Citrus Sinensis ID: 002279

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940---
MNNSSLLTTPTSNRPLLFSPFLNPSPLPKRRRFKVSFPRNRSAATSASASAEATPTATPSDNIWGPRKELQGIQPVVDKLSPPVRLATSAVVIAGAVFAGFKLGSKYGGGSRNVAIGGAAILGAAGGAMAYAMNAAVPEVAAKRLHDYVTDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIKGESSDTSEEEPIKEEEKQTDEDEEEWESLETLKKITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVLCQLSRCLGNCQMS
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHccccHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccccHHcHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccc
cccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccHHccccHHHHHHccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccHHHHcccHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccEEHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccEEEccccccHHHHHHHHHHHHHHHcccccEEcccEEEEEEcccHHHHHHHHHHHcHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHccHHHHHHHHHHHHHHHHccccccccHHHHHHHccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccc
mnnssllttptsnrpllfspflnpsplpkrrrfkvsfprnrsaatsasasaeatptatpsdniwgprkelqgiqpvvdklsppvrlaTSAVVIAGAVFAGfklgskygggsrnvAIGGAAILGAAGGAMAYAMNAAVPEVAAKRLHDYvtdcndpgavkrEDIEAIASkygvskqdeAFNAELSEIYCRFvtsvlppggedlrgdeVDKIVQFKKalgiddpdaaAMHVEIGRRLFRQRLevgdrdgdmEQRWAFQKLIYVSTLVFgeassfllpwkrvfKVTDSQVEIAIRDNAKRLYASKLKsvgrdvdaEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISlrqhpnadrfargvgpvslvggefdgdrkmdDLKLLYRAYVTdslsggrmeESKLAALNQLRNIFglgkreseAIIVDVTSKVYRKRLgqavsggaleaADSKASFLQSLCEElhfdpqkasEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCvpqqtveaahSDICGSLFEKVVKDAISsgvegydgEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADikgessdtseeepikeeekqtdedEEEWESLETLkkitpskelaekmgkpgqteinlkddlperdrtdlyKTYLLYCLtgevtkipfgasittkkddseYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEifssgtgefdaeevyekipadlsinAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVLCQLsrclgncqms
mnnssllttptsnrpllfspflnpsplpkrRRFKVSFPRNRSaatsasasaeatptatpsdniwgprKELQGIQPVVDKLSPPVRLATSAVVIAGAVFAGFKLGSKYGGGSRNVAIGGAAILGAAGGAMAYAMNAAVPEVAAKRLHDYVTDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVLppggedlrgdEVDKIVQFKKalgiddpdaAAMHVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASklksvgrdvdaehIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTAlsilksrtrVVKGVAQVVEELDKVLAFNNLLISLRqhpnadrfargVGPVSLVGGEFDGDRKMDDLKLLYRAYVTdslsggrmEESKLAALNQLRNIfglgkreseaiIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSgvegydgevKKAVRKAahglrltreAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELkklitfntlVVTELVAdikgessdtseeepikeeekqtdedeeewesletlkkitpskelaekmgkpgqteinlkddlperdrTDLYKTYLLYCLtgevtkipfgasittkkddsEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEvqkqvglpseYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSsgtgefdaeeVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVLCQLsrclgncqms
MNNSSLLTTPTSNRpllfspflnpsplpKRRRFKVSFPRNRsaatsasasaeatptatpsDNIWGPRKELQGIQPVVDKLSPPVRLATSavviagavfagfKLGSKYGGGSRNVaiggaailgaaggamayamnaaVPEVAAKRLHDYVTDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKraraaenrteaakeLKKLITFNTLVVTELVADIKGESsdtseeepikeeekqtdedeeewesletlkkITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVLCQLSRCLGNCQMS
**********************************************************************QGIQPVVDKLSPPVRLATSAVVIAGAVFAGFKLGSKYGGGSRNVAIGGAAILGAAGGAMAYAMNAAVPEVAAKRLHDYVTDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGG****SKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADI*****************************************************************TDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVLCQLSRCLGN****
*********************************************************************LQGIQPVVDKLSPPVRLATSAVVIAGAVFAGFKLGSKYGGGSRNVAIGGAAILGAAGGAMAYAMNAAVPEVAAKRLHDYVTDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLE***********WAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKL*******DAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVT****************QVVEELDKVLAFNNLLIS********RFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLS******S*LAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSG**********SFLQSLCEELHFDPQKASEIHEEIYRQKLQQC***********AALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVK**************EAAMSIASKAVRRIFVIY**********************FNTLVVTE****************************************************************LPERDRTDLYKTYLLYCLTGEVTKIPF*************VLLSQLGGILGLTTKEI**********AFRQQAEVILA************************YA*KI**************************IRELKEASVDLDNMIS**L***LF**T***************EVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVLCQLSRCLGNCQM*
*********PTSNRPLLFSPFLNPSPLPKRRRFKVS**********************PSDNIWGPRKELQGIQPVVDKLSPPVRLATSAVVIAGAVFAGFKLGSKYGGGSRNVAIGGAAILGAAGGAMAYAMNAAVPEVAAKRLHDYVTDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADI*****************************LETLKKITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVLCQLSRCLGNCQMS
***************LLFSPFLNPSPLPKRRRFKVS******************************R*ELQGIQPVVDKLSPPVRLATSAVVIAGAVFAGFKLGSKYGGGSRNVAIGGAAILGAAGGAMAYAMNAAVPEVAAKRLHDYVTDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIKGES****************DEDEEEWESLETLKKITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVLCQLSRCLGNC***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNNSSLLTTPTSNRPLLFSPFLNPSPLPKRRRFKVSFPRNRSAATSASASAEATPTATPSDNIWGPRKELQGIQPVVDKLSPPVRLATSAVVIAGAVFAGFKLGSKYGGGSRNVAIGGAAILGAAGGAMAYAMNAAVPEVAAKRLHDYVTDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIKGESSDTSEEEPxxxxxxxxxxxxxxxxxxxxxKKITPSKELAEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVLCQLSRCLGNCQMS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query943 2.2.26 [Sep-21-2011]
Q8LPR91016 Protein TIC110, chloropla yes no 0.983 0.912 0.696 0.0
O24303996 Protein TIC110, chloropla N/A no 0.979 0.927 0.695 0.0
>sp|Q8LPR9|TI110_ARATH Protein TIC110, chloroplastic OS=Arabidopsis thaliana GN=TIC110 PE=1 SV=1 Back     alignment and function desciption
 Score = 1308 bits (3384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 662/951 (69%), Positives = 804/951 (84%), Gaps = 24/951 (2%)

