Citrus Sinensis ID: 002224

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-
Protein Sequence
MAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATPAASQAGQSGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQRNNDANVQKPQVSAPGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDDTPKLSNWVDSVDVNSSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPMCGGTWVRVV
Secondary Structure (PSIPRED)
ccccEEEcccccEEEEEEccccccEEEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHcccccccccccEEEEEEccccccEEEEEEEEEccccccccccccccccEEEEEEEccccccEEEEEcccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHEEcccccEEEEEEEcccEEEEEcccccccccEEEEccccccccccccccccccEEEEccccccEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEcccccccccHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEcccccccccEEEEccHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccccccccccccccccccEEEEcccccccccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEcccEEEcHHHHHccccccccccccccccccccHHHHHHcccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccEEEEEEccccccEEEHHHHccccccccccccccccccccccHHHHHHccccccccccccEEEEc
Secondary Structure Prediction (SSPRO)
ccccEEEEccccEEEEEEEcccccEEEEEEEcccccccEEEcccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEcHHHHccccccccccccEEEEEEccccccEEEEEEEEEccccccccccccccccccEEEEEccccccEEEEccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHccccccEEEEEEcccEEEEEcccccccccEEEEccccccccccccccccccEEEcccccccEEEEEEEcccccccccccEcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccEEEcEEEEEEcccccccccHHHHHHccccHHHEEHHEHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccccccccccccHcccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEcccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccccccccccccEEEccccccccccEEEEEccccEEEccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEcccEEccHHHHHHccccccccccccccccHHHHHHHHHcccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHccHHHHHHHcccccccHHHHHHHccccccEEEEEEcccccccEHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccccccEEEEc
Coil and Loop (DISEMBL)
maadviitdsgamhvagvpivnpsTVVVWEvtpgpgngfqaapktttsngvppslsppkwagfapLAAYLFSWQEYLLSEAKQgrkltdqnfsdaitlhcspvsnfsayvspeaaaqsaatttwgsgvtavafdptrggSVIAVVIVEgqymspydpdegpsitgwrvqrwessvqpVVLHqifgnptssfggqapmqtVWVSkvdtsiptsnfkihqlaaagptcdvwkttdsglekskivsfdpfdlpsdiRSLARIVYSAHGGEIAIALLRggvhifsgpnfapvdnyqisvgsaiaapafsstsccsasvwhdtnkdrtILKIIrvlppavpssqvkansSTWERAIAERFWWSLLVnvdwwdavgctqsaaEDGIVSLNSVIAVLdadfhslpsiqhrqqygpsldRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIesalinpsalvpdpwqasgetlsgidpeamAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAvtagtgsnrnmvasptqssatpaasqagqsgttsstgsTQMQAWVQGAIAKIsstndgvsnptsnpisgpssfmpisintgtfpgtpavrlIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANaqrnndanvqkpqvsapgkveeinsvpgkptsamvkldegqvaragqtvpgakgveegpagrpkmgfgnagqgytFEEVKVLFLILMDLCRRtaalshplpvsqvgssniqVRLHYIDGNYTVLPEVveaslgphmqnmprprgaDAAGLLLRElelhppaeewhrrnmfggpwsdpedvgpvddtpklsnwvdsvdvnssgnhdvyydshglwprkrrmserdaafglntSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQtaafaspgatnppnqndrEAWWISRwafgcpmcggtwvrvv
Flexible Loop (DISEMBL)
maadviitdsgamhvaGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLekskivsfdpfdlpsDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRvlppavpssqvkanssTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHavtagtgsnrnMVASPTQSSATPAASQAGQSGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLAnaqrnndanvqkpqvsapgkveeinsvpgkpTSAMVKLDegqvaragqtvpgakgveegpagrpkMGFGNAGQGYTFEEVKVLFLILMDLCRRTAALshplpvsqvgssnIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDDTPKLSNWVDSVdvnssgnhdvyydshglwpRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTAAfaspgatnppnQNDREAWWISRWAFGCPMCGGTWVRVV
Low Complexity Region (SEG)
MAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVasptqssatpaasqagqsgttsstgstqmqaWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISINTGTFPGTPAVRLIGDchflhrlcqlllfcfffrraqqPRLLANAQRNNDANVQKPQVSAPGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDDTPKLsnwvdsvdvnssgnhdvYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPMCGGTWVRVV
Disordered region (IsUnstruct)
****VIITDSGAMHVAGVPIVNPSTVVVWEVTP*************************KWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPS**VKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVT************************************************************************PISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQ*************************************************************************FGNAGQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEA*******************LLLREL***********************************NWVDSVDVNSSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTAAFA*************EAWWISRWAFGCPMCGGTWVRV*
Disordered Region (DISOPRED)
**ADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAP***********LSPPKWAGFAPLAAYLFSWQEYLL**************SDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTS*FGGQAPMQTVWVSKVDTSIPTSNFKIHQLA**********************SFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSI****QYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVT****************************************AWVQGAIA*****************SGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPR****************************************************************************GYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHM*NMP***GADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDV********************SGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTA*****************AWWISRWAFGCPMCGGTWVRVV
Disordered Region (DISEMBL)
MAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVS************WGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPA***********TWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNM****************************QMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQRNNDANVQKPQVSAPGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDDTPKLSNWVDSVDVNSSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPMCGGTWVRVV
Disordered Region (DISPRO)
*AADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNF***********************KSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVT*****************************************W**************************SSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQ***************GKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGV****AGRPKMGF***GQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDD****SNWVDSVDVNSSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPMCGGTWVRVV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKWAGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATPAASQAGQSGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQRNNDANVQKPQVSAPGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDDTPKLSNWVDSVDVNSSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPMCGGTWVRVV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	951	2.2.26 [Sep-21-2011]
F4JGZ1	1278	Mediator of RNA polymeras	yes	no	0.990	0.737	0.777	0.0

>sp|F4JGZ1|MED16_ARATH Mediator of RNA polymerase II transcription subunit 16 OS=Arabidopsis thaliana GN=MED16 PE=1 SV=1

 Score = 1471 bits (3809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 753/969 (77%), Positives = 826/969 (85%), Gaps = 27/969 (2%)

Query: 1    MAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKW 60
            MAAD IITDSGAMHVAGVPIVNPST+VVWEVTPGPGNG QA PK +T + VPPSLS   W
Sbjct: 319  MAADAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSSSW 378

Query: 61   AGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAA 120
             GFAPLAAYLFSWQEYL+SE KQG+K +DQ+ SDAI+L CSPVSNFSAYVSPEAAAQSAA
Sbjct: 379  TGFAPLAAYLFSWQEYLISEIKQGKKPSDQDSSDAISLSCSPVSNFSAYVSPEAAAQSAA 438

Query: 121  TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL 180
            TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL
Sbjct: 439  TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL 498

Query: 181  HQIFGNPTSSFGGQAPMQTVWVSKVDTSIP-TSNFKIHQLAAAGPTCDVWKTTDSGLEKS 239
            HQIFGNPTS+FGGQ P QTVWVS+VD SIP T +FK HQ+AAAGP+ D  K  DSG EK+
Sbjct: 499  HQIFGNPTSNFGGQVPTQTVWVSRVDMSIPPTKDFKNHQVAAAGPSVDAPKEPDSGDEKA 558

Query: 240  KIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAI 299
              V FDPFDLPSDIR+LARIVYSAHGGEIAIA LRGGVHIFSGP F+PV+NYQI+VGSAI
Sbjct: 559  NKVVFDPFDLPSDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQINVGSAI 618

Query: 300  AAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSL 359
            AAPAFS TSCCSASVWHD  KD  +LKIIRVLPPA+P +Q K + STWERAIAERFWWSL
Sbjct: 619  AAPAFSPTSCCSASVWHDAAKDCAMLKIIRVLPPALPRNQSKVDQSTWERAIAERFWWSL 678

Query: 360  LVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLE 419
            LV VDWWDAVGCTQSAAEDGIVSLNSVIAV+DADFHSLPS QHRQQYGP+LDRIKCRLLE
Sbjct: 679  LVGVDWWDAVGCTQSAAEDGIVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRIKCRLLE 738

Query: 420  GTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVE 479
            GTNAQEVRAMVLDMQARLLLDMLGKGIESAL+NPSALV +PW+  GET++GI+PEAMAV+
Sbjct: 739  GTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVFEPWRVDGETITGINPEAMAVD 798

Query: 480  PALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSAT 539
            PALV+SIQAYVDAVLDLASHFITRLRRYASFCRTLASHA +AGTGSNRN V SPTQ++++
Sbjct: 799  PALVSSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNNVTSPTQNASS 858

Query: 540  PAASQ----------AGQ-------SGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTS 582
            PA  Q           GQ       + TT+S+GS+ +QAW+QGAIAKISS+NDG SN T+
Sbjct: 859  PATPQVFPDKSLYLAVGQPTTTTTTTATTNSSGSSHVQAWMQGAIAKISSSNDG-SNSTA 917

Query: 583  NPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQ 642
            +PISG  +FMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCF  R ++ P      Q
Sbjct: 918  SPISGSPTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFLQRSSRFP------Q 971

Query: 643  RNNDANVQKPQVSAPGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGR 702
            RN D + QK Q  A  K+EE+NS   KPT A+ ++++ Q  R  Q   G KG++E  A  
Sbjct: 972  RNADVSSQKLQTGATSKLEEVNS--AKPTPALNRIEDAQGFRGAQLGTGVKGIDENSART 1029

Query: 703  PKMGFGNAGQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYT 762
             KMG GNAGQGYT+EEV+VLF ILMDLC+RT+ L+HPLP SQVGS NIQVRLHYIDGNYT
Sbjct: 1030 TKMGSGNAGQGYTYEEVRVLFHILMDLCKRTSGLAHPLPGSQVGSGNIQVRLHYIDGNYT 1089

