...|+|.+|...+.....-. ..+......++.....+|+..+++..|...+.++.. -.+..
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 334568999999999999999999876432 122345677888889999999999999999998742 12333
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 793 TKAVSRRAALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 793 ~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
...+...|.++...++|.+|..+|..++....
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~ 249 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQTDA 249 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 34566779999999999999999999987643
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.52 E-value=2.2 Score=48.65 Aligned_cols=106 Identities=11% Similarity=-0.031 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
....|+.+|...|++.+|...+.....-.-.. ......+..+.....+++..++|.+|...+.++.
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~--------------~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGS--------------MEMSEKIQFILEQMELSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS--------------SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--------------ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45678999999999999999999875321111 1122345566677888999999999999999975
Q ss_pred hh---ccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 749 ST---NIESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 749 ~l---~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
.. .+..+.....++...|.++...++|.+|..+|..++..
T Consensus 205 ~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 205 KKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 32 22222356678888899999999999999999988754
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.48 E-value=1.9 Score=41.91 Aligned_cols=93 Identities=14% Similarity=0.004 Sum_probs=74.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--c-------
Q 002199 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT--V------- 521 (954)
Q Consensus 451 l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe--l------- 521 (954)
-..++..++-.|+|..|+-++.. .+. +...+..+.||..+++|..|+..++..|+ +
T Consensus 36 ~lL~~I~LyyngEY~R~Lf~L~~------lNT---------~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d 100 (242)
T 3kae_A 36 RMLMSIVLYLNGEYTRALFHLHK------LNT---------CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVD 100 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT------CCB---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCC
T ss_pred HhhhhhhhhhcchHhHHHHHHHh------cch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc
Confidence 35678889999999998876542 222 37788899999999999999999999993 2
Q ss_pred --------CCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchh
Q 002199 522 --------DPNFL-KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAA 558 (954)
Q Consensus 522 --------~P~~~-~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~ 558 (954)
+|.+- -.+..+|.++.+.|.-+||+.+|.......|-
T Consensus 101 ~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 101 ARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp HHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred cccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 23333 34667899999999999999999999988773
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=93.48 E-value=1.4 Score=46.52 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=86.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHH
Q 002199 501 TRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVT 580 (954)
Q Consensus 501 ~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~ 580 (954)
.+++.|..++|++.+...|+.+|.+......+..++.-.|+++.|..-++.+.+++|.....-. .+..+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~-------~yr~l---- 74 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS-------QLRHL---- 74 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHH-------HHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHH-------HHHHH----
Confidence 4577899999999999999999999999999999999999999999999999999997521110 00000
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHh--------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 581 EYINCSGKLLEQKTSEAASSALERINEALS--------ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 581 ~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~--------~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
+.|...=.+.+. ..|.........+......|+.++|..+-.++++..|..
T Consensus 75 ------------------I~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 75 ------------------VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp ------------------HHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred ------------------HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 001110011111 112223344556777778899999999999999887654
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=93.20 E-value=1.9 Score=41.90 Aligned_cols=186 Identities=13% Similarity=0.049 Sum_probs=107.4
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002199 612 SSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQ 691 (954)
Q Consensus 612 ~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~ 691 (954)
-|..++....++..++..|+|..|+-++...-... +.+.-+.+|..+.+|..|+..++
T Consensus 29 ~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~lNT~T----------------------s~YYk~LCy~klKdYkkA~~~le 86 (242)
T 3kae_A 29 LPCKPEYRMLMSIVLYLNGEYTRALFHLHKLNTCT----------------------SKYYESLCYKKKKDYKKAIKSLE 86 (242)
T ss_dssp C----CTHHHHHHHHHHTTCHHHHHHHHHTCCBHH----------------------HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCChHHHhhhhhhhhhcchHhHHHHHHHhcchHH----------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556777888999999999999988776532211 33456789999999999999999
Q ss_pred HHHh--hC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHH---
Q 002199 692 KLEQ--VG--SISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCN--- 764 (954)
Q Consensus 692 kal~--l~--p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~--- 764 (954)
+.+. ++ |+..... ... +......-.-+..+|.++.+.|+-++||.+|.......+--.|..-.++.|
T Consensus 87 ~il~~kvd~d~~~d~~~----~~f--fvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp 160 (242)
T 3kae_A 87 SILEGKVERDPDVDARI----QEM--FVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVP 160 (242)
T ss_dssp HHHTTCSBCCCCCCHHH----HTT--SCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCC
T ss_pred HHHhcccccCccccccc----cee--eeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCC
Confidence 9994 33 2221110 000 000011112345579999999999999999999887763221211111111
Q ss_pred ----------HHHHHHHhcCHHHHHHH--------HHHHHHhCCCCHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 765 ----------RAAALQALGQIADAIAD--------CSLAMALDENYTKA-VSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 765 ----------lA~~y~~lg~~eeAi~~--------~ekAL~ldP~~~~a-l~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
++.--.+...+...+.. .++-...-|..... ....|.-|+.+|-.++...+|..+-+.+|.
T Consensus 161 ~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 161 QKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp CCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred cccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 00000000111111111 22222233543322 234567889999999999999999888663
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.73 E-value=2.7 Score=41.47 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=39.9
Q ss_pred HHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 624 DALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLE 694 (954)
Q Consensus 624 ~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal 694 (954)
.+.+..|+++.|.++.+.+ + +.. .|..||...+..|+++-|..+|+++-
T Consensus 13 ~LAL~lg~l~~A~e~a~~l---~--~~~-----------------~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL---N--DSI-----------------TWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH---C--CHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHh---C--CHH-----------------HHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 4567899999999988765 1 111 58899999999999999999999874
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.86 E-value=0.5 Score=53.81 Aligned_cols=101 Identities=9% Similarity=0.008 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD---PN 524 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~---P~ 524 (954)
..++..+|..|++.|+++.|+++|.++........ ..+.++..+..+++..++|..+...+.++..+. ++
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~-------~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d 203 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG-------AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD 203 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC-------SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH-------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC
Confidence 34678899999999999999999999998765542 457889999999999999999999999987652 22
Q ss_pred c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002199 525 F---LKVYMRAAKCHLVLGEIENAQHYYHKLLNS 555 (954)
Q Consensus 525 ~---~~a~~~LA~iy~~lG~~eeAl~~yekaL~l 555 (954)
. .......|.++...++|.+|...|-.++.-
T Consensus 204 ~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 204 WERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp THHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1 234556678888899999999999887654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.71 E-value=3.5 Score=40.67 Aligned_cols=50 Identities=18% Similarity=0.209 Sum_probs=43.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 500 ATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLN 554 (954)
Q Consensus 500 ~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~ 554 (954)
...+..|+++.|.+.++.. +....|..||...+..|+++-|..+|.++-.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 3446899999999988765 5678999999999999999999999998644
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.52 E-value=1.6 Score=56.18 Aligned_cols=188 Identities=13% Similarity=0.079 Sum_probs=107.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccc-------------ccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002199 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETA-------------GCCIKPLVLCYSNRAATRISLGRMREALEDCMM 517 (954)
Q Consensus 451 l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~-------------~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~k 517 (954)
-+.+|..++..|++++|..+|.+|-......... ......+...|+.....+.+.+.++.+++..+.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4889999999999999999999874322111000 001112356778888899999999999999999
Q ss_pred HHhcCC-CcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 002199 518 AATVDP-NFL----KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQ 592 (954)
Q Consensus 518 ALel~P-~~~----~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~ 592 (954)
||+..+ +.. ..|.++-..++.+|+|++|...+... |+....+..+......+-....+...+. +--.
T Consensus 925 Ai~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~----pd~~~r~~cLr~LV~~lce~~~~~~L~~----lpf~ 996 (1139)
T 4fhn_B 925 ADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL----STTPLKKSCLLDFVNQLTKQGKINQLLN----YSMP 996 (1139)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH----HHSSSCHHHHHHHHHHHHHHCCHHHHHH----HTTT
T ss_pred HHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHhCCChhhhhC----CCCc
Confidence 998754 332 25778889999999999997766432 3322222222222222221111111111 1113
Q ss_pred cChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHhchhh
Q 002199 593 KTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAI-QLCEHTLPVA 646 (954)
Q Consensus 593 g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi-~~~ekaL~l~ 646 (954)
|..++..+.|..-.+....-...+.+|..|=-.++..|+|..|. ..|+++.++.
T Consensus 997 gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~ 1051 (1139)
T 4fhn_B 997 TLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRYI 1051 (1139)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHhh
Confidence 44444444444332222111122345555555666777776554 4566666554
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.43 E-value=1.3 Score=51.28 Aligned_cols=80 Identities=19% Similarity=0.120 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Q 002199 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKV 528 (954)
Q Consensus 449 e~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a 528 (954)
..+..+|+.......+..|..+|.+|+.+.|.+. ..|..+|.+....|+.-+|+-+|.++|....-++.+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G----------~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a 222 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG----------QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA 222 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS----------HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC----------chHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhH
Confidence 3667889999889999999999999999999998 899999999999999999999999999887778888
Q ss_pred HHHHHHHHHH
Q 002199 529 YMRAAKCHLV 538 (954)
Q Consensus 529 ~~~LA~iy~~ 538 (954)
..++..++..
T Consensus 223 ~~nL~~~f~~ 232 (497)
T 1ya0_A 223 STNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888776654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=90.27 E-value=2.5 Score=44.55 Aligned_cols=111 Identities=14% Similarity=0.065 Sum_probs=81.3
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcc------
Q 002199 587 GKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSV------ 660 (954)
Q Consensus 587 ~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~------ 660 (954)
..++..+..+ +++..+...++..|.+......+.++|.-.|+|+.|...++.+.+++|............+
T Consensus 5 ~~ll~~g~L~---~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R 81 (273)
T 1zbp_A 5 KNALSEGQLQ---QALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR 81 (273)
T ss_dssp HHHTTTTCHH---HHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHH---HHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHH
Confidence 3456677777 7888889999999999999999999999999999999999999999997654332211111
Q ss_pred -------------hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q 002199 661 -------------TYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISD 701 (954)
Q Consensus 661 -------------~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~ 701 (954)
..+.. -.....-+......|+.++|...-.++++..|...
T Consensus 82 ~~vfaG~~~P~~~g~~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 82 KDFAQGAATAKVLGENEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHTTSCCCEECCCSCHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHcCCCCCCCCCCCHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 00000 11233345666678899999998888888776554
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.17 E-value=5.3 Score=46.06 Aligned_cols=149 Identities=9% Similarity=-0.029 Sum_probs=62.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh-----------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHH
Q 002199 499 AATRISLGRMREALEDCMMAAT-----------VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITI 567 (954)
Q Consensus 499 A~~y~~lg~~eeAl~~~~kALe-----------l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ 567 (954)
-..++..++|++|.++....+. +|+-..++|+..+.++...|+..+..........+.|..
T Consensus 143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~L-------- 214 (523)
T 4b4t_S 143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTM-------- 214 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHH--------
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHH--------
Confidence 3345677889998888776651 234456777777777777777766655544444332210
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHH-HhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHhchh
Q 002199 568 EAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEA-LSISSC-SEKLLEMKADALYMLRKYEEAIQLCEHTLPV 645 (954)
Q Consensus 568 ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~ka-L~~~P~-~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l 645 (954)
+..++.+ +..++. ...++..+-+.|+..+.|++|..+..++.
T Consensus 215 ----------------------------------l~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~-- 258 (523)
T 4b4t_S 215 ----------------------------------MKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE-- 258 (523)
T ss_dssp ----------------------------------HHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--
T ss_pred ----------------------------------HHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--
Confidence 1111111 122222 25577788889999999999999999885
Q ss_pred hhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q 002199 646 AEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISD 701 (954)
Q Consensus 646 ~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~ 701 (954)
.|.... ......+ .++.+|.++...++|.+|.+++..|+...|.+.
T Consensus 259 fP~~~~--------sn~q~~r--Y~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 259 YPHTDV--------SSSLEAR--YFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp SCTTTS--------CHHHHHH--HHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred CCcccC--------CHHHHHH--HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 232210 0111222 467789999999999999999999999877654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=89.88 E-value=24 Score=38.00 Aligned_cols=28 Identities=14% Similarity=-0.151 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 002199 614 CSEKLLEMKADALYMLRKYEEAIQLCEH 641 (954)
Q Consensus 614 ~~~~~~~~lA~~~~~lg~~eeAi~~~ek 641 (954)
.++.++..+|..|...+++.+|..+|-.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 5789999999999999999998887753
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.79 E-value=25 Score=38.15 Aligned_cols=27 Identities=11% Similarity=0.000 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHH
Q 002199 614 CSEKLLEMKADALYMLRKYEEAIQLCE 640 (954)
Q Consensus 614 ~~~~~~~~lA~~~~~lg~~eeAi~~~e 640 (954)
.++.++..+|..|+..+++.+|...|-
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 578899999999999999999888773
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.79 E-value=1.4 Score=51.02 Aligned_cols=79 Identities=14% Similarity=0.034 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAAL 802 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~l 802 (954)
.+..+|++..-...+..|..+|.+|+.+. |.....|+.||.+....|+.-+|+-+|-+++.....++.+..++..+
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~----P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLV----PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhC----CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 34568999999999999999999999999 88899999999999999999999999999998877788888888877
Q ss_pred HHH
Q 002199 803 HEM 805 (954)
Q Consensus 803 y~~ 805 (954)
+..
T Consensus 230 f~~ 232 (497)
T 1ya0_A 230 LSK 232 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.69 E-value=2.3 Score=48.27 Aligned_cols=104 Identities=13% Similarity=-0.056 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
++..+|..|+..|+++.|++.|.++......... .+..+.....+++..++|..|..++.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~-----------------kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA-----------------KIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS-----------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH-----------------HHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3567899999999999999999998775444332 23445556777888999999999999997
Q ss_pred hhcc--CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 002199 749 STNI--ESRPFAAICFCNRAAALQALGQIADAIADCSLAMALD 789 (954)
Q Consensus 749 ~l~~--~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld 789 (954)
.+.. .+......+....|.+++..++|.+|...|-.++.-.
T Consensus 196 ~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 196 SMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 6632 2223344566667888889999999999998887653
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.32 E-value=16 Score=42.08 Aligned_cols=112 Identities=8% Similarity=-0.025 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHH
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAE----------DFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALED 514 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi----------~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~ 514 (954)
.-.+..|+..+..+-..|+....+ ..+-.+++..--.. .....+.++..+-..|+..+.|++|...
T Consensus 178 ~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~----D~~~qa~l~nllLRnYL~~~~y~qA~~l 253 (523)
T 4b4t_S 178 LINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH----DNETKAMLINLILRDFLNNGEVDSASDF 253 (523)
T ss_dssp -------------------------CHHHHHHHHTHHHHHHHHCCSCS----SSCHHHHHHHHHHHHHHHSSCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc----CcchhHHHHHHHHHHHHccCcHHHHHHH
Confidence 335566666666666666665532 23333333321111 1234578888999999999999999999
Q ss_pred HHHHHhcCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 515 CMMAATVDP-----NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 515 ~~kALel~P-----~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
..++.-... .....++.+|+++...++|.+|.+++..|+...|...
T Consensus 254 vsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 254 ISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 999853211 1256778899999999999999999999999887553
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.63 E-value=4.9 Score=51.57 Aligned_cols=169 Identities=11% Similarity=0.016 Sum_probs=99.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002199 619 LEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGS 698 (954)
Q Consensus 619 ~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p 698 (954)
...+...+...+.++-|.++.. ..|.+. +..+.+|.+|+..|++++|..+|+++..-..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~----~~~~~~-----------------~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~ 873 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIG----WLNSDP-----------------IAVYLKALIYLKSKEAVKAVRCFKTTSLVLY 873 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHH----HSCCCH-----------------HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCT
T ss_pred HHHHHHHHHHhhhHHHHHHHhh----hccCCc-----------------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhc
Confidence 3345556777777766654332 222221 2457899999999999999999998743221
Q ss_pred CCcchhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchh-hHHHHHHHHHHHHHhc
Q 002199 699 ISDRYGSEILESSMSLAGT----VRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPF-AAICFCNRAAALQALG 773 (954)
Q Consensus 699 ~~~~~~~~~l~~~~~l~~~----~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~-~a~~~~~lA~~y~~lg 773 (954)
...... ..+.....+... ......|.....++.+.+.++.+++....||+.....++. ....|.++=..++.++
T Consensus 874 ~~~~l~-~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~ 952 (1139)
T 4fhn_B 874 SHTSQF-AVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 952 (1139)
T ss_dssp TCCCSC-SSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccchhh-hhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhC
Confidence 111101 101111111000 0011235556777888899999999999999876544333 3447888888899999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 002199 774 QIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYT 810 (954)
Q Consensus 774 ~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~e 810 (954)
+|++|...+...=. ...-...+..+-......+..+
T Consensus 953 ~ye~Ay~aL~~~pd-~~~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 953 KFDAAHVALMVLST-TPLKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp CSGGGGHHHHHHHH-SSSCHHHHHHHHHHHHHHCCHH
T ss_pred CHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhCCChh
Confidence 99999877754321 1223445555555455544433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.56 E-value=5.9 Score=49.41 Aligned_cols=99 Identities=4% Similarity=-0.104 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL--DENYTKAVSRRA 800 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l--dP~~~~al~~lA 800 (954)
.+..+-..|.+.|+.++|...|............-+...|..+-..|.+.|++++|+..|++..+. .| +...|..+-
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntLI 207 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHH
Confidence 466678889999999999999987653310001336778999999999999999999999998765 35 577788888
Q ss_pred HHHHHhcC-HHHHHHHHHHHHHH
Q 002199 801 ALHEMIRD-YTQAASDLQRLVSI 822 (954)
Q Consensus 801 ~ly~~lg~-~eeAi~~~ekAL~l 822 (954)
.++.+.|+ .++|.+.|++..+.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHc
Confidence 88999998 47888888877654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=84.29 E-value=73 Score=37.65 Aligned_cols=163 Identities=13% Similarity=-0.067 Sum_probs=96.3
Q ss_pred HHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q 002199 622 KADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISD 701 (954)
Q Consensus 622 lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~ 701 (954)
.+...+...+.+.|...+........-+ .....+.+..++..+...+...++...+.+...... +.
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~-------------~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~-~~ 285 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQQLN-------------EDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-ST 285 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCC-------------HHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-CH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhccCCC-------------HHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC-Ch
Confidence 3444445557788888776654321111 011112333445444555535566666666543221 11
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHH
Q 002199 702 RYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIAD 781 (954)
Q Consensus 702 ~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~ 781 (954)
. +..+ ..+ ..++.+++..|..+|...-... .......+.+|.++..+|+.++|...