Query: 3   NSSLLT------TPTSNRPLL--FSPFL----NPSPLPKRRRFKVSFPRNRSAATSASAS 50
           N SL+T      +P+   PLL  F P L    + S    RRR++VSFPR      S++AS
Sbjct: 2   NPSLVTAINAPISPSPRSPLLSHFLPTLPHRFSKSECLSRRRYRVSFPR------SSAAS 55

Query: 51  AEATPTATPSDN--IWGPRKELQGIQPVVDKLSPPVRLATSAVVIAGAVFAGFKLGSKYG 108
           ++    +T + N  I G +KEL G+QP+V+K++PPVRLATSAVV+A ++  G+ LG +  
Sbjct: 56  SDQLSVSTQAKNPGIHGNKKELTGLQPIVEKMTPPVRLATSAVVLAASLATGYGLGLRLA 115

Query: 109 GGSRNVAIGGAAILGAAGGAMAYAMNAAVPEVAAKRLHDYVTDCNDPGAVKREDIEAIAS 168
           G SRN+A GGAA+ GAAGGA+ YA+N+AVPEVAA  LH+YV +  DP +V ++D+E IA 
Sbjct: 116 G-SRNIAFGGAAVAGAAGGAVVYALNSAVPEVAAISLHNYVAEFEDPASVTKDDVEKIAD 174

Query: 169 KYGVSKQDEAFNAELSEIYCRFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMH 228
           +YGV+K DEAF AE+ +IYCR+VTSVLP  G+ L+GDEV KIV+FK ALGID+PDAAAMH
Sbjct: 175 RYGVNKGDEAFQAEICDIYCRYVTSVLPTEGQSLKGDEVAKIVKFKNALGIDEPDAAAMH 234

Query: 229 VEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVE 288
           +EIGRR+FRQRLE G+R+GD EQR AF +L+YVS LVFG+ASSFLLPWKRV KVTD+QVE
Sbjct: 235 MEIGRRIFRQRLETGEREGDAEQRRAFMRLVYVSALVFGDASSFLLPWKRVLKVTDAQVE 294

Query: 289 IAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENI 348
           IAIR+NAK+LYA +LK VGRD++ E++V LR+ QLS++LSD LAEDLFREHTRK+V ENI
Sbjct: 295 IAIRENAKQLYAERLKLVGRDINVENLVDLRKSQLSFKLSDELAEDLFREHTRKVVVENI 354

Query: 349 VTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEF 408
            +ALSILKSRTR  K +A VVEEL+KVL FNNLL+SL+ H  AD+FARGVGP+SL+G E 
Sbjct: 355 SSALSILKSRTRAAKSLASVVEELEKVLEFNNLLVSLKSHSEADQFARGVGPISLIGDES 414

Query: 409 DGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVY 468
           D +R+MDDLKLLYRAYVTD+LSGGR+EE+KL A++QLRNI GLGKRE+EAI VDVTSK Y
Sbjct: 415 DFERRMDDLKLLYRAYVTDALSGGRLEENKLVAMSQLRNILGLGKREAEAISVDVTSKSY 474

Query: 469 RKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELND 528
           RKRL  AVS G LEA DSKA +LQ LCEELHFD QKA  IHEEIYRQKLQQCV DGEL+D
Sbjct: 475 RKRLANAVSSGDLEAQDSKAKYLQKLCEELHFDAQKAGAIHEEIYRQKLQQCVTDGELSD 534

Query: 529 EDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAH 588
           ++VAALLRLRVMLC+PQQTV+ AH++ICG++FEKVV+DAISSGV+GYD E +K+VRKAAH
Sbjct: 535 DNVAALLRLRVMLCIPQQTVDTAHAEICGTIFEKVVRDAISSGVDGYDAETRKSVRKAAH 594

Query: 589 GLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIK 648
           GLRL+RE AMSIASKAVRR+F  YI+RARAAENRT++AKELKK+I FNTLVVTE+VADIK
Sbjct: 595 GLRLSRETAMSIASKAVRRVFTNYIRRARAAENRTDSAKELKKMIAFNTLVVTEMVADIK 654

Query: 649 GESSDTS-EEEPIKEEEKQTDEDEEEWESLETLKKITPSKELAEKMGKPGQTEINLKDDL 707
           GESSD + EE+P+  +EK+ D+++EEW SLE+L+K  P KELAEKMGKPGQTEI LKDDL
Sbjct: 655 GESSDKAPEEDPV--QEKEEDDEDEEWGSLESLRKTRPDKELAEKMGKPGQTEITLKDDL 712

Query: 708 PERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVH 767
           P+RDR DLYKTYLLYC+TGEVT+IPFGA ITTK+DDSEY+LL+QLGGILGL++KEIV++H
Sbjct: 713 PDRDRIDLYKTYLLYCVTGEVTRIPFGAQITTKRDDSEYLLLNQLGGILGLSSKEIVNIH 772

Query: 768 RGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIE 827
            GLAEQAFRQQAEVILADGQLTKAR+EQL+E+QKQVGLP   A+K+IKNITTTKMA AIE
Sbjct: 773 VGLAEQAFRQQAEVILADGQLTKARVEQLDELQKQVGLPQPQAEKVIKNITTTKMANAIE 832

Query: 828 TAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKI 887
           TAV QG+LNIKQIRELKEA+V LD+MI+ SLRE LFKKTV +IFSSGTGEFD  EVY+ I
Sbjct: 833 TAVNQGRLNIKQIRELKEANVSLDSMIAVSLREKLFKKTVSDIFSSGTGEFDETEVYQTI 892

Query: 888 PADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVLCQLSRCLG 938
           P+DLSI+ EKA+RVVH+LA++RLSNSL+QAV+LLRQ+N +GV+  L+  L 
Sbjct: 893 PSDLSIDVEKAKRVVHDLAQSRLSNSLVQAVALLRQRNSKGVVLSLNDLLA 943
Involved in protein precursor import into chloroplasts. Forms a voltage-dependent cation-selective channel at the inner envelope of chloroplasts, which specifically responds to a transit peptide. Associates with both the precursor and mature forms of the preprotein.
Arabidopsis thaliana (taxid: 3702)
>sp|O24303|TI110_PEA Protein TIC110, chloroplastic OS=Pisum sativum GN=TIC110 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query943
3594785031007 PREDICTED: protein TIC110, chloroplastic 0.984 0.921 0.761 0.0
147789732 1061 hypothetical protein VITISV_038562 [Viti 0.984 0.874 0.720 0.0
356553146996 PREDICTED: uncharacterized protein LOC10 0.978 0.926 0.755 0.0
2241466401013 predicted protein [Populus trichocarpa] 0.981 0.914 0.734 0.0
2555533731019 conserved hypothetical protein [Ricinus 0.993 0.919 0.748 0.0
356500924995 PREDICTED: uncharacterized protein LOC10 0.977 0.926 0.752 0.0
2241247241011 predicted protein [Populus trichocarpa] 0.969 0.904 0.743 0.0
4494549791014 PREDICTED: protein TIC110, chloroplastic 0.988 0.919 0.741 0.0
152210091016 translocon at the inner envelope membran 0.983 0.912 0.696 0.0
204667681016 chloroplast inner envelope protein, puta 0.983 0.912 0.695 0.0
>gi|359478503|ref|XP_002276796.2| PREDICTED: protein TIC110, chloroplastic-like [Vitis vinifera] gi|297745792|emb|CBI15848.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1427 bits (3694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 719/944 (76%), Positives = 827/944 (87%), Gaps = 16/944 (1%)

Query: 3   NSSLLTTPTSNRPLLFSPFLNPSP-------LPKRRRFKVSFPRNRSAATSASASAEATP 55
           N SLLT P  ++    SPFLNP+P       L +RRR+++S  R  S++T       + P
Sbjct: 2   NPSLLTAPPPSQH--SSPFLNPTPFRFSTTSLTRRRRYRISLIR--SSSTPPDPLTSSPP 57

Query: 56  TATPSDNIWGPRKELQGIQPVVDKLSPPVRLATSAVVIAGAVFAGFKLGSKYGGGSRNVA 115
           + T   +++G R+EL GIQP+VD LSPP+RL +SA+++AGA+ AG+ LG ++G  SRN A
Sbjct: 58  SVT--SDVFGGRRELSGIQPLVDSLSPPLRLVSSALIVAGAIAAGYGLGFRFGK-SRNTA 114

Query: 116 IGGAAILGAAGGAMAYAMNAAVPEVAAKRLHDYVTDCNDPGAVKREDIEAIASKYGVSKQ 175
           +GGA  +GAAGGA AYA+NA VPEVAA  LH+YV  C+DPGAVK+EDIE IA+KYGVSKQ
Sbjct: 115 LGGAVAIGAAGGAAAYALNACVPEVAAANLHNYVAGCDDPGAVKKEDIEEIANKYGVSKQ 174

Query: 176 DEAFNAELSEIYCRFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRL 235
           DEAFNAEL ++YCRFVTSV+PPG EDL+GDEVD I++FK +LGIDDPDAAAMH+EIGRR+
Sbjct: 175 DEAFNAELCDLYCRFVTSVVPPGSEDLKGDEVDTIIKFKSSLGIDDPDAAAMHMEIGRRI 234

Query: 236 FRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNA 295
           FRQRLE GDRDGD+EQR AFQKL+YVSTLVFGEAS FLLPWKRVF+VTDSQVE+A+RDNA
Sbjct: 235 FRQRLETGDRDGDIEQRRAFQKLVYVSTLVFGEASKFLLPWKRVFRVTDSQVEVAVRDNA 294

Query: 296 KRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSIL 355
           +RLYA KLKSVGRDVD   +V LRE QLS  LSD LAED+F+EHTRKLVEENI TALSIL
Sbjct: 295 QRLYAFKLKSVGRDVDVNQLVSLREAQLSCLLSDELAEDMFKEHTRKLVEENISTALSIL 354

Query: 356 KSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMD 415
           KSRTR V+G  QVVEEL+K LAFNNLLISL+ HP+A RFA GVGP+SL+GGE+DGDRKMD
Sbjct: 355 KSRTRAVRGATQVVEELNKALAFNNLLISLKNHPDAGRFACGVGPISLMGGEYDGDRKMD 414

Query: 416 DLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQA 475
           DLKLLYRAYV DSLS GRM E+KLAALNQL+NIFGLGKRE+E I++DVTSK YRKRL Q+
Sbjct: 415 DLKLLYRAYVADSLSSGRMVENKLAALNQLKNIFGLGKRETEGIMLDVTSKAYRKRLAQS 474

Query: 476 VSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALL 535
           VSGG LEAADSKA+FLQ++C+ELHFDP+KASEIHEEIYRQKLQQCVADGELN+EDVA LL
Sbjct: 475 VSGGDLEAADSKAAFLQNICDELHFDPKKASEIHEEIYRQKLQQCVADGELNEEDVAILL 534

Query: 536 RLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTRE 595
           RLRVMLCVPQQTVEAAH+DICGSLFEKVVKDAI+SG++GYD +VKK+VRKAAHGLRLTRE
Sbjct: 535 RLRVMLCVPQQTVEAAHADICGSLFEKVVKDAIASGIDGYDDDVKKSVRKAAHGLRLTRE 594

Query: 596 AAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIKGESSDTS 655
           AAMSIAS AVR+IF+ Y+KR+RAA NR EAAKELKK+I FN+LVVTELVADIKGESSD +
Sbjct: 595 AAMSIASTAVRKIFMNYVKRSRAAGNRIEAAKELKKMIAFNSLVVTELVADIKGESSDAA 654

Query: 656 EEEPIKEEEKQTDEDEEEWESLETLKKITPSKELAEKMG-KPGQTEINLKDDLPERDRTD 714
            EEPIKEEE Q +ED ++W+SLETL+KI P ++L  K+G + GQTEI LKDDLPERDRTD
Sbjct: 655 SEEPIKEEEVQIEED-DDWDSLETLRKIKPREKLTAKLGRRGGQTEITLKDDLPERDRTD 713

Query: 715 LYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQA 774
           LYKTYLL+CLTGEVTKIPFGA ITTKKDDSEY+LL+QLGGILGLT KEIV+VHR LAEQA
Sbjct: 714 LYKTYLLFCLTGEVTKIPFGAQITTKKDDSEYLLLNQLGGILGLTDKEIVEVHRSLAEQA 773

Query: 775 FRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGK 834
           FRQQAEVILADGQLTKARIEQLNEVQKQVGLP +YAQK+IKNITTTKM AAIETAV+QG+
Sbjct: 774 FRQQAEVILADGQLTKARIEQLNEVQKQVGLPPQYAQKVIKNITTTKMGAAIETAVSQGR 833

Query: 835 LNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSIN 894
           LNIKQIRELKEASVDLD+M+SESLREN+FKKTVDE+FSSGTGEFD EEVYEKIP DL+IN
Sbjct: 834 LNIKQIRELKEASVDLDSMLSESLRENVFKKTVDEMFSSGTGEFDGEEVYEKIPLDLNIN 893

Query: 895 AEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVLCQLSRCLG 938
           AEKA+ VVHELAR RLSNSLIQAVSLLRQ+N  GV+  L+  L 
Sbjct: 894 AEKAKGVVHELARTRLSNSLIQAVSLLRQRNSSGVVSSLNDLLA 937

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147789732|emb|CAN60839.1| hypothetical protein VITISV_038562 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356553146|ref|XP_003544919.1| PREDICTED: uncharacterized protein LOC100810630 [Glycine max] Back     alignment and taxonomy information
>gi|224146640|ref|XP_002326080.1| predicted protein [Populus trichocarpa] gi|222862955|gb|EEF00462.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255553373|ref|XP_002517728.1| conserved hypothetical protein [Ricinus communis] gi|223543126|gb|EEF44660.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356500924|ref|XP_003519280.1| PREDICTED: uncharacterized protein LOC100810328 [Glycine max] Back     alignment and taxonomy information
>gi|224124724|ref|XP_002319406.1| predicted protein [Populus trichocarpa] gi|222857782|gb|EEE95329.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449454979|ref|XP_004145231.1| PREDICTED: protein TIC110, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15221009|ref|NP_172176.1| translocon at the inner envelope membrane of chloroplasts 110 [Arabidopsis thaliana] gi|75157412|sp|Q8LPR9.1|TI110_ARATH RecName: Full=Protein TIC110, chloroplastic; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 110; Short=AtTIC110; Flags: Precursor gi|20453114|gb|AAM19799.1| At1g06940/F4H5_1 [Arabidopsis thaliana] gi|332189936|gb|AEE28057.1| translocon at the inner envelope membrane of chloroplasts 110 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|20466768|gb|AAM20701.1| chloroplast inner envelope protein, putative [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query943
TAIR|locus:20074371016 TIC110 "translocon at the inne 0.956 0.887 0.657 5.1e-312
TAIR|locus:2007437 TIC110 "translocon at the inner envelope membrane of chloroplasts 110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2993 (1058.6 bits), Expect = 5.1e-312, P = 5.1e-312
 Identities = 597/908 (65%), Positives = 710/908 (78%)

Query:    30 RRRFKVSFPRNRXXXXXXXXXXXXXXXXXXXDNIWGPRKELQGIQPVVDKLSPPVRLATS 89
             RRR++VSFPR+                      I G +KEL G+QP+V+K++PPVRLATS
Sbjct:    41 RRRYRVSFPRS----SAASSDQLSVSTQAKNPGIHGNKKELTGLQPIVEKMTPPVRLATS 96

Query:    90 XXXXXXXXXXXXKLGSKYGGGSRNVXXXXXXXXXXXXXXXXXXXXXXVPEVAAKRLHDYV 149
                          LG +  G SRN+                      VPEVAA  LH+YV
Sbjct:    97 AVVLAASLATGYGLGLRLAG-SRNIAFGGAAVAGAAGGAVVYALNSAVPEVAAISLHNYV 155

Query:   150 TDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVLPPGGEDLRGDEVDK 209
              +  DP +V ++D+E IA +YGV+K DEAF AE+ +IYCR+VTSVLP  G+ L+GDEV K
Sbjct:   156 AEFEDPASVTKDDVEKIADRYGVNKGDEAFQAEICDIYCRYVTSVLPTEGQSLKGDEVAK 215

Query:   210 IVQFKKALGIDDPDAAAMHVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEA 269
             IV+FK ALGID+PDAAAMH+EIGRR+FRQRLE G+R+GD EQR AF +L+YVS LVFG+A
Sbjct:   216 IVKFKNALGIDEPDAAAMHMEIGRRIFRQRLETGEREGDAEQRRAFMRLVYVSALVFGDA 275

Query:   270 SSFLLPWKRVFKVTDSQVEIAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSD 329
             SSFLLPWKRV KVTD+QVEIAIR+NAK+LYA +LK VGRD++ E++V LR+ QLS++LSD
Sbjct:   276 SSFLLPWKRVLKVTDAQVEIAIRENAKQLYAERLKLVGRDINVENLVDLRKSQLSFKLSD 335

Query:   330 ALAEDLFREHTRKLVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHP 389
              LAEDLFREHTRK+V ENI +ALSILKSRTR  K +A VVEEL+KVL FNNLL+SL+ H 
Sbjct:   336 ELAEDLFREHTRKVVVENISSALSILKSRTRAAKSLASVVEELEKVLEFNNLLVSLKSHS 395

Query:   390 NADRFARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIF 449
              AD+FARGVGP+SL+G E D +R+MDDLKLLYRAYVTD+LSGGR+EE+KL A++QLRNI 
Sbjct:   396 EADQFARGVGPISLIGDESDFERRMDDLKLLYRAYVTDALSGGRLEENKLVAMSQLRNIL 455

Query:   450 GLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIH 509
             GLGKRE+EAI VDVTSK YRKRL  AVS G LEA DSKA +LQ LCEELHFD QKA  IH
Sbjct:   456 GLGKREAEAISVDVTSKSYRKRLANAVSSGDLEAQDSKAKYLQKLCEELHFDAQKAGAIH 515

Query:   510 EEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAIS 569
             EEIYRQKLQQCV DGEL+D++VAALLRLRVMLC+PQQTV+ AH++ICG++FEKVV+DAIS
Sbjct:   516 EEIYRQKLQQCVTDGELSDDNVAALLRLRVMLCIPQQTVDTAHAEICGTIFEKVVRDAIS 575

Query:   570 SGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIKXXXXXXXXXXXXXXL 629
             SGV+GYD E +K+VRKAAHGLRL+RE AMSIASKAVRR+F  YI+              L
Sbjct:   576 SGVDGYDAETRKSVRKAAHGLRLSRETAMSIASKAVRRVFTNYIRRARAAENRTDSAKEL 635

Query:   630 KKLITFNTLVVTELVADIKGESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITPSKEL 689
             KK+I FNTLVVTE+VADIKGES                                 P KEL
Sbjct:   636 KKMIAFNTLVVTEMVADIKGESSDKAPEEDPVQEKEEDDEDEEWGSLESLRKT-RPDKEL 694

Query:   690 AEKMGKPGQTEINLKDDLPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLL 749
             AEKMGKPGQTEI LKDDLP+RDR DLYKTYLLYC+TGEVT+IPFGA ITTK+DDSEY+LL
Sbjct:   695 AEKMGKPGQTEITLKDDLPDRDRIDLYKTYLLYCVTGEVTRIPFGAQITTKRDDSEYLLL 754

Query:   750 SQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEY 809
             +QLGGILGL++KEIV++H GLAEQAFRQQAEVILADGQLTKAR+EQL+E+QKQVGLP   
Sbjct:   755 NQLGGILGLSSKEIVNIHVGLAEQAFRQQAEVILADGQLTKARVEQLDELQKQVGLPQPQ 814

Query:   810 AQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDE 869
             A+K+IKNITTTKMA AIETAV QG+LNIKQIRELKEA+V LD+MI+ SLRE LFKKTV +
Sbjct:   815 AEKVIKNITTTKMANAIETAVNQGRLNIKQIRELKEANVSLDSMIAVSLREKLFKKTVSD 874

Query:   870 IFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGV 929
             IFSSGTGEFD  EVY+ IP+DLSI+ EKA+RVVH+LA++RLSNSL+QAV+LLRQ+N +GV
Sbjct:   875 IFSSGTGEFDETEVYQTIPSDLSIDVEKAKRVVHDLAQSRLSNSLVQAVALLRQRNSKGV 934

Query:   930 LCQLSRCL 937
             +  L+  L
Sbjct:   935 VLSLNDLL 942


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.368    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      943       831   0.00080  122 3  11 22  0.41    34
                                                     37  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  331 KB (2168 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  67.07u 0.22s 67.29t   Elapsed:  00:00:03
  Total cpu time:  67.07u 0.22s 67.29t   Elapsed:  00:00:03
  Start:  Sat May 11 09:59:10 2013   End:  Sat May 11 09:59:13 2013
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009658 "chloroplast organization" evidence=IMP
GO:0031897 "Tic complex" evidence=TAS
GO:0045037 "protein import into chloroplast stroma" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0016020 "membrane" evidence=IDA
GO:0045036 "protein targeting to chloroplast" evidence=RCA
GO:0009536 "plastid" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LPR9TI110_ARATHNo assigned EC number0.69610.98300.9124yesno
O24303TI110_PEANo assigned EC number0.69570.97980.9277N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00023971001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (1007 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00021997001
SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (434 aa)
   •• • 0.812
GSVIVG00024636001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (513 aa)
   •• • 0.593
GSVIVG00027973001
SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (1375 aa)
   •• • 0.524
GSVIVG00024273001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (624 aa)
   •  • 0.501
GSVIVG00014557001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (258 aa)
      • 0.480
GSVIVG00036085001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (1275 aa)
    • • 0.479
GSVIVG00003602001
SubName- Full=Chromosome undetermined scaffold_146, whole genome shotgun sequence; (310 aa)
   •• • 0.410
GSVIVG00014090001
SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (308 aa)
   •• • 0.405
GSVIVG00036653001
SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (293 aa)
      • 0.401

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 943
PF05099140 TerB: Tellurite resistance protein TerB; InterPro: 95.44
cd07311150 terB_like_1 tellurium resistance terB-like protein 94.15
cd07313104 terB_like_2 tellurium resistance terB-like protein 93.37
cd07316106 terB_like_DjlA N-terminal tellurium resistance pro 88.98
PF0373573 ENT: ENT domain; InterPro: IPR005491 This entry re 87.61
cd07316106 terB_like_DjlA N-terminal tellurium resistance pro 87.53
PF05099140 TerB: Tellurite resistance protein TerB; InterPro: 87.1
cd07176111 terB tellurite resistance protein terB. This famil 86.42
cd07311150 terB_like_1 tellurium resistance terB-like protein 86.28
PRK09430267 djlA Dna-J like membrane chaperone protein; Provis 83.82
PF04391188 DUF533: Protein of unknown function (DUF533); Inte 83.82
cd07176111 terB tellurite resistance protein terB. This famil 83.66
cd07313104 terB_like_2 tellurium resistance terB-like protein 83.07
PRK09430267 djlA Dna-J like membrane chaperone protein; Provis 80.87
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein [] Back     alignment and domain information 
Probab=95.44  E-value=0.041  Score=52.40  Aligned_cols=113  Identities=23%  Similarity=0.383  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHH-HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccch
Q 002279          772 EQAFRQQAEVILADGQLTKARIEQLNEVQ-KQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDL  850 (943)
Q Consensus       772 eqAyrqqaeqiL~dG~Lt~akae~L~eiq-~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L  850 (943)
                      ..+++=.+..+.+||.++++..+.+.++. .+.+++++..+.++..+...+-.          ..+..+.      --.|
T Consensus        24 ~a~~~ll~~~a~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~------~~~l   87 (140)
T PF05099_consen   24 EALLALLAAVAKADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQE----------PIDLEEL------LREL   87 (140)
T ss_dssp             HHHHHHHHHHHHTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHH----------CCHHHHH------HHHH
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhc----------cccHHHH------HHHH
Confidence            34455567788899999999999998877 99999999999887765443332          2222222      2235


Q ss_pred             hhhccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCCCHHHHHH
Q 002279          851 DNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARR  900 (943)
Q Consensus       851 ~~~ised~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekAk~  900 (943)
                      .+.++.+.|..+++..+.=+.++|...-.+.+++.++...|+|+.+.-+.
T Consensus        88 ~~~~~~~~r~~ll~~l~~ia~ADG~~~~~E~~~l~~ia~~L~i~~~~~~~  137 (140)
T PF05099_consen   88 RDSLSPEEREDLLRMLIAIAYADGEISPEEQEFLRRIAEALGISEEDFQR  137 (140)
T ss_dssp             CTS--HHHHHHHHHHHHHHCTCTTC-SCCHHHHHHHHHHHCTS-SS----
T ss_pred             HHhhchHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCHHHHhc
Confidence            55566999999999999999999999999999999999999999876554

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1 Back     alignment and domain information
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2 Back     alignment and domain information
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins Back     alignment and domain information
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin Back     alignment and domain information
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins Back     alignment and domain information
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein [] Back     alignment and domain information
>cd07176 terB tellurite resistance protein terB Back     alignment and domain information
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1 Back     alignment and domain information
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional Back     alignment and domain information
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins Back     alignment and domain information
>cd07176 terB tellurite resistance protein terB Back     alignment and domain information
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2 Back     alignment and domain information
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query943
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 78.7 bits (193), Expect = 5e-15
 Identities = 92/645 (14%), Positives = 184/645 (28%), Gaps = 171/645 (26%)

Query: 127 GAMAYAMNAAVPEVAAKRLHDYVTDCND-----PGAVKREDIEAI-ASKYGVSKQDEAFN 180
           G   Y     +       + ++  DC D        + +E+I+ I  SK  VS     F 
Sbjct: 12  GEHQYQYKDILSVFEDAFVDNF--DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 181 AELS---EIYCRFVTSVLPPGGEDL----------RGDEVDKIVQFKKALGIDDPDAAAM 227
             LS   E+  +FV  VL    + L                  ++ +  L  D+   A  
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129

Query: 228 HVEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYV--------STLVFGEASSFLLPWKRV 279
           +V       R +  +  R   +E R A  K + +        + +      S+ +  K  
Sbjct: 130 NVS------RLQPYLKLRQALLELRPA--KNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 280 FKV---TDSQVEI--AIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAED 334
           FK+             + +  ++L      +     D    ++LR   +   L   L   
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS- 240

Query: 335 LFREHTRKLV------EENIVTALSILKSRTRVV---KGVAQVV---------------- 369
             + +   L+            A ++   +  +    K V   +                
Sbjct: 241 --KPYENCLLVLLNVQNAKAWNAFNL-SCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 370 ---EELDKVLAFNNLLISLRQHPNADRFARGVGP--VSLVGGEFDGDRKMDDLKLLYRAY 424
              +E+  +L    L    +  P   R      P  +S++           D    ++  
Sbjct: 298 LTPDEVKSLLL-KYLDCRPQDLP---REVLTTNPRRLSIIAESIRDGLATWD---NWKHV 350

Query: 425 VTDSLSGGRMEESKLAALN--QLRNIFGLGKRESEAII---VDVTSKVYRKRL-GQAVSG 478
             D L+   + ES L  L   + R +F     +  ++      + + +    +    +  
Sbjct: 351 NCDKLT--TIIESSLNVLEPAEYRKMF-----DRLSVFPPSAHIPTILL-SLIWFDVIKS 402

Query: 479 GALEAADSKASFLQSLCEELHFDPQKAS-EIHEEIYRQKLQQCVADGELNDEDVAALLRL 537
             +   +       SL E+    P++++  I   IY +   +   +  L+   V      
Sbjct: 403 DVMVVVNKLHK--YSLVEK---QPKESTISIP-SIYLELKVKLENEYALHRSIVD---HY 453

Query: 538 RVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAH--GLRLTRE 595
            +        +   + D     +  +          G+            H   +     
Sbjct: 454 NIPKTFDSDDLIPPYLD--QYFYSHI----------GH------------HLKNIEHPER 489

Query: 596 AAMSIASKAVRRIFVIY------IKRARAAENRTEAAKEL-------KKLITFNTLVVTE 642
             +       R +F+ +      I+    A N + +           K  I  N      
Sbjct: 490 MTL------FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543

Query: 643 LVADIK------------GESSD------TSEEEPIKEE-EKQTD 668
           LV  I              + +D       +E+E I EE  KQ  
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query943
2h5n_A133 Hypothetical protein PG_1108; SAD, MCSG,PSI, struc 95.65
2ou3_A161 Tellurite resistance protein of COG3793; structura 95.22
2h5n_A133 Hypothetical protein PG_1108; SAD, MCSG,PSI, struc 93.96
2ou3_A161 Tellurite resistance protein of COG3793; structura 93.9
2jxu_A153 TERB, KP-TERB; tellurite resistance protein, plasm 91.39
2jxu_A153 TERB, KP-TERB; tellurite resistance protein, plasm 91.26
1uz3_A102 EMSY protein; chromatin regulator, chromatin regul 89.02
2fmm_E133 Protein EMSY; ENT domain, chromo shadow domain, EM 83.66
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2 Back     alignment and structure
Probab=95.65  E-value=0.074  Score=50.39  Aligned_cols=107  Identities=13%  Similarity=0.183  Sum_probs=86.0

Q ss_pred             hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHccc
Q 002279          769 GLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASV  848 (943)
Q Consensus       769 ~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV  848 (943)
                      .++. .+.=..+++.+||..++++.+++..+..++||+++.+.++++...               +....+...+     
T Consensus        17 ~l~a-~~aLl~~VA~ADG~v~~~E~~~l~~~l~~lgl~~~e~~~l~~~~~---------------~~~~~~~~~~-----   75 (133)
T 2h5n_A           17 ELTA-IIKMAKSMVMADGKIKPAEIAVMTREFMRFGILQDQVDLLLKASD---------------SIEASQAVAL-----   75 (133)
T ss_dssp             HHHH-HHHHHHHHHHTTSCCCHHHHHHHHHHHGGGTCCHHHHHHHHHHHT---------------TSCHHHHHHH-----
T ss_pred             HHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHH---------------hccHHHHHHH-----
Confidence            3444 667778899999999999999999999999999999999998764               1122222221     


Q ss_pred             chhhhccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCCCHHHH
Q 002279          849 DLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKA  898 (943)
Q Consensus       849 ~L~~~ised~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekA  898 (943)
                       + ..++.++|..+.+--+.=+.+||..+-.+.++++++..-|+|+....
T Consensus        76 -~-~~~~~e~r~~ll~~L~~IA~ADG~i~~~E~~lLr~ia~~Lgls~~d~  123 (133)
T 2h5n_A           76 -I-ARMDEERKKYVASYLGVIMASDGDIDDNELALWTLISTLCGLPTMTV  123 (133)
T ss_dssp             -H-HTSCHHHHHHHHHHHHHHSCBTTBCCHHHHHHHHHHHHHHTCCCCCH
T ss_pred             -H-HcCCHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence             2 22568999999999999999999998888899999999999987654
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1 Back     alignment and structure
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2 Back     alignment and structure
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1 Back     alignment and structure
>2jxu_A TERB, KP-TERB; tellurite resistance protein, plasmid, unknown function; NMR {Klebsiella pneumoniae ntuh-k2044} Back     alignment and structure
>2jxu_A TERB, KP-TERB; tellurite resistance protein, plasmid, unknown function; NMR {Klebsiella pneumoniae ntuh-k2044} Back     alignment and structure
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A Back     alignment and structure
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query943
d2ou3a1160 Tellurite resistance protein of COG3793 {Nostoc pu 96.08
d2ou3a1160 Tellurite resistance protein of COG3793 {Nostoc pu 95.6
d1uz3a190 Emsy {Human (Homo sapiens) [TaxId: 9606]} 91.44
>d2ou3a1 a.287.1.1 (A:1-160) Tellurite resistance protein of COG3793 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Back     information, alignment and structure
class: All alpha proteins
fold: TerB-like
superfamily: TerB-like
family: COG3793-like
domain: Tellurite resistance protein of COG3793
species: Nostoc punctiforme pcc 73102 [TaxId: 63737]

Probab=96.08  E-value=0.024  Score=52.17  Aligned_cols=95  Identities=16%  Similarity=0.216  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHh--ccceeeccccccccccccchHHHhhhhhhcccCCChHHHHHHH------------------HhHH
Q 002279          712 RTDLYKTYLLYCL--TGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVH------------------RGLA  771 (943)
Q Consensus       712 r~dLYr~YL~~Cl--sGe~~~~p~G~~i~~~kdqsEf~~LnQLg~ILGL~~kEi~~VH------------------~~la  771 (943)
                      ..+.|=.=|..+.  .|+++             ++|...+.++..-+|++..+...+.                  ....
T Consensus        27 ~~~~~~~~L~~vA~aDG~v~-------------~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (160)
T d2ou3a1          27 DSSIYMKSVLTCAKADGVIS-------------PEEKDWALGFCASWGVADWVIEDLKTYEADEALEEVIARSPQVSMAQ   93 (160)
T ss_dssp             HHHHHHHHHHHHHHSSSCCC-------------HHHHHHHHHHHHHTTCCHHHHHHHHHCCCCSCHHHHHTTCTTGGGCH
T ss_pred             HHHHHHHHHHHHHHhcCCCC-------------HHHHHHHHHHHHHhcccchHHHHHHhhccchhhHHHHHHcCCCHHHH
Confidence            3445544455544  89988             9999999999999999999888774                  3466


Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 002279          772 EQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITT  819 (943)
Q Consensus       772 eqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~  819 (943)
                      ...++.....+++||.+++++.++|.++++.||++++..++|+.-+..
T Consensus        94 ~~ll~~l~~va~aDG~~~~~E~~~l~~ia~~Lgi~~~~~~~l~~~~~~  141 (160)
T d2ou3a1          94 RDILLSAIWVSAADGELHEKEKAKIRKMATILGIKEEIVDQLEQLYYY  141 (160)
T ss_dssp             HHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            678999999999999999999999999999999999999999976654
>d2ou3a1 a.287.1.1 (A:1-160) Tellurite resistance protein of COG3793 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Back     information, alignment and structure
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure