Citrus Sinensis ID: 002242

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------95
MPQSEPSAGAGEKCDANKALLVPEVNTSAGAGKKNDSDKVLPLQLAETFACSGESGNQFKIDNNASDMEVLSTSSYPKTEKNRIVRSLVNDQDKVGRREEKFKKVADVNDAVELSISASEALVIHELSNNEPDSEDLLTTIVLEAALQVKQARLENQEDTSHYPNKEIDETHLVSELDDLTMASACEDVGLPSAGSDENFVSGSESFLIKCTPLSENYYESNDNGFKHVECLAHKKKLPADPALNLNGSYMEGKIDPMLHQSTQETSHVLAAAQPEASTNSIYAWNSNNAVGKEEICCSVVDRFRSRWFGGWTGKEVDVPIQLEQSNNKGIPKFYVNETSSLSESADVAPDENSFVQKHETGSKIASQSSIPFEGVNNKADEEISFCQDVISSAQSFVDPLCSFVPCSVSAVDASSPQTINVAAAQKQLLEVENLQWTSDFNAEFINRDRQDVSTFSVEGFENPVKRQLTLLKPYSTLSPINDPKLEKRSCFRNHLVPSECHEEIISLEQNIGCIWSWDKRYCKGLLSFGSASKFAAGRENEETYKTTVTGNPYAVATNCTENNDKLVSHGAGLLEPLKESRLPPFPNRGTCRSHASKLIGDVNNSFGKTNPDEAGVQETVVMLHNLSEERNNYLETQVPIRKRIRLSEVEVDLRQNRDIEKLQSSHKFHSVTRTSEMSKNSNACRDSQLQYVKRCSTTRRKYVKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFILKAKWLTDSVAAGSTVSPAKYMILSSQADLKRTGITEPICRDNHKYIFGRVGIMLHGKPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIKSLHIGMLLPQTQDKHIPSPTVNVPEFRISIDWSEEI
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccHHHccccccccccccccccEEEEEccccccccHHHHcHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHcccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccEEEEEEccccHHHHHHHHHHHHHcccEEEEcccccccccccccccccccccEEEcccccHHHHHHHHHHcccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHccccEEEcHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHccccEEcHHHHHHHHHHcccccccccccccccccccccccccccccccc
ccccccccccccccccccccccccEEccccccccccccccEEccccccccccccccccEcccccHHHHHHHHHccccHHHHHcccccccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcHHHHHHHHHHcccccccccccccccccEEEEEEcccccccccccccccccccHHHHcccccccccccccccHHHHHccHcccccccccccHHHHcccccccccccccccccccccccHHHHHHHHccccccccccccEccccEEEcccccccccccccccccEEcccccccccccccccccccHHHHHHccccccccccccccHHHHHHHHEEccccccccccccccccEEEccccccHHHHHHccccccccEEccccccccccccccccccccccEEEcccccccEEEEEEEEccHHEEccccccEEEEEcccccccccccccccEEEcccccccEcccccccccccEEcccccHccccccccccccccEccccEEEEEEccccccccccccccccccccccccccccccccccccHHHHccccccccccccccHHHHHHHHHcHHHcHHHHcccHccccccEEEEEcccEEEEccccccccccccHccccccEEEcccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccEEEccccccccccccccccccccccEEEcccccHHHHHHHHHHcccHHccHHHHHHHHHcccccccccEEEEccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHccHHHHHHHHHHHHcHccccccEEEEEEccHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccccccccccEEcccccccccccccc
mpqsepsagagekcdankallvpevntsagagkkndsdkvlpLQLAETFacsgesgnqfkidnnasdmevlstssypkteknrIVRSLVNdqdkvgrreekfkkvadvNDAVELSISASEALVIHElsnnepdseDLLTTIVLEAALQVKQARLenqedtshypnkeidethlvselDDLTMAsacedvglpsagsdenfvsgsesflikctplsenyyesndngFKHVECLahkkklpadpalnlngsymegkidpmlhqstqETSHVLAAaqpeastnsiyawnsnnavgkeeICCSVVDRfrsrwfggwtgkevdvpiqleqsnnkgipkfyvnetsslsesadvapdensfvqkhetgskiasqssipfegvnnkadEEISFCQDVISSAQsfvdplcsfvpcsvsavdasspqTINVAAAQKQLLEVENLQWTSDFNAEFinrdrqdvstfsvegfenpvkrqltllkpystlspindpklekrscfrnhlvpsecHEEIISLEQNIGCIWSWDKRYCKgllsfgsaskfaagreneetykttvtgnpyavatnctenndklvshgaglleplkesrlppfpnrgtcrshaSKLIGdvnnsfgktnpdeagvQETVVMLHNLSEERNNYLETQVPIRKRIRLSEVEVDLRQNrdieklqsshkfhsvtrtsemsknsnacrdSQLQYVKRCSTTRRKYVKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGglvlldipppnsqgkrcsrshsqqlpvvicpkklkttkflyGCAVNAFILKAKwltdsvaagstvspakYMILSSQadlkrtgitepicrdnhkyifgrvgimlhgkpsfCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIKSLHigmllpqtqdkhipsptvnvpefrisidwseei
mpqsepsagagekcdankALLVPEVNtsagagkkndsdKVLPLQLAETFACSGESGNQFKIDNNASDMEVLSTssypkteknrivrslvndqdkvgrreekfkkvadvndavELSISASEALVIHELSNNEPDSEDLLTTIVLEAALQVKQARLenqedtshypnkeiDETHLVSELDDLTMASACEDVGLPSAGSDENFVSGSESFLIKCTPLSENYYESNDNGFKHVECLAHKKKLPADPALNLNGSYMEGKIDPMLHQSTQETSHVLAAAQPEASTNSIYAWNSNNAVGKEEICCSVVDRFRSRWFGGWTGKEVdvpiqleqsnnkgiPKFYVNETSSLSESADVAPDENSFVQKHEtgskiasqssipfEGVNNKADEEISFCQDVISSAQSFVDPLCSFVPCSVSAVDASSPQTINVAAAQKQLLEVENLQWTSDFNAEFINRDRQDVSTfsvegfenpvkrqltllkpystlspindpkleKRSCFRNHLVPSECHEEIISLEQNIGCIWSWDKRYCKGLLSFGSASKFAAGRENeetykttvtgnpYAVATNCTENNDKLVSHGAGLLEPLKESRLPPFPNRGTCRSHASKLIGDVNNSFGKTNPDEAGVQETVVMLHNLSeernnyletqvpirkrirlsevevdlrqnrdieklqsshkfhsvtrtsemsknsnacrdsqlqyvkrcsttRRKYVKRLIFQGIKFLltgfssqkeKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFILKAKWLTDSVAAGSTVSPAKYMILssqadlkrtgitepicrDNHKYIFGRVGIMLHGKPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIKSLHIGMLLPQTqdkhipsptvnvpefrisidwseei
MPQSEPSAGAGEKCDANKALLVPEVNTSAGAGKKNDSDKVLPLQLAETFACSGESGNQFKIDNNASDMEVLSTSSYPKTEKNRIVRSLVNDQDKVGRREEKFKKVADVNDAVELSISASEALVIHELSNNEPDSEDLLTTIVLEAALQVKQARLENQEDTSHYPNKEIDETHLVSELDDLTMASACEDVGLPSAGSDENFVSGSESFLIKCTPLSENYYESNDNGFKHVECLAHKKKLPADPALNLNGSYMEGKIDPMLHQSTQETSHVLAAAQPEASTNSIYAWNSNNAVGKEEICCSVVDRFRSRWFGGWTGKEVDVPIQLEQSNNKGIPKFYVNETSSLSESADVAPDENSFVQKHETGSKIASQSSIPFEGVNNKADEEISFCQDVISSAQSFVDPLCSFVPCSVSAVDASSPQTINVAAAQKQLLEVENLQWTSDFNAEFINRDRQDVSTFSVEGFENPVKRQLTLLKPYSTLSPINDPKLEKRSCFRNHLVPSECHEEIISLEQNIGCIWSWDKRYCKGLLSFGSASKFAAGRENEETYKTTVTGNPYAVATNCTENNDKLVSHGAGLLEPLKESRLPPFPNRGTCRSHASKLIGDVNNSFGKTNPDEAGVQETVVMLHNLSEERNNYLETQVPIRKRIRLSEVEVDLRQNRDIEKLQSSHKFHSVTRTSEMSKNSNACRDSQLQYVKRCSTTRRKYVKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFILKAKWLTDSVAAGSTVSPAKYMILSSQADLKRTGITEPICRDNHKYIFGRVGIMLHGKPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIKSLHIGMLLPQTQDKHIPSPTVNVPEFRISIDWSEEI
***********************************************************************************************************VNDAVELSISASEALVIH***********LLTTIVLEAALQV******************************************************SESFLIKCTPLSENYYESNDNGFKHVECLAHKKK******************************************NSIYAWNSNNAVGKEEICCSVVDRFRSRWFGGWTGKEVDVPIQLE******IPKFY***********************************************EISFCQDVISSAQSFVDPLCSFVPCSVSAVDASSPQTINVAAAQKQLLEVENLQWTSDFNAEFINRDRQDVSTFSVEGFENPVKRQLTLLKPYSTLSPINDPKLEKRSCFRNHLVPSECHEEIISLEQNIGCIWSWDKRYCKGLLSFGSASKFAAGR**EETYKTTVTGNPYAVATNCTENNDKLVS**************************************************TVVMLHNLS**RNNYLETQVPIRKRIRLS*****************************************LQYVKRCSTTRRKYVKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDI*****************LPVVICPKKLKTTKFLYGCAVNAFILKAKWLTDSVAAGSTVSPAKYMILSSQADLKRTGITEPICRDNHKYIFGRVGIMLHGKPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIKSLHIGMLLPQTQD**I****VNVPEFRISI******
******************************************LQLAETF***************************************************KFKKVADVNDAVELSISASEALVIHELSNN**********IVLEAALQVKQA****************DETHLVSELDDLTMASACEDVGLPSA***********SFLI***************************************S******************************************************FRSRWFGGWTG*********************************************************************************SFVDPLCSFVP**************************************************************************************************************************************************************************************************************************************************************************************************************FQGIKFLLTGF************QKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFILKAKWLTDSVAAGSTVSPAKYMILSSQ**************DNHKYIFGRVGIMLHGKPSFCTKFAVIVKHGGGQVFKTLHWL*****TQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIKSLHIGMLLPQ**************************
************KCDANKALLVPEVNTSAGAGKKNDSDKVLPLQLAETFACSGESGNQFKIDNNASDMEVLSTSSYPKTEKNRIVRSLVNDQDKVGRREEKFKKVADVNDAVELSISASEALVIHELSNNEPDSEDLLTTIVLEAALQVKQARLENQEDTSHYPNKEIDETHLVSELDDLTMASACEDVGLPSAGSDENFVSGSESFLIKCTPLSENYYESNDNGFKHVECLAHKKKLPADPALNLNGSYMEGKIDPMLHQSTQETSHVLAAAQPEASTNSIYAWNSNNAVGKEEICCSVVDRFRSRWFGGWTGKEVDVPIQLEQSNNKGIPKFYVNETS*************************ASQSSIPFEGVNNKADEEISFCQDVISSAQSFVDPLCSFVPCSVSAVDASSPQTINVAAAQKQLLEVENLQWTSDFNAEFINRDRQDVSTFSVEGFENPVKRQLTLLKPYSTLSPINDPKLEKRSCFRNHLVPSECHEEIISLEQNIGCIWSWDKRYCKGLLSFGSASKFAAGRENEETYKTTVTGNPYAVATNCTENNDKLVSHGAGLLEPLKESRLPPFPNRGTCRSHASKLIGDVNNSFGKTNPDEAGVQETVVMLHNLSEERNNYLETQVPIRKRIRLSEVEVDLRQNRDIEKLQS*******************CRDSQLQYVKRCSTTRRKYVKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPP************QQLPVVICPKKLKTTKFLYGCAVNAFILKAKWLTDSVAAGSTVSPAKYMILSSQADLKRTGITEPICRDNHKYIFGRVGIMLHGKPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIKSLHIGMLLPQTQDKHIPSPTVNVPEFRISIDWSEEI
*******************LL*****T******************AETFACSGESGNQFKIDNNASDMEVLSTSSYPKT*****VRSLVNDQDKVGRREEKFKKVADVNDAVELSISASEALVIHELSNNEPDSEDLLTTIVLEAALQVKQARLENQEDT***PNKEIDETHLVSELDDLTMASACEDVGLPSAGSDENFVSGSESFLIKCTPLSENYYESNDNGFKHVECLAHKKKLPADPALNLNGSYMEGKIDPMLH*********************IY*********KEEICCSVVDRFRSRWFGGWTGKEVDVPIQLEQSNNKGIPKFYVNETSSLSESADVAPDENSFV****************FEGVNNKADEEISFCQDVISSAQSFVDPLCSFVPCSVSAVDASSPQTINVAAAQKQLLEVENLQWTSDFNAEFINRDRQDVSTFSVEGFENPVKRQLTLLKPYSTLSPINDPKLEKRSCFRNHLVPSECHEEIISLEQNIGCIWSWDKRYCKGLLSFGSASKFAAGRENEETYKTTVTGNPYAVATNCTENND*******GLL*****SRLPPFPNRGTCRSHASKLIGDVNNSFGKTNPDEAGVQETVVMLHNLSEERNNYLETQVPIRKRIRLSEVEVDLRQN**************VTR*********ACRDSQLQYVKRCSTTRRKYVKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQ*KRC*RSHSQQLPVVICPKKLKTTKFLYGCAVNAFILKAKWLTDSVAAGSTVSPAKYMILSSQADLKRTGITEPICRDNHKYIFGRVGIMLHGKPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIKSLHIGMLLPQTQDKHIPSPTVNVPEF**********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPQSEPSAGAGEKCDANKALLVPEVNTSAGAGKKNDSDKVLPLQLAETFACSGESGNQFKIDNNASDMEVLSTSSYPKTEKNRIVRSLVNDQDKVGRREEKFKKVADVNDAVELSISASEALVIHELSNNEPDSEDLLTTIVLEAALQVKQARLENQEDTSHYPNKEIDETHLVSELDDLTMASACEDVGLPSAGSDENFVSGSESFLIKCTPLSENYYESNDNGFKHVECLAHKKKLPADPALNLNGSYMEGKIDPMLHQSTQETSHVLAAAQPEASTNSIYAWNSNNAVGKEEICCSVVDRFRSRWFGGWTGKEVDVPIQLEQSNNKGIPKFYVNETSSLSESADVAPDENSFVQKHETGSKIASQSSIPFEGVNNKADEEISFCQDVISSAQSFVDPLCSFVPCSVSAVDASSPQTINVAAAQKQLLEVENLQWTSDFNAEFINRDRQDVSTFSVEGFENPVKRQLTLLKPYSTLSPINDPKLEKRSCFRNHLVPSECHEEIISLEQNIGCIWSWDKRYCKGLLSFGSASKFAAGRENEETYKTTVTGNPYAVATNCTENNDKLVSHGAGLLEPLKESRLPPFPNRGTCRSHASKLIGDVNNSFGKTNPDEAGVQETVVMLHNLSEERNNYLETQVPIRKRIRLSEVEVDLRQNRDIEKLQSSHKFHSVTRTSEMSKNSNACRDSQLQYVKRCSTTRRKYVKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFILKAKWLTDSVAAGSTVSPAKYMILSSQADLKRTGITEPICRDNHKYIFGRVGIMLHGKPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIKSLHIGMLLPQTQDKHIPSPTVNVPEFRISIDWSEEI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query948
224075882 1122 predicted protein [Populus trichocarpa] 0.951 0.803 0.437 0.0
255569143991 conserved hypothetical protein [Ricinus 0.869 0.831 0.448 1e-177
449435496 1330 PREDICTED: uncharacterized protein LOC10 0.854 0.609 0.347 1e-116
357456285 1201 hypothetical protein MTR_3g013490 [Medic 0.695 0.548 0.361 1e-101
296087815693 unnamed protein product [Vitis vinifera] 0.413 0.565 0.465 2e-90
218193963883 hypothetical protein OsI_14021 [Oryza sa 0.355 0.381 0.355 2e-51
32129326850 unknown protein [Oryza sativa Japonica G 0.356 0.397 0.348 8e-51
115456137883 Os03g0811200 [Oryza sativa Japonica Grou 0.356 0.382 0.348 1e-50
357114949931 PREDICTED: uncharacterized protein LOC10 0.261 0.266 0.421 1e-49
356539174186 PREDICTED: uncharacterized protein LOC10 0.191 0.978 0.551 5e-47
>gi|224075882|ref|XP_002304811.1| predicted protein [Populus trichocarpa] gi|222842243|gb|EEE79790.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/966 (43%), Positives = 557/966 (57%), Gaps = 64/966 (6%)