T Consensus 286 ~------------------~~e~-~~r-~Alr~~d~~~a~~~~~~l~~~~----~~~~r~~YW~~ra~~~~g~~~~a~~~ 341 (618)
T 1qsa_A 286 S------------------LIER-RVR-MALGTGDRRGLNTWLARLPMEA----KEKDEWRYWQADLLLERGREAEAKEI 341 (618)
T ss_dssp H------------------HHHH-HHH-HHHHHTCHHHHHHHHHHSCTTG----GGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred H------------------HHHH-HHH-HHHHCCCHHHHHHHHHHccccc----cccHhHHHHHHHHHHHcCCHHHHHHH
Confidence 1 0111 123 3456799999999997653322 35677788899999999999999999
Q ss_pred HHHHHHhC-----------------------CCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002199 782 CSLAMALD-----------------------ENY-----TKAVSRRAALHEMIRDYTQAASDLQRLVSI 822 (954)
Q Consensus 782 ~ekAL~ld-----------------------P~~-----~~al~~lA~ly~~lg~~eeAi~~~ekAL~l 822 (954)
|+++..-. +.. ....+.++..++.+|....|...+..++..
T Consensus 342 ~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 342 LHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp HHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 98876421 000 112355677788889988888888777654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 954 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-15 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-08 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-08 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 4e-08 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 7e-08 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 9e-05 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 9e-08 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 4e-06 | |
| d1fpoa1 | 76 | a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma | 1e-06 | |
| d1fafa_ | 79 | a.2.3.1 (A:) Large T antigen, the N-terminal J dom | 2e-06 | |
| d1nz6a_ | 98 | a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T | 3e-06 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 7e-06 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 0.004 | |
| d1xbla_ | 75 | a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain | 8e-06 | |
| d1gh6a_ | 114 | a.2.3.1 (A:) Large T antigen, the N-terminal J dom | 8e-06 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 1e-05 | |
| d1hdja_ | 77 | a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9 | 1e-05 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-05 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 0.001 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 5e-05 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 0.001 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 5e-05 | |
| d1iura_ | 88 | a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human | 7e-05 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 9e-05 | |
| d1wjza_ | 94 | a.2.3.1 (A:) CSL-type zinc finger-containing prote | 1e-04 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 4e-04 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 4e-04 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 0.002 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 0.003 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 0.003 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.2 bits (186), Expect = 4e-15
Identities = 54/397 (13%), Positives = 103/397 (25%), Gaps = 57/397 (14%)
Query: 455 GNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALED 514
++ Y+ + AE Q P + ++ R+ +
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGV----------LLLLSSIHFQCRRLDRSAHF 55
Query: 515 CMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQ 574
+A +P + Y + G+++ A +Y L A
Sbjct: 56 STLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 115
Query: 575 K------------AQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMK 622
Y S K A +A+
Sbjct: 116 DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNL 175
Query: 623 ADALYMLRKYEEAIQLCEHTL------PVAEKNFASVLADNGSVTYSLARLWR------- 669
+ AI E + A N +VL + ++A R
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235
Query: 670 ----WRLISKSYFCIGKLEVALDLLQK--------------LEQVGSISDRYGSEILESS 711
++ Y+ G +++A+D ++ L +
Sbjct: 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 712 MSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA 771
+L + N + G EAV Y AL P A N A+ LQ
Sbjct: 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF----PEFAAAHSNLASVLQQ 351
Query: 772 LGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRD 808
G++ +A+ A+ + + A S + ++D
Sbjct: 352 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.1 bits (131), Expect = 2e-08
Identities = 42/338 (12%), Positives = 96/338 (28%), Gaps = 13/338 (3%)
Query: 497 NRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL--N 554
A G A CM +P+ V + + H ++ + H+ + N
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 555 SAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSC 614
A + G + K ++AL +
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 615 SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLIS 674
L+ D + ++ ++ +
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183
Query: 675 KSYFCIGKLEVALDL-------LQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSA 727
+ + I E A+ L L V + + + +L+ + + H +
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
++ G A++ Y A+ P +CN A AL+ G +A+A + A+
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQ----PHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299
Query: 788 LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825
L + +++ A + + +A ++ + +
Sbjct: 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.9 bits (128), Expect = 4e-08
Identities = 29/220 (13%), Positives = 56/220 (25%), Gaps = 35/220 (15%)
Query: 424 QNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSET 483
Q + A ++ V + + GN + A Y + ++ P
Sbjct: 182 QGEIWLAIHHFEKAV---TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238
Query: 484 AGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIE 543
+ N A G + A++ A + P+F Y A G +
Sbjct: 239 V----------HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288
Query: 544 NAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603
A+ Y+ L ++ A+
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE----------------------AVR 326
Query: 604 RINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTL 643
+AL + A L K +EA+ + +
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 53.8 bits (127), Expect = 4e-08
Identities = 42/388 (10%), Positives = 92/388 (23%), Gaps = 38/388 (9%)
Query: 449 EMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRM 508
E LR A + N EAE + +P ++ S G +
Sbjct: 13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYS-----RIVATSVLGEVLHCKGEL 67
Query: 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIE 568
+L + + + A L +E
Sbjct: 68 TRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE 127
Query: 569 AADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYM 628
+ ++ + + L++ + A S + +L + A
Sbjct: 128 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD 187
Query: 629 LRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALD 688
L + E+ L + + S ++ + G A +
Sbjct: 188 LDNARSQLNRLENLLGNGKYH-------------SDWISNANKVRVIYWQMTGDKAAAAN 234
Query: 689 LLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748
L+ + ++ + ++ G + A
Sbjct: 235 WLRHTAKPEFANNHF----------------LQGQWRNIARAQILLGEFEPAEIVLEELN 278
Query: 749 --STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMI 806
+ ++ G+ +DA A+ L T +S E +
Sbjct: 279 ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR-TGFISHFVIEGEAM 337
Query: 807 RDYTQAASDLQRLVSILENQSAEKAKQS 834
+ L L LE A++ +
Sbjct: 338 AQQLRQLIQLNTL-PELEQHRAQRILRE 364
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 52.7 bits (126), Expect = 7e-08
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 4/102 (3%)
Query: 728 GNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMA 787
A G+ +A+E A I++ P A + L G A ++
Sbjct: 3 WKNALSEGQLQQALELLIEA----IKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK 58
Query: 788 LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAE 829
L Y S+ L + + A + EN+
Sbjct: 59 LFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELT 100
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 43.1 bits (101), Expect = 9e-05
Identities = 15/138 (10%), Positives = 37/138 (26%), Gaps = 12/138 (8%)
Query: 454 RGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALE 513
+ A L +A + + I + P + S+ G A E
Sbjct: 2 QWKNALSEGQLQQALELLIEAIKASPKDASL----------RSSFIELLCIDGDFERADE 51
Query: 514 DCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGL 573
M + + P +L + ++ L + + + +
Sbjct: 52 QLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKS--LVSFNLS 109
Query: 574 QKAQKVTEYINCSGKLLE 591
+Q + + ++ E
Sbjct: 110 MVSQDYEQVSELALQIEE 127
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.1 bits (121), Expect = 9e-08
Identities = 41/187 (21%), Positives = 68/187 (36%), Gaps = 13/187 (6%)
Query: 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSL 784
K GN F +Y EA Y A++ N P A+ + NRA + Q A+ADC
Sbjct: 8 KEQGNRLFVGRKYPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 785 AMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSR 844
A+ LD KA + Y +A ++LQR S+ + Q
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD--------IPS 115
Query: 845 DLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQ 904
LR A + + E+ + + + + L + + + + + H D Q
Sbjct: 116 ALRIAKKKRWNSIEERRIHQESELHSYL-TRLIAAERERELEECQRNHEGHEDDGHIRAQ 174
Query: 905 EQEIRKA 911
+ I
Sbjct: 175 QACIEAK 181
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.5 bits (109), Expect = 4e-06
Identities = 27/200 (13%), Positives = 59/200 (29%), Gaps = 34/200 (17%)
Query: 439 SPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLC---- 494
SP+A + + +GN+ + EA Y + I PL L
Sbjct: 1 SPSA------QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP 54
Query: 495 --------------------YSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAK 534
+ ++ + EA+ + A ++ +
Sbjct: 55 EQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP 114
Query: 535 CHLVLGEIENAQHYYHKLLNSAAAV--CLDRRITIEAADGLQKAQKVTEYINCSGKLLEQ 592
L + + + + ++ + + L R I E L++ Q+ E G + Q
Sbjct: 115 SALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQ 174
Query: 593 KTS--EAASSALERINEALS 610
+ + ++E S
Sbjct: 175 QACIEAKHDKYMADMDELFS 194
|
| >d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSC20 (HSCB), N-terminal (J) domain species: Escherichia coli [TaxId: 562]
Score = 45.0 bits (106), Expect = 1e-06
Identities = 8/63 (12%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 866 LDFYLILGVK--ASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQNSHYGR 923
+D++ + G+ + ++ ++HPDK + Q +++ + + N +
Sbjct: 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60
Query: 924 SSD 926
Sbjct: 61 LRH 63
|
| >d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Large T antigen, the N-terminal J domain species: Murine polyomavirus [TaxId: 10634]
Score = 44.2 bits (104), Expect = 2e-06
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 856 MEEDAKKGEPLDFYLILGVK--ASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKA 911
M+ + + +L + +++AY++ +L HPDK + QE+
Sbjct: 1 MDRVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSL 58
|
| >d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Auxilin J-domain species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.5 bits (105), Expect = 3e-06
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 843 SRDLRQACRHLSSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY 902
R++R LS+M GE + +G+ T +KK YRKA L HPDK +
Sbjct: 15 ERNIRAL---LSTMHTVLWAGE--TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQ 69
Query: 903 DQEQEIRKATKE 914
EQ + E
Sbjct: 70 PYEQYAKMIFME 81
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (107), Expect = 7e-06
Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 11/121 (9%)
Query: 713 SLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQAL 772
SL + L ++ G A + A++ ++ + + ICF N L
Sbjct: 1 SLVEAIS--LWNE--GVLAADKKDWKGALDAFSAVQDPH------SRICF-NIGCMYTIL 49
Query: 773 GQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAK 832
+ +A + ++ D++ A +R L+ Y A DL+ + L K
Sbjct: 50 KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 109
Query: 833 Q 833
Sbjct: 110 I 110
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 0.004
Identities = 21/175 (12%), Positives = 49/175 (28%), Gaps = 28/175 (16%)
Query: 663 SLARLWRWRLISKSYFCIGKLEVALDLLQKLEQ-----------VGSISDRYGSEILESS 711
SL + ALD ++ + +I +
Sbjct: 1 SLVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFT 60
Query: 712 MSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTN------------IESRPFAA 759
S+ + + G +++ +Y A++ AL ++ + FA
Sbjct: 61 RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFAC 120
Query: 760 ICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAAS 814
N A + A +LA ++ K+ R + + + + +
Sbjct: 121 EVLYNIAFMYAKKEEWKKAEEQLALATSM-----KSEPRHSKIDKAMECVWKQKL 170
|
| >d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: DnaJ chaperone, N-terminal (J) domain species: Escherichia coli [TaxId: 562]
Score = 42.3 bits (99), Expect = 8e-06
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 860 AKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKES---P 916
AK+ D+Y ILGV + +I+KAY++ A+K+HPD+ + + K KE+
Sbjct: 1 AKQ----DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVL 56
Query: 917 QNSHYGRSSDAYGYA 931
+S + D YG+A
Sbjct: 57 TDSQKRAAYDQYGHA 71
|
| >d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Large T antigen, the N-terminal J domain species: Simian virus 40, Sv40 [TaxId: 10633]
Score = 43.6 bits (102), Expect = 8e-06
Identities = 18/102 (17%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
Query: 854 SSMEEDAKKGEPLDFYLILGVK--ASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKA 911
S M E++ +LG++ A ++KAY K + HPDK + ++ +++
Sbjct: 1 SHMREESL-----QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKM-NT 54
Query: 912 TKESPQNSHYGRSSDAYG-YACRSSRRQSRQDNWKTYGNSYS 952
+ ++ +G + + D W+ + N+++
Sbjct: 55 LYKKMEDGVKYAHQPDFGGFWDATEIPTYGTDEWEQWWNAFN 96
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 44.6 bits (104), Expect = 1e-05
Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 11/122 (9%)
Query: 712 MSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVA-----------LSTNIESRPFAAI 760
M + K G FK G+Y +AV Y + S F
Sbjct: 6 MDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 65
Query: 761 CFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLV 820
F N A L + A+ C A+ LD K + RR ++ ++ A D ++++
Sbjct: 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 125
Query: 821 SI 822
+
Sbjct: 126 EV 127
|
| >d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSP40 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (98), Expect = 1e-05
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATK--ESPQNSHYGRS 924
D+Y LG+ + +IK+AYR+ AL++HPDK E E++ ++ + + +
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 925 SDAYG 929
D YG
Sbjct: 64 FDRYG 68
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (99), Expect = 2e-05
Identities = 24/117 (20%), Positives = 37/117 (31%), Gaps = 11/117 (9%)
Query: 722 LHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIAD 781
L K GN+A+K + A++HY A E P N+AA G
Sbjct: 5 LKEKELGNDAYKKKDFDTALKHYDKA----KELDPTNMTYITNQAAVYFEKGDYNKCREL 60
Query: 782 CSLAMALDE-------NYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKA 831
C A+ + KA +R + Y A + ++ K
Sbjct: 61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 0.001
Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 19/129 (14%)
Query: 455 GNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALED 514
GN AYK + A Y + P + T +N+AA G + E
Sbjct: 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTY----------ITNQAAVYFEKGDYNKCREL 60
Query: 515 CMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITI----EAA 570
C A V + Y + AK + +G + Y A ++ + +
Sbjct: 61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKD-----AIHFYNKSLAEHRTPDVL 115
Query: 571 DGLQKAQKV 579
Q+A+K+
Sbjct: 116 KKCQQAEKI 124
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 42.3 bits (98), Expect = 5e-05
Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 6/114 (5%)
Query: 446 ETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCI------KPLVLCYSNRA 499
++ + GN+ +K N + EA Y + ++ +E I + C N A
Sbjct: 15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 74
Query: 500 ATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL 553
+A++ +D N +K + ++ G +E A+ +K
Sbjct: 75 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 128
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 38.1 bits (87), Expect = 0.001
Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 12/110 (10%)
Query: 725 KSAGNEAFKSGRYTEAVEHYTVALSTN------------IESRPFAAICFCNRAAALQAL 772
K GNE FK EA+ Y AL + + C N A
Sbjct: 21 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN 80
Query: 773 GQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
AI S + +D+N KA+ + + +A +L + S+
Sbjct: 81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 42.5 bits (99), Expect = 5e-05
Identities = 25/142 (17%), Positives = 45/142 (31%), Gaps = 16/142 (11%)
Query: 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCS 783
K+AG A +GR+ +A H + AL L + D
Sbjct: 14 EKTAGVHAAAAGRFEQASRHLSAALREW----------------RGPVLDDLRDFQFVEP 57
Query: 784 LAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISS 843
A AL E+ A + +A + ++L+ L + + + +
Sbjct: 58 FATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQ 117
Query: 844 RDLRQACRHLSSMEEDAKKGEP 865
D A R + + D +P
Sbjct: 118 SDALGAYRRVKTTLADDLGIDP 139
|
| >d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Hypothetical protein KIAA0730 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (94), Expect = 7e-05
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 867 DFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQEQEIR 909
+ ++ ++ KK R+ LK HPDK E
Sbjct: 17 EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEV 59
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (100), Expect = 9e-05
Identities = 36/291 (12%), Positives = 78/291 (26%), Gaps = 15/291 (5%)
Query: 497 NRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSA 556
R+ G + A+ A DP ++ + + A + L
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83
Query: 557 AAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSE 616
+ ++ E + + + L S
Sbjct: 84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143
Query: 617 KLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKS 676
L + L + + A++L ++ + VL + + L +
Sbjct: 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 203
Query: 677 YFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGR 736
+ ++ L + +++ + L+ + + G
Sbjct: 204 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC--------INLGA 255
Query: 737 YTEAVEHYTVALSTNIESR-------PFAAICFCNRAAALQALGQIADAIA 780
+ EAVEH+ AL+ +SR + + AL LGQ A
Sbjct: 256 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306
|
| >d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.0 bits (93), Expect = 1e-04
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 854 SSMEEDAKKGEPLDFYLILGVKASDTAADIKKAYRKAALKHHPDK 898
++E+ KK D+Y ILG S +D+K+ Y+K L +HPDK
Sbjct: 8 MALEQTLKK----DWYSILGADPSANMSDLKQKYQKLILLYHPDK 48
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.1 bits (92), Expect = 4e-04
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 12/111 (10%)
Query: 724 HKSAGNEAFKSGRYTEAVEHYTVA------------LSTNIESRPFAAICFCNRAAALQA 771
K+ GN FKS + A++ YT + + +P A C N A
Sbjct: 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK 89
Query: 772 LGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
+ A+ C A+ +D + TKA+ RRA + +++Y QA +DL++ I
Sbjct: 90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 39.7 bits (91), Expect = 4e-04
Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 19/133 (14%)
Query: 722 LHHKSAGNEAFKSGRYTEAVEHYTVALSTN--------IESRPFAAICFCNRAAALQALG 773
S +G Y EA + A+ + + F A C A AL L
Sbjct: 10 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR 69
Query: 774 QIADAIADCSLAMA-----------LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
+A+ A+ + + AV RA + + +A + +++V +
Sbjct: 70 SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129
Query: 823 LENQSAEKAKQSR 835
+E + E + R
Sbjct: 130 IEERKGETPGKER 142
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 0.002
Identities = 31/338 (9%), Positives = 81/338 (23%), Gaps = 69/338 (20%)
Query: 510 EALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL----NSAAAVCLDRRI 565
++ + A + + + A+ +++ Y K+L A +++ +
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDL 60
Query: 566 T-------IEAADGLQKAQKVTEYINCSGKLLE--QKTSEAASSALERINEALSISSCSE 616
I G K + L + S + L+ + ++
Sbjct: 61 WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR 120
Query: 617 KLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKS 676
++ + L L + R+R
Sbjct: 121 VKSSQLGIISNKQTHTSAIVKPQSSSC---SYICQHCL-------VHLGDIARYR----- 165
Query: 677 YFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGR 736
+ A + Q + G + A G
Sbjct: 166 ----NQTSQAESYYRHAAQ---LVPSNGQ-----------------PYNQLAILASSKGD 201
Query: 737 YTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAV 796
+ + +Y +++ PF AA L + + + + +
Sbjct: 202 HLTTIFYYCRSIAVKF---PF--------PAASTNLQKALSKALESRDEVKTKWGVSDFI 250
Query: 797 SRRAALHEMI---RDYTQAASDLQRLVSILENQSAEKA 831
H + + + + ++L + +KA
Sbjct: 251 KAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKA 288
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (83), Expect = 0.003
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 725 KSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSL 784
K GN+A G +A++ Y+ A+ + P + + NR+AA G A D
Sbjct: 7 KEKGNKALSVGNIDDALQCYSEAIKLD----PHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 785 AMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSI 822
+ L ++ K SR+AA E + + +A + +
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 100
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.4 bits (88), Expect = 0.003
Identities = 15/158 (9%), Positives = 35/158 (22%), Gaps = 8/158 (5%)
Query: 494 CYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLL 553
R + E L T + + + + L ++
Sbjct: 146 WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE 205
Query: 554 NSA--------AAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERI 605
N A D + C + + ++ + + +
Sbjct: 206 NVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKEL 265
Query: 606 NEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTL 643
E + + + AL L +E +Q
Sbjct: 266 QELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 303
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.4 bits (88), Expect = 0.003
Identities = 32/331 (9%), Positives = 81/331 (24%), Gaps = 36/331 (10%)
Query: 424 QNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSET 483
++ +A + +R T +++ R + +Q + + P T
Sbjct: 9 TSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDE----SVLELTSQILGANPDFAT 64
Query: 484 AGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIE 543
C + ++ + S ++ L V+P + L E
Sbjct: 65 LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124
Query: 544 NAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALE 603
+ +L A + D R A + L
Sbjct: 125 ----WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE---------------ELA 165
Query: 604 RINEALSISSCSEKLLEMKADALYMLRKYEEAIQL--CEHTLPVAEKNFASVLADNGSVT 661
+ ++ + + ++ L L ++ + + E
Sbjct: 166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND 225
Query: 662 YSL-ARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRA 720
S ++ F +LQ + S + E+ +
Sbjct: 226 QSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELE----SCKELQELEPEN------KWC 275
Query: 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTN 751
LL E +++++ + +
Sbjct: 276 LLTIILLMRALDPLLYEKETLQYFSTLKAVD 306
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 954 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.97 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.94 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.86 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.85 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.85 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.82 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.81 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.8 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.8 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.71 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.59 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.57 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.57 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.56 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.56 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.55 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.55 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.54 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.51 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.49 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.47 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.47 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.44 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.44 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.41 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.4 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.4 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.38 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.37 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.35 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.33 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.32 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.31 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.29 | |
| d1gh6a_ | 114 | Large T antigen, the N-terminal J domain {Simian v | 99.27 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.25 | |
| d1xbla_ | 75 | DnaJ chaperone, N-terminal (J) domain {Escherichia | 99.23 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.18 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.18 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.18 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.14 | |
| d1hdja_ | 77 | HSP40 {Human (Homo sapiens) [TaxId: 9606]} | 99.13 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.09 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.04 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.95 | |
| d1wjza_ | 94 | CSL-type zinc finger-containing protein 3 (J-domai | 98.94 | |
| d1fafa_ | 79 | Large T antigen, the N-terminal J domain {Murine p | 98.88 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.81 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.8 | |
| d1iura_ | 88 | Hypothetical protein KIAA0730 {Human (Homo sapiens | 98.67 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.55 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.5 | |
| d1fpoa1 | 76 | HSC20 (HSCB), N-terminal (J) domain {Escherichia c | 98.48 | |
| d1nz6a_ | 98 | Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} | 98.37 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.71 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.68 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.63 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.45 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.78 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.99 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 95.8 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 91.54 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 84.01 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-33 Score=310.00 Aligned_cols=334 Identities=15% Similarity=0.122 Sum_probs=288.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002199 452 RLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMR 531 (954)
Q Consensus 452 ~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~ 531 (954)
..+|..+++.|+|++|+.+|+++++.+|++. .++..+|.+|+.+|++++|+..|+++++++|+++.++..
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~----------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 72 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNT----------GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSN 72 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4689999999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHH---------------------------------------
Q 002199 532 AAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADG--------------------------------------- 572 (954)
Q Consensus 532 LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~--------------------------------------- 572 (954)
+|.+|..+|++++|+..+..++...|...............
T Consensus 73 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (388)
T d1w3ba_ 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLE 152 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHH
T ss_pred HHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 99999999999999999999999887543221111100000
Q ss_pred -----HHHH-----HhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHh
Q 002199 573 -----LQKA-----QKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHT 642 (954)
Q Consensus 573 -----l~~~-----~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~eka 642 (954)
.... .....+..++..+...+.++ +|+..+.+++.++|.++.++..+|.++...|++++|+..++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 229 (388)
T d1w3ba_ 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW---LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH---HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred hhHHHHHHhhccCcchhHHHHhhcccccccCcHH---HHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHh
Confidence 0000 00344555666777777777 7888899999999999999999999999999999999999999
Q ss_pred chhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHH
Q 002199 643 LPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALL 722 (954)
Q Consensus 643 L~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~ 722 (954)
+.+.|.... .+..+|.+|...|++++|+..|++++++.|.+..
T Consensus 230 ~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------------------- 272 (388)
T d1w3ba_ 230 LSLSPNHAV-----------------VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD-------------------- 272 (388)
T ss_dssp HHHCTTCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH--------------------
T ss_pred HHHhhhHHH-----------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--------------------
Confidence 988876643 6778999999999999999999999999987643
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAAL 802 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~l 802 (954)
.+..+|.++...|++.+|+..|+.++... |....++..+|.++..+|++++|+..|+++++++|+++.+++.+|.+
T Consensus 273 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 348 (388)
T d1w3ba_ 273 AYCNLANALKEKGSVAEAEDCYNTALRLC----PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhccC----CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 56678999999999999999999999998 78889999999999999999999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHh
Q 002199 803 HEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRH 852 (954)
Q Consensus 803 y~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~ 852 (954)
|..+|++++|+.+|+++++++ |++..++..|+.++..
T Consensus 349 ~~~~g~~~~A~~~~~~al~l~-------------P~~~~a~~~lg~~~~~ 385 (388)
T d1w3ba_ 349 LQQQGKLQEALMHYKEAIRIS-------------PTFADAYSNMGNTLKE 385 (388)
T ss_dssp HHTTTCCHHHHHHHHHHHTTC-------------TTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-------------CCCHHHHHHHHHHHHH
Confidence 999999999999999999994 5555556677776554
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.7e-29 Score=278.96 Aligned_cols=309 Identities=20% Similarity=0.197 Sum_probs=272.9
Q ss_pred hcccHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHH
Q 002199 423 VQNKFEAAEEVKQRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATR 502 (954)
Q Consensus 423 ~~~~~~~~e~~~~~~~~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y 502 (954)
.++..++...+.+. ....|....++..+|.+++..|+|++|+.+|+++++++|.+. .+|..+|.+|
T Consensus 12 ~G~~~~A~~~~~~~----l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----------~a~~~l~~~~ 77 (388)
T d1w3ba_ 12 AGDFEAAERHCMQL----WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA----------EAYSNLGNVY 77 (388)
T ss_dssp HTCHHHHHHHHHHH----HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH----HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHh
Confidence 34444444444442 234466788999999999999999999999999999999987 8999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCC-----------------------------------------------------------
Q 002199 503 ISLGRMREALEDCMMAATVDP----------------------------------------------------------- 523 (954)
Q Consensus 503 ~~lg~~eeAl~~~~kALel~P----------------------------------------------------------- 523 (954)
..+|++++|+..+..++..+|
T Consensus 78 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (388)
T d1w3ba_ 78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHH
Confidence 999999999999988776544
Q ss_pred ---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Q 002199 524 ---------NFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKT 594 (954)
Q Consensus 524 ---------~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~ 594 (954)
+...++..+|.++...|++++|+..++++++++|++ ...+..++..+...++
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-------------------~~~~~~l~~~~~~~~~ 218 (388)
T d1w3ba_ 158 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-------------------LDAYINLGNVLKEARI 218 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHTTTC
T ss_pred HHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCccc-------------------HHHHHHHhhhhhcccc
Confidence 445677778888888888889999888888888875 4557788889999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHH
Q 002199 595 SEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLIS 674 (954)
Q Consensus 595 ~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg 674 (954)
++ +|+..+.+++...|.....+..+|.++...|++++|+..|++++++.|.+.. ++..+|
T Consensus 219 ~~---~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~l~ 278 (388)
T d1w3ba_ 219 FD---RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD-----------------AYCNLA 278 (388)
T ss_dssp TT---HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH-----------------HHHHHH
T ss_pred HH---HHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHH
Confidence 99 7889999999999999999999999999999999999999999999998754 688899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC
Q 002199 675 KSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES 754 (954)
Q Consensus 675 ~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~ 754 (954)
.+|...|++++|+..|++++...|.... .+..+|.++...|++++|+.+|+++++++
T Consensus 279 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~--- 335 (388)
T d1w3ba_ 279 NALKEKGSVAEAEDCYNTALRLCPTHAD--------------------SLNNLANIKREQGNIEEAVRLYRKALEVF--- 335 (388)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHCTTCHH--------------------HHHHHHHHHHTTTCHHHHHHHHHHHTTSC---
T ss_pred HHHHHcCCHHHHHHHHHhhhccCCccch--------------------hhhHHHHHHHHCCCHHHHHHHHHHHHHhC---
Confidence 9999999999999999999999887643 45668999999999999999999999998
Q ss_pred chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 002199 755 RPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRD 808 (954)
Q Consensus 755 ~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~ 808 (954)
|..+.+++++|.+|..+|++++|+.+|+++++++|+++.+|..+|.+|..+||
T Consensus 336 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 336 -PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 77889999999999999999999999999999999999999999999999986
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=5e-25 Score=240.50 Aligned_cols=298 Identities=15% Similarity=0.055 Sum_probs=224.1
Q ss_pred HHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 470 FYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYY 549 (954)
Q Consensus 470 ~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~y 549 (954)
.|++++...+.++.. .....+.+|..++..|++++|+..|+++++.+|+++.+|+.+|.+|..+|++++|+..|
T Consensus 3 ~~~~~~~~~~~n~~~------~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~ 76 (323)
T d1fcha_ 3 TYDKGYQFEEENPLR------DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 76 (323)
T ss_dssp HHHCCCCCCSSCTTT------TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHhHhhcccCCCc------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 355555555554310 01335789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 002199 550 HKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYML 629 (954)
Q Consensus 550 ekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~l 629 (954)
.++++++| .+...+..+|.+|..+
T Consensus 77 ~~al~~~p--------------------------------------------------------~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 77 RRCLELKP--------------------------------------------------------DNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHCT--------------------------------------------------------TCHHHHHHHHHHHHHT
T ss_pred Hhhhcccc--------------------------------------------------------cccccccccccccccc
Confidence 98887655 4455666777777777
Q ss_pred cCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHH
Q 002199 630 RKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILE 709 (954)
Q Consensus 630 g~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~ 709 (954)
|++++|+..+++++...|............. ....+.........+...+.+.+|+..|.+++.++|....
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~------- 171 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGA--GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID------- 171 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTTGGGCC-----------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCC-------
T ss_pred ccccccccchhhHHHhccchHHHHHhhhhhh--hhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccc-------
Confidence 7777887777777777765533211110000 0000001112233445667789999999999999987654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 002199 710 SSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALD 789 (954)
Q Consensus 710 ~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ld 789 (954)
...+..+|.++...|++++|+.+|++++..+ |..+.+|+++|.+|..+|++++|+..|+++++++
T Consensus 172 -----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 236 (323)
T d1fcha_ 172 -----------PDVQCGLGVLFNLSGEYDKAVDCFTAALSVR----PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 236 (323)
T ss_dssp -----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -----------cccchhhHHHHHHHHHHhhhhcccccccccc----cccccchhhhhhcccccccchhHHHHHHHHHHHh
Confidence 2346678999999999999999999999998 7788999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhh
Q 002199 790 ENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSS 855 (954)
Q Consensus 790 P~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~ 855 (954)
|+++.+|+.+|.+|..+|++++|+..|+++|++.|++....... .......+..++.+...+++
T Consensus 237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~--~~~~~~~~~~l~~al~~~~~ 300 (323)
T d1fcha_ 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG--GAMSENIWSTLRLALSMLGQ 300 (323)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------C--CCCCHHHHHHHHHHHHHHTC
T ss_pred hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhh--HHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999876543221 23333344556666554443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1e-25 Score=246.02 Aligned_cols=263 Identities=13% Similarity=0.019 Sum_probs=209.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002199 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYM 530 (954)
Q Consensus 451 l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~ 530 (954)
++.+|..+++.|+|++|+.+|+++|+.+|++. .+|..+|.+|..+|++++|+..|.++++++|++..++.
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~----------~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 91 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM----------EAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALM 91 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccc
Confidence 56899999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHh
Q 002199 531 RAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALS 610 (954)
Q Consensus 531 ~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~ 610 (954)
.+|.+|..+|++++|+..|++++.+.|......... ......
T Consensus 92 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~--------------------- 133 (323)
T d1fcha_ 92 ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA-----------------EEGAGG--------------------- 133 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC----------------------------------------------
T ss_pred cccccccccccccccccchhhHHHhccchHHHHHhh-----------------hhhhhh---------------------
Confidence 999999999999999999999999988642111000 000000
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 611 ISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLL 690 (954)
Q Consensus 611 ~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l 690 (954)
............+...+.+.+|+..|.+++.++|.... .+++..+|.++...|++++|+..|
T Consensus 134 ---~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~ 195 (323)
T d1fcha_ 134 ---AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID---------------PDVQCGLGVLFNLSGEYDKAVDCF 195 (323)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCC---------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---cccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccc---------------cccchhhHHHHHHHHHHhhhhccc
Confidence 00001111122344556778888899998888876532 125678899999999999999999
Q ss_pred HHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHH
Q 002199 691 QKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQ 770 (954)
Q Consensus 691 ~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~ 770 (954)
++++...|.+.. .+..+|.++...|++++|+.+|+++++++ |..+.+|+++|.+|.
T Consensus 196 ~~al~~~p~~~~--------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~ 251 (323)
T d1fcha_ 196 TAALSVRPNDYL--------------------LWNKLGATLANGNQSEEAVAAYRRALELQ----PGYIRSRYNLGISCI 251 (323)
T ss_dssp HHHHHHCTTCHH--------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHH
T ss_pred cccccccccccc--------------------chhhhhhcccccccchhHHHHHHHHHHHh----hccHHHHHHHHHHHH
Confidence 999998887643 56778999999999999999999999998 778889999999999
Q ss_pred HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 771 ALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 771 ~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
.+|++++|+..|++||+++|++..++..++.++
T Consensus 252 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 284 (323)
T d1fcha_ 252 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 284 (323)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHH
Confidence 999999999999999999998877655544333
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=8.6e-20 Score=197.53 Aligned_cols=305 Identities=14% Similarity=0.066 Sum_probs=246.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..+..++....+|.+++..|++++|+.+|+++|...|.+. ....+.++..+|.+|..+|++++|+..|++++++.
T Consensus 7 ~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~-----~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 81 (366)
T d1hz4a_ 7 EDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGW-----FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 81 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC-----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCC-----cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3455677888899999999999999999999999999864 22345688999999999999999999999999875
Q ss_pred CC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChH
Q 002199 523 PN------FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSE 596 (954)
Q Consensus 523 P~------~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~ 596 (954)
+. ...++..++.++...|++..|+..+.+++.+.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~------------------------------------ 125 (366)
T d1hz4a_ 82 RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH------------------------------------ 125 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------------------------------
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcc------------------------------------
Confidence 43 256788899999999999999999999887644210
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHH
Q 002199 597 AASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKS 676 (954)
Q Consensus 597 ~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~ 676 (954)
....+....++..+|.++...|+++.|...+.+++...+..... .....+..++..
T Consensus 126 ------------~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 181 (366)
T d1hz4a_ 126 ------------LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ------------QQLQCLAMLIQC 181 (366)
T ss_dssp ------------CTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG------------GGHHHHHHHHHH
T ss_pred ------------cchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh------------hHHHHHHHHHHH
Confidence 00111223456778999999999999999999998887654221 112356778899
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCch
Q 002199 677 YFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRP 756 (954)
Q Consensus 677 y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p 756 (954)
+...+++..+...+.++..+........ ......+..++..+...+++++|+.++.+++.+.+...+
T Consensus 182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 248 (366)
T d1hz4a_ 182 SLARGDLDNARSQLNRLENLLGNGKYHS-------------DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH 248 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCH-------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccC-------------chHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch
Confidence 9999999999999999988655443311 112334566889999999999999999999999887777
Q ss_pred hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhh
Q 002199 757 FAAICFCNRAAALQALGQIADAIADCSLAMAL------DENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILEN 825 (954)
Q Consensus 757 ~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l------dP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~ 825 (954)
.....+.++|.++..+|++++|+..+++++.+ .|....++..+|.+|..+|++++|+..|++++++.+.
T Consensus 249 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 249 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 323 (366)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence 88889999999999999999999999999854 4566789999999999999999999999999999543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.85 E-value=3.9e-21 Score=211.58 Aligned_cols=275 Identities=9% Similarity=-0.036 Sum_probs=234.4
Q ss_pred HHcCC-HHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhcCCCcHH
Q 002199 459 YKNNN-LTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG----------RMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 459 ~~~g~-y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg----------~~eeAl~~~~kALel~P~~~~ 527 (954)
...+. .++|+.+|+++|+++|++. .+|..++.++..++ ++++|+..++++++.+|++..
T Consensus 39 ~~~~~~~~~al~~~~~~l~~~P~~~----------~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~ 108 (334)
T d1dcea1 39 RQAGELDESVLELTSQILGANPDFA----------TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG 108 (334)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HhcccccHHHHHHHHHHHHHCCCcH----------HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHH
Confidence 34444 5899999999999999997 78888887766554 489999999999999999999
Q ss_pred HHHHHHHHHHHcCC--HHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHhcChHHHHHHHHH
Q 002199 528 VYMRAAKCHLVLGE--IENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEY-INCSGKLLEQKTSEAASSALER 604 (954)
Q Consensus 528 a~~~LA~iy~~lG~--~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~-l~~a~~ll~~g~~~~a~eAL~~ 604 (954)
+|+.+|.++..+++ +++|+..+++++.++|.+ ...+ ...+..+...+.++ +|+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~-------------------~~~~~~~~~~~~~~~~~~~---~Al~~ 166 (334)
T d1dcea1 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERN-------------------FHCWDYRRFVAAQAAVAPA---EELAF 166 (334)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHTCCCHH---HHHHH
T ss_pred HHHHhhHHHHHhccccHHHHHHHHHHHHhhCchh-------------------hhhhhhHHHHHHHhccccH---HHHHH
Confidence 99999999998876 899999999999999975 2233 34455666678887 89999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHH
Q 002199 605 INEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLE 684 (954)
Q Consensus 605 l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~e 684 (954)
+++++.++|.+..++..+|.++..+|++++|+..+.+++.+.|.... +...+..++..+
T Consensus 167 ~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------------------~~~~~~~l~~~~ 225 (334)
T d1dcea1 167 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELE---------------------LVQNAFFTDPND 225 (334)
T ss_dssp HHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHH---------------------HHHHHHHHCSSC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHH---------------------HHHHHHHhcchh
Confidence 99999999999999999999999999999999999999998886532 334456678888
Q ss_pred HHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHH
Q 002199 685 VALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCN 764 (954)
Q Consensus 685 eAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~ 764 (954)
+|+..+.+++...|..... +..+|.++...+++.+|+..|.+++..+ |....++..
T Consensus 226 ~a~~~~~~~l~~~~~~~~~--------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~ 281 (334)
T d1dcea1 226 QSAWFYHRWLLGRAEPLFR--------------------CELSVEKSTVLQSELESCKELQELEPEN----KWCLLTIIL 281 (334)
T ss_dssp SHHHHHHHHHHSCCCCSSS--------------------CCCCHHHHHHHHHHHHHHHHHHHHCTTC----HHHHHHHHH
T ss_pred HHHHHHHHHHHhCcchhhH--------------------HHHHHHHHHHHhhHHHHHHHHHHHHhhC----chHHHHHHH
Confidence 9999999999998877652 2336778888899999999999999998 889999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 002199 765 RAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYT 810 (954)
Q Consensus 765 lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~e 810 (954)
+|.+|..+|++++|+.+|+++++++|.....|..++..+.....+.
T Consensus 282 l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e~~~~ 327 (334)
T d1dcea1 282 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVL 327 (334)
T ss_dssp HHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHhhHHH
Confidence 9999999999999999999999999999999999988877644333
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=6.3e-20 Score=201.16 Aligned_cols=209 Identities=11% Similarity=0.089 Sum_probs=192.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC
Q 002199 444 FQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGR-MREALEDCMMAATVD 522 (954)
Q Consensus 444 ~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~-~eeAl~~~~kALel~ 522 (954)
.|+.++++..+|.++.+.+.+++|+.+|++||+++|.+. .+|+++|.++..+|+ +++|+..++++++++
T Consensus 39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~----------~a~~~r~~~l~~l~~~~~eal~~~~~al~~~ 108 (315)
T d2h6fa1 39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY----------TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 108 (315)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCCh----------HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999997 999999999999875 999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHH
Q 002199 523 PNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSAL 602 (954)
Q Consensus 523 P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL 602 (954)
|++..+|..+|.++..+|++++|+..|.++++++|.+ ...+..++..+...++++ +|+
T Consensus 109 p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n-------------------~~a~~~~~~~~~~~~~~~---~Al 166 (315)
T d2h6fa1 109 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-------------------YHAWQHRQWVIQEFKLWD---NEL 166 (315)
T ss_dssp TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHHTCCT---THH
T ss_pred HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc-------------------hHHHHHHHHHHHHHHhhH---HHH
Confidence 9999999999999999999999999999999999987 567889999999999999 799
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccC------HHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHH
Q 002199 603 ERINEALSISSCSEKLLEMKADALYMLRK------YEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKS 676 (954)
Q Consensus 603 ~~l~kaL~~~P~~~~~~~~lA~~~~~lg~------~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~ 676 (954)
..+.++++++|.+..+|..+|.++..++. +++|+..+.+++.+.|.+.. +|..++.+
T Consensus 167 ~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~-----------------~~~~l~~l 229 (315)
T d2h6fa1 167 QYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES-----------------AWNYLKGI 229 (315)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH-----------------HHHHHHHH
T ss_pred HHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchH-----------------HHHHHHHH
Confidence 99999999999999999999999998876 68999999999999998854 67777877
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcc
Q 002199 677 YFCIGKLEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 677 y~~lG~~eeAl~~l~kal~l~p~~~~ 702 (954)
+... .+.++...+++++.+.|....
T Consensus 230 l~~~-~~~~~~~~~~~~~~l~~~~~~ 254 (315)
T d2h6fa1 230 LQDR-GLSKYPNLLNQLLDLQPSHSS 254 (315)
T ss_dssp HTTT-CGGGCHHHHHHHHHHTTTCCC
T ss_pred HHhc-ChHHHHHHHHHHHHhCCCcCC
Confidence 6544 468899999999999887654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2.1e-19 Score=196.89 Aligned_cols=218 Identities=9% Similarity=0.010 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhchhhhhhHHHHHHH
Q 002199 491 LVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGE-IENAQHYYHKLLNSAAAVCLDRRITIEA 569 (954)
Q Consensus 491 la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~-~eeAl~~yekaL~l~P~~~~~~~~~~ea 569 (954)
...++.++|.++.+.+.+++|++.+++||+++|.+..+|..+|.++..+|+ +++|+..|+++++++|.+
T Consensus 42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~---------- 111 (315)
T d2h6fa1 42 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN---------- 111 (315)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC----------
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhh----------
Confidence 368999999999999999999999999999999999999999999999875 999999999999999976
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 570 ADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 570 ~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
...+..++..+...|+++ +|+..+.+++.++|.+..+|..+|.++..++++++|+..|+++|+++|.+
T Consensus 112 ---------~~a~~~~~~~~~~l~~~~---eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n 179 (315)
T d2h6fa1 112 ---------YQVWHHRRVLVEWLRDPS---QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 179 (315)
T ss_dssp ---------HHHHHHHHHHHHHHTCCT---THHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred ---------hhHHHHHhHHHHhhccHH---HHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc
Confidence 566788888888888888 78888888888888888888888888888888888888888888888877
Q ss_pred hhhhhhccCcchhhHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHH
Q 002199 650 FASVLADNGSVTYSLARLWRWRLISKSYFCIGK------LEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLH 723 (954)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~------~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~ 723 (954)
.. +|..+|.++...+. +++|+..+.+++.+.|.+.. +
T Consensus 180 ~~-----------------a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~--------------------~ 222 (315)
T d2h6fa1 180 NS-----------------VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES--------------------A 222 (315)
T ss_dssp HH-----------------HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH--------------------H
T ss_pred HH-----------------HHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchH--------------------H
Confidence 54 67778888776665 46677777777777766533 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQ 770 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~ 770 (954)
+..++.++. .....+++..++.++.+.|.. ....++..++.+|.
T Consensus 223 ~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 223 WNYLKGILQ-DRGLSKYPNLLNQLLDLQPSH--SSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHT-TTCGGGCHHHHHHHHHHTTTC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcChHHHHHHHHHHHHhCCCc--CCHHHHHHHHHHHH
Confidence 444555433 333566667777776666432 23444455555543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.81 E-value=1.3e-20 Score=207.36 Aligned_cols=257 Identities=9% Similarity=-0.053 Sum_probs=217.8
Q ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhchhhhhhHHHHHHHHHHH
Q 002199 504 SLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGE----------IENAQHYYHKLLNSAAAVCLDRRITIEAADGL 573 (954)
Q Consensus 504 ~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~----------~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l 573 (954)
..+..++|+..++++|+++|++..+|..++.++..++. +++|+.+|+++++.+|.+
T Consensus 41 ~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~-------------- 106 (334)
T d1dcea1 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS-------------- 106 (334)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC--------------
T ss_pred cccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCc--------------
Confidence 33445899999999999999999999888877766544 789999999999999976
Q ss_pred HHHHhHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHccCHHHHHHHHHHhchhhhhhh
Q 002199 574 QKAQKVTEYINCSGKLLEQKT--SEAASSALERINEALSISSCSEKLL-EMKADALYMLRKYEEAIQLCEHTLPVAEKNF 650 (954)
Q Consensus 574 ~~~~~~~~~l~~a~~ll~~g~--~~~a~eAL~~l~kaL~~~P~~~~~~-~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~ 650 (954)
...+..++..+...+. ++ +|+..+.+++.++|.....+ ..+|.++...+.+++|+..+++++.++|.+.
T Consensus 107 -----~~~~~~~~~~~~~~~~~~~~---~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~ 178 (334)
T d1dcea1 107 -----YGTWHHRCWLLSRLPEPNWA---RELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 178 (334)
T ss_dssp -----HHHHHHHHHHHHTCSSCCHH---HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH
T ss_pred -----HHHHHHhhHHHHHhccccHH---HHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCH
Confidence 4456666666665554 55 89999999999999988775 5678899999999999999999999999885
Q ss_pred hhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 651 ASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNE 730 (954)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~ 730 (954)
. +|+.+|.++..+|++++|+..+++++.+.|.. ......
T Consensus 179 ~-----------------a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------------~~~~~~ 217 (334)
T d1dcea1 179 S-----------------SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE------------------------LELVQN 217 (334)
T ss_dssp H-----------------HHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH------------------------HHHHHH
T ss_pred H-----------------HHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH------------------------HHHHHH
Confidence 5 78899999999999999988887776653311 123344
Q ss_pred HHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 002199 731 AFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYT 810 (954)
Q Consensus 731 ~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~e 810 (954)
+...+.+.+|+..|.+++... |.....+..++.++...+++.+|+..+.+++..+|.+..+++.+|.+|..+|+++
T Consensus 218 ~~~l~~~~~a~~~~~~~l~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 293 (334)
T d1dcea1 218 AFFTDPNDQSAWFYHRWLLGR----AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEK 293 (334)
T ss_dssp HHHHCSSCSHHHHHHHHHHSC----CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHH
T ss_pred HHHhcchhHHHHHHHHHHHhC----cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHH
Confidence 566788889999999999988 5666677888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhH
Q 002199 811 QAASDLQRLVSILENQS 827 (954)
Q Consensus 811 eAi~~~ekAL~l~p~~~ 827 (954)
+|+.+|+++++++|...
T Consensus 294 eA~~~~~~ai~ldP~~~ 310 (334)
T d1dcea1 294 ETLQYFSTLKAVDPMRA 310 (334)
T ss_dssp HHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHCcccH
Confidence 99999999999976543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=3.3e-18 Score=179.62 Aligned_cols=232 Identities=15% Similarity=-0.000 Sum_probs=164.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 002199 462 NNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGE 541 (954)
Q Consensus 462 g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~ 541 (954)
.+++.|+..+++++...+... ...+.+|+++|.+|..+|++++|+..|+++|+++|+++.+|+.+|.+|..+|+
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~------~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~ 86 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTD------DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 86 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhhcCC------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHH
Confidence 356678888888887654332 23568999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 002199 542 IENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEM 621 (954)
Q Consensus 542 ~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~ 621 (954)
+++|+..|+++++++|. ++.++..
T Consensus 87 ~~~A~~~~~~al~~~p~--------------------------------------------------------~~~a~~~ 110 (259)
T d1xnfa_ 87 FDAAYEAFDSVLELDPT--------------------------------------------------------YNYAHLN 110 (259)
T ss_dssp HHHHHHHHHHHHHHCTT--------------------------------------------------------CTHHHHH
T ss_pred HHHhhhhhhHHHHHHhh--------------------------------------------------------hhhhHHH
Confidence 99999999998887664 3445666
Q ss_pred HHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Q 002199 622 KADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISD 701 (954)
Q Consensus 622 lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~ 701 (954)
+|.+|..+|++++|+..|++++++.|.+.. .+..++.++...+..+.+...........+...
T Consensus 111 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (259)
T d1xnfa_ 111 RGIALYYGGRDKLAQDDLLAFYQDDPNDPF-----------------RSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW 173 (259)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------------HHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhccccHH-----------------HHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh
Confidence 777777777777777777777777775532 233445555555555555554444444433332
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHH
Q 002199 702 RYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIAD 781 (954)
Q Consensus 702 ~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~ 781 (954)
... .....++. ....+.+..+...+..++... |....+|+++|.+|..+|++++|+.+
T Consensus 174 ~~~-----------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~ 231 (259)
T d1xnfa_ 174 GWN-----------------IVEFYLGN-ISEQTLMERLKADATDNTSLA----EHLSETNFYLGKYYLSLGDLDSATAL 231 (259)
T ss_dssp HHH-----------------HHHHHTTS-SCHHHHHHHHHHHCCSHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhh-----------------HHHHHHHH-HHHHHHHHHHHHHHHHhhhcC----cccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 100 00000010 011223445555555555555 67778899999999999999999999
Q ss_pred HHHHHHhCCCCHH
Q 002199 782 CSLAMALDENYTK 794 (954)
Q Consensus 782 ~ekAL~ldP~~~~ 794 (954)
|++||..+|.+..
T Consensus 232 ~~~al~~~p~~~~ 244 (259)
T d1xnfa_ 232 FKLAVANNVHNFV 244 (259)
T ss_dssp HHHHHTTCCTTCH
T ss_pred HHHHHHcCCCCHH
Confidence 9999999997643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1.9e-18 Score=181.47 Aligned_cols=212 Identities=11% Similarity=-0.037 Sum_probs=156.1
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 440 PTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAA 519 (954)
Q Consensus 440 ~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kAL 519 (954)
.....+..+..|+.+|..|+..|+|++|+..|+++|.++|+++ .+|+++|.+|..+|++++|+..|++++
T Consensus 29 ~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~----------~a~~~lg~~~~~~g~~~~A~~~~~~al 98 (259)
T d1xnfa_ 29 RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP----------EVFNYLGIYLTQAGNFDAAYEAFDSVL 98 (259)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH----------HHHhhhchHHHHHHHHHHhhhhhhHHH
Confidence 3345678899999999999999999999999999999999997 899999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHH
Q 002199 520 TVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAAS 599 (954)
Q Consensus 520 el~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~ 599 (954)
+++|+++.+++.+|.+|..+|++++|+..|+++++++|.+... .+..+......+...
T Consensus 99 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------------------~~~~~~~~~~~~~~~--- 156 (259)
T d1xnfa_ 99 ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR-------------------SLWLYLAEQKLDEKQ--- 156 (259)
T ss_dssp HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------------------HHHHHHHHHHHCHHH---
T ss_pred HHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHH-------------------HHHHHHHHHHhhhHH---
Confidence 9999999999999999999999999999999999999875211 111222222222222
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHH----HccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALY----MLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISK 675 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~----~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~ 675 (954)
.+...........+..... .+...+. ..+.++.+...+...+...|... .+|+.+|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~lg~ 217 (259)
T d1xnfa_ 157 AKEVLKQHFEKSDKEQWGW--NIVEFYLGNISEQTLMERLKADATDNTSLAEHLS-----------------ETNFYLGK 217 (259)
T ss_dssp HHHHHHHHHHHSCCCSTHH--HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHH-----------------HHHHHHHH
T ss_pred HHHHHHHHhhccchhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccH-----------------HHHHHHHH
Confidence 1122222222333332211 1111111 22334445555554444444332 26788999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcc
Q 002199 676 SYFCIGKLEVALDLLQKLEQVGSISDR 702 (954)
Q Consensus 676 ~y~~lG~~eeAl~~l~kal~l~p~~~~ 702 (954)
+|..+|++++|+.+|++++..+|.+..
T Consensus 218 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 244 (259)
T d1xnfa_ 218 YYLSLGDLDSATALFKLAVANNVHNFV 244 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence 999999999999999999999997643
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=1.3e-15 Score=164.13 Aligned_cols=287 Identities=12% Similarity=-0.031 Sum_probs=223.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHH
Q 002199 492 VLCYSNRAATRISLGRMREALEDCMMAATVDPNF-----LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRIT 566 (954)
Q Consensus 492 a~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~-----~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~ 566 (954)
+.++..+|.+++..|++++|+..|+++|++.|.+ ..++..+|.+|..+|++++|+..|++++.+.+...
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~------ 85 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD------ 85 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc------
Confidence 5778889999999999999999999999999976 45888999999999999999999999988755321
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhh
Q 002199 567 IEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVA 646 (954)
Q Consensus 567 ~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~ 646 (954)
.. +.....+..++.++...|++..|+..+.+++.+.
T Consensus 86 ---------------------------~~-----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~ 121 (366)
T d1hz4a_ 86 ---------------------------VW-----------------HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 121 (366)
T ss_dssp ---------------------------CH-----------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------------------------ch-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 0112345677889999999999999999999887
Q ss_pred hhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 002199 647 EKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKS 726 (954)
Q Consensus 647 p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 726 (954)
+.... .......+.+..+|.++...|+++.|...+.+++...+...... .+..+..
T Consensus 122 ~~~~~---------~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------------~~~~~~~ 177 (366)
T d1hz4a_ 122 NEQHL---------EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ---------------QLQCLAM 177 (366)
T ss_dssp HHTTC---------TTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG---------------GHHHHHH
T ss_pred Hhccc---------chhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh---------------HHHHHHH
Confidence 65422 11112233567889999999999999999999998877654422 1234556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhccC---CchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHH
Q 002199 727 AGNEAFKSGRYTEAVEHYTVALSTNIE---SRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY----TKAVSRR 799 (954)
Q Consensus 727 lG~~~~~~g~~eeAi~~y~kAL~l~~~---~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~----~~al~~l 799 (954)
.+..+...+.+.+++..+.+++.+... ..+....++..++.++...+++++|+..+++++.+.|.+ ...+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 788899999999999999999887432 235567788899999999999999999999999887654 5667889
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhhhh
Q 002199 800 AALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSMEED 859 (954)
Q Consensus 800 A~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e~a 859 (954)
|.++..+|++++|+..+++++.+..... ..|.....+..++.++..++..+.+
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A 310 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLR-------LMSDLNRNLLLLNQLYWQAGRKSDA 310 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcc-------cChHHHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999998854321 1233344455666666666555544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2.8e-14 Score=139.18 Aligned_cols=110 Identities=23% Similarity=0.349 Sum_probs=104.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 441 TAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAAT 520 (954)
Q Consensus 441 ~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALe 520 (954)
+....+.++.+..+|+.+++.|+|++|+.+|+++|+++|.+. .+|.++|.+|+.+|++++|+.+|+++|+
T Consensus 3 ~~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~----------~~~~~lg~~~~~~~~~~~A~~~~~kal~ 72 (159)
T d1a17a_ 3 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA----------IYYGNRSLAYLRTECYGYALGDATRAIE 72 (159)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhh----------hhhhhhHHHHHhccccchHHHHHHHHHH
Confidence 344557889999999999999999999999999999999997 9999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 521 VDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 521 l~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
++|++..+|+.+|.++..+|++++|+..|++++.++|.+.
T Consensus 73 ~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~ 112 (159)
T d1a17a_ 73 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 112 (159)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 9999999999999999999999999999999999999763
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=9.4e-15 Score=135.33 Aligned_cols=104 Identities=27% Similarity=0.367 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~ 526 (954)
.+..++..|+.++..|+|++|+.+|+++|+.+|.++ .+|.++|.+|..+|++++|+..|.++++++|+++
T Consensus 2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~----------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 71 (117)
T d1elwa_ 2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH----------VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG 71 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch----------hhhhcccccccccccccccchhhhhHHHhccchh
Confidence 456688999999999999999999999999999997 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
.+|+.+|.++..+|++++|+..|+++++++|++.
T Consensus 72 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~ 105 (117)
T d1elwa_ 72 KGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP 105 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999999999999863
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.57 E-value=2.8e-14 Score=143.36 Aligned_cols=103 Identities=22% Similarity=0.357 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~ 527 (954)
++.+..+|+.+++.|+|++|+..|++||.++|.++ .+|.++|.||+.+|+|++|+.+|++||+++|+++.
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~----------~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~ 73 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA----------VYYTNRALCYLKMQQPEQALADCRRALELDGQSVK 73 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------HHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHH
Confidence 56789999999999999999999999999999997 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
+|+++|.+|..+|++++|+..|++++.++|...
T Consensus 74 a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~ 106 (201)
T d2c2la1 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 999999999999999999999999999999654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=2.8e-14 Score=153.38 Aligned_cols=230 Identities=13% Similarity=-0.010 Sum_probs=168.8
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
..++.++.|...|+.|...++|++|+.+|.+|+++..... .....+.+|.++|.||..+|++++|++.|++++++.
T Consensus 32 ~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~----~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~ 107 (290)
T d1qqea_ 32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG----NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF 107 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHh
Confidence 4567788999999999999999999999999999864432 112346899999999999999999999999999986
Q ss_pred CCc------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCh
Q 002199 523 PNF------LKVYMRAAKCHLV-LGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTS 595 (954)
Q Consensus 523 P~~------~~a~~~LA~iy~~-lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~ 595 (954)
+.. ..++..+|.+|.. +|++++|+..|++++++.+.. +..
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~---------------------------------~~~ 154 (290)
T d1qqea_ 108 THRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD---------------------------------QSV 154 (290)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---------------------------------TCH
T ss_pred hhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc---------------------------------Cch
Confidence 544 6778889988865 699999999999998864421 000
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHH
Q 002199 596 EAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISK 675 (954)
Q Consensus 596 ~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~ 675 (954)
+....++..+|.++..+|+|++|+..|++++...+...... ....+.+..++.
T Consensus 155 -----------------~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 207 (290)
T d1qqea_ 155 -----------------ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ----------WSLKDYFLKKGL 207 (290)
T ss_dssp -----------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG----------GGHHHHHHHHHH
T ss_pred -----------------hhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhh----------hhHHHHHHHHHH
Confidence 01133577889999999999999999999999877653211 111235667889
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhc
Q 002199 676 SYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFK--SGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 676 ~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~--~g~~eeAi~~y~kAL~l~ 751 (954)
++...+++..|...++++++++|...... ....+..+...+.. .+.+.+|+..|+++.+++
T Consensus 208 ~~l~~~d~~~A~~~~~~~~~~~~~~~~sr---------------e~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 208 CQLAATDAVAAARTLQEGQSEDPNFADSR---------------ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHHHTTCHHHHHHHHHGGGCC------------------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCccchH---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999887654311 01111223333322 456889999998877776
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.56 E-value=4.4e-14 Score=151.76 Aligned_cols=229 Identities=10% Similarity=0.040 Sum_probs=168.4
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 002199 507 RMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCS 586 (954)
Q Consensus 507 ~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a 586 (954)
+|++|++.|.+ .|.+|..+++|++|+.+|.+++++....
T Consensus 32 ~~~~Aa~~y~~--------------aa~~y~~~~~~~~A~~~y~kA~~~~~~~--------------------------- 70 (290)
T d1qqea_ 32 KFEEAADLCVQ--------------AATIYRLRKELNLAGDSFLKAADYQKKA--------------------------- 70 (290)
T ss_dssp HHHHHHHHHHH--------------HHHHHHHTTCTHHHHHHHHHHHHHHHHT---------------------------
T ss_pred cHHHHHHHHHH--------------HHHHHHHCcCHHHHHHHHHHHHHHHHHc---------------------------
Confidence 46777766655 4889999999999999999998863311
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHH
Q 002199 587 GKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLAR 666 (954)
Q Consensus 587 ~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~ 666 (954)
++.. .....+..+|.+|..+|++++|+..|++++.+.+..... ...
T Consensus 71 ------~~~~-----------------~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~-----------~~~ 116 (290)
T d1qqea_ 71 ------GNED-----------------EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF-----------RRG 116 (290)
T ss_dssp ------TCHH-----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----------HHH
T ss_pred ------CCCH-----------------HHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc-----------hhH
Confidence 1111 113467778999999999999999999999998765321 111
Q ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002199 667 LWRWRLISKSYFC-IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYT 745 (954)
Q Consensus 667 l~a~~~Lg~~y~~-lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~ 745 (954)
..++..+|.+|.. .|++++|+.+|++++.+.+.... .......+..+|.++...|+|++|+.+|+
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~--------------~~~~~~~~~~la~~~~~~g~y~~A~~~~~ 182 (290)
T d1qqea_ 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS--------------VALSNKCFIKCADLKALDGQYIEASDIYS 182 (290)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc--------------hhhhhhHHHHHHHHHHHcChHHHHHHHHH
Confidence 2257788888865 69999999999999886443322 12234567789999999999999999999
Q ss_pred HHHhhccCCc---hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHH--hcCHHHHHHH
Q 002199 746 VALSTNIESR---PFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKA-----VSRRAALHEM--IRDYTQAASD 815 (954)
Q Consensus 746 kAL~l~~~~~---p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~a-----l~~lA~ly~~--lg~~eeAi~~ 815 (954)
+++...+... ......+..++.++...+++..|...++++++++|..... +..+..++.. .+.+++|+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~ 262 (290)
T d1qqea_ 183 KLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKE 262 (290)
T ss_dssp HHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHH
T ss_pred HHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999875432 3445678889999999999999999999999999876543 3444445444 3569999999
Q ss_pred HHHHHHHhh
Q 002199 816 LQRLVSILE 824 (954)
Q Consensus 816 ~ekAL~l~p 824 (954)
|.++++++|
T Consensus 263 y~~~~~lD~ 271 (290)
T d1qqea_ 263 FDNFMRLDK 271 (290)
T ss_dssp HTTSSCCCH
T ss_pred HHHHhhcCH
Confidence 988887754
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=4e-15 Score=150.46 Aligned_cols=149 Identities=12% Similarity=-0.021 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~ 527 (954)
+-.++.+|..++..|+|++|++.|.++ .|.++ .+|+++|.+|+.+|++++|+.+|++||+++|+++.
T Consensus 5 ~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~----------~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~ 71 (192)
T d1hh8a_ 5 AISLWNEGVLAADKKDWKGALDAFSAV---QDPHS----------RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV 71 (192)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCH----------HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhh
Confidence 345667899999999999999999863 44454 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINE 607 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~k 607 (954)
+|+++|.+|..+|++++|+..|++++...+.+.... +. ..
T Consensus 72 a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~-------------------------------~~---------~~ 111 (192)
T d1hh8a_ 72 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID-------------------------------YK---------IL 111 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEE-------------------------------CG---------GG
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHH-------------------------------HH---------Hh
Confidence 999999999999999999999999998766431100 00 00
Q ss_pred HHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhh
Q 002199 608 ALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKN 649 (954)
Q Consensus 608 aL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~ 649 (954)
.+........+++.+|.++..+|++++|++.+.+++.+.|..
T Consensus 112 ~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 112 GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp TBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred hhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 011112234677888999999999999999999998887753
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.3e-15 Score=174.85 Aligned_cols=228 Identities=10% Similarity=-0.001 Sum_probs=155.2
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002199 510 EALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKL 589 (954)
Q Consensus 510 eAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~l 589 (954)
+|+++|++|+++.|+.+.+++.+|.++..++++++| |+++|.++|....... +...+
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~--------------~e~~L------ 60 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKK--------------VEQDL------ 60 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHT--------------HHHHH------
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHh--------------HHHHH------
Confidence 799999999999999999999999999999999987 8999999986432211 00000
Q ss_pred HHhcChHHHHHHHHHHHHHHhcC--CCC-HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHH
Q 002199 590 LEQKTSEAASSALERINEALSIS--SCS-EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLAR 666 (954)
Q Consensus 590 l~~g~~~~a~eAL~~l~kaL~~~--P~~-~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~ 666 (954)
-...|. .+++.+++.+... +.. ......++.++...+.|+.|+..+.+++.+.|.+..
T Consensus 61 -w~~~y~---~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~--------------- 121 (497)
T d1ya0a1 61 -WNHAFK---NQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV--------------- 121 (497)
T ss_dssp -HHHHTH---HHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------
T ss_pred -HHHHHH---HHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHH---------------
Confidence 011122 4556666666543 222 223334566677788899999999999988887644
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002199 667 LWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTV 746 (954)
Q Consensus 667 l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~k 746 (954)
.+..+|.++...|++++|+..+++++..++ ...+..+|.++...++|++|+.+|.+
T Consensus 122 --~~~~lg~~~~~~~~~~~A~~~~~~al~~~~----------------------~~~~~~LG~l~~~~~~~~~A~~~y~~ 177 (497)
T d1ya0a1 122 --KSSQLGIISNKQTHTSAIVKPQSSSCSYIC----------------------QHCLVHLGDIARYRNQTSQAESYYRH 177 (497)
T ss_dssp -----------------------CCHHHHHHH----------------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHhHHHHHhCCCHHHHHHHHHHHhCCCH----------------------HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 677899999999999999999998876432 13566789999999999999999999
Q ss_pred HHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 002199 747 ALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIR 807 (954)
Q Consensus 747 AL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg 807 (954)
|+.++ |.++.+|++||.++...|++.+|+.+|.+||.++|.++.|+.+|+.++.+..
T Consensus 178 A~~l~----P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 178 AAQLV----PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHC----TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHC----CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 99999 8889999999999999999999999999999999999999999998887654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.55 E-value=3.9e-14 Score=137.56 Aligned_cols=126 Identities=16% Similarity=0.105 Sum_probs=109.3
Q ss_pred hcCCCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCC------chHHHHHHHHHHHHHHcCCHH
Q 002199 436 RTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCI------KPLVLCYSNRAATRISLGRMR 509 (954)
Q Consensus 436 ~~~~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~------~~la~~~~~lA~~y~~lg~~e 509 (954)
.|.+...+..+.+..+...|+.+|+.|+|.+|+..|++||...+......... ...+.+|.|+|.||+.+|+++
T Consensus 5 ~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~ 84 (153)
T d2fbna1 5 IYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYP 84 (153)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccc
Confidence 45556667778899999999999999999999999999999887654211100 013568899999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhh
Q 002199 510 EALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCL 561 (954)
Q Consensus 510 eAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~ 561 (954)
+|+.+|+++|+++|.+..+|+++|.+|..+|++++|+.+|+++++++|++..
T Consensus 85 ~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~ 136 (153)
T d2fbna1 85 KAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136 (153)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred hhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999999999999999999999998743
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=3.7e-14 Score=131.25 Aligned_cols=103 Identities=24% Similarity=0.376 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002199 722 LHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAA 801 (954)
Q Consensus 722 ~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ 801 (954)
..+...|+.++..|+|++|+.+|+++|.++ |.++.+|+++|.+|..+|++++|+..|.+++.++|+++.+|+.+|.
T Consensus 4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~ 79 (117)
T d1elwa_ 4 NELKEKGNKALSVGNIDDALQCYSEAIKLD----PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 79 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHH
Confidence 345678999999999999999999999999 8889999999999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 802 LHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 802 ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
++..+|++++|+.+|+++++++|++..
T Consensus 80 ~~~~~~~~~~A~~~~~~a~~~~p~~~~ 106 (117)
T d1elwa_ 80 ALEFLNRFEEAKRTYEEGLKHEANNPQ 106 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999655443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=8.4e-14 Score=137.66 Aligned_cols=126 Identities=18% Similarity=0.154 Sum_probs=110.5
Q ss_pred cCCCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccC-----CchHHHHHHHHHHHHHHcCCHHHH
Q 002199 437 TVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCC-----IKPLVLCYSNRAATRISLGRMREA 511 (954)
Q Consensus 437 ~~~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~-----~~~la~~~~~lA~~y~~lg~~eeA 511 (954)
|.+.+....+.+..+...|+.+|..|+|++|+.+|++||...|........ ......+|.++|.||+++|+|++|
T Consensus 2 ~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A 81 (170)
T d1p5qa1 2 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAA 81 (170)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccc
Confidence 566777778889999999999999999999999999999999876521110 011467888999999999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhh
Q 002199 512 LEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLD 562 (954)
Q Consensus 512 l~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~ 562 (954)
+.+++++|.++|+++.+++++|.||..+|++++|+..|+++++++|++...
T Consensus 82 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~ 132 (170)
T d1p5qa1 82 IESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132 (170)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred cchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999999999999999999999999999987433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.5e-15 Score=173.26 Aligned_cols=233 Identities=7% Similarity=-0.108 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 002199 465 TEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIEN 544 (954)
Q Consensus 465 ~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~ee 544 (954)
-+|+++|++|+++.|+.. .+++++|.+|..++++++| |+++|.++|+...++...+.+. ...|..
T Consensus 3 ~eA~q~~~qA~~l~p~~a----------~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~ 67 (497)
T d1ya0a1 3 LQSAQYLRQAEVLKADMT----------DSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKN 67 (497)
T ss_dssp HHHHHHHHHHHHHHGGGT----------CSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHH
T ss_pred HHHHHHHHHHHHcCCCCH----------HHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHH
Confidence 379999999999999987 7899999999999999987 8999999998877654433332 223677
Q ss_pred HHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002199 545 AQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKAD 624 (954)
Q Consensus 545 Al~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~ 624 (954)
+++.+++.++......... .... .........+.|. .++..+.+++.++|.+...+..+|.
T Consensus 68 ~ie~~r~~~k~~~~~~~~~---------------~~~~-~~~~l~~a~~~Y~---~ai~~l~~~~~l~~~~~~~~~~lg~ 128 (497)
T d1ya0a1 68 QITTLQGQAKNRANPNRSE---------------VQAN-LSLFLEAASGFYT---QLLQELCTVFNVDLPCRVKSSQLGI 128 (497)
T ss_dssp HHHHHHHHHSCSSCTTTTH---------------HHHH-HHHHHHHHHHHHH---HHHHHHTC-----------------
T ss_pred HHHHHHHhcccccCccHHH---------------HHHH-HHHHHHHHHHHHH---HHHHHHHHHHCCChhhHHHHHHhHH
Confidence 8888888776543221110 0000 0111122234455 7888888889999999999999999
Q ss_pred HHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchh
Q 002199 625 ALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYG 704 (954)
Q Consensus 625 ~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~ 704 (954)
++...+++++|+..+.+++...+.. .+..+|.++...+++++|+.+|++++.+.|.+..
T Consensus 129 ~~~~~~~~~~A~~~~~~al~~~~~~-------------------~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~-- 187 (497)
T d1ya0a1 129 ISNKQTHTSAIVKPQSSSCSYICQH-------------------CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ-- 187 (497)
T ss_dssp --------------CCHHHHHHHHH-------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH--
T ss_pred HHHhCCCHHHHHHHHHHHhCCCHHH-------------------HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchH--
Confidence 9999999999999999999887643 6778999999999999999999999999998865
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcC
Q 002199 705 SEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQ 774 (954)
Q Consensus 705 ~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~ 774 (954)
.+.++|.++...|++.+|+.+|.+||.+. +..+.++.+|+.++.+..+
T Consensus 188 ------------------~~~~Lg~~~~~~~~~~~A~~~y~ral~~~----~~~~~a~~nL~~~~~~~~~ 235 (497)
T d1ya0a1 188 ------------------PYNQLAILASSKGDHLTTIFYYCRSIAVK----FPFPAASTNLQKALSKALE 235 (497)
T ss_dssp ------------------HHHHHHHHHHHTTCHHHHHHHHHHHHSSS----BCCHHHHHHHHHHHHHHTT
T ss_pred ------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHhhh
Confidence 67889999999999999999999999998 6688999999988876543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.51 E-value=1.2e-13 Score=136.21 Aligned_cols=127 Identities=18% Similarity=0.161 Sum_probs=110.5
Q ss_pred hhcCCCChhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccC-----CchHHHHHHHHHHHHHHcCCHH
Q 002199 435 QRTVSPTAAFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCC-----IKPLVLCYSNRAATRISLGRMR 509 (954)
Q Consensus 435 ~~~~~~~~~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~-----~~~la~~~~~lA~~y~~lg~~e 509 (954)
+.|.+...+..+.++.+..+|+.+++.|+|.+|+.+|++||...|........ ....+.+|.++|.||+.+|+|+
T Consensus 2 e~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~ 81 (168)
T d1kt1a1 2 ESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 81 (168)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcc
Confidence 34666777778899999999999999999999999999999987765421000 0114678899999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhh
Q 002199 510 EALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCL 561 (954)
Q Consensus 510 eAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~ 561 (954)
+|+.+++++|.++|.+..+++++|.+|..+|+|++|+..|++++.++|++..
T Consensus 82 ~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~ 133 (168)
T d1kt1a1 82 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 133 (168)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH
T ss_pred cchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999999999999999999999998743
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.7e-13 Score=132.03 Aligned_cols=106 Identities=27% Similarity=0.402 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSR 798 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~ 798 (954)
..+..+...|+.+++.|+|++|+.+|++++.++ |.++.+|+++|.+|..+|++++|+.+|+++|+++|+++.+|+.
T Consensus 8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~ 83 (159)
T d1a17a_ 8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN----PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 83 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccc----hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHH
Confidence 445567779999999999999999999999999 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhhhHH
Q 002199 799 RAALHEMIRDYTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 799 lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~ 828 (954)
+|.++..+|++++|+.+|++++.+.|++..
T Consensus 84 ~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~ 113 (159)
T d1a17a_ 84 RAASNMALGKFRAALRDYETVVKVKPHDKD 113 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 999999999999999999999999665543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.47 E-value=1.3e-13 Score=138.38 Aligned_cols=101 Identities=32% Similarity=0.445 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002199 722 LHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAA 801 (954)
Q Consensus 722 ~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ 801 (954)
..+...|+.++..|+|++|+.+|++||.++ |.++.+|+++|.+|..+|++++|+.+|++||.++|+++.+|+.+|.
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~----p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN----PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 456778999999999999999999999999 7889999999999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 802 LHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 802 ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
+|..+|++++|+.+|++++++.|+.
T Consensus 81 ~~~~l~~~~~A~~~~~~al~l~p~~ 105 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYSLAKEQ 105 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999998864
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.47 E-value=6.4e-13 Score=128.84 Aligned_cols=125 Identities=22% Similarity=0.251 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCc------------hhhHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 002199 717 TVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESR------------PFAAICFCNRAAALQALGQIADAIADCSL 784 (954)
Q Consensus 717 ~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~------------p~~a~~~~~lA~~y~~lg~~eeAi~~~ek 784 (954)
.+..+..+...|+.++..|+|.+|+..|++||.+.+... +....++.|+|.||+++|++++|+.+|++
T Consensus 13 ~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~ 92 (153)
T d2fbna1 13 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK 92 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhc
Confidence 345566778899999999999999999999998754221 22356889999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhh
Q 002199 785 AMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLS 854 (954)
Q Consensus 785 AL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~ 854 (954)
+|+++|.+..+|+.+|.+|..+|++++|+.+|+++++++|+ +..+...+..+..++.
T Consensus 93 al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-------------n~~~~~~l~~~~~kl~ 149 (153)
T d2fbna1 93 VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-------------NLDIRNSYELCVNKLK 149 (153)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-------------CHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-------------CHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999554 4445566666665553
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.2e-12 Score=129.27 Aligned_cols=126 Identities=23% Similarity=0.329 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCc-----------hhhHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002199 717 TVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESR-----------PFAAICFCNRAAALQALGQIADAIADCSLA 785 (954)
Q Consensus 717 ~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~-----------p~~a~~~~~lA~~y~~lg~~eeAi~~~ekA 785 (954)
.+..+..+...|+.++..|+|++|+..|++||.+.+... +....+|.++|.||+++|+|++|+.+++++
T Consensus 9 k~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~a 88 (170)
T d1p5qa1 9 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 88 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhh
Confidence 334566778899999999999999999999999865321 345677889999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhh
Q 002199 786 MALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSS 855 (954)
Q Consensus 786 L~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~ 855 (954)
|.++|+++.+++.+|.+|..+|++++|+.+|+++++++| ++..+...+..++..+..
T Consensus 89 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P-------------~n~~~~~~l~~~~~~~~~ 145 (170)
T d1p5qa1 89 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-------------NNKAAKTQLAVCQQRIRR 145 (170)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-------------SCHHHHHHHHHHHHHHHH
T ss_pred hhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC-------------CCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999955 444455666666655443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1e-12 Score=132.45 Aligned_cols=130 Identities=14% Similarity=0.032 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002199 669 RWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVAL 748 (954)
Q Consensus 669 a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL 748 (954)
.++..|..+...|++++|+..|.++ .+.+. ..++++|.+|+..|++++|+.+|++||
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~--------------------~~~~nlG~~~~~~g~~~~A~~~~~kAl 63 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSAV---QDPHS--------------------RICFNIGCMYTILKNMTEAEKAFTRSI 63 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS---SSCCH--------------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhc---CCCCH--------------------HHHHHHHHHHHHcCCchhHHHHHHHHH
Confidence 4556799999999999999999864 33221 257789999999999999999999999
Q ss_pred hhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHhcCHHHH
Q 002199 749 STNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY----------------TKAVSRRAALHEMIRDYTQA 812 (954)
Q Consensus 749 ~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~----------------~~al~~lA~ly~~lg~~eeA 812 (954)
+++ |..+.+|+++|.+|..+|++++|+.+|++|+...+.+ .++++++|.++..+|++++|
T Consensus 64 ~ld----p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A 139 (192)
T d1hh8a_ 64 NRD----KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA 139 (192)
T ss_dssp HHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHh----hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHH
Confidence 999 8899999999999999999999999999999875542 47889999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 002199 813 ASDLQRLVSILEN 825 (954)
Q Consensus 813 i~~~ekAL~l~p~ 825 (954)
++.|++++++.|+
T Consensus 140 ~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 140 EEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHTTCCS
T ss_pred HHHHHHHHhcCCC
Confidence 9999999999654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.41 E-value=4.8e-11 Score=128.61 Aligned_cols=90 Identities=11% Similarity=-0.006 Sum_probs=64.2
Q ss_pred cCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCH
Q 002199 734 SGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENY----TKAVSRRAALHEMIRDY 809 (954)
Q Consensus 734 ~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~----~~al~~lA~ly~~lg~~ 809 (954)
.++.+.|...|++++... |.+..+|...+..+...|+++.|...|++++...|.. ...|..........|+.
T Consensus 182 ~~~~~~a~~i~e~~l~~~----p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~ 257 (308)
T d2onda1 182 SKDKSVAFKIFELGLKKY----GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp SCCHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred ccCHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCH
Confidence 466677777777777766 5666777777777777777777777888777766543 33555666666677888
Q ss_pred HHHHHHHHHHHHHhhhhH
Q 002199 810 TQAASDLQRLVSILENQS 827 (954)
Q Consensus 810 eeAi~~~ekAL~l~p~~~ 827 (954)
+.+...++++.+++|...
T Consensus 258 ~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 258 ASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHCcccc
Confidence 888888888888887664
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.40 E-value=2.6e-12 Score=126.40 Aligned_cols=109 Identities=23% Similarity=0.355 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC-----------chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIES-----------RPFAAICFCNRAAALQALGQIADAIADCSLAMA 787 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~-----------~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ 787 (954)
..+..+...|+.++..|+|.+|+..|++||.+.+.. .+....+|.++|.||..+|++++|+.+|+++|.
T Consensus 13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~ 92 (168)
T d1kt1a1 13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 92 (168)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence 445677789999999999999999999999764321 134567889999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhH
Q 002199 788 LDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQS 827 (954)
Q Consensus 788 ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~ 827 (954)
++|.++.+++.+|.+|..+|+|++|+.+|+++++++|++.
T Consensus 93 l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~ 132 (168)
T d1kt1a1 93 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 132 (168)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999999999999999955543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.40 E-value=2.9e-12 Score=125.94 Aligned_cols=124 Identities=26% Similarity=0.354 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc------------CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 002199 721 LLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI------------ESRPFAAICFCNRAAALQALGQIADAIADCSLAMAL 788 (954)
Q Consensus 721 ~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~------------~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~l 788 (954)
+..+...|..++..|+|.+|+..|+++|.+.+ ...|....++.++|.+|..+|+|++|+..|++||++
T Consensus 27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~ 106 (169)
T d1ihga1 27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 106 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence 34456789999999999999999999987532 123678889999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHhhcCCCCcchhhhhhHHHHHhhhhhh
Q 002199 789 DENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQSAEKAKQSRSPGRTISSRDLRQACRHLSSME 857 (954)
Q Consensus 789 dP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~~~~~~~~~~~P~~~~~~~~L~~a~~~L~~~e 857 (954)
+|+++.+|+.+|.+|..+|++++|+.+|+++++++|++ ..+...|..++..+....
T Consensus 107 ~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n-------------~~~~~~l~~~~~~l~~~~ 162 (169)
T d1ihga1 107 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-------------KAIQAELLKVKQKIKAQK 162 (169)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999995554 444566777766554443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=1.8e-12 Score=121.64 Aligned_cols=102 Identities=24% Similarity=0.291 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-
Q 002199 447 TCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNF- 525 (954)
Q Consensus 447 ~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~- 525 (954)
.+..+..+|+.++..|+|++|+.+|+++|+++|.+. .+|.++|.+|..+|+|++|+.+|+++|+++|.+
T Consensus 3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~----------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~ 72 (128)
T d1elra_ 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM----------TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR 72 (128)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH----------HHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH
Confidence 577889999999999999999999999999999987 899999999999999999999999999999866
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchh
Q 002199 526 ------LKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAA 558 (954)
Q Consensus 526 ------~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~ 558 (954)
..+|..+|.++..++++++|+.+|++++..++.
T Consensus 73 ~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 111 (128)
T d1elra_ 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (128)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 357888899999999999999999999988764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.38 E-value=2.7e-11 Score=130.69 Aligned_cols=226 Identities=8% Similarity=-0.036 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhh-chhhhhhHHHHHHHHHHH
Q 002199 509 REALEDCMMAATVDPNFLKVYMRAAKCHLVL--------------GEIENAQHYYHKLLNS-AAAVCLDRRITIEAADGL 573 (954)
Q Consensus 509 eeAl~~~~kALel~P~~~~a~~~LA~iy~~l--------------G~~eeAl~~yekaL~l-~P~~~~~~~~~~ea~~~l 573 (954)
..++..|++||...|.++..|+..+..+... +.+++|...|++++.. .|..
T Consensus 33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~-------------- 98 (308)
T d2onda1 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN-------------- 98 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC--------------
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCC--------------
Confidence 4566789999999999999998877655432 2346666677777653 3322
Q ss_pred HHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhh
Q 002199 574 QKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCS-EKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFAS 652 (954)
Q Consensus 574 ~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~-~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~ 652 (954)
...++..+......++++ .|...|.+++...|.+ ..++..++..+...++++.|+.+|+++++..|....
T Consensus 99 -----~~l~~~ya~~~~~~~~~~---~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~- 169 (308)
T d2onda1 99 -----MLLYFAYADYEESRMKYE---KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH- 169 (308)
T ss_dssp -----HHHHHHHHHHHHHTTCHH---HHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH-
T ss_pred -----HHHHHHHHHHHHhcccHH---HHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH-
Confidence 122444455555666666 5666677777766654 345666677777777777777777777776665532
Q ss_pred hhhccCcchhhHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 653 VLADNGSVTYSLARLWRWRLISKSY-FCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEA 731 (954)
Q Consensus 653 ~~~~~~~~~~~~~~l~a~~~Lg~~y-~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~ 731 (954)
.|...+... ...|+.+.|..+|++++...|.+.. .+...+..+
T Consensus 170 ----------------~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~--------------------~w~~y~~~~ 213 (308)
T d2onda1 170 ----------------VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE--------------------YVLAYIDYL 213 (308)
T ss_dssp ----------------HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHH--------------------HHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHH--------------------HHHHHHHHH
Confidence 333444443 3346777777777777776665533 344456666
Q ss_pred HHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Q 002199 732 FKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYT 793 (954)
Q Consensus 732 ~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~ 793 (954)
...|+++.|..+|++|+...|.++.....+|..........|+.+.+...++++.++.|...
T Consensus 214 ~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 214 SHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 77777777777777777766444334445555555556666777777777777777766653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.37 E-value=3.2e-12 Score=125.68 Aligned_cols=116 Identities=23% Similarity=0.209 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCccccc------CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002199 445 QETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGC------CIKPLVLCYSNRAATRISLGRMREALEDCMMA 518 (954)
Q Consensus 445 ~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~------~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kA 518 (954)
...++.+...|+.++..|+|.+|+..|+++|+..+....... .....+.+|.++|.||+.+|+|++|+..|++|
T Consensus 24 ~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a 103 (169)
T d1ihga1 24 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 103 (169)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhh
Confidence 445566788999999999999999999999986543211000 01124678999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 519 ATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 519 Lel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
|+++|+++.+|+++|.+|..+|++++|+..|+++++++|.+.
T Consensus 104 l~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~ 145 (169)
T d1ihga1 104 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 145 (169)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999999999999999999874
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.35 E-value=2.2e-12 Score=118.13 Aligned_cols=93 Identities=19% Similarity=0.059 Sum_probs=90.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Q 002199 451 WRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYM 530 (954)
Q Consensus 451 l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~ 530 (954)
++.+|..+++.|++.+|+.+|+++|..+|.+. .+|..+|.++..+|++++|+.+|+++++++|++..+++
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 88 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPERE----------EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA 88 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccc----------hhhhhhhhhhhhhhhHHHhhcccccccccccccccchH
Confidence 57889999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 002199 531 RAAKCHLVLGEIENAQHYYHKLL 553 (954)
Q Consensus 531 ~LA~iy~~lG~~eeAl~~yekaL 553 (954)
.+|.+|..+|++++|++.|+++|
T Consensus 89 ~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 89 ALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHh
Confidence 99999999999999999999976
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.33 E-value=6.2e-10 Score=116.44 Aligned_cols=222 Identities=12% Similarity=0.035 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhchhhhhhHHHHHH
Q 002199 493 LCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLV----LGEIENAQHYYHKLLNSAAAVCLDRRITIE 568 (954)
Q Consensus 493 ~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~----lG~~eeAl~~yekaL~l~P~~~~~~~~~~e 568 (954)
.+++++|..+...+++.+|++.|+++.+. .+..+++.||.+|.. ..++..|..+++.+....
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~------------ 68 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------------ 68 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc------------
Confidence 68889999999999999999999999775 578889999999887 567788887777766532
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHhch
Q 002199 569 AADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSCSEKLLEMKADALYM----LRKYEEAIQLCEHTLP 644 (954)
Q Consensus 569 a~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~~lA~~~~~----lg~~eeAi~~~ekaL~ 644 (954)
.+.+...+|.++.. ..+.+.|+..+++++.
T Consensus 69 ----------------------------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~ 102 (265)
T d1ouva_ 69 ----------------------------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD 102 (265)
T ss_dssp ----------------------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ----------------------------------------------ccchhhccccccccccccchhhHHHHHHHhhhhh
Confidence 22222333333332 2355566666666555
Q ss_pred hhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHH
Q 002199 645 VAEKNFASVLADNGSVTYSLARLWRWRLISKSYFC----IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRA 720 (954)
Q Consensus 645 l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~----lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~ 720 (954)
..+.. +...++..+.. ......|+..+.+......
T Consensus 103 ~g~~~-------------------a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---------------------- 141 (265)
T d1ouva_ 103 LKYAE-------------------GCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND---------------------- 141 (265)
T ss_dssp TTCHH-------------------HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC----------------------
T ss_pred hhhhh-------------------HHHhhcccccCCCcccchhHHHHHHhhhhhcccc----------------------
Confidence 44322 23334444442 3445566666655544211
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCC
Q 002199 721 LLHHKSAGNEAFK----SGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA----LGQIADAIADCSLAMALDENY 792 (954)
Q Consensus 721 ~~~~~~lG~~~~~----~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~----lg~~eeAi~~~ekAL~ldP~~ 792 (954)
...+..+|..+.. ..+...++.+++.+.+. .++.+++++|.+|.. ..++++|+.+|+++.+. .+
T Consensus 142 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~------g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~ 213 (265)
T d1ouva_ 142 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL------KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--EN 213 (265)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TC
T ss_pred cchhhhhhhhhccCCCcccccccchhhhhccccc------cccccccchhhhcccCcccccchhhhhhhHhhhhcc--cC
Confidence 1234456666664 56777888888888764 367888999999887 66899999999999887 47
Q ss_pred HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHh
Q 002199 793 TKAVSRRAALHEM----IRDYTQAASDLQRLVSIL 823 (954)
Q Consensus 793 ~~al~~lA~ly~~----lg~~eeAi~~~ekAL~l~ 823 (954)
+.+++.||.+|.. ..++++|+.+|+++..+-
T Consensus 214 ~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 214 GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 8999999999986 458999999999998883
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=8.8e-12 Score=116.80 Aligned_cols=101 Identities=22% Similarity=0.269 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH------
Q 002199 720 ALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYT------ 793 (954)
Q Consensus 720 ~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~------ 793 (954)
.+..+.++|+.++..|+|++|+.+|+++|.++ |.++.++.++|.+|..+|+|++|+.+|+++|+++|.+.
T Consensus 3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~ 78 (128)
T d1elra_ 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELD----PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (128)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHH
Confidence 35567889999999999999999999999999 77889999999999999999999999999999998764
Q ss_pred -HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 794 -KAVSRRAALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 794 -~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
.+|+.+|.++..++++++|+.+|++++.+.+
T Consensus 79 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 110 (128)
T d1elra_ 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 4677788888899999999999999998743
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.31 E-value=6.5e-12 Score=114.87 Aligned_cols=93 Identities=15% Similarity=0.066 Sum_probs=89.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002199 724 HKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALH 803 (954)
Q Consensus 724 ~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly 803 (954)
+..+|..+++.|++.+|+..|++++.++ |.++.+|+.+|.++..++++++|+.+|+++++++|+++.+++.+|.+|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y 94 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKE----PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 94 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccc----cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHH
Confidence 4568999999999999999999999999 788999999999999999999999999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHH
Q 002199 804 EMIRDYTQAASDLQRLV 820 (954)
Q Consensus 804 ~~lg~~eeAi~~~ekAL 820 (954)
..+|++++|++.|+++|
T Consensus 95 ~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 95 TNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 99999999999999986
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.29 E-value=9.7e-10 Score=114.90 Aligned_cols=229 Identities=15% Similarity=0.139 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRIS----LGRMREALEDCMMAATVDP 523 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~----lg~~eeAl~~~~kALel~P 523 (954)
+++++.+|..++.+++|.+|+.+|++|.+.. +. .+++++|.+|.. ..++..|+..++++....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--~~----------~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~- 68 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK--EN----------SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN- 68 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CH----------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CH----------HHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-
Confidence 5689999999999999999999999998763 43 899999999998 779999999999988654
Q ss_pred CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHH
Q 002199 524 NFLKVYMRAAKCHLV----LGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAAS 599 (954)
Q Consensus 524 ~~~~a~~~LA~iy~~----lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~ 599 (954)
++.+...+|.++.. ..+.+.|+..|+++....+.. ....++..+.....
T Consensus 69 -~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~---------------------a~~~l~~~~~~~~~----- 121 (265)
T d1ouva_ 69 -YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAE---------------------GCASLGGIYHDGKV----- 121 (265)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH---------------------HHHHHHHHHHHCSS-----
T ss_pred -ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhh---------------------HHHhhcccccCCCc-----
Confidence 67888889988876 467888988888887764421 11222222221100
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHH
Q 002199 600 SALERINEALSISSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFC 679 (954)
Q Consensus 600 eAL~~l~kaL~~~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~ 679 (954)
.......|+..+.......... .++.||.+|..
T Consensus 122 ----------------------------~~~~~~~a~~~~~~~~~~~~~~-------------------~~~~L~~~~~~ 154 (265)
T d1ouva_ 122 ----------------------------VTRDFKKAVEYFTKACDLNDGD-------------------GCTILGSLYDA 154 (265)
T ss_dssp ----------------------------SCCCHHHHHHHHHHHHHTTCHH-------------------HHHHHHHHHHH
T ss_pred ----------------------------ccchhHHHHHHhhhhhcccccc-------------------hhhhhhhhhcc
Confidence 0112223333333322221111 23344444443
Q ss_pred ----cCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhc
Q 002199 680 ----IGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFK----SGRYTEAVEHYTVALSTN 751 (954)
Q Consensus 680 ----lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~----~g~~eeAi~~y~kAL~l~ 751 (954)
..+...+..+++.+.+.. ...++.++|.+|.. ..++++|+.+|.++.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~a~~~g----------------------~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g 212 (265)
T d1ouva_ 155 GRGTPKDLKKALASYDKACDLK----------------------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 212 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCcccccccchhhhhcccccc----------------------ccccccchhhhcccCcccccchhhhhhhHhhhhccc
Confidence 233445555555544321 12345556766665 567888888888887764
Q ss_pred cCCchhhHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCC
Q 002199 752 IESRPFAAICFCNRAAALQA----LGQIADAIADCSLAMALDEN 791 (954)
Q Consensus 752 ~~~~p~~a~~~~~lA~~y~~----lg~~eeAi~~~ekAL~ldP~ 791 (954)
++.++++||.+|.. ..++.+|+.+|++|..+...
T Consensus 213 ------~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 213 ------NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp ------CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred ------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 45677788888875 33788888888888777543
|
| >d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Large T antigen, the N-terminal J domain species: Simian virus 40, Sv40 [TaxId: 10633]
Probab=99.27 E-value=2.9e-13 Score=124.21 Aligned_cols=66 Identities=21% Similarity=0.308 Sum_probs=60.9
Q ss_pred CcchhhhhccccCC--CHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASD--TAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a--~~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
..+||+||||++++ +..+||+|||+||++|||||+.....+.+|.+||++|++ +..|+.||.+|..
T Consensus 7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~e~F~~I~~AY~vLsd-~~kR~~YD~~~~~ 74 (114)
T d1gh6a_ 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMED-GVKYAHQPDFGGF 74 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHH-HHHSCCSSCCSCC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhCC-HHHHHHHhccCCC
Confidence 46799999999999 677999999999999999999999999999999999986 8899999998755
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1e-11 Score=115.41 Aligned_cols=101 Identities=14% Similarity=0.008 Sum_probs=90.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCc--H
Q 002199 452 RLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLG---RMREALEDCMMAATVDPNF--L 526 (954)
Q Consensus 452 ~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg---~~eeAl~~~~kALel~P~~--~ 526 (954)
-.+++.++..++|++|++.|+++|.++|.+. .+++++|.+++..+ ++.+|+..|++++..+|.. .
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~----------~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~ 72 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSK----------STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQR 72 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCH----------HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCH----------HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHH
Confidence 3577888999999999999999999999997 99999999998754 5567999999999999865 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhh
Q 002199 527 KVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLD 562 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~ 562 (954)
.+++.+|.+|..+|+|++|+.+|+++|+++|++...
T Consensus 73 ~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A 108 (122)
T d1nzna_ 73 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 108 (122)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHH
Confidence 589999999999999999999999999999987433
|
| >d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: DnaJ chaperone, N-terminal (J) domain species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=3e-12 Score=108.04 Aligned_cols=65 Identities=34% Similarity=0.547 Sum_probs=57.6
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----hHHHHHHHHHHHCCCCCcccccccccCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----DQEQEIRKATKESPQNSHYGRSSDAYGY 930 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----~~~e~~~~~~~~l~~~~~~r~~yD~~g~ 930 (954)
..|||.+|||.++++..+|++|||+++++||||++... ..+..+.+++++|++ |..|+.||.+|.
T Consensus 2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d-~~~R~~YD~~g~ 70 (75)
T d1xbla_ 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTD-SQKRAAYDQYGH 70 (75)
T ss_dssp CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTS-SHHHHHHHHHTT
T ss_pred CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCC-HHHHHHHHHhCc
Confidence 46899999999999999999999999999999998653 235678889999986 999999999993
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.18 E-value=9.2e-11 Score=113.48 Aligned_cols=114 Identities=12% Similarity=0.034 Sum_probs=94.1
Q ss_pred HHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCC--chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 002199 447 TCEMW--RLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCI--KPLVLCYSNRAATRISLGRMREALEDCMMAATVD 522 (954)
Q Consensus 447 ~ae~l--~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~--~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~ 522 (954)
.+.++ ...|+.++..|+|++|+..|+++|++.|..+...... ...+.+|.++|.+|..+|+|++|+.+++++|.+.
T Consensus 6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~ 85 (156)
T d2hr2a1 6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 85 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence 34444 4558999999999999999999999999875321111 1246889999999999999999999999999875
Q ss_pred CC-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhh
Q 002199 523 PN-----------FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVC 560 (954)
Q Consensus 523 P~-----------~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~ 560 (954)
|. ...+++++|.+|..+|++++|+..|++++++.|...
T Consensus 86 ~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 86 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred cccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 42 355789999999999999999999999999988653
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=3.2e-11 Score=112.08 Aligned_cols=100 Identities=11% Similarity=0.026 Sum_probs=88.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHhCCCC--HHHHHHHH
Q 002199 726 SAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA---LGQIADAIADCSLAMALDENY--TKAVSRRA 800 (954)
Q Consensus 726 ~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~---lg~~eeAi~~~ekAL~ldP~~--~~al~~lA 800 (954)
++++.+...+++++|.+.|++++.++ |.++.+++++|.++.. .+++.+|+..|++++..+|.. ..+++.+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~----p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG----SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS----CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 46778889999999999999999999 8899999999999986 456778999999999998765 56899999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhhhHHH
Q 002199 801 ALHEMIRDYTQAASDLQRLVSILENQSAE 829 (954)
Q Consensus 801 ~ly~~lg~~eeAi~~~ekAL~l~p~~~~~ 829 (954)
.+|..+|++++|+.+|+++|+++|++.++
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A 108 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQA 108 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHH
Confidence 99999999999999999999996665543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.18 E-value=8e-11 Score=113.92 Aligned_cols=104 Identities=21% Similarity=0.310 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCc--------hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIESR--------PFAAICFCNRAAALQALGQIADAIADCSLAMALDEN--- 791 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~--------p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~--- 791 (954)
.+...|..++..|+|++|+..|++||.+.+..+ +..+.+|.++|.+|..+|++++|+..++++|.+.|.
T Consensus 11 ~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~ 90 (156)
T d2hr2a1 11 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 90 (156)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccc
Confidence 344558899999999999999999999986542 235789999999999999999999999999987532
Q ss_pred --------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhhh
Q 002199 792 --------YTKAVSRRAALHEMIRDYTQAASDLQRLVSILENQ 826 (954)
Q Consensus 792 --------~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p~~ 826 (954)
...+++++|.+|..+|++++|+.+|++++++.|+.
T Consensus 91 ~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 91 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 35578999999999999999999999999998764
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.14 E-value=4.6e-11 Score=114.43 Aligned_cols=75 Identities=12% Similarity=0.031 Sum_probs=67.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCcH
Q 002199 457 QAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISL----------GRMREALEDCMMAATVDPNFL 526 (954)
Q Consensus 457 ~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~l----------g~~eeAl~~~~kALel~P~~~ 526 (954)
.+-+.+.|++|+..|+++|+++|++. .+|+++|.++..+ +.+++|+..|++||+++|+++
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~P~~~----------~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~ 75 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSNPLDA----------DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD 75 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHccHHHHHHHHHHHHhhCCcch----------HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhh
Confidence 35567789999999999999999997 9999999999855 556899999999999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 002199 527 KVYMRAAKCHLVLGE 541 (954)
Q Consensus 527 ~a~~~LA~iy~~lG~ 541 (954)
.+|+.+|.+|..+|+
T Consensus 76 ~a~~~lG~~y~~~g~ 90 (145)
T d1zu2a1 76 EAVWCIGNAYTSFAF 90 (145)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHccc
Confidence 999999999988764
|
| >d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSP40 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=1.7e-11 Score=103.88 Aligned_cols=66 Identities=33% Similarity=0.492 Sum_probs=58.6
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChhH---HHHHHHHHHHCCCCCcccccccccCCC
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYDQ---EQEIRKATKESPQNSHYGRSSDAYGYA 931 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~~---~e~~~~~~~~l~~~~~~r~~yD~~g~~ 931 (954)
.+|||++|||+++++..+|+++|+++++++|||+...+.. ...+.+|+++|++ |..|+.||.+|..
T Consensus 2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsd-p~~R~~YD~~g~~ 70 (77)
T d1hdja_ 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSD-PRKREIFDRYGEE 70 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTC-HHHHHHHHHTCGG
T ss_pred CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcC-HHHHHHHHhhhhh
Confidence 3689999999999999999999999999999999877654 4567788999996 9999999999843
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.09 E-value=1.7e-10 Score=110.43 Aligned_cols=95 Identities=17% Similarity=0.111 Sum_probs=83.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002199 730 EAFKSGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQAL----------GQIADAIADCSLAMALDENYTKAVSRR 799 (954)
Q Consensus 730 ~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~l----------g~~eeAi~~~ekAL~ldP~~~~al~~l 799 (954)
.+.+.+.|++|+..|++|+.++ |.++.+++++|.++..+ +.+++|+..|++||+++|+++.+|+++
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~----P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~l 81 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSN----PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI 81 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhC----CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhH
Confidence 3456678999999999999999 89999999999999854 556899999999999999999999999
Q ss_pred HHHHHHhcC-----------HHHHHHHHHHHHHHhhhhHH
Q 002199 800 AALHEMIRD-----------YTQAASDLQRLVSILENQSA 828 (954)
Q Consensus 800 A~ly~~lg~-----------~eeAi~~~ekAL~l~p~~~~ 828 (954)
|.+|..+|+ |++|+.+|++++++.|++..
T Consensus 82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~ 121 (145)
T d1zu2a1 82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 121 (145)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHH
Confidence 999988764 78999999999999655443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=4.9e-10 Score=98.92 Aligned_cols=89 Identities=15% Similarity=0.092 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Q 002199 448 CEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLK 527 (954)
Q Consensus 448 ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~ 527 (954)
++.++.+|..+++.|+|.+|+..|++|+++.|.+.. .....+.+|.++|.+|..+|++++|+..|+++|+++|++..
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~---~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~ 81 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEI---STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQR 81 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhc---cCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHH
Confidence 466889999999999999999999999999877641 12346789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc
Q 002199 528 VYMRAAKCHLVL 539 (954)
Q Consensus 528 a~~~LA~iy~~l 539 (954)
++.+++.+...+
T Consensus 82 a~~Nl~~~~~~l 93 (95)
T d1tjca_ 82 ANGNLKYFEYIM 93 (95)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999998776554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=2.4e-09 Score=94.36 Aligned_cols=85 Identities=14% Similarity=0.070 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC---chhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002199 723 HHKSAGNEAFKSGRYTEAVEHYTVALSTNIES---RPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRR 799 (954)
Q Consensus 723 ~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~---~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~l 799 (954)
..+.+|.++++.|+|.+|+.+|++|+.+.+.. .+..+.++.++|.++.++|++++|+.+|+++|+++|+++.++.++
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 45679999999999999999999999986532 345688999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 002199 800 AALHEMIR 807 (954)
Q Consensus 800 A~ly~~lg 807 (954)
+.+...++
T Consensus 87 ~~~~~~l~ 94 (95)
T d1tjca_ 87 KYFEYIMA 94 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 87766543
|
| >d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.94 E-value=1.9e-10 Score=101.02 Aligned_cols=65 Identities=32% Similarity=0.372 Sum_probs=55.6
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCCh----------hHHHHHHHHHHHCCCCCcccccccccC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEY----------DQEQEIRKATKESPQNSHYGRSSDAYG 929 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~----------~~~e~~~~~~~~l~~~~~~r~~yD~~g 929 (954)
...|||.+|||.++++..+|+++|++++++|||||+... .....|.+++++|++ +..|+.||..+
T Consensus 14 ~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d-~~~R~~YD~~~ 88 (94)
T d1wjza_ 14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN-EETKKKYDLQR 88 (94)
T ss_dssp SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSS-SSHHHHHHHHS
T ss_pred hccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHcc
Confidence 357999999999999999999999999999999997543 123567789999986 99999999654
|
| >d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Large T antigen, the N-terminal J domain species: Murine polyomavirus [TaxId: 10634]
Probab=98.88 E-value=2.7e-10 Score=96.14 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=58.4
Q ss_pred CcchhhhhccccCC--CHHHHHHHHHHHHHhhCCCCCCChhHHHHHHHHHHHCCCCCcccccccccC
Q 002199 865 PLDFYLILGVKASD--TAADIKKAYRKAALKHHPDKRSEYDQEQEIRKATKESPQNSHYGRSSDAYG 929 (954)
Q Consensus 865 ~~dyYkiLgv~~~a--~~~eIkkAYrklAl~~HPDK~~~~~~~e~~~~~~~~l~~~~~~r~~yD~~g 929 (954)
..+||++|||++++ +..+|++|||+++++||||++...+.+.+|.+||++|.+ +..|..||..|
T Consensus 10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~~e~~~~in~Ay~~L~d-~~~r~~~~~~~ 75 (79)
T d1fafa_ 10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKT-EVYNLRMNLGG 75 (79)
T ss_dssp HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHH-HHHHHTTCCSS
T ss_pred HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHCC-HHHHHHHccCC
Confidence 35689999999988 889999999999999999999999999999999999986 77899999766
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.81 E-value=7e-08 Score=95.16 Aligned_cols=106 Identities=18% Similarity=0.155 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCc------------------hhhHHHHHHHHHHHHHhcCHHHHHH
Q 002199 719 RALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESR------------------PFAAICFCNRAAALQALGQIADAIA 780 (954)
Q Consensus 719 ~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~------------------p~~a~~~~~lA~~y~~lg~~eeAi~ 780 (954)
.....+...|..+...|++++|+..|.+|+.+.+... +....++.+++.++..+|++++|+.
T Consensus 9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~ 88 (179)
T d2ff4a2 9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 88 (179)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence 3456777899999999999999999999999865331 3345788999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002199 781 DCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVSILE 824 (954)
Q Consensus 781 ~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~l~p 824 (954)
++++++.++|.+..+|..++.+|..+|++.+|+..|+++...+.
T Consensus 89 ~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~ 132 (179)
T d2ff4a2 89 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLA 132 (179)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988743
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.80 E-value=6.9e-08 Score=95.20 Aligned_cols=112 Identities=11% Similarity=0.046 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCc------------hHHHHHHHHHHHHHHcCCHHH
Q 002199 443 AFQETCEMWRLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIK------------PLVLCYSNRAATRISLGRMRE 510 (954)
Q Consensus 443 ~~~~~ae~l~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~------------~la~~~~~lA~~y~~lg~~ee 510 (954)
.+....+.+...|..+...|++++|+..|.+||.+.+.....+.... ....++.+++.++..+|++++
T Consensus 6 ~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~ 85 (179)
T d2ff4a2 6 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 85 (179)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH
Confidence 34567889999999999999999999999999999887642211111 145788999999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002199 511 ALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLN 554 (954)
Q Consensus 511 Al~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~ 554 (954)
|+.+++++++++|.+..+|..++.+|..+|++.+|+..|+++..
T Consensus 86 Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 86 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999855
|
| >d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Hypothetical protein KIAA0730 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=8e-09 Score=88.88 Aligned_cols=62 Identities=18% Similarity=0.124 Sum_probs=50.7
Q ss_pred CCcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh-----HHHHHHHHHHHCCCCCcccccccccC
Q 002199 864 EPLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD-----QEQEIRKATKESPQNSHYGRSSDAYG 929 (954)
Q Consensus 864 ~~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~-----~~e~~~~~~~~l~~~~~~r~~yD~~g 929 (954)
...++|++|+|..+++..|||+|||+++++||||+++... .+..|.++|+.|. .+..||.++
T Consensus 14 ~~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~----~~~~~d~~~ 80 (88)
T d1iura_ 14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE----KQAFLDQNA 80 (88)
T ss_dssp CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHH----HHTTCSSSS
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHH----HHHHhhccc
Confidence 3468999999999999999999999999999999987542 3456777888884 457777655
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.55 E-value=4.7e-08 Score=102.60 Aligned_cols=132 Identities=11% Similarity=0.017 Sum_probs=88.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 002199 455 GNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAK 534 (954)
Q Consensus 455 G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~ 534 (954)
+..++..|++++|+..|+++|+.+|.+. .++..+|.+|+..|++++|+..|+++++++|++..++..++.
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~----------~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ 72 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDA----------SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRH 72 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCH----------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCH----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 3455667777777777777777777775 677777777777777777777777777777777777666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCC
Q 002199 535 CHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSISSC 614 (954)
Q Consensus 535 iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~ 614 (954)
++...+..+++...+.+. .+...|.
T Consensus 73 ll~a~~~~~~a~~~~~~~-------------------------------------------------------~~~~~p~ 97 (264)
T d1zbpa1 73 LVKAAQARKDFAQGAATA-------------------------------------------------------KVLGENE 97 (264)
T ss_dssp HHHHHHHHHHHTTSCCCE-------------------------------------------------------ECCCSCH
T ss_pred HHHhccccHHHHHHhhhh-------------------------------------------------------hcccCch
Confidence 655444333332221111 1112344
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhh
Q 002199 615 SEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFA 651 (954)
Q Consensus 615 ~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~ 651 (954)
....+..++.++...|++++|+..+++++++.|....
T Consensus 98 ~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~ 134 (264)
T d1zbpa1 98 ELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134 (264)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence 5566777788888899999999999999888876543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.50 E-value=9.5e-08 Score=100.19 Aligned_cols=60 Identities=17% Similarity=0.165 Sum_probs=56.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 500 ATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 500 ~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
.-.+..|++++|+..|+++|+.+|++..++..+|.+|...|++++|+..|+++++++|+.
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~ 63 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 63 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc
Confidence 445778999999999999999999999999999999999999999999999999999975
|
| >d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSC20 (HSCB), N-terminal (J) domain species: Escherichia coli [TaxId: 562]
Probab=98.48 E-value=1.6e-08 Score=85.00 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=49.9
Q ss_pred cchhhhhccccCC--CHHHHHHHHHHHHHhhCCCCCCChhH---------HHHHHHHHHHCCCCCcccccccc
Q 002199 866 LDFYLILGVKASD--TAADIKKAYRKAALKHHPDKRSEYDQ---------EQEIRKATKESPQNSHYGRSSDA 927 (954)
Q Consensus 866 ~dyYkiLgv~~~a--~~~eIkkAYrklAl~~HPDK~~~~~~---------~e~~~~~~~~l~~~~~~r~~yD~ 927 (954)
.|||++|||++.+ +..+|+++||+++++||||+...... ...+.+++++|++ |..|+.|+-
T Consensus 1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~d-p~~R~~Yll 72 (76)
T d1fpoa1 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH-PLMRAEYLL 72 (76)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHH
Confidence 3799999999864 48899999999999999999654321 2367889999986 889998873
|
| >d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Auxilin J-domain species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.37 E-value=4.9e-08 Score=85.89 Aligned_cols=60 Identities=27% Similarity=0.216 Sum_probs=51.3
Q ss_pred CcchhhhhccccCCCHHHHHHHHHHHHHhhCCCCCCChh-------HHHHHHHHHHHCCCCCcccccc
Q 002199 865 PLDFYLILGVKASDTAADIKKAYRKAALKHHPDKRSEYD-------QEQEIRKATKESPQNSHYGRSS 925 (954)
Q Consensus 865 ~~dyYkiLgv~~~a~~~eIkkAYrklAl~~HPDK~~~~~-------~~e~~~~~~~~l~~~~~~r~~y 925 (954)
..++|++||+...++..+||++||++++.+||||+.... .+..+.+||++|++ +..|+.|
T Consensus 32 ~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d-~~~R~~Y 98 (98)
T d1nz6a_ 32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN-QGQKPLY 98 (98)
T ss_dssp TCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHT-TTCCCCC
T ss_pred cccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCC-HHHHhcC
Confidence 346799999999999999999999999999999976442 35678899999986 8888876
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.71 E-value=0.00018 Score=64.97 Aligned_cols=80 Identities=11% Similarity=0.010 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002199 723 HHKSAGNEAFKSG---RYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRR 799 (954)
Q Consensus 723 ~~~~lG~~~~~~g---~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~l 799 (954)
..++.|..+.... +..+||.+++.++..+| .....++++||.+|+++|+|++|+.+++++|+++|++..+...+
T Consensus 37 t~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p---~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~ 113 (124)
T d2pqrb1 37 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE---SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 113 (124)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence 4556677777554 45689999999988773 23458999999999999999999999999999999998887766
Q ss_pred HHHHHH
Q 002199 800 AALHEM 805 (954)
Q Consensus 800 A~ly~~ 805 (954)
-.+..+
T Consensus 114 ~~Ie~~ 119 (124)
T d2pqrb1 114 SMVEDK 119 (124)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.68 E-value=0.0002 Score=65.71 Aligned_cols=109 Identities=12% Similarity=-0.018 Sum_probs=87.8
Q ss_pred CHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCchhhHHH
Q 002199 682 KLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNIESRPFAAIC 761 (954)
Q Consensus 682 ~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~~~~p~~a~~ 761 (954)
++++|+.+|+++.+... .. +...+|. ....++++|+.+|+++.+.. ++.+
T Consensus 8 d~~~A~~~~~kaa~~g~--~~--------------------a~~~l~~--~~~~~~~~a~~~~~~aa~~g------~~~a 57 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE--MF--------------------GCLSLVS--NSQINKQKLFQYLSKACELN------SGNG 57 (133)
T ss_dssp HHHHHHHHHHHHHHTTC--TT--------------------HHHHHHT--CTTSCHHHHHHHHHHHHHTT------CHHH
T ss_pred CHHHHHHHHHHHHHCCC--hh--------------------hhhhhcc--ccccCHHHHHHHHhhhhccc------chhh
Confidence 67899999999987632 11 1222332 34578999999999998764 6788
Q ss_pred HHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHH
Q 002199 762 FCNRAAALQA----LGQIADAIADCSLAMALDENYTKAVSRRAALHEM----IRDYTQAASDLQRLVSI 822 (954)
Q Consensus 762 ~~~lA~~y~~----lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~----lg~~eeAi~~~ekAL~l 822 (954)
++.||.+|.. ..++.+|+.+|+++.+. .++.+.+.||.+|.. ..++.+|+.+|+++.++
T Consensus 58 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 58 CRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 8999999986 45799999999999876 578999999999987 56999999999999887
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.63 E-value=0.00015 Score=65.38 Aligned_cols=80 Identities=10% Similarity=-0.105 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 002199 448 CEMWRLRGNQAYKNN---NLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPN 524 (954)
Q Consensus 448 ae~l~~~G~~~~~~g---~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~ 524 (954)
.++.+..|..+.+.. +..+||.+++.+++.+|... ..+++++|.+|+++|+|++|+.+++++|+++|+
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~---------rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR---------RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhH---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 356777787777654 45689999999998888654 378999999999999999999999999999999
Q ss_pred cHHHHHHHHHHH
Q 002199 525 FLKVYMRAAKCH 536 (954)
Q Consensus 525 ~~~a~~~LA~iy 536 (954)
+..+...+-.|.
T Consensus 106 n~qA~~L~~~Ie 117 (124)
T d2pqrb1 106 NKQVGALKSMVE 117 (124)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 988776654443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.45 E-value=0.00066 Score=62.12 Aligned_cols=112 Identities=14% Similarity=0.001 Sum_probs=86.3
Q ss_pred cCHHHHHHHHHHhchhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHH
Q 002199 630 RKYEEAIQLCEHTLPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILE 709 (954)
Q Consensus 630 g~~eeAi~~~ekaL~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~ 709 (954)
.++++|+.+|+++.+..... +++.|+. ....++++|+.+|+++.+...
T Consensus 7 kd~~~A~~~~~kaa~~g~~~-------------------a~~~l~~--~~~~~~~~a~~~~~~aa~~g~----------- 54 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEMF-------------------GCLSLVS--NSQINKQKLFQYLSKACELNS----------- 54 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCTT-------------------HHHHHHT--CTTSCHHHHHHHHHHHHHTTC-----------
T ss_pred cCHHHHHHHHHHHHHCCChh-------------------hhhhhcc--ccccCHHHHHHHHhhhhcccc-----------
Confidence 47889999999988764322 3444543 456789999999999876421
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHH----hcCHHHHHHH
Q 002199 710 SSMSLAGTVRALLHHKSAGNEAFK----SGRYTEAVEHYTVALSTNIESRPFAAICFCNRAAALQA----LGQIADAIAD 781 (954)
Q Consensus 710 ~~~~l~~~~~~~~~~~~lG~~~~~----~g~~eeAi~~y~kAL~l~~~~~p~~a~~~~~lA~~y~~----lg~~eeAi~~ 781 (954)
..+...+|.+|.. ..++.+|+++|+++.+.. ++.+.++||.+|.. ..++.+|+.+
T Consensus 55 -----------~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g------~~~a~~~Lg~~y~~G~gv~~d~~~A~~~ 117 (133)
T d1klxa_ 55 -----------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN------DQDGCLILGYKQYAGKGVVKNEKQAVKT 117 (133)
T ss_dssp -----------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred -----------hhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC------cchHHHHHHHHHHcCCccCCCHHHHHHH
Confidence 2355668888876 678999999999998765 57788899999987 4689999999
Q ss_pred HHHHHHhCC
Q 002199 782 CSLAMALDE 790 (954)
Q Consensus 782 ~ekAL~ldP 790 (954)
|++|.++..
T Consensus 118 ~~~Aa~~G~ 126 (133)
T d1klxa_ 118 FEKACRLGS 126 (133)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHCCC
Confidence 999998753
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.53 Score=51.02 Aligned_cols=128 Identities=10% Similarity=-0.059 Sum_probs=81.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 002199 673 ISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTEAVEHYTVALSTNI 752 (954)
Q Consensus 673 Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~eeAi~~y~kAL~l~~ 752 (954)
.+.......+.+.|+..+.......+...... ......++..++..+..+.|..++.......
T Consensus 220 ~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~----------------~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~- 282 (450)
T d1qsaa1 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQI----------------QELRDIVAWRLMGNDVTDEQAKWRDDAIMRS- 282 (450)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHH----------------HHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-
T ss_pred HHHHHHhccChhHHHHHHHhhhhcccccHHHH----------------HHHHHHHHHHHHHcCchHHHHHHHHhhcccc-
Confidence 34444555688888888877665444332211 1112223444555677788888887776543
Q ss_pred CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 002199 753 ESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKAVSRRAALHEMIRDYTQAASDLQRLVS 821 (954)
Q Consensus 753 ~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~al~~lA~ly~~lg~~eeAi~~~ekAL~ 821 (954)
........ ++...+..+++..++..+...-.-........|.+|..+..+|+.++|...|..+..
T Consensus 283 ---~~~~~~~w-~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 283 ---QSTSLIER-RVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp ---CCHHHHHH-HHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ---cchHHHHH-HHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 22222222 333345678999988887754322234478889999999999999999999998865
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.99 E-value=1.4 Score=47.38 Aligned_cols=300 Identities=12% Similarity=0.020 Sum_probs=157.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CC--------
Q 002199 456 NQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVD---PN-------- 524 (954)
Q Consensus 456 ~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~---P~-------- 524 (954)
..+.+.+++...+..|. ..|.+. ..-...+.++...|+..+|...+..+-... |.
T Consensus 80 ~~L~~~~~w~~~~~~~~----~~p~~~----------~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~ 145 (450)
T d1qsaa1 80 NELARREDWRGLLAFSP----EKPGTT----------EAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSV 145 (450)
T ss_dssp HHHHHTTCHHHHHHHCC----SCCSSH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHH
T ss_pred HHHHhccCHHHHHHhcc----CCCCCH----------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 44556777766554442 244443 556677788889999999988877665432 21
Q ss_pred -------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHH--------------HHhHHHHH
Q 002199 525 -------FLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQK--------------AQKVTEYI 583 (954)
Q Consensus 525 -------~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~--------------~~~~~~~l 583 (954)
....+..+...++..|++..|...+..+ .++. .....+...+.. .......+
T Consensus 146 ~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l---~~~~----~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 218 (450)
T d1qsaa1 146 WRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQM---PADY----QTIASAIISLANNPNTVLTFARTTGATDFTRQMA 218 (450)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTC---CGGG----HHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhC---ChhH----HHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHH
Confidence 2333445566667777777776655431 1110 001111110000 00011122
Q ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHhcCCCCHHHHH----HHHHHHHHccCHHHHHHHHHHhchhhhhhhhhhhhccCc
Q 002199 584 NCSGKLLEQKTSEAASSALERINEALSISSCSEKLLE----MKADALYMLRKYEEAIQLCEHTLPVAEKNFASVLADNGS 659 (954)
Q Consensus 584 ~~a~~ll~~g~~~~a~eAL~~l~kaL~~~P~~~~~~~----~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~~~~~~~ 659 (954)
..+...+...+.. .++..+.......+.....+. .++..++..+..+.|...+...........
T Consensus 219 ~~~l~rla~~d~~---~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~--------- 286 (450)
T d1qsaa1 219 AVAFASVARQDAE---NARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS--------- 286 (450)
T ss_dssp HHHHHHHHHHCHH---HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH---------
T ss_pred HHHHHHHhccChh---HHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchH---------
Confidence 2222333334454 344444443333333222222 222222334455666655554433221110
Q ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Q 002199 660 VTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFKSGRYTE 739 (954)
Q Consensus 660 ~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~~g~~ee 739 (954)
. ....++. .+..+++..+...+... +..+.. .....+-+|..+...|+.++
T Consensus 287 ----~----~~w~~~~-al~~~~~~~~~~~~~~l----~~~~~~----------------~~r~~YW~gRa~~~~G~~~~ 337 (450)
T d1qsaa1 287 ----L----IERRVRM-ALGTGDRRGLNTWLARL----PMEAKE----------------KDEWRYWQADLLLERGREAE 337 (450)
T ss_dssp ----H----HHHHHHH-HHHHTCHHHHHHHHHHS----CTTGGG----------------SHHHHHHHHHHHHHTTCHHH
T ss_pred ----H----HHHHHHH-HHHcCChHHHHHHHHhc----Cccccc----------------HHHHHHHHHHHHHHcCChhh
Confidence 0 1112232 34456777776666543 222111 01233457777888888888
Q ss_pred HHHHHHHHHhhc------------------c------CCchhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH
Q 002199 740 AVEHYTVALSTN------------------I------ESRPFAAICFCNRAAALQALGQIADAIADCSLAMALDENYTKA 795 (954)
Q Consensus 740 Ai~~y~kAL~l~------------------~------~~~p~~a~~~~~lA~~y~~lg~~eeAi~~~ekAL~ldP~~~~a 795 (954)
|..+|..+.... + .........-..++..++.+|+...|...+..++.. .+..-
T Consensus 338 A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--~~~~~ 415 (450)
T d1qsaa1 338 AKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS--KSKTE 415 (450)
T ss_dssp HHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC--CCHHH
Confidence 888887765420 0 000112223446788899999999999999887653 35667
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHH
Q 002199 796 VSRRAALHEMIRDYTQAASDLQRL 819 (954)
Q Consensus 796 l~~lA~ly~~lg~~eeAi~~~ekA 819 (954)
+..+|.+....|.++.||....++
T Consensus 416 ~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 416 QAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCChhHHHHHHHHH
Confidence 788899999999999999876665
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.80 E-value=0.84 Score=47.51 Aligned_cols=181 Identities=14% Similarity=0.103 Sum_probs=107.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcccccCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 002199 452 RLRGNQAYKNNNLTEAEDFYTQGINSVPLSETAGCCIKPLVLCYSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMR 531 (954)
Q Consensus 452 ~~~G~~~~~~g~y~eAi~~y~kAL~~~P~~~~~~~~~~~la~~~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~ 531 (954)
-..|..+++.|.|+.|..+|+.. .-|..+..+|..++++..|.+.+.++ +....|..
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~------------------~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~ 74 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNV------------------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKE 74 (336)
T ss_dssp -----------CTTTHHHHHHHT------------------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhC------------------CCHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHH
Confidence 45688889999999999999732 12556778889999999999998876 56778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhc
Q 002199 532 AAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQKAQKVTEYINCSGKLLEQKTSEAASSALERINEALSI 611 (954)
Q Consensus 532 LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~ 611 (954)
+..++....+..-|... ...+..+|+ ........+...|.++ ..+.++..++..
T Consensus 75 ~~~~l~~~~e~~la~i~-~~~~~~~~d----------------------~l~~~v~~ye~~~~~e---~Li~~Le~~~~~ 128 (336)
T d1b89a_ 75 VCFACVDGKEFRLAQMC-GLHIVVHAD----------------------ELEELINYYQDRGYFE---ELITMLEAALGL 128 (336)
T ss_dssp HHHHHHHTTCHHHHHHT-TTTTTTCHH----------------------HHHHHHHHHHHTTCHH---HHHHHHHHHTTS
T ss_pred HHHHHHhCcHHHHHHHH-HHHhhcCHH----------------------HHHHHHHHHHHcCChH---HHHHHHHHHHcC
Confidence 88888887777654221 111222222 1122333444556666 678888888888
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHh-chhhhhhhhhhhhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 002199 612 SSCSEKLLEMKADALYMLRKYEEAIQLCEHT-LPVAEKNFASVLADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLL 690 (954)
Q Consensus 612 ~P~~~~~~~~lA~~~~~lg~~eeAi~~~eka-L~l~p~~~~~~~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l 690 (954)
.+.+...+..++.+|.+.+ .++-++.+... ...++......... .. .|--+..+|.+.|+++.|+..+
T Consensus 129 ~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~--------~~--l~~elv~Ly~~~~~~~~A~~~~ 197 (336)
T d1b89a_ 129 ERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQ--------AH--LWAELVFLYDKYEEYDNAIITM 197 (336)
T ss_dssp TTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHT--------TT--CHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHH--------cC--ChHHHHHHHHhcCCHHHHHHHH
Confidence 8888888888988777654 45555555543 22222211101000 01 2334566788899999887776
Q ss_pred HH
Q 002199 691 QK 692 (954)
Q Consensus 691 ~k 692 (954)
-.
T Consensus 198 i~ 199 (336)
T d1b89a_ 198 MN 199 (336)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.54 E-value=8.1 Score=39.58 Aligned_cols=180 Identities=13% Similarity=0.011 Sum_probs=94.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHH
Q 002199 495 YSNRAATRISLGRMREALEDCMMAATVDPNFLKVYMRAAKCHLVLGEIENAQHYYHKLLNSAAAVCLDRRITIEAADGLQ 574 (954)
Q Consensus 495 ~~~lA~~y~~lg~~eeAl~~~~kALel~P~~~~a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~~~~~~~~~ea~~~l~ 574 (954)
.-..|..+...|.|+.|+..|... .-+-++..++..++++..|.+.+.++-.
T Consensus 17 ~~~i~~~c~~~~lye~A~~lY~~~--------~d~~rl~~~~v~l~~~~~avd~~~k~~~-------------------- 68 (336)
T d1b89a_ 17 IQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANS-------------------- 68 (336)
T ss_dssp ------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHTC--------------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC--------CCHHHHHHHHHhhccHHHHHHHHHHcCC--------------------
Confidence 345677778888888888888743 2244556788889999998888766521
Q ss_pred HHHhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHhchhhhhhhhhh
Q 002199 575 KAQKVTEYINCSGKLLEQKTSEAASSALERINEALSI-SSCSEKLLEMKADALYMLRKYEEAIQLCEHTLPVAEKNFASV 653 (954)
Q Consensus 575 ~~~~~~~~l~~a~~ll~~g~~~~a~eAL~~l~kaL~~-~P~~~~~~~~lA~~~~~lg~~eeAi~~~ekaL~l~p~~~~~~ 653 (954)
...|......++....... .++... .-..+.-+......|...|.+++.+.+++.++...+.+..
T Consensus 69 ----~~~~k~~~~~l~~~~e~~l--------a~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~-- 134 (336)
T d1b89a_ 69 ----TRTWKEVCFACVDGKEFRL--------AQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMG-- 134 (336)
T ss_dssp ----HHHHHHHHHHHHHTTCHHH--------HHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHH--
T ss_pred ----HHHHHHHHHHHHhCcHHHH--------HHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchH--
Confidence 2223444444444443331 011111 1134455556778888999999999999999877554422
Q ss_pred hhccCcchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002199 654 LADNGSVTYSLARLWRWRLISKSYFCIGKLEVALDLLQKLEQVGSISDRYGSEILESSMSLAGTVRALLHHKSAGNEAFK 733 (954)
Q Consensus 654 ~~~~~~~~~~~~~l~a~~~Lg~~y~~lG~~eeAl~~l~kal~l~p~~~~~~~~~l~~~~~l~~~~~~~~~~~~lG~~~~~ 733 (954)
.+..++.+|.+. +.++-+++++..- . ... ...++..+ .....|..+..+|.+
T Consensus 135 ---------------~~~~L~~lyak~-~~~kl~e~l~~~s---~-~y~-~~k~~~~c-------~~~~l~~elv~Ly~~ 186 (336)
T d1b89a_ 135 ---------------MFTELAILYSKF-KPQKMREHLELFW---S-RVN-IPKVLRAA-------EQAHLWAELVFLYDK 186 (336)
T ss_dssp ---------------HHHHHHHHHHTT-CHHHHHHHHHHHS---T-TSC-HHHHHHHH-------HTTTCHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHh-ChHHHHHHHHhcc---c-cCC-HHHHHHHH-------HHcCChHHHHHHHHh
Confidence 344566655543 3445444444321 1 111 01111111 112223445667777
Q ss_pred cCCHHHHHHHH
Q 002199 734 SGRYTEAVEHY 744 (954)
Q Consensus 734 ~g~~eeAi~~y 744 (954)
.++++.|+..+
T Consensus 187 ~~~~~~A~~~~ 197 (336)
T d1b89a_ 187 YEEYDNAIITM 197 (336)
T ss_dssp TTCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 88888877665
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.01 E-value=19 Score=34.49 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhchhh
Q 002199 528 VYMRAAKCHLVLGEIENAQHYYHKLLNSAAAV 559 (954)
Q Consensus 528 a~~~LA~iy~~lG~~eeAl~~yekaL~l~P~~ 559 (954)
-+..+|.+..+.++|++.+.+.+++++.+|..
T Consensus 5 ~~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eL 36 (230)
T d2o02a1 5 ELVQKAKLAEQAERYDDMAACMKSVTEQGAEL 36 (230)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCC
Confidence 35566777777777777777777777776653
|