Citrus Sinensis ID: 002252
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 947 | 2.2.26 [Sep-21-2011] | |||||||
| B9HQZ6 | 994 | Probable alanine--tRNA li | yes | no | 0.996 | 0.949 | 0.820 | 0.0 | |
| Q9FFC7 | 978 | Probable alanine--tRNA li | yes | no | 0.955 | 0.925 | 0.782 | 0.0 | |
| C5Z7K4 | 961 | Probable alanine--tRNA li | N/A | no | 0.968 | 0.954 | 0.732 | 0.0 | |
| B9FSH5 | 932 | Probable alanine--tRNA li | yes | no | 0.946 | 0.961 | 0.744 | 0.0 | |
| B8B4H5 | 996 | Probable alanine--tRNA li | N/A | no | 0.946 | 0.899 | 0.745 | 0.0 | |
| Q2JLC4 | 884 | Alanine--tRNA ligase OS=S | yes | no | 0.925 | 0.990 | 0.560 | 0.0 | |
| Q2JTG8 | 883 | Alanine--tRNA ligase OS=S | yes | no | 0.920 | 0.987 | 0.568 | 0.0 | |
| B0JI84 | 874 | Alanine--tRNA ligase OS=M | yes | no | 0.914 | 0.990 | 0.568 | 0.0 | |
| Q8DH56 | 882 | Alanine--tRNA ligase OS=T | yes | no | 0.923 | 0.992 | 0.547 | 0.0 | |
| P74423 | 877 | Alanine--tRNA ligase OS=S | N/A | no | 0.914 | 0.987 | 0.558 | 0.0 |
| >sp|B9HQZ6|SYAP_POPTR Probable alanine--tRNA ligase, chloroplastic OS=Populus trichocarpa GN=POPTRDRAFT_821063 PE=3 SV=1 | Back alignment and function desciption |
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Score = 1602 bits (4148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 779/949 (82%), Positives = 866/949 (91%), Gaps = 5/949 (0%)
Query: 1 MAHYYPSILPCGHFLFKGATGVP-SARSTSASVQPLTEE-VEDKSQDFPSSGDSIRKRFL 58
+A + PSI PCG+F+ GA AR+T ASVQP+TEE VEDK+++ P SGD+IR+RFL
Sbjct: 49 VALFSPSIFPCGYFILGGARERRFGARNTQASVQPVTEELVEDKTKENPVSGDAIRRRFL 108
Query: 59 DFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDV 118
+FYASR HKVLPSASLVP+DPTVLLTIAGMLQFKPIFLGK PRQVPRA T+Q+CIRTNDV
Sbjct: 109 EFYASRSHKVLPSASLVPDDPTVLLTIAGMLQFKPIFLGKAPRQVPRATTAQKCIRTNDV 168
Query: 119 ENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAF 178
ENVGRT+RHHTFFEMLGNFSFGDYFKKEAI+WAWE ST EFGLPA+RLW+SVYEDDDEAF
Sbjct: 169 ENVGRTTRHHTFFEMLGNFSFGDYFKKEAIKWAWELSTKEFGLPADRLWVSVYEDDDEAF 228
Query: 179 EIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFI 238
EIW+ EVGVPVE IKRMG +DNFW SGATGPCGPCSE+YYDFHP+RG + DLGDD+RFI
Sbjct: 229 EIWHDEVGVPVERIKRMGEEDNFWTSGATGPCGPCSELYYDFHPERGYKNTDLGDDSRFI 288
Query: 239 EFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASE 298
EFYNLVFMQYNK DDGSLEPLKQKNIDTGLGLER+ARILQKVPNNYETDLI+PII+KA+E
Sbjct: 289 EFYNLVFMQYNKMDDGSLEPLKQKNIDTGLGLERLARILQKVPNNYETDLIYPIIEKAAE 348
Query: 299 LANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLL 358
LAN+SYA ++DRT +NLKIIGDHLRAIVYL+SDGV PSNIGRGYVVRRLIRRAVRTGRLL
Sbjct: 349 LANISYALADDRTKMNLKIIGDHLRAIVYLISDGVLPSNIGRGYVVRRLIRRAVRTGRLL 408
Query: 359 GIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEK 418
G+KG G +G FLP+IAEK IELS HID DVKAR IL+EL+REELRFVQTLERGEK
Sbjct: 409 GVKGGGE---DGVFLPAIAEKVIELSPHIDPDVKARGHSILDELQREELRFVQTLERGEK 465
Query: 419 LLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIE 478
LLDQMLA+AL ++S ++P LSG+D FLLYDTFGFPVEIT EVAEE GV +DM GF++E
Sbjct: 466 LLDQMLAEALLNAQKSETLPCLSGKDVFLLYDTFGFPVEITTEVAEEQGVKIDMDGFEVE 525
Query: 479 MENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVS 538
MENQRRQSQAAHN VKL+V++ DLAE + DTEFLGYDTLSA+A+VESLL+NGK VI+VS
Sbjct: 526 MENQRRQSQAAHNVVKLAVENGGDLAENVHDTEFLGYDTLSARAVVESLLLNGKSVIQVS 585
Query: 539 KGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTI 598
+GS+VEVLLN+TPFYAESGGQIGD+GFLYVTQ ++QTAVVE+KDV+KSLGSVFVHKGTI
Sbjct: 586 EGSEVEVLLNKTPFYAESGGQIGDHGFLYVTQDQSKQTAVVEIKDVQKSLGSVFVHKGTI 645
Query: 599 REGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFD 658
REGVLEVGREVEA VD KLRQRAKVHHTATHLLQ+ALKKVIGQETSQAGSLVAFDRLRFD
Sbjct: 646 REGVLEVGREVEAAVDAKLRQRAKVHHTATHLLQSALKKVIGQETSQAGSLVAFDRLRFD 705
Query: 659 FNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVE 718
FNFHRPL D+ELEEIE LINGWIGD LLQTKVM+L DAK AGAIAMFGEKYGEQVRVVE
Sbjct: 706 FNFHRPLHDSELEEIENLINGWIGDGTLLQTKVMSLTDAKEAGAIAMFGEKYGEQVRVVE 765
Query: 719 VPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDSYMKHL 778
VPGVSMELCGGTHV+NT+EIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDS MK L
Sbjct: 766 VPGVSMELCGGTHVSNTSEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDSQMKLL 825
Query: 779 CSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKASTISSKAFTVGTSNEIRVL 838
CSTLKVK EEVTTRV+ LLE+LRT RNEV+ LRAKAAVYKAS I+SKAF+VGTS IRVL
Sbjct: 826 CSTLKVKAEEVTTRVDNLLEELRTVRNEVSALRAKAAVYKASMIASKAFSVGTSKTIRVL 885
Query: 839 VESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKF 898
VESMDD DAD+LKSAAEYL+DTLQDPAA++LGSCPDEGKVSL+AAF+ G+VD+GIQAGKF
Sbjct: 886 VESMDDFDADALKSAAEYLMDTLQDPAAIILGSCPDEGKVSLVAAFTPGVVDIGIQAGKF 945
Query: 899 IGPIAKLCGGGGGGRPNFAQAGGRKPENLSIALEKARADLVSVLSEKAS 947
IGPIAKLCGGGGGGRPNFAQAGGRKPENL+ ALEKAR DL+ +L+EKA+
Sbjct: 946 IGPIAKLCGGGGGGRPNFAQAGGRKPENLTNALEKARTDLILILTEKAN 994
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Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Populus trichocarpa (taxid: 3694) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 7 |
| >sp|Q9FFC7|SYAP_ARATH Probable alanine--tRNA ligase, chloroplastic OS=Arabidopsis thaliana GN=EMB86 PE=1 SV=2 | Back alignment and function description |
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| >sp|C5Z7K4|SYAP_SORBI Probable alanine--tRNA ligase, chloroplastic OS=Sorghum bicolor GN=Sb10g008780 PE=3 SV=1 | Back alignment and function description |
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| >sp|B9FSH5|SYAP_ORYSJ Probable alanine--tRNA ligase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os06g0245800 PE=2 SV=1 | Back alignment and function description |
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| >sp|B8B4H5|SYAP_ORYSI Probable alanine--tRNA ligase, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_22356 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q2JLC4|SYA_SYNJB Alanine--tRNA ligase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=alaS PE=3 SV=1 | Back alignment and function description |
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| >sp|Q2JTG8|SYA_SYNJA Alanine--tRNA ligase OS=Synechococcus sp. (strain JA-3-3Ab) GN=alaS PE=3 SV=1 | Back alignment and function description |
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| >sp|B0JI84|SYA_MICAN Alanine--tRNA ligase OS=Microcystis aeruginosa (strain NIES-843) GN=alaS PE=3 SV=1 | Back alignment and function description |
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| >sp|Q8DH56|SYA_THEEB Alanine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=alaS PE=3 SV=2 | Back alignment and function description |
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| >sp|P74423|SYA_SYNY3 Alanine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=alaS PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 947 | ||||||
| 225428201 | 1006 | PREDICTED: probable alanyl-tRNA syntheta | 1.0 | 0.941 | 0.822 | 0.0 | |
| 224105089 | 994 | predicted protein [Populus trichocarpa] | 0.996 | 0.949 | 0.820 | 0.0 | |
| 449444378 | 956 | PREDICTED: probable alanine--tRNA ligase | 0.993 | 0.984 | 0.786 | 0.0 | |
| 449518200 | 956 | PREDICTED: probable alanine--tRNA ligase | 0.993 | 0.984 | 0.785 | 0.0 | |
| 356516209 | 980 | PREDICTED: probable alanyl-tRNA syntheta | 0.965 | 0.932 | 0.783 | 0.0 | |
| 10177227 | 954 | alanyl-tRNA synthetase [Arabidopsis thal | 0.955 | 0.948 | 0.782 | 0.0 | |
| 30688660 | 978 | alanyl-tRNA synthetase [Arabidopsis thal | 0.955 | 0.925 | 0.782 | 0.0 | |
| 356509509 | 957 | PREDICTED: probable alanyl-tRNA syntheta | 0.965 | 0.955 | 0.778 | 0.0 | |
| 297812419 | 978 | aminoacyl-tRNA synthetase family protein | 0.971 | 0.940 | 0.761 | 0.0 | |
| 357467609 | 1005 | Alanyl-tRNA synthetase [Medicago truncat | 0.949 | 0.894 | 0.760 | 0.0 |
| >gi|225428201|ref|XP_002278951.1| PREDICTED: probable alanyl-tRNA synthetase, chloroplastic [Vitis vinifera] gi|297744517|emb|CBI37779.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1608 bits (4163), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 781/949 (82%), Positives = 858/949 (90%), Gaps = 2/949 (0%)
Query: 1 MAHYYPSILPCGHFLFKGATGVP-SARSTSASVQPLTEE-VEDKSQDFPSSGDSIRKRFL 58
+A PS LPCGH K V + RSTSAS+QP+TEE VEDKS+D P+SGDSIR RFL
Sbjct: 58 LALISPSGLPCGHSNLKQTREVRFTTRSTSASIQPMTEELVEDKSKDLPTSGDSIRHRFL 117
Query: 59 DFYASRGHKVLPSASLVPEDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDV 118
DFYASRGHKVLPS+SLVP+DPTVLLTIAGMLQFKPIFLGKVPRQVPRA T+QRCIRTNDV
Sbjct: 118 DFYASRGHKVLPSSSLVPDDPTVLLTIAGMLQFKPIFLGKVPRQVPRATTAQRCIRTNDV 177
Query: 119 ENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAF 178
ENVG+TSRHHTFFEMLGNFSFGDYFKKEAI+WAWE ST+E+GLPA+RLWISVYEDDDEA
Sbjct: 178 ENVGKTSRHHTFFEMLGNFSFGDYFKKEAIKWAWELSTIEYGLPADRLWISVYEDDDEAL 237
Query: 179 EIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFI 238
IW KEVGVPVE IKRMGA+DNFW SG TGPCGPCSEIYYDFHP+RG SDVDLGDDTRFI
Sbjct: 238 AIWTKEVGVPVERIKRMGAEDNFWTSGVTGPCGPCSEIYYDFHPERGYSDVDLGDDTRFI 297
Query: 239 EFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASE 298
EFYNLVFMQYNKKDDGSLEPLKQ NIDTGLGLER+ARILQKVPNNYETDLI+PII+KASE
Sbjct: 298 EFYNLVFMQYNKKDDGSLEPLKQMNIDTGLGLERMARILQKVPNNYETDLIYPIIEKASE 357
Query: 299 LANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLL 358
LANVSYA ++D +NLK+IGDHLRAIVYL+SDGV PSNIGRGYV RRLIRRAVRTGRLL
Sbjct: 358 LANVSYALADDHAKMNLKVIGDHLRAIVYLISDGVVPSNIGRGYVARRLIRRAVRTGRLL 417
Query: 359 GIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEK 418
GIKGDGRGN EGAFLP+IAEK IELS+ ID DVK+R RILEELKREELRFVQTLERGEK
Sbjct: 418 GIKGDGRGNPEGAFLPTIAEKVIELSSQIDPDVKSRAPRILEELKREELRFVQTLERGEK 477
Query: 419 LLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIE 478
LLD+MLA+AL + E+G+ P LSG+D FLLYDT+GFPVEIT E AEE GV +DM GF+IE
Sbjct: 478 LLDEMLANALLNSNENGNGPILSGKDVFLLYDTYGFPVEITTEAAEERGVGIDMNGFEIE 537
Query: 479 MENQRRQSQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVS 538
MENQRRQSQAAHNAVKL+V +SADL E I DTEFLGY+TLS KA++E LLVNG PVI+VS
Sbjct: 538 MENQRRQSQAAHNAVKLAVGNSADLTENISDTEFLGYETLSTKAVIEGLLVNGNPVIQVS 597
Query: 539 KGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTI 598
+GSDVE+ LNRTPFYAESGGQIGD+GFLYV + NQ+ AVVE+KDV+KSLG++FVHKGTI
Sbjct: 598 EGSDVEIFLNRTPFYAESGGQIGDHGFLYVNEDRNQKNAVVEIKDVQKSLGNIFVHKGTI 657
Query: 599 REGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFD 658
+EGV+EVG+EVEA VD LRQRAK+HHTATHLLQAALKKVIG ETSQAGSLVAFDRLRFD
Sbjct: 658 KEGVVEVGKEVEAAVDANLRQRAKIHHTATHLLQAALKKVIGDETSQAGSLVAFDRLRFD 717
Query: 659 FNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVE 718
FNFHRPL + EL EIE LINGWIGDA LLQTKVM L DAKRAGAIAMFGEKYGEQVRVVE
Sbjct: 718 FNFHRPLQEKELVEIEELINGWIGDATLLQTKVMPLADAKRAGAIAMFGEKYGEQVRVVE 777
Query: 719 VPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDSYMKHL 778
VPGVSMELCGGTHV+NT EIR FKIISEQGIASGIRRIEAVAG+AFIEY+NARD++M+ L
Sbjct: 778 VPGVSMELCGGTHVSNTCEIRGFKIISEQGIASGIRRIEAVAGDAFIEYVNARDNHMRQL 837
Query: 779 CSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKASTISSKAFTVGTSNEIRVL 838
CSTLKVK EEVTTRVE LLE+LR RNEV+ +RAKAAVYKAS ++ AF VGTS +IRVL
Sbjct: 838 CSTLKVKAEEVTTRVEALLEELRMTRNEVSAVRAKAAVYKASVMAGNAFPVGTSKKIRVL 897
Query: 839 VESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKF 898
VESMDD+DADSLKSAAEYL+DTLQDPAAV+LGSCP E KVSL+AAF+ G+VDLGIQAGKF
Sbjct: 898 VESMDDIDADSLKSAAEYLIDTLQDPAAVILGSCPSEEKVSLVAAFTPGVVDLGIQAGKF 957
Query: 899 IGPIAKLCGGGGGGRPNFAQAGGRKPENLSIALEKARADLVSVLSEKAS 947
IGPIAKLCGGGGGGRPNFAQAGGRKPENLS ALEKAR +LV++LSEKAS
Sbjct: 958 IGPIAKLCGGGGGGRPNFAQAGGRKPENLSGALEKAREELVAILSEKAS 1006
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224105089|ref|XP_002313683.1| predicted protein [Populus trichocarpa] gi|313471500|sp|B9HQZ6.1|SYAP_POPTR RecName: Full=Probable alanine--tRNA ligase, chloroplastic; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS gi|222850091|gb|EEE87638.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|449444378|ref|XP_004139952.1| PREDICTED: probable alanine--tRNA ligase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449518200|ref|XP_004166131.1| PREDICTED: probable alanine--tRNA ligase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356516209|ref|XP_003526788.1| PREDICTED: probable alanyl-tRNA synthetase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|10177227|dbj|BAB10601.1| alanyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|30688660|ref|NP_680210.2| alanyl-tRNA synthetase [Arabidopsis thaliana] gi|322510075|sp|Q9FFC7.2|SYAP_ARATH RecName: Full=Probable alanine--tRNA ligase, chloroplastic; AltName: Full=Alanyl-tRNA synthetase; Short=AlaRS; AltName: Full=Protein EMBRYO DEFECTIVE 1030; AltName: Full=Protein EMBRYO DEFECTIVE 263; AltName: Full=Protein EMBRYO DEFECTIVE 86; Flags: Precursor gi|332005698|gb|AED93081.1| alanyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|356509509|ref|XP_003523490.1| PREDICTED: probable alanyl-tRNA synthetase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297812419|ref|XP_002874093.1| aminoacyl-tRNA synthetase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319930|gb|EFH50352.1| aminoacyl-tRNA synthetase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|357467609|ref|XP_003604089.1| Alanyl-tRNA synthetase [Medicago truncatula] gi|355493137|gb|AES74340.1| Alanyl-tRNA synthetase [Medicago truncatula] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 947 | ||||||
| TAIR|locus:504954871 | 978 | EMB1030 "EMBRYO DEFECTIVE 1030 | 0.971 | 0.940 | 0.761 | 0.0 | |
| TIGR_CMR|CBU_1052 | 865 | CBU_1052 "alanyl-tRNA syntheta | 0.530 | 0.580 | 0.390 | 2e-173 | |
| TIGR_CMR|CHY_0538 | 874 | CHY_0538 "alanyl-tRNA syntheta | 0.827 | 0.897 | 0.418 | 1.6e-166 | |
| UNIPROTKB|O07438 | 904 | alaS "Alanine--tRNA ligase" [M | 0.918 | 0.962 | 0.396 | 3.6e-161 | |
| TIGR_CMR|GSU_0148 | 875 | GSU_0148 "alanyl-tRNA syntheta | 0.819 | 0.886 | 0.405 | 4e-154 | |
| TIGR_CMR|CJE_0613 | 842 | CJE_0613 "alanyl-tRNA syntheta | 0.321 | 0.361 | 0.512 | 2.7e-141 | |
| TIGR_CMR|ECH_0981 | 887 | ECH_0981 "alanyl-tRNA syntheta | 0.767 | 0.819 | 0.402 | 3.8e-133 | |
| TIGR_CMR|NSE_0156 | 848 | NSE_0156 "alanyl-tRNA syntheta | 0.423 | 0.472 | 0.417 | 3e-129 | |
| UNIPROTKB|Q56648 | 860 | alaS "Alanine--tRNA ligase" [V | 0.524 | 0.577 | 0.458 | 1.6e-128 | |
| TIGR_CMR|VC_0545 | 860 | VC_0545 "alanyl-tRNA synthetas | 0.524 | 0.577 | 0.458 | 1.6e-128 |
| TAIR|locus:504954871 EMB1030 "EMBRYO DEFECTIVE 1030" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3608 (1275.1 bits), Expect = 0., P = 0.
Identities = 703/923 (76%), Positives = 791/923 (85%)
Query: 25 ARSTSASVQPLTEEVEDKSQDFPSSGDSIRKRFLDFYASRGHKVLPSASLVPEDPTVLLT 84
A+S+S SVQP++E+ ++ Q SGDSIR+RFL+F+ASRGHKVLPS+SLVPEDPTVLLT
Sbjct: 55 AKSSSVSVQPVSEDAKEDYQSKDVSGDSIRRRFLEFFASRGHKVLPSSSLVPEDPTVLLT 114
Query: 85 IAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGDYFK 144
IAGMLQFKPIFLGKVPR+VP A T+QRCIRTND+ENVG+T+RHHTFFEMLGNFSFGDYFK
Sbjct: 115 IAGMLQFKPIFLGKVPREVPCATTAQRCIRTNDLENVGKTARHHTFFEMLGNFSFGDYFK 174
Query: 145 KEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNS 204
KEAI+WAWE ST+EFGLPANR+W+S+YEDDDEAFEIW EVGV VE IKRMG DNFW S
Sbjct: 175 KEAIKWAWELSTIEFGLPANRVWVSIYEDDDEAFEIWKNEVGVSVERIKRMGEADNFWTS 234
Query: 205 GATGPCGPCSEIYYDFHPDRGCS-DVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKN 263
G TGPCGPCSE+YYDF+P+RG DVDLGDDTRFIEFYNLVFMQYNK +DG LEPLKQKN
Sbjct: 235 GPTGPCGPCSELYYDFYPERGYDEDVDLGDDTRFIEFYNLVFMQYNKTEDGLLEPLKQKN 294
Query: 264 IDTGLGLERIARILQKVPNNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLR 323
IDTGLGLERIA+ILQKVPNNYETDLI+PII K SELAN+SY +ND+ +LK+I DH+R
Sbjct: 295 IDTGLGLERIAQILQKVPNNYETDLIYPIIAKISELANISYDSANDKAKTSLKVIADHMR 354
Query: 324 AIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIEL 383
A+VYL+SDGV PSNIGRGYVVRRLIRRAVR G+ LGI GD GNL+GAFLP++AEK IEL
Sbjct: 355 AVVYLISDGVSPSNIGRGYVVRRLIRRAVRKGKSLGINGDMNGNLKGAFLPAVAEKVIEL 414
Query: 384 STHIDSDVKAXXXXXXXXXXXXXXXFVQTLERGEKLLDQMLADALSRTRESGSVPRLSGQ 443
ST+IDSDVK F +TLERGEKLLDQ L DALS ++ P L G+
Sbjct: 415 STYIDSDVKLKASRIIEEIRQEELHFKKTLERGEKLLDQKLNDALSIADKTKDTPYLDGK 474
Query: 444 DAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDSADL 503
DAFLLYDTFGFPVEIT EVAEE GVS+DM GF++EMENQRRQSQAAHN VKL+V+D AD+
Sbjct: 475 DAFLLYDTFGFPVEITAEVAEERGVSIDMNGFEVEMENQRRQSQAAHNVVKLTVEDDADM 534
Query: 504 AEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDY 563
+ I DTEFLGYD+LSA+A+V+SLLVNGKPVI+VS+GS+VEVLL+RTPFYAESGGQI D+
Sbjct: 535 TKNIADTEFLGYDSLSARAVVKSLLVNGKPVIRVSEGSEVEVLLDRTPFYAESGGQIADH 594
Query: 564 GFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIXXXXXXXXXXXXAIVDPKLRQRAKV 623
GFLYV+ NQ+ AVVEV DV+KSL +FVHKGT+ A VD LRQRAKV
Sbjct: 595 GFLYVSSDGNQEKAVVEVSDVQKSL-KIFVHKGTVKSGALEVGKEVEAAVDADLRQRAKV 653
Query: 624 HHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLINGWIGD 683
HHTATHLLQ+ALKKV+GQETSQAGSLVAFDRLRFDFNF+R L D ELEEIE LIN WIGD
Sbjct: 654 HHTATHLLQSALKKVVGQETSQAGSLVAFDRLRFDFNFNRSLHDNELEEIECLINRWIGD 713
Query: 684 ANLLQTKVMALDDAKRAGAIAMFGEKYGE-QVRVVEVPGVSMELCGGTHVNNTAEIRAFK 742
A L+TKV+ L DAKRAGAIAMFGEKY E +VRVVEVPGVSMELCGGTHV NTAEIRAFK
Sbjct: 714 ATRLETKVLPLADAKRAGAIAMFGEKYDENEVRVVEVPGVSMELCGGTHVGNTAEIRAFK 773
Query: 743 IISEQGIASGIRRIEAVAGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRT 802
IISEQGIASGIRRIEAVAGEAFIEYIN+RDS M LCSTLKVK E+VT RVE LLE+LR
Sbjct: 774 IISEQGIASGIRRIEAVAGEAFIEYINSRDSQMTRLCSTLKVKAEDVTNRVENLLEELRA 833
Query: 803 ARNEVANLRAKAAVYKASTISSKAFTVGTSNEIRVLVESMDDMDADSLKSAAEYLVDTLQ 862
AR E ++LR+KAAVYKAS IS+KAFTVGTS IRVLVESMDD DADSLKSAAE+L+ TL+
Sbjct: 834 ARKEASDLRSKAAVYKASVISNKAFTVGTSQTIRVLVESMDDTDADSLKSAAEHLISTLE 893
Query: 863 DPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGR 922
DP AVVLGS P++ KVSL+AAFS G+V LG+QAGKFIGPIAKLCGGGGGG+PNFAQAGGR
Sbjct: 894 DPVAVVLGSSPEKDKVSLVAAFSPGVVSLGVQAGKFIGPIAKLCGGGGGGKPNFAQAGGR 953
Query: 923 KPENLSIALEKARADLVSVLSEK 945
KPENL ALEKAR DLV+ LSEK
Sbjct: 954 KPENLPSALEKAREDLVATLSEK 976
|
|
| TIGR_CMR|CBU_1052 CBU_1052 "alanyl-tRNA synthetase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CHY_0538 CHY_0538 "alanyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|O07438 alaS "Alanine--tRNA ligase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|GSU_0148 GSU_0148 "alanyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CJE_0613 CJE_0613 "alanyl-tRNA synthetase" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|ECH_0981 ECH_0981 "alanyl-tRNA synthetase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|NSE_0156 NSE_0156 "alanyl-tRNA synthetase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q56648 alaS "Alanine--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|VC_0545 VC_0545 "alanyl-tRNA synthetase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7VEG5 | SYA_PROMA | 6, ., 1, ., 1, ., 7 | 0.5185 | 0.9355 | 0.9932 | yes | no |
| Q015G2 | SYAP_OSTTA | 6, ., 1, ., 1, ., 7 | 0.5549 | 0.9250 | 0.9269 | yes | no |
| Q46I13 | SYA_PROMT | 6, ., 1, ., 1, ., 7 | 0.5176 | 0.9208 | 0.9841 | yes | no |
| B1WYQ5 | SYA_CYAA5 | 6, ., 1, ., 1, ., 7 | 0.5625 | 0.9165 | 0.9874 | yes | no |
| Q9FFC7 | SYAP_ARATH | 6, ., 1, ., 1, ., 7 | 0.7826 | 0.9556 | 0.9253 | yes | no |
| Q7U3R9 | SYA_SYNPX | 6, ., 1, ., 1, ., 7 | 0.5522 | 0.8965 | 0.9550 | yes | no |
| A5UHW6 | SYA_HAEIG | 6, ., 1, ., 1, ., 7 | 0.4366 | 0.8912 | 0.9656 | yes | no |
| B9HQZ6 | SYAP_POPTR | 6, ., 1, ., 1, ., 7 | 0.8208 | 0.9968 | 0.9496 | yes | no |
| Q7V419 | SYA_PROMM | 6, ., 1, ., 1, ., 7 | 0.5377 | 0.9229 | 0.9798 | yes | no |
| Q32CN1 | SYA_SHIDS | 6, ., 1, ., 1, ., 7 | 0.4407 | 0.8680 | 0.9383 | yes | no |
| Q1R804 | SYA_ECOUT | 6, ., 1, ., 1, ., 7 | 0.4418 | 0.8680 | 0.9383 | yes | no |
| Q7NI36 | SYA_GLOVI | 6, ., 1, ., 1, ., 7 | 0.5313 | 0.9123 | 0.9919 | yes | no |
| Q8YUD4 | SYA_NOSS1 | 6, ., 1, ., 1, ., 7 | 0.5597 | 0.9186 | 0.9886 | yes | no |
| Q10VG8 | SYA_TRIEI | 6, ., 1, ., 1, ., 7 | 0.5671 | 0.9155 | 0.9919 | yes | no |
| Q0TEI3 | SYA_ECOL5 | 6, ., 1, ., 1, ., 7 | 0.4407 | 0.8680 | 0.9383 | yes | no |
| A2BTZ9 | SYA_PROM5 | 6, ., 1, ., 1, ., 7 | 0.4916 | 0.9218 | 0.9853 | yes | no |
| B0JI84 | SYA_MICAN | 6, ., 1, ., 1, ., 7 | 0.5680 | 0.9144 | 0.9908 | yes | no |
| A2CDK7 | SYA_PROM3 | 6, ., 1, ., 1, ., 7 | 0.5368 | 0.9186 | 0.9753 | yes | no |
| B1XP68 | SYA_SYNP2 | 6, ., 1, ., 1, ., 7 | 0.5658 | 0.9144 | 0.9874 | yes | no |
| A8G242 | SYA_PROM2 | 6, ., 1, ., 1, ., 7 | 0.4877 | 0.9081 | 0.9706 | yes | no |
| Q3AGN4 | SYA_SYNSC | 6, ., 1, ., 1, ., 7 | 0.5444 | 0.9176 | 0.9775 | yes | no |
| Q31DD9 | SYA_PROM9 | 6, ., 1, ., 1, ., 7 | 0.4922 | 0.9123 | 0.9751 | yes | no |
| C1MR42 | SYAP_MICPC | 6, ., 1, ., 1, ., 7 | 0.5540 | 0.9292 | 0.9788 | N/A | no |
| Q2JTG8 | SYA_SYNJA | 6, ., 1, ., 1, ., 7 | 0.5680 | 0.9208 | 0.9875 | yes | no |
| Q4QM86 | SYA_HAEI8 | 6, ., 1, ., 1, ., 7 | 0.4366 | 0.8912 | 0.9656 | yes | no |
| C5Z7K4 | SYAP_SORBI | 6, ., 1, ., 1, ., 7 | 0.7326 | 0.9683 | 0.9542 | N/A | no |
| Q3AVV3 | SYA_SYNS9 | 6, ., 1, ., 1, ., 7 | 0.5325 | 0.9208 | 0.9797 | yes | no |
| A2BNH2 | SYA_PROMS | 6, ., 1, ., 1, ., 7 | 0.4916 | 0.9197 | 0.9830 | yes | no |
| A5GPF9 | SYA_SYNPW | 6, ., 1, ., 1, ., 7 | 0.5568 | 0.9017 | 0.9584 | yes | no |
| P74423 | SYA_SYNY3 | 6, ., 1, ., 1, ., 7 | 0.5580 | 0.9144 | 0.9874 | N/A | no |
| Q5N4B5 | SYA_SYNP6 | 6, ., 1, ., 1, ., 7 | 0.5596 | 0.9134 | 0.9874 | yes | no |
| B0CFX4 | SYA_ACAM1 | 6, ., 1, ., 1, ., 7 | 0.5508 | 0.9144 | 0.9919 | yes | no |
| A1AEN7 | SYA_ECOK1 | 6, ., 1, ., 1, ., 7 | 0.4418 | 0.8680 | 0.9383 | yes | no |
| A2BZG2 | SYA_PROM1 | 6, ., 1, ., 1, ., 7 | 0.5178 | 0.9155 | 0.9785 | yes | no |
| Q7V3N0 | SYA_PROMP | 6, ., 1, ., 1, ., 7 | 0.4862 | 0.9260 | 0.9898 | yes | no |
| Q0I6G6 | SYA_SYNS3 | 6, ., 1, ., 1, ., 7 | 0.5509 | 0.9218 | 0.9776 | yes | no |
| Q2JLC4 | SYA_SYNJB | 6, ., 1, ., 1, ., 7 | 0.5604 | 0.9250 | 0.9909 | yes | no |
| A4J2K4 | SYA_DESRM | 6, ., 1, ., 1, ., 7 | 0.4316 | 0.9070 | 0.9783 | yes | no |
| A9B9E5 | SYA_PROM4 | 6, ., 1, ., 1, ., 7 | 0.5192 | 0.9324 | 0.9921 | yes | no |
| A3PA95 | SYA_PROM0 | 6, ., 1, ., 1, ., 7 | 0.49 | 0.9123 | 0.9751 | yes | no |
| B8B4H5 | SYAP_ORYSI | 6, ., 1, ., 1, ., 7 | 0.7455 | 0.9461 | 0.8995 | N/A | no |
| Q31PW3 | SYA_SYNE7 | 6, ., 1, ., 1, ., 7 | 0.5607 | 0.9134 | 0.9874 | yes | no |
| Q8DH56 | SYA_THEEB | 6, ., 1, ., 1, ., 7 | 0.5474 | 0.9239 | 0.9920 | yes | no |
| P57933 | SYA_PASMU | 6, ., 1, ., 1, ., 7 | 0.4376 | 0.8912 | 0.9656 | yes | no |
| A5GWM4 | SYA_SYNR3 | 6, ., 1, ., 1, ., 7 | 0.5558 | 0.9134 | 0.9807 | yes | no |
| Q3MGN4 | SYA_ANAVT | 6, ., 1, ., 1, ., 7 | 0.5597 | 0.9186 | 0.9886 | yes | no |
| B9FSH5 | SYAP_ORYSJ | 6, ., 1, ., 1, ., 7 | 0.7444 | 0.9461 | 0.9613 | yes | no |
| B2J876 | SYA_NOSP7 | 6, ., 1, ., 1, ., 7 | 0.5546 | 0.9197 | 0.9897 | yes | no |
| A5D3F4 | SYA_PELTS | 6, ., 1, ., 1, ., 7 | 0.4458 | 0.9039 | 0.9760 | yes | no |
| A4S051 | SYAP_OSTLU | 6, ., 1, ., 1, ., 7 | 0.5491 | 0.9271 | 0.9690 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.7 | LOW CONFIDENCE prediction! |
| 3rd Layer | 6.1.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 947 | |||
| PLN02900 | 936 | PLN02900, PLN02900, alanyl-tRNA synthetase | 0.0 | |
| PRK00252 | 865 | PRK00252, alaS, alanyl-tRNA synthetase; Reviewed | 0.0 | |
| COG0013 | 879 | COG0013, AlaS, Alanyl-tRNA synthetase [Translation | 0.0 | |
| TIGR00344 | 851 | TIGR00344, alaS, alanine--tRNA ligase | 0.0 | |
| pfam01411 | 551 | pfam01411, tRNA-synt_2c, tRNA synthetases class II | 0.0 | |
| PRK13902 | 900 | PRK13902, alaS, alanyl-tRNA synthetase; Provisiona | 1e-143 | |
| TIGR03683 | 902 | TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase | 1e-139 | |
| cd00673 | 232 | cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS | 1e-130 | |
| PRK01584 | 594 | PRK01584, PRK01584, alanyl-tRNA synthetase; Provis | 1e-121 | |
| PRK01584 | 594 | PRK01584, PRK01584, alanyl-tRNA synthetase; Provis | 9e-42 | |
| COG2872 | 241 | COG2872, COG2872, Predicted metal-dependent hydrol | 6e-29 | |
| smart00863 | 43 | smart00863, tRNA_SAD, Threonyl and Alanyl tRNA syn | 2e-17 | |
| pfam07973 | 44 | pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synt | 3e-17 | |
| PLN02961 | 223 | PLN02961, PLN02961, alanine-tRNA ligase | 4e-09 | |
| pfam02272 | 69 | pfam02272, DHHA1, DHHA1 domain | 1e-08 | |
| PRK12305 | 575 | PRK12305, thrS, threonyl-tRNA synthetase; Reviewed | 1e-04 |
| >gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 1356 bits (3513), Expect = 0.0
Identities = 471/959 (49%), Positives = 621/959 (64%), Gaps = 81/959 (8%)
Query: 39 VEDKSQDFPSSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLG 97
ED + + GD IR+ FL F+ S+GH LPS+ LVP +DPT+L T AGM QFKPIFLG
Sbjct: 2 PEDDAPEKEWPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLG 61
Query: 98 KV-----PRQVPRAATSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAI 148
R++PRA +Q+CIR ND+++VG+ + HHTFFEMLGN+SFGDYFKKEAI
Sbjct: 62 TADPNTPLRKLPRATNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAI 121
Query: 149 QWAWEFSTVEFGLPANRLWISVYEDDD------EAFEIWNKEVGVPVEHIKRMGADDNFW 202
WAWE T +GLPA+RL+ + + D+ EA IW + P E + G DNFW
Sbjct: 122 GWAWELLTKVYGLPADRLYATYFGGDEKQAPDDEARAIWLDYL--PEERVLPFGCKDNFW 179
Query: 203 NSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQK 262
G TGPCGPCSEI+YD +R +D+ DD RFIE +NLVF+Q+N++ DGSL+PL K
Sbjct: 180 EMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPAK 239
Query: 263 NIDTGLGLERIARILQKVPNNYETDLIFPIIKKASE------LANVSYAQSNDRTNLNLK 316
++DTG+GLER+A ILQ P+NY+TDL PI E A A+ +DR ++ +
Sbjct: 240 HVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAYR 299
Query: 317 IIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSI 376
++ DH+R + + ++DGV PSN GRGYV+RRL+RRAVR GRLL E F P++
Sbjct: 300 VVADHIRTLSFAIADGVVPSNEGRGYVLRRLLRRAVRYGRLL-------LGAEEGFFPAL 352
Query: 377 AEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGS 436
E +ELS + +VK E+RI E + EEL F +TLE+G + + LA A +
Sbjct: 353 VEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKKALAAAKANGG---- 408
Query: 437 VPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHN----- 491
P LSG+DAFLLYDT+GFPV++T+ +AEE GV+VDM+GF+ ME R +S+AAH
Sbjct: 409 -PVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGG 467
Query: 492 AVKLSVDDSADLAEK--IPDTEFLGYDTLS-AKAIVESLLVNGKPVIKVSKGSDVEVLLN 548
A++L+ + ++ L ++ +FL YD LS +A+V+++L G V VS+G +V ++L+
Sbjct: 468 AIELAAEATSWLQKQGVAATDDFLKYDWLSDHEAVVKAILTGGGFVESVSEGDEVGIVLD 527
Query: 549 RTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGRE 608
+T FYAESGGQIGD G L + G AVVEV DV+K+ G +H GT+ EG + VG
Sbjct: 528 KTSFYAESGGQIGDTGVLEGSGG-----AVVEVSDVQKA-GGFVLHIGTVTEGSVSVGDA 581
Query: 609 VEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDT 668
V VD R+R +HTATHLL +ALK+V+G Q GSLVAF++LRFDF+ +P+
Sbjct: 582 VTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGKPMTPE 641
Query: 669 ELEEIERLINGWIGDANLLQTKVMALDDAKR-AGAIAMFGEKYGEQVRVVEVPGV-SMEL 726
EL E+E L+N WIGDA ++ K M L DAKR G A+FGEKY + VRVV V GV SMEL
Sbjct: 642 ELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVGGVYSMEL 701
Query: 727 CGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGEAFIEYINARDSYMKHLCSTLKV-- 784
CGGTHV+NTAE AFK++SE+GIA GIRRI AV G A +E INA DS + L S LKV
Sbjct: 702 CGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERELDSALKVEG 761
Query: 785 ----------------------KDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKASTI 822
K EE+ RV L ++LR A+ E A LRAK AV KA+ +
Sbjct: 762 SDLEKKVASLKSRVDAAVIPAAKKEEIRARVSALQKELRAAQKEAAALRAKLAVAKATEL 821
Query: 823 SSKAFTVGTSNEIRVLVESMDD-MDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLI 881
+SKA + G S VLV +D +DA +LK AAE ++ L DPAAVVL S ++GKVSL+
Sbjct: 822 ASKALSAGKS----VLVARLDVGVDAAALKEAAEKVIAKLGDPAAVVLSSDEEKGKVSLV 877
Query: 882 AAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNFAQAGGRKPENLSIALEKARADLVS 940
AA G+V G++AGK++G IAKLCGGGGGG+P FAQ GR E L ALEKARA V+
Sbjct: 878 AAVPPGVVKKGLKAGKWLGAIAKLCGGGGGGKPGFAQGQGRDAEKLDAALEKARAFAVA 936
|
Length = 936 |
| >gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase | Back alignment and domain information |
|---|
| >gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) | Back alignment and domain information |
|---|
| >gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase | Back alignment and domain information |
|---|
| >gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
| >gnl|CDD|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
| >gnl|CDD|178546 PLN02961, PLN02961, alanine-tRNA ligase | Back alignment and domain information |
|---|
| >gnl|CDD|216955 pfam02272, DHHA1, DHHA1 domain | Back alignment and domain information |
|---|
| >gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 947 | |||
| COG0013 | 879 | AlaS Alanyl-tRNA synthetase [Translation, ribosoma | 100.0 | |
| PLN02900 | 936 | alanyl-tRNA synthetase | 100.0 | |
| TIGR00344 | 851 | alaS alanine--tRNA ligase. The model describes ala | 100.0 | |
| PRK00252 | 865 | alaS alanyl-tRNA synthetase; Reviewed | 100.0 | |
| KOG0188 | 895 | consensus Alanyl-tRNA synthetase [Translation, rib | 100.0 | |
| TIGR03683 | 902 | A-tRNA_syn_arch alanyl-tRNA synthetase. This famil | 100.0 | |
| PRK13902 | 900 | alaS alanyl-tRNA synthetase; Provisional | 100.0 | |
| PRK01584 | 594 | alanyl-tRNA synthetase; Provisional | 100.0 | |
| PF01411 | 552 | tRNA-synt_2c: tRNA synthetases class II (A); Inter | 100.0 | |
| cd00673 | 232 | AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II | 100.0 | |
| COG2872 | 241 | Predicted metal-dependent hydrolases related to al | 100.0 | |
| KOG2105 | 415 | consensus Predicted metal-dependent hydrolase, con | 100.0 | |
| PLN02961 | 223 | alanine-tRNA ligase | 100.0 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 99.76 | |
| PLN02837 | 614 | threonine-tRNA ligase | 99.74 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 99.71 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 99.66 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 99.59 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 99.48 | |
| PF07973 | 44 | tRNA_SAD: Threonyl and Alanyl tRNA synthetase seco | 99.43 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 99.18 | |
| smart00863 | 44 | tRNA_SAD Threonyl and Alanyl tRNA synthetase secon | 99.18 | |
| PF02272 | 68 | DHHA1: DHHA1 domain; InterPro: IPR003156 This doma | 98.18 | |
| KOG1637 | 560 | consensus Threonyl-tRNA synthetase [Translation, r | 96.38 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 96.04 | |
| PRK09348 | 283 | glyQ glycyl-tRNA synthetase subunit alpha; Validat | 95.84 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 95.03 | |
| TIGR00388 | 293 | glyQ glycyl-tRNA synthetase, tetrameric type, alph | 94.59 | |
| PF01411 | 552 | tRNA-synt_2c: tRNA synthetases class II (A); Inter | 94.03 | |
| cd00733 | 279 | GlyRS_alpha_core Class II Glycyl-tRNA synthetase ( | 94.02 | |
| PRK14908 | 1000 | glycyl-tRNA synthetase; Provisional | 93.81 | |
| TIGR00644 | 539 | recJ single-stranded-DNA-specific exonuclease RecJ | 93.65 | |
| TIGR00458 | 428 | aspS_arch aspartyl-tRNA synthetase, archaeal type. | 91.32 | |
| cd00776 | 322 | AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class | 90.17 | |
| COG0752 | 298 | GlyQ Glycyl-tRNA synthetase, alpha subunit [Transl | 89.15 | |
| TIGR00462 | 304 | genX lysyl-tRNA synthetase-like protein GenX. Many | 87.98 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 87.78 | |
| PF02091 | 284 | tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit | 87.5 | |
| PRK09350 | 306 | poxB regulator PoxA; Provisional | 87.49 | |
| TIGR00499 | 496 | lysS_bact lysyl-tRNA synthetase, eukaryotic and no | 83.37 |
| >COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-254 Score=2222.19 Aligned_cols=867 Identities=50% Similarity=0.851 Sum_probs=817.5
Q ss_pred CCCCHHHHHHHHHHHHhhCCCeeeCCcCCcC-CCCccceeccccccccccccccCCCCCCCccccccccccCCccccCCC
Q 002252 46 FPSSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRTNDVENVGRT 124 (947)
Q Consensus 46 ~~~~~~eiR~~Fl~fF~~~gH~~~~s~slvp-~d~tllftnAGm~qfk~~f~g~~~p~~~r~~~~QkCiR~nDldnVG~t 124 (947)
.+||++|||++||+||++|||+++||||||| +|||||||||||+||||||+|.++||++|+||||||||+|||||||+|
T Consensus 4 ~~~t~~EiR~~FL~FF~~kgH~~v~s~slVP~nDptLLftnAGm~~FK~~f~g~v~p~~~r~~~sQkcIR~NDieNVG~T 83 (879)
T COG0013 4 MKLTTNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPANRAVTSQKCIRTNDIDNVGYT 83 (879)
T ss_pred ccCCHHHHHHHHHHHHHHCCCeecCCCCcCCCCCCCeEEeecccccchhhhcCCCCCCCCCeeccccccccCchhhcCcc
Confidence 4599999999999999999999999999999 799999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccC
Q 002252 125 SRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNS 204 (947)
Q Consensus 125 ~rHhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnfW~~ 204 (947)
+|||||||||||||||||||+|||.|||||||++|||||+|||||||++|+||+++|++++|+|++||+++|.+||||+|
T Consensus 84 ~RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~vtvy~~Ddea~~~W~~~~gip~~rIir~~~~dNfW~~ 163 (879)
T COG0013 84 ARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLYVTVYEDDDEAYNEWEKIIGIPPERIIRIGASDNFWEM 163 (879)
T ss_pred ccchhHHHhhhcCchhHHHHHHHHHHHHHHHHhhcCCCHHHEEEEEecCchHHHHHHHhhcCCCHHHeeecCcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEeecCCCCCCCCCCC--CCCCceEEEeeeeccccccc-CCCccccCccCcccccchHHHHHHHHhCCC
Q 002252 205 GATGPCGPCSEIYYDFHPDRGCSDVDL--GDDTRFIEFYNLVFMQYNKK-DDGSLEPLKQKNIDTGLGLERIARILQKVP 281 (947)
Q Consensus 205 G~~GpcGpcsEi~~d~g~~~~~~~~~~--~~~~r~lEiwNlVFmq~~~~-~~g~~~~L~~~~iDtGmGlERi~~vlqg~~ 281 (947)
|+ ||||||||||||||+.++++.+.. .|++|||||||||||||||+ .+|+|.|||+||||||||||||+|||||+|
T Consensus 164 G~-GPcGPcsEI~yD~G~~~~~~~~~~~~~d~dR~lEiwNLVFmQfnr~~~~g~~~~Lp~k~IDTGmGLERi~~vlQ~~~ 242 (879)
T COG0013 164 GD-GPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNIDTGMGLERIAAVLQGVP 242 (879)
T ss_pred CC-cCCCCceEEEEcCCcccCCCCCCCcCCCCCceEEEeeeeehhhccCCCCCCcccCCCCCcccCccHHHHHHHHcCCC
Confidence 99 999999999999999999887743 78999999999999999999 699999999999999999999999999999
Q ss_pred CCccccccHHHHHHHHHHhCCCccCCccccccceEEechhhhHHHHhhcCCCccCCCCCchHHHHHHHHHHHHHHHhCCC
Q 002252 282 NNYETDLIFPIIKKASELANVSYAQSNDRTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIK 361 (947)
Q Consensus 282 s~ydtdlf~p~i~~i~~~~~~~y~~~~~~~~~~~r~iaDH~R~~~~~i~DG~~Psn~grgYvlRrilRRa~r~~~~lg~~ 361 (947)
||||||+|.|||+.+++++|..|..+.+..++++||||||+||++|||+||++|||+|||||||||||||+||+++||++
T Consensus 243 tnyd~dlf~~ii~~~e~~~g~~~~~~~~~~~~s~rVIADH~Rs~~f~iaDGv~PSNegrGYvlRriiRRa~R~~~~LG~~ 322 (879)
T COG0013 243 TNYDTDLFRPIIKAIEKLTGKKYGEDEEDPDVSFRVIADHIRSLAFMIADGVLPSNEGRGYVLRRIIRRALRHGKLLGIK 322 (879)
T ss_pred cchhhhhhHHHHHHHHHHhCCcCCccccccceeEEEehhHHHHHHHHHhCCCCcCCCCccHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999765533478999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccc
Q 002252 362 GDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLADALSRTRESGSVPRLS 441 (947)
Q Consensus 362 ~~~~~~~~~~~l~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~~~~~~~g~~~~l~ 441 (947)
.| ||++||+.+++.|+++||||+++++.|+++|+.||++|.+||++|+++|+++++ ++++ + ++||
T Consensus 323 ~~--------fl~~LV~~~~~~m~~~ypel~~~~~~I~~vl~~EEe~F~~TL~~G~~l~~~~~~----~~~~-~--~~l~ 387 (879)
T COG0013 323 EP--------FLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKLEEERFAKTLERGLKLLEKELA----KLKK-S--KTLD 387 (879)
T ss_pred ch--------HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcc-C--CccC
Confidence 99 999999999999999999999999999999999999999999999999999998 6554 3 6899
Q ss_pred hHHHHHHhhhcCCChHHHHHHHHHcCCeeChhhHHHHHHHHHHHHHHhhcccccccCch--hHhhhhCCCCccccccccc
Q 002252 442 GQDAFLLYDTFGFPVEITKEVAEEHGVSVDMKGFDIEMENQRRQSQAAHNAVKLSVDDS--ADLAEKIPDTEFLGYDTLS 519 (947)
Q Consensus 442 g~~~f~LydTyG~P~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~~~~~~--~~l~~~~~~t~f~gY~~~~ 519 (947)
|++||+||||||||+|||++||+|+|++||+++|..+|++||++||+++ .+....... ..+.+..++|+|+||++++
T Consensus 388 ge~afkLYDTyGfP~eLt~eia~e~g~~VD~~~f~~~m~~qr~~ar~~~-~~~~~~~~~~~~~~~~~~~~tef~gY~~~~ 466 (879)
T COG0013 388 GEDAFKLYDTYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRERARASA-GSGEGAKESEDLELIDKLPETEFLGYDDLE 466 (879)
T ss_pred hHHheeehhcCCCCHHHHHHHHHHcCCeeccccHHHHHHHHHHHhhhcc-ccccccchhhhhhhhccCCCceeeeccccc
Confidence 9999999999999999999999999999999999999999999999765 222111111 2233346899999999999
Q ss_pred ceEEEEEEEeCCeeeeeecCCCeEEEEeccCCCcCCCCCCCCCEEEEEeCC-CCcccceeEEEEEEEEecCCEEEEEEEe
Q 002252 520 AKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQ-GTNQQTAVVEVKDVKKSLGSVFVHKGTI 598 (947)
Q Consensus 520 ~~a~Vl~i~~~~~~v~~~~~g~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~-~~~~~~~~~~V~dv~k~~~g~ivH~~~~ 598 (947)
.+++|+.++.+++.|+++.+|+.++||||+||||||||||++|+|+|..++ . .+.|.||||.++++++|.+..
T Consensus 467 ~~~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D~G~i~~~~~~------~~~V~dvqK~~~~~~vH~~~~ 540 (879)
T COG0013 467 MEFKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIFGDGGG------RFEVTDVQKVGNGVIVHKGKV 540 (879)
T ss_pred ceEEEEEEEecCcccccccCCceEEEEEecCCccCCCCCccCceEEEEecCCc------EEEEEEEEEcCCceEEEEEee
Confidence 999999999887668899999999999999999999999999999999864 4 899999999965999999999
Q ss_pred eccccCCCCEEEEEEccccchhHHhhccHHHHHHHHHHhHhCCcceeccccccCCcEEEeecCCCCCCHHHHHHHHHHHH
Q 002252 599 REGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDTELEEIERLIN 678 (947)
Q Consensus 599 ~~g~l~~G~~V~~~VD~~rR~~~m~~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN 678 (947)
..|.+++|+.|.++|||+||+.+|+||||||||++||++++|.|++|+||+++++++||||+|++++|+|+|++||++||
T Consensus 541 ~~G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~it~Eel~~IE~~vN 620 (879)
T COG0013 541 ESGELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAEELKEIERLVN 620 (879)
T ss_pred ccCccCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecCCCCCCHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeEEEEcCHHHHHHhccccccCCCCCCcEEEEEECCccccccCccccccccccceEEEEeeeccccceEEEEE
Q 002252 679 GWIGDANLLQTKVMALDDAKRAGAIAMFGEKYGEQVRVVEVPGVSMELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEA 758 (947)
Q Consensus 679 ~~I~~nlpV~~~~~~~eEA~~~~~~~l~~eky~~~VRVV~Igg~d~e~CgGTHV~nTgeIg~~kIl~~~~~~~Gv~RI~~ 758 (947)
++|++|+||++.+|+++||++.+++++|+++|++.||||+||++|+++||||||.|||+||.|||++++++++|+|||+|
T Consensus 621 e~I~~n~~V~~~~m~~~eAk~~Ga~alfGekY~~~VRVV~ig~~SvElCGGTHv~~Tg~IG~fkI~~e~~i~aGVrRIea 700 (879)
T COG0013 621 EIIRENLPVKTEEMDLDEAKAKGAMALFGEKYGDEVRVVEIGDFSVELCGGTHVSNTGDIGLFKIISEEGIAAGVRRIEA 700 (879)
T ss_pred HHHHcCCceeEEEccHHHHHHhChHhhcCCcCCCeEEEEEECCceeeccCCcccCCccceeeEEEEEecccccCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccee--ecccCCeE
Q 002252 759 VAGEAFIEYINARDSYMKHLCSTLKVKDEEVTTRVEGLLEDLRTARNEVANLRAKAAVYKASTISSKAFT--VGTSNEIR 836 (947)
Q Consensus 759 v~G~~A~~~~~~~~~~l~~l~~~L~~~~~~l~~~v~~L~~e~k~l~k~l~~L~~~la~~~a~~l~~~~~~--~~~~~~~~ 836 (947)
+||..|++++++..+.+++++..|++ +.+++.+|++|++++|+++|++.+|+++++......+...++. + ++++
T Consensus 701 vtG~~a~~~~~~~~~~l~~~a~~lk~-~~~~~~kv~~l~~~~k~lekel~~lk~~~~~~~~~~~~~~~~~~~i---~g~~ 776 (879)
T COG0013 701 VTGEAALEYLQEQEDLLKEIASLLKV-PPELLPKVERLLEELKELEKELERLKKKLAAAELADLLSNAKAEEI---GGVK 776 (879)
T ss_pred EcCHHHHHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccceee---CCEE
Confidence 99999999999999999999999999 6666669999999999999999999998888777776665443 6 8999
Q ss_pred EEEEEecCCCHHHHHHHHHHHHHhcCCCeEEEEEeecCCCcEEEEEEeccchhcccccHHHHHHHHHHHcCCCCCCcccc
Q 002252 837 VLVESMDDMDADSLKSAAEYLVDTLQDPAAVVLGSCPDEGKVSLIAAFSQGIVDLGIQAGKFIGPIAKLCGGGGGGRPNF 916 (947)
Q Consensus 837 vv~~~~~~~d~~~L~~la~~l~~~~~~~~vvll~s~~~~~k~~~v~~~s~~~~~~~i~a~~l~k~l~~~~gGkGGGk~~~ 916 (947)
+++..+++.|++.|+.+|+.|+++.++. +++|++ ..++|+.+++++++++..+ ++|++|+++++..+||||||+|+|
T Consensus 777 ~~~~~~~~~d~~~Lr~~a~~lk~k~~~~-vivl~~-~~~~Kv~~~~~v~~~~~~~-~~a~~lvk~la~~~gG~GGGr~d~ 853 (879)
T COG0013 777 VLAKEVDGADMKELREIADDLKKKLGSA-VIVLAS-VADGKVSLVVAVSKDLTDK-VKAGELVKELAAIVGGKGGGRPDM 853 (879)
T ss_pred EEEEEecCCCHHHHHHHHHHHHhhcCCc-EEEEEE-ecCCeEEEEEEechhhhcc-cCHHHHHHHHHHhcCCCCCCchhh
Confidence 9999999999999999999999998884 888887 5666999999999766654 999999999999999999999999
Q ss_pred eeeccCCcccHHHHHHHHHHHHHHHh
Q 002252 917 AQAGGRKPENLSIALEKARADLVSVL 942 (947)
Q Consensus 917 AQG~g~~~~~l~~al~~~~~~l~~~L 942 (947)
|||||+++.+++++++.+.+++++.|
T Consensus 854 Aqggg~d~~~~~~al~~~~~~i~~~l 879 (879)
T COG0013 854 AQGGGKDPEKLDEALELVIEWVKEKL 879 (879)
T ss_pred heeCCCCcccHHHHHHHHHHHHHhhC
Confidence 99999999999999999999998654
|
|
| >PLN02900 alanyl-tRNA synthetase | Back alignment and domain information |
|---|
| >TIGR00344 alaS alanine--tRNA ligase | Back alignment and domain information |
|---|
| >PRK00252 alaS alanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PRK13902 alaS alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK01584 alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain | Back alignment and domain information |
|---|
| >COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only] | Back alignment and domain information |
|---|
| >PLN02961 alanine-tRNA ligase | Back alignment and domain information |
|---|
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
| >PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer | Back alignment and domain information |
|---|
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain | Back alignment and domain information |
|---|
| >PF02272 DHHA1: DHHA1 domain; InterPro: IPR003156 This domain is often found adjacent to the DHH domain, found in the RecJ-like phosphoesterase family IPR001667 from INTERPRO, and is called DHHA1 for DHH associated domain | Back alignment and domain information |
|---|
| >KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
| >PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit | Back alignment and domain information |
|---|
| >PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain | Back alignment and domain information |
|---|
| >PRK14908 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
| >TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ | Back alignment and domain information |
|---|
| >TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type | Back alignment and domain information |
|---|
| >cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
| >COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR00462 genX lysyl-tRNA synthetase-like protein GenX | Back alignment and domain information |
|---|
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
| >PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
| >PRK09350 poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
| >TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 947 | ||||
| 3hxu_A | 441 | Crystal Structure Of Catalytic Fragment Of E. Coli | 1e-115 | ||
| 3hxz_A | 441 | Crystal Structure Of Catalytic Fragment Of E. Coli | 1e-114 | ||
| 1yfr_A | 465 | Crystal Structure Of Alanyl-Trna Synthetase In Comp | 1e-113 | ||
| 3htz_A | 464 | Crystal Structure Of The Catalytic Fragment Of Alan | 1e-113 | ||
| 1riq_A | 465 | The Crystal Structure Of The Catalytic Fragment Of | 1e-104 | ||
| 2zzf_A | 752 | Crystal Structure Of Alanyl-Trna Synthetase Without | 3e-53 | ||
| 2ztg_A | 739 | Crystal Structure Of Archaeoglobus Fulgidus Alanyl- | 8e-44 | ||
| 2zze_A | 752 | Crystal Structure Of Alanyl-Trna Synthetase Without | 3e-41 | ||
| 2e1b_A | 216 | Crystal Structure Of The Alax-M Trans-Editing Enzym | 2e-05 | ||
| 1nyq_A | 645 | Structure Of Staphylococcus Aureus Threonyl-Trna Sy | 3e-05 |
| >pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Alasa Length = 441 | Back alignment and structure |
|
| >pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa Length = 441 | Back alignment and structure |
| >pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex With Atp And Magnesium Length = 465 | Back alignment and structure |
| >pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna Synthetase In Complex With L-Serine: Re-Refined Length = 464 | Back alignment and structure |
| >pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The Alanyl-Trna Synthetase Length = 465 | Back alignment and structure |
| >pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain Length = 752 | Back alignment and structure |
| >pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking The C-Terminal Dimerization Domain In Complex With Ala-Sa Length = 739 | Back alignment and structure |
| >pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain In Lysine-Methylated Form Length = 752 | Back alignment and structure |
| >pdb|2E1B|A Chain A, Crystal Structure Of The Alax-M Trans-Editing Enzyme From Pyrococcus Horikoshii Length = 216 | Back alignment and structure |
| >pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna Synthetase Complexed With An Analogue Of Threonyl Adenylate Length = 645 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 | Back alignment and structure |
|---|
Score = 811 bits (2098), Expect = 0.0
Identities = 192/760 (25%), Positives = 311/760 (40%), Gaps = 126/760 (16%)
Query: 49 SGDSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFL-GKVPRQVPRA 106
D +R+ +L+F+ RGH + +V + LTIA + F+P G P
Sbjct: 61 ELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPL 120
Query: 107 ATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFGD-----YFKKEAIQWAWEFSTVEFGL 161
SQ CIR +D+++VGRT RH T FEM+ + +F Y+K E + + E
Sbjct: 121 TISQPCIRLDDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELLN----- 175
Query: 162 PANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDF- 220
E+GV E I + W G G GPC E
Sbjct: 176 ----------------------ELGVKKEDIVY---KEEPWAGG--GNAGPCLEAIVGGL 208
Query: 221 --------HPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLER 272
+ + R+ + N + + + + E
Sbjct: 209 EVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGYGLERFVWASKGTPTVYDAIFPEV 268
Query: 273 IARILQK--VPNNYETDLIFPIIKKASELANVSYAQSND--------------------- 309
+ I+ V N E + + I+ ++S+LA + +
Sbjct: 269 VDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRGERLNQLRKSVADTVGVSVEELE 328
Query: 310 ---RTNLNLKIIGDHLRAIVYLLSDGVFPSNIGRGYVVRRLIRRAVRTGRLLGIKGDGRG 366
+ + DH R I+++L DG+ PSN G GY+ R +IRR++R L +
Sbjct: 329 GIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLAEELELG----- 383
Query: 367 NLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGEKLLDQMLAD 426
L + E ++ + + + E L+ E+ R+ T+ +G +L+++++
Sbjct: 384 ----LDLYDLVEMHKKI---LGFEFDVPLSTVQEILELEKERYRTTVSKGTRLVERLVER 436
Query: 427 ALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDM-KGFDIEMENQRRQ 485
+L D LYD+ G PVE+ +A E G V+M K E+ + +
Sbjct: 437 K----------KKLEKDDLIELYDSHGIPVELAVGIAAEKGAEVEMPKDIYAELAKRHSK 486
Query: 486 SQAAHNAVKLSVDDSADLAEKIPDTEFLGYDTLSAKAIVESLLVNGKPVIKVSKGSDVEV 545
++ L + P TE L YD + +V V
Sbjct: 487 AEKVQE-------KKITLQNEYPATEKLYYDDPTLLEFEA----------EVIGVEGDFV 529
Query: 546 LLNRTPFYAESGGQIGDYGFLYVTQGTNQQTAVVEVKDVKKSLGSVFVHKGTIREGVLEV 605
+LNR+ FY ESGGQ D G+L G EV DV + V +H ++ EV
Sbjct: 530 ILNRSAFYPESGGQDNDVGYLIANGGK------FEVVDVLE-ADGVVLH--VVKGAKPEV 580
Query: 606 GREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPL 665
G +V+ ++D +R R HH+ATH+L +L+KV+G QAG+ F + R D R
Sbjct: 581 GTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRP 640
Query: 666 LDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYGEQVRVVEVPGVS 723
+ E++EIE L N I ++ + M +A+R ++ G G ++RVV+V G
Sbjct: 641 SEEEIKEIEMLANREILANKPIKWEWMDRIEAERKFGFRLYQGGVPPGRKIRVVQV-GDD 699
Query: 724 MELCGGTHVNNTAEIRAFKIISEQGIASGIRRIEAVAGEA 763
++ CGGTH +T EI KI+ + I G+ R E AGEA
Sbjct: 700 VQACGGTHCRSTGEIGMLKILKVESIQDGVIRFEFAAGEA 739
|
| >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 | Back alignment and structure |
|---|
| >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Length = 441 | Back alignment and structure |
|---|
| >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752 | Back alignment and structure |
|---|
| >2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Length = 216 | Back alignment and structure |
|---|
| >3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Length = 241 | Back alignment and structure |
|---|
| >1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Length = 157 | Back alignment and structure |
|---|
| >2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus} Length = 171 | Back alignment and structure |
|---|
| >3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus} Length = 111 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 947 | |||
| 2zze_A | 752 | Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML | 100.0 | |
| 2ztg_A | 739 | Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy | 100.0 | |
| 1yfs_A | 465 | Alanyl-tRNA synthetase; alpha-beta fold, helix-loo | 100.0 | |
| 3hy0_A | 441 | Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 3kew_A | 241 | DHHA1 domain protein; structural genomics, PSI-2, | 100.0 | |
| 2e1b_A | 216 | PH0108, 216AA long hypothetical alanyl-tRNA synthe | 100.0 | |
| 1v4p_A | 157 | Alanyl-tRNA synthetase; alanine-tRNA ligase, riken | 99.93 | |
| 2zvf_A | 171 | Alanyl-tRNA synthetase; C-terminal, oligomerizatio | 99.92 | |
| 1tke_A | 224 | Threonyl-tRNA synthetase; ligase; 1.46A {Escherich | 99.92 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 99.86 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 99.84 | |
| 3g98_A | 111 | Alanyl-tRNA synthetase; alpha and beta fold, amino | 99.68 | |
| 1nnh_A | 294 | Asparaginyl-tRNA synthetase-related peptide; struc | 91.61 | |
| 3rf1_A | 311 | Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA | 91.18 | |
| 1j5w_A | 298 | Glycyl-tRNA synthetase alpha chain; structural gen | 87.43 | |
| 2zxr_A | 666 | Single-stranded DNA specific exonuclease RECJ; DNA | 81.92 |
| >2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-203 Score=1792.79 Aligned_cols=661 Identities=29% Similarity=0.462 Sum_probs=608.0
Q ss_pred CCcccccceeeecCCCCccccCccCCc----CCCchhhcccCCCCCCCHHHHHHHHHHHHhhCC---CeeeCCcCCcC-C
Q 002252 6 PSILPCGHFLFKGATGVPSARSTSASV----QPLTEEVEDKSQDFPSSGDSIRKRFLDFYASRG---HKVLPSASLVP-E 77 (947)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~eiR~~Fl~fF~~~g---H~~~~s~slvp-~ 77 (947)
+.|-.||++||+.+..|+.|.|..-+. +.|+.+ ++||++|||++||+||++|| |++|||||||| +
T Consensus 18 ~~c~~c~~~fwt~~~~r~~cgd~~c~~y~fi~~~~~~-------~~~~~~eiR~~fl~fF~~kg~~~H~~v~s~~lvp~~ 90 (752)
T 2zze_A 18 XXCXVCGXPFWTLDPDRETCGDPPCDEYQFIGKPGIP-------RXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRW 90 (752)
T ss_dssp EECTTTCCEEEESCTTCCSCSSTTTSCCCCTTSCSSS-------SCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTT
T ss_pred eeecccCcceeecCCCcCCCCCCCCCCccccCCCccc-------ccCCHHHHHHHHHHHHhccCCCcceEEeccCcccCC
Confidence 469999999999999999999977544 434333 34999999999999999999 99999999999 8
Q ss_pred CCccceecccccccccccc-ccCCCCCCCccccccccccCCccccCCCCCcccccccccCcccC-----cccHHHHHHHH
Q 002252 78 DPTVLLTIAGMLQFKPIFL-GKVPRQVPRAATSQRCIRTNDVENVGRTSRHHTFFEMLGNFSFG-----DYFKKEAIQWA 151 (947)
Q Consensus 78 d~tllftnAGm~qfk~~f~-g~~~p~~~r~~~~QkCiR~nDldnVG~t~rHhTfFEMlGn~Sfg-----dYfK~eai~~a 151 (947)
|||||||||||+||||||+ |.++||++|+|+||||||+|||||||+|+||||||||||||||| ||||+|||.||
T Consensus 91 dptllftnAGm~~fk~~f~~G~~~pp~~r~~~~QkCiR~~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~a 170 (752)
T 2zze_A 91 RDDVLLVGASIMDFQPWVISGEADPPANPLVISQPSIRFTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELA 170 (752)
T ss_dssp CSSCSSCCSGGGGGTTHHHHTSSCCSSSSEEEEEEEECCTTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHH
T ss_pred CCCeeeeecchhhhhHhhcCCCcCCCCCCccccccceecCcHhhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHH
Confidence 9999999999999999997 99999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCcccCCCCCCCCCceEEEeecCCCCCCCCCCC
Q 002252 152 WEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPDRGCSDVDL 231 (947)
Q Consensus 152 we~lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnfW~~G~~GpcGpcsEi~~d~g~~~~~~~~~~ 231 (947)
|||||++||||++||+. +||||+|| ||||||||||||
T Consensus 171 we~lT~~~gl~~~ri~~-----------------------------~dNfW~~G--GpcGPcsEI~~d------------ 207 (752)
T 2zze_A 171 FEFFTKELXMXPEDITF-----------------------------KENPWAGG--GNAGPAFEVLYR------------ 207 (752)
T ss_dssp HHHHHHTSCCCGGGEEE-----------------------------EECCEEET--TEEECEEEEEET------------
T ss_pred HHHHhhhhhcchhheee-----------------------------ccCcccCC--CCCCCceeEEEC------------
Confidence 99999999999999741 69999999 999999999996
Q ss_pred CCCCceEEEeeeecccc-------------cccCCCccccCccCcccccchHHHHHHHHhCCCCCccccccHHHHHHHHH
Q 002252 232 GDDTRFIEFYNLVFMQY-------------NKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNNYETDLIFPIIKKASE 298 (947)
Q Consensus 232 ~~~~r~lEiwNlVFmq~-------------~~~~~g~~~~L~~~~iDtGmGlERi~~vlqg~~s~ydtdlf~p~i~~i~~ 298 (947)
+||||||||||| || ++|+|.|||+||||||||||||+|||||++||||| +|.|||++|++
T Consensus 208 -----glEiwNlVFmq~~~~~~~~~~~~~~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~ 280 (752)
T 2zze_A 208 -----GLEVATLVFMQYXXAPENAPQDQVVVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXX 280 (752)
T ss_dssp -----TEEEEEEEEEEEEECCTTCCSCCEEET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHH
T ss_pred -----CEeeeeeeeeeeccccccccccchhcc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHH
Confidence 299999999999 88 69999999999999999999999999999999999 99999999999
Q ss_pred HhCCCccC--------------Cccc-c--------------------------ccceEEechhhhHHHHhhcCCCccCC
Q 002252 299 LANVSYAQ--------------SNDR-T--------------------------NLNLKIIGDHLRAIVYLLSDGVFPSN 337 (947)
Q Consensus 299 ~~~~~y~~--------------~~~~-~--------------------------~~~~r~iaDH~R~~~~~i~DG~~Psn 337 (947)
++|++|+. +.+. . +.++||||||+||++|||+||++|||
T Consensus 281 ~~g~~y~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN 360 (752)
T 2zze_A 281 MAGIEKIDEKILMENSRLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSN 360 (752)
T ss_dssp HHTCCCCCHHHHHHHHHHHHTCCSSSSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred hcCCCccchhhhhhhhhccccCCccchhhHHHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCc
Confidence 99999853 2011 1 46899999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCCCCCCCccccchHHHHHHHHHHhccCChhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002252 338 IGRGYVVRRLIRRAVRTGRLLGIKGDGRGNLEGAFLPSIAEKAIELSTHIDSDVKAREQRILEELKREELRFVQTLERGE 417 (947)
Q Consensus 338 ~grgYvlRrilRRa~r~~~~lg~~~~~~~~~~~~~l~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~Ee~~F~~tl~~g~ 417 (947)
+|||||||||||||+||+++||++.| |++||+.+++.|++.||||.++++.|++||+.||++|.+||++|+
T Consensus 361 ~GrGYvlRrilRRa~r~~~~lg~~~~---------l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~ 431 (752)
T 2zze_A 361 VXAGYLARLLIRKSIRHLRELGLEVP---------LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGS 431 (752)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTCCCC---------HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhCCCcc---------hhHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCCccchHHHHHHhhhcCCChHHHHHHHHHcCCeeChh-hHHHHHHHHHHHHHHhhcccccc
Q 002252 418 KLLDQMLADALSRTRESGSVPRLSGQDAFLLYDTFGFPVEITKEVAEEHGVSVDMK-GFDIEMENQRRQSQAAHNAVKLS 496 (947)
Q Consensus 418 ~~l~~~~~~~~~~~~~~g~~~~l~g~~~f~LydTyG~P~dl~~~~a~e~g~~vd~~-~f~~~~~~~~~~s~~~~~~~~~~ 496 (947)
++|+++++ +++++|+ ++|||++||+||||||||+|||++||+|+|++||++ +|+++|++||+++|++.. . .
T Consensus 432 ~~l~~~~~----~~~~~~~-~~l~g~~af~LyDTyGfP~dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~~-~--~ 503 (752)
T 2zze_A 432 DLVRREIA----KLKKKGI-KEIPVEXLVTFYESHGLTPEIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKG-E--E 503 (752)
T ss_dssp HHHHHHHH----HHHHHSC-SCCCHHHHHHHHHHHCCCHHHHHHHHTTSSCCCCCCTTHHHHHHGGGGCC----------
T ss_pred HHHHHHHH----HhhhcCC-CccCHHHHHHHHhccCCCHHHHHHHHHHcCCccCCcccHHHHHHHHHHHHhhccc-c--c
Confidence 99999998 5544453 579999999999999999999999999999999999 899999999999886521 1 1
Q ss_pred cCchhHhhhhCCCCccccccc---ccceEEEEEEEeCCeeeeeecCCCeEEEEeccCCCcCCCCCCCCCEEEEEeCCCCc
Q 002252 497 VDDSADLAEKIPDTEFLGYDT---LSAKAIVESLLVNGKPVIKVSKGSDVEVLLNRTPFYAESGGQIGDYGFLYVTQGTN 573 (947)
Q Consensus 497 ~~~~~~l~~~~~~t~f~gY~~---~~~~a~Vl~i~~~~~~v~~~~~g~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~ 573 (947)
..+...+. ..++|+|+||++ ++++|+|+++.. .+||||+|||||||||||+|+|+|..++.
T Consensus 504 ~~~~~~~~-~~~~T~~l~Y~~~yl~~~~a~Vl~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~-- 567 (752)
T 2zze_A 504 LVDFELLK-DLPDTRRLYYEDPFMXEFDAXVLRVIX-------------DWVILDATAFYPEGGGQPYDTGVLIVNGR-- 567 (752)
T ss_dssp CCCSSSSS-SSCCCEEHHHHCTTCCEEEEEEEEEET-------------TEEEESEECSCCSBTTBCCCCEEEEETTE--
T ss_pred chhhHHhc-cCCCceeecccCCccceEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCE--
Confidence 10111222 357899999998 789999999974 36999999999999999999999987554
Q ss_pred ccceeEEEEEEEEecCCEEEEEEEeeccccCCCCEEEEEEccccchhHHhhccHHHHHHHHHHhHhCCcceeccccccCC
Q 002252 574 QQTAVVEVKDVKKSLGSVFVHKGTIREGVLEVGREVEAIVDPKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFD 653 (947)
Q Consensus 574 ~~~~~~~V~dv~k~~~g~ivH~~~~~~g~l~~G~~V~~~VD~~rR~~~m~~HTA~HLLsaAL~~~lG~~v~q~Gs~v~~d 653 (947)
.++|.||++. +|.++|++.. .+.+.+|++|.++|||+||+.+|++|||+|||++||+++||.|++|.|+++.++
T Consensus 568 ----~~~V~dv~k~-~g~ivH~~~~-~~~l~vGd~V~~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d 641 (752)
T 2zze_A 568 ----EVXVTNVQXV-GXVIIHXVED-PGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTD 641 (752)
T ss_dssp ----EEEEEEEEEE-TTEEEEEESC-GGGCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSS
T ss_pred ----EEEEEeeeec-CcEEEEeccc-cCccCcCCeEEEEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCC
Confidence 7999999999 8999999975 577899999999999999999999999999999999999999999999999999
Q ss_pred cEEEeecCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEcCHHHHHHhcccccc--CCCCCCcEEEEEECCccccccCccc
Q 002252 654 RLRFDFNFHRPLLDTELEEIERLINGWIGDANLLQTKVMALDDAKRAGAIAMF--GEKYGEQVRVVEVPGVSMELCGGTH 731 (947)
Q Consensus 654 ~~r~Df~~~~~lt~eel~~IE~~vN~~I~~nlpV~~~~~~~eEA~~~~~~~l~--~eky~~~VRVV~Igg~d~e~CgGTH 731 (947)
++||||++++++|+++|.+||++||++|++|+||++.+++++||++.+..++| +++|++.||||+||++|.++|||||
T Consensus 642 ~~rfDFs~~~~lt~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~~~lf~~ge~ygd~VRVV~IGd~svelCGGTH 721 (752)
T 2zze_A 642 WARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQGGVVPGREIRVVXIEDWDVQACGGTH 721 (752)
T ss_dssp CEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEEEEEHHHHHHHHCGGGCSSCCCCSSEEEEEEETTTEEEECCSCC
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCccceeecCHHHHhhcchhhhhcCCCCCCCeEEEEEECCceeCCCCCCc
Confidence 99999999999999999999999999999999999999999999999888888 7889999999999999999999999
Q ss_pred cccccccceEEEEeeeccccceEEEEEEecH
Q 002252 732 VNNTAEIRAFKIISEQGIASGIRRIEAVAGE 762 (947)
Q Consensus 732 V~nTgeIg~~kIl~~~~~~~Gv~RI~~v~G~ 762 (947)
|+|||+||.|||++++++++|+|||+|+||.
T Consensus 722 V~nTgeIG~fKIls~s~i~~GvrRIeavtG~ 752 (752)
T 2zze_A 722 LPSTGLVGPIXILRTERIQDGVERIIFACGE 752 (752)
T ss_dssp CSBGGGGCCEEEEEEEEEETTEEEEEEEECC
T ss_pred cCCHhHccEEEEEEEEEEcCCEEEEEEEeCC
Confidence 9999999999999999999999999999994
|
| >2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A | Back alignment and structure |
|---|
| >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* | Back alignment and structure |
|---|
| >3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} | Back alignment and structure |
|---|
| >2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 | Back alignment and structure |
|---|
| >1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A | Back alignment and structure |
|---|
| >2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* | Back alignment and structure |
|---|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
| >3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* | Back alignment and structure |
|---|
| >3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A* | Back alignment and structure |
|---|
| >1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1 | Back alignment and structure |
|---|
| >2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 947 | ||||
| d1riqa2 | 236 | d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) | 6e-96 | |
| d1riqa1 | 221 | a.203.1.1 (A:237-457) Putative anticodon-binding d | 2e-48 | |
| d2e1ba2 | 129 | d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C | 1e-30 | |
| d1v4pa_ | 151 | d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeo | 3e-27 | |
| d1nyra3 | 179 | d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrR | 4e-19 | |
| d2e1ba1 | 87 | b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-t | 1e-12 | |
| d1tkea2 | 162 | d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrR | 1e-10 |
| >d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Alanyl-tRNA synthetase (AlaRS) species: Aquifex aeolicus [TaxId: 63363]
Score = 300 bits (768), Expect = 6e-96
Identities = 129/241 (53%), Positives = 165/241 (68%), Gaps = 12/241 (4%)
Query: 49 SGDSIRKRFLDFYASRGHKVLPSASLVPE-DPTVLLTIAGMLQFKPIFLGKVPRQVPRAA 107
S IR+ FL F+ +GH + SA LVPE DPT+L AGM+ FK +FLG R RA
Sbjct: 3 SAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRAT 62
Query: 108 TSQRCIRT----NDVENVGRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPA 163
+ Q+C+R ND+E VG TSRHHTFFEMLGNFSFGDYFKKEAI++AWEF T LP
Sbjct: 63 SCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPK 122
Query: 164 NRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNFWNSGATGPCGPCSEIYYDFHPD 223
+L++SVY+DD+EA+ IWN+ +G+P E I R+G +DNFW G GPCGP SEIY D +
Sbjct: 123 EKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEE 182
Query: 224 RGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVPNN 283
+ R++E +NLVFMQYN+ ++G L PL NIDTG+GLERIA +LQ +N
Sbjct: 183 YEGDE-------RYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKNSN 235
Query: 284 Y 284
+
Sbjct: 236 F 236
|
| >d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 221 | Back information, alignment and structure |
|---|
| >d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 129 | Back information, alignment and structure |
|---|
| >d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 151 | Back information, alignment and structure |
|---|
| >d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 179 | Back information, alignment and structure |
|---|
| >d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 87 | Back information, alignment and structure |
|---|
| >d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} Length = 162 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 947 | |||
| d1riqa2 | 236 | Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [ | 100.0 | |
| d1riqa1 | 221 | Putative anticodon-binding domain of alanyl-tRNA s | 100.0 | |
| d2e1ba2 | 129 | AlaX-M trans-editing enzyme, C-terminal domain {Py | 99.97 | |
| d1v4pa_ | 151 | Hypothetical protein PH0574 {Archaeon Pyrococcus h | 99.96 | |
| d1nyra3 | 179 | Threonyl-tRNA synthetase (ThrRS), second 'addition | 99.93 | |
| d1tkea2 | 162 | Threonyl-tRNA synthetase (ThrRS), second 'addition | 99.77 | |
| d2e1ba1 | 87 | AlaX-M trans-editing enzyme, N-terminal domain {Py | 99.67 | |
| d1j5wa_ | 281 | Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermo | 96.27 | |
| d1ir6a_ | 385 | Exonuclease RecJ {Thermus thermophilus [TaxId: 274 | 88.62 |
| >d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Alanyl-tRNA synthetase (AlaRS) species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=9.4e-108 Score=847.36 Aligned_cols=231 Identities=56% Similarity=1.032 Sum_probs=225.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCeeeCCcCCcC-CCCccceeccccccccccccccCCCCCCCcccccccccc----CCcccc
Q 002252 47 PSSGDSIRKRFLDFYASRGHKVLPSASLVP-EDPTVLLTIAGMLQFKPIFLGKVPRQVPRAATSQRCIRT----NDVENV 121 (947)
Q Consensus 47 ~~~~~eiR~~Fl~fF~~~gH~~~~s~slvp-~d~tllftnAGm~qfk~~f~g~~~p~~~r~~~~QkCiR~----nDldnV 121 (947)
.||++|||++||+||++|||+++||||||| +|||||||||||+||||||+|+++||++|+|++|||||+ ||||||
T Consensus 1 ~mt~~eiR~~Fl~FF~~~gH~~v~s~slvp~~DptlLFtnAGM~~Fkp~flG~~~p~~~r~~~~QkCiR~~gk~nDld~V 80 (236)
T d1riqa2 1 SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQV 80 (236)
T ss_dssp CCCHHHHHHHHHHHHHHTTCEECCCCCSSCTTCTTCSSCCSTTGGGHHHHTTSSCCSCSEEEEEEEEECEETTEECTTTT
T ss_pred CCCHHHHHHHHHHHHHhCCCEEcCCCCcccCCCCCeeeecccchhhhhhhcCccccCCCccccccccccccCccchhhhc
Confidence 389999999999999999999999999999 799999999999999999999999999999999999999 899999
Q ss_pred CCCCCcccccccccCcccCcccHHHHHHHHHHhhhcccCCCCCceEEEEeCChHHHHHHHHHhcCCCCCcccccCCCCCc
Q 002252 122 GRTSRHHTFFEMLGNFSFGDYFKKEAIQWAWEFSTVEFGLPANRLWISVYEDDDEAFEIWNKEVGVPVEHIKRMGADDNF 201 (947)
Q Consensus 122 G~t~rHhTfFEMlGn~SfgdYfK~eai~~awe~lt~~l~l~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~I~~~~~~dnf 201 (947)
|+|+|||||||||||||||||||+|||.|||||||++|||||+|||||||++|+||+++|.+.+|||++||++++.+|||
T Consensus 81 G~t~rH~TfFEMLGn~SFgdYfK~eai~~awe~lt~~l~l~~~rl~vtv~~~D~e~~~~w~~~~gi~~~rI~~~~~~dNf 160 (236)
T d1riqa2 81 GYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEEDNF 160 (236)
T ss_dssp TTSSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETTCHHHHHHHHTTTCCCGGGEEEECHHHHE
T ss_pred CCcccchhhhhhccccccCchhHHHHHHHHHHHHHHHhccCccceEEEeecCcHHHHHHHHhhcCcccccceecCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCceEEEeecCCCCCCCCCCCCCCCceEEEeeeecccccccCCCccccCccCcccccchHHHHHHHHhCCC
Q 002252 202 WNSGATGPCGPCSEIYYDFHPDRGCSDVDLGDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERIARILQKVP 281 (947)
Q Consensus 202 W~~G~~GpcGpcsEi~~d~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~L~~~~iDtGmGlERi~~vlqg~~ 281 (947)
|+||++||||||||||||+|+.++ +++|||||||+|||||+|+++|++.|||+|+||||||||||+|||||++
T Consensus 161 W~~g~~GpcGPcsEi~yd~g~~~~-------~~~r~lEIwNlVFmqy~~~~~G~~~~L~~k~IDTGmGLERi~~vlqg~~ 233 (236)
T d1riqa2 161 WQMGDVGPCGPSSEIYVDRGEEYE-------GDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLERIASVLQGKN 233 (236)
T ss_dssp EESSSSEEEEEEEEEEEECCTTSC-------HHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEHHHHHHHHTTCS
T ss_pred cccCCCCCCCcceeEEEccccccC-------CCCceeeeeeeeheeeeecCCCccccCCCCcccCCccHHHHHHHHcCCC
Confidence 999999999999999999987653 3689999999999999999999999999999999999999999999999
Q ss_pred CCc
Q 002252 282 NNY 284 (947)
Q Consensus 282 s~y 284 (947)
|||
T Consensus 234 s~y 236 (236)
T d1riqa2 234 SNF 236 (236)
T ss_dssp SGG
T ss_pred CCC
Confidence 998
|
| >d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|