Query: 763  VLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGP 822
            VLPEVVEA+LGPHMQNMPRPRGADAAGLLLRELELHPP+EEWHRRN+FGGP S+PED+  
Sbjct: 1090 VLPEVVEAALGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNLFGGPGSEPEDMIL 1149

Query: 823  VDDTPKLSNWVDSVDVNSSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIM 882
             DD  KLSN +D  D N SG  D Y   H LWPRKRRMSERDAAFG NTSVGLGAYLGIM
Sbjct: 1150 TDDVSKLSNSLDLPDTNFSGICDGYNRVHSLWPRKRRMSERDAAFGSNTSVGLGAYLGIM 1209

Query: 883  GSRRDVVTAVWKTGLEGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPM 942
            GSRRDVVTA WKTGLEGVWYKCIRCLRQT+AFASPGAT  PN N+RE WW SRW + CPM
Sbjct: 1210 GSRRDVVTATWKTGLEGVWYKCIRCLRQTSAFASPGATKQPNPNERETWWTSRWVYCCPM 1269

Query: 943  CGGTWVRVV 951
            CGGTWVRVV
Sbjct: 1270 CGGTWVRVV 1278

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Involved in the regulation of the circadian clock, in the control of flowering time, in freezing- and osmotic-stress tolerance and in both salicylic acid- and jasmonate-mediated defense gene expression.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	951
255556001	1255	conserved hypothetical protein [Ricinus	1.0	0.757	0.886	0.0
449457823	1220	PREDICTED: mediator of RNA polymerase II	1.0	0.779	0.838	0.0
449526315	1143	PREDICTED: mediator of RNA polymerase II	1.0	0.832	0.838	0.0
356549357	1189	PREDICTED: uncharacterized protein LOC10	0.994	0.795	0.819	0.0
356546243	1244	PREDICTED: uncharacterized protein LOC10	0.985	0.753	0.822	0.0
224079253	1328	predicted protein [Populus trichocarpa]	0.997	0.714	0.807	0.0
358346665	1245	hypothetical protein MTR_084s0009 [Medic	0.993	0.759	0.797	0.0
334186364	1267	sensitive to freezing 6 protein [Arabido	0.989	0.742	0.785	0.0
240255752	1278	sensitive to freezing 6 protein [Arabido	0.990	0.737	0.777	0.0
297809669	1219	hypothetical protein ARALYDRAFT_490126 [	0.941	0.734	0.781	0.0

>gi|255556001|ref|XP_002519035.1| conserved hypothetical protein [Ricinus communis] gi|223541698|gb|EEF43246.1| conserved hypothetical protein [Ricinus communis]

 Score = 1727 bits (4472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 844/952 (88%), Positives = 893/952 (93%), Gaps = 1/952 (0%)

Query: 1    MAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKW 60
            MAAD I+TDSGAMHVAGVPIVNPSTVVVWEVTPG G+GFQA PKT+ SNGVPPSL+PP W
Sbjct: 304  MAADAIVTDSGAMHVAGVPIVNPSTVVVWEVTPGLGHGFQATPKTSISNGVPPSLNPPNW 363

Query: 61   AGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAA 120
            +GFAPLAAYLFSWQEYL+SEAKQGRK TDQ+FS+ ++LHCSPVSNFSAYVSPEAAAQSAA
Sbjct: 364  SGFAPLAAYLFSWQEYLISEAKQGRKHTDQDFSNTVSLHCSPVSNFSAYVSPEAAAQSAA 423

Query: 121  TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL 180
            TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESS+QPVVL
Sbjct: 424  TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQPVVL 483

Query: 181  HQIFGNPTSSFGGQAPMQTVWVSKVDTSIP-TSNFKIHQLAAAGPTCDVWKTTDSGLEKS 239
            HQIFGNPTSSFGGQAPMQTVWVSKVDTSIP T++FK HQ  +AGP  D  K +DSG+EK+
Sbjct: 484  HQIFGNPTSSFGGQAPMQTVWVSKVDTSIPPTNDFKNHQTVSAGPAPDARKASDSGVEKA 543

Query: 240  KIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAI 299
            K ++FDPFDLPSD+RSLARIVYSAHGGEIAIA LRGGVHIFSGPNF PVD+YQI+VGSAI
Sbjct: 544  KSLTFDPFDLPSDVRSLARIVYSAHGGEIAIAFLRGGVHIFSGPNFTPVDSYQINVGSAI 603

Query: 300  AAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSL 359
            AAPAFSSTSCCSASVWHDT+KDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSL
Sbjct: 604  AAPAFSSTSCCSASVWHDTSKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSL 663

Query: 360  LVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLE 419
            LV VDWWDAVGCTQSAAED IVSLNSVIAVLDADFHSLPS QHRQQYGPSLDRIKCRLLE
Sbjct: 664  LVGVDWWDAVGCTQSAAEDNIVSLNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLE 723

Query: 420  GTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVE 479
            GTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVP+PWQASGETLSGIDPEAMAVE
Sbjct: 724  GTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPEPWQASGETLSGIDPEAMAVE 783

Query: 480  PALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSAT 539
            P+LV SIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNR+MV SPTQS+A+
Sbjct: 784  PSLVPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRSMVTSPTQSAAS 843

Query: 540  PAASQAGQSGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISINTG 599
            PA SQ GQ+GTTSSTGSTQMQAWVQGAIAKISSTNDGVSN T NPISGPSSFMPISINTG
Sbjct: 844  PATSQGGQNGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNATPNPISGPSSFMPISINTG 903

Query: 600  TFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQRNNDANVQKPQVSAPGK 659
            TFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRR Q PR +  AQR+ D N+QKPQ  APGK
Sbjct: 904  TFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRFIGVAQRSTDTNMQKPQSGAPGK 963

Query: 660  VEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQGYTFEEV 719
            VEE NSV  KP  AMV+ DE Q AR GQ VPG KGVEEGPAGR ++G+GNAGQGYTFEEV
Sbjct: 964  VEEANSVSSKPAQAMVRSDEVQTARGGQLVPGGKGVEEGPAGRSRLGYGNAGQGYTFEEV 1023

Query: 720  KVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNM 779
            KVLFLILMDLCRRTAAL+HPLPVSQVGSSNIQVRLHYI+GNYTVLPEVVEASLGPHMQNM
Sbjct: 1024 KVLFLILMDLCRRTAALAHPLPVSQVGSSNIQVRLHYINGNYTVLPEVVEASLGPHMQNM 1083

Query: 780  PRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDDTPKLSNWVDSVDVN 839
            PRPRGADAAGLLLRELELHPP+EEWHRRNMFGGPWSDPED+   DDTP++S++ DS+D +
Sbjct: 1084 PRPRGADAAGLLLRELELHPPSEEWHRRNMFGGPWSDPEDITSADDTPRMSSYTDSLDFS 1143

Query: 840  SSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEG 899
            S  N DVYY  +GLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEG
Sbjct: 1144 SLENCDVYYGVNGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEG 1203

Query: 900  VWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPMCGGTWVRVV 951
            VWYKCIRCLRQT+AFASPGATNPPNQNDREAWWISRWA+GCPMCGGTWVRVV
Sbjct: 1204 VWYKCIRCLRQTSAFASPGATNPPNQNDREAWWISRWAYGCPMCGGTWVRVV 1255

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457823|ref|XP_004146647.1| PREDICTED: mediator of RNA polymerase II transcription subunit 16-like [Cucumis sativus]

 Score = 1603 bits (4150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 801/955 (83%), Positives = 863/955 (90%), Gaps = 4/955 (0%)

Query: 1    MAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKW 60
            MAAD IITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQA PKTTT+NGVP  L+PP W
Sbjct: 266  MAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQATPKTTTNNGVPAPLNPPNW 325

Query: 61   AGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAA 120
            +GFAPLAAYLFSWQE+LLSE KQG+K TDQ+ +D I LHCSPVSNFSAYVSPEAAAQSA 
Sbjct: 326  SGFAPLAAYLFSWQEFLLSELKQGKKQTDQDVNDTIPLHCSPVSNFSAYVSPEAAAQSAT 385

Query: 121  TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL 180
            TTTWGSGVTAVAFDPTRGGSVIA+VIVEGQYMSPYDPDEGPSI+GWRVQRWESS+QPVVL
Sbjct: 386  TTTWGSGVTAVAFDPTRGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVL 445

Query: 181  HQIFGNPTSSFGGQAPMQTVWVSKVDTSI-PTSNFKIHQLAAAGPTCDVWKTTDSGLEKS 239
            HQIFGNPT+SF GQAP QTVW+SKVDTSI PTS+FK +Q A +GP  D+ K + + ++K+
Sbjct: 446  HQIFGNPTASFSGQAPTQTVWLSKVDTSISPTSDFKSNQSAVSGPNSDLRKLSGAYIDKA 505

Query: 240  KIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAI 299
            K V FDPFDLPSD+R+LARIVYSAHGGEIA+A L GGVHIFSGPNFAPV+NYQI+VG AI
Sbjct: 506  KKVCFDPFDLPSDVRTLARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAI 565

Query: 300  AAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSL 359
            AAPAFSSTSCCSASVWHD NKD T+L+IIRVLPPA PS+Q+KANSSTWERAIAERFWWSL
Sbjct: 566  AAPAFSSTSCCSASVWHDVNKDCTMLRIIRVLPPAAPSNQLKANSSTWERAIAERFWWSL 625

Query: 360  LVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLE 419
            LV VDWWDAVGCTQSAAEDGIVS NSVIAVLDADFHSLPS QHRQQYGPSLDRIKCRLLE
Sbjct: 626  LVGVDWWDAVGCTQSAAEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLE 685

Query: 420  GTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVE 479
            GTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSAL+ +PW ASGETLSGIDPEAMAVE
Sbjct: 686  GTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVE 745

Query: 480  PALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSAT 539
            PAL+ SIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRN+VASPT SSA+
Sbjct: 746  PALIPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNIVASPTPSSAS 805

Query: 540  PAASQA---GQSGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISI 596
            PA SQ     QS TTS+TGSTQMQAWVQGAIAKISST DGV++ T NPISG S+FMPISI
Sbjct: 806  PATSQGEFSAQSSTTSTTGSTQMQAWVQGAIAKISSTTDGVTSSTPNPISGSSTFMPISI 865

Query: 597  NTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQRNNDANVQKPQVSA 656
            NTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRR Q  R +  +QRN DAN QKPQ S 
Sbjct: 866  NTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLSRYIGISQRNADANSQKPQPSV 925

Query: 657  PGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQGYTF 716
            PGKVEEINS   KP   ++K DE Q+ RA Q V GAKG EEG AGR ++G GNAGQGYT 
Sbjct: 926  PGKVEEINSNSVKPVQNIIKPDESQIVRASQLVTGAKGAEEGLAGRSRIGTGNAGQGYTS 985

Query: 717  EEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHM 776
            EEVKVLFLIL+DLCRRTA+L HPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHM
Sbjct: 986  EEVKVLFLILIDLCRRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHM 1045

Query: 777  QNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDDTPKLSNWVDSV 836
            QNMPRPRGADAAGLLLRELELHPPAEEWHRRNM+GGPWSD +D+GP DD  KLSN  D +
Sbjct: 1046 QNMPRPRGADAAGLLLRELELHPPAEEWHRRNMYGGPWSDVDDLGPNDDNSKLSNSSDPL 1105

Query: 837  DVNSSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTG 896
            D+NS  N +VYY ++GLWPRKRRMSERDAAFGLNTS+GLGA+LGIMGSRRDVVTAVWKTG
Sbjct: 1106 DLNSLENCNVYYGANGLWPRKRRMSERDAAFGLNTSIGLGAFLGIMGSRRDVVTAVWKTG 1165

Query: 897  LEGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPMCGGTWVRVV 951
            LEGVWYKC+RCLRQT+AFASPGATN   QN+RE WWISRWA+GCPMCGGTWVRVV
Sbjct: 1166 LEGVWYKCMRCLRQTSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTWVRVV 1220

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526315|ref|XP_004170159.1| PREDICTED: mediator of RNA polymerase II transcription subunit 16-like [Cucumis sativus]

 Score = 1602 bits (4149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 801/955 (83%), Positives = 863/955 (90%), Gaps = 4/955 (0%)

Query: 1    MAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKW 60
            MAAD IITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQA PKTTT+NGVP  L+PP W
Sbjct: 189  MAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQATPKTTTNNGVPAPLNPPNW 248

Query: 61   AGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAA 120
            +GFAPLAAYLFSWQE+LLSE KQG+K TDQ+ +D I LHCSPVSNFSAYVSPEAAAQSA 
Sbjct: 249  SGFAPLAAYLFSWQEFLLSELKQGKKQTDQDVNDTIPLHCSPVSNFSAYVSPEAAAQSAT 308

Query: 121  TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL 180
            TTTWGSGVTAVAFDPTRGGSVIA+VIVEGQYMSPYDPDEGPSI+GWRVQRWESS+QPVVL
Sbjct: 309  TTTWGSGVTAVAFDPTRGGSVIAIVIVEGQYMSPYDPDEGPSISGWRVQRWESSLQPVVL 368

Query: 181  HQIFGNPTSSFGGQAPMQTVWVSKVDTSI-PTSNFKIHQLAAAGPTCDVWKTTDSGLEKS 239
            HQIFGNPT+SF GQAP QTVW+SKVDTSI PTS+FK +Q A +GP  D+ K + + ++K+
Sbjct: 369  HQIFGNPTASFSGQAPTQTVWLSKVDTSISPTSDFKSNQSAVSGPNSDLRKLSGAYIDKA 428

Query: 240  KIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAI 299
            K V FDPFDLPSD+R+LARIVYSAHGGEIA+A L GGVHIFSGPNFAPV+NYQI+VG AI
Sbjct: 429  KKVCFDPFDLPSDVRTLARIVYSAHGGEIAVAFLCGGVHIFSGPNFAPVENYQINVGPAI 488

Query: 300  AAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSL 359
            AAPAFSSTSCCSASVWHD NKD T+L+IIRVLPPA PS+Q+KANSSTWERAIAERFWWSL
Sbjct: 489  AAPAFSSTSCCSASVWHDVNKDCTMLRIIRVLPPAAPSNQLKANSSTWERAIAERFWWSL 548

Query: 360  LVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLE 419
            LV VDWWDAVGCTQSAAEDGIVS NSVIAVLDADFHSLPS QHRQQYGPSLDRIKCRLLE
Sbjct: 549  LVGVDWWDAVGCTQSAAEDGIVSPNSVIAVLDADFHSLPSSQHRQQYGPSLDRIKCRLLE 608

Query: 420  GTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVE 479
            GTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSAL+ +PW ASGETLSGIDPEAMAVE
Sbjct: 609  GTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALLSEPWHASGETLSGIDPEAMAVE 668

Query: 480  PALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSAT 539
            PAL+ SIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRN+VASPT SSA+
Sbjct: 669  PALIPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNIVASPTPSSAS 728

Query: 540  PAASQA---GQSGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISI 596
            PA SQ     QS TTS+TGSTQMQAWVQGAIAKISST DGV++ T NPISG S+FMPISI
Sbjct: 729  PATSQGEFSAQSSTTSTTGSTQMQAWVQGAIAKISSTTDGVTSSTPNPISGSSTFMPISI 788

Query: 597  NTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQRNNDANVQKPQVSA 656
            NTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRR Q  R +  +QRN DAN QKPQ S 
Sbjct: 789  NTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLSRYIGISQRNADANSQKPQPSV 848

Query: 657  PGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQGYTF 716
            PGKVEEINS   KP   ++K DE Q+ RA Q V GAKG EEG AGR ++G GNAGQGYT 
Sbjct: 849  PGKVEEINSNSVKPVQNIIKPDESQIVRASQLVTGAKGAEEGLAGRSRIGTGNAGQGYTS 908

Query: 717  EEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHM 776
            EEVKVLFLIL+DLCRRTA+L HPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHM
Sbjct: 909  EEVKVLFLILIDLCRRTASLPHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHM 968

Query: 777  QNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDDTPKLSNWVDSV 836
            QNMPRPRGADAAGLLLRELELHPPAEEWHRRNM+GGPWSD +D+GP DD  KLSN  D +
Sbjct: 969  QNMPRPRGADAAGLLLRELELHPPAEEWHRRNMYGGPWSDVDDLGPNDDNSKLSNSSDPL 1028

Query: 837  DVNSSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTG 896
            D+NS  N +VYY ++GLWPRKRRMSERDAAFGLNTS+GLGA+LGIMGSRRDVVTAVWKTG
Sbjct: 1029 DLNSLENCNVYYGANGLWPRKRRMSERDAAFGLNTSIGLGAFLGIMGSRRDVVTAVWKTG 1088

Query: 897  LEGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPMCGGTWVRVV 951
            LEGVWYKC+RCLRQT+AFASPGATN   QN+RE WWISRWA+GCPMCGGTWVRVV
Sbjct: 1089 LEGVWYKCMRCLRQTSAFASPGATNDTTQNERETWWISRWAYGCPMCGGTWVRVV 1143

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549357|ref|XP_003543060.1| PREDICTED: uncharacterized protein LOC100812938 [Glycine max]

 Score = 1580 bits (4091), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 783/955 (81%), Positives = 844/955 (88%), Gaps = 9/955 (0%)

Query: 1    MAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKW 60
            MA D IITDSGAMHVAGVPIVNPST+VVWEV PGPGNGFQ  P+T+T+NGVPP LS P W
Sbjct: 240  MAGDAIITDSGAMHVAGVPIVNPSTIVVWEVMPGPGNGFQVIPRTSTNNGVPPPLSSPNW 299

Query: 61   AGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAA 120
             GFAPLAAYLFSWQ++LLSE KQG+  T+QN  D+I L+CSPVSNFSAYVSPE AAQ+AA
Sbjct: 300  TGFAPLAAYLFSWQDHLLSEEKQGKNQTNQNLGDSIPLNCSPVSNFSAYVSPETAAQTAA 359

Query: 121  TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL 180
            TTTWGSGVTAVAFDPT GGSVIAVVI EGQYMSPYDPDEGPSITGWRVQ WESS+Q VVL
Sbjct: 360  TTTWGSGVTAVAFDPTCGGSVIAVVIAEGQYMSPYDPDEGPSITGWRVQLWESSLQHVVL 419

Query: 181  HQIFGNPTSSFGGQAPMQTVWVSKVDTSIP-TSNFKIHQLAAAGPTCDVWKTTDSGLEKS 239
            H IFGNPTSS GGQ PMQTVW +KVD SIP T++FK HQ  A G   D+ K ++ G +KS
Sbjct: 420  HPIFGNPTSSMGGQPPMQTVWQTKVDLSIPPTNDFKNHQAPAVGMNTDIQKVSEFGFDKS 479

Query: 240  KIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAI 299
            K V+FDPFDLPSD+R+LARIVYS HGGEIAIA LRGGVHIFSGPNFAPVDNYQISVGSAI
Sbjct: 480  KRVNFDPFDLPSDVRALARIVYSPHGGEIAIAFLRGGVHIFSGPNFAPVDNYQISVGSAI 539

Query: 300  AAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSL 359
            AAPAFSSTSCCSASVWHD +KD+TILKIIRVLPPA+P+SQVK NSS WERAIAERFWWSL
Sbjct: 540  AAPAFSSTSCCSASVWHDPSKDQTILKIIRVLPPAIPTSQVKTNSSNWERAIAERFWWSL 599

Query: 360  LVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLE 419
            LV V+WWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPS QHRQQY PSLDRIKCRLLE
Sbjct: 600  LVGVNWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSAQHRQQYCPSLDRIKCRLLE 659

Query: 420  GTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVE 479
            G NAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQ S ETL+ IDPEA+AVE
Sbjct: 660  GANAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQVSSETLTSIDPEAVAVE 719

Query: 480  PALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSAT 539
            PALV  +QAYVD+VLDLASHFITRLRRYASFCRTLASHAVTAGTG+NRN+VASP Q SAT
Sbjct: 720  PALVPCVQAYVDSVLDLASHFITRLRRYASFCRTLASHAVTAGTGNNRNVVASPAQCSAT 779

Query: 540  PAASQAGQSGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTSN-PISGPSSFMPISINT 598
            PA SQ GQ+GTTSS+GSTQMQAWVQGAIAKISST DGVSNP  N PISGPSSFMPISINT
Sbjct: 780  PATSQGGQNGTTSSSGSTQMQAWVQGAIAKISSTTDGVSNPVPNPPISGPSSFMPISINT 839

Query: 599  GTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQRNNDANVQKPQ--VSA 656
            GTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPR     QR  D N+QKPQ   S 
Sbjct: 840  GTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRYAGGVQRTADTNLQKPQPNASV 899

Query: 657  PGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQGYTF 716
            PGKVEEI     KP S +V+ D+GQ  R  Q VP +KG EE   GR ++G GNAG GYT+
Sbjct: 900  PGKVEEI----AKPVSTVVRPDDGQAGRVSQLVPASKGGEEPSPGRSRIGTGNAGLGYTY 955

Query: 717  EEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHM 776
            EEVKVLFL+LMDLCRRTA L HPLPVSQVGS+NIQVRLHYIDGNYTVLPEVVEA+LGPHM
Sbjct: 956  EEVKVLFLVLMDLCRRTAGLQHPLPVSQVGSNNIQVRLHYIDGNYTVLPEVVEAALGPHM 1015

Query: 777  QNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDDTPKLSNWVDSV 836
            QNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDP+D+   +D PKL + ++ +
Sbjct: 1016 QNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPDDLDSANDAPKLIS-LNPL 1074

Query: 837  DVNSSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTG 896
            D +S  N DVYY ++GLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTA+WKTG
Sbjct: 1075 DSSSLENCDVYYGANGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTALWKTG 1134

Query: 897  LEGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPMCGGTWVRVV 951
            LEG+WYKCIRCLRQT AFASP +TN P+QNDRE WWISRWA+GCPMCGGTWVRVV
Sbjct: 1135 LEGIWYKCIRCLRQTCAFASPASTNLPSQNDREIWWISRWAYGCPMCGGTWVRVV 1189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546243|ref|XP_003541539.1| PREDICTED: uncharacterized protein LOC100793949 [Glycine max]

 Score = 1574 bits (4076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 785/954 (82%), Positives = 844/954 (88%), Gaps = 17/954 (1%)

Query: 1    MAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKW 60
            MA D IITDSGAMHVAGVPIVNPST+VVWEV PGPGNGFQ  PKT+T+ GVPP LSPP W
Sbjct: 305  MAGDAIITDSGAMHVAGVPIVNPSTIVVWEVAPGPGNGFQVTPKTSTTCGVPP-LSPPNW 363

Query: 61   AGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAA 120
             GFA LAAYLFSWQ+YLLSEAKQGRK TDQN  DA+ L+CSPVSNFSAYVSPEAAAQSAA
Sbjct: 364  DGFAALAAYLFSWQDYLLSEAKQGRKQTDQNLVDAVPLYCSPVSNFSAYVSPEAAAQSAA 423

Query: 121  TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL 180
            TTTWGSGVTAVAFDPTR GSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESS+Q VVL
Sbjct: 424  TTTWGSGVTAVAFDPTRAGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQHVVL 483

Query: 181  HQIFGNPTSSFGGQAPMQTVWVSKVDTSIP-TSNFKIHQLAAAGPTCDVWKTTDSGLEKS 239
            H IFGNPTSS GGQ PMQTVW SKVD SIP T++FK HQ  A G + DV K ++S  +KS
Sbjct: 484  HPIFGNPTSSMGGQPPMQTVWQSKVDLSIPPTNDFKNHQSPAIGMSSDVQKVSESVSDKS 543

Query: 240  KIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAI 299
            K V+FDPFDLPSD+R+LAR+VYSAHGGEIAIA LRGGVH+FSGPNF PVDNYQI+VGSAI
Sbjct: 544  KRVNFDPFDLPSDVRALARVVYSAHGGEIAIAFLRGGVHVFSGPNFTPVDNYQINVGSAI 603

Query: 300  AAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSL 359
            AAPAFSSTSCCSASVWHD++K+ TIL+IIRVLPP++P SQ KANSSTWERAIAERFWWSL
Sbjct: 604  AAPAFSSTSCCSASVWHDSSKNCTILRIIRVLPPSIPISQAKANSSTWERAIAERFWWSL 663

Query: 360  LVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLE 419
            LV+VDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPS+QHRQQYGPSLDRIKCRLLE
Sbjct: 664  LVSVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSVQHRQQYGPSLDRIKCRLLE 723

Query: 420  GTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVE 479
            G+NAQEVRAMVLDMQARLLLDMLGKGIESALIN SALVP+ WQASGETLS IDPE+MAVE
Sbjct: 724  GSNAQEVRAMVLDMQARLLLDMLGKGIESALINSSALVPELWQASGETLSSIDPESMAVE 783

Query: 480  PALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSAT 539
            PAL+ SIQAYVD+VLDLASHFITRLRRYASFCRTLASHAVTAG+GSNRNMVASPTQSSAT
Sbjct: 784  PALIPSIQAYVDSVLDLASHFITRLRRYASFCRTLASHAVTAGSGSNRNMVASPTQSSAT 843

Query: 540  PAASQAGQSGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISINTG 599
            PA SQ GQ+GT+SS GS Q+Q WVQGAIAKIS+T DG SNPT NPISGPS+FMPISINTG
Sbjct: 844  PATSQGGQNGTSSSMGSAQLQTWVQGAIAKISNTTDGGSNPTPNPISGPSTFMPISINTG 903

Query: 600  TFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQRNNDANVQKPQVS--AP 657
            TFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRR Q PR +    R +D N+QKPQ +  AP
Sbjct: 904  TFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRYI---NRTSDTNIQKPQSNTPAP 960

Query: 658  GKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQGYTFE 717
            GKVEEI     KP SA+VK D+GQ  R      GAKG EE P+GR ++G GNAGQGYTFE
Sbjct: 961  GKVEEI----AKPVSAVVKSDDGQTGRT-----GAKGAEEVPSGRSRLGSGNAGQGYTFE 1011

Query: 718  EVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQ 777
            EVKVLF++LMDLCRRTA L HPLPVSQVGS+NIQVRLHYIDGNY+V PEVVEASLGPHMQ
Sbjct: 1012 EVKVLFMMLMDLCRRTAGLQHPLPVSQVGSNNIQVRLHYIDGNYSVQPEVVEASLGPHMQ 1071

Query: 778  NMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDDTPKLSNWVDSVD 837
            NMPRPRGADAAGLLLRELELHPPAEEWHRRNMFG PWSDPEDV   +DTPKL N  D +D
Sbjct: 1072 NMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGAPWSDPEDVDCANDTPKLVN-SDPLD 1130

Query: 838  VNSSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGL 897
             +S  + DVYY +H LWPRKRRMSERDAAFGLNTSVGLG YLGIMGSRRDVVTA WKTGL
Sbjct: 1131 FSSLEHCDVYYGTHRLWPRKRRMSERDAAFGLNTSVGLGGYLGIMGSRRDVVTATWKTGL 1190

Query: 898  EGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPMCGGTWVRVV 951
            EGVWYKC+RC RQT+AF SP AT  P+QNDRE WWISRW   CPMCGGTW RVV
Sbjct: 1191 EGVWYKCVRCQRQTSAFTSPDATASPSQNDREMWWISRWVHSCPMCGGTWARVV 1244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079253|ref|XP_002305810.1| predicted protein [Populus trichocarpa] gi|222848774|gb|EEE86321.1| predicted protein [Populus trichocarpa]

 Score = 1556 bits (4029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 810/1003 (80%), Positives = 854/1003 (85%), Gaps = 54/1003 (5%)

Query: 1    MAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKW 60
            MAAD IITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQA P  + SNGVPPS+ PP W
Sbjct: 328  MAADAIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQATPMASASNGVPPSVKPPNW 387

Query: 61   AGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAA 120
            +GFAPLAAYLFSWQE+L+SEA QG+K  D++F+D ++LHCSPVSNFSAYVSPEAAAQSAA
Sbjct: 388  SGFAPLAAYLFSWQEHLMSEAMQGKKHMDKDFTDTVSLHCSPVSNFSAYVSPEAAAQSAA 447

Query: 121  TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL 180
            TTTWGSGV+AVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGP ITGWRVQRWESS+QPVVL
Sbjct: 448  TTTWGSGVSAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPLITGWRVQRWESSLQPVVL 507

Query: 181  HQIFGNPTSSFGGQAPMQTVWVSKVDTSI-PTSNFKIHQLAAAGPTCDVWKTTDSGLEKS 239
            H IFGNPTS FGGQAPMQTVWVSKVDTSI PT++FK  Q A A P  D  K +DSG EK+
Sbjct: 508  HPIFGNPTSGFGGQAPMQTVWVSKVDTSIPPTNDFKNLQAAPAVPISDGRKASDSGSEKT 567

Query: 240  KIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAI 299
            K V+FDP DLPSD+R+LARIVYSAHGGEIAIA LRGGVHIFSGPNF  VDNYQI+VGSAI
Sbjct: 568  KRVTFDPSDLPSDVRTLARIVYSAHGGEIAIAFLRGGVHIFSGPNFTLVDNYQINVGSAI 627

Query: 300  AAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSL 359
            AAPAFSSTSC SASVWHDT KDR+ILKIIRVLPPA P SQVKANS+ WERAIAERFWWSL
Sbjct: 628  AAPAFSSTSCSSASVWHDTRKDRSILKIIRVLPPAGPISQVKANSAIWERAIAERFWWSL 687

Query: 360  LVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGP----------- 408
            LV VDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPS QHRQ YGP           
Sbjct: 688  LVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSTQHRQLYGPNIRLGLDVEWS 747

Query: 409  ------SLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQ 462
                  SLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALV +PWQ
Sbjct: 748  CGTLHKSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVLEPWQ 807

Query: 463  ASGETLSGIDPEAMAVEPALVASI---------------------------------QAY 489
            ASGETLSGIDPEAM VEP LV +I                                 QAY
Sbjct: 808  ASGETLSGIDPEAMTVEPNLVPNIQFRLVSLLYPSTQTELVGYFPASSQLKHLPLLMQAY 867

Query: 490  VDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATPAASQAGQSG 549
            VDAVLDLASHFITRLRRYASFCRTLASHAVTAG GSNRN V SPTQSSA+PA +Q GQSG
Sbjct: 868  VDAVLDLASHFITRLRRYASFCRTLASHAVTAGAGSNRNTVTSPTQSSASPAPNQGGQSG 927

Query: 550  TTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISINTGTFPGTPAVRL 609
             TSSTGSTQMQAWVQGAIAKISST DGVS  T NPISGPSSFMPISINTGTFPGTPAVRL
Sbjct: 928  GTSSTGSTQMQAWVQGAIAKISSTTDGVSTATPNPISGPSSFMPISINTGTFPGTPAVRL 987

Query: 610  IGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQRN-NDANVQKPQVSAPGKVEEINSVPG 668
            IGDCHFLHRLCQLLLFCFFFRR Q PR     QRN  D N QKPQ  A GKVEEIN+V  
Sbjct: 988  IGDCHFLHRLCQLLLFCFFFRRTQLPRFAGGTQRNPTDTNAQKPQSGAAGKVEEINTVSS 1047

Query: 669  KPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQGYTFEEVKVLFLILMD 728
            KP  A V+ DEGQ  R  Q VPGAK VEEGPAGR ++G GNAGQGY+ EEV VLFLILMD
Sbjct: 1048 KPAPAAVRSDEGQAVRGSQVVPGAKAVEEGPAGRHRVGSGNAGQGYSSEEVTVLFLILMD 1107

Query: 729  LCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAA 788
            LCRRTA+L HPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAA
Sbjct: 1108 LCRRTASLGHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAA 1167

Query: 789  GLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDDTPKLSNWVDSVDVNSSGNHDVYY 848
            GLLLRELELHPP+EEWHRRNMFGGPWSDPED+G  DDT KL N  +S+D +S  N DVYY
Sbjct: 1168 GLLLRELELHPPSEEWHRRNMFGGPWSDPEDMGS-DDTSKL-NSTNSLDFSSLENCDVYY 1225

Query: 849  DSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCL 908
             +HGLWPRKRR+SERDAA GLNTS GLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCL
Sbjct: 1226 GAHGLWPRKRRLSERDAAVGLNTSAGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCL 1285

Query: 909  RQTAAFASPGATNPPNQNDREAWWISRWAFGCPMCGGTWVRVV 951
            RQT+A ASPGA NPP+QN+REAWWISRWA+GCPMCGGTWVRVV
Sbjct: 1286 RQTSALASPGAANPPDQNEREAWWISRWAYGCPMCGGTWVRVV 1328

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346665|ref|XP_003637386.1| hypothetical protein MTR_084s0009 [Medicago truncatula] gi|355503321|gb|AES84524.1| hypothetical protein MTR_084s0009 [Medicago truncatula]

 Score = 1542 bits (3993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 759/952 (79%), Positives = 832/952 (87%), Gaps = 7/952 (0%)

Query: 1    MAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKW 60
            MA D IITDSGAMHVAGVPIVNPST+VVWEVTPGPGNGFQ+ P T+T +GVPP + PP W
Sbjct: 300  MAGDAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGFQSCPMTSTKSGVPPHI-PPNW 358

Query: 61   AGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAA 120
             GFAPLAAYLF WQ++LLS AKQG+KLT++N  D++ L+CSPVSNFSAYVSPEAAAQSAA
Sbjct: 359  DGFAPLAAYLFCWQDHLLSLAKQGKKLTEKNIGDSVPLYCSPVSNFSAYVSPEAAAQSAA 418

Query: 121  TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL 180
            TTTWGSGVTAVAFDPTR GSVIAVVIVEGQYMSPYDPDEGP+ITGWRVQRWESS++ VVL
Sbjct: 419  TTTWGSGVTAVAFDPTRAGSVIAVVIVEGQYMSPYDPDEGPTITGWRVQRWESSLEQVVL 478

Query: 181  HQIFGNPTSSFGGQAPMQTVWVSKVDTSI-PTSNFKIHQLAAAGPTCDVWKTTDSGLEKS 239
            H IFGNPTSS GGQ PMQTVW SKVD SI PT +F+ H+    G   DV K ++   +KS
Sbjct: 479  HPIFGNPTSSMGGQPPMQTVWQSKVDLSILPTDDFRNHRSPTIGMATDVQKVSELISDKS 538

Query: 240  KIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAI 299
            K V+FDPFDLPSD+R+LARIVYSAHGGEIAIA LRGGVHIFSGPNF  VDNYQI+VGSAI
Sbjct: 539  KRVNFDPFDLPSDVRTLARIVYSAHGGEIAIAFLRGGVHIFSGPNFEQVDNYQITVGSAI 598

Query: 300  AAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSL 359
            AAPAFSSTSCCSASVWHDT  + TILKIIRVLPP VP SQ KANSSTWERAIAERFWWSL
Sbjct: 599  AAPAFSSTSCCSASVWHDTINNYTILKIIRVLPPPVPISQAKANSSTWERAIAERFWWSL 658

Query: 360  LVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLE 419
            LV VDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPS+QHRQQYGPSLDRIKCRLLE
Sbjct: 659  LVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSVQHRQQYGPSLDRIKCRLLE 718

Query: 420  GTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVE 479
            G+NAQEVRAMVLDMQARLLLDMLG+GIESALI+P+  VP+ WQASGETLS ID E MAVE
Sbjct: 719  GSNAQEVRAMVLDMQARLLLDMLGRGIESALIDPTQFVPELWQASGETLSNIDSETMAVE 778

Query: 480  PALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSAT 539
            PALV  +QAYVDA+LDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSAT
Sbjct: 779  PALVPCVQAYVDAILDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSAT 838

Query: 540  PAASQAGQSGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISINTG 599
            PA SQ GQ+G+TSS G+ Q+Q WVQGAIAKIS+T +G SNPT NPISGPSSFMPISINTG
Sbjct: 839  PATSQGGQNGSTSSMGTVQLQTWVQGAIAKISNTTEGGSNPTPNPISGPSSFMPISINTG 898

Query: 600  TFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQRNNDANVQKPQVSAPGK 659
            TFPGTPAVRLIGDC FLHRLCQLLLFCFFFRR Q PR +  A R ND+N QK    A GK
Sbjct: 899  TFPGTPAVRLIGDCQFLHRLCQLLLFCFFFRRTQIPRYMGAANRTNDSNTQKSNAPASGK 958

Query: 660  VEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQGYTFEEV 719
            VEEI     KP SA+ K ++G   RAGQ + G KG EE P+GR ++G GNAGQGYTFEEV
Sbjct: 959  VEEI----AKPVSAVAKSEDGLTGRAGQLISGPKGGEEAPSGRSRLGSGNAGQGYTFEEV 1014

Query: 720  KVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNM 779
            KVLF++LM+LCRRT+ L HPLP+SQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNM
Sbjct: 1015 KVLFMMLMELCRRTSTLQHPLPISQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNM 1074

Query: 780  PRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDDTPKLSNWVDSVDVN 839
            PRPRGADAAGLLLRELELHPP+EEW+RRNMFGGPWSDP+D+   +D PK+    D +D++
Sbjct: 1075 PRPRGADAAGLLLRELELHPPSEEWNRRNMFGGPWSDPDDIDCANDQPKIVC-SDPLDLS 1133

Query: 840  SSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEG 899
            S+ + D Y  +H LWPRKRRMSERDAAFGLN+SVGLGAYLGIMGSRRDVVTA WKTGLEG
Sbjct: 1134 STEHCDAYDGTHRLWPRKRRMSERDAAFGLNSSVGLGAYLGIMGSRRDVVTATWKTGLEG 1193

Query: 900  VWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPMCGGTWVRVV 951
            VWYKCIRC RQT+AF SP +T  P+Q+ RE WWISRWA+GCPMCGGTWVRVV
Sbjct: 1194 VWYKCIRCQRQTSAFTSPASTTSPSQSSRELWWISRWAYGCPMCGGTWVRVV 1245

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186364|ref|NP_001190676.1| sensitive to freezing 6 protein [Arabidopsis thaliana] gi|332657042|gb|AEE82442.1| sensitive to freezing 6 protein [Arabidopsis thaliana]

 Score = 1474 bits (3816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 753/959 (78%), Positives = 826/959 (86%), Gaps = 18/959 (1%)

Query: 1    MAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKW 60
            MAAD IITDSGAMHVAGVPIVNPST+VVWEVTPGPGNG QA PK +T + VPPSLS   W
Sbjct: 319  MAADAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSSSW 378

Query: 61   AGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAA 120
             GFAPLAAYLFSWQEYL+SE KQG+K +DQ+ SDAI+L CSPVSNFSAYVSPEAAAQSAA
Sbjct: 379  TGFAPLAAYLFSWQEYLISEIKQGKKPSDQDSSDAISLSCSPVSNFSAYVSPEAAAQSAA 438

Query: 121  TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL 180
            TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL
Sbjct: 439  TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL 498

Query: 181  HQIFGNPTSSFGGQAPMQTVWVSKVDTSIP-TSNFKIHQLAAAGPTCDVWKTTDSGLEKS 239
            HQIFGNPTS+FGGQ P QTVWVS+VD SIP T +FK HQ+AAAGP+ D  K  DSG EK+
Sbjct: 499  HQIFGNPTSNFGGQVPTQTVWVSRVDMSIPPTKDFKNHQVAAAGPSVDAPKEPDSGDEKA 558

Query: 240  KIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAI 299
              V FDPFDLPSDIR+LARIVYSAHGGEIAIA LRGGVHIFSGP F+PV+NYQI+VGSAI
Sbjct: 559  NKVVFDPFDLPSDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQINVGSAI 618

Query: 300  AAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSL 359
            AAPAFS TSCCSASVWHD  KD  +LKIIRVLPPA+P +Q K + STWERAIAERFWWSL
Sbjct: 619  AAPAFSPTSCCSASVWHDAAKDCAMLKIIRVLPPALPRNQSKVDQSTWERAIAERFWWSL 678

Query: 360  LVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLE 419
            LV VDWWDAVGCTQSAAEDGIVSLNSVIAV+DADFHSLPS QHRQQYGP+LDRIKCRLLE
Sbjct: 679  LVGVDWWDAVGCTQSAAEDGIVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRIKCRLLE 738

Query: 420  GTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVE 479
            GTNAQEVRAMVLDMQARLLLDMLGKGIESAL+NPSALV +PW+  GET++GI+PEAMAV+
Sbjct: 739  GTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVFEPWRVDGETITGINPEAMAVD 798

Query: 480  PALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSAT 539
            PALV+SIQAYVDAVLDLASHFITRLRRYASFCRTLASHA +AGTGSNRN V SPTQ++++
Sbjct: 799  PALVSSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNNVTSPTQNASS 858

Query: 540  PAASQAGQ-------SGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFM 592
            PA  Q GQ       + TT+S+GS+ +QAW+QGAIAKISS+NDG SN T++PISG  +FM
Sbjct: 859  PATPQ-GQPTTTTTTTATTNSSGSSHVQAWMQGAIAKISSSNDG-SNSTASPISGSPTFM 916

Query: 593  PISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQRNNDANVQKP 652
            PISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCF  R ++ P      QRN D + QK 
Sbjct: 917  PISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFLQRSSRFP------QRNADVSSQKL 970

Query: 653  QVSAPGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQ 712
            Q  A  K+EE+NS   KPT A+ ++++ Q  R  Q   G KG++E  A   KMG GNAGQ
Sbjct: 971  QTGATSKLEEVNS--AKPTPALNRIEDAQGFRGAQLGTGVKGIDENSARTTKMGSGNAGQ 1028

Query: 713  GYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASL 772
            GYT+EEV+VLF ILMDLC+RT+ L+HPLP SQVGS NIQVRLHYIDGNYTVLPEVVEA+L
Sbjct: 1029 GYTYEEVRVLFHILMDLCKRTSGLAHPLPGSQVGSGNIQVRLHYIDGNYTVLPEVVEAAL 1088

Query: 773  GPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDDTPKLSNW 832
            GPHMQNMPRPRGADAAGLLLRELELHPP+EEWHRRN+FGGP S+PED+   DD  KLSN 
Sbjct: 1089 GPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNLFGGPGSEPEDMILTDDVSKLSNS 1148

Query: 833  VDSVDVNSSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAV 892
            +D  D N SG  D Y   H LWPRKRRMSERDAAFG NTSVGLGAYLGIMGSRRDVVTA 
Sbjct: 1149 LDLPDTNFSGICDGYNRVHSLWPRKRRMSERDAAFGSNTSVGLGAYLGIMGSRRDVVTAT 1208

Query: 893  WKTGLEGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPMCGGTWVRVV 951
            WKTGLEGVWYKCIRCLRQT+AFASPGAT  PN N+RE WW SRW + CPMCGGTWVRVV
Sbjct: 1209 WKTGLEGVWYKCIRCLRQTSAFASPGATKQPNPNERETWWTSRWVYCCPMCGGTWVRVV 1267

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255752|ref|NP_192401.5| sensitive to freezing 6 protein [Arabidopsis thaliana] gi|395406812|sp|F4JGZ1.1|MED16_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 16; AltName: Full=Protein SENSITIVE TO FREEZING 6 gi|332657041|gb|AEE82441.1| sensitive to freezing 6 protein [Arabidopsis thaliana]

 Score = 1471 bits (3809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 753/969 (77%), Positives = 826/969 (85%), Gaps = 27/969 (2%)

Query: 1    MAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKW 60
            MAAD IITDSGAMHVAGVPIVNPST+VVWEVTPGPGNG QA PK +T + VPPSLS   W
Sbjct: 319  MAADAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSSSW 378

Query: 61   AGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAA 120
             GFAPLAAYLFSWQEYL+SE KQG+K +DQ+ SDAI+L CSPVSNFSAYVSPEAAAQSAA
Sbjct: 379  TGFAPLAAYLFSWQEYLISEIKQGKKPSDQDSSDAISLSCSPVSNFSAYVSPEAAAQSAA 438

Query: 121  TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL 180
            TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL
Sbjct: 439  TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL 498

Query: 181  HQIFGNPTSSFGGQAPMQTVWVSKVDTSIP-TSNFKIHQLAAAGPTCDVWKTTDSGLEKS 239
            HQIFGNPTS+FGGQ P QTVWVS+VD SIP T +FK HQ+AAAGP+ D  K  DSG EK+
Sbjct: 499  HQIFGNPTSNFGGQVPTQTVWVSRVDMSIPPTKDFKNHQVAAAGPSVDAPKEPDSGDEKA 558

Query: 240  KIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAI 299
              V FDPFDLPSDIR+LARIVYSAHGGEIAIA LRGGVHIFSGP F+PV+NYQI+VGSAI
Sbjct: 559  NKVVFDPFDLPSDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQINVGSAI 618

Query: 300  AAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSL 359
            AAPAFS TSCCSASVWHD  KD  +LKIIRVLPPA+P +Q K + STWERAIAERFWWSL
Sbjct: 619  AAPAFSPTSCCSASVWHDAAKDCAMLKIIRVLPPALPRNQSKVDQSTWERAIAERFWWSL 678

Query: 360  LVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLE 419
            LV VDWWDAVGCTQSAAEDGIVSLNSVIAV+DADFHSLPS QHRQQYGP+LDRIKCRLLE
Sbjct: 679  LVGVDWWDAVGCTQSAAEDGIVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRIKCRLLE 738

Query: 420  GTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVE 479
            GTNAQEVRAMVLDMQARLLLDMLGKGIESAL+NPSALV +PW+  GET++GI+PEAMAV+
Sbjct: 739  GTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVFEPWRVDGETITGINPEAMAVD 798

Query: 480  PALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSAT 539
            PALV+SIQAYVDAVLDLASHFITRLRRYASFCRTLASHA +AGTGSNRN V SPTQ++++
Sbjct: 799  PALVSSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNNVTSPTQNASS 858

Query: 540  PAASQ----------AGQ-------SGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTS 582
            PA  Q           GQ       + TT+S+GS+ +QAW+QGAIAKISS+NDG SN T+
Sbjct: 859  PATPQVFPDKSLYLAVGQPTTTTTTTATTNSSGSSHVQAWMQGAIAKISSSNDG-SNSTA 917

Query: 583  NPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQ 642
            +PISG  +FMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCF  R ++ P      Q
Sbjct: 918  SPISGSPTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFLQRSSRFP------Q 971

Query: 643  RNNDANVQKPQVSAPGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGR 702
            RN D + QK Q  A  K+EE+NS   KPT A+ ++++ Q  R  Q   G KG++E  A  
Sbjct: 972  RNADVSSQKLQTGATSKLEEVNS--AKPTPALNRIEDAQGFRGAQLGTGVKGIDENSART 1029

Query: 703  PKMGFGNAGQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYT 762
             KMG GNAGQGYT+EEV+VLF ILMDLC+RT+ L+HPLP SQVGS NIQVRLHYIDGNYT
Sbjct: 1030 TKMGSGNAGQGYTYEEVRVLFHILMDLCKRTSGLAHPLPGSQVGSGNIQVRLHYIDGNYT 1089

Query: 763  VLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGP 822
            VLPEVVEA+LGPHMQNMPRPRGADAAGLLLRELELHPP+EEWHRRN+FGGP S+PED+  
Sbjct: 1090 VLPEVVEAALGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNLFGGPGSEPEDMIL 1149

Query: 823  VDDTPKLSNWVDSVDVNSSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIM 882
             DD  KLSN +D  D N SG  D Y   H LWPRKRRMSERDAAFG NTSVGLGAYLGIM
Sbjct: 1150 TDDVSKLSNSLDLPDTNFSGICDGYNRVHSLWPRKRRMSERDAAFGSNTSVGLGAYLGIM 1209

Query: 883  GSRRDVVTAVWKTGLEGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPM 942
            GSRRDVVTA WKTGLEGVWYKCIRCLRQT+AFASPGAT  PN N+RE WW SRW + CPM
Sbjct: 1210 GSRRDVVTATWKTGLEGVWYKCIRCLRQTSAFASPGATKQPNPNERETWWTSRWVYCCPM 1269

Query: 943  CGGTWVRVV 951
            CGGTWVRVV
Sbjct: 1270 CGGTWVRVV 1278

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809669|ref|XP_002872718.1| hypothetical protein ARALYDRAFT_490126 [Arabidopsis lyrata subsp. lyrata] gi|297318555|gb|EFH48977.1| hypothetical protein ARALYDRAFT_490126 [Arabidopsis lyrata subsp. lyrata]

 Score = 1392 bits (3602), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 714/914 (78%), Positives = 781/914 (85%), Gaps = 19/914 (2%)

Query: 1    MAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKW 60
            MAAD IITDSGAMHVAGVPIVNPST+VVWEVTPGPGNG QA PK +T + VPPSLS   W
Sbjct: 307  MAADAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSSSW 366

Query: 61   AGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAA 120
             GFAPLAAYLFSWQEYL+SE KQG+K TDQ+ SDAI+L CSPVSNFSAYVSPEAAAQSAA
Sbjct: 367  TGFAPLAAYLFSWQEYLISEIKQGKKPTDQDSSDAISLSCSPVSNFSAYVSPEAAAQSAA 426

Query: 121  TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL 180
            TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL
Sbjct: 427  TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL 486

Query: 181  HQIFGNPTSSFGGQAPMQTVWVSKVDTSIP-TSNFKIHQLAAAGPTCDVWKTTDSGLEKS 239
            HQIFGNPTS+FGGQ P QTVWVS+VD SIP T +FK HQ+AAAGP+ D  K  DSG EK+
Sbjct: 487  HQIFGNPTSNFGGQVPTQTVWVSRVDMSIPPTKDFKNHQVAAAGPSVDAPKEPDSGDEKA 546

Query: 240  KIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAI 299
              V FDPFDLPSDIR+LARIVYSAHGGEIAIA LRGGVHIFSGP F+PV+NYQI+VGSAI
Sbjct: 547  NKVVFDPFDLPSDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQINVGSAI 606

Query: 300  AAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSL 359
            AAPAFS TSCCSASVWHD  KD  +LKIIRVLPPA+P +Q K + STWERAI ERFWWSL
Sbjct: 607  AAPAFSPTSCCSASVWHDAAKDCAMLKIIRVLPPALPRNQSKVDQSTWERAIVERFWWSL 666

Query: 360  LVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLE 419
            LV VDWWDAVGCTQSAAEDGIVSLNSVIAV+DADFHSLPS QHRQQYGP+LDRIKCRLLE
Sbjct: 667  LVGVDWWDAVGCTQSAAEDGIVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRIKCRLLE 726

Query: 420  GTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVE 479
            GTNAQEVRAMVLDMQARLLLDMLGKGIESAL+NPSALV +PW+  GET++GI+PEAMAV+
Sbjct: 727  GTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVFEPWRVDGETITGINPEAMAVD 786

Query: 480  PALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSAT 539
            PALV+SIQAYVDAVLDLASHFITRLRRYASFCRTLASHA +AGTGSNRN+  SPTQ++++
Sbjct: 787  PALVSSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNIGTSPTQNASS 846

Query: 540  PAASQ----------AGQSGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTSNPISGPS 589
            PA  Q          AGQ  TT++  S   QAW+QGAIAKISS+NDGVSN T+NPISG  
Sbjct: 847  PATPQVFPDKSLYHAAGQPTTTTTNFSGSTQAWMQGAIAKISSSNDGVSNSTANPISGSP 906

Query: 590  SFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQRNNDANV 649
            +FMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCF  R ++ P      QRN D + 
Sbjct: 907  TFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFLQRSSRFP------QRNADVSS 960

Query: 650  QKPQVSAPGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGN 709
            QK Q  A  K+EE+NS   KPT A+ +++E Q  R  Q   G KG++E  A   KMG GN
Sbjct: 961  QKLQTGATSKLEEVNS--AKPTPALNRIEEAQGFRGAQLGAGVKGIDENSARTTKMGSGN 1018

Query: 710  AGQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVE 769
            AGQGYT+EEV+VLF ILMDLC+RT+ L+HPLP SQVGS NIQVRLHYIDGNYTVLPEVVE
Sbjct: 1019 AGQGYTYEEVRVLFHILMDLCKRTSGLAHPLPGSQVGSGNIQVRLHYIDGNYTVLPEVVE 1078

Query: 770  ASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPVDDTPKL 829
            A+LGPHMQNMPRPRGADAAGLLLRELELHPP+EEWHRRN+FGGP S+PED+   DD  KL
Sbjct: 1079 AALGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNLFGGPGSEPEDMVLTDDASKL 1138

Query: 830  SNWVDSVDVNSSGNHDVYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVV 889
            SN VD  D + SG  D Y   H +WPRKRRMSERDAAFG NTSVGLGAYLGIMGSRRDVV
Sbjct: 1139 SNSVDLPDTSFSGICDGYNRVHRIWPRKRRMSERDAAFGSNTSVGLGAYLGIMGSRRDVV 1198

Query: 890  TAVWKTGLEGVWYK 903
            TA WKTGL+GVWYK
Sbjct: 1199 TATWKTGLDGVWYK 1212

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	951
TAIR|locus:2135383	1278	SFR6 "AT4G04920" [Arabidopsis	0.991	0.737	0.727	0.0
DICTYBASE|DDB_G0279157	1284	med16 "putative mediator compl	0.126	0.093	0.283	9.7e-05

TAIR|locus:2135383 SFR6 "AT4G04920" [Arabidopsis thaliana (taxid:3702)]

 Score = 3584 (1266.7 bits), Expect = 0., P = 0.
 Identities = 704/968 (72%), Positives = 768/968 (79%)

Query:     1 MAADVIITDSGAMHVAGVPIVNPSTVVVWEVTPGPGNGFQAAPKTTTSNGVPPSLSPPKW 60
             MAAD IITDSGAMHVAGVPIVNPST+VVWEVTPGPGNG QA PK +T + VPPSLS   W
Sbjct:   319 MAADAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGLQATPKISTGSRVPPSLSSSSW 378

Query:    61 AGFAPLAAYLFSWQEYLLSEAKQGRKLTDQNFSDAITLHCSPVSNFSAYVSPEAAAQSAA 120
              GFAPLAAYLFSWQEYL+SE KQG+K +DQ+ SDAI+L CSPVSNFSAYVSPEAAAQSAA
Sbjct:   379 TGFAPLAAYLFSWQEYLISEIKQGKKPSDQDSSDAISLSCSPVSNFSAYVSPEAAAQSAA 438

Query:   121 TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL 180
             TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL
Sbjct:   439 TTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSVQPVVL 498

Query:   181 HQIFGNPTSSFGGQAPMQTVWVSKVDTSIP-TSNFKIHQLAAAGPTCDVWKTTDSGLEKS 239
             HQIFGNPTS+FGGQ P QTVWVS+VD SIP T +FK HQ+AAAGP+ D  K  DSG EK+
Sbjct:   499 HQIFGNPTSNFGGQVPTQTVWVSRVDMSIPPTKDFKNHQVAAAGPSVDAPKEPDSGDEKA 558

Query:   240 KIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAI 299
               V FDPFDLPSDIR+LARIVYSAHGGEIAIA LRGGVHIFSGP F+PV+NYQI+VGSAI
Sbjct:   559 NKVVFDPFDLPSDIRTLARIVYSAHGGEIAIAFLRGGVHIFSGPTFSPVENYQINVGSAI 618

Query:   300 AAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSL 359
             AAPAFS TSCCSASVWHD  KD  +LKIIRVLPPA+P +Q K + STWERAIAERFWWSL
Sbjct:   619 AAPAFSPTSCCSASVWHDAAKDCAMLKIIRVLPPALPRNQSKVDQSTWERAIAERFWWSL 678

Query:   360 LVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLE 419
             LV VDWWDAVGCTQSAAEDGIVSLNSVIAV+DADFHSLPS QHRQQYGP+LDRIKCRLLE
Sbjct:   679 LVGVDWWDAVGCTQSAAEDGIVSLNSVIAVMDADFHSLPSTQHRQQYGPNLDRIKCRLLE 738

Query:   420 GTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVE 479
             GTNAQEVRAMVLDMQARLLLDMLGKGIESAL+NPSALV +PW+  GET++GI+PEAMAV+
Sbjct:   739 GTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVFEPWRVDGETITGINPEAMAVD 798

Query:   480 PALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVXXXXXXXXX 539
             PALV+SIQAYVDAVLDLASHFITRLRRYASFCRTLASHA +AGTGSNRN V         
Sbjct:   799 PALVSSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAASAGTGSNRNNVTSPTQNASS 858

Query:   540 XXXXXX-------------XXXXXXXXXXXXXXXXWVQGAI-AKIS--STNDGVSNPTSN 583
                                                 VQ  +   I+  S+++  SN T++
Sbjct:   859 PATPQVFPDKSLYLAVGQPTTTTTTTATTNSSGSSHVQAWMQGAIAKISSSNDGSNSTAS 918

Query:   584 PISGPSSFMPISINTGTFPGTPAVRLIGDXXXXXXXXXXXXXXXXXXXXXXPRLLANAQR 643
             PISG  +FMPISINTGTFPGTPAVRLIGD                      P      QR
Sbjct:   919 PISGSPTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFLQRSSRFP------QR 972

Query:   644 NNDANVQKPQVSAPGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRP 703
             N D + QK Q  A  K+EE+NS   KPT A+ ++++ Q  R  Q   G KG++E  A   
Sbjct:   973 NADVSSQKLQTGATSKLEEVNSA--KPTPALNRIEDAQGFRGAQLGTGVKGIDENSARTT 1030

Query:   704 KMGFGNAGQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTV 763
             KMG GNAGQGYT+EEV+VLF ILMDLC+RT+ L+HPLP SQVGS NIQVRLHYIDGNYTV
Sbjct:  1031 KMGSGNAGQGYTYEEVRVLFHILMDLCKRTSGLAHPLPGSQVGSGNIQVRLHYIDGNYTV 1090

Query:   764 LPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGGPWSDPEDVGPV 823
             LPEVVEA+LGPHMQNMPRPRGADAAGLLLRELELHPP+EEWHRRN+FGGP S+PED+   
Sbjct:  1091 LPEVVEAALGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNLFGGPGSEPEDMILT 1150

Query:   824 DDTPKLXXXXXXXXXXXXXXXXXYYDSHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMG 883
             DD  KL                 Y   H LWPRKRRMSERDAAFG NTSVGLGAYLGIMG
Sbjct:  1151 DDVSKLSNSLDLPDTNFSGICDGYNRVHSLWPRKRRMSERDAAFGSNTSVGLGAYLGIMG 1210

Query:   884 SRRDVVTAVWKTGLEGVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPMC 943
             SRRDVVTA WKTGLEGVWYKCIRCLRQT+AFASPGAT  PN N+RE WW SRW + CPMC
Sbjct:  1211 SRRDVVTATWKTGLEGVWYKCIRCLRQTSAFASPGATKQPNPNERETWWTSRWVYCCPMC 1270

Query:   944 GGTWVRVV 951
             GGTWVRVV
Sbjct:  1271 GGTWVRVV 1278

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009631 "cold acclimation" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0032922 "circadian regulation of gene expression" evidence=IMP

GO:0048586 "regulation of long-day photoperiodism, flowering" evidence=IMP

GO:0007155 "cell adhesion" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0010104 "regulation of ethylene mediated signaling pathway" evidence=IMP

GO:1901672 "positive regulation of systemic acquired resistance" evidence=IMP

GO:2000022 "regulation of jasmonic acid mediated signaling pathway" evidence=IMP

DICTYBASE|DDB_G0279157 med16 "putative mediator complex subunit 16" [Dictyostelium discoideum (taxid:44689)]

 Score = 99 (39.9 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
 Identities = 36/127 (28%), Positives = 59/127 (46%)

Query:   343 NSSTWERAIAERFWWSLLVNVDWWDAVGCTQ--SAAEDGIVSLNSVIAVLDADFHSLPSI 400
             N     + +A+ F  S+L + DWWD +   +  S + D   + +  I  L +DF  LP +
Sbjct:   724 NQKVVSKWLAQLFQNSMLKSNDWWDILILLKIYSTSPDTRTTFHHTIIHLSSDFSCLP-L 782

Query:   401 QHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDP 460
               +Q Y    D IK  +    +  EV A V D QA+  +  L   ++S+  +P  + P  
Sbjct:   783 TFQQTYRHCFDAIKASIYRIVSGMEV-AFV-DSQAKSFIYYLCDTLKSSF-SPLLMQPSQ 839

Query:   461 WQASGET 467
              Q+ G T
Sbjct:   840 -QSDGTT 845

GO:0016592 "mediator complex" evidence=ISS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4JGZ1	MED16_ARATH	No assigned EC number	0.7770	0.9905	0.7370	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	951
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	95.61
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	90.03

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=95.61  E-value=0.093  Score=60.68  Aligned_cols=159  Identities=18%  Similarity=0.181  Sum_probs=100.9

Q ss_pred             eEEeeccCCCceeeeeccCCCCC--CCCCCCCceeEEEeeeecccCCCCccccccccCCCcccccccccccccccceeec
Q 002224          167 RVQRWESSVQPVVLHQIFGNPTS--SFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSF  244 (951)
Q Consensus       167 RvqrWESs~qpvvlhpifg~pts--~~gGqpp~qtvW~skvd~sIp~td~kn~q~~~~~~~~d~~~~s~~~~dk~k~~~f  244 (951)
                      -|.|||=.-++..|||+|..-.|  +.++++|+.+.|+..-|+.++..                            -+++
T Consensus       214 iI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~----------------------------V~si  265 (753)
T PF11635_consen  214 IIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKR----------------------------VVSI  265 (753)
T ss_pred             EEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCe----------------------------EEEE
Confidence            38999988888999999988763  45578999999998877765432                            2223


Q ss_pred             CCCCCccchhhHhhheecccCCeEEEEEeeCceeEeeCCCCCcccee-----ee-------eccccccC------CccCc
Q 002224          245 DPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNY-----QI-------SVGSAIAA------PAFSS  306 (951)
Q Consensus       245 dpfdlP~dvr~lAriVySahgGEiavAflrGgVHIFSGpnf~pVdny-----qi-------nVgsaIa~------PaFSs  306 (951)
                      ++..+               |+=++++|--|-||++.=-+|+++...     ..       .+|=..+.      -|||+
T Consensus       266 ~~~~~---------------~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP  330 (753)
T PF11635_consen  266 TSPEL---------------DIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP  330 (753)
T ss_pred             Eeccc---------------CcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc
Confidence            32222               347899999999999999999776554     11       13333432      26999


Q ss_pred             cccccceeeecCCCCceeEEEEeecCCCccccccccchhhHHHHHHHHHhhhhhccccchhhhcccc
Q 002224          307 TSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQ  373 (951)
Q Consensus       307 TsCCsASVWHDt~kd~~iLkIirVlPPa~p~~q~ka~ss~weraiaerfwwSllvgvdWWDavgctq  373 (951)
                      |+|..+-.  |...+..  |....+....-..|.-..+++ -.|++=-+=.-...+-|||+++-+++
T Consensus       331 t~c~~v~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~a~-~~al~~~~a~~~~~~~DDl~~l~~~~  392 (753)
T PF11635_consen  331 TMCSLVQI--DEDGKTK--KLLYMMRDSGSSPQDLYITAA-ALALRFSLACCSQTSSDDLLILIKTE  392 (753)
T ss_pred             ccceEEEE--ecCCCce--eeEEeecCCCCCccccchhHH-HHHHHHHHHHHHhcCcchHHHhhhhh
Confidence            99987765  2222211  555555554444443332221 12222223334567999999998776

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=90.03  E-value=0.15  Score=59.07  Aligned_cols=57  Identities=30%  Similarity=0.727  Sum_probs=39.1

Q ss_pred             ccceeEEeeecCCCc---ceeehhhhcccccccccCCCCCCCCCCCccchheehhcccCCCCCCCceE
Q 002224          884 SRRDVVTAVWKTGLE---GVWYKCIRCLRQTAAFASPGATNPPNQNDREAWWISRWAFGCPMCGGTWV  948 (951)
Q Consensus       884 SRRdVvTa~WKtgle---GvWyKciRC~RQTsAf~sp~a~~~p~qn~rE~wWisRW~~~CPMCGGtWv  948 (951)
                      ..=|+++-++=.+-+   +.|-+|.||+.-|.+.-..      .+...-. |.-+|.-.| .|||-|+
T Consensus       693 ~~vD~~rk~~l~~~~~~~~~~RrC~RC~~vs~~~~~~------~s~~~~~-w~~~~~R~C-~CGG~W~  752 (753)
T PF11635_consen  693 RYVDVLRKVHLGRSPTSTGKWRRCVRCGSVSEDEDPF------TSRATKR-WTMRWQRNC-ICGGMWV  752 (753)
T ss_pred             cccceeeeeeeeecccCCCceEEeccCCCcccccCCC------Ccchhhh-hhhheeeee-ccCCeeC
Confidence            556788877765554   9999999999554433222      1111122 999999888 6999996

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	951
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 9e-07
 Identities = 50/363 (13%), Positives = 110/363 (30%), Gaps = 98/363 (26%)

Query: 200 VWVSKV----D----TSIPTSNFKIHQLAAAGPTCDVW-KTTDSGLEK-------SKIVS 243
           V  +K     +      + T   ++    +A  T  +        L          K + 
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 244 FDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPA 303
             P DLP ++ +      S     IA   +R G+  +   N+  V+  +++  + I    
Sbjct: 313 CRPQDLPREVLTTNPRRLSI----IA-ESIRDGLATWD--NWKHVNCDKLT--TII---- 359

Query: 304 FSSTSCCSASVWH-DTNKDRTILKIIRVLPPAVP-SSQVKANSSTWERAIAERFWWSLLV 361
                   +S+   +  + R +   + V PP+    + +               W+ ++ 
Sbjct: 360 -------ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-----------LSLIWFDVIK 401

Query: 362 NVDWWDAVGC-TQSAAE----DGIVSLNSVIAVLDADFHSLPSIQHRQ---QYG------ 407
           +            S  E    +  +S+ S+   L     +  ++ HR     Y       
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-HRSIVDHYNIPKTFD 460

Query: 408 ------PSLDR-----IKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSAL 456
                 P LD+     I   L    + + +      +   + LD   + +E  + + S  
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERM-----TLFRMVFLDF--RFLEQKIRHDST- 512

Query: 457 VPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLAS 516
               W ASG  L+             +  ++ Y   + D    +   +     F   +  
Sbjct: 513 ---AWNASGSILN------------TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557

Query: 517 HAV 519
           + +
Sbjct: 558 NLI 560

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00