Query: 15   DANKALLVPEVNTSAGAGK----KNDS--DKVLPLQLA----------ETFACSGESGNQ 58
            D++KAL + +V TS G G+    K DS    V+P   +            F  + +SG Q
Sbjct: 119  DSSKALPLKQVETSGGVGEAIQLKMDSVGGGVIPSLTSAPISVENADPRDFTSNSDSGKQ 178

Query: 59   F---KIDNNASDMEVLSTSSYPKTEKNRIVRSLVNDQDKVGRREEKFK----KVADVNDA 111
            +   K  N +  M      S P T +N   +S  N +D+  + EEK      K AD++DA
Sbjct: 179  YEERKGQNASCMMHDSRLISIPTTAENAGPQSATNYKDRGCQHEEKCNVICIKDADISDA 238

Query: 112  VELSISASEALVIHELSNNEPDSEDLLTTIVLEAALQVKQARLENQEDTSHYPNKEIDET 171
            VELSISASEALVIH+       S+ L    +LEAAL +KQARLE+ ED    P+ E DE 
Sbjct: 239  VELSISASEALVIHKFVKTGSSSDALTKQAILEAALHIKQARLESSEDAFGCPSDEADEI 298

Query: 172  HLVSELDDLTMASACEDVGLPSAGSDENFVSGSESFLIKCTPLSENYYESNDNGFKHVEC 231
              +S+LDD  M  A  DVGL  +   +  +   +   ++ TP+ EN++   + G +HV+ 
Sbjct: 299  DFLSDLDDSIMEDAYLDVGLSFSAHGDEHLHDLDVSQVEETPVLENHHL--EKGSEHVQL 356

Query: 232  LAHKKKLPADPALNLNGSYMEGKIDPMLHQSTQETSHVLAAAQ-----------PEASTN 280
            L  +     D  L  N S      D +L Q  ++ S   + A+           P    N
Sbjct: 357  LPQQNNADDDSDLGSNPSDAACLGDHILTQPAEKLSESSSGAKFVFTKDGNLGLPPVDVN 416

Query: 281  SIYAWNSNNAVGKEEICCSVVDRFRSRWFGGWTGKEVDVPIQLEQSNNKGIPKFYVNETS 340
            S +A  +  A G  E+   + DRF+SRWFGGW  +E D   +L+Q++ K IPKF+V ETS
Sbjct: 417  SFHACRAEKAEGAREVHYLIADRFKSRWFGGWALEEGDASAKLKQNSPKSIPKFFVGETS 476

Query: 341  SLSESADVAPDENSFVQKHETGSKIASQSSIPFEGVNNKADEEISFCQDVISSAQSFVDP 400
             LSESADVAPDENSFVQKHET S I SQSSIPFE +++K        Q+VISS  S VDP
Sbjct: 477  FLSESADVAPDENSFVQKHETRSNIGSQSSIPFEALHDK--------QEVISSDLSLVDP 528

Query: 401  LCSFVPCSVSAVDASSPQTINVAAAQKQ-------LLEVENLQWTSDFNAEFINRDRQDV 453
            LCS VPCS+S  +A SP   N      +          +EN Q TS   AE +  D Q V
Sbjct: 529  LCSVVPCSISLENAISPSVQNNRKVDAENCFNPNTDTGMENFQKTSHLKAEPVFMDSQTV 588

Query: 454  STFSVEGFENPVKRQLTLLKPYSTLSPINDPKLEKRSCFRNHLVPSECHEEIISLEQNIG 513
                 +    PV+R++  L+ YSTLSP  D  LE+     N    S     +++  Q +G
Sbjct: 589  PIIMGQCSNAPVRRRVASLRTYSTLSPNCDAVLEREGPCHNGRYSSGHVRNLLASHQEMG 648

Query: 514  CIWSWDKRYCKGLLSFGSASKFAAGRENEETYKTTVTGNPYAVATNCTENNDKLVSHGAG 573
            CI   D+R  KG+L F S  +   GR+NEE     V  N  A  T    ++D+       
Sbjct: 649  CIRPSDQRNSKGVLPFKSVFESTDGRDNEEN--QDVVRNLVAEITCQKRSHDQPTKDRTE 706

Query: 574  L-LEPLKESRLPPFPNRGT-CRSHASKLIGDVNNSFGKTNPDEAGVQETVVMLH------ 625
            + ++P  + R P   NR T CR  AS+L    +N  G+ +P++A  QE ++ LH      
Sbjct: 707  MKVKPSVQRRSPLILNRRTRCRPQASELF--THNLTGEISPEQAVGQENIIKLHPSKNAE 764

Query: 626  NLSEERNNYLETQVPIRKRIRLSEVEVDLRQNRDIEKLQSSHKFHSVTRTSEMSKNSNAC 685
             +  +  N    + P+RKR+  SEVEVDL QN+D+ K Q+ H+  S  R  +   N N C
Sbjct: 765  KIKLKWENSFGARNPVRKRVCFSEVEVDLYQNKDLRKPQTLHRNGSTIRADKKKNNGNTC 824

Query: 686  RDSQLQYVKRCSTTRRKYVKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPP- 744
             + Q Q VK   T + K  KRLIF G++FLLTGFS +KEKEI  +IQ YGG+++LDIPP 
Sbjct: 825  SEVQPQDVKSSFTCQIKDAKRLIFHGLEFLLTGFSHKKEKEIIEIIQIYGGMIVLDIPPV 884

Query: 745  PNSQGKRCSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFILKAKWLTDSVAAGSTVSPAK 804
            PNS+ KR SRS+ Q LPVVIC KKL+TTKFLYGCA+NA ILK KWLTDSVAAGS VSP K
Sbjct: 885  PNSRLKRVSRSNLQHLPVVICSKKLQTTKFLYGCAMNALILKLKWLTDSVAAGSVVSPDK 944

Query: 805  YMILSSQADLKRTGITEPICRDNHKYIFGRVGIMLHGKPSFCTKFAVIVKHGGGQVFKTL 864
            YMI+S+QA LK T I + +C ++ K+IF RVGI+LHGK  FCTK  VIVKH  GQVFKTL
Sbjct: 945  YMIISNQAYLKCTRIGKSVCCNHRKHIFDRVGIVLHGKHRFCTKLTVIVKHAHGQVFKTL 1004

Query: 865  HWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIKSLHIGMLLPQTQ 924
              LV SL+++K  +G IV ENE R  RHLR+CA E+KI M+PASWI KSLH+G LLP  +
Sbjct: 1005 QSLVESLDSEKISMGAIVTENETRELRHLRYCASERKIPMMPASWIAKSLHLGKLLPFIE 1064

Query: 925  DKHIPS 930
            D+  PS
Sbjct: 1065 DEATPS 1070

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255569143|ref|XP_002525540.1| conserved hypothetical protein [Ricinus communis] gi|223535119|gb|EEF36799.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449435496|ref|XP_004135531.1| PREDICTED: uncharacterized protein LOC101203785 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357456285|ref|XP_003598423.1| hypothetical protein MTR_3g013490 [Medicago truncatula] gi|355487471|gb|AES68674.1| hypothetical protein MTR_3g013490 [Medicago truncatula] Back     alignment and taxonomy information
>gi|296087815|emb|CBI35071.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|218193963|gb|EEC76390.1| hypothetical protein OsI_14021 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|32129326|gb|AAP73853.1| unknown protein [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|115456137|ref|NP_001051669.1| Os03g0811200 [Oryza sativa Japonica Group] gi|50540742|gb|AAT77898.1| expressed protein [Oryza sativa Japonica Group] gi|108711696|gb|ABF99491.1| BRCA1 C Terminus domain containing protein, expressed [Oryza sativa Japonica Group] gi|113550140|dbj|BAF13583.1| Os03g0811200 [Oryza sativa Japonica Group] gi|222626025|gb|EEE60157.1| hypothetical protein OsJ_13067 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357114949|ref|XP_003559256.1| PREDICTED: uncharacterized protein LOC100844410 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|356539174|ref|XP_003538075.1| PREDICTED: uncharacterized protein LOC100808072 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query948
pfam0053377 pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain 3e-07
smart0029278 smart00292, BRCT, breast cancer carboxy-terminal d 4e-04
>gnl|CDD|215978 pfam00533, BRCT, BRCA1 C Terminus (BRCT) domain Back     alignment and domain information 
 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 14/91 (15%)

Query: 704 VKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRSHSQQLPVV 763
            K  +F+G  F++TG  S + +E+E LI+K GG              + + S S++   V
Sbjct: 1   NKEKLFKGKTFVITGLDSLEREELEELIEKLGG--------------KVTDSLSKKTTHV 46

Query: 764 ICPKKLKTTKFLYGCAVNAFILKAKWLTDSV 794
           I  +   T K L   A+   I+  +WL D +
Sbjct: 47  IVGENAGTLKLLKAIALGIPIVTEEWLLDCI 77

The BRCT domain is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage. The BRCT domain of XRCC1 forms a homodimer in the crystal structure. This suggests that pairs of BRCT domains associate as homo- or heterodimers. BRCT domains are often found as tandem-repeat pairs. Structures of the BRCA1 BRCT domains revealed a basis for a widely utilised head-to-tail BRCT-BRCT oligomerisation mode. This conserved tandem BRCT architecture facilitates formation of the canonical BRCT phospho-peptide interaction cleft at a groove between the BRCT domains. Disease associated missense and nonsense mutations in the BRCA1 BRCT domains disrupt peptide binding by directly occluding this peptide binding groove, or by disrupting key conserved BRCT core folding determinants. Length = 77
>gnl|CDD|214602 smart00292, BRCT, breast cancer carboxy-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 948
KOG35481176 consensus DNA damage checkpoint protein RHP9/CRB2/ 99.81
KOG4362684 consensus Transcriptional regulator BRCA1 [Replica 99.42
PF0053378 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP 99.3
KOG2043896 consensus Signaling protein SWIFT and related BRCT 99.05
smart0029280 BRCT breast cancer carboxy-terminal domain. 98.94
cd0002772 BRCT Breast Cancer Suppressor Protein (BRCA1), car 98.83
PF0053378 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP 98.58
smart0029280 BRCT breast cancer carboxy-terminal domain. 98.51
PF1273863 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2W 98.35
cd0002772 BRCT Breast Cancer Suppressor Protein (BRCA1), car 98.33
KOG1929 811 consensus Nucleotide excision repair factor NEF2, 98.3
KOG1929 811 consensus Nucleotide excision repair factor NEF2, 98.14
PLN03122 815 Poly [ADP-ribose] polymerase; Provisional 97.73
KOG0966881 consensus ATP-dependent DNA ligase IV [Replication 97.59
KOG3524 850 consensus Predicted guanine nucleotide exchange fa 97.54
PLN03123 981 poly [ADP-ribose] polymerase; Provisional 97.42
KOG3226508 consensus DNA repair protein [Replication, recombi 97.13
KOG2481570 consensus Protein required for normal rRNA process 96.91
PLN03122 815 Poly [ADP-ribose] polymerase; Provisional 96.49
PF1273863 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2W 96.46
PLN03123 981 poly [ADP-ribose] polymerase; Provisional 96.04
COG5163591 NOP7 Protein required for biogenesis of the 60S ri 95.47
KOG3548 1176 consensus DNA damage checkpoint protein RHP9/CRB2/ 94.5
PRK06063313 DNA polymerase III subunit epsilon; Provisional 94.43
PRK14350669 ligA NAD-dependent DNA ligase LigA; Provisional 94.28
KOG4362 684 consensus Transcriptional regulator BRCA1 [Replica 94.18
PRK14350669 ligA NAD-dependent DNA ligase LigA; Provisional 94.09
PRK07956665 ligA NAD-dependent DNA ligase LigA; Validated 93.45
PRK06063313 DNA polymerase III subunit epsilon; Provisional 93.35
KOG2481 570 consensus Protein required for normal rRNA process 93.33
PRK14351689 ligA NAD-dependent DNA ligase LigA; Provisional 93.17
COG5163 591 NOP7 Protein required for biogenesis of the 60S ri 92.25
TIGR00575652 dnlj DNA ligase, NAD-dependent. The member of this 91.73
COG0272667 Lig NAD-dependent DNA ligase (contains BRCT domain 91.63
PRK07956665 ligA NAD-dependent DNA ligase LigA; Validated 91.56
PRK06195309 DNA polymerase III subunit epsilon; Validated 90.75
PRK14351689 ligA NAD-dependent DNA ligase LigA; Provisional 90.45
PRK06195309 DNA polymerase III subunit epsilon; Validated 89.64
COG0272667 Lig NAD-dependent DNA ligase (contains BRCT domain 89.37
KOG0966 881 consensus ATP-dependent DNA ligase IV [Replication 87.82
TIGR00575652 dnlj DNA ligase, NAD-dependent. The member of this 87.59
KOG3226508 consensus DNA repair protein [Replication, recombi 84.78
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair] Back     alignment and domain information 
Probab=99.81  E-value=5.7e-20  Score=213.70  Aligned_cols=290  Identities=16%  Similarity=0.187  Sum_probs=186.1

Q ss_pred             hhhccccccccccccceechhhhhhhhccchhhhhcccc--------cccc--eeccccccCCccccchhhhHhhhcccc
Q 002242          630 ERNNYLETQVPIRKRIRLSEVEVDLRQNRDIEKLQSSHK--------FHSV--TRTSEMSKNSNACRDSQLQYVKRCSTT  699 (948)
Q Consensus       630 e~~n~~~~~~~~RKrv~fse~~~~~~q~k~~~k~qt~~~--------~~~~--~~~~~~~~~s~~~~~s~~~~~~~~~~~  699 (948)
                      +|--++...+++|-+.--+.+-.=.--+++ ||.+|.+-        ++++  ..+++++|+-.+|-.+..--+...+-+
T Consensus       841 k~day~~s~~~~a~~~s~snvpti~eatra-rK~it~~~e~sp~~~rks~tvk~~v~~~gr~asp~eegd~sll~s~lEe  919 (1176)
T KOG3548|consen  841 KWDAYVKSKDQSATAISTSNVPTISEATRA-RKPITVSNEASPKDGRKSKTVKLLVSSRGRSASPAEEGDESLLPSMLEE  919 (1176)
T ss_pred             hhhhhhccccccccceeecccccccccccc-ccccccccccccccccccccccccccccccccChhhccCcccccccchh
Confidence            333344444444444433333221122233 67766543        3333  234555666667766544433333222


Q ss_pred             cccccccccccceEEEEcCCCchhHHHHHHHHHHhCCEeecCCC--CCCCc----CCccccCC------CCCCcEEECCC
Q 002242          700 RRKYVKRLIFQGIKFLLTGFSSQKEKEIEVLIQKYGGLVLLDIP--PPNSQ----GKRCSRSH------SQQLPVVICPK  767 (948)
Q Consensus       700 ~~~~~Ks~IF~GLvFLLTGfss~keKELtkLIe~LGG~V~sDip--~pldk----~kR~aef~------st~~~VVI~~k  767 (948)
                      +   -...||-|.+|||||... .+++...-++.+||.|+..+=  +.++.    +..+-.|+      .+--..||++.
T Consensus       920 ~---~gkniFd~cvF~lTsa~~-sd~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdt  995 (1176)
T KOG3548|consen  920 A---IGKNIFDGCVFMLTSANR-SDSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISDT  995 (1176)
T ss_pred             h---hCcchhcceeEEEecccc-chhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeehh
Confidence            2   236899999999999986 355688888889999998643  12221    22222222      22235789999


Q ss_pred             CcchHHHHHHhhcCcceechHHHHHHHhcCCCCCCCcccccCccccccccCC-Cch------hhhc-----cCCCCCCCe
Q 002242          768 KLKTTKFLYGCAVNAFILKAKWLTDSVAAGSTVSPAKYMILSSQADLKRTGI-TEP------ICRD-----NHKYIFGRV  835 (948)
Q Consensus       768 ~~RT~KfL~GIAsGaWILKpsWLkDSiqAGk~LPEekYeI~S~ks~~k~srI-~~~------vh~k-----~~~~LFdG~  835 (948)
                      ..||.|||.++|.|+||||+.||.+|..+++++|+-.|+|++|++..-.+.+ +..      .-.+     ....|| |.
T Consensus       996 h~Rt~KYLeaLA~giPcVh~~fI~aC~e~nr~Vdy~~YLLpsGyS~rlds~l~~~i~~fn~~~nLkd~~l~vk~~l~-~~ 1074 (1176)
T KOG3548|consen  996 HYRTHKYLEALARGIPCVHNTFIQACGEQNRCVDYTDYLLPSGYSIRLDSQLMPAIEPFNPSENLKDTTLYVKSTLS-AR 1074 (1176)
T ss_pred             hhHHHHHHHHHHcCCCcccHHHHHHHHhccccccchhhcccCccccccccccccCccccCchhhccceeeEeecccc-ce
Confidence            9999999999999999999999999999999999999999999887221111 111      1011     112233 23


Q ss_pred             EEEEec-CCchhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeechHHHHHHH
Q 002242          836 GIMLHG-KPSFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIKSL  914 (948)
Q Consensus       836 rfyL~G-K~sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~VpsEWIIESI  914 (948)
                      .|...| ...|.+.|..||++||+-++..-...+...|..-...++|++++.-.  ...-.|+.+++.|+|+.|||||||
T Consensus      1075 ~v~q~gp~~~f~e~~~e~le~G~aa~vd~~hada~~~D~~l~~fdvvl~d~~~~--~svmk~ad~l~~pvvs~EWvIQti 1152 (1176)
T KOG3548|consen 1075 EVTQTGPGGTFIEIWKEILELGGAAVVDGYHADAETLDETLLKFDVVLVDGTFR--DSVMKYADTLGAPVVSSEWVIQTI 1152 (1176)
T ss_pred             eEEEecCCcchHHHHHHHHHhhchheecccccccccccccccceeEEEecCccH--HHHHHHHHHhCCCccChhHhheee
Confidence            333333 46799999999999999999743333333333444556666665442  234568999999999999999999


Q ss_pred             HhCCccCCCCCCC
Q 002242          915 HIGMLLPQTQDKH  927 (948)
Q Consensus       915 msgkLLPf~~d~~  927 (948)
                      +.|+-.-+++++.
T Consensus      1153 I~~~~i~~~~hpk 1165 (1176)
T KOG3548|consen 1153 ILGKAIEPNAHPK 1165 (1176)
T ss_pred             eccccCCcccCcc
Confidence            9999888876654

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1 Back     alignment and domain information
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>smart00292 BRCT breast cancer carboxy-terminal domain Back     alignment and domain information
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain Back     alignment and domain information
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1 Back     alignment and domain information
>smart00292 BRCT breast cancer carboxy-terminal domain Back     alignment and domain information
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A Back     alignment and domain information
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain Back     alignment and domain information
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair] Back     alignment and domain information
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair] Back     alignment and domain information
>PLN03122 Poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair] Back     alignment and domain information
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms] Back     alignment and domain information
>PLN03123 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>KOG3226 consensus DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification] Back     alignment and domain information
>PLN03122 Poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A Back     alignment and domain information
>PLN03123 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair] Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification] Back     alignment and domain information
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00575 dnlj DNA ligase, NAD-dependent Back     alignment and domain information
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair] Back     alignment and domain information
>TIGR00575 dnlj DNA ligase, NAD-dependent Back     alignment and domain information
>KOG3226 consensus DNA repair protein [Replication, recombination and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query948
2vxb_A241 DNA repair protein RHP9; BRCT, nucleus, cell cycle 3e-23
1kzy_C259 Tumor suppressor P53-binding protein 1; tandem-BRC 1e-22
1t15_A214 Breast cancer type 1 susceptibility protein; prote 3e-18
1t15_A214 Breast cancer type 1 susceptibility protein; prote 7e-04
3al2_A235 DNA topoisomerase 2-binding protein 1; BRCT domain 5e-18
1l0b_A229 BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu 7e-18
3sqd_A219 PAX-interacting protein 1; tandem BRCT domains, ce 8e-18
3l41_A220 BRCT-containing protein 1; BRC1, BRCT domain, tand 5e-16
2etx_A209 Mediator of DNA damage checkpoint protein 1; tande 2e-13
3u3z_A199 Microcephalin; DNA repair, cell cycle regulation, 3e-13
2nte_A210 BARD-1, BRCA1-associated ring domain protein 1; BR 4e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
3l46_A112 Protein ECT2; alternative splicing, guanine-nucleo 8e-08
1wf6_A132 Similar to S.pombe -RAD4+/CUT5+product (A40727); B 2e-07
2cou_A109 ECT2 protein; BRCT domain, RHO GTPase, structural 2e-07
2d8m_A129 DNA-repair protein XRCC1; parallel beta-sheet, DNA 1e-06
2ebw_A97 DNA repair protein REV1; A/B/A 3 layers, parallel 2e-06
1z56_C264 DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA 6e-06
3l3e_A107 DNA topoisomerase 2-binding protein 1; BRCT domain 2e-05
3olc_X298 DNA topoisomerase 2-binding protein 1; BRCT domain 5e-05
3olc_X298 DNA topoisomerase 2-binding protein 1; BRCT domain 4e-04
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A* Length = 241 Back     alignment and structure
 Score = 98.5 bits (244), Expect = 3e-23
 Identities = 37/242 (15%), Positives = 74/242 (30%), Gaps = 29/242 (11%)

Query: 707 LIFQGIKFLLTGFSSQKEK---EIEVLIQKYGGLVLLDI------------PPPNSQGKR 751
           LIF    F  +G   +       +E ++Q +GGLVL                      K 
Sbjct: 1   LIFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKP 60

Query: 752 CSRSHSQQLPVVICPKKLKTTKFLYGCAVNAFILKAKWLTDSVAAGSTVSPAKYMILSSQ 811
             RS S     V+     +  K+L   A N   +  +++   +     V  + Y++ S  
Sbjct: 61  QKRSKSWNQAFVVSDTFSRKVKYLEALAFNIPCVHPQFIKQCLKMNRVVDFSPYLLASGY 120

Query: 812 ADLKRTGITEPI------------CRDNHKYIFGRVGIMLHGKPSFCTKFAVIVKHGGGQ 859
           +      +++ I                   +FG+  + +  +     K     + G   
Sbjct: 121 SHRLDCTLSQRIEPFDTTDSLYDRLLARKGPLFGKKILFIIPEAKSWQKKIENTEQGQKA 180

Query: 860 VFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWIIKSLHIGML 919
           +     +  L+L     I   +       +     +   E    +V   WI++ L     
Sbjct: 181 LAHV--YHALALGADVEIRPNVAHLECDLILTMDGNIVDETNCPVVDPEWIVECLISQSD 238

Query: 920 LP 921
           + 
Sbjct: 239 IS 240
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B Length = 259 Back     alignment and structure
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Length = 214 Back     alignment and structure
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Length = 214 Back     alignment and structure
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Length = 235 Back     alignment and structure
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Length = 229 Back     alignment and structure
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Length = 219 Back     alignment and structure
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* Length = 220 Back     alignment and structure
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Length = 209 Back     alignment and structure
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Length = 199 Back     alignment and structure
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Length = 210 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Length = 112 Back     alignment and structure
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Length = 132 Back     alignment and structure
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 109 Back     alignment and structure
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129 Back     alignment and structure
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} Length = 97 Back     alignment and structure
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} Length = 264 Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Length = 298 Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Length = 298 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query948
1kzy_C259 Tumor suppressor P53-binding protein 1; tandem-BRC 99.98
2nte_A210 BARD-1, BRCA1-associated ring domain protein 1; BR 99.97
3al2_A235 DNA topoisomerase 2-binding protein 1; BRCT domain 99.96
1l0b_A229 BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu 99.96
1t15_A214 Breast cancer type 1 susceptibility protein; prote 99.96
3sqd_A219 PAX-interacting protein 1; tandem BRCT domains, ce 99.95
3u3z_A199 Microcephalin; DNA repair, cell cycle regulation, 99.95
2etx_A209 Mediator of DNA damage checkpoint protein 1; tande 99.94
2vxb_A241 DNA repair protein RHP9; BRCT, nucleus, cell cycle 99.94
3l41_A220 BRCT-containing protein 1; BRC1, BRCT domain, tand 99.92
3olc_X298 DNA topoisomerase 2-binding protein 1; BRCT domain 99.84
3ii6_X263 DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter 99.82
1z56_C264 DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA 99.76
3l3e_A107 DNA topoisomerase 2-binding protein 1; BRCT domain 99.47
2ebw_A97 DNA repair protein REV1; A/B/A 3 layers, parallel 99.44
3l46_A112 Protein ECT2; alternative splicing, guanine-nucleo 99.42
2d8m_A129 DNA-repair protein XRCC1; parallel beta-sheet, DNA 99.42
4id3_A92 DNA repair protein REV1; BRCT domain, protein bind 99.4
2cou_A109 ECT2 protein; BRCT domain, RHO GTPase, structural 99.35
1wf6_A132 Similar to S.pombe -RAD4+/CUT5+product (A40727); B 99.31
3olc_X298 DNA topoisomerase 2-binding protein 1; BRCT domain 99.2
3t7k_A256 RTT107, regulator of TY1 transposition protein 107 99.19
3pc6_A104 DNA repair protein XRCC1; BRCT domain, protein:pro 98.91
4id3_A92 DNA repair protein REV1; BRCT domain, protein bind 98.87
3u3z_A199 Microcephalin; DNA repair, cell cycle regulation, 98.86
3ef1_A442 RNA polymerase II subunit A C-terminal domain phos 98.85
3ef0_A372 RNA polymerase II subunit A C-terminal domain phos 98.85
3pa6_A107 Microcephalin; BRCT domain, cell cycle; HET: MSE; 98.73
1wf6_A132 Similar to S.pombe -RAD4+/CUT5+product (A40727); B 98.71
2ebw_A97 DNA repair protein REV1; A/B/A 3 layers, parallel 98.71
1t15_A214 Breast cancer type 1 susceptibility protein; prote 98.69
3l3e_A107 DNA topoisomerase 2-binding protein 1; BRCT domain 98.69
2ep8_A100 Pescadillo homolog 1; A/B/A 3 layers, nucleolus, r 98.67
1l0b_A229 BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu 98.65
3pc6_A104 DNA repair protein XRCC1; BRCT domain, protein:pro 98.57
2d8m_A129 DNA-repair protein XRCC1; parallel beta-sheet, DNA 98.56
3pa6_A107 Microcephalin; BRCT domain, cell cycle; HET: MSE; 98.5
2nte_A210 BARD-1, BRCA1-associated ring domain protein 1; BR 98.35
1z56_C264 DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA 98.34
2cou_A109 ECT2 protein; BRCT domain, RHO GTPase, structural 98.33
3pc7_A88 DNA ligase 3; DNA repair, BRCT domain, protein:pro 98.3
2etx_A209 Mediator of DNA damage checkpoint protein 1; tande 98.25
2dun_A133 POL MU, DNA polymerase MU; layers A/B/A, parallel 98.24
2jw5_A106 DNA polymerase lambda; BRCT domain, family X polym 98.23
2coe_A120 Deoxynucleotidyltransferase, terminal variant; BRC 98.22
1kzy_C259 Tumor suppressor P53-binding protein 1; tandem-BRC 98.2
3l46_A112 Protein ECT2; alternative splicing, guanine-nucleo 98.17
2ep8_A100 Pescadillo homolog 1; A/B/A 3 layers, nucleolus, r 98.15
3pc7_A88 DNA ligase 3; DNA repair, BRCT domain, protein:pro 98.11
3ii6_X 263 DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter 98.1
2coe_A120 Deoxynucleotidyltransferase, terminal variant; BRC 98.06
2vxb_A 241 DNA repair protein RHP9; BRCT, nucleus, cell cycle 98.02
2jw5_A106 DNA polymerase lambda; BRCT domain, family X polym 97.98
1l7b_A92 DNA ligase; BRCT, autostructure, structural genomi 97.98
2k6g_A109 Replication factor C subunit 1; protein, BRCT, DNA 97.91
2cok_A113 Poly [ADP-ribose] polymerase-1; BRCT domain, DNA r 97.88
2dun_A133 POL MU, DNA polymerase MU; layers A/B/A, parallel 97.85
2ebu_A112 Replication factor C subunit 1; A/B/A 3 layers, pa 97.83
2cok_A113 Poly [ADP-ribose] polymerase-1; BRCT domain, DNA r 97.78
3ef0_A372 RNA polymerase II subunit A C-terminal domain phos 97.71
3sqd_A219 PAX-interacting protein 1; tandem BRCT domains, ce 97.67
2l42_A106 DNA-binding protein RAP1; BRCT domain, protein bin 97.59
3al2_A235 DNA topoisomerase 2-binding protein 1; BRCT domain 97.55
1l7b_A92 DNA ligase; BRCT, autostructure, structural genomi 97.51
2k6g_A109 Replication factor C subunit 1; protein, BRCT, DNA 97.51
3ef1_A442 RNA polymerase II subunit A C-terminal domain phos 97.46
3huf_A325 DNA repair and telomere maintenance protein NBS1; 97.3
2ebu_A112 Replication factor C subunit 1; A/B/A 3 layers, pa 97.27
2l42_A106 DNA-binding protein RAP1; BRCT domain, protein bin 96.59
3l41_A 220 BRCT-containing protein 1; BRC1, BRCT domain, tand 96.18
1dgs_A667 DNA ligase; AMP complex, NAD+-dependent; HET: DNA 93.92
1dgs_A667 DNA ligase; AMP complex, NAD+-dependent; HET: DNA 92.77
2owo_A671 DNA ligase; protein-DNA complex, ligase-DNA comple 92.21
2owo_A671 DNA ligase; protein-DNA complex, ligase-DNA comple 90.26
4gns_A290 Chitin biosynthesis protein CHS5; FN3, BRCT, tetra 84.05
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B Back     alignment and structure
Probab=99.98  E-value=4.1e-32  Score=278.89  Aligned_cols=211  Identities=18%  Similarity=0.287  Sum_probs=161.9

Q ss_pred             cccccccccceEEEEcCCCch-----------------------------hHHHHHHHHHHhCCEeecCCCCCCCcCCcc
Q 002242          702 KYVKRLIFQGIKFLLTGFSSQ-----------------------------KEKEIEVLIQKYGGLVLLDIPPPNSQGKRC  752 (948)
Q Consensus       702 ~~~Ks~IF~GLvFLLTGfss~-----------------------------keKELtkLIe~LGG~V~sDip~pldk~kR~  752 (948)
                      .+..+.||.|+.|++|+....                             .+.+|+++|+.+||+|+.+.....      
T Consensus         9 ~p~~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~------   82 (259)
T 1kzy_C            9 LPLNKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQ------   82 (259)
T ss_dssp             CCSSTTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTT------
T ss_pred             CCCCCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccc------
Confidence            456788999999999999763                             346799999999999998865110      


Q ss_pred             ccCCCCCCcEEECCCCcchHHHHHHhhcCcceechHHHHHHHhcCCCCCCCcccccCccccccccCCCchhhhccCCCCC
Q 002242          753 SRSHSQQLPVVICPKKLKTTKFLYGCAVNAFILKAKWLTDSVAAGSTVSPAKYMILSSQADLKRTGITEPICRDNHKYIF  832 (948)
Q Consensus       753 aef~st~~~VVI~~k~~RT~KfL~GIAsGaWILKpsWLkDSiqAGk~LPEekYeI~S~ks~~k~srI~~~vh~k~~~~LF  832 (948)
                        .+....+|||+++..||.|||+|+|.|+|||+++||.||+++|+++|+++|+++.+.+.. ..++   ..+...++||
T Consensus        83 --~~~~~~t~LIa~~~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~~g~s~~-~~~~---~~~~~~~~LF  156 (259)
T 1kzy_C           83 --CNTAYQCLLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLPAGYSLE-EQRI---LDWQPRENPF  156 (259)
T ss_dssp             --TTTTCEEEEEESSCCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGSBCCCEEETT-TTEE---ECCCCCCCTT
T ss_pred             --cccCCCeEEEcCCCCCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHccCCCCcccc-cchh---hhccccCCCC
Confidence              012234678999999999999999999999999999999999999999999998755432 1111   1122457899


Q ss_pred             CCeEEEEecCC--chhhhHHHHHHhcCceEEeehhhhhccccccccceeEEEecCCcchhhhhHHHHhhcCceeechHHH
Q 002242          833 GRVGIMLHGKP--SFCTKFAVIVKHGGGQVFKTLHWLVLSLETQKNIVGVIVAENERRVSRHLRHCAFEKKIAMVPASWI  910 (948)
Q Consensus       833 dG~rfyL~GK~--sFkDkfsrIIKAGGGQVVktLa~l~qSldDqs~s~~yIIvedESs~Sr~Lk~~Arr~gIP~VpsEWI  910 (948)
                      +|++||+++..  .|.+.|..||+++||+|+..+....+..+.....+++||++....  .+...++++.+||+|+.+||
T Consensus       157 ~G~~I~i~~~~~~~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~~~--~~~~~~a~~~~i~iVs~EWv  234 (259)
T 1kzy_C          157 QNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCP--ASVLKCAEALQLPVVSQEWV  234 (259)
T ss_dssp             TTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTTCC--HHHHHHHHHHTCCEECHHHH
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCCCh--HHHHHHHHhcCCCEecHHHH
Confidence            99999999954  688999999999999999876322111111124566777754322  34556889999999999999


Q ss_pred             HHHHHhCCccCCCCCC
Q 002242          911 IKSLHIGMLLPQTQDK  926 (948)
Q Consensus       911 IESImsgkLLPf~~d~  926 (948)
                      ++||+.|++||++.++
T Consensus       235 ~~sI~~~~ll~~~~hp  250 (259)
T 1kzy_C          235 IQCLIVGERIGFKQHP  250 (259)
T ss_dssp             HHHHHHTSCCCTTSSG
T ss_pred             HHHHHhCCcCCCCcCc
Confidence            9999999999998654
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Back     alignment and structure
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Back     alignment and structure
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Back     alignment and structure
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Back     alignment and structure
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Back     alignment and structure
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Back     alignment and structure
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Back     alignment and structure
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A* Back     alignment and structure
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Back     alignment and structure
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Back     alignment and structure
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} Back     alignment and structure
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} Back     alignment and structure
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Back     alignment and structure
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Back     alignment and structure
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A Back     alignment and structure
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A Back     alignment and structure
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Back     alignment and structure
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Back     alignment and structure
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Back     alignment and structure
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* Back     alignment and structure
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Back     alignment and structure
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} Back     alignment and structure
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Back     alignment and structure
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Back     alignment and structure
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A Back     alignment and structure
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* Back     alignment and structure
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Back     alignment and structure
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} Back     alignment and structure
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A* Back     alignment and structure
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Back     alignment and structure
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A* Back     alignment and structure
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens} Back     alignment and structure
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B Back     alignment and structure
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Back     alignment and structure
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A* Back     alignment and structure
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Back     alignment and structure
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A* Back     alignment and structure
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens} Back     alignment and structure
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2 Back     alignment and structure
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A Back     alignment and structure
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A Back     alignment and structure
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A* Back     alignment and structure
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A Back     alignment and structure
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Back     alignment and structure
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Back     alignment and structure
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Back     alignment and structure
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2 Back     alignment and structure
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A Back     alignment and structure
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Back     alignment and structure
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* Back     alignment and structure
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A* Back     alignment and structure
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A* Back     alignment and structure
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli} Back     alignment and structure
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli} Back     alignment and structure
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 948
d1kzyc1153 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) 4e-08
d1t15a2102 c.15.1.3 (A:1758-1859) Breast cancer associated pr 3e-06
d1t15a1109 c.15.1.3 (A:1649-1757) Breast cancer associated pr 4e-04
d1cdza_96 c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Hom 0.001
>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: 53BP1
domain: 53BP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 4e-08
 Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 10/93 (10%)

Query: 716 LTGFSSQKEKEIEVLIQKYGGLVLLDI-PPPNSQGKRCSRSHSQQLPVVICPKKLKTTKF 774
                   ++  E  ++   G +L D      +   +C         ++I  +  +T K+
Sbjct: 52  FLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQC---------LLIADQHCRTRKY 102

Query: 775 LYGCAVNAFILKAKWLTDSVAAGSTVSPAKYMI 807
               A     +   W+ DS  A    +   Y++
Sbjct: 103 FLCLASGIPCVSHVWVHDSCHANQLQNYRNYLL 135
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 Back     information, alignment and structure
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 96 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query948
d1kzyc1153 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 99.65
d1t15a1109 Breast cancer associated protein, BRCA1 {Human (Ho 99.59
d1wf6a_132 DNA topoisomerase II binding protein 1, TopBP1 {Hu 99.48
d1cdza_96 DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta 99.42
d1t15a2102 Breast cancer associated protein, BRCA1 {Human (Ho 99.4
d1kzyc2106 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 99.38
d1t15a2102 Breast cancer associated protein, BRCA1 {Human (Ho 99.14
d1cdza_96 DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta 98.99
d1wf6a_132 DNA topoisomerase II binding protein 1, TopBP1 {Hu 98.92
d1in1a_88 DNA ligase III alpha {Human (Homo sapiens) [TaxId: 98.71
d1in1a_88 DNA ligase III alpha {Human (Homo sapiens) [TaxId: 98.49
d1l7ba_92 NAD+-dependent DNA ligase, domain 4 {Thermus therm 98.26
d1l0ba297 Breast cancer associated protein, BRCA1 {Rat (Ratt 98.1
d1t15a1109 Breast cancer associated protein, BRCA1 {Human (Ho 97.72
d1kzyc1153 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 97.5
d1l7ba_92 NAD+-dependent DNA ligase, domain 4 {Thermus therm 97.33
d1kzyc2106 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 96.3
d1l0ba297 Breast cancer associated protein, BRCA1 {Rat (Ratt 96.19
>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: 53BP1
domain: 53BP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.1e-16  Score=152.90  Aligned_cols=101  Identities=19%  Similarity=0.291  Sum_probs=79.7

Q ss_pred             ccccccceEEEEcCCCchh-----------------------------HHHHHHHHHHhCCEeecCCCCCCCcCCccccC
Q 002242          705 KRLIFQGIKFLLTGFSSQK-----------------------------EKEIEVLIQKYGGLVLLDIPPPNSQGKRCSRS  755 (948)
Q Consensus       705 Ks~IF~GLvFLLTGfss~k-----------------------------eKELtkLIe~LGG~V~sDip~pldk~kR~aef  755 (948)
                      -+.||.|+.|+||+.....                             +..++..|+.+||.|..+......        
T Consensus        12 ~~~lF~g~~F~lT~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~p~~~~~~~~~i~~~gg~v~~~~~~~~~--------   83 (153)
T d1kzyc1          12 NKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQC--------   83 (153)
T ss_dssp             STTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTT--------
T ss_pred             chhhhCCCEEEEecCCCchhhhhhhhcccccCCCccccccccccCccchhhhhhhhhhcCCeEeeccccccc--------
Confidence            3789999999999865421                             123456778888888776442111        


Q ss_pred             CCCCCcEEECCCCcchHHHHHHhhcCcceechHHHHHHHhcCCCCCCCcccccCcccc
Q 002242          756 HSQQLPVVICPKKLKTTKFLYGCAVNAFILKAKWLTDSVAAGSTVSPAKYMILSSQAD  813 (948)
Q Consensus       756 ~st~~~VVI~~k~~RT~KfL~GIAsGaWILKpsWLkDSiqAGk~LPEekYeI~S~ks~  813 (948)
                      +....++||++++.||.|||+|+|.|+|||+++||.||+++|+++|+.+|+|+++.+.
T Consensus        84 ~~~~~~~LIa~~~~RT~Kyl~Ala~g~piv~~~Wi~~c~~~~~~ld~~~YlLpag~s~  141 (153)
T d1kzyc1          84 NTAYQCLLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLPAGYSL  141 (153)
T ss_dssp             TTTCEEEEEESSCCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGSBCCCEEET
T ss_pred             cccceEEEecCCCCchHHHHHHHccCCcEEcHHHHHHHHHcCCcCChHHccCCCCCCc
Confidence            1233567999999999999999999999999999999999999999999999987766
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure