Citrus Sinensis ID: 002284

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940---
Protein Sequence
MHDLVNDLAQWAAGEMYFRMEYISEVNKQQSFSRNLHHLSYIRGDYDGVKRFEDLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSICDQNLTSLKLTNCPKLKYFPEKGLPASLLRLEIKKCPLIEKMCRQDIGPYWHLLIHIPCVLIECSCTVN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHccEEEEEccccccccccccccEEEEEEEEcccccccccccccccccccEEEccccccccccccHHHHHHHHHccccEEEEEEcccccccccccccccccccEEEccccccccccccHHccccccEEEcccccccccccHHccccccccEEEcccccccccccccccccccccccccEEEcccccccHHHcccccccccEEEEccccccccccHHHHccccccccccEEEEEEEcccccccccccccHHHHHcccccccccccEEEEEcccccccccccccccccEEEEEEEccccccccccccccccccEEEEccccccEEEcccccccccccccccccEEEEcccccccccccccccccccccccccEEEEcccccccccccccccccEEEEEEcccccccccEEEEcccccEEEcccccccccccccccccccccccccccccccccccEEEEccccccccccHHHHccccccccEEEEEEcccccccccHHHHcccccccccEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEccccccccccccccccccccccEEEEEccccccccccccccccccEEEEEcccccccccHHccccccccccccccEEEEEccccccccccccHHHHHHHHHHcccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEEcccccEEccccccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEcccccccccccccccccccccccccEEEEEccccccccccccccccccEEEEEccccccccccccccccccEEEEEccHHHHHccccccccccccccccccEEEccEEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHcccEEEEcccccccccccccccEEEEEEEccccccccccccHHcHHccEEEEEccccccccccHHHHHHHHHHHHcEEEEEEEcccccccccccHHcccHEEEEEccccccccccHHHHHHHHHHHHHHcccHHHHHccHHHHccccccEEEccccccHHcccccccccccccEccEEEEcccccccHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHccccccEEEEEEccccccccccccHHHHHHHHHccccccccEEEEEcccccccccHccccccHccEEEEEcccccccccccccccccccEEEEcccccEEEccHHHcccccccccccccEEEEcccHHHHHHcccccccHccccccccEEEEcccHHHHcccHHHHHHHHHcEHccccccccHcccccccccccEccccccccccccHHHHccccccccccccccccccccccccHccccHccccccccccccccccEEEEccccccccccHHccccccccccccEEEEcccccHHcccccccccccccEEEEcccccccccccccccccccEEEEcccccccccccHcccccccccEEEEEcccccccccccccccccccEEEEcccccHHcccHHcccccccccccHHccccccccccHHHccHHcccccHHHHcccccccccccEEEEccccccccccccccccccccEEEEcccccHccccccccccccccEEEEccccccccccccccccccccEEEEcccccHccccccccccccccEEEEccccccccccccccccccccEEEEccccccccccHHccccccccccEEEEcccccccccccccccccHccccccccEEEEcccccHcccccccccccccEEEEcccccHcccccccccccccEEEEcccHHHHHHHccccccccccEEEccEEEEcccEEEc
Coil and Loop (DISEMBL)
MHDLVNDLAQWAAGEMYFRMEYISEVNkqqsfsrnLHHLSYirgdydgvkrfedlYDIQHLRTLLpvtllssrpgylarsILPRLLKLQRLRVFSLRGYlisevpdsigdlsYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMgnliklhhlnnsntdsleemplgiGKLTCLLTLCNfvvgkdsgsglRELKLLTHLCGtlnisklenvKYVGDAMEAQLDGKKNLKVLMLEWTRstnglssreaqTEKGVLdmlkphrsleqfcisgfggkkfptwlgySLFSNlvtlkfqdcsmctsmpsvgqlpslkhlevRGMSRVkrlgsefygndspipfpcletlhFAEMQeweewiphgcsqeiegfpklRELHIVRCSklqgtlpthLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDIsnqmflggplklqlpkldeldiSIIIDGLSYIWQNETQLLQDIATLKRlkiercpklqfleeedQWQFGLSFRLEHLElincqdleklpkslLSLSsltemrihncsslvsfpeavlpsqlRVISIWdsgalkflpeawmldnnssleilDIRHCHLLTYiagvqlppslkqleiyncdnlrtltaeegihssrrhtsllecleihscpsltcliSKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVScenlkmlphgLHKLWHlqeidiqdcenlvsfpeggllsAKLKRLVIYGCKKLealpegmhnlSSLQyltiggvpsllcftedglfptnlhslEIDGMKIWKSLMqlggfhrytSLRRLAisgcdedmvsfpledirlgttlpacltqleifnfpnlerlsssicdqnltslkltncpklkyfpekglpasLLRLEikkcpliekmcrqdigpywhLLIHIPCVLIECSCTVN
Flexible Loop (DISEMBL)
MHDLVNDLAQWAAGEMYFRMEYISEVNKQQSFSRNLHHLSYIRGDYDGVKRFEDLYDIQHLRTLlpvtllssrpGYLARSILPRLLKLQRLRVFSLRGylisevpdsigdlSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTrstnglssreaqTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSvgqlpslkhleVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSICDQNLTSLkltncpklkyfpekglpasLLRLEIKKCPLIEKMCRQDIGPYWHLLIHIPCVLIECSCTVN
Low Complexity Region (SEG)
MHDLVNDLAQWAAGEMYFRMEYISEVNKQQSFSRNLHHLSYIRGDYDGVKRFEDLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFlggplklqlpklDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKsllslsslTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSICDQNLTSLKLTNCPKLKYFPEKGLPASLLRLEIKKCPLIEKMCRQDIGPYWHLLIHIPCVLIECSCTVN
Disordered region (IsUnstruct)
****VNDLAQWAAGEMYFRMEYISEVNKQQSFSRNLHHLSYIRGDYDGVKRFEDLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTR****************LDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSICDQNLTSLKLTNCPKLKYFPEKGLPASLLRLEIKKCPLIEKMCRQDIGPYWHLLIHIPCVLIECSCT**
Disordered Region (DISOPRED)
MHDLVNDLAQWAAGEMYFRMEYISE*****SFSRNLHHLSYIRGDYDGVKRFEDLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNG*****AQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKF*********NSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAE*****SRRHTSLLECLEIHSCPSLTCLIS**EL**ALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQ**GF*RYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSICDQNLTSLKLTNCPKLKYFPEKGLPASLLRLEIKKCPLIEKMCRQDIGPYWHLLIHIPCVLIECSCTVN
Disordered Region (DISEMBL)
MHDLVNDLAQWAAGEMYFRMEYISEVNKQQSFSRNLHHLSYIRGDYDGVKRFEDLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSICDQNLTSLKLTNCPKLKYFPEKGLPASLLRLEIKKCPLIEKMCRQDIGPYWHLLIHIPCVLIECSCTVN
Disordered Region (DISPRO)
*HDLVNDLAQWAAGEMYFRMEYISEVNKQQSFSRNLHHLSYIRGDYDGVKRFEDLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSICDQNLTSLKLTNCPKLKYFPEKGLPASLLRLEIKKCPLIEKMCRQDIGPYWHLLIHIPCVLIECSCTVN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHDLVNDLAQWAAGEMYFRMEYISEVNKQQSFSRNLHHLSYIRGDYDGVKRFEDLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSICDQNLTSLKLTNCPKLKYFPEKGLPASLLRLEIKKCPLIEKMCRQDIGPYWHLLIHIPCVLIECSCTVN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	943	2.2.26 [Sep-21-2011]
Q9LRR5	1424	Putative disease resistan	yes	no	0.917	0.607	0.308	2e-85
Q9LRR4	1054	Putative disease resistan	no	no	0.536	0.480	0.346	3e-71
Q7XA42	979	Putative disease resistan	N/A	no	0.492	0.473	0.307	7e-41
Q7XBQ9	970	Disease resistance protei	N/A	no	0.448	0.436	0.336	7e-41
Q7XA39	988	Putative disease resistan	N/A	no	0.471	0.450	0.313	7e-41
Q7XA40	992	Putative disease resistan	N/A	no	0.468	0.445	0.322	6e-38
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.391	0.283	0.281	1e-15
P23799	630	Putative adenylate cyclas	N/A	no	0.398	0.596	0.228	3e-09
Q38834	852	Disease resistance RPP13-	no	no	0.276	0.306	0.284	1e-08
P26337	630	Putative adenylate cyclas	N/A	no	0.391	0.585	0.225	9e-08

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  318 bits (814), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 310/1005 (30%), Positives = 465/1005 (46%), Gaps = 140/1005 (13%)

Query: 1    MHDLVNDLAQWAAGEMYFRME--YISEVNKQQSFSRNLHHLSYIRGDYDGVKRFEDLYDI 58
            MHDL+NDLA+  +G+  FR+E   I E+           H S+ R   D    F  +   
Sbjct: 487  MHDLMNDLAKAVSGDFCFRLEDDNIPEI------PSTTRHFSFSRSQCDASVAFRSICGA 540

Query: 59   QHLRTLLPVTLLSSRPG-YLARSIL-PRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRY 116
            + LRT+LP    +S     L   +L P L  L  LR+ SL  Y I+ +P S+  L  LRY
Sbjct: 541  EFLRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSLSHYQITNLPKSLKGLKLLRY 600

Query: 117  LNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMP 176
            L+LS T+I+ LPE V  L NL TLLL  CR+L      +  LI L  L+   T  L EMP
Sbjct: 601  LDLSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGT-PLVEMP 659

Query: 177  LGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGK 236
             GI KL  L  L NFV+G+ SG+GL ELK L+HL GTL IS+L+NV +  +A +A L  K
Sbjct: 660  PGIKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTLRISELQNVAFASEAKDAGLKRK 719

Query: 237  KNLKVLMLEWTRSTNGLSSRE----AQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLG 292
              L  L+L+WT   +G         A  +K VL ML+PH  L+ FCI  + G  FP WLG
Sbjct: 720  PFLDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQGGAFPKWLG 779

Query: 293  YSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFY---GNDSPIPF 349
             S F  + ++    C++C S+P VGQLPSLK+L +   + ++++G +F+    N   +PF
Sbjct: 780  DSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGENNSRGVPF 839

Query: 350  PCLETLHFAEMQEWEEWIPHGCSQEIEG-FPKLRELHIVRCSKLQGTLPTHLTLLDILVV 408
              L+ L F  M  W+EWI   C +  +G FP L++L I RC  L+   P           
Sbjct: 840  QSLQILKFYGMPRWDEWI---CPELEDGIFPCLQKLIIQRCPSLRKKFP----------- 885

Query: 409  QNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISI 468
                 LP+  ++ I  C     R+ +  E+   + ++N      P    +P +   ++S 
Sbjct: 886  ---EGLPSSTEVTISDCP---LRAVSGGENSFRRSLTN--IPESP--ASIPSMSRRELSS 935

Query: 469  II-----DGLSYI---WQNETQLLQDIATLKRLKIERCPKLQFLEEEDQW--QFG-LSFR 517
                   D  +     + + +Q   D        +   PK +  E+ DQ+  Q G L  +
Sbjct: 936  PTGNPKSDASTSAQPGFASSSQSNDDNEVTSTSSLSSLPKDRQTEDFDQYETQLGSLPQQ 995

Query: 518  LEHLELINCQ-------------------DLEKLPK---SLLSLSSLTEMRIHNCSSLVS 555
             E   +I+ +                    L   PK   S+L  SS  +   +   S V 
Sbjct: 996  FEEPAVISARYSGYISDIPSTLSPYMSRTSLVPDPKNEGSILPGSSSYQYHQYGIKSSVP 1055

Query: 556  FP---EAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAG--VQL 610
             P   EA+ PSQ       D   LK    + +++   +L+ L I  C  LT +     + 
Sbjct: 1056 SPRSSEAIKPSQYDDDET-DMEYLKVTDISHLMELPQNLQSLHIDSCDGLTSLPENLTES 1114

Query: 611  PPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELR--AAL 668
             P+L +L I  C +L +     G H      + L+ L I  C  L    S    R  + L
Sbjct: 1115 YPNLHELLIIACHSLESFP---GSHP----PTTLKTLYIRDCKKLNFTESLQPTRSYSQL 1167

Query: 669  DYLVVG-------NLPQA----LKFLSIWHCSKLESIVERL---DNKISLEVIEIVSCEN 714
            +YL +G       N P +    L+ LSI  C   ++        D++I+LE +EI  C N
Sbjct: 1168 EYLFIGSSCSNLVNFPLSLFPKLRSLSIRDCESFKTFSIHAGLGDDRIALESLEIRDCPN 1227

Query: 715  LKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLS 774
            L+                        +FP+GGL + KL  +++  CKKL+ALPE +  L+
Sbjct: 1228 LE------------------------TFPQGGLPTPKLSSMLLSNCKKLQALPEKLFGLT 1263

Query: 775  SLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGC 834
            SL  L I   P +      G FP+NL +L I         ++  G     +LR L I G 
Sbjct: 1264 SLLSLFIIKCPEIETIPGGG-FPSNLRTLCISLCDKLTPRIEW-GLRDLENLRNLEIDGG 1321

Query: 835  DEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSIC--DQNLTSLKLTNCPKLKY 892
            +ED+ SFP E +     LP  +  L I  F NL+ L+       + + +++++ C KL+ 
Sbjct: 1322 NEDIESFPEEGL-----LPKSVFSLRISRFENLKTLNRKGFHDTKAIETMEISGCDKLQI 1376

Query: 893  FPEKGLPASLLRLEIKKCPLIEKMCRQDIGPYWHLLIHIPCVLIE 937
              ++ LP  L  L I  C L+ +   +    ++ +L +IP V I+
Sbjct: 1377 SIDEDLPP-LSCLRISSCSLLTETFAEVETEFFKVL-NIPYVEID 1419

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score =  270 bits (691), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 196/566 (34%), Positives = 295/566 (52%), Gaps = 60/566 (10%)

Query: 1    MHDLVNDLAQWAAGEMYFRMEYISEVNKQQSFSRNLHHLSYIRGDYDGVKRFEDLYDIQH 60
            MHD +N+LAQ+A+GE   + E   ++      S    +LSY+R +Y     FE L +++ 
Sbjct: 492  MHDFINELAQFASGEFSSKFEDGCKLQ----VSERTRYLSYLRDNYAEPMEFEALREVKF 547

Query: 61   LRTLLPVTLL-SSRPGYLARSILPRLL-KLQRLRVFSLRGYLISEVP-DSIGDLSYLRYL 117
            LRT LP++L  SSR   L + +  +LL  L RLRV SL  Y I+ +P D   ++S+ R+L
Sbjct: 548  LRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSLSHYKIARLPPDFFKNISHARFL 607

Query: 118  NLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPL 177
            +LS T++  LP+S+  +YNL TLLL  C  LK+   D+ NLI L +L+   T  L +MP 
Sbjct: 608  DLSRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGT-KLRQMPR 666

Query: 178  GIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKK 237
              G+L  L TL  F V    GS + EL  L  L G L I +L+ V  V DA EA L+ KK
Sbjct: 667  RFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKLKIVELQRVVDVADAAEANLNSKK 726

Query: 238  NLKVLMLEW----TRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGY 293
            +L+ +   W    + S N  +    Q E  V + L+PHR +E+  I  + G++FP WL  
Sbjct: 727  HLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRRFPDWLSD 786

Query: 294  SLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGN------DSPI 347
              FS +V ++ ++C  CTS+PS+GQLP LK L + GM  ++ +G +FY +          
Sbjct: 787  PSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIGRKFYFSDQQLRDQDQQ 846

Query: 348  PFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILV 407
            PF  LETL F  + +W+EW+    ++  + FP L++L I+RC +L GTLPT         
Sbjct: 847  PFRSLETLRFDNLPDWQEWLDVRVTRG-DLFPSLKKLFILRCPELTGTLPTF-------- 897

Query: 408  VQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDIS 467
                  LP+L  L I +C  + ++   D     Y++                 L  L I 
Sbjct: 898  ------LPSLISLHIYKCGLLDFQP--DHHEYSYRN-----------------LQTLSIK 932

Query: 468  IIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQ 527
               D L     N        A L +L++++C  L  LE  ++   G +  L +L + +CQ
Sbjct: 933  SSCDTLVKFPLNH------FANLDKLEVDQCTSLYSLELSNEHLRGPN-ALRNLRINDCQ 985

Query: 528  DLEKLPKSLLSLSSLTEMRIHNCSSL 553
            +L+ LPK L +L    ++ I NC  L
Sbjct: 986  NLQLLPK-LNALPQNLQVTITNCRYL 1010

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score =  169 bits (429), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 171/557 (30%), Positives = 256/557 (45%), Gaps = 93/557 (16%)

Query: 13  AGEMYFRMEYISEVNKQQSFSRNLH--HLSYIRGDYDGVKRFEDLYDIQHLRTLLPVTLL 70
           +G+ YF+M  +        FS N    ++  I  +YDG                    ++
Sbjct: 465 SGKTYFKMHDLIHDLATSLFSANTSSSNIREINANYDGY-------------------MM 505

Query: 71  SSRPGYLARSILPRLL-KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGT-QIRTLP 128
           S     +  S  P LL K   LRV +LR   ++++P SIGDL +LRYL+LSG  +IR LP
Sbjct: 506 SIGFAEVVSSYSPSLLQKFVSLRVLNLRNSNLNQLPSSIGDLVHLRYLDLSGNFRIRNLP 565

Query: 129 ESVNKLYNLHTLLLEGCRELK---KKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCL 185
           + + KL NL TL L  C  L    K+ + +G+L  L      +  SL   P  IG LTCL
Sbjct: 566 KRLCKLQNLQTLDLHYCDSLSCLPKQTSKLGSLRNLL----LDGCSLTSTPPRIGLLTCL 621

Query: 186 LTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLE 245
            +L  FV+GK  G  L ELK L +L G+++I+KL+ VK   DA EA L  K NL  L L 
Sbjct: 622 KSLSCFVIGKRKGHQLGELKNL-NLYGSISITKLDRVKKDTDAKEANLSAKANLHSLCLS 680

Query: 246 WTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQ 305
           W    +G    +++    VL+ LKPH +L+   I+GFGG + P W+  S+  N+V+++ +
Sbjct: 681 W--DLDGKHRYDSE----VLEALKPHSNLKYLEINGFGGIRLPDWMNQSVLKNVVSIRIR 734

Query: 306 DCSMCTSMPSVGQLPSLKHLEVR-GMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWE 364
            C  C+ +P  G+LP L+ LE+  G + V+ +      N  P  FP L  L   +    +
Sbjct: 735 GCENCSCLPPFGELPCLESLELHTGSADVEYVED----NVHPGRFPSLRKLVIWDFSNLK 790

Query: 365 EWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDR 424
             +     ++   FP L E+    C               + V+   +S+  L       
Sbjct: 791 GLLKMEGEKQ---FPVLEEMTFYWCP--------------MFVIPTLSSVKTL------- 826

Query: 425 CKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLL 484
             KV+    T     + + ISN           L  L  LDIS  ++  S       ++ 
Sbjct: 827 --KVIVTDAT-----VLRSISN-----------LRALTSLDISDNVEATSL----PEEMF 864

Query: 485 QDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLP-KSLLSLSSLT 543
           + +A LK LKI     L+ L             L+ L+   C  LE LP + +  L+SLT
Sbjct: 865 KSLANLKYLKISFFRNLKELPT----SLASLNALKSLKFEFCDALESLPEEGVKGLTSLT 920

Query: 544 EMRIHNCSSLVSFPEAV 560
           E+ + NC  L   PE +
Sbjct: 921 ELSVSNCMMLKCLPEGL 937

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score =  169 bits (429), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 161/478 (33%), Positives = 228/478 (47%), Gaps = 55/478 (11%)

Query: 82  LPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLL 141
           LP L K   LRV +L     +++P SIGDL +LRYLNL G+ +R+LP+ + KL NL TL 
Sbjct: 519 LPPLEKFISLRVLNLGDSTFNKLPSSIGDLVHLRYLNLYGSGMRSLPKQLCKLQNLQTLD 578

Query: 142 LEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGL 201
           L+ C +L     +   L  L +L    + SL  MP  IG LTCL TL  FVVG+  G  L
Sbjct: 579 LQYCTKLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVVGRKKGYQL 638

Query: 202 RELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTE 261
            EL  L +L G++ IS LE VK   DA EA L  K NL  L + W      +   E   E
Sbjct: 639 GELGNL-NLYGSIKISHLERVKNDKDAKEANLSAKGNLHSLSMSWNNFGPHIYESE---E 694

Query: 262 KGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQLPS 321
             VL+ LKPH +L    I GF G   P W+ +S+  N+V++   +   C+ +P  G LP 
Sbjct: 695 VKVLEALKPHSNLTSLKIYGFRGIHLPEWMNHSVLKNIVSILISNFRNCSCLPPFGDLPC 754

Query: 322 LKHLEVR----GMSRVKRLGSEFY-GNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIE 376
           L+ LE+      +  V+ +  + + G  + I FP L  L   +    +  +     +  E
Sbjct: 755 LESLELHWGSADVEYVEEVDIDVHSGFPTRIRFPSLRKLDIWDFGSLKGLLK---KEGEE 811

Query: 377 GFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDC 436
            FP L E+ I  C  L  TL ++L               AL  LRI  C   V    T  
Sbjct: 812 QFPVLEEMIIHECPFL--TLSSNLR--------------ALTSLRI--CYNKV---ATSF 850

Query: 437 ESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIE 496
             +++K+++N  +L      +   L EL  S                L  +  LK LKI+
Sbjct: 851 PEEMFKNLANLKYLTIS---RCNNLKELPTS----------------LASLNALKSLKIQ 891

Query: 497 RCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLV 554
            C  L+ L EE     GLS  L  L + +C  L+ LP+ L  L++LT ++I  C  L+
Sbjct: 892 LCCALESLPEEGLE--GLS-SLTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLI 946

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score =  169 bits (429), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 165/526 (31%), Positives = 239/526 (45%), Gaps = 81/526 (15%)

Query: 77  LARSILPRLLK-LQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLY 135
           +  S  P LLK    LRV +L    + ++P SIGDL +LRYL+LS    R+LPE + KL 
Sbjct: 514 VVSSYSPSLLKKFVSLRVLNLSYSKLEQLPSSIGDLLHLRYLDLSCNNFRSLPERLCKLQ 573

Query: 136 NLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGK 195
           NL TL +  C  L         L  L HL       L   P  IG LTCL TL  F+VG 
Sbjct: 574 NLQTLDVHNCYSLNCLPKQTSKLSSLRHLVVDGC-PLTSTPPRIGLLTCLKTLGFFIVGS 632

Query: 196 DSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSS 255
             G  L ELK L +LCG+++I+ LE VK   DA EA L  K NL+ L + W    N   +
Sbjct: 633 KKGYQLGELKNL-NLCGSISITHLERVKNDTDA-EANLSAKANLQSLSMSWD---NDGPN 687

Query: 256 REAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPS 315
           R    E  VL+ LKPH +L+   I  FGG +FP+W+ +S+   +++++ + C  C  +P 
Sbjct: 688 RYESKEVKVLEALKPHPNLKYLEIIAFGGFRFPSWINHSVLEKVISVRIKSCKNCLCLPP 747

Query: 316 VGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEI 375
            G+LP L++LE++  S                          AE++  EE   H      
Sbjct: 748 FGELPCLENLELQNGS--------------------------AEVEYVEEDDVHSRFSTR 781

Query: 376 EGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTD 435
             FP L++L I     L+G          ++  +     P L ++ I  C   V+     
Sbjct: 782 RSFPSLKKLRIWFFRSLKG----------LMKEEGEEKFPMLEEMAILYCPLFVF----- 826

Query: 436 CESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKI 495
                            P    + KL E+  +    GLS I         +++TL  L+I
Sbjct: 827 -----------------PTLSSVKKL-EVHGNTNTRGLSSI--------SNLSTLTSLRI 860

Query: 496 ERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVS 555
               +   L EE    F     LE L   + ++L+ LP SL SL++L  ++I +C SL S
Sbjct: 861 GANYRATSLPEE---MFTSLTNLEFLSFFDFKNLKDLPTSLTSLNALKRLQIESCDSLES 917

Query: 556 FPEAVLP--SQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHC 599
           FPE  L   + L  + +     LK LPE   L + ++L  L +  C
Sbjct: 918 FPEQGLEGLTSLTQLFVKYCKMLKCLPEG--LQHLTALTNLGVSGC 961

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score =  160 bits (404), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 156/483 (32%), Positives = 226/483 (46%), Gaps = 41/483 (8%)

Query: 77  LARSILPRLLK-LQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLY 135
           +  S  P L K    LRV +L      ++P S+GDL +LRYL+LSG +I +LP+ + KL 
Sbjct: 522 VVSSYSPSLFKRFVSLRVLNLSNSEFEQLPSSVGDLVHLRYLDLSGNKICSLPKRLCKLQ 581

Query: 136 NLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGK 195
           NL TL L  C+ L         L  L +L   +   L  MP  IG LTCL TL  FVVG+
Sbjct: 582 NLQTLDLYNCQSLSCLPKQTSKLCSLRNLVLDHC-PLTSMPPRIGLLTCLKTLGYFVVGE 640

Query: 196 DSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSS 255
             G  L EL+ L +L G ++I+ LE VK   +A EA L  K NL  L + W R      +
Sbjct: 641 RKGYQLGELRNL-NLRGAISITHLERVKNDMEAKEANLSAKANLHSLSMSWDR-----PN 694

Query: 256 REAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPS 315
           R    E  VL+ LKPH +L+   I  F G   P W+ +S+  N+V++    C  C+ +P 
Sbjct: 695 RYESEEVKVLEALKPHPNLKYLEIIDFCGFCLPDWMNHSVLKNVVSILISGCENCSCLPP 754

Query: 316 VGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLH---FAEMQEWEEWIPHGCS 372
            G+LP L+ LE++  S V+    E  G  +   FP L  LH   F  ++  +        
Sbjct: 755 FGELPCLESLELQDGS-VEVEYVEDSGFLTRRRFPSLRKLHIGGFCNLKGLQRM------ 807

Query: 373 QEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRS 432
           +  E FP L E+ I  C        + +  L+I    +   L ++  L      K+    
Sbjct: 808 KGAEQFPVLEEMKISDCPMFVFPTLSSVKKLEIWGEADAGGLSSISNLSTLTSLKIFSNH 867

Query: 433 T-TDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLK 491
           T T    +++K++ N ++L       L  L EL  S                L  +  LK
Sbjct: 868 TVTSLLEEMFKNLENLIYLSVSF---LENLKELPTS----------------LASLNNLK 908

Query: 492 RLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCS 551
            L I  C  L+ L EE     GLS  L  L + +C  L+ LP+ L  L++LT ++I  C 
Sbjct: 909 CLDIRYCYALESLPEEGLE--GLS-SLTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCP 965

Query: 552 SLV 554
            L+
Sbjct: 966 QLI 968

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 123/437 (28%), Positives = 186/437 (42%), Gaps = 68/437 (15%)

Query: 515 SFRLEHLE--LINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWD 572
           +F+ E+L   ++    LEKL +  L L SL EM +   ++L   P+  L   L  + +  
Sbjct: 586 TFKAEYLVNLIMKYSKLEKLWEGTLPLGSLKEMNLRYSNNLKEIPDLSLAINLEELDLVG 645

Query: 573 SGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTA-- 630
             +L  LP +  + N + L  LD+  C  L          SL+ L +  C NLR   A  
Sbjct: 646 CKSLVTLPSS--IQNATKLIYLDMSDCKKLESFPTDLNLESLEYLNLTGCPNLRNFPAIK 703

Query: 631 ---EEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNL-------PQAL 680
               +      R+  ++E           C  +KN L A LDYL            P+ L
Sbjct: 704 MGCSDVDFPEGRNEIVVE----------DCFWNKN-LPAGLDYLDCLTRCMPCEFRPEQL 752

Query: 681 KFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLV 740
            FL++    K E + E + +  SLE +++   ENL  +P  L K   L+ + + +C++LV
Sbjct: 753 AFLNV-RGYKHEKLWEGIQSLGSLEGMDLSESENLTEIPD-LSKATKLESLILNNCKSLV 810

Query: 741 SFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNL 800
           + P       +L RL +  C  LE LP  + NLSSL+ L + G  SL  F    L  TN+
Sbjct: 811 TLPSTIGNLHRLVRLEMKECTGLEVLPTDV-NLSSLETLDLSGCSSLRSFP---LISTNI 866

Query: 801 HSLEIDGMKIWKSLMQLGGFHRY--------------------TSLRRLAISGCDEDMVS 840
             L ++   I +    +G  HR                     +SL  L +SGC   + S
Sbjct: 867 VWLYLENTAIEEIPSTIGNLHRLVRLEMKKCTGLEVLPTDVNLSSLETLDLSGCS-SLRS 925

Query: 841 FPL--EDIRLGTTLPACLTQLEIFNFPNLERLSSSICDQNLTSLKLTNCPKLKYFPEK-G 897
           FPL  E I+        L    I   P+L + +      NL +LKL NC  L   P   G
Sbjct: 926 FPLISESIKW-----LYLENTAIEEIPDLSKAT------NLKNLKLNNCKSLVTLPTTIG 974

Query: 898 LPASLLRLEIKKCPLIE 914
               L+  E+K+C  +E
Sbjct: 975 NLQKLVSFEMKECTGLE 991

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|P23799|ESAG8_TRYBB Putative adenylate cyclase regulatory protein OS=Trypanosoma brucei brucei GN=ESAG8 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 105/460 (22%), Positives = 187/460 (40%), Gaps = 84/460 (18%)

Query: 484 LQDIATLKRLKIERCPKLQFLE-------------------EEDQW--QFGLSFRLEHLE 522
           L+D+  L+ L +  C  L+  E                     D W    GL   L HLE
Sbjct: 130 LRDLEALEDLDLSECANLELRELMVVLTLRNLRKLRMKRTMVNDMWCSSIGLLKFLVHLE 189

Query: 523 LINCQDLEKLPKSLLSLSSLTEMRIHNCSSLV-SFPEAVLPSQLRVISIWDSGALKFLPE 581
           +   + +  +   L  L +L  + + NC ++   F +     QL  +S+  +       +
Sbjct: 190 VDGSRGVTDIT-GLFRLKTLEALSLDNCINITKGFDKICALPQLTSLSLCQTNVTD--KD 246

Query: 582 AWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHT 641
              +  +  L++LDI  CH +T +  +    SL++L +  C N+     E    S+ R  
Sbjct: 247 LRCIHPDGKLKMLDISSCHEITDLTAIGGVRSLEKLSLSGCWNVTKGLEELCKFSNLREL 306

Query: 642 SLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESI--VERLD 699
            +  CL + S   L  LI+                   LK LS+ +C   + +  +ERL 
Sbjct: 307 DISGCLVLGSAVVLKNLIN-------------------LKVLSVSNCKNFKDLNGLERL- 346

Query: 700 NKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLV------------------- 740
             ++LE + +  C  +  L   +  L +L+E+DI  CE+LV                   
Sbjct: 347 --VNLEKLNLSGCHGVSSLGF-VANLSNLKELDISGCESLVCFDGLQDLNNLEVLYLRDV 403

Query: 741 -SFPEGGLLS--AKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFP 797
            SF   G +   +K++ L + GC+++ +L  G+  L  L+ L++ G   ++ F  D ++ 
Sbjct: 404 KSFTNVGAIKNLSKMRELDLSGCERITSLS-GLETLKGLEELSLEGCGEIMSF--DPIW- 459

Query: 798 TNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLT 857
            +L+ L +  +    +L  L G    T L  + + GC +     P+ ++R       C+ 
Sbjct: 460 -SLYHLRVLYVSECGNLEDLSGLQCLTGLEEMYLHGCRKCTNFGPIWNLR-----NVCV- 512

Query: 858 QLEIFNFPNLERLSSSICDQNLTSLKLTNCPKLKYFPEKG 897
            LE+    NL+ LS   C   L  L L  C ++      G
Sbjct: 513 -LELSCCENLDDLSGLQCLTGLEELYLIGCEEITTIGVVG 551

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma brucei brucei (taxid: 5702)

>sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 127/302 (42%), Gaps = 41/302 (13%)

Query: 1   MHDLVNDLAQWAAGEMYFRMEYISEVNKQQSFSR----NLHHLSYIRGDYDGVKRFEDLY 56
           +HD+V DL              + ++ K+ SFS     N  HL  I G++D     E   
Sbjct: 487 IHDMVRDL--------------VIDIAKKDSFSNPEGLNCRHLG-ISGNFD-----EKQI 526

Query: 57  DIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYL----ISEVPDSIGDLS 112
            + H    +  T  +     L   +  +    + LRV  +   +    +SE+ D I  L 
Sbjct: 527 KVNHKLRGVVSTTKTGEVNKLNSDLAKKFTDCKYLRVLDISKSIFDAPLSEILDEIASLQ 586

Query: 113 YLRYLNLSGTQ-IRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDS 171
           +L  L+LS T  +   P S+  L+NL  L    C+ LK+    +    KL  L+ +N  S
Sbjct: 587 HLACLSLSNTHPLIQFPRSMEDLHNLQILDASYCQNLKQLQPCIVLFKKLLVLDMTNCGS 646

Query: 172 LEEMPLGIGKLTCLLTLCNFVVGK-DSGSGLRELKLLTHLCGTLNISKLENVKYVGDAM- 229
           LE  P GIG L  L  L  F   + ++G  L E+K LT      N+ KL      GD + 
Sbjct: 647 LECFPKGIGSLVKLEVLLGFKPARSNNGCKLSEVKNLT------NLRKLGLSLTRGDQIE 700

Query: 230 EAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPT 289
           E +LD   NL  LM   + S N   S        + D L P   L +  +  + GK  P+
Sbjct: 701 EEELDSLINLSKLM---SISINCYDSYGDDLITKI-DALTPPHQLHELSLQFYPGKSSPS 756

Query: 290 WL 291
           WL
Sbjct: 757 WL 758

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P26337|ESA8C_TRYEQ Putative adenylate cyclase regulatory protein OS=Trypanosoma equiperdum GN=ESAG8C PE=2 SV=1

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 102/453 (22%), Positives = 183/453 (40%), Gaps = 84/453 (18%)

Query: 484 LQDIATLKRLKIERCPKLQFLE-------------------EEDQW--QFGLSFRLEHLE 522
           L+D+  L+ L +  C  L+  E                     D W    GL   L HLE
Sbjct: 130 LRDLEALEDLDLSECANLELRELMVVLTLRNLRKLRMKRTMVNDMWCSSIGLLKFLVHLE 189

Query: 523 LINCQDLEKLPKSLLSLSSLTEMRIHNCSSLV-SFPEAVLPSQLRVISIWDSGALKFLPE 581
           +   + +  +   L  L +L  + + +C ++   F +     QL  +S+  +       +
Sbjct: 190 VDGSRGVTDIT-GLCRLKTLEALSLDSCINITKGFDKICALPQLTSLSLCQTNVTD--KD 246

Query: 582 AWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHT 641
              +  +  L++L    CH +T +  +    SL++L +  C N+     E    S+ R  
Sbjct: 247 LRCIHPDGKLKVLRYSSCHEITDLTAIGGMRSLEKLSLSGCWNVTKGLEELCKFSNLREL 306

Query: 642 SLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESI--VERLD 699
            +  CL + S   L  LI+                   LK LS+ +C   + +  +ERL 
Sbjct: 307 DISGCLVLGSAVVLKNLIN-------------------LKVLSVSNCKNFKDLNGLERL- 346

Query: 700 NKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLV------------------- 740
             ++L+ + +  C  +  L   +  L +L+E+DI  CE+LV                   
Sbjct: 347 --VNLDKLNLSGCHGVSSLGF-VANLSNLKELDISGCESLVCFDGLQDLNNLEVLYLRDV 403

Query: 741 -SFPEGGLLS--AKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFP 797
            SF   G +   +K++ L + GC+++ +L  G+  L  L+ L++ G   ++ F  D ++ 
Sbjct: 404 KSFTNVGAIKNLSKMRELDLSGCERITSLS-GLETLKGLEELSLEGCGEIMSF--DPIW- 459

Query: 798 TNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLT 857
            +LH L +  +    +L  L G    T L  L + GC +     P+ ++R       C+ 
Sbjct: 460 -SLHHLRVLYVSECGNLEDLSGLEGITGLEELYLHGCRKCTNFGPIWNLR-----NVCVV 513

Query: 858 QLEIFNFPNLERLSSSICDQNLTSLKLTNCPKL 890
           +L      NLE LS   C   L  L L  C ++
Sbjct: 514 ELSC--CENLEDLSGLQCLTGLEELYLIGCEEI 544

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma equiperdum (taxid: 5694)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	943
284026888	1424	CC-NBS-LRR protein [Quercus suber]	0.928	0.615	0.414	1e-169
400131587	1388	FB_MR5 [Malus x robusta]	0.909	0.618	0.412	1e-161
225449649	1418	PREDICTED: putative disease resistance p	0.939	0.624	0.402	1e-145
356554923	1399	PREDICTED: putative disease resistance R	0.907	0.611	0.381	1e-145
224059584	1418	cc-nbs-lrr resistance protein [Populus t	0.932	0.619	0.381	1e-138
147766392	1471	hypothetical protein VITISV_007674 [Viti	0.900	0.577	0.373	1e-137
359487424	1453	PREDICTED: putative disease resistance R	0.927	0.602	0.370	1e-136
359495024	1390	PREDICTED: putative disease resistance p	0.918	0.623	0.377	1e-135
359487225	1373	PREDICTED: putative disease resistance R	0.910	0.625	0.374	1e-134
359495026	2204	PREDICTED: uncharacterized protein LOC10	0.903	0.386	0.378	1e-133

>gi|284026888|gb|ADB66335.1| CC-NBS-LRR protein [Quercus suber]

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 405/976 (41%), Positives = 544/976 (55%), Gaps = 100/976 (10%)

Query: 1    MHDLVNDLAQWAAGEMYFRMEYISEVNKQQSFSRNLHHLSYIRGDYDGVKRFEDLYDIQH 60
            MHDL+ DLAQW AG  YFR+E   + N+Q   S    HLS++   YDG K+FE + + +H
Sbjct: 491  MHDLITDLAQWVAGISYFRLETKLKGNEQSKVSSKARHLSFVGSRYDGAKKFEAISEFKH 550

Query: 61   LRTLLPVTLLSSRPGYLARSILPRLL-KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNL 119
            LRT LP+        YL+  I+ +LL KLQ LRV SL GY I  +P +IGDL +LRYL+L
Sbjct: 551  LRTFLPLMAPYVGYSYLSYHIINQLLPKLQNLRVLSLSGYRIVYLPQTIGDLKHLRYLDL 610

Query: 120  SGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGI 179
            S TQ+R+LP S++ LYNL TLLLE C  LK    D G L  L HLN   ++ LE MPL I
Sbjct: 611  SCTQLRSLPTSISTLYNLQTLLLENCTSLKFLPPDFGKLFNLRHLNIFGSNLLEGMPLSI 670

Query: 180  GKLTCLLTLCNFVVGK-DSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKN 238
            G L+ L TL NFVVGK DS   +REL  L HL GTL ISKLENV    +A ++ L GK++
Sbjct: 671  GNLSSLQTLSNFVVGKADSFCVIRELGPLVHLRGTLCISKLENVTKAQEARDSYLYGKQD 730

Query: 239  LKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSN 298
            L  +++EW+ + N   S++ +T+  VL+ML+P+  L++  +  +GG KFPTW+G   FSN
Sbjct: 731  LNEVVMEWSSNLN--ESQDEETQLEVLNMLQPNVKLKELTVKCYGGTKFPTWIGDPSFSN 788

Query: 299  LVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFA 358
            LV L+F++C  C S+P VGQLP LK L ++GM+ VK +G EFYG     PF  LETLHF 
Sbjct: 789  LVLLRFENCDNCNSLPPVGQLPFLKDLLIKGMAGVKSVGREFYGESCSRPFQSLETLHFE 848

Query: 359  EMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQ-------NF 411
            +M  W  WIP G +   E F  L +L I+RC  L   LP HL  L  LV+        + 
Sbjct: 849  DMPRWVNWIPLGVN---EAFACLHKLSIIRCHNLVRKLPDHLPSLKKLVIHGCWNMVVSV 905

Query: 412  TSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIID 471
            ++LP LC L I+ CK+V      +CES +          G P  +   K+ E   +    
Sbjct: 906  SNLPMLCVLVIEGCKRV------ECESSVG--------FGSPYSMAFSKISEFGNAT--- 948

Query: 472  GLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEK 531
                       L+  ++ ++ LKI    KL  L     W                   EK
Sbjct: 949  ---------AGLMHGVSKVEYLKIVDSEKLTTL-----W-------------------EK 975

Query: 532  LPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALK-FLPEAWMLD-NNS 589
            +P+ L  L  L E+ I +C +LVSFP +  PS L+VI I     LK  LPE  +    N+
Sbjct: 976  IPEGLHRLKFLRELSIEDCPTLVSFPASGFPSMLKVIQIKSCSGLKSLLPEGTLHSRENA 1035

Query: 590  SLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTL------------TAEEGIHSS 637
             LE L +  C  +  IA  QLP +LK+LEI +C NL+ +              +E I++ 
Sbjct: 1036 CLERLCVVRCDSMKSIARGQLPTTLKKLEISHCMNLQCVLDEGEGSSSSSGMHDEDINN- 1094

Query: 638  RRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVV------------GNLPQALKFLSI 685
             R  + L+ L+I SCPSLT L S  +L A L +L++            G LP AL++L I
Sbjct: 1095 -RSKTHLQYLDIKSCPSLTTLTSSGKLPATLTHLLLRECPKLMCLSSTGKLPAALQYLEI 1153

Query: 686  WHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEG 745
               SKL+ I ERL    SLE I+I +C  LK LP  LH L  L++  I  C++  SFP  
Sbjct: 1154 QSISKLQKIAERLHQNTSLECIKIWNCHGLKSLPEDLHNLSKLRQFLIFWCQSFSSFPAA 1213

Query: 746  GLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEI 805
            GL S  L+ L I  CK L+ALP GM NL+SLQ L I      L   ++GL PTNL  L +
Sbjct: 1214 GLPS-NLRVLGIKNCKNLKALPNGMRNLTSLQKLDISHRLDSLPSPQEGL-PTNLIELNM 1271

Query: 806  DGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLE-DIRLGTTLPACLTQLEIFNF 864
              +K +K + +  G  + TSL +L+I G   D+ S+P E +  +   LP  L+ L I  F
Sbjct: 1272 HDLKFYKPMFEW-GLQQPTSLIKLSIHGECLDVDSYPGERENGVMMLLPNSLSILCISYF 1330

Query: 865  PNLERLSSSICDQNLTS---LKLTNCPKLKYFPEKGLPASLLRLEIKKCPLIEKMCRQDI 921
             NLE LS     QNLTS   LK+ NC KL   P++GLP SL +LEI+ CPL+ + C  + 
Sbjct: 1331 QNLECLSPK-GFQNLTSLNQLKIYNCLKLTSLPKEGLPPSLTQLEIRNCPLLSQHCNNEK 1389

Query: 922  GPYWHLLIHIPCVLIE 937
            G  W  + HIPCVLI+
Sbjct: 1390 GQEWSKIAHIPCVLID 1405

Source: Quercus suber

Species: Quercus suber

Genus: Quercus

Family: Fagaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|400131587|emb|CCH50986.1| FB_MR5 [Malus x robusta]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 401/973 (41%), Positives = 552/973 (56%), Gaps = 115/973 (11%)

Query: 1    MHDLVNDLAQWAAGEMYFRMEYISEVNKQQ--SFSRNLHHLSYIRGDYDGVKRFEDLYDI 58
            MHDL+ DLA+WAAGE+ FR+E     + +Q   F +   H SYIRG  DGVKRFE   ++
Sbjct: 491  MHDLIGDLARWAAGEICFRLEDKQNDDGEQLRCFPK-ARHSSYIRGLSDGVKRFEVFSEL 549

Query: 59   QHLRTLLPVTLLSSRPGYLARSILPRLL-KLQRLRVFSLRGYLISEVPDSIGDLSYLRYL 117
            ++LRT LP+    S   YL+R +   LL KLQ LRV S   Y I+E+PDSIGDL YLRYL
Sbjct: 550  KYLRTFLPLRK-DSFWNYLSRQVAFDLLPKLQYLRVLSFNCYKITELPDSIGDLRYLRYL 608

Query: 118  NLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPL 177
            +LS T I +LP+S + LYNL TL+LEGC +LK    DM NL+ L HLNNSN   LE+MP 
Sbjct: 609  DLSYTDITSLPKSTSTLYNLQTLILEGCSKLKALPIDMSNLVNLRHLNNSNVSLLEDMPP 668

Query: 178  GIGKLTCLLTLCNFVVG---KDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLD 234
             +G+L  L +L  FVV        SG+REL+ L HL GTL IS+LENV  V DA  A L+
Sbjct: 669  QLGRLVNLQSLTKFVVSGGGGGDRSGIRELEFLMHLRGTLCISRLENVTDVEDAQRANLN 728

Query: 235  GKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYS 294
             K+ L  L+LEW+ S++   +RE  TE  VLDML+PH  L++  I  + GK+F +W+G  
Sbjct: 729  CKERLDSLVLEWSHSSD---TRE--TESAVLDMLQPHTKLKELTIKSYAGKEFSSWVGVP 783

Query: 295  LFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLET 354
            LFSN+V ++ ++C+ C S+P +G+LP LK L +RGM+ V+ +G+EFYG  S +PFP LET
Sbjct: 784  LFSNMVLVRLEECNNCLSLPPLGKLPHLKELYIRGMNAVESVGAEFYGECS-LPFPLLET 842

Query: 355  LHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHL-TLLDILVVQ---- 409
            L F +MQ W+ W+P         FP L+ L + +CSKL+G LP +L +L  + +V+    
Sbjct: 843  LEFVDMQHWKVWLPFQTDHRGSVFPCLKTLLVRKCSKLEGKLPENLDSLASLEIVKCEEL 902

Query: 410  --NFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKD--ISNQMFLGGPLKLQLPKLDELD 465
              +  +   L +L ID CK VV  +    E +L +   +SN   +     LQ  +L    
Sbjct: 903  LVSIANYKQLRQLNIDGCKGVV-HTAAKVEFELLESLYLSN---ISELTSLQTGELCRNG 958

Query: 466  ISIIID-------GLSYIWQNETQLLQDIATLKRLKIERCPKL--QFLEEED---QWQFG 513
            ++++ D        L+   +NE  LLQ + +L RL+IE    L  +  +E D   Q Q  
Sbjct: 959  LNMVRDLKINGCEELTSSLKNEAILLQQLISLGRLEIEDNSLLVEELGKEADELLQLQI- 1017

Query: 514  LSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDS 573
            L  +LE L+L  C++L KLP+ L  LSSL E+RIH CSSLVSFP+  LP  L+ I     
Sbjct: 1018 LGCKLEFLKLKKCKNLLKLPEGLNQLSSLQELRIHECSSLVSFPDVGLPPSLKDI----- 1072

Query: 574  GALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEG 633
                                 +I  CH L Y A  Q+P +L++++I +C +LR+L   E 
Sbjct: 1073 ---------------------EITECHSLIYFAKSQIPQNLRRIQIRDCRSLRSLVDNEA 1111

Query: 634  IHS-SRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLE 692
            + S S    + LE L I  C SLT L   ++            L +AL+ L I+ C +LE
Sbjct: 1112 VGSCSSSSHNCLEYLNIERCQSLTLLSLSDQ------------LVRALRELDIYDCEQLE 1159

Query: 693  SIVERLDNKISLEVIEIVSCENLKMLPHGL---HKLWHLQEIDIQDCENLVSFPE--GGL 747
             +                        P GL   +  + L+   I+ C+NL S P   GG+
Sbjct: 1160 FLA-----------------------PDGLFCNNTNYFLENFRIRRCQNLKSLPRLSGGI 1196

Query: 748  LSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDG 807
              + L+ + I  C +LEALPE MHN +SL+ L I     L C      FP NL SL I  
Sbjct: 1197 RGSNLREIRITDCDRLEALPEDMHNFNSLEKLIIDYREGLTCS-----FPANLTSLMIWK 1251

Query: 808  MKIWKSLMQLG-GFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPN 866
            +K  KSL +L  G HR TSLR L I G D DMVSFP + +R+ T LP  LT+L I  FPN
Sbjct: 1252 VKSCKSLWELEWGLHRLTSLRYLWIGGEDPDMVSFPPDMVRMETLLPKSLTELSIGGFPN 1311

Query: 867  LERLSSSICD--QNLTSLKLTNCPKLKYFPEKGLPASLLRLEIKKCPLIEKMCRQDIGPY 924
            L++LSS       +L SL+L +CPKL   P++GLP SL  L I  CP++++ C+   G Y
Sbjct: 1312 LKKLSSKGFQFLTSLESLELWDCPKLASIPKEGLPLSLTELCIYGCPVLKERCQPGKGRY 1371

Query: 925  WHLLIHIPCVLIE 937
            WH + HIP + I+
Sbjct: 1372 WHKISHIPYIDID 1384

Source: Malus x robusta

Species: Malus x robusta

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449649|ref|XP_002262753.1| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 387/961 (40%), Positives = 528/961 (54%), Gaps = 75/961 (7%)

Query: 1    MHDLVNDLAQWAAGEMYFRMEYISEVNKQQSFSRNLHHLSYIRGDYDGVKRFEDLYDIQH 60
            MHDL+NDLAQ+ + E+ F +E   + N++ +FS ++ H S+ R  Y+  ++FED Y  ++
Sbjct: 499  MHDLINDLAQYVSEEICFHLEDSLDSNQKHTFSGSVRHSSFARCKYEVFRKFEDFYKAKN 558

Query: 61   LRTLL--PVTLLSSRPGYLARSILPRLL-KLQRLRVFSLRGYLISEVPDSIGDLSYLRYL 117
            LRT L  P+ +      +L   +   LL KL+ LRV SL  Y I E+P+SIGDL +LRYL
Sbjct: 559  LRTFLALPIHMQYYDFFHLTDKVSHDLLPKLRYLRVLSLSHYEIRELPNSIGDLKHLRYL 618

Query: 118  NLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPL 177
            NLS T I+ LP+S++ L+NL TL+L  CR L +      NLI L HL+ ++T  LE MP 
Sbjct: 619  NLSCTIIQELPDSLSDLHNLQTLVLFRCRRLNRLPRGFKNLINLRHLDIAHTHQLEVMPP 678

Query: 178  GIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKK 237
             +GKL  L TL  F+VGK    G++EL  L HL G L+I  L+NV  + DA +A L  K 
Sbjct: 679  QMGKLKSLQTLSKFIVGKSKELGIKELGDLLHLRGKLSILDLQNVVDIQDARDANLKDKH 738

Query: 238  NLKVLMLEWTRSTNGLSSREAQT-EKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLF 296
            +L+ L++EW  S+N     + +T E  VL  L+P+ +L++  I  +GG  FP W+G   F
Sbjct: 739  HLEELLMEW--SSNMFDDSQNETIELNVLHFLQPNTNLKKLTIQSYGGLTFPYWIGDPSF 796

Query: 297  SNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDS--PIPFPCLET 354
            S +V L+   C  CT +PS+G+L SLK L V+GM  VK +G EFYG  S    PFP LE 
Sbjct: 797  SKMVCLELNYCRKCTLLPSLGRLSSLKKLCVKGMQGVKSVGIEFYGEPSLCVKPFPSLEF 856

Query: 355  LHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTH---LTLLDIL----V 407
            L F +M EWEEW    CS   E +P+LREL I  C KL   LP+H   L  LDI+    +
Sbjct: 857  LRFEDMPEWEEW----CSS--ESYPRLRELEIHHCPKLIQKLPSHLPSLVKLDIIDCPKL 910

Query: 408  VQNFTSLPALCKLRIDRCKKVVWRSTTDCESQL---YKDISNQMFLGGPLKLQLPKLDEL 464
            V    SLP L  L +  C + + RS  D  S +    ++ISN  FL   L   L  L+ L
Sbjct: 911  VAPLPSLPFLRDLIVAECNEAMLRSGGDLTSLITLRLENISNLTFLNEGLVRFLGALEVL 970

Query: 465  DISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELI 524
            +I    + L ++ Q+     ++++ ++ L I  CPKL  L E+      L   LE+LE+ 
Sbjct: 971  EICNCSE-LKFLLQSGVG-FENLSCIRHLVIVMCPKLVLLAEDQP----LPCNLEYLEIN 1024

Query: 525  NCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWM 584
             C  LEKLP  L SL+SL E+ I  C  L S  E   P  L  + ++D   L+ LP+  M
Sbjct: 1025 KCASLEKLPIGLQSLTSLRELSIQKCPKLCSLAEMDFPPMLISLELYDCEGLESLPDGMM 1084

Query: 585  LDNNSS----LEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRH 640
            ++  +     LE L I HC  L      +LP  LK+LEI +C  L++L   EG+     H
Sbjct: 1085 INGENRNFCLLECLKIVHCPSLICFPRGELPSKLKELEIIDCAKLQSLP--EGLILG-DH 1141

Query: 641  TSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDN 700
            T  LE L IH CP L+                 G LP  +K L I +C +LESI   L +
Sbjct: 1142 TCHLEFLRIHRCPLLSSFPR-------------GLLPSTMKRLEIRNCKQLESI-SLLSH 1187

Query: 701  KISLEVIEIVSCENLKMLPHG-LHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYG 759
              +LE + I   + LK+   G LH L HL E+ I  C  L SFPE G  S  LK L I  
Sbjct: 1188 STTLEYLRI---DRLKINFSGCLHSLKHLIELHIYSCSGLESFPERGFSSPNLKMLHIDD 1244

Query: 760  CKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGG 819
            CK L++LP  M + +SL+ L I   P+L+ F E+GL   NL S  I   K  K  +   G
Sbjct: 1245 CKNLKSLPLQMQSFTSLRDLRIYDCPNLVSFAEEGL-SLNLTSFWIRNCKNLKMPLYQWG 1303

Query: 820  FHRYTSLRRLAISG----CDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSIC 875
             H  TSL+   I+     CD D  S PL        LP  LT L I  F NLE L SS+ 
Sbjct: 1304 LHGLTSLQTFVINNVAPFCDHD--SLPL--------LPRTLTYLSISKFHNLESL-SSMG 1352

Query: 876  DQNLTS---LKLTNCPKLKYF-PEKGLPASLLRLEIKKCPLIEKMCRQDIGPYWHLLIHI 931
             QNLTS   L++ +CPKL+ F P++GL A+L  L IK CP+IE  CR++ G  W ++ HI
Sbjct: 1353 LQNLTSLEILEIYSCPKLQTFLPKEGLSATLSNLRIKFCPIIEARCRKNKGEDWPMISHI 1412

Query: 932  P 932
            P
Sbjct: 1413 P 1413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554923|ref|XP_003545790.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max]

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 373/977 (38%), Positives = 532/977 (54%), Gaps = 121/977 (12%)

Query: 1    MHDLVNDLAQWAAGEMYFRME--YISEVNKQQSFSRNLHHLSYIRGDYDGVKRFEDLYDI 58
            MHDL+NDLAQW AGE  F+++  + S   K++  S+   + SY+ G+YDG++ F+   + 
Sbjct: 493  MHDLINDLAQWVAGESCFKLDNNFQSHKQKKKKISKMTRYASYVGGEYDGIQMFQAFKEA 552

Query: 59   QHLRTLLPVTLLS-SRPGYLARSILPRLL-KLQRLRVFSLRGYLISEVPDSIGDLSYLRY 116
            + LRT LP+         Y+   +   LL +L+ LR  SL GY IS++P+S+ +L+ LRY
Sbjct: 553  KSLRTFLPLKHRRLEEWSYITNHVPFELLPELRCLRALSLSGYFISKLPNSVSNLNLLRY 612

Query: 117  LNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMP 176
            LNLS T +R LPES+  L NL TLLL  C  L++  ++M +LI L HL+ + + SL  MP
Sbjct: 613  LNLSSTDLRQLPESICSLCNLQTLLLRDCFNLEELPSNMSDLINLRHLDITRSHSLTRMP 672

Query: 177  LGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGK 236
             GIGKLT L TL NFVVG    SG+ EL  L+++ G L++S+LE+V    +A EA ++ K
Sbjct: 673  HGIGKLTHLQTLSNFVVG---SSGIGELMKLSNIRGVLSVSRLEHVTDTREASEAMINKK 729

Query: 237  KNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLF 296
              + VL L+WT   N  S  E   E  VL ML+PH++L +  I  +GG  FP W+G   +
Sbjct: 730  VGIDVLKLKWTSCMNNQSHTERAKE--VLQMLQPHKNLAKLTIKCYGGTSFPKWIGDPSY 787

Query: 297  SNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLH 356
             +LV LK +DC+ CTS+P++G L +LK L + GM  V  +  EF GN    PFP LE L+
Sbjct: 788  KSLVFLKLKDCAHCTSLPALGNLHALKELYIIGMKEVCCIDGEFCGNACLRPFPSLERLY 847

Query: 357  FAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQ------- 409
            F +M++WE W     +++ + F  L++L IV+C KL G LP +L  L  ++V+       
Sbjct: 848  FMDMEKWENWFLSDNNEQNDMFSSLQQLFIVKCPKLLGKLPENLPSLKHVIVKECEQLLV 907

Query: 410  NFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISII 469
              +SLP L KL I+ CK +V     +  S                      L+ + +S I
Sbjct: 908  TISSLPVLYKLEIEGCKGLVLNCANEFNS----------------------LNSMSVSRI 945

Query: 470  IDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEE---EDQWQFGLSFRLEHLELINC 526
            ++  +++ +   +L+Q   T++ LKI  C     L+E    D W             +N 
Sbjct: 946  LE-FTFLME---RLVQAFKTVEELKIVSCA----LDETVLNDLW-------------VNE 984

Query: 527  QDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLD 586
              LEK P  L S+  L E+R  NC+ + S P+                         ++ 
Sbjct: 985  VWLEKNPHGLSSILRLIEIR--NCNIMKSIPKV------------------------LMV 1018

Query: 587  NNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTL------------TAEEGI 634
            N+  LE L I HC  + ++   QLP SLK LEI NC NLR L              ++ +
Sbjct: 1019 NSHFLERLYICHCDSIVFVTMDQLPHSLKSLEISNCKNLRCLLDNGTCTSSSIIMHDDNV 1078

Query: 635  HSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVV------------GNLPQALKF 682
                   S LE + I  CPSLTC+    EL  ++ +L +            G LP++++ 
Sbjct: 1079 QHGSTIISHLEYVYIGWCPSLTCISRSGELPESVKHLFIWNCSELSCLSMKGQLPKSIER 1138

Query: 683  LSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSF 742
            L I  C KLESI  RL    SLE I+I +CENLK LP GLH L +L+EI I  C NLVSF
Sbjct: 1139 LEIQSCPKLESIANRLHRNTSLESIQIWNCENLKSLPEGLHFLVNLKEIKIIGCPNLVSF 1198

Query: 743  PEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHS 802
            PE GL ++ L  L I  C+KL ALP  M+NL SL+ L IG  PS+  F E   FP NL S
Sbjct: 1199 PEEGLPASSLSELSIMSCEKLVALPNSMYNLDSLKELEIGYCPSIQYFPEIN-FPDNLTS 1257

Query: 803  LEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIF 862
            L I+     +++   G  ++ + LR L I G +  M   PLE  +LGT LP+ LT L + 
Sbjct: 1258 LWINDHNACEAMFNWG-LYKLSFLRDLTIIGGNLFM---PLE--KLGTMLPSTLTSLTVQ 1311

Query: 863  NFPNLERLSSSICDQ--NLTSLKLTNCPKLKYFPEKGLPASLLRLEIKKCPLIEKMCRQD 920
             FP+LE LSS    +  +L+ L + NCPKL   PEKGLP+SLL L I+ CP +++ CR+D
Sbjct: 1312 GFPHLENLSSEGFHKLTSLSKLSIYNCPKLLCLPEKGLPSSLLELYIQDCPFLKEQCRKD 1371

Query: 921  IGPYWHLLIHIPCVLIE 937
             G  W  +  +P V I+
Sbjct: 1372 KGRDWLKIADVPYVEID 1388

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059584|ref|XP_002299919.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222847177|gb|EEE84724.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 373/977 (38%), Positives = 511/977 (52%), Gaps = 98/977 (10%)

Query: 1    MHDLVNDLAQWAAGEMYFRMEYISEVNKQQSFSRNLHHLSYIRGDYDGVKRFEDLYDIQH 60
            MH L++DLAQ  AGE    +    E NK         H+S+ R  Y+ ++RF+DL  ++ 
Sbjct: 495  MHHLISDLAQSIAGETCVNLNDKLENNKVFPDPEKTRHMSFTRRTYEVLQRFKDLGKLKR 554

Query: 61   LRTLLPVTLLSSRPG---YLARSILPRLL-KLQRLRVFSLRGYLISEVPDSIGDLSYLRY 116
            LRT + + L SS      YL+ ++L   L KL+RLRV SL GY I+E+P+SIGDL  LRY
Sbjct: 555  LRTFIALRLYSSPWAAYCYLSNNVLHEALSKLRRLRVLSLSGYCITELPNSIGDLKQLRY 614

Query: 117  LNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMP 176
            LN S T+I+ LPESV+ L NL TL L GCR+L K     GNLI L HL+ ++TD+L EMP
Sbjct: 615  LNFSQTKIKRLPESVSTLINLQTLKLYGCRKLNKLPQGTGNLIDLCHLDITDTDNLFEMP 674

Query: 177  LGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGK 236
              +G LT L  L  F VGK  G G+ EL+ L +L G L+I  L NV     A+ A L GK
Sbjct: 675  SWMGNLTGLQKLSKFTVGKKEGCGIEELRGLQNLEGRLSIMALHNVIDARHAVHANLRGK 734

Query: 237  KNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLF 296
             NL  L LEW++S   +   + Q +  VLD L+PH +L++  IS +GG +FP+W+G+  F
Sbjct: 735  HNLDELELEWSKSD--IKDEDRQHQMLVLDSLQPHTNLKELKISFYGGTEFPSWVGHPSF 792

Query: 297  SNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPI-PFPCLETL 355
            S +V LK   C  CT +P +G+LP L+ L ++G+  V+ +G EFYG+ S + PFP L+TL
Sbjct: 793  SKIVHLKLSCCRKCTVLPPLGRLPLLRDLCIQGLDAVETVGHEFYGDCSSVKPFPSLKTL 852

Query: 356  HFAEMQEWEEWIPHGCSQEI-EGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSL 414
             F +MQEW+ W   G   E  E FP L EL +  C KL G  P              + L
Sbjct: 853  TFEDMQEWKSWSAVGVDGEAEEQFPSLSELTLWNCPKLLGRFP--------------SCL 898

Query: 415  PALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELD--------- 465
            P+  K+ I +C  +V             D   ++ + G LKL+  + DE+          
Sbjct: 899  PSCVKITIAKCPMLV-------------DSDEKLPVLGELKLE--ECDEVKPKCMFHNSS 943

Query: 466  -ISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFR-LEHLEL 523
             I++ +  +S +   + QLLQ +  LK L I   PKL  L     WQ G      EH + 
Sbjct: 944  LITLKLGSMSRLTYLKGQLLQSLGALKVLMISDFPKLTSL-----WQKGTGLENFEHPQF 998

Query: 524  IN-----------------CQDLEKLP-KSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQL 565
            ++                 C  L+ LP  ++  L SL ++ I +C +LVS PEA L S L
Sbjct: 999  VSLTEIGMPSTHKSSKLSGCDKLDLLPIHTVHMLLSLEDLCIESCPNLVSIPEAGLLSSL 1058

Query: 566  RVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNL 625
            R + + D  AL+ LP+     +N  LE L+I  C  L    G  LP +LK L+I  C  L
Sbjct: 1059 RHLVLRDCKALRSLPDGM---SNCPLEDLEIEECPSLECFPGRMLPATLKGLKIRYCTEL 1115

Query: 626  RTLTAEEGIHSSRRHTSL--LECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFL 683
            ++L  E+ +H+     +L   E LEI  CPSL                  G LP  LK L
Sbjct: 1116 KSL-PEDLMHNKNGPGTLCHFEHLEIIGCPSLKSFPD-------------GKLPTRLKTL 1161

Query: 684  SIWHCSKLESIVE-RLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSF 742
             IW CS+L+ + E  L + +SLE + I  CE L   P  L    HL E+++ +C  L  F
Sbjct: 1162 KIWDCSQLKPLSEMMLHDDMSLEYLAISDCEALSSFPECLSSFKHLSELNLSNCSALKLF 1221

Query: 743  PEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHS 802
            P  G   A L+ L IY CK L++LP  M  L+SLQ LTI   P+L  F  +G  P +L S
Sbjct: 1222 PGVGFPPANLRTLTIYNCKNLKSLPNEMRKLTSLQELTICSCPALKSFP-NGDMPPHLTS 1280

Query: 803  LEIDGMKIWKSLMQLGGFHRYTSLRRLAIS-GCDEDMVSFPLEDIRLGTTLPACLTQLEI 861
            LEI         +        T LR  +I+ GC    VSFP E       LP  LT + I
Sbjct: 1281 LEIWDCDNLDGCLSEWNLQSLTCLRDFSIAGGCFSHTVSFPDEK----CLLPTNLTSVWI 1336

Query: 862  FNFPNLERLSSSICD-QNLTSLKLTNCPKLKYFPEKGLPASLLRLEIKKCPLIEKMCRQD 920
               PNLE LS  +     L  L++ +CPKLK  P   LP +L R  I+ CPL+ + C + 
Sbjct: 1337 GRLPNLESLSMQLQSLAYLEELEIVDCPKLKSLPRGCLPHALGRFSIRDCPLMTQRCSKL 1396

Query: 921  IGPYWHLLIHIPCVLIE 937
             G YW L+ HIPCV I+
Sbjct: 1397 KGVYWPLISHIPCVEID 1413

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766392|emb|CAN67818.1| hypothetical protein VITISV_007674 [Vitis vinifera]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 364/974 (37%), Positives = 511/974 (52%), Gaps = 125/974 (12%)

Query: 1    MHDLVNDLAQWAAGEMYFRMEYISEVNKQQSFSRNLHHLSYIRGDYDGVKRFEDLYDIQH 60
            MHDLVNDLA++  GE+ F +E   E N+QQ+ S+   H S+IRG YD  K+FE  Y +++
Sbjct: 505  MHDLVNDLAKFVGGEICFSLEENLEGNQQQTISKKARHSSFIRGSYDVFKKFEAFYGMEN 564

Query: 61   LRTLLPVTLLSSRPGY--LARSILPRLL-KLQRLRVFSLRGYLISEVPDSIGDLSYLRYL 117
            LRT + + + +S  GY  L+  +L  L+ KL+RLRV SL  Y ISE+P SIGDL +LRYL
Sbjct: 565  LRTFIALPIDASW-GYDWLSNKVLEGLMPKLRRLRVLSLSTYRISEIPSSIGDLKHLRYL 623

Query: 118  NLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPL 177
            NLS T+++ LP+S+  LYNL TL+L  C +L +    + NL  L HL+ +NT+ LEEMPL
Sbjct: 624  NLSRTKVKWLPDSLGNLYNLETLILSNCSKLIRLALSIENLNNLRHLDVTNTN-LEEMPL 682

Query: 178  GIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKK 237
             I KL  L  L  F+VGKD+G  ++EL+ + HL   L IS LENV  V DA +A L+ K+
Sbjct: 683  RICKLKSLQVLSKFIVGKDNGLNVKELRNMPHLQDGLCISNLENVANVQDARDASLNKKE 742

Query: 238  NLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFS 297
             L+ L +EW+   +   S  A+ +  VLD L+PH +L +  I  +GG +FP W+G   FS
Sbjct: 743  KLEELTIEWSAGLD--DSHNARNQIDVLDSLQPHFNLNKLKIGYYGGPEFPPWIGDVSFS 800

Query: 298  NLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGND--SPIPFPCLETL 355
             +V +   +C  CTS+P +G LP LKH+ + G++ VK +G EFYG       PFP LE+L
Sbjct: 801  KMVDINLVNCRNCTSLPCLGWLPMLKHVRIEGLNEVKIVGREFYGETCLPNKPFPSLESL 860

Query: 356  HFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQN----- 410
             F+ M +WE+W     S   E +P L  L I+ C KL   LPT+L  L  L +       
Sbjct: 861  SFSAMSQWEDWESPSLS---EPYPCLLHLEIINCPKLIKKLPTNLPSLVHLSIDTCPQWV 917

Query: 411  --FTSLPALCKLRIDRCKKVVWRSTTD----CESQLYKDISNQMFLGGPLKLQLPKLDEL 464
                 LP+L KLR+  C + V RS  +     E ++ + +       G ++L L  L  L
Sbjct: 918  SPLERLPSLSKLRVGDCNEAVLRSGLELPSLTELRIERIVGLTRLHEGCMQL-LSGLQVL 976

Query: 465  DISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELI 524
            DI    D L+ +W+N    +Q      +L+   CP+L  L E+++ +  L  +L+ L+++
Sbjct: 977  DID-RCDELTCLWENGFDGIQ------QLQTSSCPELVSLGEKEKHK--LPSKLQSLKIL 1027

Query: 525  NCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWM 584
             C +LEKLP  L  L+ L E+ I+NC  LVSFPE   P  LR + I     L+ LP+ WM
Sbjct: 1028 RCNNLEKLPNGLHRLTCLGELEIYNCPKLVSFPELGFPPMLRRLVIVSCEGLRCLPD-WM 1086

Query: 585  L-----DNNSS----LEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIH 635
            +      NN S    LE L+I  C  L      +LP +LKQL I+ C+ L +L      H
Sbjct: 1087 MVMKDGSNNGSDVCLLEYLEIDRCPSLIGFPEGELPTTLKQLRIWECEKLESLPGGMMHH 1146

Query: 636  SSRRHTSL---LECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLE 692
             S   T+    L  LEI  CPSLT             +   G  P  LK L IW C++LE
Sbjct: 1147 DSNTTTATSGGLHVLEIWDCPSLT-------------FFPTGKFPSTLKKLQIWDCAQLE 1193

Query: 693  SIVERL--DNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSA 750
            SI +     N  SLE + I S   LK++P  L+K   L+E++I +CEN+   P       
Sbjct: 1194 SISKETFHSNNSSLEYLSIRSSPCLKIVPDCLYK---LRELEINNCENVELLPHQLQNLT 1250

Query: 751  KLKRLVIYGCKKLEALPE--GMHNLSSLQYLTIGGV-PSLLCFTEDG----LFPTNLHSL 803
             L  L IY C+ ++      G+  L+SL+ LTIGG+ P +  F+ DG    + PT L  L
Sbjct: 1251 ALTSLGIYRCENIKTPLSRWGLATLTSLKKLTIGGIFPRVASFS-DGQRPLILPTTLTFL 1309

Query: 804  EIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFN 863
             I   +  KSL  L      TSL +L I  C                             
Sbjct: 1310 FIQDFQNLKSLSSL-ALQTLTSLEKLLIEDC----------------------------- 1339

Query: 864  FPNLERLSSSICDQNLTSLKLTNCPKLKYFPEKGLPASLLRLEIKKCPLIEKMCRQDIGP 923
             P LE    S C                  P +GLP +L RL IK CPL+++ C +  G 
Sbjct: 1340 -PKLE----SFC------------------PREGLPDTLSRLYIKDCPLLKQRCSKRKGQ 1376

Query: 924  YWHLLIHIPCVLIE 937
             W  + HIP V I+
Sbjct: 1377 DWPNIAHIPYVRID 1390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487424|ref|XP_002271822.2| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera]

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 373/1007 (37%), Positives = 524/1007 (52%), Gaps = 132/1007 (13%)

Query: 1    MHDLVNDLAQWAAGEMYFRMEYISEVNKQQSFSRNLHHLSYIRGDYDGVKRFEDLYDIQH 60
            MHDL+ DLA+ A+GE+ F +E   + N+Q + S+   H S+IRG +D  K+FE    ++H
Sbjct: 502  MHDLICDLARVASGEICFCLEDTLDSNRQSTISKETRHSSFIRGKFDAFKKFEAFQGLEH 561

Query: 61   LRTLLPVTLLSSRPGYLARSILPRLL--KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLN 118
            LRT + + +  +       S++   L  K ++LRV SL  Y+I E+PDSIG L +LRYLN
Sbjct: 562  LRTFVALPIQGTFTESFVTSLVCDHLVPKFRQLRVLSLSEYMIFELPDSIGGLKHLRYLN 621

Query: 119  LSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLG 178
            LS TQI+ LP+SV  LYNL TL+L  C+ L +  +++GNLI L HLN     SL++MP  
Sbjct: 622  LSFTQIKLLPDSVTNLYNLQTLILSNCKHLTRLPSNIGNLISLRHLNVVGC-SLQDMPQQ 680

Query: 179  IGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKN 238
            IGKL  L TL +F+V K    G++ELK L+HL G + ISKLENV  V DA +A L  K N
Sbjct: 681  IGKLKKLQTLSDFIVSKRGFLGIKELKDLSHLRGEICISKLENVVDVQDARDANLKAKLN 740

Query: 239  LKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSN 298
            ++ L + W++  +G    +A+ E  VL  L+PH SL++  I G+GG++FP W+    +  
Sbjct: 741  VERLSMIWSKELDGSHDEDAEME--VLLSLQPHTSLKKLNIEGYGGRQFPNWICDPSYIK 798

Query: 299  LVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDS--PIPFPCLETLH 356
            LV L    C  C S+PSVGQLP LK L ++ M  VK +G EF G  S    PF CLE+L 
Sbjct: 799  LVELSLIGCIRCISVPSVGQLPFLKKLVIKRMDGVKSVGLEFEGQVSLHAKPFQCLESLW 858

Query: 357  FAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDIL--------VV 408
            F +M EWEEW    C  + E F  L +L I  C +L   LPTHLT L  L        +V
Sbjct: 859  FEDMMEWEEW----CWSK-ESFSCLHQLEIKNCPRLIKKLPTHLTSLVKLNIGNCPEIMV 913

Query: 409  QNFTSLPALCKLRIDRCKKVV----------------WRSTTDCESQLYKDIS--NQMFL 450
            +  T LP+L +L I  C +++                 RS  D  S +Y D+S  +Q+  
Sbjct: 914  RRPTHLPSLKELNIYYCPEMMPQFENHEFFIMPLREASRSAIDITSHIYLDVSGISQLSR 973

Query: 451  GGPLKLQ-LPKLDELDIS-------IIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQ 502
              P  +Q LP+L+ L+I        + +DGL             +  L RL+I    +L 
Sbjct: 974  LQPEFMQSLPRLELLEIDNSGQLQCLWLDGLG------------LGNLSRLRILSSDQLV 1021

Query: 503  FLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLP 562
             L  E++   GL + L+HLE+  C  LEKLP  L S +SL E+ I +C  LVSFPE   P
Sbjct: 1022 SLGGEEEEVQGLPYNLQHLEIRKCDKLEKLPHGLQSYTSLAELIIEDCPKLVSFPEKGFP 1081

Query: 563  SQLRVISIWDSGALKFLPEAWMLDNNSS----LEILDIRHCHLLTYIAGVQLPPSLKQLE 618
              LR ++I +  +L  LP+  M+ N+S+    LE L+I  C  L      QLP +L++L 
Sbjct: 1082 LMLRGLAISNCESLSSLPDGMMMRNSSNNMCHLEYLEIEECPSLICFPKGQLPTTLRRLF 1141

Query: 619  IYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQ 678
            I +C+ L +L  +  + +       +E L +  CPSLT                 G LP 
Sbjct: 1142 ISDCEKLVSLPEDIDVCA-------IEQLIMKRCPSLTGF--------------PGKLPP 1180

Query: 679  ALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCEN 738
             LK L IW C KL+S+ E + +  S                        LQ +DI  C +
Sbjct: 1181 TLKKLWIWGCEKLQSLPEGIMHHHSNNTTN-----------------GGLQILDISQCSS 1223

Query: 739  LVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMH--NLSSLQYLTIGGVPSLLCFTEDGLF 796
            L SFP G   S  LK + I  C +++ + E M   N ++L+ L+I G P+L     D L+
Sbjct: 1224 LTSFPTGKFPST-LKSITIDNCAQMQPISEEMFHCNNNALEKLSISGHPNLKTIP-DCLY 1281

Query: 797  P----------------------TNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGC 834
                                   T+L SL+I   +  K  +   G  R TSLR L I G 
Sbjct: 1282 NLKDLRIEKCENLDLQPHLLRNLTSLSSLQITNCETIKVPLSEWGLARLTSLRTLTIGGI 1341

Query: 835  DEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSICDQNLTSLK---LTNCPKLK 891
              +  SFP     L   LP  L +L I NF NLE L + +  Q LTSL+   +  CPKL+
Sbjct: 1342 FLEATSFPNHHHHL-FLLPTTLVELSISNFQNLESL-AFLSLQMLTSLRKLDVFQCPKLQ 1399

Query: 892  YF-PEKGLPASLLRLEIKKCPLIEKMCRQDIGPYWHLLIHIPCVLIE 937
             F P +GLP  L  L I+ CPL+ + C ++ G  W  + HIPCV I+
Sbjct: 1400 SFIPREGLPDMLSELYIRDCPLLIQRCSKEKGEDWPKIAHIPCVKID 1446

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495024|ref|XP_002267933.2| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 353/934 (37%), Positives = 500/934 (53%), Gaps = 68/934 (7%)

Query: 1    MHDLVNDLAQWAAGEMYFRMEYISEVNKQQSFSRNLHHLSYIRGDYDGVKRFEDLYDIQH 60
            MHDL++DLAQ  AG +   +E   ++   ++  +   HLS+IR   +  K+FE +   ++
Sbjct: 501  MHDLIHDLAQSIAGNVCLNLE--DKLENNENIFQKARHLSFIRQANEIFKKFEVVDKGKY 558

Query: 61   LRTLLP----VTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRY 116
            LRT L     V+ + S      +     L++++ LRV SL GY +S++P SI +LS+LRY
Sbjct: 559  LRTFLALPISVSFMKSLSFITTKVTHDLLMEMKCLRVLSLSGYKMSDLPSSIDNLSHLRY 618

Query: 117  LNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMP 176
            LNL  + I+ LP SV  LYNL TL+L  C  L +    MGNLI L HL+ + T  LEEMP
Sbjct: 619  LNLCRSSIKRLPNSVGHLYNLQTLILRDCWSLTEMPVGMGNLINLRHLDIAGTSQLEEMP 678

Query: 177  LGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGK 236
              +G LT L TL  F+VGK +GS ++ELK L  L G L+I  L NV+   DAM+A L  K
Sbjct: 679  PRMGSLTNLQTLSKFIVGKGNGSSIQELKHLLDLQGELSIQGLHNVRNTRDAMDACLKNK 738

Query: 237  KNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLF 296
             +++ L + W+   +   SR    E  VL++L+P R+L++  +  +GG KFP+W+G   F
Sbjct: 739  CHIEELTMGWSGDFD--DSRNELNEMLVLELLQPQRNLKKLTVEFYGGPKFPSWIGNPSF 796

Query: 297  SNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPI-PFPCLETL 355
            S + +L  ++C  CTS+P +G+L  LK L ++GM +VK +G EF+G  S   PFPCLE+L
Sbjct: 797  SKMESLTLKNCGKCTSLPCLGRLSLLKALRIQGMCKVKTIGDEFFGEVSLFQPFPCLESL 856

Query: 356  HFAEMQEWEEWIPHGCSQEIEG-FPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSL 414
             F +M EWE+W      +E EG F  LREL I  C KL G+LP  L  L  L +     L
Sbjct: 857  RFEDMPEWEDWCFSDMVEECEGLFSCLRELRIRECPKLTGSLPNCLPSLAELEIFECPKL 916

Query: 415  PA-------LCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDIS 467
             A       +C L +  C +VV R+  D  S    +I     L   L+    +L      
Sbjct: 917  KAALPRLAYVCSLNVVECNEVVLRNGVDLSSLTTLNIQRISRLTC-LREGFTQLLAALQK 975

Query: 468  IIIDG---LSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELI 524
            ++I G   ++ +W+N    L+ +  L+ + I +C  L  LEE+      L   L+HL++ 
Sbjct: 976  LVIRGCGEMTSLWENRFG-LECLRGLESIDIWQCHGLVSLEEQR-----LPCNLKHLKIE 1029

Query: 525  NCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWM 584
            NC +L++LP  L  L+ L E+ + +C  L SFPE  LP  LR + +     LK LP  + 
Sbjct: 1030 NCANLQRLPNGLQRLTCLEELSLQSCPKLESFPEMGLPPMLRSLVLQKCNTLKLLPHNY- 1088

Query: 585  LDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSS--RRHTS 642
              N+  LE L+I HC  L      +LP SLKQL+I +C NL+TL      H+S    ++ 
Sbjct: 1089 --NSGFLEYLEIEHCPCLISFPEGELPASLKQLKIKDCANLQTLPEGMTHHNSMVSNNSC 1146

Query: 643  LLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVER-LDNK 701
             LE LEI  C SL  L +             G LP  LK L IW C + + I E+ L + 
Sbjct: 1147 CLEVLEIRKCSSLPSLPT-------------GELPSTLKRLEIWDCRQFQPISEKMLHSN 1193

Query: 702  ISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCK 761
             +LE + I +  N+K+LP  LH L +L    I  C+ LVSFPE GL +  L+ L I  C+
Sbjct: 1194 TALEHLSISNYPNMKILPGFLHSLTYLY---IYGCQGLVSFPERGLPTPNLRDLYINNCE 1250

Query: 762  KLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFH 821
             L++LP  M NL SLQ L I     L  F E GL P NL SL I      K  +   G H
Sbjct: 1251 NLKSLPHQMQNLLSLQELNIRNCQGLESFPECGLAP-NLTSLSIRDCVNLKVPLSEWGLH 1309

Query: 822  RYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSIC--DQNL 879
            R TSL  L ISG    + S   ++  L TTL              + +L S +C   +NL
Sbjct: 1310 RLTSLSSLYISGVCPSLASLSDDECLLPTTLSKLF----------ISKLDSLVCLALKNL 1359

Query: 880  TSLK---LTNCPKLKYFPEKGLPASLLRLEIKKC 910
            +SL+   +  CPKL+     GLP +L RLEI+ C
Sbjct: 1360 SSLERISIYRCPKLRSI---GLPETLSRLEIRDC 1390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487225|ref|XP_002268551.2| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera]

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 355/947 (37%), Positives = 496/947 (52%), Gaps = 88/947 (9%)

Query: 1    MHDLVNDLAQWAAGEMYFRMEYISEVNKQQSFSRNLHHLSYIRGDYDGVKRFEDLYDIQH 60
            MHDL+NDLAQ  AGE+YF ++   E NKQ + S    H S+ R   +  ++FE  + ++ 
Sbjct: 498  MHDLINDLAQSVAGEIYFHLDGAWENNKQSTISEKTRHSSFNRQHSETQRKFEPFHKVKC 557

Query: 61   LRTL--LPVTLLSSRPGYLARSILPRLLK-LQRLRVFSLRGYLISEVPDSIGDLSYLRYL 117
            LRTL  LP+       GY++  +L  LLK ++ LRV SL GY I  +PDSIG+L YLRYL
Sbjct: 558  LRTLVALPMDQPVFSSGYISSKVLDDLLKEVKYLRVLSLSGYKIYGLPDSIGNLKYLRYL 617

Query: 118  NLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPL 177
            NLSG+ IR LP+SV  LYNL  L+L  C++L      +GNLI L HL+  +T  L+EMP 
Sbjct: 618  NLSGSSIRRLPDSVCHLYNLQALILSDCKDLTTLPVGIGNLINLRHLHIFDTWKLQEMPS 677

Query: 178  GIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKK 237
              G LT L TL  F+VG+ +  GLRELK L  L G L+I  L NV  + D  +A L+ K 
Sbjct: 678  QTGNLTKLQTLSKFIVGEGNNLGLRELKNLFDLRGQLSILGLHNVMNIRDGRDANLESKH 737

Query: 238  NLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFS 297
             ++ L +EW  S +  +SR    E+ VL+ L+PHR+L++  I+ +GG  FP W+    F 
Sbjct: 738  GIEELTMEW--SDDFGASRNEMHERNVLEQLRPHRNLKKLTIASYGGSGFPNWMKDPSFP 795

Query: 298  NLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHF 357
             +  L  +DC  CTS+P++GQ+ SLK L ++GMS V+ +  EFYG     PFP LE+L F
Sbjct: 796  IMTHLILKDCKRCTSLPALGQISSLKVLHIKGMSEVRTINEEFYGGIVK-PFPSLESLTF 854

Query: 358  AEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPAL 417
              M EWE W       E E FP LR L I  C KLQ  LP                LP+ 
Sbjct: 855  EVMAEWEYWFCPDAVNEGELFPCLRLLTIRDCRKLQ-QLP--------------NCLPSQ 899

Query: 418  CKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKL-DELDISIIIDGLSYI 476
             KL I  C  + + S+       +  +  Q     P  L++ ++ D+ ++  + +G    
Sbjct: 900  VKLDISCCPNLGFASSR------FASLGEQRL---PCNLKMLRIHDDANLEKLPNG---- 946

Query: 477  WQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSL 536
                   LQ +  L++L I  CP L+     +     L   L+ L + +C++LE LP+ +
Sbjct: 947  -------LQTLTCLEQLDITGCPSLRCFPNCE-----LPTTLKSLCIKDCKNLEALPEGM 994

Query: 537  L---SLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEI 593
            +   S   L E++I  C  L SFP+  LP  LR + + +   LK LP  +   ++ +LE 
Sbjct: 995  MHHDSTCCLEELKIEGCPRLESFPDTGLPPLLRRLEVSECKGLKSLPHNY---SSCALES 1051

Query: 594  LDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCP 653
            L+I  C  L      +LP +LK + I +C+NL +L      H S   T  LE + I  CP
Sbjct: 1052 LEISDCPSLRCFPNGELPTTLKSIWIQDCENLESLPEGMMHHDS---TCCLEEVIIMGCP 1108

Query: 654  SLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERL-DNKISLEVIEIVSC 712
             L              +   G LP  LK L I  C  LES+ E +  N  +L+ + +   
Sbjct: 1109 RLE------------SFPDTGELPSTLKKLEICGCPDLESMSENMCPNNSALDNLVLEGY 1156

Query: 713  ENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHN 772
             NLK+LP  LH L  LQ   I +CE L  FP  GL +  L  L I GC+ L++LP  M +
Sbjct: 1157 PNLKILPECLHSLKSLQ---IINCEGLECFPARGLSTPTLTSLRIEGCENLKSLPHQMRD 1213

Query: 773  LSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAIS 832
            L SL+ LTI   P +  F EDG+ P NL SLEI   +  K    +  FH  TSL  L I 
Sbjct: 1214 LKSLRDLTILFCPGVESFPEDGM-PPNLISLEISYCENLKK--PISAFHTLTSLFSLTIE 1270

Query: 833  GCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSICDQNLTSLK---LTNCPK 889
                DMVSF  E+      LP  LT L I    +L  LS     QNL SL+   +  CP 
Sbjct: 1271 NVFPDMVSFRDEE----CLLPISLTSLRITAMESLAYLSL----QNLISLQYLEVATCPN 1322

Query: 890  LKYFPEKGLPASLLRLEIKKCPLIEKMCRQDIGPYWHLLIHIPCVLI 936
            L       +PA+L +LEI  CP++E+   ++ G YW  + HIPC+ +
Sbjct: 1323 LGSL--GSMPATLEKLEIWCCPILEERYSKEKGEYWPKIAHIPCIAM 1367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495026|ref|XP_003634900.1| PREDICTED: uncharacterized protein LOC100854556 [Vitis vinifera]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 346/913 (37%), Positives = 494/913 (54%), Gaps = 61/913 (6%)

Query: 1    MHDLVNDLAQWAAGEMYFRMEYISEVNKQQSFSRNLHHLSYIRGDYDGVKRFEDLYDIQH 60
            MHDL++DLAQ  AG + F +E   ++   ++  +   HLS+IR   +  K+FE +   ++
Sbjct: 500  MHDLIHDLAQSIAGNVSFNLE--DKLENNENIFQKARHLSFIRQANEIFKKFEVVDKGKY 557

Query: 61   LRTLLP----VTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRY 116
            LRT L     V+ + S      +     L++++ LRV SL GY +SE+P SI +LS+LRY
Sbjct: 558  LRTFLALPISVSFMKSLSFITTKVTHDLLMEMKCLRVLSLSGYKMSELPSSIDNLSHLRY 617

Query: 117  LNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMP 176
            LNL  + I+ LP SV  LYNL TL+L  C  L +    MGNLI L HL+ + T  LEEMP
Sbjct: 618  LNLCRSSIKRLPNSVGHLYNLQTLILRDCWSLTEMPVGMGNLINLRHLDIAGTSQLEEMP 677

Query: 177  LGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGK 236
              +G LT L TL  F+VGK +GS ++ELK L  L G L+I  L NV+   DA++A L  K
Sbjct: 678  PRMGCLTNLQTLSKFIVGKGNGSSIQELKHLLDLQGELSIQGLHNVRNTRDAVDACLKNK 737

Query: 237  KNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLF 296
             +++ L + W+   +   SR    E  VL++L+P R+L++  +  +GG KFP+W+G   F
Sbjct: 738  CHIEELTMGWSGDFD--DSRNELNEMLVLELLQPQRNLKKLTVEFYGGPKFPSWIGNPSF 795

Query: 297  SNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPI-PFPCLETL 355
            S + +L  ++C  CTS+P +G+L  LK L ++GM +VK +G EF+G  S   PFPCLE+L
Sbjct: 796  SKMESLTLKNCGKCTSLPCLGRLSLLKALRIQGMCKVKTIGDEFFGEVSLFKPFPCLESL 855

Query: 356  HFAEMQEWEEWIPHGCSQEIEG-FPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSL 414
             F +M EWE+W      +E EG F  LREL I  C KL G+LP  L  L  L +     L
Sbjct: 856  RFEDMPEWEDWCFSDMVEECEGLFSCLRELRIRECPKLTGSLPNCLPSLAELEIFECPKL 915

Query: 415  PA-------LCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDIS 467
             A       +C L +  C +VV R+  D  S    +I     L   L+    +L      
Sbjct: 916  KAALPRLAYVCSLNVVECNEVVLRNGVDLSSLTTLNIQRISRLTC-LREGFTQLLAALQK 974

Query: 468  IIIDG---LSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELI 524
            ++I G   ++ +W+N    L+ +  L+ + I +C  L+ LEE+      L   L+HL++ 
Sbjct: 975  LVIRGCGEMTSLWENRFG-LECLRGLESIDIWQCHGLESLEEQR-----LPCNLKHLKIE 1028

Query: 525  NCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWM 584
            NC +L++LP  L SL+ L E+ + +C  L SFPE  LP  LR + +     LK LP  + 
Sbjct: 1029 NCANLQRLPNGLQSLTCLEELSLQSCPKLESFPEMGLPPMLRSLVLQKCNTLKLLPHNY- 1087

Query: 585  LDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSS--RRHTS 642
              N+  LE L+I HC  L      +LP SLKQL+I +C NL+TL      H+S    ++ 
Sbjct: 1088 --NSGFLEYLEIEHCPCLISFPEGELPASLKQLKIKDCANLQTLPEGMMHHNSMVSNNSC 1145

Query: 643  LLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVER-LDNK 701
             LE LEI  C SL  L +             G LP  LK L IW C + + I E+ L + 
Sbjct: 1146 CLEVLEIRKCSSLPSLPT-------------GELPSTLKRLEIWDCRQFQPISEKMLHSN 1192

Query: 702  ISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCK 761
             +LE + I +  N+K+LP  LH L +L    +  C+ LVSFPE GL +  L+ L I  C+
Sbjct: 1193 TALEHLSISNYPNMKILPGFLHSLTYLY---MYGCQGLVSFPERGLPTPNLRDLYINNCE 1249

Query: 762  KLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFH 821
             L++LP  M NL SLQ L I     L  F E GL P NL SL I      K  +   G H
Sbjct: 1250 NLKSLPHQMQNLLSLQELNIRNCQGLESFPECGLAP-NLTSLSIRDCVNLKVPLSEWGLH 1308

Query: 822  RYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSICDQNLTS 881
            R TSL  L ISG    + S   +D      LP+ L++L I    +L  L+     +NL+S
Sbjct: 1309 RLTSLSSLYISGVCPSLASLSDDD----CLLPSTLSKLFISKLDSLACLAL----KNLSS 1360

Query: 882  LK---LTNCPKLK 891
            L+   +  CPKL+
Sbjct: 1361 LERISIYRCPKLR 1373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	943
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.415	0.275	0.407	5.7e-91
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.420	0.376	0.396	1.3e-75
UNIPROTKB|O48647	1802	O48647 "XA1" [Oryza sativa (ta	0.277	0.145	0.297	1.3e-25
TAIR|locus:2053405	1215	AT2G14080 [Arabidopsis thalian	0.407	0.316	0.261	5e-18
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.314	0.250	0.250	8.7e-17
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.311	0.148	0.265	2.6e-14
TAIR|locus:2129221	1147	RPP4 "recognition of peronospo	0.420	0.346	0.280	1.3e-14
TAIR|locus:2129236	1301	SNC1 "SUPPRESSOR OF NPR1-1, CO	0.423	0.306	0.273	1.5e-14
TAIR|locus:2130250	1304	AT4G16920 [Arabidopsis thalian	0.347	0.251	0.271	2.2e-12
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.293	0.231	0.26	2.9e-12

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 677 (243.4 bits), Expect = 5.7e-91, Sum P(3) = 5.7e-91
 Identities = 167/410 (40%), Positives = 230/410 (56%)

Query:     1 MHDLVNDLAQWAAGEMYFRMEYISEVNKQQSFSRNLHHLSYIRGDYDGVKRFEDLYDIQH 60
             MHDL+NDLA+  +G+  FR+E    + +  S +R   H S+ R   D    F  +   + 
Sbjct:   487 MHDLMNDLAKAVSGDFCFRLED-DNIPEIPSTTR---HFSFSRSQCDASVAFRSICGAEF 542

Query:    61 LRTLLPVTLLSSRPGY-LARSIL-PRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLN 118
             LRT+LP    +S     L   +L P L  L  LR+ SL  Y I+ +P S+  L  LRYL+
Sbjct:   543 LRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSLSHYQITNLPKSLKGLKLLRYLD 602

Query:   119 LSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLG 178
             LS T+I+ LPE V  L NL TLLL  CR+L      +  LI L  L+   T  L EMP G
Sbjct:   603 LSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIAELINLRLLDLVGTP-LVEMPPG 661

Query:   179 IGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKN 238
             I KL  L  L NFV+G+ SG+GL ELK L+HL GTL IS+L+NV +  +A +A L  K  
Sbjct:   662 IKKLRSLQKLSNFVIGRLSGAGLHELKELSHLRGTLRISELQNVAFASEAKDAGLKRKPF 721

Query:   239 LKVLMLEWTRSTNGL--SSREAQT--EKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYS 294
             L  L+L+WT   +G    S  A    +K VL ML+PH  L+ FCI  + G  FP WLG S
Sbjct:   722 LDGLILKWTVKGSGFVPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQGGAFPKWLGDS 781

Query:   295 LFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFY---GNDSPIPFPC 351
              F  + ++    C++C S+P VGQLPSLK+L +   + ++++G +F+    N   +PF  
Sbjct:   782 SFFGITSVTLSSCNLCISLPPVGQLPSLKYLSIEKFNILQKVGLDFFFGENNSRGVPFQS 841

Query:   352 LETLHFAEMQEWEEWIPHGCSQEIEG-FPKLRELHIVRCSKLQGTLPTHL 400
             L+ L F  M  W+EWI   C +  +G FP L++L I RC  L+   P  L
Sbjct:   842 LQILKFYGMPRWDEWI---CPELEDGIFPCLQKLIIQRCPSLRKKFPEGL 888

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 702 (252.2 bits), Expect = 1.3e-75, Sum P(2) = 1.3e-75
 Identities = 165/416 (39%), Positives = 241/416 (57%)

Query:     1 MHDLVNDLAQWAAGEMYFRMEYISEVNKQQSFSRNLHHLSYIRGDYDGVKRFEDLYDIQH 60
             MHD +N+LAQ+A+GE   + E   +  K Q  S    +LSY+R +Y     FE L +++ 
Sbjct:   492 MHDFINELAQFASGEFSSKFE---DGCKLQ-VSERTRYLSYLRDNYAEPMEFEALREVKF 547

Query:    61 LRTLLPVTLL-SSRPGYLARSILPRLLK-LQRLRVFSLRGYLISEVP-DSIGDLSYLRYL 117
             LRT LP++L  SSR   L + +  +LL  L RLRV SL  Y I+ +P D   ++S+ R+L
Sbjct:   548 LRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSLSHYKIARLPPDFFKNISHARFL 607

Query:   118 NLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPL 177
             +LS T++  LP+S+  +YNL TLLL  C  LK+   D+ NLI L +L+   T  L +MP 
Sbjct:   608 DLSRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGT-KLRQMPR 666

Query:   178 GIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKK 237
               G+L  L TL  F V    GS + EL  L  L G L I +L+ V  V DA EA L+ KK
Sbjct:   667 RFGRLKSLQTLTTFFVSASDGSRISELGGLHDLHGKLKIVELQRVVDVADAAEANLNSKK 726

Query:   238 NLKVLMLEW----TRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGY 293
             +L+ +   W    + S N  +    Q E  V + L+PHR +E+  I  + G++FP WL  
Sbjct:   727 HLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRRFPDWLSD 786

Query:   294 SLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPI------ 347
               FS +V ++ ++C  CTS+PS+GQLP LK L + GM  ++ +G +FY +D  +      
Sbjct:   787 PSFSRIVCIRLRECQYCTSLPSLGQLPCLKELHISGMVGLQSIGRKFYFSDQQLRDQDQQ 846

Query:   348 PFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLL 403
             PF  LETL F  + +W+EW+    ++  + FP L++L I+RC +L GTLPT L  L
Sbjct:   847 PFRSLETLRFDNLPDWQEWLDVRVTRG-DLFPSLKKLFILRCPELTGTLPTFLPSL 901

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)]

 Score = 219 (82.2 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
 Identities = 83/279 (29%), Positives = 137/279 (49%)

Query:     1 MHDLVNDLAQWAAGEMYFRMEYISEVNKQQSFSRNLHHLS---YIRGDYDGVKR---FED 54
             MHDL++DLAQ  +   Y  ++  SE  +     R+L  ++   Y +  Y  + R   FE 
Sbjct:   627 MHDLMHDLAQKVSQTEYATIDG-SECTELAPSIRHLSIVTDSAYRKEKYRNISRNEVFEK 685

Query:    55 -LYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRG-YLISE-VPDSIGDL 111
              L  ++    L  + L+     +  +       + Q LR+  +   Y  S+    S+ + 
Sbjct:   686 RLMKVKSRSKLRSLVLIGQYDSHFFKYFKDAFKEAQHLRLLQITATYADSDSFLSSLVNS 745

Query:   112 SYLRYLNLSGTQI-RTLPESVNKLYNLHTLLLEGCR-ELKKKCADMGNLIKLHHLNNSNT 169
             ++LRYL +   +  RTLP S+ K Y+L  L + G R  + +   D+ NL+ L HL     
Sbjct:   746 THLRYLKIVTEESGRTLPRSLRKYYHLQVLDI-GYRFGIPRISNDINNLLSLRHL--VAY 802

Query:   170 DSLEEMPLGIGKLTCLLTLCNFVVGKD-SGSGLRELKLLTHLCGTLNISKLENVKYVGDA 228
             D +      IGK+T L  L NF+V  + SG  + +LK +  L   L++S+LENV+   +A
Sbjct:   803 DEVCSSIANIGKMTSLQELGNFIVQNNLSGFEVTQLKSMNKLV-QLSVSQLENVRTQEEA 861

Query:   229 MEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDM 267
               A+L  K++L+ L L W  + NG  S E+  ++   DM
Sbjct:   862 CGAKLKDKQHLEKLHLSWKDAWNGYDSDESYEDEYGSDM 900

GO:0006915 "apoptotic process" evidence=IGI

GO:0006952 "defense response" evidence=IGI

TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 5.0e-18, P = 5.0e-18
 Identities = 112/429 (26%), Positives = 193/429 (44%)

Query:   473 LSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKL 532
             L  +W+     +Q +  LKR+ +     L+ L +        +  LE L L  C  L +L
Sbjct:   663 LEKLWEE----IQPLRNLKRMDLFSSKNLKELPD-----LSSATNLEVLNLNGCSSLVEL 713

Query:   533 PKXXXXXXXXTEMRIHNCSSLVSFPEAVLPS-QLRVISIWDSGALKFLPEAWMLDNNSSL 591
             P          ++ +  CSSL+  P ++  +  L+ I       L  LP +  + N ++L
Sbjct:   714 PFSIGNATKLLKLELSGCSSLLELPSSIGNAINLQTIDFSHCENLVELPSS--IGNATNL 771

Query:   592 EILDIRHCHLLTYI-AGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIH 650
             + LD+  C  L  + + +    +LK+L +  C +L+ L +  G  ++ +   L  C  + 
Sbjct:   772 KELDLSCCSSLKELPSSIGNCTNLKKLHLICCSSLKELPSSIGNCTNLKELHLTCCSSLI 831

Query:   651 SCPS-LTCLISKNEL-RAALDYLV-----VGNLPQALKFLSIWHCSKLESIVERLDNKIS 703
               PS +   I+  +L  A  + LV     +G     LK L++ + S L  +   + N   
Sbjct:   832 KLPSSIGNAINLEKLILAGCESLVELPSFIGKATN-LKILNLGYLSCLVELPSFIGNLHK 890

Query:   704 LEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKL 763
             L  + +  C+ L++LP  ++ L  L E+D+ DC  L +FP   ++S  +KRL + G + +
Sbjct:   891 LSELRLRGCKKLQVLPTNIN-LEFLNELDLTDCILLKTFP---VISTNIKRLHLRGTQ-I 945

Query:   764 EALPEGMHNLSSLQYLTIGGVPSLLCFTE--DGLFPTNLHSLEIDGMKIWKSLMQLGGFH 821
             E +P  + +   L+ L +    +L  F+   + +    L  + I  M  W         +
Sbjct:   946 EEVPSSLRSWPRLEDLQMLYSENLSEFSHVLERITVLELSDINIREMTPW--------LN 997

Query:   822 RYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSICDQNLTS 881
             R T LRRL +SGC + +VS P         L   L  L+  N  +LERL  S  + N+  
Sbjct:   998 RITRLRRLKLSGCGK-LVSLP--------QLSDSLIILDAENCGSLERLGCSFNNPNIKC 1048

Query:   882 LKLTNCPKL 890
             L  TNC KL
Sbjct:  1049 LDFTNCLKL 1057

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 8.7e-17, Sum P(2) = 8.7e-17
 Identities = 78/311 (25%), Positives = 144/311 (46%)

Query:   485 QDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKXXXXXXXXTE 544
             + I  LK + +  C  L+ L +     F  +  L+ L LINC  L +LP          E
Sbjct:   654 EPIRNLKWMDLSFCVNLKELPD-----FSTATNLQELRLINCLSLVELPSSIGNATNLLE 708

Query:   545 MRIHNCSSLVSFPEAVLP-SQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLT 603
             + + +CSSLV  P ++   + L+ + +    +L  LP ++   N +SL+ L++  C  L 
Sbjct:   709 LDLIDCSSLVKLPSSIGNLTNLKKLFLNRCSSLVKLPSSF--GNVTSLKELNLSGCSSLL 766

Query:   604 YI-AGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKN 662
              I + +    +LK++    C +L  L +  G +++ +   LL C  +  CPS    +++ 
Sbjct:   767 EIPSSIGNIVNLKKVYADGCSSLVQLPSSIGNNTNLKELHLLNCSSLMECPSSMLNLTRL 826

Query:   663 E---LRAALDYLVVGNLPQALKFLSIW--HCSKLESIVERLDNKISLEVIEIVSCENLKM 717
             E   L   L  + + ++   +   S++   CS L  +   ++N  +L+ + +  C NL  
Sbjct:   827 EDLNLSGCLSLVKLPSIGNVINLQSLYLSDCSSLMELPFTIENATNLDTLYLDGCSNLLE 886

Query:   718 LPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQ 777
             LP  +  + +LQ + +  C +L   P     +  L+ L +  C  L  LP  +  +S+L 
Sbjct:   887 LPSSIWNITNLQSLYLNGCSSLKELPSLVENAINLQSLSLMKCSSLVELPSSIWRISNLS 946

Query:   778 YLTIGGVPSLL 788
             YL +    SLL
Sbjct:   947 YLDVSNCSSLL 957

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 2.6e-14, P = 2.6e-14
 Identities = 83/313 (26%), Positives = 145/313 (46%)

Query:   591 LEILDIRHC-HLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEI 649
             L++L +  C  +L   +  +    L+ L++  C +L  L +  G   + ++  L  CL +
Sbjct:   713 LQVLCLHGCTSILELPSFTKNVTGLQSLDLNECSSLVELPSSIGNAINLQNLDL-GCLRL 771

Query:   650 HSCP-SLTCL--ISK---NELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKIS 703
                P S+     + K   N   + ++   +GN    L+ L + +CS L  +   + N I+
Sbjct:   772 LKLPLSIVKFTNLKKFILNGCSSLVELPFMGNATN-LQNLDLGNCSSLVELPSSIGNAIN 830

Query:   704 LEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKL 763
             L+ +++ +C +L  LP  +    +L+ +D++ C +LV  P        L RL + GC  L
Sbjct:   831 LQNLDLSNCSSLVKLPSFIGNATNLEILDLRKCSSLVEIPTSIGHVTNLWRLDLSGCSSL 890

Query:   764 EALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQL-GGFHR 822
               LP  + N+S LQ L +    +L+         TNL  L++ G     SL++L      
Sbjct:   891 VELPSSVGNISELQVLNLHNCSNLVKLPSSFGHATNLWRLDLSGCS---SLVELPSSIGN 947

Query:   823 YTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSICDQNLTSL 882
              T+L+ L +  C  ++V  P     +G  L    T L +     LE L S+I  ++L  L
Sbjct:   948 ITNLQELNLCNCS-NLVKLPSS---IGN-LHLLFT-LSLARCQKLEALPSNINLKSLERL 1001

Query:   883 KLTNCPKLKYFPE 895
              LT+C + K FPE
Sbjct:  1002 DLTDCSQFKSFPE 1014

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2129221 RPP4 "recognition of peronospora parasitica 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 125/446 (28%), Positives = 200/446 (44%)

Query:   386 IVRCSKLQ----GTLPT-HLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCES-- 438
             I++ SKL+    GTLP   L  +D+    N   +P L  L I+  +++   + + CES  
Sbjct:   613 IMKYSKLEKLWEGTLPLGSLKKMDLGCSNNLKEIPDL-SLAIN-LEEL---NLSKCESLV 667

Query:   439 QLYKDISNQMFXXXXXXXXXXXXD--ELDISIIIDGLSYIWQNE--TQ-LLQDIATLKRL 493
              L   I N +             D   L+    ++ LS  W +   TQ L+     LKRL
Sbjct:   668 TLPSSIQNAIKLRTLYCSGVLLIDLKSLEGMCNLEYLSVDWSSMEGTQGLIYLPRKLKRL 727

Query:   494 KIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKXXXXXXXXTEMRIHNCSSL 553
               + CP ++ L    + ++ +  R+E+       DLEKL           EM +H    L
Sbjct:   728 WWDYCP-VKRLPSNFKAEYLVELRMEN------SDLEKLWDGTQPLGSLKEMYLHGSKYL 780

Query:   554 VSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLL-TYIAGVQLPP 612
                P+  L   L  + ++   +L  LP +  + N + L  LD+R C  L ++   + L  
Sbjct:   781 KEIPDLSLAINLERLYLFGCESLVTLPSS--IQNATKLINLDMRDCKKLESFPTDLNLE- 837

Query:   613 SLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYL- 671
             SL+ L +  C NLR   A   I     +  +L+  + +      C  +KN L A LDYL 
Sbjct:   838 SLEYLNLTGCPNLRNFPA---IKMGCSYFEILQ--DRNEIEVEDCFWNKN-LPAGLDYLD 891

Query:   672 -VVGNLP-----QALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKL 725
              ++  +P     + L FL +  C K E + E + +  SL+ +++   ENL  +P  L K 
Sbjct:   892 CLMRCMPCEFRPEYLTFLDVSGC-KHEKLWEGIQSLGSLKRMDLSESENLTEIPD-LSKA 949

Query:   726 WHLQEIDIQDCENLVSFPEG-GLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGV 784
              +L+ + +  C++LV+ P   G L  +L RL +  C  LE LP  + NLSSL  L + G 
Sbjct:   950 TNLKRLYLNGCKSLVTLPSTIGNLH-RLVRLEMKECTGLELLPTDV-NLSSLIILDLSGC 1007

Query:   785 PSLLCFTEDGLFPTNLHSLEIDGMKI 810
              SL  F    L  T +  L ++   I
Sbjct:  1008 SSLRTFP---LISTRIECLYLENTAI 1030

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=ISS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2129236 SNC1 "SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
 Identities = 120/439 (27%), Positives = 190/439 (43%)

Query:   500 KLQFLEEEDQWQFGL--SFRLEHLE--LINCQDLEKLPKXXXXXXXXTEMRIHNCSSLVS 555
             KL+ L+ +D     L  +F+ E+L   ++    LEKL +         EM +   ++L  
Sbjct:   569 KLRLLDWDDCPLKSLPSTFKAEYLVNLIMKYSKLEKLWEGTLPLGSLKEMNLRYSNNLKE 628

Query:   556 FPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLL-TYIAGVQLPPSL 614
              P+  L   L  + +    +L  LP +  + N + L  LD+  C  L ++   + L  SL
Sbjct:   629 IPDLSLAINLEELDLVGCKSLVTLPSS--IQNATKLIYLDMSDCKKLESFPTDLNLE-SL 685

Query:   615 KQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYL--V 672
             + L +  C NLR   A   I          E    +      C  +KN L A LDYL  +
Sbjct:   686 EYLNLTGCPNLRNFPA---IKMGCSDVDFPEGR--NEIVVEDCFWNKN-LPAGLDYLDCL 739

Query:   673 VGNLP-----QALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWH 727
                +P     + L FL++    K E + E + +  SLE +++   ENL  +P  L K   
Sbjct:   740 TRCMPCEFRPEQLAFLNV-RGYKHEKLWEGIQSLGSLEGMDLSESENLTEIPD-LSKATK 797

Query:   728 LQEIDIQDCENLVSFPEG-GLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPS 786
             L+ + + +C++LV+ P   G L  +L RL +  C  LE LP  + NLSSL+ L + G  S
Sbjct:   798 LESLILNNCKSLVTLPSTIGNLH-RLVRLEMKECTGLEVLPTDV-NLSSLETLDLSGCSS 855

Query:   787 LLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCD---EDMVSFPL 843
             L  F    L  TN+  L ++   I +    +G  HR   L     +G +    D+    L
Sbjct:   856 LRSFP---LISTNIVWLYLENTAIEEIPSTIGNLHRLVRLEMKKCTGLEVLPTDVNLSSL 912

Query:   844 EDIRLG-----TTLPACLTQLEIFNFPN--LERLSSSICDQNLTSLKLTNCPKLKYFPEK 896
             E + L       + P     ++     N  +E +       NL +LKL NC  L   P  
Sbjct:   913 ETLDLSGCSSLRSFPLISESIKWLYLENTAIEEIPDLSKATNLKNLKLNNCKSLVTLPTT 972

Query:   897 -GLPASLLRLEIKKCPLIE 914
              G    L+  E+K+C  +E
Sbjct:   973 IGNLQKLVSFEMKECTGLE 991

GO:0000166 "nucleotide binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=NAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IGI;IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2130250 AT4G16920 [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 2.2e-12, P = 2.2e-12
 Identities = 103/380 (27%), Positives = 177/380 (46%)

Query:   544 EMRIHNCSSLVSFPEAVLP-SQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCH-L 601
             ++R+ N S L    +   P  +L+ + +  S  LK +P+  +  N   LE +DI  C  L
Sbjct:   731 KLRMEN-SDLEKLWDGTQPLGRLKQMFLRGSKYLKEIPDLSLAIN---LEEVDICKCESL 786

Query:   602 LTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLT----- 656
             +T+ + +Q    L  L+I +C  L +   +  + S   + +L  C  + + P++      
Sbjct:   787 VTFPSSMQNAIKLIYLDISDCKKLESFPTDLNLESLE-YLNLTGCPNLRNFPAIKMGCSD 845

Query:   657 --------------CLISKNELRAALDYL--VVGNLP-----QALKFLSIWHCSKLESIV 695
                           C  +KN L A LDYL  ++  +P     + L FL++  C K E + 
Sbjct:   846 VDFPEGRNEIVVEDCFWNKN-LPAGLDYLDCLMRCMPCEFRPEYLVFLNV-RCYKHEKLW 903

Query:   696 ERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEG-GLLSAKLKR 754
             E + +  SLE +++   ENL  +P  L K  +L+ + + +C++LV+ P   G L  KL R
Sbjct:   904 EGIQSLGSLEEMDLSESENLTEIPD-LSKATNLKHLYLNNCKSLVTLPSTIGNLQ-KLVR 961

Query:   755 LVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSL 814
             L +  C  LE LP  + NLSSL+ L + G  SL  F    L   ++  L ++   I + +
Sbjct:   962 LEMKECTGLEVLPTDV-NLSSLETLDLSGCSSLRTFP---LISKSIKWLYLENTAI-EEI 1016

Query:   815 MQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSI 874
             + L    + T L  L ++ C + +V+ P     +G      L +L +     LE L + +
Sbjct:  1017 LDLS---KATKLESLILNNC-KSLVTLPST---IGNLQN--LRRLYMKRCTGLEVLPTDV 1067

Query:   875 CDQNLTSLKLTNCPKLKYFP 894
                +L  L L+ C  L+ FP
Sbjct:  1068 NLSSLGILDLSGCSSLRTFP 1087

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
 Identities = 78/300 (26%), Positives = 144/300 (48%)

Query:   473 LSYI-WQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEK 531
             LSY  +  E   L     L+ LK+  C  L  L    +    L+  L+ L+L NC  LEK
Sbjct:   721 LSYSSYLKELPNLSTATNLEELKLRNCSSLVELPSSIE---KLT-SLQILDLENCSSLEK 776

Query:   532 LPKXXXXXXXXTEMRIHNCSSLVSFPEAV-LPSQLRVISIWDSGALKFLPEAWMLDNNSS 590
             LP          E+++ NCSSL+  P ++   + L+ ++I    +L  LP +  + + + 
Sbjct:   777 LP-AIENATKLRELKLQNCSSLIELPLSIGTATNLKQLNISGCSSLVKLPSS--IGDITD 833

Query:   591 LEILDIRHCH-LLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEI 649
             LE+ D+ +C  L+T  + +    +L +L +  C  L  L     + S     +L +C ++
Sbjct:   834 LEVFDLSNCSSLVTLPSSIGNLQNLCKLIMRGCSKLEALPININLKSLDT-LNLTDCSQL 892

Query:   650 HSCPSLTCLISKNELRAALDYLVVGNLPQALKF---LSIWHCSKLESIVERLDNKISLEV 706
              S P ++  IS  ELR  L    +  +P ++     L+ +  S  ES++E   +   + +
Sbjct:   893 KSFPEISTHIS--ELR--LKGTAIKEVPLSIMSWSPLADFQISYFESLME-FPHAFDI-I 946

Query:   707 IEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEAL 766
              ++   ++++ +P  + ++  L+++ + +C NLVS P+   LS  L  +    CK LE L
Sbjct:   947 TKLHLSKDIQEVPPWVKRMSRLRDLSLNNCNNLVSLPQ---LSDSLDYIYADNCKSLERL 1003

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	943
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-12
PLN03210	1153	PLN03210, PLN03210, Resistant to P	4e-10
PLN03210	1153	PLN03210, PLN03210, Resistant to P	4e-08
PRK15386	426	PRK15386, PRK15386, type III secretion protein Gog	2e-05

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 71.4 bits (175), Expect = 2e-12
 Identities = 72/254 (28%), Positives = 109/254 (42%), Gaps = 28/254 (11%)

Query: 689 SKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLL 748
           SKLE + + + +   L  I++   +NLK +P  L    +L+ + + DC +LV  P     
Sbjct: 621 SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQY 679

Query: 749 SAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCF--------------TEDG 794
             KL+ L +  C+ LE LP G+ NL SL  L + G   L  F              T   
Sbjct: 680 LNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE 738

Query: 795 LFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPA 854
            FP+NL    +D + + +  M+              ++     +    L DI     LP+
Sbjct: 739 EFPSNLRLENLDELILCE--MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS 796

Query: 855 C------LTQLEIFNFPNLERLSSSICDQNLTSLKLTNCPKLKYFPEKGLPASLLRLE-- 906
                  L  LEI N  NLE L + I  ++L SL L+ C +L+ FP+     S L L   
Sbjct: 797 SIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRT 856

Query: 907 -IKKCPL-IEKMCR 918
            I++ P  IEK   
Sbjct: 857 GIEEVPWWIEKFSN 870

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 63.7 bits (155), Expect = 4e-10
 Identities = 76/294 (25%), Positives = 130/294 (44%), Gaps = 37/294 (12%)

Query: 516 FRLEHL-ELINCQD-LEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDS 573
           FR E+L +L      LEKL   + SL+ L  + +    +L   P+  + + L  + + D 
Sbjct: 608 FRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDC 667

Query: 574 GALKFLPEAWMLDNNSSLEILDIRHC-HLLTYIAGVQLPPSLKQLEIYNCDNLRTL---- 628
            +L  LP +  +   + LE LD+  C +L     G+ L  SL +L +  C  L++     
Sbjct: 668 SSLVELPSS--IQYLNKLEDLDMSRCENLEILPTGINLK-SLYRLNLSGCSRLKSFPDIS 724

Query: 629 ----------TAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQ 678
                     TA E   S+ R  +L E   +  C   +    K   R      ++  L  
Sbjct: 725 TNISWLDLDETAIEEFPSNLRLENLDE---LILCEMKS---EKLWERVQPLTPLMTMLSP 778

Query: 679 ALKFLSIWHCSKLESIVE---RLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQD 735
           +L  L +   S + S+VE    + N   LE +EI +C NL+ LP G++ L  L+ +D+  
Sbjct: 779 SLTRLFL---SDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGIN-LESLESLDLSG 834

Query: 736 CENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLC 789
           C  L +FP+   +S  +  L +     +E +P  +   S+L +L + G  +L  
Sbjct: 835 CSRLRTFPD---ISTNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQR 884

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 57.2 bits (138), Expect = 4e-08
 Identities = 72/281 (25%), Positives = 116/281 (41%), Gaps = 64/281 (22%)

Query: 490 LKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHN 549
           L+ LK+  C  L  L    Q+   L+ +LE L++  C++LE LP  + +L SL  + +  
Sbjct: 659 LETLKLSDCSSLVELPSSIQY---LN-KLEDLDMSRCENLEILPTGI-NLKSLYRLNLSG 713

Query: 550 CSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRH----------- 598
           CS L SFP+  + + +  + + D  A++  P    L+N   L + +++            
Sbjct: 714 CSRLKSFPD--ISTNISWLDL-DETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLT 770

Query: 599 ------CHLLTYI------AGVQLPPS------LKQLEIYNCDNLRTLTAEEGIHSSRRH 640
                    LT +      + V+LP S      L+ LEI NC NL TL     + S    
Sbjct: 771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLES---- 826

Query: 641 TSLLECLEIHSCPSLTCL--ISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERL 698
              LE L++  C  L     IS N     L    +  +P        W   K        
Sbjct: 827 ---LESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVP--------WWIEKF------- 868

Query: 699 DNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENL 739
               +L  +++  C NL+ +   + KL HL+ +D  DC  L
Sbjct: 869 ---SNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906

syringae 6; Provisional. Length = 1153

>gnl|CDD|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 62/190 (32%)

Query: 593 ILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSC 652
            L I+ C +   +    LP  L ++ I NC+NL TL                        
Sbjct: 56  RLYIKDCDI-ESLP--VLPNELTEITIENCNNLTTLP----------------------- 89

Query: 653 PSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSC 712
                                G++P+ L+ L++ HC ++  + E +    SLE I+  + 
Sbjct: 90  ---------------------GSIPEGLEKLTVCHCPEISGLPESVR---SLE-IKGSAT 124

Query: 713 ENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKL---EALPEG 769
           +++K +P+GL  L     I+  + EN        L+S  LK L + GC  +   E LPE 
Sbjct: 125 DSIKNVPNGLTSL----SINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLPES 178

Query: 770 MH--NLSSLQ 777
           +    L   Q
Sbjct: 179 LQSITLHIEQ 188

Length = 426

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	943
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.96
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.95
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.95
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.95
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.94
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.94
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.91
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.89
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.85
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.75
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.7
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.63
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.62
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.54
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.53
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.52
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.38
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.23
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.16
KOG4341	483	consensus F-box protein containing LRR [General fu	98.99
KOG4341	483	consensus F-box protein containing LRR [General fu	98.98
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.88
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.79
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.79
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.76
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.73
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.71
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.7
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.64
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.63
PRK15386	426	type III secretion protein GogB; Provisional	98.62
PRK15386	426	type III secretion protein GogB; Provisional	98.61
PLN03150	623	hypothetical protein; Provisional	98.58
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.55
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.54
PLN03150	623	hypothetical protein; Provisional	98.47
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.43
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.31
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.28
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.25
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.21
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.19
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.08
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.03
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.96
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.9
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.9
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.69
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.67
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.67
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.6
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.29
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.23
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.21
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.19
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.17
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.17
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.99
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.63
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.46
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.33
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.29
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.11
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.95
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.55
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.51
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.15
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.93
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.23
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.89
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.78
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.75
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.4
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.36
smart00370	26	LRR Leucine-rich repeats, outliers.	92.36
smart00370	26	LRR Leucine-rich repeats, outliers.	87.04
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.04
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	80.08

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.2e-45  Score=457.28  Aligned_cols=552  Identities=17%  Similarity=0.216  Sum_probs=296.6

Q ss_pred             HhhccceEEEecccccccccccCCceeEEEEEeccCccccccccccccccccEEeecccCCCCCCcchhccchhhh-ccC
Q 002284           11 WAAGEMYFRMEYISEVNKQQSFSRNLHHLSYIRGDYDGVKRFEDLYDIQHLRTLLPVTLLSSRPGYLARSILPRLL-KLQ   89 (943)
Q Consensus        11 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~-~l~   89 (943)
                      |-+.++||.|.+.    .+ ....+++.+.+..+.+.... ...+..+++|++|.+.      +|.+.+.+|.+++ .++
T Consensus        51 w~~~~~~c~w~gv----~c-~~~~~v~~L~L~~~~i~~~~-~~~~~~l~~L~~L~Ls------~n~~~~~ip~~~~~~l~  118 (968)
T PLN00113         51 WNSSADVCLWQGI----TC-NNSSRVVSIDLSGKNISGKI-SSAIFRLPYIQTINLS------NNQLSGPIPDDIFTTSS  118 (968)
T ss_pred             CCCCCCCCcCcce----ec-CCCCcEEEEEecCCCccccC-ChHHhCCCCCCEEECC------CCccCCcCChHHhccCC
Confidence            4445567777665    22 22346777777655443222 1345566667766543      3345566666666 677


Q ss_pred             cccEEEecCccccc-cCccccCCCCCceeecCCCccc-ccchhhhhccccceeecCCCcccccccHHHhccccCceEEcC
Q 002284           90 RLRVFSLRGYLISE-VPDSIGDLSYLRYLNLSGTQIR-TLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNS  167 (943)
Q Consensus        90 ~L~~L~L~~n~i~~-lp~~~~~l~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~  167 (943)
                      +||+|+|++|.+.. +|.  +.+++|++|+|++|.+. .+|..|+++++|++|++++|...+.+|..|+++++|++|+++
T Consensus       119 ~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  196 (968)
T PLN00113        119 SLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA  196 (968)
T ss_pred             CCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence            77777777766543 343  44666777777777665 456667777777777777766556666667777777777777


Q ss_pred             CCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEee
Q 002284          168 NTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWT  247 (943)
Q Consensus       168 ~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n  247 (943)
                      +|.+.+.+|..++++++|++|                                                      ++++|
T Consensus       197 ~n~l~~~~p~~l~~l~~L~~L------------------------------------------------------~L~~n  222 (968)
T PLN00113        197 SNQLVGQIPRELGQMKSLKWI------------------------------------------------------YLGYN  222 (968)
T ss_pred             CCCCcCcCChHHcCcCCccEE------------------------------------------------------ECcCC
Confidence            766555555555555554444                                                      33333


Q ss_pred             cCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCeeE
Q 002284          248 RSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLE  326 (943)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~  326 (943)
                      .++                                  ..+|..+..  +++|++|++++|.+.+.+| .++.+++|++|+
T Consensus       223 ~l~----------------------------------~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  266 (968)
T PLN00113        223 NLS----------------------------------GEIPYEIGG--LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF  266 (968)
T ss_pred             ccC----------------------------------CcCChhHhc--CCCCCEEECcCceeccccChhHhCCCCCCEEE
Confidence            321                                  112222221  4444555555554444444 444455555555


Q ss_pred             EecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCcccEEeeccCCCccCCCCCCCCCccEE
Q 002284          327 VRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDIL  406 (943)
Q Consensus       327 L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L  406 (943)
                      +++|.....++..+..      +++|++|++++|.     +.+..|..+..+++|++|++++ |.+.+.+|..+      
T Consensus       267 L~~n~l~~~~p~~l~~------l~~L~~L~Ls~n~-----l~~~~p~~~~~l~~L~~L~l~~-n~~~~~~~~~~------  328 (968)
T PLN00113        267 LYQNKLSGPIPPSIFS------LQKLISLDLSDNS-----LSGEIPELVIQLQNLEILHLFS-NNFTGKIPVAL------  328 (968)
T ss_pred             CcCCeeeccCchhHhh------ccCcCEEECcCCe-----eccCCChhHcCCCCCcEEECCC-CccCCcCChhH------
Confidence            5544422222211111      2333333333332     0111223334455555555555 34444444321      


Q ss_pred             EEeccCCCCccceEEeccCCceeeeccCcccchhhhccccccccCCCccccCCCCceeeeeEeecCccccccchhhhhhc
Q 002284          407 VVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQD  486 (943)
Q Consensus       407 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~  486 (943)
                           ..+++|+.|++++|.                      +.                           ...+..+..
T Consensus       329 -----~~l~~L~~L~L~~n~----------------------l~---------------------------~~~p~~l~~  354 (968)
T PLN00113        329 -----TSLPRLQVLQLWSNK----------------------FS---------------------------GEIPKNLGK  354 (968)
T ss_pred             -----hcCCCCCEEECcCCC----------------------Cc---------------------------CcCChHHhC
Confidence                 223333333333322                      11                           111123445


Q ss_pred             ccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCC-CCCCc
Q 002284          487 IATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAV-LPSQL  565 (943)
Q Consensus       487 l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~-~~~~L  565 (943)
                      +++|+.|++++|.....++..    +..+++|+.|++++|.+.+.+|..+..+++|+.|++++|...+.+|... .++.|
T Consensus       355 ~~~L~~L~Ls~n~l~~~~p~~----~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L  430 (968)
T PLN00113        355 HNNLTVLDLSTNNLTGEIPEG----LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV  430 (968)
T ss_pred             CCCCcEEECCCCeeEeeCChh----HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC
Confidence            566677777666533333332    5666777777777777777777777777777777777776555554422 25677


Q ss_pred             cEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCcCCCCCCceEEeccCcCccccccccCcccccccCCccc
Q 002284          566 RVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLE  645 (943)
Q Consensus       566 ~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~  645 (943)
                      +.|++++|...+.++..+  ..+++|++|++++|.+.+.+|.....++|+.|++++|.-...++.               
T Consensus       431 ~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~---------------  493 (968)
T PLN00113        431 YFLDISNNNLQGRINSRK--WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR---------------  493 (968)
T ss_pred             CEEECcCCcccCccChhh--ccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccCh---------------
Confidence            777777777655555442  256777777777776665555433334455555555432111110               


Q ss_pred             eeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCC
Q 002284          646 CLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKL  725 (943)
Q Consensus       646 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l  725 (943)
                                                ....+ ++|+.|++++|...+.+|..+.++++|++|++++|.+.+.+|..+..+
T Consensus       494 --------------------------~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  546 (968)
T PLN00113        494 --------------------------KLGSL-SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM  546 (968)
T ss_pred             --------------------------hhhhh-hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc
Confidence                                      00111 345666666665555566666666666666666666666666666666


Q ss_pred             CCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCC
Q 002284          726 WHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSL  787 (943)
Q Consensus       726 ~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l  787 (943)
                      ++|++|++++|...+.+|..+..+++|+.|++++|+..+.+|.. +.+..+....+.+|+.+
T Consensus       547 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~l  607 (968)
T PLN00113        547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDL  607 (968)
T ss_pred             ccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccc
Confidence            66666666666555566665555666666666666666656542 33334444444555433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=8e-43  Score=431.95  Aligned_cols=534  Identities=19%  Similarity=0.200  Sum_probs=384.2

Q ss_pred             ccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCcccc-ccCccc-cCCCCCceeecCCCcccc-cchhhhhcc
Q 002284           59 QHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLIS-EVPDSI-GDLSYLRYLNLSGTQIRT-LPESVNKLY  135 (943)
Q Consensus        59 ~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~-~lp~~~-~~l~~L~~L~Ls~n~i~~-lp~~i~~L~  135 (943)
                      .+++.|.+.+      |.+.+.+++.+..+++|++|+|++|.+. .+|..+ ..+++||+|+|++|++.. +|.  +.++
T Consensus        69 ~~v~~L~L~~------~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~  140 (968)
T PLN00113         69 SRVVSIDLSG------KNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP  140 (968)
T ss_pred             CcEEEEEecC------CCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccC
Confidence            4566665533      3456666666668888888888888765 567655 478888888888887763 453  4577


Q ss_pred             ccceeecCCCcccccccHHHhccccCceEEcCCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCcee
Q 002284          136 NLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLN  215 (943)
Q Consensus       136 ~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~  215 (943)
                      +|++|++++|...+.+|..|+++++|++|++++|.+.+.+|..++++++|+                             
T Consensus       141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-----------------------------  191 (968)
T PLN00113        141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE-----------------------------  191 (968)
T ss_pred             CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCC-----------------------------
Confidence            888888888876667777788888888888888775556665555444444                             


Q ss_pred             ecccccccCccchhhcccCCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCC
Q 002284          216 ISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSL  295 (943)
Q Consensus       216 ~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~  295 (943)
                                               +|++++|.++                                  ..+|..+..  
T Consensus       192 -------------------------~L~L~~n~l~----------------------------------~~~p~~l~~--  210 (968)
T PLN00113        192 -------------------------FLTLASNQLV----------------------------------GQIPRELGQ--  210 (968)
T ss_pred             -------------------------eeeccCCCCc----------------------------------CcCChHHcC--
Confidence                                     3444433331                                  133444433  


Q ss_pred             cCCeeEEEEeCCCCCCCCC-CCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCc
Q 002284          296 FSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQE  374 (943)
Q Consensus       296 l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  374 (943)
                      +++|++|++++|.+.+.+| .++.+++|++|++++|.....++..+..      +++|++|++++|..     .+..|..
T Consensus       211 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~L~~n~l-----~~~~p~~  279 (968)
T PLN00113        211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN------LKNLQYLFLYQNKL-----SGPIPPS  279 (968)
T ss_pred             cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC------CCCCCEEECcCCee-----eccCchh
Confidence            7889999999999988887 7889999999999998754444443332      66677777766641     1223445


Q ss_pred             cccCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEEeccCCceeeeccCcccchhhhccccccccCCCc
Q 002284          375 IEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPL  454 (943)
Q Consensus       375 ~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~  454 (943)
                      +..+++|++|++++ +++.+.+|..+           ..+++|+.|++++|.                      +.    
T Consensus       280 l~~l~~L~~L~Ls~-n~l~~~~p~~~-----------~~l~~L~~L~l~~n~----------------------~~----  321 (968)
T PLN00113        280 IFSLQKLISLDLSD-NSLSGEIPELV-----------IQLQNLEILHLFSNN----------------------FT----  321 (968)
T ss_pred             HhhccCcCEEECcC-CeeccCCChhH-----------cCCCCCcEEECCCCc----------------------cC----
Confidence            56666777777776 45555555432           233444444443332                      21    


Q ss_pred             cccCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccch
Q 002284          455 KLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPK  534 (943)
Q Consensus       455 ~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  534 (943)
                                             ...+..+..+++|+.|++++|.....++..    +..+++|+.|++++|.+.+.+|.
T Consensus       322 -----------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~----l~~~~~L~~L~Ls~n~l~~~~p~  374 (968)
T PLN00113        322 -----------------------GKIPVALTSLPRLQVLQLWSNKFSGEIPKN----LGKHNNLTVLDLSTNNLTGEIPE  374 (968)
T ss_pred             -----------------------CcCChhHhcCCCCCEEECcCCCCcCcCChH----HhCCCCCcEEECCCCeeEeeCCh
Confidence                                   122234567788888888888644444443    77788899999999888888888


Q ss_pred             hccCCCCcCeeeccCCCCCcccCCC-CCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCc-CCCC
Q 002284          535 SLLSLSSLTEMRIHNCSSLVSFPEA-VLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGV-QLPP  612 (943)
Q Consensus       535 ~~~~l~~L~~L~L~~n~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~  612 (943)
                      .+..+++|+.|++++|.....+|.. ..+++|+.|++++|...+.+|..+  ..+++|+.|++++|.+.+.++.. ..++
T Consensus       375 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  452 (968)
T PLN00113        375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF--TKLPLVYFLDISNNNLQGRINSRKWDMP  452 (968)
T ss_pred             hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH--hcCCCCCEEECcCCcccCccChhhccCC
Confidence            8888888999999988766666543 236788888888888776777664  47888888888888876655542 3456


Q ss_pred             CCceEEeccCcCccccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCch
Q 002284          613 SLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLE  692 (943)
Q Consensus       613 ~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~  692 (943)
                      +|+.|++++|.-...+|..                                           .-.++|+.|++++|...+
T Consensus       453 ~L~~L~L~~n~~~~~~p~~-------------------------------------------~~~~~L~~L~ls~n~l~~  489 (968)
T PLN00113        453 SLQMLSLARNKFFGGLPDS-------------------------------------------FGSKRLENLDLSRNQFSG  489 (968)
T ss_pred             CCcEEECcCceeeeecCcc-------------------------------------------cccccceEEECcCCccCC
Confidence            6777777777543333310                                           001479999999998888


Q ss_pred             hhHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCC
Q 002284          693 SIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHN  772 (943)
Q Consensus       693 ~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~  772 (943)
                      .+|..+.++++|+.|++++|.+.+.+|..+.++++|++|+|++|...+.+|..+..+++|+.|++++|...+.+|..+..
T Consensus       490 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  569 (968)
T PLN00113        490 AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN  569 (968)
T ss_pred             ccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhc
Confidence            88889999999999999999999999999999999999999999888899998989999999999999999999999999


Q ss_pred             CCCCCceeecCCCCCccccCCCCCCCCcceEEecCCcchh
Q 002284          773 LSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWK  812 (943)
Q Consensus       773 l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~  812 (943)
                      +++|+.|++++|+....+|.... +.++....+.+|+.+-
T Consensus       570 l~~L~~l~ls~N~l~~~~p~~~~-~~~~~~~~~~~n~~lc  608 (968)
T PLN00113        570 VESLVQVNISHNHLHGSLPSTGA-FLAINASAVAGNIDLC  608 (968)
T ss_pred             CcccCEEeccCCcceeeCCCcch-hcccChhhhcCCcccc
Confidence            99999999999998888887644 4566666677776543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.96  E-value=2.2e-32  Score=269.69  Aligned_cols=267  Identities=23%  Similarity=0.298  Sum_probs=163.4

Q ss_pred             ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284           87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN  166 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l  166 (943)
                      .-.-+..|++++|.+..+-+.+.++..|.+|++++|++.++|++|+.+..++.|+.++|. +..+|+.++.+.+|++|+.
T Consensus        43 ~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~  121 (565)
T KOG0472|consen   43 EQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDC  121 (565)
T ss_pred             hhcchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhc
Confidence            445566677777777776666777777777777777777777777777777777777764 6667777777777777777


Q ss_pred             CCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEe
Q 002284          167 SNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEW  246 (943)
Q Consensus       167 ~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  246 (943)
                      ++|. ..++|.+++.+-.|..++..                                                      .
T Consensus       122 s~n~-~~el~~~i~~~~~l~dl~~~------------------------------------------------------~  146 (565)
T KOG0472|consen  122 SSNE-LKELPDSIGRLLDLEDLDAT------------------------------------------------------N  146 (565)
T ss_pred             cccc-eeecCchHHHHhhhhhhhcc------------------------------------------------------c
Confidence            7777 66666666655544444110                                                      1


Q ss_pred             ecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCCCCCCCCCCCeeE
Q 002284          247 TRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLE  326 (943)
Q Consensus       247 n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~  326 (943)
                      |                                   .....|..++.  +.++..+++.+|++....|..-.+..|++|+
T Consensus       147 N-----------------------------------~i~slp~~~~~--~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld  189 (565)
T KOG0472|consen  147 N-----------------------------------QISSLPEDMVN--LSKLSKLDLEGNKLKALPENHIAMKRLKHLD  189 (565)
T ss_pred             c-----------------------------------ccccCchHHHH--HHHHHHhhccccchhhCCHHHHHHHHHHhcc
Confidence            1                                   11222322222  4445555555555444433222244455544


Q ss_pred             EecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCcccEEeeccCCCccCCCCCCCCCccEE
Q 002284          327 VRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDIL  406 (943)
Q Consensus       327 L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L  406 (943)
                      .-.|- ++.                                   +|..++.+.+|+.|++.. |++. .+|.        
T Consensus       190 ~~~N~-L~t-----------------------------------lP~~lg~l~~L~~LyL~~-Nki~-~lPe--------  223 (565)
T KOG0472|consen  190 CNSNL-LET-----------------------------------LPPELGGLESLELLYLRR-NKIR-FLPE--------  223 (565)
T ss_pred             cchhh-hhc-----------------------------------CChhhcchhhhHHHHhhh-cccc-cCCC--------
Confidence            43331 111                                   234445555555566655 5555 4553        


Q ss_pred             EEeccCCCCccceEEeccCCceeeeccCcccchhhhccccccccCCCccccCCCCceeeeeEeecCccccccchhhhhhc
Q 002284          407 VVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQD  486 (943)
Q Consensus       407 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~  486 (943)
                          |+                      +|..+..+.++.|++                           ..++.....+
T Consensus       224 ----f~----------------------gcs~L~Elh~g~N~i---------------------------~~lpae~~~~  250 (565)
T KOG0472|consen  224 ----FP----------------------GCSLLKELHVGENQI---------------------------EMLPAEHLKH  250 (565)
T ss_pred             ----CC----------------------ccHHHHHHHhcccHH---------------------------HhhHHHHhcc
Confidence                23                      333333444433333                           2344455567


Q ss_pred             ccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCC
Q 002284          487 IATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSS  552 (943)
Q Consensus       487 l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~  552 (943)
                      ++++..|++.+|. ++.+|++    +..+.+|+.||+++|.+ ..+|..++++ .|+.|.+.||+.
T Consensus       251 L~~l~vLDLRdNk-lke~Pde----~clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  251 LNSLLVLDLRDNK-LKEVPDE----ICLLRSLERLDLSNNDI-SSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             cccceeeeccccc-cccCchH----HHHhhhhhhhcccCCcc-ccCCcccccc-eeeehhhcCCch
Confidence            7888888888884 8888877    77888999999999855 5688889999 999999999983

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.95  E-value=2.4e-32  Score=269.38  Aligned_cols=468  Identities=21%  Similarity=0.216  Sum_probs=278.3

Q ss_pred             cccccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhh
Q 002284           54 DLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNK  133 (943)
Q Consensus        54 ~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~  133 (943)
                      +..++..+.+|.+.++.       ..+.|+++..+..++.|+.++|++..+|+.++.+..|+.|+.++|.+.++|++|+.
T Consensus        63 dl~nL~~l~vl~~~~n~-------l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~  135 (565)
T KOG0472|consen   63 DLKNLACLTVLNVHDNK-------LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGR  135 (565)
T ss_pred             hhhcccceeEEEeccch-------hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHH
Confidence            44455556666554432       45778888888888888888888888888888888888888888888888888888


Q ss_pred             ccccceeecCCCcccccccHHHhccccCceEEcCCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCc
Q 002284          134 LYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGT  213 (943)
Q Consensus       134 L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~  213 (943)
                      +..|+.|+..+|+ +..+|++++.+.+|..|++.+|. +..+|++.-.|+.|++|+...+--  +..+.+++.++.|. .
T Consensus       136 ~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~L--~tlP~~lg~l~~L~-~  210 (565)
T KOG0472|consen  136 LLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNLL--ETLPPELGGLESLE-L  210 (565)
T ss_pred             Hhhhhhhhccccc-cccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhhh--hcCChhhcchhhhH-H
Confidence            8888888888875 77788888888888888888888 777777655588888885443322  22333344443332 2


Q ss_pred             eeecccccccCccchhhcccCCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCC
Q 002284          214 LNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGY  293 (943)
Q Consensus       214 l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~  293 (943)
                      +++.+.+..      +...|.++..|.+++++.|.+..           -.-+.++.++.+..|+++.+...+.|+.+..
T Consensus       211 LyL~~Nki~------~lPef~gcs~L~Elh~g~N~i~~-----------lpae~~~~L~~l~vLDLRdNklke~Pde~cl  273 (565)
T KOG0472|consen  211 LYLRRNKIR------FLPEFPGCSLLKELHVGENQIEM-----------LPAEHLKHLNSLLVLDLRDNKLKEVPDEICL  273 (565)
T ss_pred             HHhhhcccc------cCCCCCccHHHHHHHhcccHHHh-----------hHHHHhcccccceeeeccccccccCchHHHH
Confidence            222221111      11136777778888877776531           1123456788999999999999999998876


Q ss_pred             CCcCCeeEEEEeCCCCCCCCCCCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeeccc-cccccc---cccc
Q 002284          294 SLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAE-MQEWEE---WIPH  369 (943)
Q Consensus       294 ~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~l~~---~~~~  369 (943)
                        +.+|++||+++|.+++..+.++++ .|+.|.+.||+. ..+..+.........++.|+.-...+ ...-++   -...
T Consensus       274 --LrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPl-rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t  349 (565)
T KOG0472|consen  274 --LRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPL-RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT  349 (565)
T ss_pred             --hhhhhhhcccCCccccCCcccccc-eeeehhhcCCch-HHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence              889999999999998877799999 999999999983 33322222211111122222100000 000000   0000


Q ss_pred             ---ccCCccccCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEEeccCCceeeeccCcccchhhhcccc
Q 002284          370 ---GCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISN  446 (943)
Q Consensus       370 ---~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ls~  446 (943)
                         ........+...+.|++++ -+++ .+|...          |..                    ..-.-....+++.
T Consensus       350 ~~~~~~~~~~~~i~tkiL~~s~-~qlt-~VPdEV----------fea--------------------~~~~~Vt~Vnfsk  397 (565)
T KOG0472|consen  350 LPSESFPDIYAIITTKILDVSD-KQLT-LVPDEV----------FEA--------------------AKSEIVTSVNFSK  397 (565)
T ss_pred             CCCCcccchhhhhhhhhhcccc-cccc-cCCHHH----------HHH--------------------hhhcceEEEeccc
Confidence               0000112244566666666 5555 555322          000                    0001122334444


Q ss_pred             ccccCCCccc-cCCCC-ceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEe
Q 002284          447 QMFLGGPLKL-QLPKL-DELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELI  524 (943)
Q Consensus       447 n~l~~~~~~~-~l~~L-~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~  524 (943)
                      |++...|... .+..+ +.+.++      ++...+.+.....+++|..|++++|. +..+|.+    +..+..|+.|+++
T Consensus       398 NqL~elPk~L~~lkelvT~l~ls------nn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e----~~~lv~Lq~LnlS  466 (565)
T KOG0472|consen  398 NQLCELPKRLVELKELVTDLVLS------NNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEE----MGSLVRLQTLNLS  466 (565)
T ss_pred             chHhhhhhhhHHHHHHHHHHHhh------cCccccchHHHHhhhcceeeecccch-hhhcchh----hhhhhhhheeccc
Confidence            4444433211 11111 111222      11222334445566666666666664 5666655    5666667777777


Q ss_pred             cCCCcCccchhccCCCCcCeeeccCCCCCcccCCCC--CCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCc
Q 002284          525 NCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAV--LPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLL  602 (943)
Q Consensus       525 ~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~  602 (943)
                      .|++ ..+|..+..+..++.+-.++|+ ++.+++.+  .+.+|.+|++.+|. +..+|..  ++++++|++|++++|++-
T Consensus       467 ~NrF-r~lP~~~y~lq~lEtllas~nq-i~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~--LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  467 FNRF-RMLPECLYELQTLETLLASNNQ-IGSVDPSGLKNMRNLTTLDLQNND-LQQIPPI--LGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cccc-ccchHHHhhHHHHHHHHhcccc-ccccChHHhhhhhhcceeccCCCc-hhhCChh--hccccceeEEEecCCccC
Confidence            7743 4566655555556555555554 55555442  25677777776666 5556655  457777777777777754

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.95  E-value=4.2e-29  Score=257.80  Aligned_cols=362  Identities=19%  Similarity=0.214  Sum_probs=204.3

Q ss_pred             CcccEEEecCcccccc-CccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEcC
Q 002284           89 QRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNS  167 (943)
Q Consensus        89 ~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~  167 (943)
                      ..-++||+++|.+..+ +..|.++++|+.+++..|.++.||...+...+|+.|+|.+|.+...-.+++.-++.||.|||+
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            3446788888888877 567788888888888888888888777777778888888886545555568888888888888


Q ss_pred             CCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEee
Q 002284          168 NTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWT  247 (943)
Q Consensus       168 ~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n  247 (943)
                      .|. +.++|..                                                     .+....+++.|+|++|
T Consensus       158 rN~-is~i~~~-----------------------------------------------------sfp~~~ni~~L~La~N  183 (873)
T KOG4194|consen  158 RNL-ISEIPKP-----------------------------------------------------SFPAKVNIKKLNLASN  183 (873)
T ss_pred             hch-hhcccCC-----------------------------------------------------CCCCCCCceEEeeccc
Confidence            887 5555421                                                     1344467778888888


Q ss_pred             cCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCeeE
Q 002284          248 RSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLE  326 (943)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~  326 (943)
                      +++....           ..|.                         .+.+|..|.|++|+++...+ .|..+++|+.|+
T Consensus       184 ~It~l~~-----------~~F~-------------------------~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld  227 (873)
T KOG4194|consen  184 RITTLET-----------GHFD-------------------------SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD  227 (873)
T ss_pred             ccccccc-----------cccc-------------------------ccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence            7753222           1222                         24456666666666644444 555566666666


Q ss_pred             EecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCcccEEeeccCCCccCCCCCCCCCccEE
Q 002284          327 VRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDIL  406 (943)
Q Consensus       327 L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L  406 (943)
                      |..|..-...+..|.|      +++|+.|.+..|.. ....    ...|-.+.++++|+++. |++. .+....      
T Consensus       228 LnrN~irive~ltFqg------L~Sl~nlklqrN~I-~kL~----DG~Fy~l~kme~l~L~~-N~l~-~vn~g~------  288 (873)
T KOG4194|consen  228 LNRNRIRIVEGLTFQG------LPSLQNLKLQRNDI-SKLD----DGAFYGLEKMEHLNLET-NRLQ-AVNEGW------  288 (873)
T ss_pred             ccccceeeehhhhhcC------chhhhhhhhhhcCc-cccc----Ccceeeecccceeeccc-chhh-hhhccc------
Confidence            6666522222444444      56666666655531 1111    23344566666666666 5555 332211      


Q ss_pred             EEeccCCCCccceEEeccCCc--eeeeccCcccchhhhccccccccCCC--ccccCCCCceeeeeEeecCccccccchhh
Q 002284          407 VVQNFTSLPALCKLRIDRCKK--VVWRSTTDCESQLYKDISNQMFLGGP--LKLQLPKLDELDISIIIDGLSYIWQNETQ  482 (943)
Q Consensus       407 ~~~~~~~l~~L~~L~l~~~~~--~~~~~~~~~~~l~~l~ls~n~l~~~~--~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~  482 (943)
                          +-++.+|+.|+++.|..  +...+-..+++|++|+|++|.++..+  .+..+..|++|.|+     .+.+..+...
T Consensus       289 ----lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs-----~Nsi~~l~e~  359 (873)
T KOG4194|consen  289 ----LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS-----HNSIDHLAEG  359 (873)
T ss_pred             ----ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccc-----ccchHHHHhh
Confidence                23344444455544442  22233344555556666666665542  22355556666665     3444445555


Q ss_pred             hhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCC-
Q 002284          483 LLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVL-  561 (943)
Q Consensus       483 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~-  561 (943)
                      .|.++++|++|++++|..--.+.+. ...|.++++|+.|++.+|++-..-..+|.++++|++|+|.+|. +.++....| 
T Consensus       360 af~~lssL~~LdLr~N~ls~~IEDa-a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe  437 (873)
T KOG4194|consen  360 AFVGLSSLHKLDLRSNELSWCIEDA-AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFE  437 (873)
T ss_pred             HHHHhhhhhhhcCcCCeEEEEEecc-hhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc-ceeecccccc
Confidence            5666666666666665422222222 1225566666666666664433333356666666666666665 233333222 


Q ss_pred             CCCccEEEE
Q 002284          562 PSQLRVISI  570 (943)
Q Consensus       562 ~~~L~~L~l  570 (943)
                      +..|+.|.+
T Consensus       438 ~m~Lk~Lv~  446 (873)
T KOG4194|consen  438 PMELKELVM  446 (873)
T ss_pred             cchhhhhhh
Confidence            334555543

>PLN03210 Resistant to P

Probab=99.95  E-value=9.9e-27  Score=287.11  Aligned_cols=186  Identities=19%  Similarity=0.234  Sum_probs=125.7

Q ss_pred             CchhHHHHHHHhhccce-------EEEecccc--cccccccCCceeEEEEEeccCcccc-ccccccccccccEEeecccC
Q 002284            1 MHDLVNDLAQWAAGEMY-------FRMEYISE--VNKQQSFSRNLHHLSYIRGDYDGVK-RFEDLYDIQHLRTLLPVTLL   70 (943)
Q Consensus         1 mHDl~~dla~~~~~~e~-------~~~~~~~~--~~~~~~~~~~~~~ls~~~~~~~~~~-~~~~~~~~~~Lr~L~~~~~~   70 (943)
                      |||++||||++++.++.       +.|....-  ........++++++++......... .-..|.++++|+.|.+....
T Consensus       490 MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~  569 (1153)
T PLN03210        490 MHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKK  569 (1153)
T ss_pred             hhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccc
Confidence            99999999999987653       34433200  0001123467888887654443211 12356788888888775542


Q ss_pred             CCCCCcchhccchhhhcc-CcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccc
Q 002284           71 SSRPGYLARSILPRLLKL-QRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELK  149 (943)
Q Consensus        71 ~l~~~~~~~~~~~~~~~l-~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~  149 (943)
                      .-..+.+...+|.++..+ .+||.|++.++.+..+|..| ...+|++|++++|.+..+|..+..+++|++|++++|..++
T Consensus       570 ~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~  648 (1153)
T PLN03210        570 WDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK  648 (1153)
T ss_pred             ccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC
Confidence            111223345667777644 56888888888888888877 4688888888888888888888888888888888877677


Q ss_pred             cccHHHhccccCceEEcCCCCCCcccccccccccccccc
Q 002284          150 KKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTL  188 (943)
Q Consensus       150 ~~p~~~~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L  188 (943)
                      .+|. ++.+++|++|++++|..+..+|..++.+++|+.|
T Consensus       649 ~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L  686 (1153)
T PLN03210        649 EIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL  686 (1153)
T ss_pred             cCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence            7774 7778888888888877566666555555444444

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.94  E-value=3e-28  Score=251.47  Aligned_cols=391  Identities=18%  Similarity=0.203  Sum_probs=247.7

Q ss_pred             cCCceeEEEEEeccCccccccccccc--cccccEEeecccCCCCCCcchhccchhhh-ccCcccEEEecCccccccCccc
Q 002284           32 FSRNLHHLSYIRGDYDGVKRFEDLYD--IQHLRTLLPVTLLSSRPGYLARSILPRLL-KLQRLRVFSLRGYLISEVPDSI  108 (943)
Q Consensus        32 ~~~~~~~ls~~~~~~~~~~~~~~~~~--~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~lp~~~  108 (943)
                      .+...+-+......++... ...+..  .+.-++|.+      ++|.+. .+-..+| ++++|+.+.+.+|.++.+|...
T Consensus        50 c~c~~~lldcs~~~lea~~-~~~l~g~lp~~t~~Ldl------snNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~  121 (873)
T KOG4194|consen   50 CPCNTRLLDCSDRELEAID-KSRLKGFLPSQTQTLDL------SNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFG  121 (873)
T ss_pred             CCCCceeeecCcccccccc-ccccCCcCccceeeeec------cccccc-cCcHHHHhcCCcceeeeeccchhhhccccc
Confidence            4455555555555444322 122222  234566755      344444 4444445 9999999999999999999888


Q ss_pred             cCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccH-HHhccccCceEEcCCCCCCcccccc-ccccccc
Q 002284          109 GDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCA-DMGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCL  185 (943)
Q Consensus       109 ~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~-~~~~L~~L~~L~l~~n~~~~~~p~~-~~~L~~L  185 (943)
                      ....||+.|+|.+|.|+++. +++..++.|+.|||+.|. +..+|. .|..-.++++|+|++|. ++.+-.+ |..+.+|
T Consensus       122 ~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL  199 (873)
T KOG4194|consen  122 HESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSL  199 (873)
T ss_pred             ccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccc-ccccccccccccchh
Confidence            88889999999999999994 689999999999999985 666665 48888899999999999 6666543 6666655


Q ss_pred             cccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEeecCCCCCCchhhhhHHhhh
Q 002284          186 LTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVL  265 (943)
Q Consensus       186 ~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l  265 (943)
                      .+|.+..+                        ++...  .    ...|+++++|+.|+|..|++..           ...
T Consensus       200 ~tlkLsrN------------------------rittL--p----~r~Fk~L~~L~~LdLnrN~iri-----------ve~  238 (873)
T KOG4194|consen  200 LTLKLSRN------------------------RITTL--P----QRSFKRLPKLESLDLNRNRIRI-----------VEG  238 (873)
T ss_pred             eeeecccC------------------------ccccc--C----HHHhhhcchhhhhhccccceee-----------ehh
Confidence            55522111                        11000  0    1114555666666666555420           001


Q ss_pred             ccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCeeEEecCcCceeeCccccCCC
Q 002284          266 DMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLEVRGMSRVKRLGSEFYGND  344 (943)
Q Consensus       266 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~  344 (943)
                      -.|+.                         +++|+.|.+..|.+...-. .|.++.++++|+|+.|+....-....+|  
T Consensus       239 ltFqg-------------------------L~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg--  291 (873)
T KOG4194|consen  239 LTFQG-------------------------LPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG--  291 (873)
T ss_pred             hhhcC-------------------------chhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc--
Confidence            12233                         4555555555555544333 4555555555555555543333333344  


Q ss_pred             CCCCCCCcceeecccccccccccccccCCccccCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEEecc
Q 002284          345 SPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDR  424 (943)
Q Consensus       345 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~  424 (943)
                          +.+|+.|++++|. ++.+    -++.....++|++|++++ |+++ .++..-          |..+..|++|.++ 
T Consensus       292 ----Lt~L~~L~lS~Na-I~ri----h~d~WsftqkL~~LdLs~-N~i~-~l~~~s----------f~~L~~Le~LnLs-  349 (873)
T KOG4194|consen  292 ----LTSLEQLDLSYNA-IQRI----HIDSWSFTQKLKELDLSS-NRIT-RLDEGS----------FRVLSQLEELNLS-  349 (873)
T ss_pred             ----cchhhhhccchhh-hhee----ecchhhhcccceeEeccc-cccc-cCChhH----------HHHHHHhhhhccc-
Confidence                5555555555553 1111    123445677888888888 7777 555422          3334444444444 


Q ss_pred             CCceeeeccCcccchhhhccccccccCC--CccccCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcc
Q 002284          425 CKKVVWRSTTDCESQLYKDISNQMFLGG--PLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQ  502 (943)
Q Consensus       425 ~~~~~~~~~~~~~~l~~l~ls~n~l~~~--~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  502 (943)
                                           +|.++..  .++..+.+|+.|||+  .|.++.+-.-....|.++++|+.|.+.+|. ++
T Consensus       350 ---------------------~Nsi~~l~e~af~~lssL~~LdLr--~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk  405 (873)
T KOG4194|consen  350 ---------------------HNSIDHLAEGAFVGLSSLHKLDLR--SNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LK  405 (873)
T ss_pred             ---------------------ccchHHHHhhHHHHhhhhhhhcCc--CCeEEEEEecchhhhccchhhhheeecCce-ee
Confidence                                 4444433  233345555555555  444444434456678889999999999994 88


Q ss_pred             cchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCC
Q 002284          503 FLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNC  550 (943)
Q Consensus       503 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n  550 (943)
                      .++...   |.++++|++|++.+|.+...-|.+|..+ .|++|.+..-
T Consensus       406 ~I~krA---fsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs  449 (873)
T KOG4194|consen  406 SIPKRA---FSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS  449 (873)
T ss_pred             ecchhh---hccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence            898877   9999999999999999888889999988 8999987653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.94  E-value=5.6e-29  Score=271.30  Aligned_cols=130  Identities=22%  Similarity=0.230  Sum_probs=86.7

Q ss_pred             ccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccceeee
Q 002284          678 QALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVI  757 (943)
Q Consensus       678 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l  757 (943)
                      ..|+.|++.+|......++.+.++.+|++|++++|+....-...+.++..|++|+||+| .++.+|.....++.|++|..
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~a  437 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRA  437 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhh
Confidence            35666677776666666667777777777777777554433345567777777777777 67777777777777777777


Q ss_pred             ccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCC-CCcceEEecCCcch
Q 002284          758 YGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFP-TNLHSLEIDGMKIW  811 (943)
Q Consensus       758 ~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~L~~L~l~~c~~l  811 (943)
                      .+|. +..+| .+..++.|+.+|++.|..-...-.... + ++|++||++||..+
T Consensus       438 hsN~-l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  438 HSNQ-LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             cCCc-eeech-hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCccc
Confidence            7765 55666 667777777777776653322222222 3 77777777777753

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.93  E-value=8e-28  Score=262.35  Aligned_cols=456  Identities=22%  Similarity=0.211  Sum_probs=280.5

Q ss_pred             chhhh-ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhcccc
Q 002284           82 LPRLL-KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIK  160 (943)
Q Consensus        82 ~~~~~-~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~  160 (943)
                      |-++. +.-+|++||+++|.+..+|..+..+.+|+.|+++.|.|..+|.+++++.+|++|.|..| ....+|.++..+++
T Consensus        37 pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lkn  115 (1081)
T KOG0618|consen   37 PLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKN  115 (1081)
T ss_pred             chHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhc
Confidence            33343 44448888888888888888888888888888888888888888888888888888876 47788888888888


Q ss_pred             CceEEcCCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCC
Q 002284          161 LHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLK  240 (943)
Q Consensus       161 L~~L~l~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~  240 (943)
                      |++|++++|. .+.+|.-+..++.+..+....+..........   ..++  .+..+.+..      .+...+..+.+  
T Consensus       116 l~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~---ik~~--~l~~n~l~~------~~~~~i~~l~~--  181 (1081)
T KOG0618|consen  116 LQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTS---IKKL--DLRLNVLGG------SFLIDIYNLTH--  181 (1081)
T ss_pred             ccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhcccc---chhh--hhhhhhccc------chhcchhhhhe--
Confidence            8888888888 77778777777776666443331111111001   1111  111111110      01111111222  


Q ss_pred             eEEEEeecCCCCCCchhhhhHHhhhccC-C----------CCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCC
Q 002284          241 VLMLEWTRSTNGLSSREAQTEKGVLDML-K----------PHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSM  309 (943)
Q Consensus       241 ~L~l~~n~~~~~~~~~~~~~~~~~l~~l-~----------~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~  309 (943)
                      .|++.+|.++...-..     ...++.+ +          .-++++.|+...+.....-..   ..-.+|++++++.|++
T Consensus       182 ~ldLr~N~~~~~dls~-----~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~l  253 (1081)
T KOG0618|consen  182 QLDLRYNEMEVLDLSN-----LANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH---PVPLNLQYLDISHNNL  253 (1081)
T ss_pred             eeecccchhhhhhhhh-----ccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc---cccccceeeecchhhh
Confidence            3555544442000000     0000000 0          112444444444443321111   1245788888888877


Q ss_pred             CCCCCCCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCcccEEeeccC
Q 002284          310 CTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRC  389 (943)
Q Consensus       310 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c  389 (943)
                      .+...+++.+.+|+.+...+|.. ..++...+.      ..+|+.|...+|. ++.     +|.....+..|++|++.. 
T Consensus       254 ~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~------~~~L~~l~~~~ne-l~y-----ip~~le~~~sL~tLdL~~-  319 (1081)
T KOG0618|consen  254 SNLPEWIGACANLEALNANHNRL-VALPLRISR------ITSLVSLSAAYNE-LEY-----IPPFLEGLKSLRTLDLQS-  319 (1081)
T ss_pred             hcchHHHHhcccceEecccchhH-HhhHHHHhh------hhhHHHHHhhhhh-hhh-----CCCcccccceeeeeeehh-
Confidence            55544777788888888877764 333333332      5677777777663 332     345566788899999988 


Q ss_pred             CCccCCCCCCCCCccEEEEeccCCCCc-cceEEeccCCceeeecc--CcccchhhhccccccccCC--CccccCCCCcee
Q 002284          390 SKLQGTLPTHLTLLDILVVQNFTSLPA-LCKLRIDRCKKVVWRST--TDCESQLYKDISNQMFLGG--PLKLQLPKLDEL  464 (943)
Q Consensus       390 ~~l~~~~p~~l~~L~~L~~~~~~~l~~-L~~L~l~~~~~~~~~~~--~~~~~l~~l~ls~n~l~~~--~~~~~l~~L~~L  464 (943)
                      |++. .+|..+          +..... ++.+..+.+........  ...+.++.|++.+|.+++.  |....+.+|+.|
T Consensus       320 N~L~-~lp~~~----------l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVL  388 (1081)
T KOG0618|consen  320 NNLP-SLPDNF----------LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVL  388 (1081)
T ss_pred             cccc-ccchHH----------HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeee
Confidence            7886 777633          222222 44455554443333322  2467789999999999886  677788889999


Q ss_pred             eeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCe
Q 002284          465 DISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTE  544 (943)
Q Consensus       465 ~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  544 (943)
                      +|+     .+.+..++...+.++..|++|++++|. ++.++..    +..+..|++|...+|.+ ..+| .+..+++|+.
T Consensus       389 hLs-----yNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~t----va~~~~L~tL~ahsN~l-~~fP-e~~~l~qL~~  456 (1081)
T KOG0618|consen  389 HLS-----YNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDT----VANLGRLHTLRAHSNQL-LSFP-ELAQLPQLKV  456 (1081)
T ss_pred             eec-----ccccccCCHHHHhchHHhHHHhcccch-hhhhhHH----HHhhhhhHHHhhcCCce-eech-hhhhcCcceE
Confidence            988     677777888888888888888888884 7777755    67888888888888744 4566 6778888888


Q ss_pred             eeccCCCCCcccCCCCCC-CCccEEEEecCCCCCcCccccccCCCCCccEEEeecC
Q 002284          545 MRIHNCSSLVSFPEAVLP-SQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHC  599 (943)
Q Consensus       545 L~L~~n~~l~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n  599 (943)
                      +|++.|......-....+ ++|++||+++|.....-...  +..+.++..+++.-+
T Consensus       457 lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~--l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  457 LDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKT--LKVLKSLSQMDITLN  510 (1081)
T ss_pred             EecccchhhhhhhhhhCCCcccceeeccCCcccccchhh--hHHhhhhhheecccC
Confidence            888888754433334445 88888888888743222111  223445555555444

>PLN03210 Resistant to P

Probab=99.92  E-value=2.4e-24  Score=266.04  Aligned_cols=343  Identities=22%  Similarity=0.290  Sum_probs=218.6

Q ss_pred             cCccceeceEEEecCC------CcCccchhccCCC-CcCeeeccCCCCCcccCCCCCCCCccEEEEecCCCCCcCccccc
Q 002284          512 FGLSFRLEHLELINCQ------DLEKLPKSLLSLS-SLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWM  584 (943)
Q Consensus       512 ~~~l~~L~~L~l~~~~------~~~~~~~~~~~l~-~L~~L~L~~n~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  584 (943)
                      |.++++|+.|.+.++.      ....+|..+..++ +|+.|++.+++ ++.+|....+.+|+.|++.+|. +..++..  
T Consensus       554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~--  629 (1153)
T PLN03210        554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNFRPENLVKLQMQGSK-LEKLWDG--  629 (1153)
T ss_pred             HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcCCccCCcEEECcCcc-ccccccc--
Confidence            5566666666665432      1113444444443 46667766664 5556655556667777776665 4444444  


Q ss_pred             cCCCCCccEEEeecCCCcccccCcCCCCCCceEEeccCcCccccccccCcccccccCCccceeeeecCCCcccccchhhH
Q 002284          585 LDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNEL  664 (943)
Q Consensus       585 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~  664 (943)
                      .+.+++|++|++++|..++.+|.....++|+.|++.+|..+..+|.      .+..+++|+.|++.+|.+++.+      
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~------si~~L~~L~~L~L~~c~~L~~L------  697 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPS------SIQYLNKLEDLDMSRCENLEIL------  697 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccch------hhhccCCCCEEeCCCCCCcCcc------
Confidence            2356777777777666666666656666677777777766666552      2355667777777777766655      


Q ss_pred             HHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCc----
Q 002284          665 RAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLV----  740 (943)
Q Consensus       665 ~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~----  740 (943)
                             +.+.-+++|+.|++++|..++.+|..   .++|+.|++++|.+ ..+|..+ .+++|++|++.++....    
T Consensus       698 -------p~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i-~~lP~~~-~l~~L~~L~l~~~~~~~l~~~  765 (1153)
T PLN03210        698 -------PTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI-EEFPSNL-RLENLDELILCEMKSEKLWER  765 (1153)
T ss_pred             -------CCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc-ccccccc-cccccccccccccchhhcccc
Confidence                   22222356777777777766666533   35677777777663 4456544 46777777777653211    


Q ss_pred             --ccC-cCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceEEecCCcchhccccc
Q 002284          741 --SFP-EGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQL  817 (943)
Q Consensus       741 --~~p-~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  817 (943)
                        .++ .....+++|+.|++++|+.++.+|.+++++++|+.|++++|..++.+|... .+++|+.|++++|..+...+. 
T Consensus       766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-  843 (1153)
T PLN03210        766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-  843 (1153)
T ss_pred             ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-
Confidence              111 112224578888888887777788888888888888888888787777765 367888888888877765442 


Q ss_pred             cCCCCCCCccEEEecCCCCcCcccCcccccccCCCCCCccEEEeecCCCCccccccc-CCCCCCeEeecCCCCCccCCC
Q 002284          818 GGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSI-CDQNLTSLKLTNCPKLKYFPE  895 (943)
Q Consensus       818 ~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~C~~L~~~~~  895 (943)
                          ..++|++|++++  +.++.+|...     ..+++|+.|++.+|++++.++... .+++|+.|.+++|++|+.++.
T Consensus       844 ----~~~nL~~L~Ls~--n~i~~iP~si-----~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l  911 (1153)
T PLN03210        844 ----ISTNISDLNLSR--TGIEEVPWWI-----EKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW  911 (1153)
T ss_pred             ----cccccCEeECCC--CCCccChHHH-----hcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence                236788888877  4566666533     356778888888888888776532 567777888888888876643

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.91  E-value=7.5e-27  Score=242.62  Aligned_cols=252  Identities=19%  Similarity=0.209  Sum_probs=167.3

Q ss_pred             CcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCCCCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCc
Q 002284          273 SLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCL  352 (943)
Q Consensus       273 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L  352 (943)
                      ++-.|.+++|.+..+|..++ -.++.|-.|+|++|++...+|....+..|++|.|++|+....--..      ..++++|
T Consensus       127 n~iVLNLS~N~IetIPn~lf-inLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ------LPsmtsL  199 (1255)
T KOG0444|consen  127 NSIVLNLSYNNIETIPNSLF-INLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ------LPSMTSL  199 (1255)
T ss_pred             CcEEEEcccCccccCCchHH-HhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc------Cccchhh
Confidence            33344444445566666555 2467778888888888666667778888888888888732110000      1124455


Q ss_pred             ceeecccccccccccccccCCccccCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEEeccCCceeeec
Q 002284          353 ETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRS  432 (943)
Q Consensus       353 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~~~  432 (943)
                      +.|++++......-    +|..+..+.+|..+|++. |++. .+|..+           -.+++|+.|++++|....   
T Consensus       200 ~vLhms~TqRTl~N----~Ptsld~l~NL~dvDlS~-N~Lp-~vPecl-----------y~l~~LrrLNLS~N~ite---  259 (1255)
T KOG0444|consen  200 SVLHMSNTQRTLDN----IPTSLDDLHNLRDVDLSE-NNLP-IVPECL-----------YKLRNLRRLNLSGNKITE---  259 (1255)
T ss_pred             hhhhcccccchhhc----CCCchhhhhhhhhccccc-cCCC-cchHHH-----------hhhhhhheeccCcCceee---
Confidence            55555554321111    466777788888888887 7776 667543           234455555555544222   


Q ss_pred             cCcccchhhhccccccccCCCccccCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhc
Q 002284          433 TTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQF  512 (943)
Q Consensus       433 ~~~~~~l~~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~  512 (943)
                                         .            .+.                .....+|++|++++|. ++.+|..    +
T Consensus       260 -------------------L------------~~~----------------~~~W~~lEtLNlSrNQ-Lt~LP~a----v  287 (1255)
T KOG0444|consen  260 -------------------L------------NMT----------------EGEWENLETLNLSRNQ-LTVLPDA----V  287 (1255)
T ss_pred             -------------------e------------ecc----------------HHHHhhhhhhccccch-hccchHH----H
Confidence                               1            111                1234566777777774 7777766    7


Q ss_pred             CccceeceEEEecCCCc-CccchhccCCCCcCeeeccCCCCCcccCCCCC-CCCccEEEEecCCCCCcCccccccCCCCC
Q 002284          513 GLSFRLEHLELINCQDL-EKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVL-PSQLRVISIWDSGALKFLPEAWMLDNNSS  590 (943)
Q Consensus       513 ~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~  590 (943)
                      ..+++|+.|.+.+|+.. .-+|++++++.+|+++...+|. ++-+|+... +..|+.|.++.|+ +-.+|..+  +-++.
T Consensus       288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaI--HlL~~  363 (1255)
T KOG0444|consen  288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNR-LITLPEAI--HLLPD  363 (1255)
T ss_pred             hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhcccccc-eeechhhh--hhcCC
Confidence            88899999999888653 3589999999999999999884 777776554 7889999998888 56678774  36899


Q ss_pred             ccEEEeecCCCcccccC
Q 002284          591 LEILDIRHCHLLTYIAG  607 (943)
Q Consensus       591 L~~L~l~~n~~~~~~~~  607 (943)
                      |+.||+..|+.+...|.
T Consensus       364 l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  364 LKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             cceeeccCCcCccCCCC
Confidence            99999999988776554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.89  E-value=2.7e-25  Score=231.15  Aligned_cols=367  Identities=21%  Similarity=0.260  Sum_probs=208.6

Q ss_pred             ceeEEEEEeccCccccccccccccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCccccccCccccCCCCC
Q 002284           35 NLHHLSYIRGDYDGVKRFEDLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYL  114 (943)
Q Consensus        35 ~~~~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L  114 (943)
                      =||.+.+..+++....-......++.++.|.+.+..       ...+|.++..+.+|+.|.+++|++..+-..++.|+.|
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-------L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~L   80 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-------LEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRL   80 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHHhhheeEEEechhh-------hhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhh
Confidence            355555555544322111234456666666664432       3456666667777777777777766666666667777


Q ss_pred             ceeecCCCccc--ccchhhhhccccceeecCCCcccccccHHHhccccCceEEcCCCCCCcccccc-ccccccccccCce
Q 002284          115 RYLNLSGTQIR--TLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLLTLCNF  191 (943)
Q Consensus       115 ~~L~Ls~n~i~--~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~~p~~-~~~L~~L~~L~~~  191 (943)
                      |.+++++|++.  .||..|-+|..|.+|||++|. +...|..+..-+++-+|++++|+ +..+|.. +-+|+.|-.|++.
T Consensus        81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS  158 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLS  158 (1255)
T ss_pred             HHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccc
Confidence            77777777655  456666677777777777764 66666667666777777777776 6666654 4555555555322


Q ss_pred             EeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCC
Q 002284          192 VVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPH  271 (943)
Q Consensus       192 ~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~  271 (943)
                      .+                        .+       +.++..+..+.+|++|.+++|++.           .-.+..+..+
T Consensus       159 ~N------------------------rL-------e~LPPQ~RRL~~LqtL~Ls~NPL~-----------hfQLrQLPsm  196 (1255)
T KOG0444|consen  159 NN------------------------RL-------EMLPPQIRRLSMLQTLKLSNNPLN-----------HFQLRQLPSM  196 (1255)
T ss_pred             cc------------------------hh-------hhcCHHHHHHhhhhhhhcCCChhh-----------HHHHhcCccc
Confidence            11                        11       222333455566666666666541           1122333344


Q ss_pred             CCcceEEEEeeC--CCCCCcccCCCCcCCeeEEEEeCCCCCCCCCCCCCCCCCCeeEEecCcCceeeCccccCCCCCCCC
Q 002284          272 RSLEQFCISGFG--GKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPF  349 (943)
Q Consensus       272 ~~L~~L~l~~~~--~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~  349 (943)
                      +.|+.|.+++..  ...+|..+..  +.+|..++++.|.+...+..+..+++|+.|+|++|.. +.+.            
T Consensus       197 tsL~vLhms~TqRTl~N~Ptsld~--l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i-teL~------------  261 (1255)
T KOG0444|consen  197 TSLSVLHMSNTQRTLDNIPTSLDD--LHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI-TELN------------  261 (1255)
T ss_pred             hhhhhhhcccccchhhcCCCchhh--hhhhhhccccccCCCcchHHHhhhhhhheeccCcCce-eeee------------
Confidence            455555555543  2355665543  6677777777776643333566667777777777652 1111            


Q ss_pred             CCcceeecccccccccccccccCCccccCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEEeccCCcee
Q 002284          350 PCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVV  429 (943)
Q Consensus       350 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~  429 (943)
                                             ...+.-.+|++|+++. |+++ .+|..+           ..++.|+.|.+.+|....
T Consensus       262 -----------------------~~~~~W~~lEtLNlSr-NQLt-~LP~av-----------cKL~kL~kLy~n~NkL~F  305 (1255)
T KOG0444|consen  262 -----------------------MTEGEWENLETLNLSR-NQLT-VLPDAV-----------CKLTKLTKLYANNNKLTF  305 (1255)
T ss_pred             -----------------------ccHHHHhhhhhhcccc-chhc-cchHHH-----------hhhHHHHHHHhccCcccc
Confidence                                   1123345677777777 6776 666543           233344444433332110


Q ss_pred             eeccCcccchhhhccccccccCCCccccCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhh
Q 002284          430 WRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQ  509 (943)
Q Consensus       430 ~~~~~~~~~l~~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~  509 (943)
                                          .|+|                            +-.+.+.+|+.+..++| ++.-+|++  
T Consensus       306 --------------------eGiP----------------------------SGIGKL~~Levf~aanN-~LElVPEg--  334 (1255)
T KOG0444|consen  306 --------------------EGIP----------------------------SGIGKLIQLEVFHAANN-KLELVPEG--  334 (1255)
T ss_pred             --------------------cCCc----------------------------cchhhhhhhHHHHhhcc-ccccCchh--
Confidence                                0111                            11234455555555555 35555655  


Q ss_pred             hhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccC
Q 002284          510 WQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFP  557 (943)
Q Consensus       510 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~  557 (943)
                        +..+..|+.|.++.|+.+ .+|.++.-++.|+.||+..|+.+.-.|
T Consensus       335 --lcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  335 --LCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             --hhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence              677788888888877554 577777778888888888887665433

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.85  E-value=2.5e-21  Score=225.58  Aligned_cols=300  Identities=26%  Similarity=0.271  Sum_probs=194.3

Q ss_pred             CchhHHHHHHHhhc-----cceEEEecc--cccccccccCCceeEEEEEeccCccccccccccccccccEEeecccCCCC
Q 002284            1 MHDLVNDLAQWAAG-----EMYFRMEYI--SEVNKQQSFSRNLHHLSYIRGDYDGVKRFEDLYDIQHLRTLLPVTLLSSR   73 (943)
Q Consensus         1 mHDl~~dla~~~~~-----~e~~~~~~~--~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~l~   73 (943)
                      |||+|||+|.|+|+     .|.+++...  .........+..+||+++..+.....   ..-..+++|+||.+..+.+  
T Consensus       483 mHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~---~~~~~~~~L~tLll~~n~~--  557 (889)
T KOG4658|consen  483 MHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHI---AGSSENPKLRTLLLQRNSD--  557 (889)
T ss_pred             eeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhc---cCCCCCCccceEEEeecch--
Confidence            99999999999999     454444431  01112233457899999998876432   3345677999999987641  


Q ss_pred             CCcchhccchhhh-ccCcccEEEecCcc-ccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccc
Q 002284           74 PGYLARSILPRLL-KLQRLRVFSLRGYL-ISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKK  151 (943)
Q Consensus        74 ~~~~~~~~~~~~~-~l~~L~~L~L~~n~-i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~  151 (943)
                         -...++.+|| .++.||+|||++|. ++.+|++|++|.+||||+|+++.|+.+|..+++|..|.+|++.++.....+
T Consensus       558 ---~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~  634 (889)
T KOG4658|consen  558 ---WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI  634 (889)
T ss_pred             ---hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc
Confidence               1467788888 89999999999886 889999999999999999999999999999999999999999998777777


Q ss_pred             cHHHhccccCceEEcCCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccC---ceeecccccccCccch
Q 002284          152 CADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCG---TLNISKLENVKYVGDA  228 (943)
Q Consensus       152 p~~~~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~---~l~~~~l~~~~~~~~~  228 (943)
                      |..+..|.+||+|.+.... ...-...++.+.+|++|..+.....+...+..+..+..|+.   .+.+..     .....
T Consensus       635 ~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~-----~~~~~  708 (889)
T KOG4658|consen  635 PGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEG-----CSKRT  708 (889)
T ss_pred             cchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcc-----cccce
Confidence            7778889999999998765 22222335666677777555554433322233333333320   111111     12223


Q ss_pred             hhcccCCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccCC---CCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEe
Q 002284          229 MEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLK---PHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQ  305 (943)
Q Consensus       229 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~---~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~  305 (943)
                      ....+..+.+|+.|.+....+.....        .......   .++++..+.+.++.....+.|...  .++|+.|.+.
T Consensus       709 ~~~~~~~l~~L~~L~i~~~~~~e~~~--------~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f--~~~L~~l~l~  778 (889)
T KOG4658|consen  709 LISSLGSLGNLEELSILDCGISEIVI--------EWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLF--APHLTSLSLV  778 (889)
T ss_pred             eecccccccCcceEEEEcCCCchhhc--------ccccccchhhhHHHHHHHHhhccccccccchhhc--cCcccEEEEe
Confidence            34446677788888887666532111        0000000   122344444445555555666532  6777777777


Q ss_pred             CCCCCCCC-CCCCCCCCCCe
Q 002284          306 DCSMCTSM-PSVGQLPSLKH  324 (943)
Q Consensus       306 ~n~~~~~~-~~~~~l~~L~~  324 (943)
                      .|...+.+ |....+..++.
T Consensus       779 ~~~~~e~~i~~~k~~~~l~~  798 (889)
T KOG4658|consen  779 SCRLLEDIIPKLKALLELKE  798 (889)
T ss_pred             cccccccCCCHHHHhhhccc
Confidence            77664433 34444444444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.75  E-value=2e-20  Score=185.49  Aligned_cols=110  Identities=29%  Similarity=0.356  Sum_probs=61.4

Q ss_pred             hhccchhhh-ccCcccEEEecCcccccc-CccccCCCCCceeecCC-Ccccccc-hhhhhccccceeecCCCcccccccH
Q 002284           78 ARSILPRLL-KLQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSG-TQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCA  153 (943)
Q Consensus        78 ~~~~~~~~~-~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~-n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~  153 (943)
                      ...+|+..| .+++||.|||++|.|+.| |++|.+++.|-.|-+.+ |+|+.+| ..|++|..|+.|.+.-|...-...+
T Consensus        79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~  158 (498)
T KOG4237|consen   79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQD  158 (498)
T ss_pred             cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHH
Confidence            345555555 566666666666666655 55666666555555544 5566665 3556666666666655543333344


Q ss_pred             HHhccccCceEEcCCCCCCcccccc-cccccccccc
Q 002284          154 DMGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLLTL  188 (943)
Q Consensus       154 ~~~~L~~L~~L~l~~n~~~~~~p~~-~~~L~~L~~L  188 (943)
                      .|..|++|..|.+.+|. +..++.+ |..+..++++
T Consensus       159 al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tl  193 (498)
T KOG4237|consen  159 ALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTL  193 (498)
T ss_pred             HHHHhhhcchhcccchh-hhhhccccccchhccchH
Confidence            46666666666666655 5555542 5555555554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.70  E-value=7.3e-19  Score=174.54  Aligned_cols=89  Identities=19%  Similarity=0.192  Sum_probs=59.3

Q ss_pred             cCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCC--CCCccEEEEecCCCCCcCccccccCCCC
Q 002284          512 FGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVL--PSQLRVISIWDSGALKFLPEAWMLDNNS  589 (943)
Q Consensus       512 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~l~  589 (943)
                      |..+++|++|++++|++.++-+.+|.++..+++|+|..|+ +..+....+  +..|++|++.+|++....|..  +..+.
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a--F~~~~  346 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA--FQTLF  346 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEeccc--ccccc
Confidence            6667777777777776666666677777777777777774 444444333  566777777777755555555  34677


Q ss_pred             CccEEEeecCCCcc
Q 002284          590 SLEILDIRHCHLLT  603 (943)
Q Consensus       590 ~L~~L~l~~n~~~~  603 (943)
                      +|.+|.+-.|++.-
T Consensus       347 ~l~~l~l~~Np~~C  360 (498)
T KOG4237|consen  347 SLSTLNLLSNPFNC  360 (498)
T ss_pred             eeeeeehccCcccC
Confidence            78888888777643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.63  E-value=2.1e-15  Score=172.26  Aligned_cols=79  Identities=19%  Similarity=0.223  Sum_probs=58.9

Q ss_pred             CcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEcCC
Q 002284           89 QRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSN  168 (943)
Q Consensus        89 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~  168 (943)
                      ..-.+|+++.+.++.+|..+.  .+|+.|++++|+++.+|..   +++|++|++++|. +..+|..   .++|+.|++++
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~  271 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFS  271 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeeccC
Confidence            446688999998888888775  4788999999998888853   5788888888875 5556642   35778888888


Q ss_pred             CCCCccccc
Q 002284          169 TDSLEEMPL  177 (943)
Q Consensus       169 n~~~~~~p~  177 (943)
                      |. +..+|.
T Consensus       272 N~-L~~Lp~  279 (788)
T PRK15387        272 NP-LTHLPA  279 (788)
T ss_pred             Cc-hhhhhh
Confidence            87 555543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.62  E-value=2.5e-15  Score=171.57  Aligned_cols=97  Identities=25%  Similarity=0.265  Sum_probs=56.4

Q ss_pred             ccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccceeee
Q 002284          678 QALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVI  757 (943)
Q Consensus       678 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l  757 (943)
                      .+|+.|++++|. +..+|..   ..+|+.|++++|.+.+ +|..   .++|+.|++++|. +..+|..   ..+|+.|++
T Consensus       362 ~~L~~L~Ls~N~-L~~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~-LssIP~l---~~~L~~L~L  429 (788)
T PRK15387        362 SELYKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNR-LTSLPML---PSGLLSLSV  429 (788)
T ss_pred             cccceehhhccc-cccCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCc-CCCCCcc---hhhhhhhhh
Confidence            445555555543 3334432   2356666666665443 4432   3467777777773 4556642   235667777


Q ss_pred             ccccCCccCCCcCCCCCCCCceeecCCCCC
Q 002284          758 YGCKKLEALPEGMHNLSSLQYLTIGGVPSL  787 (943)
Q Consensus       758 ~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l  787 (943)
                      ++|+ ++.+|..+..+++|+.|++++|+.-
T Consensus       430 s~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        430 YRNQ-LTRLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             ccCc-ccccChHHhhccCCCeEECCCCCCC
Confidence            7766 4566777777777777777777644

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=1.9e-17  Score=144.90  Aligned_cols=109  Identities=28%  Similarity=0.379  Sum_probs=64.4

Q ss_pred             hccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCccc-ccccHHHhc
Q 002284           79 RSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCREL-KKKCADMGN  157 (943)
Q Consensus        79 ~~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~-~~~p~~~~~  157 (943)
                      ..+|+.+..+.+|++|++++|+|..+|.+++.+++||.|+++-|++..+|..|+.++.|++|||++|+.. ..+|..|..
T Consensus        46 ~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~  125 (264)
T KOG0617|consen   46 TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY  125 (264)
T ss_pred             eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhH
Confidence            4555666666666666666666666666666666666666666666556666666666666666655433 335555556


Q ss_pred             cccCceEEcCCCCCCcccccccccccccccc
Q 002284          158 LIKLHHLNNSNTDSLEEMPLGIGKLTCLLTL  188 (943)
Q Consensus       158 L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L  188 (943)
                      ++.|+.|++++|. ...+|.+++++++||.|
T Consensus       126 m~tlralyl~dnd-fe~lp~dvg~lt~lqil  155 (264)
T KOG0617|consen  126 MTTLRALYLGDND-FEILPPDVGKLTNLQIL  155 (264)
T ss_pred             HHHHHHHHhcCCC-cccCChhhhhhcceeEE
Confidence            6666666666665 55556555555555554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.54  E-value=1.1e-16  Score=140.17  Aligned_cols=106  Identities=29%  Similarity=0.381  Sum_probs=93.2

Q ss_pred             chhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccC
Q 002284           82 LPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKL  161 (943)
Q Consensus        82 ~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L  161 (943)
                      .+++|++.+.+.|-||+|.++.+|..|..+++|+.|++++|+|+++|.+|+.+++|++|+++-|+ +..+|.+|+.++.|
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~l  104 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPAL  104 (264)
T ss_pred             cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchh
Confidence            45677899999999999999999999999999999999999999999999999999999999985 88999999999999


Q ss_pred             ceEEcCCCCCCc-ccccccccccccccc
Q 002284          162 HHLNNSNTDSLE-EMPLGIGKLTCLLTL  188 (943)
Q Consensus       162 ~~L~l~~n~~~~-~~p~~~~~L~~L~~L  188 (943)
                      +.||+.+|.+.. .+|..|..|+.|+.|
T Consensus       105 evldltynnl~e~~lpgnff~m~tlral  132 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRAL  132 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHH
Confidence            999999998433 455556666666555

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.53  E-value=2e-14  Score=165.58  Aligned_cols=82  Identities=20%  Similarity=0.297  Sum_probs=66.1

Q ss_pred             CcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEcCC
Q 002284           89 QRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSN  168 (943)
Q Consensus        89 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~  168 (943)
                      .+...|+++++.++.+|..+.  ++|+.|+|++|+|+.+|..+.  .+|++|++++|. +..+|..+.  .+|+.|++++
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSI  250 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcC
Confidence            557889999999999988775  589999999999999987664  589999999986 567787664  4789999999


Q ss_pred             CCCCcccccc
Q 002284          169 TDSLEEMPLG  178 (943)
Q Consensus       169 n~~~~~~p~~  178 (943)
                      |. +..+|..
T Consensus       251 N~-L~~LP~~  259 (754)
T PRK15370        251 NR-ITELPER  259 (754)
T ss_pred             Cc-cCcCChh
Confidence            88 5566643

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.52  E-value=3.9e-14  Score=163.31  Aligned_cols=97  Identities=13%  Similarity=0.244  Sum_probs=77.2

Q ss_pred             ccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccc
Q 002284           80 SILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLI  159 (943)
Q Consensus        80 ~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~  159 (943)
                      .+|..+.  +.|+.|+|++|.++.+|..+.  .+|++|++++|+++.+|..+.  .+|+.|++++|. +..+|..+.  .
T Consensus       192 sLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s  262 (754)
T PRK15370        192 TIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR-ITELPERLP--S  262 (754)
T ss_pred             cCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc-cCcCChhHh--C
Confidence            4565553  579999999999999998765  589999999999999997664  489999999996 568888775  5


Q ss_pred             cCceEEcCCCCCCcccccccccccccccc
Q 002284          160 KLHHLNNSNTDSLEEMPLGIGKLTCLLTL  188 (943)
Q Consensus       160 ~L~~L~l~~n~~~~~~p~~~~~L~~L~~L  188 (943)
                      +|+.|++++|. +..+|..+.  .+|+.|
T Consensus       263 ~L~~L~Ls~N~-L~~LP~~l~--~sL~~L  288 (754)
T PRK15370        263 ALQSLDLFHNK-ISCLPENLP--EELRYL  288 (754)
T ss_pred             CCCEEECcCCc-cCccccccC--CCCcEE
Confidence            89999999998 667776543  244444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.38  E-value=6.8e-13  Score=155.55  Aligned_cols=132  Identities=26%  Similarity=0.270  Sum_probs=104.1

Q ss_pred             cccccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCcc--ccccCc-cccCCCCCceeecCCC-cccccch
Q 002284           54 DLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYL--ISEVPD-SIGDLSYLRYLNLSGT-QIRTLPE  129 (943)
Q Consensus        54 ~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~--i~~lp~-~~~~l~~L~~L~Ls~n-~i~~lp~  129 (943)
                      ...+....|...+..+.       ...++. -...+.|++|-+.+|.  +..++. .|..++.||+|||++| .+.++|+
T Consensus       518 ~~~~~~~~rr~s~~~~~-------~~~~~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~  589 (889)
T KOG4658|consen  518 QVKSWNSVRRMSLMNNK-------IEHIAG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS  589 (889)
T ss_pred             cccchhheeEEEEeccc-------hhhccC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence            34455677877776543       122222 2245589999999996  677754 4788999999999988 6889999


Q ss_pred             hhhhccccceeecCCCcccccccHHHhccccCceEEcCCCCCCccccccccccccccccCceEec
Q 002284          130 SVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVG  194 (943)
Q Consensus       130 ~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L~~~~~~  194 (943)
                      .|+.|.+||+|++++.. +..+|.++++|++|.+|++..+.....+|.....|++||+|..+...
T Consensus       590 ~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  590 SIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             HHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            99999999999999974 88999999999999999999988666666667779999999665554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.23  E-value=1.7e-12  Score=140.03  Aligned_cols=40  Identities=23%  Similarity=0.117  Sum_probs=22.3

Q ss_pred             cCccceeceEEEecCCCcC----ccchhccCCCCcCeeeccCCC
Q 002284          512 FGLSFRLEHLELINCQDLE----KLPKSLLSLSSLTEMRIHNCS  551 (943)
Q Consensus       512 ~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~L~~n~  551 (943)
                      +..+.+|+.|++++|....    .++..+...+.|++++++++.
T Consensus        19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~   62 (319)
T cd00116          19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE   62 (319)
T ss_pred             HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc
Confidence            4455556666666665422    234445555666666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.16  E-value=4.7e-12  Score=136.53  Aligned_cols=89  Identities=16%  Similarity=0.072  Sum_probs=52.2

Q ss_pred             chhhhccCcccEEEecCccccc-------cCccccCCCCCceeecCCCcccc-cchhhhhccc---cceeecCCCcccc-
Q 002284           82 LPRLLKLQRLRVFSLRGYLISE-------VPDSIGDLSYLRYLNLSGTQIRT-LPESVNKLYN---LHTLLLEGCRELK-  149 (943)
Q Consensus        82 ~~~~~~l~~L~~L~L~~n~i~~-------lp~~~~~l~~L~~L~Ls~n~i~~-lp~~i~~L~~---L~~L~L~~n~~~~-  149 (943)
                      +..+...+.++.|+++++.+..       ++..+..+++|++|++++|.+.. .+..+..+.+   |++|++++|.... 
T Consensus        44 ~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~  123 (319)
T cd00116          44 ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDR  123 (319)
T ss_pred             HHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchH
Confidence            3333456667777777665542       23455566677777777776653 3445555554   7777777765431 


Q ss_pred             ---cccHHHhcc-ccCceEEcCCCC
Q 002284          150 ---KKCADMGNL-IKLHHLNNSNTD  170 (943)
Q Consensus       150 ---~~p~~~~~L-~~L~~L~l~~n~  170 (943)
                         .+...+..+ ++|+.|++++|.
T Consensus       124 ~~~~l~~~l~~~~~~L~~L~L~~n~  148 (319)
T cd00116         124 GLRLLAKGLKDLPPALEKLVLGRNR  148 (319)
T ss_pred             HHHHHHHHHHhCCCCceEEEcCCCc
Confidence               223345555 677777777776

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.99  E-value=1.5e-11  Score=124.35  Aligned_cols=290  Identities=17%  Similarity=0.210  Sum_probs=153.6

Q ss_pred             CCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccC---cCCCCCCceEEeccCcCccccccccCcccccc
Q 002284          563 SQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAG---VQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRR  639 (943)
Q Consensus       563 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~  639 (943)
                      ..|+.|.+.+|...+.-+..-...++|+++.|.+.+|..++...-   ..+.+.|+.+++..|..+++....    ....
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk----~la~  213 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK----YLAE  213 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH----HHHH
Confidence            347778888887665544333345677777777777765543221   134455555555555554443211    0112


Q ss_pred             cCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccc-
Q 002284          640 HTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKML-  718 (943)
Q Consensus       640 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~-  718 (943)
                      .+++|++++++.|+.++.    +                              .+-....++..++.+.+.+|...+.- 
T Consensus       214 gC~kL~~lNlSwc~qi~~----~------------------------------gv~~~~rG~~~l~~~~~kGC~e~~le~  259 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISG----N------------------------------GVQALQRGCKELEKLSLKGCLELELEA  259 (483)
T ss_pred             hhhhHHHhhhccCchhhc----C------------------------------cchHHhccchhhhhhhhcccccccHHH
Confidence            344444444444443322    0                              12222344444444444444333210 


Q ss_pred             -cccccCCCCccEEeccCCCCCcccCc--CCccccccceeeeccccCCccCCC-cC-CCCCCCCceeecCCCCCccccCC
Q 002284          719 -PHGLHKLWHLQEIDIQDCENLVSFPE--GGLLSAKLKRLVIYGCKKLEALPE-GM-HNLSSLQYLTIGGVPSLLCFTED  793 (943)
Q Consensus       719 -p~~~~~l~~L~~L~l~~~~~l~~~p~--~~~~l~~L~~L~l~~~~~l~~~p~-~~-~~l~~L~~L~l~~~~~l~~~~~~  793 (943)
                       -..-....-+.++++.+|..++...-  ....+..|+.|+.++|...+..+- .+ .+.++|+.|.+++|..++...-.
T Consensus       260 l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft  339 (483)
T KOG4341|consen  260 LLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT  339 (483)
T ss_pred             HHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh
Confidence             01112344455556666644443321  122355667777777665443321 11 45567777777777764433211


Q ss_pred             --CCCCCCcceEEecCCcchhccccccCCCCCCCccEEEecCCCCcCcccCccccccc---CCCCCCccEEEeecCCCCc
Q 002284          794 --GLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLG---TTLPACLTQLEIFNFPNLE  868 (943)
Q Consensus       794 --~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~  868 (943)
                        ....+.|+.+++.+|....+....+...+++.|++|.+++|    +.+.++++...   ......|+.+.+.+||.++
T Consensus       340 ~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshc----e~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~  415 (483)
T KOG4341|consen  340 MLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHC----ELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT  415 (483)
T ss_pred             hhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhh----hhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence              12236777888888877766544445667888888888887    45555543221   1345667777777777765


Q ss_pred             ccc--cccCCCCCCeEeecCCCCCccCC
Q 002284          869 RLS--SSICDQNLTSLKLTNCPKLKYFP  894 (943)
Q Consensus       869 ~l~--~~~~~~~L~~L~l~~C~~L~~~~  894 (943)
                      .--  ....+++|+.+++.+|.....-+
T Consensus       416 d~~Le~l~~c~~Leri~l~~~q~vtk~~  443 (483)
T KOG4341|consen  416 DATLEHLSICRNLERIELIDCQDVTKEA  443 (483)
T ss_pred             HHHHHHHhhCcccceeeeechhhhhhhh
Confidence            432  11256777777777776665543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.98  E-value=1.7e-11  Score=124.02  Aligned_cols=178  Identities=17%  Similarity=0.182  Sum_probs=89.8

Q ss_pred             ccEEEeecCCCch--hhHhhhcccccccEEEeeccCCccccc--ccccCCCCccEEeccCCCCCcccCcC--Cccccccc
Q 002284          680 LKFLSIWHCSKLE--SIVERLDNKISLEVIEIVSCENLKMLP--HGLHKLWHLQEIDIQDCENLVSFPEG--GLLSAKLK  753 (943)
Q Consensus       680 L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~l~~~~~l~~~p~~--~~~l~~L~  753 (943)
                      +.++++.+|..++  .++..-.++.+|++|+.++|...+..+  .--.+.++|+.|.++.|+..+..-..  ..+++.|+
T Consensus       270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le  349 (483)
T KOG4341|consen  270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLE  349 (483)
T ss_pred             hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhh
Confidence            3444444554443  223334455556666666655543322  11134556666666666544332211  22355666


Q ss_pred             eeeeccccCCccC--CCcCCCCCCCCceeecCCCCCccc-----cCCCCCCCCcceEEecCCcchhccccccCCCCCCCc
Q 002284          754 RLVIYGCKKLEAL--PEGMHNLSSLQYLTIGGVPSLLCF-----TEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSL  826 (943)
Q Consensus       754 ~L~l~~~~~l~~~--p~~~~~l~~L~~L~l~~~~~l~~~-----~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L  826 (943)
                      .+++.+|......  -.--.+++.|+.|.++.|..+++-     .........|..+.+++|+.+.+... ..+..+++|
T Consensus       350 ~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-e~l~~c~~L  428 (483)
T KOG4341|consen  350 RLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL-EHLSICRNL  428 (483)
T ss_pred             hhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH-HHHhhCccc
Confidence            6666665532211  111145666666666666655433     22223346677777777777665432 245667777


Q ss_pred             cEEEecCCCCcCcccCcccccccCCCCCCccEEEee
Q 002284          827 RRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIF  862 (943)
Q Consensus       827 ~~L~l~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~  862 (943)
                      |.+++-+|    ..+..+.+......+|+++...+.
T Consensus       429 eri~l~~~----q~vtk~~i~~~~~~lp~i~v~a~~  460 (483)
T KOG4341|consen  429 ERIELIDC----QDVTKEAISRFATHLPNIKVHAYF  460 (483)
T ss_pred             ceeeeech----hhhhhhhhHHHHhhCccceehhhc
Confidence            77777776    333444433333455555554443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.88  E-value=1.6e-09  Score=101.29  Aligned_cols=131  Identities=24%  Similarity=0.250  Sum_probs=55.2

Q ss_pred             cccccccccEEeecccCCCCCCcchhccchhhh-ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhh-
Q 002284           54 DLYDIQHLRTLLPVTLLSSRPGYLARSILPRLL-KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESV-  131 (943)
Q Consensus        54 ~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i-  131 (943)
                      .+.+..++|.|.+.++      .+ .. ...+. .+.+|++|||++|.|+.++ .+..+++|++|++++|+|+.+++.+ 
T Consensus        14 ~~~n~~~~~~L~L~~n------~I-~~-Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~   84 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGN------QI-ST-IENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLD   84 (175)
T ss_dssp             ------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHH
T ss_pred             cccccccccccccccc------cc-cc-ccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchH
Confidence            3445567788866544      22 22 24555 6889999999999999985 5888999999999999999997666 


Q ss_pred             hhccccceeecCCCcccccc-cHHHhccccCceEEcCCCCCCccccc----cccccccccccCceEec
Q 002284          132 NKLYNLHTLLLEGCRELKKK-CADMGNLIKLHHLNNSNTDSLEEMPL----GIGKLTCLLTLCNFVVG  194 (943)
Q Consensus       132 ~~L~~L~~L~L~~n~~~~~~-p~~~~~L~~L~~L~l~~n~~~~~~p~----~~~~L~~L~~L~~~~~~  194 (943)
                      ..+++|++|++++|.+...- -..++.+++|++|++.+|. +...+.    -+..+++|+.|+...+.
T Consensus        85 ~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~  151 (175)
T PF14580_consen   85 KNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVT  151 (175)
T ss_dssp             HH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred             HhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEcc
Confidence            47899999999999743211 1457889999999999998 554443    37788999988765554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.79  E-value=3.2e-10  Score=119.21  Aligned_cols=99  Identities=30%  Similarity=0.315  Sum_probs=55.4

Q ss_pred             ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284           87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN  166 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l  166 (943)
                      .+.--...||+.|++..+|..++.+..|+.|.|..|.|..||+.+++|..|.+|||+.|. +..+|..+..|+ |+.|-+
T Consensus        73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~  150 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIV  150 (722)
T ss_pred             cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEE
Confidence            344444555555555555555555555555666666555555555666666666665553 455555555543 555555


Q ss_pred             CCCCCCcccccccccccccccc
Q 002284          167 SNTDSLEEMPLGIGKLTCLLTL  188 (943)
Q Consensus       167 ~~n~~~~~~p~~~~~L~~L~~L  188 (943)
                      ++|+ ++.+|.+++.+..|..|
T Consensus       151 sNNk-l~~lp~~ig~~~tl~~l  171 (722)
T KOG0532|consen  151 SNNK-LTSLPEEIGLLPTLAHL  171 (722)
T ss_pred             ecCc-cccCCcccccchhHHHh
Confidence            5555 55555555554555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.79  E-value=5.1e-09  Score=116.14  Aligned_cols=103  Identities=32%  Similarity=0.434  Sum_probs=82.7

Q ss_pred             hhhccCcccEEEecCccccccCccccCCC-CCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCc
Q 002284           84 RLLKLQRLRVFSLRGYLISEVPDSIGDLS-YLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLH  162 (943)
Q Consensus        84 ~~~~l~~L~~L~L~~n~i~~lp~~~~~l~-~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~  162 (943)
                      .+..++.++.|++.+|.+..+|.....+. +|++|++++|.+..+|..++.+++|+.|++++|. +..+|...+.+++|+
T Consensus       111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~  189 (394)
T COG4886         111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN  189 (394)
T ss_pred             hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhh
Confidence            33466788888888888888887777775 8888888888888888888888888888888885 677777777888888


Q ss_pred             eEEcCCCCCCcccccccccccccccc
Q 002284          163 HLNNSNTDSLEEMPLGIGKLTCLLTL  188 (943)
Q Consensus       163 ~L~l~~n~~~~~~p~~~~~L~~L~~L  188 (943)
                      .|++++|. +..+|..++.+..|++|
T Consensus       190 ~L~ls~N~-i~~l~~~~~~~~~L~~l  214 (394)
T COG4886         190 NLDLSGNK-ISDLPPEIELLSALEEL  214 (394)
T ss_pred             heeccCCc-cccCchhhhhhhhhhhh
Confidence            88888888 77887766666666666

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=1.6e-09  Score=110.55  Aligned_cols=131  Identities=21%  Similarity=0.196  Sum_probs=79.7

Q ss_pred             cccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCccc--CCCCCCC
Q 002284          486 DIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSF--PEAVLPS  563 (943)
Q Consensus       486 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~--~~~~~~~  563 (943)
                      .+++|+.|.++.|. ++  |....+....+|+|+.|++..|.....-......+..|++|+|++|+.+..-  +..+.++
T Consensus       195 ~l~~lK~L~l~~CG-ls--~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~  271 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCG-LS--WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP  271 (505)
T ss_pred             hhhhhheEEeccCC-CC--HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccccc
Confidence            56778888888885 44  3333344677888888888888543333334445677888888888755432  2334478


Q ss_pred             CccEEEEecCCCCCc-Ccccc---ccCCCCCccEEEeecCCC--cccccCcCCCCCCceEEe
Q 002284          564 QLRVISIWDSGALKF-LPEAW---MLDNNSSLEILDIRHCHL--LTYIAGVQLPPSLKQLEI  619 (943)
Q Consensus       564 ~L~~L~l~~~~~l~~-~~~~~---~~~~l~~L~~L~l~~n~~--~~~~~~~~~~~~L~~L~l  619 (943)
                      .|..|+++.|.+... .|+.-   ....+++|++|++..|++  ..++......++|+.|.+
T Consensus       272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~  333 (505)
T KOG3207|consen  272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI  333 (505)
T ss_pred             chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence            888888888774332 12110   013578888888888875  223333334455555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.73  E-value=8.8e-09  Score=96.40  Aligned_cols=81  Identities=35%  Similarity=0.441  Sum_probs=29.7

Q ss_pred             ccCcccEEEecCccccccCcccc-CCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHH-hccccCceE
Q 002284           87 KLQRLRVFSLRGYLISEVPDSIG-DLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADM-GNLIKLHHL  164 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~lp~~~~-~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~-~~L~~L~~L  164 (943)
                      +..++|.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++|. +..+++.+ ..+++|++|
T Consensus        17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred             ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEE
Confidence            6678899999999999884 565 6899999999999999994 68899999999999997 55665555 469999999


Q ss_pred             EcCCCC
Q 002284          165 NNSNTD  170 (943)
Q Consensus       165 ~l~~n~  170 (943)
                      ++++|+
T Consensus        94 ~L~~N~   99 (175)
T PF14580_consen   94 YLSNNK   99 (175)
T ss_dssp             E-TTS-
T ss_pred             ECcCCc
Confidence            999998

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.71  E-value=6.1e-10  Score=117.13  Aligned_cols=109  Identities=27%  Similarity=0.422  Sum_probs=98.8

Q ss_pred             hhccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhc
Q 002284           78 ARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGN  157 (943)
Q Consensus        78 ~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~  157 (943)
                      ..++|.++..+..|..+.|.+|.+..+|.+++++..|.||||+.|++..+|..++.|+ |++|-+++|. ++.+|..++.
T Consensus        87 ~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~  164 (722)
T KOG0532|consen   87 FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGL  164 (722)
T ss_pred             cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccCCccccc
Confidence            3577888888999999999999999999999999999999999999999999888876 8999999985 8899999999


Q ss_pred             cccCceEEcCCCCCCccccccccccccccccC
Q 002284          158 LIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLC  189 (943)
Q Consensus       158 L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L~  189 (943)
                      +..|.+||.+.|. +..+|..++.+.+|+.|.
T Consensus       165 ~~tl~~ld~s~ne-i~slpsql~~l~slr~l~  195 (722)
T KOG0532|consen  165 LPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLN  195 (722)
T ss_pred             chhHHHhhhhhhh-hhhchHHhhhHHHHHHHH
Confidence            9999999999999 889999999999988883

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.70  E-value=1.7e-08  Score=77.32  Aligned_cols=58  Identities=29%  Similarity=0.495  Sum_probs=43.7

Q ss_pred             CcccEEEecCccccccC-ccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCc
Q 002284           89 QRLRVFSLRGYLISEVP-DSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCR  146 (943)
Q Consensus        89 ~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~  146 (943)
                      ++|++|++++|+++.+| ..|.++++|++|++++|.|+.+| .+|.++++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            46777888888777775 46677888888888888877774 567777788888777774

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.64  E-value=5.8e-09  Score=100.84  Aligned_cols=81  Identities=28%  Similarity=0.305  Sum_probs=47.4

Q ss_pred             cCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEcC
Q 002284           88 LQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNS  167 (943)
Q Consensus        88 l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~  167 (943)
                      .+.|+.+|||+|.|+.+.+++.-++.+|.|++|+|.|..+- .+..|++|+.|||++|. +..+-..=.+|.+.+.|.++
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccch-hHhhhhhHhhhcCEeeeehh
Confidence            44566666666666666666666666666666666666652 35666666666666653 33333334455556666666


Q ss_pred             CCC
Q 002284          168 NTD  170 (943)
Q Consensus       168 ~n~  170 (943)
                      .|.
T Consensus       361 ~N~  363 (490)
T KOG1259|consen  361 QNK  363 (490)
T ss_pred             hhh
Confidence            554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=1.3e-08  Score=104.19  Aligned_cols=216  Identities=21%  Similarity=0.179  Sum_probs=123.4

Q ss_pred             cCCCCCceeecCCCcccccc--hhhhhccccceeecCCCccccccc--HHHhccccCceEEcCCCCCCcccccccccccc
Q 002284          109 GDLSYLRYLNLSGTQIRTLP--ESVNKLYNLHTLLLEGCRELKKKC--ADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTC  184 (943)
Q Consensus       109 ~~l~~L~~L~Ls~n~i~~lp--~~i~~L~~L~~L~L~~n~~~~~~p--~~~~~L~~L~~L~l~~n~~~~~~p~~~~~L~~  184 (943)
                      +++++||...|.++.+...+  +....+++++.|||++|-+...-|  .-...|++|+.|+++.|. +...-.   ... 
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~---s~~-  192 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFIS---SNT-  192 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCcc---ccc-
Confidence            56778888888888877766  356778888888888874332222  335678888888888887 211100   000 


Q ss_pred             ccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEeecCCCCCCchhhhhHHhh
Q 002284          185 LLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGV  264 (943)
Q Consensus       185 L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~  264 (943)
                                                                      -..+++|+.|.++.++++          ...+
T Consensus       193 ------------------------------------------------~~~l~~lK~L~l~~CGls----------~k~V  214 (505)
T KOG3207|consen  193 ------------------------------------------------TLLLSHLKQLVLNSCGLS----------WKDV  214 (505)
T ss_pred             ------------------------------------------------hhhhhhhheEEeccCCCC----------HHHH
Confidence                                                            002345566666655552          2233


Q ss_pred             hccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCC--CCCCCCCCCCeeEEecCcCceeeCccccC
Q 002284          265 LDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSM--PSVGQLPSLKHLEVRGMSRVKRLGSEFYG  342 (943)
Q Consensus       265 l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~~~~~~~  342 (943)
                      ...+..+|+|+.|++.+|.+. +-.......+..|+.|+|++|.+....  +..+.+|.|+.|+++.+..-..-..+...
T Consensus       215 ~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s  293 (505)
T KOG3207|consen  215 QWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVES  293 (505)
T ss_pred             HHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccc
Confidence            344455667777777766311 111111123677888999988875543  46788888888888887633322222111


Q ss_pred             CCCCCCCCCcceeecccccccccccccccCCccccCCcccEEeeccCCCcc
Q 002284          343 NDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQ  393 (943)
Q Consensus       343 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  393 (943)
                      ......|++|+.|.+..|+. .+|-.   -..+..+++|+.|.+.. +.++
T Consensus       294 ~~kt~~f~kL~~L~i~~N~I-~~w~s---l~~l~~l~nlk~l~~~~-n~ln  339 (505)
T KOG3207|consen  294 LDKTHTFPKLEYLNISENNI-RDWRS---LNHLRTLENLKHLRITL-NYLN  339 (505)
T ss_pred             hhhhcccccceeeecccCcc-ccccc---cchhhccchhhhhhccc-cccc
Confidence            11134477777777777742 22221   12334456666666554 4553

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.62  E-value=1.6e-07  Score=98.70  Aligned_cols=21  Identities=29%  Similarity=0.558  Sum_probs=11.3

Q ss_pred             CCcccccEEEeecCCCchhhH
Q 002284          675 NLPQALKFLSIWHCSKLESIV  695 (943)
Q Consensus       675 ~lp~~L~~L~l~~~~~l~~~~  695 (943)
                      .+|.+|++|.+++|..++.+|
T Consensus        69 ~LP~sLtsL~Lsnc~nLtsLP   89 (426)
T PRK15386         69 VLPNELTEITIENCNNLTTLP   89 (426)
T ss_pred             CCCCCCcEEEccCCCCcccCC
Confidence            345556666665555554443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.61  E-value=2.6e-07  Score=97.12  Aligned_cols=61  Identities=20%  Similarity=0.325  Sum_probs=28.5

Q ss_pred             CCCCccEEEeecCCCCcccccccCCCCCCeEeecCCCCC-ccCCCCCCCCccceEeecCCchHHH
Q 002284          852 LPACLTQLEIFNFPNLERLSSSICDQNLTSLKLTNCPKL-KYFPEKGLPASLLRLEIKKCPLIEK  915 (943)
Q Consensus       852 ~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~C~~L-~~~~~~~l~~sL~~L~i~~C~~l~~  915 (943)
                      +|++|++|.+.+|..+. +|.. -..+|++|.+..+... -.++...+|+++ .|++.+|-++..
T Consensus       154 LPsSLk~L~Is~c~~i~-LP~~-LP~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~  215 (426)
T PRK15386        154 ISPSLKTLSLTGCSNII-LPEK-LPESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSP  215 (426)
T ss_pred             cCCcccEEEecCCCccc-Cccc-ccccCcEEEecccccccccCccccccccc-EechhhhcccCH
Confidence            45555555555555332 2221 1245666655543211 112333456666 666666655443

>PLN03150 hypothetical protein; Provisional

Probab=98.58  E-value=8.6e-08  Score=111.07  Aligned_cols=99  Identities=23%  Similarity=0.287  Sum_probs=86.0

Q ss_pred             cccEEEecCcccc-ccCccccCCCCCceeecCCCccc-ccchhhhhccccceeecCCCcccccccHHHhccccCceEEcC
Q 002284           90 RLRVFSLRGYLIS-EVPDSIGDLSYLRYLNLSGTQIR-TLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNS  167 (943)
Q Consensus        90 ~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~  167 (943)
                      .++.|+|++|.+. .+|..|+.+++|++|+|++|.+. .+|..++.+++|++|+|++|.+.+.+|..++++++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            4788999999976 56889999999999999999997 678899999999999999998888999999999999999999


Q ss_pred             CCCCCcccccccccc-cccccc
Q 002284          168 NTDSLEEMPLGIGKL-TCLLTL  188 (943)
Q Consensus       168 ~n~~~~~~p~~~~~L-~~L~~L  188 (943)
                      +|.+.+.+|..++.+ .++..+
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l  520 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASF  520 (623)
T ss_pred             CCcccccCChHHhhccccCceE
Confidence            999888999887653 234444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.55  E-value=5.1e-08  Score=74.63  Aligned_cols=59  Identities=31%  Similarity=0.354  Sum_probs=52.9

Q ss_pred             CCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHhccccCceEEcCCCC
Q 002284          112 SYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTD  170 (943)
Q Consensus       112 ~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~  170 (943)
                      ++|++|++++|+|+.+| ..|.++++|++|++++|.+....|..|.++++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            47999999999999997 588999999999999998655555679999999999999997

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.54  E-value=6.4e-08  Score=107.39  Aligned_cols=123  Identities=25%  Similarity=0.337  Sum_probs=102.5

Q ss_pred             ccccccEEeecccCCCCCCcchhccchhhhccC-cccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhcc
Q 002284           57 DIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQ-RLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLY  135 (943)
Q Consensus        57 ~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~-~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~  135 (943)
                      ..+.+..|.+..+.       ...+++....++ +|+.|++++|.+..+|..++.+++|+.|++++|++.++|...+.+.
T Consensus       114 ~~~~l~~L~l~~n~-------i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~  186 (394)
T COG4886         114 ELTNLTSLDLDNNN-------ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLS  186 (394)
T ss_pred             cccceeEEecCCcc-------cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhh
Confidence            44567777654432       567777777775 9999999999999999899999999999999999999998888999


Q ss_pred             ccceeecCCCcccccccHHHhccccCceEEcCCCCCCcccccccccccccccc
Q 002284          136 NLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTL  188 (943)
Q Consensus       136 ~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L  188 (943)
                      +|+.|++++|. +..+|..++.+..|++|++++|. ....+..++++.++..+
T Consensus       187 ~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l  237 (394)
T COG4886         187 NLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGL  237 (394)
T ss_pred             hhhheeccCCc-cccCchhhhhhhhhhhhhhcCCc-ceecchhhhhccccccc
Confidence            99999999985 88899888888899999999997 55566666666666655

>PLN03150 hypothetical protein; Provisional

Probab=98.47  E-value=1.8e-07  Score=108.34  Aligned_cols=109  Identities=15%  Similarity=0.075  Sum_probs=70.8

Q ss_pred             ccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeecc
Q 002284          680 LKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYG  759 (943)
Q Consensus       680 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~  759 (943)
                      ++.|+++++...+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|+|++|...+.+|..+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            55666666666566666666677777777777766666666666677777777777766666666666666777777777


Q ss_pred             ccCCccCCCcCCCC-CCCCceeecCCCCCc
Q 002284          760 CKKLEALPEGMHNL-SSLQYLTIGGVPSLL  788 (943)
Q Consensus       760 ~~~l~~~p~~~~~l-~~L~~L~l~~~~~l~  788 (943)
                      |...+.+|..+... .++..+++.+|+.+.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCcccc
Confidence            66666666655432 345556666655443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.43  E-value=5.3e-08  Score=94.34  Aligned_cols=122  Identities=28%  Similarity=0.307  Sum_probs=98.7

Q ss_pred             cccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhcccc
Q 002284           58 IQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNL  137 (943)
Q Consensus        58 ~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L  137 (943)
                      ++-|.++.+      ++|. ...+-.++--.+.+|+|++|+|.|..+.. +..|.+|+.||||+|.++++-..-.+|-+.
T Consensus       283 Wq~LtelDL------S~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  283 WQELTELDL------SGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNI  354 (490)
T ss_pred             Hhhhhhccc------cccc-hhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCE
Confidence            445555543      4444 34555666678999999999999988854 899999999999999999997677899999


Q ss_pred             ceeecCCCcccccccHHHhccccCceEEcCCCCCCcccc--ccccccccccccCc
Q 002284          138 HTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMP--LGIGKLTCLLTLCN  190 (943)
Q Consensus       138 ~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~~p--~~~~~L~~L~~L~~  190 (943)
                      ++|.|++|. ++.+ +++++|.+|..||+++|+ +..+.  .+||+|+.|+++..
T Consensus       355 KtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L  406 (490)
T KOG1259|consen  355 KTLKLAQNK-IETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRL  406 (490)
T ss_pred             eeeehhhhh-Hhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhh
Confidence            999999984 6655 579999999999999999 77665  35999999998844

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=1.9e-08  Score=97.36  Aligned_cols=157  Identities=15%  Similarity=0.133  Sum_probs=112.6

Q ss_pred             ccccEEEeecCCCch-hhHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcC--Cccccccce
Q 002284          678 QALKFLSIWHCSKLE-SIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEG--GLLSAKLKR  754 (943)
Q Consensus       678 ~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~--~~~l~~L~~  754 (943)
                      +.++.||+++-.... .+...+..|.+|+.|.+.+++.-..+...+.+=..|+.|+|+.|..++.....  +.+++.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            458888888865544 34445788899999999999888888788888889999999999887765443  456889999


Q ss_pred             eeeccccCCccCCCc-CC-CCCCCCceeecCCCCCcccc---CCCCCCCCcceEEecCCcchhccccccCCCCCCCccEE
Q 002284          755 LVIYGCKKLEALPEG-MH-NLSSLQYLTIGGVPSLLCFT---EDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRL  829 (943)
Q Consensus       755 L~l~~~~~l~~~p~~-~~-~l~~L~~L~l~~~~~l~~~~---~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L  829 (943)
                      |++++|......-.. +. --++|..|+++||...-...   .-....++|.+||+++|..++... ...+-+++.|++|
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~-~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC-FQEFFKFNYLQHL  343 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH-HHHHHhcchheee
Confidence            999999876554221 12 23578888898877432111   112246888888888888777633 2346678888888


Q ss_pred             EecCCC
Q 002284          830 AISGCD  835 (943)
Q Consensus       830 ~l~~c~  835 (943)
                      .++.|.
T Consensus       344 SlsRCY  349 (419)
T KOG2120|consen  344 SLSRCY  349 (419)
T ss_pred             ehhhhc
Confidence            888873

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=4.1e-08  Score=95.16  Aligned_cols=89  Identities=24%  Similarity=0.257  Sum_probs=44.6

Q ss_pred             cCCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccC-CCCCCcceEEEEeeCCCCCCcccC--CCCcCCeeEEEEeCCCC
Q 002284          233 LDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDML-KPHRSLEQFCISGFGGKKFPTWLG--YSLFSNLVTLKFQDCSM  309 (943)
Q Consensus       233 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l-~~~~~L~~L~l~~~~~~~~p~~~~--~~~l~~L~~L~L~~n~~  309 (943)
                      +..++.|+.|+++|+..+.         + .+-... .--++|+.|.++|+.-.-.-..+.  ...+++|.+|||++|..
T Consensus       256 ~~scs~L~~LNlsWc~l~~---------~-~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~  325 (419)
T KOG2120|consen  256 LSSCSRLDELNLSWCFLFT---------E-KVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM  325 (419)
T ss_pred             HHhhhhHhhcCchHhhccc---------h-hhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc
Confidence            6778888899999988641         0 010011 112466677777654221111110  02256666666666543


Q ss_pred             CCC-CC-CCCCCCCCCeeEEecCc
Q 002284          310 CTS-MP-SVGQLPSLKHLEVRGMS  331 (943)
Q Consensus       310 ~~~-~~-~~~~l~~L~~L~L~~~~  331 (943)
                      ... .. .+..++.|++|.++.|.
T Consensus       326 l~~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  326 LKNDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             cCchHHHHHHhcchheeeehhhhc
Confidence            221 11 44555555555555554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.25  E-value=9.2e-07  Score=61.44  Aligned_cols=40  Identities=28%  Similarity=0.482  Sum_probs=25.9

Q ss_pred             CcccEEEecCccccccCccccCCCCCceeecCCCcccccc
Q 002284           89 QRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLP  128 (943)
Q Consensus        89 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp  128 (943)
                      ++|++|++++|+|+.+|..+++|++|++|++++|+|+++|
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            3567777777777777666677777777777777766653

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.21  E-value=2.3e-07  Score=102.85  Aligned_cols=104  Identities=27%  Similarity=0.344  Sum_probs=70.7

Q ss_pred             cchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhcccc
Q 002284           81 ILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIK  160 (943)
Q Consensus        81 ~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~  160 (943)
                      +...+..++.|..|++.+|.|..+...+..+.+|++|++++|.|+.+ ..+..+..|+.|++++|. +..+ ..+..+++
T Consensus        87 ~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~-i~~~-~~~~~l~~  163 (414)
T KOG0531|consen   87 ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNL-ISDI-SGLESLKS  163 (414)
T ss_pred             hhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCc-chhc-cCCccchh
Confidence            33445577888888888888877765577788888888888888877 456677778888888875 3333 34566778


Q ss_pred             CceEEcCCCCCCcccccc-cccccccccc
Q 002284          161 LHHLNNSNTDSLEEMPLG-IGKLTCLLTL  188 (943)
Q Consensus       161 L~~L~l~~n~~~~~~p~~-~~~L~~L~~L  188 (943)
                      |+.+++++|. +..+... ...+.+++.+
T Consensus       164 L~~l~l~~n~-i~~ie~~~~~~~~~l~~l  191 (414)
T KOG0531|consen  164 LKLLDLSYNR-IVDIENDELSELISLEEL  191 (414)
T ss_pred             hhcccCCcch-hhhhhhhhhhhccchHHH
Confidence            8888888887 4444432 3445555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.19  E-value=1.8e-07  Score=93.23  Aligned_cols=256  Identities=19%  Similarity=0.223  Sum_probs=132.1

Q ss_pred             chhhhccCcccEEEecCccccc-----cCccccCCCCCceeecCCCc----ccccchhh-------hhccccceeecCCC
Q 002284           82 LPRLLKLQRLRVFSLRGYLISE-----VPDSIGDLSYLRYLNLSGTQ----IRTLPESV-------NKLYNLHTLLLEGC  145 (943)
Q Consensus        82 ~~~~~~l~~L~~L~L~~n~i~~-----lp~~~~~l~~L~~L~Ls~n~----i~~lp~~i-------~~L~~L~~L~L~~n  145 (943)
                      .+..-.+..++.++|++|.++.     +-..+.+.++||.-++++-.    ..++|+.+       -..++|++||||+|
T Consensus        23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            3334478899999999998763     44556777888888888652    22455443       34458888888888


Q ss_pred             cccccccHH----HhccccCceEEcCCCCCCcccccc-ccccccccccCceEeccCCCCCcccccCcccccCceeecccc
Q 002284          146 RELKKKCAD----MGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLE  220 (943)
Q Consensus       146 ~~~~~~p~~----~~~L~~L~~L~l~~n~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~  220 (943)
                      -+-..-+..    +...+.|++|+|.+|. ++..... +++  .|.+|.                               
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~--al~~l~-------------------------------  148 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGR--ALFELA-------------------------------  148 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHH--HHHHHH-------------------------------
Confidence            643333332    5567888888888887 4433221 221  122220                               


Q ss_pred             cccCccchhhcccCCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCccc---CCCCcC
Q 002284          221 NVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWL---GYSLFS  297 (943)
Q Consensus       221 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~---~~~~l~  297 (943)
                              ........++|+++....|++.+..       ....-..++.++.|+.+.+..+.+..--...   ....++
T Consensus       149 --------~~kk~~~~~~Lrv~i~~rNrlen~g-------a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~  213 (382)
T KOG1909|consen  149 --------VNKKAASKPKLRVFICGRNRLENGG-------ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP  213 (382)
T ss_pred             --------HHhccCCCcceEEEEeecccccccc-------HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC
Confidence                    0011334566777777766663211       1122234445566666666655432111000   012366


Q ss_pred             CeeEEEEeCCCCCCC----CC-CCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccC
Q 002284          298 NLVTLKFQDCSMCTS----MP-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCS  372 (943)
Q Consensus       298 ~L~~L~L~~n~~~~~----~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  372 (943)
                      +|+.|+|++|.++..    +. .+..+++|+.|++++|..-..-...+.. .....+|+|+.|.+.+|..-.+-. ..+.
T Consensus       214 ~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~-al~~~~p~L~vl~l~gNeIt~da~-~~la  291 (382)
T KOG1909|consen  214 HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD-ALKESAPSLEVLELAGNEITRDAA-LALA  291 (382)
T ss_pred             cceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH-HHhccCCCCceeccCcchhHHHHH-HHHH
Confidence            777777777766421    11 4555667777777776421111111100 001115666666666653211100 0011


Q ss_pred             CccccCCcccEEeecc
Q 002284          373 QEIEGFPKLRELHIVR  388 (943)
Q Consensus       373 ~~~~~~~~L~~L~l~~  388 (943)
                      ......|.|+.|+|++
T Consensus       292 ~~~~ek~dL~kLnLng  307 (382)
T KOG1909|consen  292 ACMAEKPDLEKLNLNG  307 (382)
T ss_pred             HHHhcchhhHHhcCCc
Confidence            1223356666666666

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.08  E-value=5.4e-07  Score=99.93  Aligned_cols=100  Identities=26%  Similarity=0.361  Sum_probs=78.7

Q ss_pred             hccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEE
Q 002284           86 LKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLN  165 (943)
Q Consensus        86 ~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~  165 (943)
                      ..+..++.+.+..|.+..+-..++.+++|++|++.+|.|..+...+..+++|++|++++|. ++.+ .++..++.|+.|+
T Consensus        69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i-~~l~~l~~L~~L~  146 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKL-EGLSTLTLLKELN  146 (414)
T ss_pred             HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccc-cchhhccchhhhe
Confidence            3567777788999998886566899999999999999999996558999999999999986 4444 3578888899999


Q ss_pred             cCCCCCCccccccccccccccccC
Q 002284          166 NSNTDSLEEMPLGIGKLTCLLTLC  189 (943)
Q Consensus       166 l~~n~~~~~~p~~~~~L~~L~~L~  189 (943)
                      +.+|. +..+. ++..+++|+.++
T Consensus       147 l~~N~-i~~~~-~~~~l~~L~~l~  168 (414)
T KOG0531|consen  147 LSGNL-ISDIS-GLESLKSLKLLD  168 (414)
T ss_pred             eccCc-chhcc-CCccchhhhccc
Confidence            99998 55543 344455665553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.03  E-value=4.4e-07  Score=90.58  Aligned_cols=108  Identities=19%  Similarity=0.237  Sum_probs=68.9

Q ss_pred             cccccccEEeecccCCCCCCcchhccc----hhhhccCcccEEEecCccc----cccC-------ccccCCCCCceeecC
Q 002284           56 YDIQHLRTLLPVTLLSSRPGYLARSIL----PRLLKLQRLRVFSLRGYLI----SEVP-------DSIGDLSYLRYLNLS  120 (943)
Q Consensus        56 ~~~~~Lr~L~~~~~~~l~~~~~~~~~~----~~~~~l~~L~~L~L~~n~i----~~lp-------~~~~~l~~L~~L~Ls  120 (943)
                      ..+..+..+.+      ++|.+...-.    +.+.+-+.||.-+++.-..    ..+|       ..+-..++|++||||
T Consensus        27 ~~~~s~~~l~l------sgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS  100 (382)
T KOG1909|consen   27 EPMDSLTKLDL------SGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS  100 (382)
T ss_pred             cccCceEEEec------cCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence            34556666654      4455544332    3333778999999987542    2344       345566799999999


Q ss_pred             CCccc--cc---chhhhhccccceeecCCCcccccccHH-H-------------hccccCceEEcCCCC
Q 002284          121 GTQIR--TL---PESVNKLYNLHTLLLEGCRELKKKCAD-M-------------GNLIKLHHLNNSNTD  170 (943)
Q Consensus       121 ~n~i~--~l---p~~i~~L~~L~~L~L~~n~~~~~~p~~-~-------------~~L~~L~~L~l~~n~  170 (943)
                      +|-+.  .+   -+-+.+.+.|++|.|.+|. ++..... +             +.-++||++..++|+
T Consensus       101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen  101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             ccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence            99765  23   2456789999999999996 4433222 2             234567777776666

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.96  E-value=7.2e-06  Score=56.99  Aligned_cols=35  Identities=40%  Similarity=0.472  Sum_probs=27.8

Q ss_pred             CCCceeecCCCcccccchhhhhccccceeecCCCc
Q 002284          112 SYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCR  146 (943)
Q Consensus       112 ~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~  146 (943)
                      ++||+|++++|+|+.+|..+++|++|++|++++|.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence            47888888888888888778888888888888886

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.90  E-value=3.1e-06  Score=72.65  Aligned_cols=92  Identities=24%  Similarity=0.279  Sum_probs=78.0

Q ss_pred             hhccCcccEEEecCccccccCcccc-CCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCce
Q 002284           85 LLKLQRLRVFSLRGYLISEVPDSIG-DLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHH  163 (943)
Q Consensus        85 ~~~l~~L~~L~L~~n~i~~lp~~~~-~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~  163 (943)
                      +....+|+..+|++|.+..+|..|. ..+-.+.|++++|.|.++|.++..++.|+.|+++.|. +...|..|..|.+|-.
T Consensus        49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~  127 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDM  127 (177)
T ss_pred             HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHH
Confidence            3367788888999999999988874 4558999999999999999889999999999999986 7778888888999999


Q ss_pred             EEcCCCCCCcccccc
Q 002284          164 LNNSNTDSLEEMPLG  178 (943)
Q Consensus       164 L~l~~n~~~~~~p~~  178 (943)
                      |+...|. ...+|.+
T Consensus       128 Lds~~na-~~eid~d  141 (177)
T KOG4579|consen  128 LDSPENA-RAEIDVD  141 (177)
T ss_pred             hcCCCCc-cccCcHH
Confidence            9998888 6777755

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.90  E-value=4.6e-07  Score=98.59  Aligned_cols=93  Identities=28%  Similarity=0.319  Sum_probs=66.8

Q ss_pred             chhhhccCcccEEEecCccccccCc------c--------------------ccC------CCCCceeecCCCcccccch
Q 002284           82 LPRLLKLQRLRVFSLRGYLISEVPD------S--------------------IGD------LSYLRYLNLSGTQIRTLPE  129 (943)
Q Consensus        82 ~~~~~~l~~L~~L~L~~n~i~~lp~------~--------------------~~~------l~~L~~L~Ls~n~i~~lp~  129 (943)
                      |-++|.++.||+|.|.++.+...-.      .                    ++.      -..|.+-+.++|.+..+-+
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~  181 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE  181 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence            6678899999999999987653210      0                    011      1134555666777777777


Q ss_pred             hhhhccccceeecCCCcccccccHHHhccccCceEEcCCCCCCccccc
Q 002284          130 SVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPL  177 (943)
Q Consensus       130 ~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~~p~  177 (943)
                      ++.-++.|+.|||++|.....  +.+..+++|++||+++|. +..+|.
T Consensus       182 SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~-L~~vp~  226 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNC-LRHVPQ  226 (1096)
T ss_pred             HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccch-hccccc
Confidence            788889999999999865443  378889999999999998 777774

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.69  E-value=1.2e-05  Score=78.40  Aligned_cols=84  Identities=26%  Similarity=0.347  Sum_probs=36.7

Q ss_pred             ccCcccEEEecCccccccC---ccccCCCCCceeecCCCcccccchhh-hhccccceeecCCCccc-ccccHHHhccccC
Q 002284           87 KLQRLRVFSLRGYLISEVP---DSIGDLSYLRYLNLSGTQIRTLPESV-NKLYNLHTLLLEGCREL-KKKCADMGNLIKL  161 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~lp---~~~~~l~~L~~L~Ls~n~i~~lp~~i-~~L~~L~~L~L~~n~~~-~~~p~~~~~L~~L  161 (943)
                      ..++++.|||.+|.|+.-.   .-+.+|++|++|+|+.|.+..--.+. ..+.+|++|-|.+.... ......+..++.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            4555555555555554321   12245555555555555433110111 23445555555543221 1112224445555


Q ss_pred             ceEEcCCCC
Q 002284          162 HHLNNSNTD  170 (943)
Q Consensus       162 ~~L~l~~n~  170 (943)
                      +.|.++.|.
T Consensus       149 telHmS~N~  157 (418)
T KOG2982|consen  149 TELHMSDNS  157 (418)
T ss_pred             hhhhhccch
Confidence            555555543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.67  E-value=3.7e-06  Score=80.84  Aligned_cols=91  Identities=21%  Similarity=0.202  Sum_probs=63.5

Q ss_pred             hhccCcccEEEecCccccc-----cCccccCCCCCceeecCCCccc----ccc-------hhhhhccccceeecCCCccc
Q 002284           85 LLKLQRLRVFSLRGYLISE-----VPDSIGDLSYLRYLNLSGTQIR----TLP-------ESVNKLYNLHTLLLEGCREL  148 (943)
Q Consensus        85 ~~~l~~L~~L~L~~n~i~~-----lp~~~~~l~~L~~L~Ls~n~i~----~lp-------~~i~~L~~L~~L~L~~n~~~  148 (943)
                      +..+..+..+|||+|.|+.     +...|.+-.+|+.-+++.-...    ++|       .++-++++|+..+||.|.+-
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            3357888888888888763     4455666778888888764222    233       34567889999999998755


Q ss_pred             ccccHH----HhccccCceEEcCCCCCCcccc
Q 002284          149 KKKCAD----MGNLIKLHHLNNSNTDSLEEMP  176 (943)
Q Consensus       149 ~~~p~~----~~~L~~L~~L~l~~n~~~~~~p  176 (943)
                      ...|+.    |+.-+.|.||.+++|. ++.+.
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~a  136 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNG-LGPIA  136 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCC-CCccc
Confidence            554443    6677889999999887 66554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.67  E-value=6.3e-06  Score=70.77  Aligned_cols=101  Identities=20%  Similarity=0.222  Sum_probs=85.1

Q ss_pred             ccCcccEEEecCccccccCcc---ccCCCCCceeecCCCcccccchhhh-hccccceeecCCCcccccccHHHhccccCc
Q 002284           87 KLQRLRVFSLRGYLISEVPDS---IGDLSYLRYLNLSGTQIRTLPESVN-KLYNLHTLLLEGCRELKKKCADMGNLIKLH  162 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~lp~~---~~~l~~L~~L~Ls~n~i~~lp~~i~-~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~  162 (943)
                      .-+.+-.+||+.+.+..+++.   +....+|...+|++|.++..|+.|. +.+-.++|++++|. +..+|.++..++.|+
T Consensus        25 dakE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr  103 (177)
T KOG4579|consen   25 DAKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALR  103 (177)
T ss_pred             HHHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhh
Confidence            345667789999998877654   4667788888999999999998775 45699999999985 889999999999999


Q ss_pred             eEEcCCCCCCccccccccccccccccC
Q 002284          163 HLNNSNTDSLEEMPLGIGKLTCLLTLC  189 (943)
Q Consensus       163 ~L~l~~n~~~~~~p~~~~~L~~L~~L~  189 (943)
                      .|+++.|. +...|+.|..|.+|-.|+
T Consensus       104 ~lNl~~N~-l~~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen  104 SLNLRFNP-LNAEPRVIAPLIKLDMLD  129 (177)
T ss_pred             hcccccCc-cccchHHHHHHHhHHHhc
Confidence            99999999 788888888888877774

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.60  E-value=2.4e-06  Score=93.25  Aligned_cols=80  Identities=26%  Similarity=0.255  Sum_probs=42.9

Q ss_pred             ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccch-hhhhccccceeecCCCcccccccHHHhccccCceEE
Q 002284           87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPE-SVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLN  165 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~  165 (943)
                      -+++|+.|+|++|+++... .+..+++|++|||++|.++.+|. ....+. |+.|.+++|. +..+ .++.+|.+|+.||
T Consensus       185 ll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~-l~tL-~gie~LksL~~LD  260 (1096)
T KOG1859|consen  185 LLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA-LTTL-RGIENLKSLYGLD  260 (1096)
T ss_pred             HHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccH-HHhh-hhHHhhhhhhccc
Confidence            4455566666666655543 45556666666666666655553 122222 6666666553 3333 3455666666666


Q ss_pred             cCCCC
Q 002284          166 NSNTD  170 (943)
Q Consensus       166 l~~n~  170 (943)
                      +++|-
T Consensus       261 lsyNl  265 (1096)
T KOG1859|consen  261 LSYNL  265 (1096)
T ss_pred             hhHhh
Confidence            66654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.29  E-value=4.7e-05  Score=87.54  Aligned_cols=38  Identities=18%  Similarity=0.155  Sum_probs=23.9

Q ss_pred             CCCccEEEEecCCCCCcCccccccCCCCCccEEEeecC
Q 002284          562 PSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHC  599 (943)
Q Consensus       562 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n  599 (943)
                      .+.|+.+.+.+|..+...........++.|+.|++++|
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  224 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGC  224 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCc
Confidence            46777788887776665221111346788888888774

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.23  E-value=0.00041  Score=64.39  Aligned_cols=102  Identities=22%  Similarity=0.173  Sum_probs=54.2

Q ss_pred             hhhccccccccCCCccccCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceec
Q 002284          440 LYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLE  519 (943)
Q Consensus       440 ~~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~  519 (943)
                      ..+|+++|.+.....+..++.|.+|.++     .+.|..+.+.....+++|+.|.+.+|+ +..+.+-.+  +..+|+|+
T Consensus        45 d~iDLtdNdl~~l~~lp~l~rL~tLll~-----nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~p--La~~p~L~  116 (233)
T KOG1644|consen   45 DAIDLTDNDLRKLDNLPHLPRLHTLLLN-----NNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDP--LASCPKLE  116 (233)
T ss_pred             ceecccccchhhcccCCCccccceEEec-----CCcceeeccchhhhccccceEEecCcc-hhhhhhcch--hccCCccc
Confidence            3456666666665555566666666665     444555555555566666666666664 333332221  55556666


Q ss_pred             eEEEecCCCcCcc---chhccCCCCcCeeeccC
Q 002284          520 HLELINCQDLEKL---PKSLLSLSSLTEMRIHN  549 (943)
Q Consensus       520 ~L~l~~~~~~~~~---~~~~~~l~~L~~L~L~~  549 (943)
                      +|.+-+|+....-   -..+..+++|+.||..+
T Consensus       117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            6666665433211   11234455555555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.21  E-value=9.5e-05  Score=72.42  Aligned_cols=88  Identities=20%  Similarity=0.203  Sum_probs=52.3

Q ss_pred             chhhhccCcccEEEecCccccccC--ccc-cCCCCCceeecCCCcccc---cchhhhhccccceeecCCCcccccccHHH
Q 002284           82 LPRLLKLQRLRVFSLRGYLISEVP--DSI-GDLSYLRYLNLSGTQIRT---LPESVNKLYNLHTLLLEGCRELKKKCADM  155 (943)
Q Consensus        82 ~~~~~~l~~L~~L~L~~n~i~~lp--~~~-~~l~~L~~L~Ls~n~i~~---lp~~i~~L~~L~~L~L~~n~~~~~~p~~~  155 (943)
                      +-+++....+..|.+.++.|...-  ..| ...++++.|||.+|.|+.   |-.-..+|++|++|+++.|.....+ ...
T Consensus        38 ~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~l  116 (418)
T KOG2982|consen   38 YLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSL  116 (418)
T ss_pred             eeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccC
Confidence            344445556667777777665542  233 456678888888888773   3333467788888888877532221 111


Q ss_pred             -hccccCceEEcCCCC
Q 002284          156 -GNLIKLHHLNNSNTD  170 (943)
Q Consensus       156 -~~L~~L~~L~l~~n~  170 (943)
                       ..+.+|+.|-+.+..
T Consensus       117 p~p~~nl~~lVLNgT~  132 (418)
T KOG2982|consen  117 PLPLKNLRVLVLNGTG  132 (418)
T ss_pred             cccccceEEEEEcCCC
Confidence             345567777666655

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.19  E-value=0.00034  Score=81.06  Aligned_cols=106  Identities=25%  Similarity=0.288  Sum_probs=51.5

Q ss_pred             ccccEEeecccCCCCCCcchhccchhhh-ccCcccEEEecCccccc--cCccccCCCCCceeecCCCcccccchhhhhcc
Q 002284           59 QHLRTLLPVTLLSSRPGYLARSILPRLL-KLQRLRVFSLRGYLISE--VPDSIGDLSYLRYLNLSGTQIRTLPESVNKLY  135 (943)
Q Consensus        59 ~~Lr~L~~~~~~~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~--lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~  135 (943)
                      .+||.|.+.+..     .+...-|..++ .+|.||.|.+++-.+..  +-.-..++++|+.||+|+++|+.+ ..+++|+
T Consensus       122 ~nL~~LdI~G~~-----~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lk  195 (699)
T KOG3665|consen  122 QNLQHLDISGSE-----LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLK  195 (699)
T ss_pred             HhhhhcCccccc-----hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccc
Confidence            455555554432     12333344445 55666666665544321  112224555666666666666655 5556666


Q ss_pred             ccceeecCCCcccc-cccHHHhccccCceEEcCCCC
Q 002284          136 NLHTLLLEGCRELK-KKCADMGNLIKLHHLNNSNTD  170 (943)
Q Consensus       136 ~L~~L~L~~n~~~~-~~p~~~~~L~~L~~L~l~~n~  170 (943)
                      +||+|.+.+=.+.. ..-..+.+|++|++||+|...
T Consensus       196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            66666555421110 111235556666666666544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.17  E-value=0.00043  Score=64.22  Aligned_cols=104  Identities=22%  Similarity=0.193  Sum_probs=77.7

Q ss_pred             ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhh-hhccccceeecCCCccccccc--HHHhccccCce
Q 002284           87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESV-NKLYNLHTLLLEGCRELKKKC--ADMGNLIKLHH  163 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i-~~L~~L~~L~L~~n~~~~~~p--~~~~~L~~L~~  163 (943)
                      -+...-.+||++|.+..++ .|..+..|.+|.|..|+|+.|-+.+ .-+++|++|.|.+|++ ..+.  ..+..+++|++
T Consensus        40 ~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   40 TLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKLEY  117 (233)
T ss_pred             cccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcch-hhhhhcchhccCCccce
Confidence            4567778999999988875 5788999999999999999995555 4567899999999863 3332  23778889999


Q ss_pred             EEcCCCCCCccccc----cccccccccccCceEe
Q 002284          164 LNNSNTDSLEEMPL----GIGKLTCLLTLCNFVV  193 (943)
Q Consensus       164 L~l~~n~~~~~~p~----~~~~L~~L~~L~~~~~  193 (943)
                      |.+-+|. ...-+.    -+..+++|+.|+...+
T Consensus       118 Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  118 LTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence            9999888 444442    2677788887754443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.17  E-value=2.4e-05  Score=89.87  Aligned_cols=234  Identities=21%  Similarity=0.264  Sum_probs=117.2

Q ss_pred             ccccEEEeecCCCchh--hHhhhcccccccEEEeecc-CCccccc----ccccCCCCccEEeccCCCCCcccCcC--Ccc
Q 002284          678 QALKFLSIWHCSKLES--IVERLDNKISLEVIEIVSC-ENLKMLP----HGLHKLWHLQEIDIQDCENLVSFPEG--GLL  748 (943)
Q Consensus       678 ~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~l~~~-~~~~~~p----~~~~~l~~L~~L~l~~~~~l~~~p~~--~~~  748 (943)
                      +.|+.+.+.+|..+..  +......++.|+.|++++| ......+    .....+++|+.|++++|..++..--.  ...
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~  267 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR  267 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence            5788888888887775  5566777888888888773 2222222    22344677788888877644332211  112


Q ss_pred             ccccceeeeccccCCcc--CCCcCCCCCCCCceeecCCCCCccc--cCCCCCCCCcceEEecCC---cchhccccccCCC
Q 002284          749 SAKLKRLVIYGCKKLEA--LPEGMHNLSSLQYLTIGGVPSLLCF--TEDGLFPTNLHSLEIDGM---KIWKSLMQLGGFH  821 (943)
Q Consensus       749 l~~L~~L~l~~~~~l~~--~p~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~L~~L~l~~c---~~l~~~~~~~~~~  821 (943)
                      +++|+.|.+.+|..+..  +-.....++.|++|++++|..+..-  .......++|+.|.+..+   ..++.........
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~  347 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLT  347 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhc
Confidence            66777777777764211  1112255677777777777765221  111112344444333332   2333332211111


Q ss_pred             CC-CCccEEEecCCCCcCcccCcccccccCCCCCCcc-EEEeecCCCC-ccccccc-CCCCCCeEeecCCCCCccCCCCC
Q 002284          822 RY-TSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLT-QLEIFNFPNL-ERLSSSI-CDQNLTSLKLTNCPKLKYFPEKG  897 (943)
Q Consensus       822 ~l-~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l-~~l~~~~-~~~~L~~L~l~~C~~L~~~~~~~  897 (943)
                      .. ..++.+.+.+| ..++.......     ...... .+.+.+||.+ ..+.... .+.+++.|.+..|...+.-.-..
T Consensus       348 ~~~d~~~~~~~~~~-~~l~~~~l~~~-----~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~  421 (482)
T KOG1947|consen  348 LTSDDLAELILRSC-PKLTDLSLSYC-----GISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRC  421 (482)
T ss_pred             cCchhHhHHHHhcC-CCcchhhhhhh-----hccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHH
Confidence            11 14555555553 33322221110     011111 3555566666 3332211 22336777777777665532111


Q ss_pred             C---CCccceEeecCCchHHHHh
Q 002284          898 L---PASLLRLEIKKCPLIEKMC  917 (943)
Q Consensus       898 l---~~sL~~L~i~~C~~l~~~~  917 (943)
                      .   ...++.+++.+|+.+....
T Consensus       422 ~~~~~~~~~~l~~~~~~~~~~~~  444 (482)
T KOG1947|consen  422 LADSCSNLKDLDLSGCRVITLKS  444 (482)
T ss_pred             HhhhhhccccCCccCcccccchh
Confidence            1   3456777777777666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.99  E-value=0.00043  Score=80.26  Aligned_cols=105  Identities=23%  Similarity=0.258  Sum_probs=69.5

Q ss_pred             ccCcccEEEecCcccc--ccCccc-cCCCCCceeecCCCccc--ccchhhhhccccceeecCCCcccccccHHHhccccC
Q 002284           87 KLQRLRVFSLRGYLIS--EVPDSI-GDLSYLRYLNLSGTQIR--TLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKL  161 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~--~lp~~~-~~l~~L~~L~Ls~n~i~--~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L  161 (943)
                      .-.+|+.||+++...-  .-|..+ ..|+.||.|.+++-.+.  +.-.-..++++|..||+|+++ +..+ .++++|++|
T Consensus       120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknL  197 (699)
T KOG3665|consen  120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNL  197 (699)
T ss_pred             HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccH
Confidence            5678888888886521  224444 45788888888876543  222345678888888888865 4544 678888888


Q ss_pred             ceEEcCCCCCCcccc--ccccccccccccCceEec
Q 002284          162 HHLNNSNTDSLEEMP--LGIGKLTCLLTLCNFVVG  194 (943)
Q Consensus       162 ~~L~l~~n~~~~~~p--~~~~~L~~L~~L~~~~~~  194 (943)
                      +.|.+.+-. ...-.  .++.+|++|+.|+.....
T Consensus       198 q~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  198 QVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             HHHhccCCC-CCchhhHHHHhcccCCCeeeccccc
Confidence            888877655 33222  246677788877655443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.63  E-value=0.00075  Score=38.77  Aligned_cols=19  Identities=42%  Similarity=0.882  Sum_probs=9.5

Q ss_pred             CceeecCCCcccccchhhh
Q 002284          114 LRYLNLSGTQIRTLPESVN  132 (943)
Q Consensus       114 L~~L~Ls~n~i~~lp~~i~  132 (943)
                      ||+|||++|+|+.+|++|+
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            4555555555555554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.00053  Score=66.71  Aligned_cols=78  Identities=27%  Similarity=0.262  Sum_probs=55.0

Q ss_pred             ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccc--hhhhhccccceeecCCCcccccccH-----HHhccc
Q 002284           87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLP--ESVNKLYNLHTLLLEGCRELKKKCA-----DMGNLI  159 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp--~~i~~L~~L~~L~L~~n~~~~~~p~-----~~~~L~  159 (943)
                      +|+.|+||.||-|.|+.+ ..+..+++|+.|+|..|.|..+-  ..+.++++|++|.|..|.-.+.-+.     .+.-|+
T Consensus        39 kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP  117 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP  117 (388)
T ss_pred             hcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence            788888888888888877 34777888888888888887773  3456777888888877765554443     244556


Q ss_pred             cCceEE
Q 002284          160 KLHHLN  165 (943)
Q Consensus       160 ~L~~L~  165 (943)
                      +|+.||
T Consensus       118 nLkKLD  123 (388)
T KOG2123|consen  118 NLKKLD  123 (388)
T ss_pred             cchhcc
Confidence            666654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.33  E-value=0.00052  Score=66.76  Aligned_cols=104  Identities=20%  Similarity=0.207  Sum_probs=80.7

Q ss_pred             ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccH--HHhccccCceE
Q 002284           87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCA--DMGNLIKLHHL  164 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~--~~~~L~~L~~L  164 (943)
                      .+.+.+.|++-++.+..+ .-..+++.|++|.||-|.|+.+ +.+..+++|+.|+|..|. +..+-+  -+.++++|+.|
T Consensus        17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhH
Confidence            567788899999988876 2347899999999999999999 568999999999999986 444432  37889999999


Q ss_pred             EcCCCCCCccccc-----cccccccccccCceEe
Q 002284          165 NNSNTDSLEEMPL-----GIGKLTCLLTLCNFVV  193 (943)
Q Consensus       165 ~l~~n~~~~~~p~-----~~~~L~~L~~L~~~~~  193 (943)
                      -|..|.=.+.-+.     .+.-|++|+.|++..+
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V  127 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV  127 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhccCccc
Confidence            9998874454443     2566788888865443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.29  E-value=0.0029  Score=61.55  Aligned_cols=83  Identities=19%  Similarity=0.200  Sum_probs=58.2

Q ss_pred             ccccCCCCCceeecCCCccc-----ccchhhhhccccceeecCCCccccc----cc-------HHHhccccCceEEcCCC
Q 002284          106 DSIGDLSYLRYLNLSGTQIR-----TLPESVNKLYNLHTLLLEGCRELKK----KC-------ADMGNLIKLHHLNNSNT  169 (943)
Q Consensus       106 ~~~~~l~~L~~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~n~~~~~----~p-------~~~~~L~~L~~L~l~~n  169 (943)
                      ..+..+..+..++||+|.|.     .+...|.+-.+|++.+++.- +.+.    +|       ..+-++++|+..++++|
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN  102 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN  102 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence            33455788999999999887     35556777889999988863 2322    23       34567899999999999


Q ss_pred             CCCcccccc----ccccccccccC
Q 002284          170 DSLEEMPLG----IGKLTCLLTLC  189 (943)
Q Consensus       170 ~~~~~~p~~----~~~L~~L~~L~  189 (943)
                      .+....|..    |++-+.|.+|.
T Consensus       103 Afg~~~~e~L~d~is~~t~l~HL~  126 (388)
T COG5238         103 AFGSEFPEELGDLISSSTDLVHLK  126 (388)
T ss_pred             ccCcccchHHHHHHhcCCCceeEE
Confidence            865556643    45556666663

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.11  E-value=0.0036  Score=35.94  Aligned_cols=22  Identities=27%  Similarity=0.570  Sum_probs=18.7

Q ss_pred             cccEEEecCccccccCccccCC
Q 002284           90 RLRVFSLRGYLISEVPDSIGDL  111 (943)
Q Consensus        90 ~L~~L~L~~n~i~~lp~~~~~l  111 (943)
                      +|++|||++|.++.+|.+|++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT-
T ss_pred             CccEEECCCCcCEeCChhhcCC
Confidence            5899999999999999888754

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.95  E-value=0.0042  Score=60.61  Aligned_cols=82  Identities=23%  Similarity=0.296  Sum_probs=33.2

Q ss_pred             ccCcccEEEecCccccccCccccCCCCCceeecCCC--ccc-ccchhhhhccccceeecCCCccccccc--HHHhccccC
Q 002284           87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGT--QIR-TLPESVNKLYNLHTLLLEGCRELKKKC--ADMGNLIKL  161 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n--~i~-~lp~~i~~L~~L~~L~L~~n~~~~~~p--~~~~~L~~L  161 (943)
                      .+..|+.|++.+..++.+ ..|..|++|++|.++.|  ++. .++.-...+++|++|++++|. +..+-  .....+.+|
T Consensus        41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENL  118 (260)
T ss_pred             cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcch
Confidence            334444444444433332 22334445555555555  222 222222333555555555543 21110  113344445


Q ss_pred             ceEEcCCCC
Q 002284          162 HHLNNSNTD  170 (943)
Q Consensus       162 ~~L~l~~n~  170 (943)
                      ..|++..|.
T Consensus       119 ~~Ldl~n~~  127 (260)
T KOG2739|consen  119 KSLDLFNCS  127 (260)
T ss_pred             hhhhcccCC
Confidence            555555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.55  E-value=0.035  Score=50.13  Aligned_cols=117  Identities=10%  Similarity=0.235  Sum_probs=56.4

Q ss_pred             cccccccccEEeecccCCCCCCcchhccchhhh-ccCcccEEEecCccccccC-ccccCCCCCceeecCCCcccccc-hh
Q 002284           54 DLYDIQHLRTLLPVTLLSSRPGYLARSILPRLL-KLQRLRVFSLRGYLISEVP-DSIGDLSYLRYLNLSGTQIRTLP-ES  130 (943)
Q Consensus        54 ~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~  130 (943)
                      .|.++++|+.+.+...        ...+....| .++.|+.+.+..+ +..++ ..|.++..|+++.+.. .+..++ ..
T Consensus         7 ~F~~~~~l~~i~~~~~--------~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~   76 (129)
T PF13306_consen    7 AFYNCSNLESITFPNT--------IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNA   76 (129)
T ss_dssp             TTTT-TT--EEEETST----------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTT
T ss_pred             HHhCCCCCCEEEECCC--------eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccc
Confidence            4556667777765432        345666666 7777888888764 66664 4567777788888865 566664 45


Q ss_pred             hhhccccceeecCCCccccccc-HHHhccccCceEEcCCCCCCcccccc-ccccccc
Q 002284          131 VNKLYNLHTLLLEGCRELKKKC-ADMGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCL  185 (943)
Q Consensus       131 i~~L~~L~~L~L~~n~~~~~~p-~~~~~L~~L~~L~l~~n~~~~~~p~~-~~~L~~L  185 (943)
                      |...++|+.+++..+  +..++ ..|.+. +|+.+.+..+  ...++.. |.+.++|
T Consensus        77 F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   77 FSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL  128 (129)
T ss_dssp             TTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred             ccccccccccccCcc--ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence            667788888887654  33333 346666 7777777653  3444443 5544444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.51  E-value=0.00092  Score=63.28  Aligned_cols=86  Identities=15%  Similarity=0.167  Sum_probs=76.5

Q ss_pred             hhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCce
Q 002284           84 RLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHH  163 (943)
Q Consensus        84 ~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~  163 (943)
                      ++..++..++||++.|++..+-..|+-++.|.-||++.|.|..+|..++.+..++.+++..|. ....|.++++++++++
T Consensus        37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKK  115 (326)
T ss_pred             hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcch
Confidence            444788899999999998888778888999999999999999999999999999999998875 7888999999999999


Q ss_pred             EEcCCCC
Q 002284          164 LNNSNTD  170 (943)
Q Consensus       164 L~l~~n~  170 (943)
                      ++...+.
T Consensus       116 ~e~k~~~  122 (326)
T KOG0473|consen  116 NEQKKTE  122 (326)
T ss_pred             hhhccCc
Confidence            9998887

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.15  E-value=0.0086  Score=58.53  Aligned_cols=62  Identities=23%  Similarity=0.155  Sum_probs=47.4

Q ss_pred             ccCCCCCceeecCCCcccccchhhhhccccceeecCCC--cccccccHHHhccccCceEEcCCCC
Q 002284          108 IGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGC--RELKKKCADMGNLIKLHHLNNSNTD  170 (943)
Q Consensus       108 ~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n--~~~~~~p~~~~~L~~L~~L~l~~n~  170 (943)
                      .-.+..|+.|++.+..++.+ ..+-.|++|++|.++.|  +....++.-..++++|++|++++|+
T Consensus        39 ~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk  102 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK  102 (260)
T ss_pred             cccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence            34556777777777777666 44558899999999999  5555555556677999999999998

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.93  E-value=0.014  Score=30.90  Aligned_cols=16  Identities=44%  Similarity=0.748  Sum_probs=5.9

Q ss_pred             CCceeecCCCcccccc
Q 002284          113 YLRYLNLSGTQIRTLP  128 (943)
Q Consensus       113 ~L~~L~Ls~n~i~~lp  128 (943)
                      +|++|+|++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4455555555544443

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.23  E-value=0.12  Score=46.46  Aligned_cols=104  Identities=15%  Similarity=0.204  Sum_probs=35.1

Q ss_pred             hhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCC-
Q 002284          483 LLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVL-  561 (943)
Q Consensus       483 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~-  561 (943)
                      .|.+.++|+.+.+..  .++.+....   |..+++|+.+.+.++ ....-..+|..+++++.+.+.+  ....++...+ 
T Consensus         7 ~F~~~~~l~~i~~~~--~~~~I~~~~---F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~   78 (129)
T PF13306_consen    7 AFYNCSNLESITFPN--TIKKIGENA---FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFS   78 (129)
T ss_dssp             TTTT-TT--EEEETS--T--EE-TTT---TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTT
T ss_pred             HHhCCCCCCEEEECC--CeeEeChhh---ccccccccccccccc-ccccceeeeecccccccccccc--ccccccccccc
Confidence            344444444444442  233444333   445545555555442 2211222444444555555543  1222332222 


Q ss_pred             -CCCccEEEEecCCCCCcCccccccCCCCCccEEEeec
Q 002284          562 -PSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRH  598 (943)
Q Consensus       562 -~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~  598 (943)
                       .++++.+.+..+  +..++... +.+. .|+.+.+..
T Consensus        79 ~~~~l~~i~~~~~--~~~i~~~~-f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   79 NCTNLKNIDIPSN--ITEIGSSS-FSNC-NLKEINIPS  112 (129)
T ss_dssp             T-TTECEEEETTT---BEEHTTT-TTT--T--EEE-TT
T ss_pred             ccccccccccCcc--ccEEchhh-hcCC-CceEEEECC
Confidence             345555555332  22333322 2344 566555543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.89  E-value=0.04  Score=29.19  Aligned_cols=17  Identities=24%  Similarity=0.507  Sum_probs=11.5

Q ss_pred             CcccEEEecCccccccC
Q 002284           89 QRLRVFSLRGYLISEVP  105 (943)
Q Consensus        89 ~~L~~L~L~~n~i~~lp  105 (943)
                      ++||+|++++|+++.+|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            47999999999998876

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.78  E-value=0.0055  Score=57.25  Aligned_cols=92  Identities=16%  Similarity=0.200  Sum_probs=60.2

Q ss_pred             ccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCC--CCCCcceEEecCCcchhcccccc
Q 002284          741 SFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGL--FPTNLHSLEIDGMKIWKSLMQLG  818 (943)
Q Consensus       741 ~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~  818 (943)
                      +.|.....=..++.++-+++.....--+.+.++++++.|.+.+|..+.+..-+..  -.++|+.|+|++|+.+++... .
T Consensus        92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-~  170 (221)
T KOG3864|consen   92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-A  170 (221)
T ss_pred             cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-H
Confidence            3443323333677888887776555445667778888888888887765533221  247888888888888876653 2


Q ss_pred             CCCCCCCccEEEecC
Q 002284          819 GFHRYTSLRRLAISG  833 (943)
Q Consensus       819 ~~~~l~~L~~L~l~~  833 (943)
                      .+..+++|+.|.+.+
T Consensus       171 ~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  171 CLLKLKNLRRLHLYD  185 (221)
T ss_pred             HHHHhhhhHHHHhcC
Confidence            456677777777766

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.75  E-value=0.0056  Score=58.15  Aligned_cols=87  Identities=18%  Similarity=0.158  Sum_probs=76.6

Q ss_pred             ccccC-ccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEcCCCCCCccccccc
Q 002284          101 ISEVP-DSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGI  179 (943)
Q Consensus       101 i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~~p~~~  179 (943)
                      +..+| ..+...+.-+.||++.|++..+-..|+.++.|..||++.|. +..+|..++.+..++++++..|. ....|..+
T Consensus        30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~  107 (326)
T KOG0473|consen   30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ  107 (326)
T ss_pred             hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence            34454 45777889999999999999988889999999999999985 88999999999999999999888 88999999


Q ss_pred             cccccccccC
Q 002284          180 GKLTCLLTLC  189 (943)
Q Consensus       180 ~~L~~L~~L~  189 (943)
                      ++++.++.++
T Consensus       108 ~k~~~~k~~e  117 (326)
T KOG0473|consen  108 KKEPHPKKNE  117 (326)
T ss_pred             cccCCcchhh
Confidence            9999988874

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.40  E-value=0.02  Score=53.65  Aligned_cols=85  Identities=16%  Similarity=0.257  Sum_probs=51.1

Q ss_pred             CCcceEEecCCcchhccccccCCCCCCCccEEEecCCCCcCcccCcccccccCCCCCCccEEEeecCCCCcccccc--cC
Q 002284          798 TNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSS--IC  875 (943)
Q Consensus       798 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--~~  875 (943)
                      ..++.+|-+++..+.....  .+..+++++.|.+.+|    ..+.+.....-+...++|+.|++++||.+++-...  ..
T Consensus       101 ~~IeaVDAsds~I~~eGle--~L~~l~~i~~l~l~~c----k~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~  174 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLE--HLRDLRSIKSLSLANC----KYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK  174 (221)
T ss_pred             ceEEEEecCCchHHHHHHH--HHhccchhhhheeccc----cchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH
Confidence            4566677777776666554  5777778888888886    34444443333335666777777777766654321  13


Q ss_pred             CCCCCeEeecCCC
Q 002284          876 DQNLTSLKLTNCP  888 (943)
Q Consensus       876 ~~~L~~L~l~~C~  888 (943)
                      +++|+.|.+.+.+
T Consensus       175 lknLr~L~l~~l~  187 (221)
T KOG3864|consen  175 LKNLRRLHLYDLP  187 (221)
T ss_pred             hhhhHHHHhcCch
Confidence            5555555555543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.36  E-value=0.1  Score=31.34  Aligned_cols=20  Identities=45%  Similarity=0.677  Sum_probs=14.4

Q ss_pred             CCCCceeecCCCcccccchh
Q 002284          111 LSYLRYLNLSGTQIRTLPES  130 (943)
Q Consensus       111 l~~L~~L~Ls~n~i~~lp~~  130 (943)
                      |++|++|+|++|+|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            45677788888877777653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.36  E-value=0.1  Score=31.34  Aligned_cols=20  Identities=45%  Similarity=0.677  Sum_probs=14.4

Q ss_pred             CCCCceeecCCCcccccchh
Q 002284          111 LSYLRYLNLSGTQIRTLPES  130 (943)
Q Consensus       111 l~~L~~L~Ls~n~i~~lp~~  130 (943)
                      |++|++|+|++|+|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            45677788888877777653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.04  E-value=0.38  Score=28.83  Aligned_cols=21  Identities=29%  Similarity=0.447  Sum_probs=18.1

Q ss_pred             cCcccEEEecCccccccCccc
Q 002284           88 LQRLRVFSLRGYLISEVPDSI  108 (943)
Q Consensus        88 l~~L~~L~L~~n~i~~lp~~~  108 (943)
                      +++|++|+|++|.+..+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            578999999999999998643

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.04  E-value=0.38  Score=28.83  Aligned_cols=21  Identities=29%  Similarity=0.447  Sum_probs=18.1

Q ss_pred             cCcccEEEecCccccccCccc
Q 002284           88 LQRLRVFSLRGYLISEVPDSI  108 (943)
Q Consensus        88 l~~L~~L~L~~n~i~~lp~~~  108 (943)
                      +++|++|+|++|.+..+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            578999999999999998643

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=80.08  E-value=1.3  Score=26.60  Aligned_cols=17  Identities=35%  Similarity=0.565  Sum_probs=11.7

Q ss_pred             CCCCceeecCCCccccc
Q 002284          111 LSYLRYLNLSGTQIRTL  127 (943)
Q Consensus       111 l~~L~~L~Ls~n~i~~l  127 (943)
                      +++|++|+|++|+|+.+
T Consensus         1 L~~L~~L~L~~NkI~~I   17 (26)
T smart00365        1 LTNLEELDLSQNKIKKI   17 (26)
T ss_pred             CCccCEEECCCCcccee
Confidence            35677777777777655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	943
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		2e-04

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 17/155 (10%)
Query: 644 LECLEIHSCPSLTCLISK-NELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKI 702
           L  L I +CP LT L        A+ ++  + NL Q+L+       + + S+   + N  
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNL-QSLRL----EWTGIRSLPASIANLQ 206
Query: 703 SLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPE--GGLLSAKLKRLVIYGC 760
           +L+ ++I +   L  L   +H L  L+E+D++ C  L ++P   GG   A LKRL++  C
Sbjct: 207 NLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG--RAPLKRLILKDC 263
Query: 761 KKLEALPEGMHNLSSLQYLTIGG------VPSLLC 789
             L  LP  +H L+ L+ L + G      +PSL+ 
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	943
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 92.7 bits (231), Expect = 2e-20
 Identities = 60/296 (20%), Positives = 101/296 (34%), Gaps = 45/296 (15%)

Query: 518 LEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALK 577
            E+L       L      L           +   S      +  P            ALK
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETR----TGRALK 69

Query: 578 FLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQL------------------EI 619
              +            L++R   L       Q P    +L                   +
Sbjct: 70  ATADLLEDATQPGRVALELRSVPL------PQFPDQAFRLSHLQHMTIDAAGLMELPDTM 123

Query: 620 YNCDNLRTLTAE----EGIHSSRRHTSLLECLEIHSCPSLTCL---ISKNELRAALDYLV 672
                L TLT        + +S    + L  L I +CP LT L   ++  +       L 
Sbjct: 124 QQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL- 182

Query: 673 VGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEID 732
                  L+ L +   + + S+   + N  +L+ ++I +   L  L   +H L  L+E+D
Sbjct: 183 -----VNLQSLRL-EWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELD 235

Query: 733 IQDCENLVSFPEG-GLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSL 787
           ++ C  L ++P   G  +  LKRL++  C  L  LP  +H L+ L+ L + G  +L
Sbjct: 236 LRGCTALRNYPPIFGGRA-PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.3 bits (204), Expect = 5e-17
 Identities = 29/109 (26%), Positives = 44/109 (40%)

Query: 80  SILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHT 139
                   L  L+   L    I  +P SI +L  L+ L +  + +  L  +++ L  L  
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEE 233

Query: 140 LLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTL 188
           L L GC  L+      G    L  L   +  +L  +PL I +LT L  L
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.3 bits (204), Expect = 6e-17
 Identities = 64/319 (20%), Positives = 111/319 (34%), Gaps = 58/319 (18%)

Query: 473 LSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKL 532
                +N        A     +IE           D  +         LEL +   L + 
Sbjct: 38  HYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVP-LPQF 96

Query: 533 PKSLLSLSSLTEMRIHNCSSLVSFPEAV--LPSQLRVISIWDSGALKFLPEAWMLDNNSS 590
           P     LS L  M I     L+  P+ +      L  +++  +  L+ LP +  + + + 
Sbjct: 97  PDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAG-LETLTLARN-PLRALPAS--IASLNR 151

Query: 591 LEILDIRHCHLLTYIAGVQLPPSLKQL----EIYNCDNLRTLTAEEGIHSSRRHTSLLEC 646
           L  L IR C  LT     +LP  L       E     NL++L             + +  
Sbjct: 152 LRELSIRACPELT-----ELPEPLASTDASGEHQGLVNLQSLRL---------EWTGIRS 197

Query: 647 L--EIHSCPSLTCL-ISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKIS 703
           L   I +  +L  L I  + L A      + +LP+ L+ L +  C+ L +          
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSALGP--AIHHLPK-LEELDLRGCTALRN---------- 244

Query: 704 LEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEG-GLLSAKLKRLVIYGCKK 762
                          P        L+ + ++DC NL++ P     L+ +L++L + GC  
Sbjct: 245 --------------YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT-QLEKLDLRGCVN 289

Query: 763 LEALPEGMHNLSSLQYLTI 781
           L  LP  +  L +   + +
Sbjct: 290 LSRLPSLIAQLPANCIILV 308

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.9 bits (190), Expect = 3e-15
 Identities = 51/257 (19%), Positives = 95/257 (36%), Gaps = 47/257 (18%)

Query: 86  LKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGC 145
                     LR   + + PD    LS+L+++ +    +  LP+++ +   L TL L   
Sbjct: 78  ATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN 137

Query: 146 RELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELK 205
             L+   A + +L +L  L+      L E+P  +                     L+ L+
Sbjct: 138 P-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL-------VNLQSLR 189

Query: 206 L----LTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTE 261
           L    +  L    +I+ L                 +NLK L +      + LS+      
Sbjct: 190 LEWTGIRSLPA--SIANL-----------------QNLKSLKI----RNSPLSA------ 220

Query: 262 KGVLDMLKPHRSLEQFCISGFGG-KKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQL 319
             +   +     LE+  + G    + +P   G    + L  L  +DCS   ++P  + +L
Sbjct: 221 --LGPAIHHLPKLEELDLRGCTALRNYPPIFGG--RAPLKRLILKDCSNLLTLPLDIHRL 276

Query: 320 PSLKHLEVRGMSRVKRL 336
             L+ L++RG   + RL
Sbjct: 277 TQLEKLDLRGCVNLSRL 293

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 72.7 bits (179), Expect = 9e-14
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 1/103 (0%)

Query: 87  KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSG-TQIRTLPESVNKLYNLHTLLLEGC 145
            LQ L+   +R   +S +  +I  L  L  L+L G T +R  P        L  L+L+ C
Sbjct: 204 NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263

Query: 146 RELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTL 188
             L     D+  L +L  L+     +L  +P  I +L     +
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.3 bits (147), Expect = 8e-10
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 2/92 (2%)

Query: 79  RSILPRLLKLQRLRVFSLRGY-LISEVPDSIGDLSYLRYLNLSG-TQIRTLPESVNKLYN 136
            ++ P +  L +L    LRG   +   P   G  + L+ L L   + + TLP  +++L  
Sbjct: 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278

Query: 137 LHTLLLEGCRELKKKCADMGNLIKLHHLNNSN 168
           L  L L GC  L +  + +  L     +    
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 28/214 (13%), Positives = 53/214 (24%), Gaps = 55/214 (25%)

Query: 691 LESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSA 750
           + S      +    E +       L+     L +       D     +            
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNP-- 58

Query: 751 KLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKI 810
              ++     + L+A  + + + +                           +LE+  + +
Sbjct: 59  ---QIETRTGRALKATADLLEDATQP----------------------GRVALELRSVPL 93

Query: 811 ---WKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPA---CLTQLEIFNF 864
                   +L      + L+ + I                L   LP        LE    
Sbjct: 94  PQFPDQAFRL------SHLQHMTIDAA------------GL-MELPDTMQQFAGLETLTL 134

Query: 865 PN--LERLSSSICD-QNLTSLKLTNCPKLKYFPE 895
               L  L +SI     L  L +  CP+L   PE
Sbjct: 135 ARNPLRALPASIASLNRLRELSIRACPELTELPE 168

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 58/366 (15%), Positives = 102/366 (27%), Gaps = 121/366 (33%)

Query: 80  SILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSY--LRYLNLSGTQIRTLPESVNKLYNL 137
               R       ++ +  G  +    D + D +      L L    +   P+   +L +L
Sbjct: 47  HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHL 106

Query: 138 HTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDS 197
             + ++                            L E+P  + +                
Sbjct: 107 QHMTIDAA-------------------------GLMELPDTMQQFA-------------- 127

Query: 198 GSGLRELKL----LTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGL 253
             GL  L L    L  L  +  I+ L                   L+ L +   R+   L
Sbjct: 128 --GLETLTLARNPLRALPAS--IASL-----------------NRLRELSI---RACPEL 163

Query: 254 SSR-EAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTS 312
           +   E           +   +L+   +   G +  P  +      NL +LK ++  +   
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN--LQNLKSLKIRNSPLSAL 221

Query: 313 MPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCS 372
            P++  LP L+ L++RG +                    L                    
Sbjct: 222 GPAIHHLPKLEELDLRGCTA-------------------LRNY----------------P 246

Query: 373 QEIEGFPKLRELHIVRCSKLQGTLP------THLTLLDILVVQNFTSLP-------ALCK 419
               G   L+ L +  CS L  TLP      T L  LD+    N + LP       A C 
Sbjct: 247 PIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305

Query: 420 LRIDRC 425
           + +   
Sbjct: 306 ILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 60/432 (13%), Positives = 109/432 (25%), Gaps = 126/432 (29%)

Query: 126 TLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCL 185
           +     +       L  +G   L+     +    + ++ + +   S              
Sbjct: 3   SSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNP 58

Query: 186 LTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLE 245
                              + L      L  +                        L L 
Sbjct: 59  QIETR------------TGRALKATADLLEDATQPG-----------------RVALEL- 88

Query: 246 WTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQ 305
               +  L            D       L+   I   G  + P  +    F+ L TL   
Sbjct: 89  ---RSVPLPQ--------FPDQAFRLSHLQHMTIDAAGLMELPDTMQQ--FAGLETLTLA 135

Query: 306 DCSMCTSMP-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWE 364
              +  ++P S+  L  L+ L +R    +  L       D+                   
Sbjct: 136 RNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDAS------------------ 176

Query: 365 EWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDR 424
                    E +G   L+ L +   + ++ +LP            +  +L  L  L+I  
Sbjct: 177 --------GEHQGLVNLQSLRL-EWTGIR-SLP-----------ASIANLQNLKSLKIRN 215

Query: 425 CKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNE-TQL 483
                        S L   I +           LPKL+ELD+                  
Sbjct: 216 SPL----------SALGPAIHH-----------LPKLEELDLR---------GCTALRNY 245

Query: 484 LQDIATLKRLK---IERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLS 540
                    LK   ++ C  L  L  +         +LE L+L  C +L +LP  +  L 
Sbjct: 246 PPIFGGRAPLKRLILKDCSNLLTLPLD----IHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301

Query: 541 SLTEMRIHNCSS 552
           +   + +     
Sbjct: 302 ANCIILVPPHLQ 313

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.0 bits (179), Expect = 3e-13
 Identities = 87/600 (14%), Positives = 176/600 (29%), Gaps = 117/600 (19%)

Query: 363 WEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLP------THLTLLDILVVQNFTSLPA 416
           W +              ++  L +      +G +P      T L +L      + T    
Sbjct: 311 WGDQPGVDLDNN----GRVTGLSL-AGFGAKGRVPDAIGQLTELKVLS-FGTHSETVSGR 364

Query: 417 LCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDIS-----IIID 471
           L           +    ++      +    +MFL    +L L  L +  I+       I 
Sbjct: 365 LFGDE------ELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418

Query: 472 GLSYIWQNETQLLQDIATLKRL--KIERCPKLQFLEEEDQW--QFGLSFRLEHLELINCQ 527
             S I   +TQ+      +  +   I+R  KLQ +   +       ++   E       +
Sbjct: 419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478

Query: 528 DLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAV--LPSQLRVISIWD---------SGAL 576
             E    S  +L  LT++ ++NC ++   P+ +  LP  L+ ++I               
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE-LQSLNIACNRGISAAQLKADW 537

Query: 577 KFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHS 636
             L +    D    ++I  + + +L       + P S     +     L  L        
Sbjct: 538 TRLADD--EDTGPKIQIFYMGYNNL------EEFPAS---ASLQKMVKLGLLDC------ 580

Query: 637 SRRHTSLLECLEIHSCPSLTCL-ISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIV 695
              H  +       +   LT L +  N++   +         Q ++ L   H  KL+ I 
Sbjct: 581 --VHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQ-VEGLGFSHN-KLKYIP 635

Query: 696 ERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRL 755
                          S   +  +              I      +S             +
Sbjct: 636 NIF---------NAKSVYVMGSV--------DFSYNKIGSEGRNISCSMDDYKGINASTV 678

Query: 756 VIYGCKKLEALPEGM-HNLSSLQYLT-----IGGVPSLLCFTEDGLFP--TNLHSLEIDG 807
            +    +++  P  +    S +  +      +  +P      +DG +     L ++++  
Sbjct: 679 TLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737

Query: 808 MKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPAC---LTQLEIFNF 864
            K+  SL           L  + +S                 ++ P      +QL+ F  
Sbjct: 738 NKL-TSLSDDFRATTLPYLSNMDVSYN------------CF-SSFPTQPLNSSQLKAFGI 783

Query: 865 PNLERLSS---------SICD-QNLTSLKLTNCPKLKYFPEKGLPASLLRLEIKKCPLIE 914
            +                I    +L  L++ +   ++   EK  P  L  L+I   P I 
Sbjct: 784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLTP-QLYILDIADNPNIS 841

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.9 bits (158), Expect = 8e-11
 Identities = 74/615 (12%), Positives = 161/615 (26%), Gaps = 148/615 (24%)

Query: 85  LLKLQRLRVFSLRGY-LISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLE 143
           L    R+   SL G+     VPD+IG L+ L+ L+                     +   
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE- 377

Query: 144 GCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRE 203
                               ++        +  L +  L       N  +          
Sbjct: 378 -------------ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRIS 424

Query: 204 LKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKG 263
           LK       T  I+ +             +     L+++      + +  +      +  
Sbjct: 425 LKDTQIGNLTNRITFI----------SKAIQRLTKLQIIYF----ANSPFTYDNIAVDW- 469

Query: 264 VLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSL 322
             D    +    +     +               +L  ++  +C   T +P  +  LP L
Sbjct: 470 -EDANSDYAKQYENEELSWSN-----------LKDLTDVELYNCPNMTQLPDFLYDLPEL 517

Query: 323 KHLEVRG---------MSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQ 373
           + L +            +   RL  +          P ++  +                 
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDT------GPKIQIFYMGYNN------------ 559

Query: 374 EIEGFPKLRELHIVRCSKLQGTLPTHLTLLD--ILVVQNFTSLPALCKLRIDRCKKVVWR 431
            +E FP      + +  KL       L  +   +  ++ F +   L  L++D        
Sbjct: 560 -LEEFPA--SASLQKMVKLG-----LLDCVHNKVRHLEAFGTNVKLTDLKLDYN------ 605

Query: 432 STTDCESQLYKDISNQMFLGGPLKLQLPKLDELD-----ISIIIDGLSYIWQNETQLLQD 486
                  Q+ ++I               +++ L      +  I +  +          + 
Sbjct: 606 -------QI-EEIPEDFCAF------TDQVEGLGFSHNKLKYIPNIFN---------AKS 642

Query: 487 IATLKRLKIERCPKLQFLEEEDQWQFGL--SFRLEHLELINCQDLEKLPKSLLS-LSSLT 543
           +  +  +      K+                     + L   + ++K P  L +  S ++
Sbjct: 643 VYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPIS 700

Query: 544 EMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFL----------PEAWMLDNNSSLEI 593
            + + N   + S PE  L  +           L  +           + +       L  
Sbjct: 701 TIILSNN-LMTSIPENSLKPKDGNYKNTYL--LTTIDLRFNKLTSLSDDFRATTLPYLSN 757

Query: 594 LDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECL--EIHS 651
           +D+ +    +       P      +  N   L+         +      +L      I +
Sbjct: 758 MDVSYNCFSS------FPT-----QPLNSSQLKAFGIRHQRDAE--GNRILRQWPTGITT 804

Query: 652 CPSLTCL-ISKNELR 665
           CPSL  L I  N++R
Sbjct: 805 CPSLIQLQIGSNDIR 819

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 5e-08
 Identities = 60/529 (11%), Positives = 145/529 (27%), Gaps = 99/529 (18%)

Query: 55  LYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYL 114
           L   Q L     +    +R   +        + L+  +        I+ +  +I  L+ L
Sbjct: 392 LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ-IGNLTNRITFISKAIQRLTKL 450

Query: 115 RYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEE 174
           + +  + +       +V    +      +  ++ + +     NL  L  +   N  ++ +
Sbjct: 451 QIIYFANSPFTYDNIAV----DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ 506

Query: 175 MPLGIGKLTCLLTL---CNFVVGKDSGSG--------LRELKLLTHLCGTLNISKLENVK 223
           +P  +  L  L +L   CN  +                     +      +  + LE   
Sbjct: 507 LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF--YMGYNNLEEFP 564

Query: 224 YVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFG 283
                  A L     L +L        N +           L+    +  L    +    
Sbjct: 565 -----ASASLQKMVKLGLLDC----VHNKVRH---------LEAFGTNVKLTDLKLDYNQ 606

Query: 284 GKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMS--RVKRLGSEFY 341
            ++ P          +  L F    +   +P++    S+  +     S  ++   G    
Sbjct: 607 IEEIPEDFCAFT-DQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664

Query: 342 GNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLT 401
            +          T+  +  +  +++              +  + +   + +       L 
Sbjct: 665 CSMDDYKGINASTVTLSYNE-IQKFPTE----LFATGSPISTIIL-SNNLMTSIPENSLK 718

Query: 402 LLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKL 461
             D     N+ +   L  + +                +L   +S+           LP L
Sbjct: 719 PKD----GNYKNTYLLTTIDLRFN-------------KL-TSLSDDFRAT-----TLPYL 755

Query: 462 DELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHL 521
             +D+S           N         T    +     +L+                   
Sbjct: 756 SNMDVS----------YN---CFSSFPT----QPLNSSQLKAFGI-----------RHQR 787

Query: 522 ELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISI 570
           +    + L + P  + +  SL +++I +   +    E + P  L ++ I
Sbjct: 788 DAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLTPQ-LYILDI 834

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 1e-09
 Identities = 102/636 (16%), Positives = 185/636 (29%), Gaps = 181/636 (28%)

Query: 17  YFRMEYISEVNKQQSFSRNL--HHLSYIRGDYDGVKRFEDLY-------DIQHL------ 61
           +  M++  E  + Q   +++          ++D  K  +D+        +I H+      
Sbjct: 4   HHHMDF--ETGEHQYQYKDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDA 60

Query: 62  --RTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPD-----SIGDLSYL 114
              TL     L S+   + +  +  +L++          +L+S +       S+    Y+
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINY-------KFLMSPIKTEQRQPSMMTRMYI 113

Query: 115 RYLN-LSGTQIRTLPESV----------NKLYNL--------H--------TLLLEGCRE 147
              + L          +V            L  L                  + L+ C  
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 148 LKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSG------- 200
            K +C  M   I    LN  N +S E +   + KL       N+    D  S        
Sbjct: 174 YKVQCK-MDFKI--FWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 201 ----LRELKLLTHLCGTLNISKLENV--KYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLS 254
               LR L         L +  L NV      +A           K+L+   TR      
Sbjct: 230 IQAELRRLLKSKPYENCLLV--LLNVQNAKAWNAFNLSC------KILLT--TR------ 273

Query: 255 SREAQTEKGVLDMLKP----HRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDC--S 308
                  K V D L      H SL+          +       SL    +  + QD    
Sbjct: 274 ------FKQVTDFLSAATTTHISLDHH-SMTLTPDE-----VKSLLLKYLDCRPQDLPRE 321

Query: 309 MCTSMP-SVGQLPSL-----------KHLEVRGMSR-----VKRLGS----EFYGN---- 343
           + T+ P  +  +              KH+    ++      +  L      + +      
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 344 --DSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELH---IVRCSKLQGTLPT 398
              + IP   L  +       W + I      ++     + +LH   +V     + T+  
Sbjct: 382 PPSAHIPTILLSLI-------WFDVIK----SDVMVV--VNKLHKYSLVEKQPKESTISI 428

Query: 399 HLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKD--ISNQMFLGGPLK- 455
               L++       +  AL +  +D         + D     Y D    +   +G  LK 
Sbjct: 429 PSIYLELK--VKLENEYALHRSIVDHYNIPKTFDSDDL-IPPYLDQYFYS--HIGHHLKN 483

Query: 456 -LQLPKLDE-----LDIS-----IIIDGLSYIWQNETQLLQDIATLKRLK---IERCPKL 501
                ++       LD       I  D  +  W     +L  +  LK  K    +  PK 
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTA--WNASGSILNTLQQLKFYKPYICDNDPKY 541

Query: 502 QFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLL 537
           + L       F    ++E   LI  +  + L  +L+
Sbjct: 542 ERL-VNAILDF--LPKIEE-NLICSKYTDLLRIALM 573

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 9e-09
 Identities = 77/514 (14%), Positives = 158/514 (30%), Gaps = 171/514 (33%)

Query: 524 INCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIW------DSGALK 577
            +C+D++ +PKS+LS     E        ++   +AV  S    +  W      +    K
Sbjct: 33  FDCKDVQDMPKSILS----KE----EIDHIIMSKDAV--SGTLRL-FWTLLSKQEEMVQK 81

Query: 578 FLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGI--- 634
           F+ E   L  N            L++ I   Q  PS+    +Y     R     +     
Sbjct: 82  FVEEV--LRINYKF---------LMSPIKTEQRQPSMMT-RMYIEQRDRLYNDNQVFAKY 129

Query: 635 HSSRR--HTSLLECL-EIHSCPSL----------TCLISKNELRAALDYLVVGNLPQALK 681
           + SR   +  L + L E+    ++          T +         L Y V   +   + 
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD----VCLSYKVQCKMDFKIF 185

Query: 682 FLSIWHCSKLESIVERLDN-------------------KISLEVIEIVSCENLKML---- 718
           +L++ +C+  E+++E L                     K+ +  I+      L+ L    
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ----AELRRLLKSK 241

Query: 719 --PHGLHKL------WHLQEIDIQDCENLV---------------------SFPEGGLLS 749
              + L  L            ++  C+ L+                           L  
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 750 AKLKRLV--IYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDG 807
            ++K L+     C + + LP  +   +          P  L      +   ++     DG
Sbjct: 301 DEVKSLLLKYLDC-RPQDLPREVLTTN----------PRRL-----SIIAESIR----DG 340

Query: 808 MKIWKSLMQLGGFHRYTSLRRLAISGCD--------EDMVSFPLEDIRLGTTLPACLTQL 859
           +  W +   +    + T++   +++  +        + +  FP         +P  L  L
Sbjct: 341 LATWDNWKHV-NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-PSAH----IPTIL--L 392

Query: 860 EIFNFPNLERLSSSICDQNLTSLKLTNC-PKLKYFPEKGLPASLLRLEIKKCP------- 911
            +  F  ++     + ++ L    L    PK        +P+  L L+  K         
Sbjct: 393 SLIWFDVIKSDVMVVVNK-LHKYSLVEKQPKESTI---SIPSIYLELK-VKLENEYALHR 447

Query: 912 -LIE------KMCRQDIGP-------YWHLLIHI 931
            +++           D+ P       Y H+  H+
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.6 bits (147), Expect = 2e-09
 Identities = 90/553 (16%), Positives = 180/553 (32%), Gaps = 74/553 (13%)

Query: 79  RSILPRLLK-LQRLRVFSLRGYLISEV--PDSIGDLSYLRYLNLSGTQIRTLPESV-NKL 134
           R++       L++L++  L           ++  +L  LR L+L  ++I  L       L
Sbjct: 37  RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96

Query: 135 YNLHTLLLEGCR--ELKKKCADMGNLIKLHHL----NNSNTDSLEEMPLGIGKLTCL-LT 187
           ++L  L L  C   +   K     NL  L  L    N   +  L      +  L  +  +
Sbjct: 97  FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156

Query: 188 LCNF-VVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEW 246
                +V +     L+   L        ++    +V +       +      L++L +  
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN---MVLEILDV-- 211

Query: 247 TRSTNGLSSREAQTEKGVLDMLKPHR--SLEQFCISGFGGKKFPTWLGYSLF-----SNL 299
             S NG +          +   +            +GFG          + F     S++
Sbjct: 212 --SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI-KDPDQNTFAGLARSSV 268

Query: 300 VTLKFQDCSMCTSMPSV-GQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFA 358
             L      + +    V   L  LK L +      K     FYG D+      L+ L+ +
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN------LQVLNLS 322

Query: 359 EMQEWEEWIPHGCSQEIEGFPKLRELHIVRC--SKLQGTLPTHLTLLDILVVQN-----F 411
                   +    S    G PK+  + + +   + +Q      L  L  L +++      
Sbjct: 323 YNL-----LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377

Query: 412 TSLPALCKL-----RIDRCKKVVWRSTT-DCESQLYKDISNQMFLGGPLKLQLPKLDELD 465
             +P++  +     ++    K+   +          +++    FL     L++P L  L 
Sbjct: 378 HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFL-----LRVPHLQILI 432

Query: 466 ISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEE--DQWQFGLSFRLEHLEL 523
           ++   +  S    +  Q   +  +L++L +     LQ   E       F     L+ L L
Sbjct: 433 LN--QNRFSSCSGD--QTPSENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYL 487

Query: 524 INCQDLEKLPKSLLS-LSSLTEMRIHNCSSLVSFPEAVLPSQLRV-------ISIWDSGA 575
            +   L  LP  + S L++L  + +++   L       LP+ L +       +   +   
Sbjct: 488 NHNY-LNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISRNQLLAPNPDV 545

Query: 576 LKFLPEAWMLDNN 588
              L    +  N 
Sbjct: 546 FVSLSVLDITHNK 558

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.0 bits (130), Expect = 2e-07
 Identities = 69/525 (13%), Positives = 142/525 (27%), Gaps = 106/525 (20%)

Query: 481 TQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKL-PKSLLSL 539
           TQ+ Q + T +RL +     ++ +       F    +L+ LEL +      +  ++  +L
Sbjct: 17  TQVPQVLNTTERLLLSFN-YIRTVTASS---FPFLEQLQLLELGSQYTPLTIDKEAFRNL 72

Query: 540 SSLTEMRIHNCSSLVSFPEAVL--PSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIR 597
            +L  + + +   +             L  + ++  G    + +     N  +L  LD+ 
Sbjct: 73  PNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131

Query: 598 HCHLLTYIAGVQLP--PSLKQLEIYNCDNLRTLTAE--EGIHSSRRHTSLLECLEIHSCP 653
              + +           SLK ++  +   +  +     E +         L    ++S  
Sbjct: 132 KNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190

Query: 654 SLTCLISKNELRA-----------ALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKI 702
           S+      N  R                 + GN   A+     +       I+       
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250

Query: 703 SLEVIEIVSCENLKML----------------PHGLHKLWHLQEIDIQDCENLVSFPEGG 746
           +++  +  +   L                         L  L+ +++     +    +  
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADEA 309

Query: 747 LLSAK-LKRLVIYGCK-----------------------KLEALPEGM-HNLSSLQYL-- 779
                 L+ L +                            +  + +     L  LQ L  
Sbjct: 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369

Query: 780 ------TIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGG------FHRYTSLR 827
                 TI  +PS+      G     L  + +    I  S  +L          R   L+
Sbjct: 370 RDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQ 429

Query: 828 RLAISGCDEDMVSFP-------------LEDIRLGTTLPACLTQLEIFNFPNLERLSSSI 874
            L ++       S               L +  L       L         +L+ L  + 
Sbjct: 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489

Query: 875 CD------------QNLTSLKLTNCPKLKYFPEKGLPASLLRLEI 907
                           L  L L +  +L       LPA+L  L+I
Sbjct: 490 NYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDI 533

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.4 bits (147), Expect = 2e-09
 Identities = 56/410 (13%), Positives = 126/410 (30%), Gaps = 70/410 (17%)

Query: 490 LKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHN 549
           L +  I   P+ + +++       ++ +   +  ++   +  + K+++ L+ L +  + N
Sbjct: 161 LIKDCINSDPQQKSIKKS----SRITLKDTQIGQLSNN-ITFVSKAVMRLTKLRQFYMGN 215

Query: 550 CSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQ 609
                 F    +       +   +   K        DN   L  +++ +C  LT     +
Sbjct: 216 SP----FVAENICEAWENENSEYAQQYKTEDLK--WDNLKDLTDVEVYNCPNLT-----K 264

Query: 610 LPPSLKQLEIYNCDNLRTLTAEE--GIHSSRRHTSLLECLEIHSCPSLTCL-ISKNELRA 666
           LP       +     ++ +      GI   +         +      +  + I  N L+ 
Sbjct: 265 LPT-----FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319

Query: 667 ALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLW 726
                 +  + + L  L   +            N++  ++    S   L  L      L 
Sbjct: 320 FPVETSLQKMKK-LGMLECLY------------NQLEGKLPAFGSEIKLASL-----NLA 361

Query: 727 H--LQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPE--GMHNLSSLQYLTIG 782
           +  + EI    C               ++ L     K L+ +P      ++S +  +   
Sbjct: 362 YNQITEIPANFCGFTEQ----------VENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFS 410

Query: 783 G--VPSLLCFTEDGLFP-----TNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCD 835
              + S+     D L P      N+ S+ +   +I K   +L  F   + L  + + G  
Sbjct: 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL--FSTGSPLSSINLMGNM 468

Query: 836 EDMVSFPLEDIRLGTTLPACLTQLEIFNFPN--LERLSSSICDQNLTSLK 883
             +   P   ++           L   +     L +LS       L  L 
Sbjct: 469 --LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLV 516

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 55/326 (16%), Positives = 99/326 (30%), Gaps = 67/326 (20%)

Query: 517 RLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNC---------SSLVSFPEAVLPSQLRV 567
            L  +E+ NC +L KLP  L +L  +  + +                +  +A +  ++++
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 568 ISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRT 627
           I I  +  LK  P    L     L +L+  +  L   +        L  L +     +  
Sbjct: 310 IYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN-QITE 367

Query: 628 LTAEEGIHSSR------RH---TSLLECLEIHSCPSLTCL-ISKNELRAALDYLVVGNLP 677
           + A     + +       H     +    +  S   ++ +  S NE+ + +D      L 
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS-VDGKNFDPLD 426

Query: 678 QA------LKFL-------------SIWHCSKLE-------SIVERLDNKISLEVIEIVS 711
                   +  +                  S L         + E   N +  E     +
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486

Query: 712 CENLKML------------PHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVI-- 757
              L  +                  L +L  ID+    +   FP   L S+ LK   I  
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRN 545

Query: 758 ----YGCKKLEALPEGMHNLSSLQYL 779
                G + L   PEG+    SL  L
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQL 571

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 5e-07
 Identities = 74/594 (12%), Positives = 160/594 (26%), Gaps = 127/594 (21%)

Query: 107 SIGDLSYLRYLNLSGTQIR-TLPESVNKLYNLHTLLLEG----CRELKKKCADMGNLIKL 161
           S+     +  L+L G      +P+++ +L  L  L L        E       +   +  
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 162 HHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNIS--KL 219
                      +       +      + + +        +++   +T     +      +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 220 ENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQT--EKGVLDMLKPHRSLEQF 277
             V          +     L+   +      +   +       E    +  + +++ +  
Sbjct: 196 TFV-------SKAVMRLTKLRQFYM----GNSPFVAENICEAWENENSEYAQQYKTED-- 242

Query: 278 CISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLEVRG--MSRVK 334
                        L +    +L  ++  +C   T +P  +  LP ++ + V        +
Sbjct: 243 -------------LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289

Query: 335 RLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQG 394
           +L  ++           ++ ++          +       ++   KL  L  +   +L+G
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE----TSLQKMKKLGMLECLYN-QLEG 344

Query: 395 TLPT--HLTLLDILVVQN--FTSLPA--------LCKLRIDRCKKVVWRSTTDCESQLYK 442
            LP       L  L +     T +PA        +  L                  +L K
Sbjct: 345 KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-------------KL-K 390

Query: 443 DISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQ 502
            I N           +  +  +D S           NE      I ++     +      
Sbjct: 391 YIPNIFDAK-----SVSVMSAIDFS----------YNE------IGSVDGKNFDPLDP-- 427

Query: 503 FLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLS-LSSLTEMRIHNCSSLVSFPEAVL 561
                          +  + L N Q + K PK L S  S L+ + +     L   P+  L
Sbjct: 428 --------TPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSL 477

Query: 562 PSQLRVISIWDSGALKFL----------PEAWMLDNNSSLEILDIRHCHLLTYIAGVQLP 611
             +           L  +           + +       L  +D+ +          + P
Sbjct: 478 KDENENFKNTYL--LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF------SKFP 529

Query: 612 PSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCL-ISKNEL 664
                 +  N   L+         +    T       I  CPSLT L I  N++
Sbjct: 530 T-----QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 7e-07
 Identities = 71/716 (9%), Positives = 175/716 (24%), Gaps = 197/716 (27%)

Query: 85  LLKLQRLRVFSLRG-YLISEVPDSIGDLSYLRYLNLSGTQIR-----TLPESVNKLYNLH 138
           L    R+   SL G      VPD+IG L+ L  L L     +       P+ ++   +  
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 139 TLLLEGCRELKKKCADMGNLI--KLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKD 196
                     K             L     ++    + +            +        
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQI-------- 188

Query: 197 SGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSR 256
                     +T +     + +L                   L+   +      +   + 
Sbjct: 189 GQLSNN----ITFVSKA--VMRL-----------------TKLRQFYM----GNSPFVAE 221

Query: 257 EAQT--EKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP 314
                 E    +  + +++ +               L +    +L  ++  +C   T +P
Sbjct: 222 NICEAWENENSEYAQQYKTED---------------LKWDNLKDLTDVEVYNCPNLTKLP 266

Query: 315 -SVGQLPSLKHLEVRG--MSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGC 371
             +  LP ++ + V        ++L  ++           ++ ++          +    
Sbjct: 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE--- 323

Query: 372 SQEIEGFPKLRELHIVRCSKLQGTLPT--HLTLLDILVVQN--FTSLPALCKLRIDRCKK 427
              ++   KL  L  +   +L+G LP       L  L +     T +PA           
Sbjct: 324 -TSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAYNQITEIPA----------- 370

Query: 428 VVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDI 487
                          +                +++ L  +           N+   L+ I
Sbjct: 371 ---------------NFCG----------FTEQVENLSFA----------HNK---LKYI 392

Query: 488 ATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEH--LELINCQDLEKLPKSLLSLSSLTEM 545
                   +    +  +               +  +  ++ ++ + L  +     +++ +
Sbjct: 393 P--NIFDAKSVSVMSAI------------DFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438

Query: 546 RIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYI 605
            + N   +  FP+ +                            S L  +++    L    
Sbjct: 439 NLSNN-QISKFPKEL------------------------FSTGSPLSSINLMGNMLTEIP 473

Query: 606 AGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCL-ISKNEL 664
                  +       N   L ++          + T L +     + P L  + +S N  
Sbjct: 474 KNSLKDEN---ENFKNTYLLTSIDL-----RFNKLTKLSDDFRATTLPYLVGIDLSYNSF 525

Query: 665 RAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENL-KMLPHGLH 723
                       P         + S L+           +            +  P G+ 
Sbjct: 526 S---------KFPT-----QPLNSSTLKG--------FGIRNQRDAQGNRTLREWPEGIT 563

Query: 724 KLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYL 779
               L ++ I    ++    E   ++  +  L I     +      +         
Sbjct: 564 LCPSLTQLQIGSN-DIRKVNEK--ITPNISVLDIKDNPNISIDLSYVCPYIEAGMY 616

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.5 bits (116), Expect = 1e-05
 Identities = 18/179 (10%), Positives = 46/179 (25%), Gaps = 29/179 (16%)

Query: 61  LRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLR---GYLISEVPDSIGDLSYLRYL 117
           +   +          +  ++ +    +     +             +  S         +
Sbjct: 129 ISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQI 188

Query: 118 NLSGTQIRTLPESVNKLYNLHTL-------------------LLEGCRELKKKCADMGNL 158
                 I  + ++V +L  L                        E  ++ K +     NL
Sbjct: 189 GQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL 248

Query: 159 IKLHHLNNSNTDSLEEMPLGIGKLTCLLTL----CNFVVG---KDSGSGLRELKLLTHL 210
             L  +   N  +L ++P  +  L  +  +       + G   KD    L +  +   +
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 2e-05
 Identities = 49/361 (13%), Positives = 99/361 (27%), Gaps = 69/361 (19%)

Query: 585 LDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLL 644
           L++N  +  L +        +     P ++ QL       L  L        S       
Sbjct: 77  LNSNGRVTGLSLEGFGASGRV-----PDAIGQLT-----ELEVL-----ALGSHGEKVNE 121

Query: 645 ECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQA----LKFLSIWHCSKLESIVERLDN 700
                    +      K ++R       V   P+     L    I    + +SI +    
Sbjct: 122 RLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181

Query: 701 KISLEVIEIVSCENLKMLPHGLHKLWHLQEIDI-------------------QDCENLVS 741
            +    I      N+  +   + +L  L++  +                   +  +   +
Sbjct: 182 TLKDTQI-GQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240

Query: 742 FP-EGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYL--------TIGGVPSLLCFTE 792
              +   L   L  + +Y C  L  LP  +  L  +Q +        +   +        
Sbjct: 241 EDLKWDNLK-DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299

Query: 793 DGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTL 852
           D      +  + I    + K+        +   L  L                 +L   L
Sbjct: 300 DAPVGEKIQIIYIGYNNL-KTFPVETSLQKMKKLGMLECLYN------------QLEGKL 346

Query: 853 PA--CLTQLEIFNFPN--LERLSSSICD--QNLTSLKLTNCPKLKYFPEKGLPASLLRLE 906
           PA     +L   N     +  + ++ C   + + +L   +  KLKY P      S+  + 
Sbjct: 347 PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMS 405

Query: 907 I 907
            
Sbjct: 406 A 406

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 52/418 (12%), Positives = 109/418 (26%), Gaps = 80/418 (19%)

Query: 517 RLEHLELINCQDLEKLPKSLLSLSSLTEMRIHN----CSSLVSFPEAVLP-SQLRVISIW 571
           R+  L L       ++P ++  L+ L  + + +     +  +  P+ +            
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 572 DSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYI-AGVQLPPSLKQL------------E 618
                K   +    ++ S L    I        I    ++     Q+             
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201

Query: 619 IYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQ 678
           +     LR          +       E                         L   NL  
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-----------LKWDNLKD 250

Query: 679 ALKFLSIWHCSKLESI---------VERLD---NKISLEVIEIVSCENLKMLPHGLHKLW 726
            L  + +++C  L  +         ++ ++   N+           + L   P       
Sbjct: 251 -LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAP----VGE 305

Query: 727 HLQEIDIQDCENLVSFPEGGLLS--AKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIG-- 782
            +Q I I    NL +FP    L    KL  L      +LE       +   L  L +   
Sbjct: 306 KIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAYN 363

Query: 783 ---GVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMV 839
               +P+  C      F   + +L     K+ K +  +      + +  +  S       
Sbjct: 364 QITEIPANFCG-----FTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYN----- 412

Query: 840 SFPLEDIRLGTTLPACLTQL--EIFNFPNLERLSSSICDQNLTSL---KLTNCPKLKY 892
                   +G+        L    F   N+  +  ++ +  ++       +    L  
Sbjct: 413 -------EIGSVDGKNFDPLDPTPFKGINVSSI--NLSNNQISKFPKELFSTGSPLSS 461

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 58.0 bits (140), Expect = 1e-08
 Identities = 79/572 (13%), Positives = 156/572 (27%), Gaps = 140/572 (24%)

Query: 301 TLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPI---------PFPC 351
            +   +C   +    + + P ++ +E++G            G    +          +  
Sbjct: 47  KVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTW 106

Query: 352 LETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNF 411
           LE +    M   ++          + F   + L +  C        +   L  I      
Sbjct: 107 LEEIRLKRMVVTDD----CLELIAKSFKNFKVLVLSSCEGF-----STDGLAAIA----- 152

Query: 412 TSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIID 471
            +   L +L +                    D+S               L  L+IS +  
Sbjct: 153 ATCRNLKELDLRESDVD--------------DVSGHWLSH--FPDTYTSLVSLNISCLAS 196

Query: 472 GLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEK 531
            +S+            + L+RL + RCP L+                  L+L     LEK
Sbjct: 197 EVSF------------SALERL-VTRCPNLK-----------------SLKLNRAVPLEK 226

Query: 532 LPKSLLSLSSLTEMRIHNCSSLVS-------FPEAVLPSQLRVISIWDSGALKFLPEAWM 584
           L   L     L E+     ++ V                +LR +S +      +LP   +
Sbjct: 227 LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA--V 284

Query: 585 LDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTA-----EEGIHSSRR 639
               S L  L++ +  + +          L +L +  C  L+ L       + G+     
Sbjct: 285 YSVCSRLTTLNLSYATVQS--------YDLVKL-LCQCPKLQRLWVLDYIEDAGLEVLAS 335

Query: 640 HTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLD 699
               L  L +          +       L  +                C KLES++    
Sbjct: 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS-------------MGCPKLESVLYFCR 382

Query: 700 NKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSA--------- 750
                     ++   L  +         +    +   E                      
Sbjct: 383 Q---------MTNAALITIARNRPN---MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH 430

Query: 751 --KLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFP-----TNLHSL 803
              L+RL + G    +           ++ L++         ++ G+        +L  L
Sbjct: 431 CKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG----DSDLGMHHVLSGCDSLRKL 486

Query: 804 EIDGMKIW-KSLMQLGGFHRYTSLRRLAISGC 834
           EI       K+L+      +  ++R L +S C
Sbjct: 487 EIRDCPFGDKALLAN--ASKLETMRSLWMSSC 516

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 74/438 (16%), Positives = 134/438 (30%), Gaps = 86/438 (19%)

Query: 517 RLEHLELINCQ----DLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPS---QLRVIS 569
            LE + L         LE + KS  +   L    + +C    +   A + +    L+ + 
Sbjct: 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLV---LSSCEGFSTDGLAAIAATCRNLKELD 162

Query: 570 IWDSGALKFLPEAW--MLDNNSSLEILDIRHCHLLTYIAGVQL----PPSLKQLEIYNCD 623
           + +S              D  +SL  L+I         + ++      P+LK L++    
Sbjct: 163 LRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222

Query: 624 NLRTLTAEEGIHSSRRHTSLLECLEIH-------------SCPSLTCL-----ISKNELR 665
            L  L                                    C  L CL          L 
Sbjct: 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP 282

Query: 666 AALDYLVVGNLPQALKFLSIWHCSK----LESIVERLDNKISLEVIEIVSCENLKMLPHG 721
           A             L  L++ + +     L  ++ +      L V++ +    L++L   
Sbjct: 283 AVYSVC------SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST 336

Query: 722 LHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLS--SLQYL 779
              L   +E+ +   E  V  P   L    L  +   GC KLE++      ++  +L  +
Sbjct: 337 CKDL---RELRVFPSEPFVMEPNVALTEQGLVSVS-MGCPKLESVLYFCRQMTNAALITI 392

Query: 780 TIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMV 839
                P++  F    + P     L ++ + I      +        LRRL++SG   D V
Sbjct: 393 ARN-RPNMTRFRLCIIEPKAPDYLTLEPLDI--GFGAIV--EHCKDLRRLSLSGLLTDKV 447

Query: 840 SFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSICDQNLTSLK--LTNCPKLKYFPEKG 897
              +                       +E LS +    +   +   L+ C  L+      
Sbjct: 448 FEYI-----------------GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK----- 485

Query: 898 LPASLLRLEIKKCPLIEK 915
                  LEI+ CP  +K
Sbjct: 486 -------LEIRDCPFGDK 496

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 12/132 (9%), Positives = 35/132 (26%), Gaps = 1/132 (0%)

Query: 80  SILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHT 139
             +   +   +L+   L    ++ +       + + +++L   ++  + +++    NL  
Sbjct: 182 YDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241

Query: 140 LLLEGCR-ELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSG 198
             L G                ++  +       L         +  L     +       
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

Query: 199 SGLRELKLLTHL 210
                L  L H 
Sbjct: 302 PFADRLIALGHH 313

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 2/98 (2%)

Query: 79  RSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIR--TLPESVNKLYN 136
             + P       +   SLR   +  +  ++     L + +L G      TL +  +K   
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 137 LHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEE 174
           + T+  +  ++L  +  +   +  L H      + L  
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.9 bits (138), Expect = 2e-08
 Identities = 79/413 (19%), Positives = 134/413 (32%), Gaps = 73/413 (17%)

Query: 523 LINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEA 582
           L +  +L ++P    ++ S TE          + P      +   +S       +   E 
Sbjct: 17  LRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHEL 76

Query: 583 WMLDNN--------SSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGI 634
            + +            LE L      L       +LP   + L+    DN       +  
Sbjct: 77  ELNNLGLSSLPELPPHLESLVASCNSL------TELPELPQSLKSLLVDNNNLKALSDLP 130

Query: 635 HSSR----RHTSLLECLEIHSCPSLTCL-ISKNELRAALDYLVVGNLPQALKFLSIWHCS 689
                    +  L +  E+ +   L  + +  N L+       + +LP +L+F++  +  
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK------LPDLPPSLEFIAAGNN- 183

Query: 690 KLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLS 749
           +LE + E L N   L  I      +LK LP        L+ I   +   L   PE   L 
Sbjct: 184 QLEELPE-LQNLPFLTAIYA-DNNSLKKLPDLPLS---LESIVAGNN-ILEELPELQNLP 237

Query: 750 AKLKRLVIYGCKKLEALPEGMHNLSSLQ--YLTIGGVPSLLC-----------FTEDGLF 796
             L  +       L+ LP+   +L +L      +  +P L             F+     
Sbjct: 238 -FLTTIYADNN-LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL 295

Query: 797 PTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACL 856
           P NL+ L     +I              SL  L +S              +L   LPA  
Sbjct: 296 PPNLYYLNASSNEIRSLCDLP------PSLEELNVSNN------------KL-IELPALP 336

Query: 857 TQLEIFNFPN--LERLSSSICDQNLTSLKLTNCPKLKYFPEKGLPASLLRLEI 907
            +LE        L  +      QNL  L +     L+ FP+  +P S+  L +
Sbjct: 337 PRLERLIASFNHLAEVPELP--QNLKQLHVEYN-PLREFPD--IPESVEDLRM 384

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.8 bits (117), Expect = 5e-06
 Identities = 30/140 (21%), Positives = 45/140 (32%), Gaps = 14/140 (10%)

Query: 80  SILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHT 139
             LP L  L  L         + ++PD       L  +      +  LPE +  L  L T
Sbjct: 186 EELPELQNLPFLTAIYADNNSLKKLPDLPLS---LESIVAGNNILEELPE-LQNLPFLTT 241

Query: 140 LLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVG-KDSG 198
           +  +    LK       +L  L+  +N     L ++P     LT L    N   G  +  
Sbjct: 242 IYADNNL-LKTLPDLPPSLEALNVRDN----YLTDLPELPQSLTFLDVSENIFSGLSELP 296

Query: 199 SGLRELKL----LTHLCGTL 214
             L  L      +  LC   
Sbjct: 297 PNLYYLNASSNEIRSLCDLP 316

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 94/575 (16%), Positives = 175/575 (30%), Gaps = 143/575 (24%)

Query: 81  ILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQI-RTLPESVNKLYNLHT 139
           I PR +    L+        ++E+P    ++        + ++  R  P    +   +  
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 140 LLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGS 199
             L  C +            + H L  +N   L  +P     L  L+  CN +   +   
Sbjct: 63  SRLRDCLDR-----------QAHELELNNL-GLSSLPELPPHLESLVASCNSL--TELPE 108

Query: 200 GLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQ 259
             + LK L       N+  L ++                L+ L +    S N L      
Sbjct: 109 LPQSLKSLLVDN--NNLKALSDL-------------PPLLEYLGV----SNNQLEK---- 145

Query: 260 TEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQL 319
                L  L+    L+   +     KK P         +L  +   +  +   +P +  L
Sbjct: 146 -----LPELQNSSFLKIIDVDNNSLKKLPDLPP-----SLEFIAAGNNQL-EELPELQNL 194

Query: 320 PSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFP 379
           P L  +     + +K+L         P     LE++        E  +P     E++  P
Sbjct: 195 PFLTAIYADN-NSLKKL---------PDLPLSLESIVAGNNILEE--LP-----ELQNLP 237

Query: 380 KLRELHIVRCSKLQGTLPTHLTLLDILVVQN--FTSLPALCKLRIDRCKKVVWRSTTDCE 437
            L  ++    + L+ TLP     L+ L V++   T LP L +                  
Sbjct: 238 FLTTIYA-DNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQ------------------ 277

Query: 438 SQLYKDISNQMFLGGPLKLQLPKLDELDISI-----IIDGLSYIWQNE---TQLLQDIAT 489
                               L  LD  +        +   L Y+  +      L     +
Sbjct: 278 -------------------SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPS 318

Query: 490 LKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHN 549
           L+ L +    KL  L            RLE L       L ++P+      +L ++ +  
Sbjct: 319 LEELNVSNN-KLIELPAL-------PPRLERLIASFNH-LAEVPE---LPQNLKQLHVEY 366

Query: 550 CSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQ 609
              L  FP+  +P  +  + +  +  L  +PE        +L+ L +    L        
Sbjct: 367 N-PLREFPD--IPESVEDLRM--NSHLAEVPE-----LPQNLKQLHVETNPLRE------ 410

Query: 610 LPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLL 644
            P   + +E    ++ R +   E  H +       
Sbjct: 411 FPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDD 445

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 69/277 (24%), Positives = 98/277 (35%), Gaps = 46/277 (16%)

Query: 518 LEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALK 577
           LE +   N Q LE+LP  L +L  LT +   N S L   P+  LP  L  I   ++  L+
Sbjct: 175 LEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNS-LKKLPD--LPLSLESIVAGNN-ILE 228

Query: 578 FLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSS 637
            LPE   L N   L  +   +  L        LP     LE  N  +       E   S 
Sbjct: 229 ELPE---LQNLPFLTTIYADNNLL------KTLPDLPPSLEALNVRDNYLTDLPELPQSL 279

Query: 638 RR-HTSLLECLEIHSCP-SLTCL-ISKNELRA------ALDYLVVGN--------LPQAL 680
                S      +   P +L  L  S NE+R+      +L+ L V N        LP  L
Sbjct: 280 TFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRL 339

Query: 681 KFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLV 740
           + L       L  + E   N   L V        L+  P     +  L+        +L 
Sbjct: 340 ERLIASFN-HLAEVPELPQNLKQLHV----EYNPLREFPDIPESVEDLRM-----NSHLA 389

Query: 741 SFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQ 777
             PE   L   LK+L +     L   P+   ++  L+
Sbjct: 390 EVPE---LPQNLKQLHVETNP-LREFPDIPESVEDLR 422

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 29/125 (23%), Positives = 44/125 (35%), Gaps = 19/125 (15%)

Query: 80  SILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLY---- 135
             LP L  L  L        L+  +PD    L  L   +   T +  LP+S+  L     
Sbjct: 228 EELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 287

Query: 136 ----------NLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCL 185
                     NL+ L       ++  C    +L +L+  NN     L E+P    +L  L
Sbjct: 288 IFSGLSELPPNLYYLNASSNE-IRSLCDLPPSLEELNVSNN----KLIELPALPPRLERL 342

Query: 186 LTLCN 190
           +   N
Sbjct: 343 IASFN 347

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 18/148 (12%), Positives = 46/148 (31%), Gaps = 4/148 (2%)

Query: 80  SILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHT 139
             +   +   +L+   L    ++ +       + + +++L   ++  + +++    NL  
Sbjct: 182 YDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241

Query: 140 LLLEG----CRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGK 195
             L G    C  L+   +    +  +            E    +  L      C   +  
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

Query: 196 DSGSGLRELKLLTHLCGTLNISKLENVK 223
                L  LK   H   +   S+ E ++
Sbjct: 302 PFADRLIALKRKEHALLSGQGSETERLE 329

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.7 bits (137), Expect = 3e-08
 Identities = 76/546 (13%), Positives = 154/546 (28%), Gaps = 118/546 (21%)

Query: 85  LLKLQRLRVFSLRGYLISEVPDSI-GDLSYLRYLNLSGTQIRTLPESV-NKLYNLHTLLL 142
           L     L+V  L+   I+ +       L  L +L+LS   + +L  S    L +L  L L
Sbjct: 46  LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105

Query: 143 EGCRELKK--KCADMGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCL--LTLCNFVVGKDS 197
            G    +     +   NL  L  L   N ++  E+       LT L  L +    +    
Sbjct: 106 MGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164

Query: 198 GSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSRE 257
              L+ ++ + HL  TL++S+   +       E   D   +++ L L             
Sbjct: 165 SQSLKSIRDIHHL--TLHLSESAFLL------EIFADILSSVRYLELR------------ 204

Query: 258 AQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVG 317
                          +L +F  S     +  + +    F   V        +   +  + 
Sbjct: 205 -------------DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251

Query: 318 QLPSLKHLEVR--GMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEI 375
           +L  ++  +    G+       S+       +    +  LH  +   +            
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY--DLSTV---Y 306

Query: 376 EGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTD 435
               K++ + +             + L+          L +L  L +             
Sbjct: 307 SLLEKVKRITVENS---------KVFLVPCSF---SQHLKSLEFLDLSENL--------- 345

Query: 436 CESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKI 495
                   +  +       K   P L  L +S          QN                
Sbjct: 346 --------MVEEYLKNSACKGAWPSLQTLVLS----------QN---------------- 371

Query: 496 ERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVS 555
                L+ +++  +    L   L  L++        +P S      +  + + +   +  
Sbjct: 372 ----HLRSMQKTGEILLTLK-NLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSST-GIRV 424

Query: 556 FPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLK 615
               +  + L V+ +  +  L              L+ L I     L  +    L P L 
Sbjct: 425 VKTCIPQT-LEVLDV-SNNNLDSFSL-----FLPRLQELYISRNK-LKTLPDASLFPVLL 476

Query: 616 QLEIYN 621
            ++I  
Sbjct: 477 VMKISR 482

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 69/415 (16%), Positives = 143/415 (34%), Gaps = 41/415 (9%)

Query: 517 RLEHLELINCQDLEKLPK-SLLSLSSLTEMRIHNCSSLVSFPEAVLP--SQLRVISIWDS 573
            L+ L L + + +  +   +  SL SL  + + +   L S   +     S L+ +++   
Sbjct: 51  NLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNL-MG 107

Query: 574 GALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLP--PSLKQLEIYNCDNLRTLTAE 631
              + L    +  N ++L+ L I +    + I  +      SL +LEI    +LR   ++
Sbjct: 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQ 166

Query: 632 EGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKL 691
                   H   L   E      +   I  +     + YL + +   A    S     ++
Sbjct: 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSS-----VRYLELRDTNLARFQFSPLPVDEV 221

Query: 692 ESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQ-------DCENLVSFPE 744
            S +++L  + S  V+   S   L  L   + +L  ++  D         +        E
Sbjct: 222 SSPMKKLAFRGS--VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279

Query: 745 GGLLSA-KLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGG--VPSLLCFTEDGLFPTNLH 801
            G +    ++RL I        L      L  ++ +T+    V  + C     L   +L 
Sbjct: 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL--KSLE 337

Query: 802 SLEIDGMKI-WKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLE 860
            L++    +  + L        + SL+ L +S          L  ++    +   L  L 
Sbjct: 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-------LRSMQKTGEILLTLKNLT 390

Query: 861 IFNFPN--LERLSSSICD-QNLTSLKLTNCPKLKYFPEKGLPASLLRLEIKKCPL 912
             +        +  S    + +  L L++   ++      +P +L  L++    L
Sbjct: 391 SLDISRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKT-CIPQTLEVLDVSNNNL 443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 54.9 bits (132), Expect = 1e-07
 Identities = 86/620 (13%), Positives = 174/620 (28%), Gaps = 150/620 (24%)

Query: 301 TLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLG---SEFYGNDSPI------PFPC 351
            +    C   T      + P+L+ L+++G  R          + G  +P           
Sbjct: 54  HVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ 113

Query: 352 LETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNF 411
           L+++HF  M   +  +             L  L + +CS       T   LL I+     
Sbjct: 114 LKSVHFRRMIVSDLDLDRLAKA---RADDLETLKLDKCSGF-----TTDGLLSIV----- 160

Query: 412 TSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIID 471
           T    +  L ++                                L++      + + I  
Sbjct: 161 THCRKIKTLLMEESSFSEKD-----------GKWLHELAQHNTSLEVLNFYMTEFAKISP 209

Query: 472 -GLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLE 530
             L  I +N   L         +K+     L     E    F  +  LE     +  +  
Sbjct: 210 KDLETIARNCRSL-------VSVKVGDFEIL-----ELVGFFKAAANLEEFCGGSLNEDI 257

Query: 531 KLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSS 590
            +P+  ++L    ++     S                  +  +      P        + 
Sbjct: 258 GMPEKYMNLVFPRKLCRLGLSY-----------------MGPNEMPILFP------FAAQ 294

Query: 591 LEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIH 650
           +  LD+ +  L T      L      LE+    N+     + G+    ++   L+ L I 
Sbjct: 295 IRKLDLLYALLETE-DHCTLIQKCPNLEVLETRNVIG---DRGLEVLAQYCKQLKRLRIE 350

Query: 651 SCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIV 710
                  +  +  L        V    + L  L+   C +LE +               V
Sbjct: 351 RGADEQGMEDEEGL--------VSQ--RGLIALAQ-GCQELEYMA--------------V 385

Query: 711 SCEN-----LKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSA------KLKRLVIYG 759
              +     L+ +   L  L   + + +   E +   P    + +      KL+R   Y 
Sbjct: 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445

Query: 760 CKKL---EALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFP-----TNLHSLEIDGMKI- 810
            +       L        +++++ +G V      +++GL        NL  LE+ G    
Sbjct: 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVG----ESDEGLMEFSRGCPNLQKLEMRGCCFS 501

Query: 811 WKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERL 870
            +++       +  SLR L + G         +    L                     +
Sbjct: 502 ERAIAAAV--TKLPSLRYLWVQGY-----RASMTGQDL---------------------M 533

Query: 871 SSSICDQNLTSLKLTNCPKL 890
             +    N+  +     P++
Sbjct: 534 QMARPYWNIELIPSRRVPEV 553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.6 bits (118), Expect = 4e-06
 Identities = 51/429 (11%), Positives = 122/429 (28%), Gaps = 77/429 (17%)

Query: 490 LKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHN 549
           L+ LK+++C               +      ++ +  ++     K    L  L +    +
Sbjct: 140 LETLKLDKCSGF-----TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ----H 190

Query: 550 CSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQ 609
            +SL    E +         I     L+ +       N  SL  + +    +L  +   +
Sbjct: 191 NTSL----EVLNFYMTEFAKISPKD-LETI-----ARNCRSLVSVKVGDFEILELVGFFK 240

Query: 610 LPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIH---------SCPSLTCL-I 659
              +L++    + +    +  +       R    L    +              +  L +
Sbjct: 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDL 300

Query: 660 SKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLP 719
               L       ++   P  L+ L   +      +         L+ + I    + + + 
Sbjct: 301 LYALLETEDHCTLIQKCPN-LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGME 359

Query: 720 HGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKK----LEALPEGMHNLSS 775
                +             L++  +G     +L+ + +Y        LE++   + NL  
Sbjct: 360 DEEGLVSQ---------RGLIALAQGC---QELEYMAVYVSDITNESLESIGTYLKNLCD 407

Query: 776 LQYLTIGGVPSLLCFTEDGLFP------TNLHSLEIDGMKIW---KSLMQLGGFHRYTSL 826
            + + +     +     D            L        +       L  +G +    ++
Sbjct: 408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP--NV 465

Query: 827 RRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLS---SSICDQNLTSLK 883
           R + +    E        D  L      C         PNL++L        ++ + +  
Sbjct: 466 RWMLLGYVGES-------DEGLMEFSRGC---------PNLQKLEMRGCCFSERAIAAA- 508

Query: 884 LTNCPKLKY 892
           +T  P L+Y
Sbjct: 509 VTKLPSLRY 517

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.0 bits (130), Expect = 2e-07
 Identities = 91/533 (17%), Positives = 170/533 (31%), Gaps = 72/533 (13%)

Query: 85  LLKLQRLRVFSLRGYLISEVP-DSIGDLSYLRYLNLSGTQIRTLPESV-NKLYNLHTLLL 142
                 L+V  L    I  +   +   LS+L  L L+G  I++L     + L +L  L+ 
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 143 EGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLR 202
                         NL  L +    +  +L+E+ +    +                    
Sbjct: 108 VET-----------NLASLENFPIGHLKTLKELNVAHNLIQSF----------KLPEYFS 146

Query: 203 ELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEK 262
            L  L HL   L+ +K++++          L     + +L L    S N ++      + 
Sbjct: 147 NLTNLEHL--DLSSNKIQSIY------CTDLRVLHQMPLLNLSLDLSLNPMNF----IQP 194

Query: 263 GVLDMLKPHR-SLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQLPS 321
           G    ++ H+ +L     S    K     L       LV  +F++            L  
Sbjct: 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK-SALEG 253

Query: 322 LKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKL 381
           L +L +           ++Y +D    F CL  +    +      +     ++       
Sbjct: 254 LCNLTIEEFRLAY---LDYYLDDIIDLFNCLTNVSSFSLVS----VTIERVKDFSYNFGW 306

Query: 382 RELHIVRCS--KLQGTLPTHLTLLD-----ILVVQNFTSLPALCKLRIDRCKKVVWRSTT 434
           + L +V C   +        L  L           +   LP+L  L + R         +
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 435 DCESQLYK----DIS-NQMFLGGPLKLQLPKLDELDISIIID-GLSYIWQNETQLLQDIA 488
             +         D+S N +       L L +L+ LD        L  +   E  +   + 
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ---HSNLKQMS--EFSVFLSLR 421

Query: 489 TLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLS-LSSLTEMRI 547
            L  L I      +         F     LE L++      E     + + L +LT + +
Sbjct: 422 NLIYLDISHT-HTRVAFNGI---FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 548 HNCSSLVSFPEAVLP--SQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRH 598
             C  L           S L+V+++  S  LK +P+  + D  +SL+ + +  
Sbjct: 478 SQC-QLEQLSPTAFNSLSSLQVLNM-ASNQLKSVPD-GIFDRLTSLQKIWLHT 527

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 61/385 (15%), Positives = 114/385 (29%), Gaps = 69/385 (17%)

Query: 518 LEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALK 577
                    +       S   L++LT +  HN S +         + L  +    +  + 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSS-ITDMTGIEKLTGLTKLICTSNN-IT 77

Query: 578 FLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSS 637
            L     L  N++L  L      L               L++     L  L         
Sbjct: 78  TLD----LSQNTNLTYLACDSNKL-------------TNLDVTPLTKLTYLNC------- 113

Query: 638 RRHTSLLECLEIHSCPSLTCL-ISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVE 696
              T+ L  L++   P LT L  ++N L      + V +  Q L  L      K+  +  
Sbjct: 114 --DTNKLTKLDVSQNPLLTYLNCARNTLTE----IDVSHNTQ-LTELDCHLNKKITKLD- 165

Query: 697 RLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLV 756
            +  +  L  ++      +  L   + +   L  ++     N+           +L  L 
Sbjct: 166 -VTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTN-NITKLDLNQN--IQLTFLD 218

Query: 757 IYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKI------ 810
               K L  +      L+ L Y      P L       L  + L +L      +      
Sbjct: 219 CSSNK-LTEIDVT--PLTQLTYFDCSVNP-LTELDVSTL--SKLTTLHCIQTDLLEIDLT 272

Query: 811 -WKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLER 869
               L+          ++ L ++   +      L  +         +T+L++   P L  
Sbjct: 273 HNTQLIYFQ-AEGCRKIKELDVTHNTQ------LYLLDCQAAG---ITELDLSQNPKLVY 322

Query: 870 LSSSICDQN-LTSLKLTNCPKLKYF 893
           L     +   LT L +++  KLK  
Sbjct: 323 LY---LNNTELTELDVSHNTKLKSL 344

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.1 bits (128), Expect = 3e-07
 Identities = 91/571 (15%), Positives = 163/571 (28%), Gaps = 106/571 (18%)

Query: 79  RSILPRLLK-LQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTLPESV-NKLY 135
           + +          L+   L    I  +   +   L +L  L L+G  I++      + L 
Sbjct: 45  KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104

Query: 136 NLHTLLLEGC--RELKKKCADMGNLIKLHHLN-NSNTDSLEEMPLG--IGKLTCL--LTL 188
           +L  L+        L+     +G LI L  LN   N   +    L      LT L  + L
Sbjct: 105 SLENLVAVETKLASLESFP--IGQLITLKKLNVAHN--FIHSCKLPAYFSNLTNLVHVDL 160

Query: 189 CNFVVGKDSGSGLRELKLLTHLCGTLNISK--------------------LENVKYVGDA 228
               +   + + L+ L+    +  +L++S                     L       + 
Sbjct: 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNI 220

Query: 229 MEAQLDGKKNLKVLMLEWTR--STNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKK 286
           M+  L     L V  L          L   E    +G+ D+      L           K
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280

Query: 287 FPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSP 346
           F         +N+  +     S+   +  V +    + L +                   
Sbjct: 281 F------HCLANVSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQ---------LKQFPT 324

Query: 347 IPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHI-------VRCSKLQGTLPTH 399
           +  P L++L     +          S +    P L  L +         C          
Sbjct: 325 LDLPFLKSLTLTMNKGSI-------SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 400 LTLLD------ILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGP 453
           L  LD      I++  NF  L  L  L                 S L +      FL   
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQ-------------HSTLKRVTEFSAFLS-- 422

Query: 454 LKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFG 513
               L KL  LDIS      +    +   +   + +L  LK+                F 
Sbjct: 423 ----LEKLLYLDISY-----TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN---VFA 470

Query: 514 LSFRLEHLELINCQDLEKLPKSLLS-LSSLTEMRIHNCSSLVSFPEAVLP--SQLRVISI 570
            +  L  L+L  CQ LE++   +   L  L  + + +  +L+    +       L  +  
Sbjct: 471 NTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDC 528

Query: 571 WDSGALKFLPEAWMLDNNSSLEILDIRHCHL 601
                ++      +     SL   ++ +  +
Sbjct: 529 -SFNRIETSKGI-LQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 9e-05
 Identities = 53/276 (19%), Positives = 93/276 (33%), Gaps = 34/276 (12%)

Query: 515 SFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSG 574
            F+ + L +I CQ L++ P   L L  L  + +      +SF +  LPS L  + +  S 
Sbjct: 306 HFKWQSLSIIRCQ-LKQFPT--LDLPFLKSLTLTMNKGSISFKKVALPS-LSYLDL--SR 359

Query: 575 -ALKFLPE-AWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEE 632
            AL F    ++     +SL  LD+     +   A       L+ L+  +           
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS---------- 409

Query: 633 GIHSSRRHTSLLECLEIHSCPSLTCL-ISKNELRAALDYLVVGNLPQALKFLSIWHCSKL 691
                     + E     S   L  L IS    +      +   L   L  L +   S  
Sbjct: 410 ------TLKRVTEFSAFLSLEKLLYLDISYTNTKI-DFDGIFLGLTS-LNTLKMAGNSFK 461

Query: 692 ESIVER-LDNKISLEVIEIVSCENLKMLPHG-LHKLWHLQEIDIQDCENLVSFPEGGLLS 749
           ++ +     N  +L  +++  C  L+ +  G    L  LQ +++    NL+         
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQ 519

Query: 750 AK-LKRLVIYGCKKLEALPEG-MHNLSSLQYLTIGG 783
              L  L     + +E       H   SL +  +  
Sbjct: 520 LYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 8e-04
 Identities = 101/666 (15%), Positives = 200/666 (30%), Gaps = 112/666 (16%)

Query: 101 ISEVPDSIGDLSYLRYLNLSGTQIRTLPESV-NKLYNLHTLLLEGCRELKKKCADMGNLI 159
           +S+VPD I   S  + ++LS   ++ L     +    L  L L  C     +      L 
Sbjct: 23  LSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLH 80

Query: 160 KLHHLN---NSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNI 216
            L +L    N           G+  L  L+ +   +   +S   + +L  L  L      
Sbjct: 81  HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFP-IGQLITLKKL------ 133

Query: 217 SKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQ 276
             + +       + A      NL  + L    S N + +      + + +  + + SL+ 
Sbjct: 134 -NVAHNFIHSCKLPAYFSNLTNLVHVDL----SYNYIQTITVNDLQFLRENPQVNLSLD- 187

Query: 277 FCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRL 336
             +S              +   L  L  +     +++     L +L  L V  +   +  
Sbjct: 188 --MSLNPIDFIQDQAFQGI--KLHELTLRGNFNSSNIMK-TCLQNLAGLHVHRLILGEFK 242

Query: 337 GSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTL 396
                    P     L  +   E +            +      +  + +   S      
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED 302

Query: 397 PTHLTLLDILVVQN-------FTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMF 449
                    L +            LP L  L                       ++    
Sbjct: 303 VPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL----------------------TLTMNKG 340

Query: 450 LGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFL----- 504
                K+ LP L  LD+S          +N        +            L+ L     
Sbjct: 341 SISFKKVALPSLSYLDLS----------RNALSFSGCCS----YSDLGTNSLRHLDLSFN 386

Query: 505 --EEEDQWQFGLSFRLEHLELINCQDLEKLPK--SLLSLSSLTEMRIHNCSSLVSFPEAV 560
                     GL   L+HL+  +   L+++ +  + LSL  L  + I   ++ + F    
Sbjct: 387 GAIIMSANFMGLE-ELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF 444

Query: 561 LP-SQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGV-QLPPSLKQLE 618
           L  + L  + +  +          +  N ++L  LD+  C L     GV      L+ L 
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTLSN-VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503

Query: 619 IYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCL-ISKNELRAALDYLVVGNLP 677
           + +  NL  L +                   +   SL+ L  S N +  +   L   + P
Sbjct: 504 MSHN-NLLFLDSS----------------HYNQLYSLSTLDCSFNRIETSKGIL--QHFP 544

Query: 678 QALKFLSI----WHCS-KLESIVERL-DNKISLEVIEIVSCENLKMLPHGLHKLWHLQEI 731
           ++L F ++      C  + +  ++ + + K  L  +E ++C      P  ++    + + 
Sbjct: 545 KSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCAT----PVEMNTS-LVLDF 599

Query: 732 DIQDCE 737
           +   C 
Sbjct: 600 NNSTCY 605

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 9e-04
 Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 1/126 (0%)

Query: 52  FEDLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDL 111
            ++L  +   R +L              SI+  L  +             S+       L
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284

Query: 112 SYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDS 171
           + +  ++L+G  I+ L +     +   +L +  C+  +    D+  L  L    N  + S
Sbjct: 285 ANVSAMSLAGVSIKYLEDVPK-HFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSIS 343

Query: 172 LEEMPL 177
            +++ L
Sbjct: 344 FKKVAL 349

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.2 bits (125), Expect = 6e-07
 Identities = 64/267 (23%), Positives = 92/267 (34%), Gaps = 57/267 (21%)

Query: 518 LEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALK 577
           L  LE+   Q L  LP     L  L+         L   P   LPS L  + I+ +  L 
Sbjct: 83  LRTLEVSGNQ-LTSLPVLPPGLLELSIFSN----PLTHLPA--LPSGLCKLWIFGN-QLT 134

Query: 578 FLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSS 637
            LP          L+ L +    L +      LP    +L      N +           
Sbjct: 135 SLPV-----LPPGLQELSVSDNQLAS------LPALPSELCKLWAYNNQ----------- 172

Query: 638 RRHTSLLECLEIHSCPSLTCL-ISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVE 696
              TSL           L  L +S N+L +      +  LP  L  L  ++  +L S+  
Sbjct: 173 --LTSLPMLP-----SGLQELSVSDNQLAS------LPTLPSELYKLWAYNN-RLTSLPA 218

Query: 697 RLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLV 756
                  L    IVS   L  LP        L+E+ +     L S P    L + L  L 
Sbjct: 219 LPSGLKEL----IVSGNRLTSLPVLPS---ELKELMVSGN-RLTSLPM---LPSGLLSLS 267

Query: 757 IYGCKKLEALPEGMHNLSSLQYLTIGG 783
           +Y  + L  LPE + +LSS   + + G
Sbjct: 268 VYRNQ-LTRLPESLIHLSSETTVNLEG 293

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.0 bits (122), Expect = 2e-06
 Identities = 27/118 (22%), Positives = 39/118 (33%), Gaps = 21/118 (17%)

Query: 82  LPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLY------ 135
           LP L     LR   + G  ++ +P     L  L   +   T +  LP  + KL+      
Sbjct: 76  LPALPP--ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQL 133

Query: 136 --------NLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCL 185
                    L  L +   + L    A    L KL   NN     L  +P+    L  L
Sbjct: 134 TSLPVLPPGLQELSVSDNQ-LASLPALPSELCKLWAYNN----QLTSLPMLPSGLQEL 186

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 15/105 (14%)

Query: 82  LPRLL-KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTL 140
           LP L  +L +L  ++ +   ++ +P     L   + L++S  Q+ +LP   ++LY L   
Sbjct: 156 LPALPSELCKLWAYNNQ---LTSLPMLPSGL---QELSVSDNQLASLPTLPSELYKLWAY 209

Query: 141 LLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCL 185
                  L    A    L +L    N     L  +P+   +L  L
Sbjct: 210 NN----RLTSLPALPSGLKELIVSGN----RLTSLPVLPSELKEL 246

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 91  LRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKK 150
             V ++    ++ +PD +   +++  L +    + +LP        L TL + G + L  
Sbjct: 42  NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTS 95

Query: 151 KCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTC 184
                  L++L   +N  T  L  +P G+ KL  
Sbjct: 96  LPVLPPGLLELSIFSNPLT-HLPALPSGLCKLWI 128

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 3e-06
 Identities = 105/729 (14%), Positives = 210/729 (28%), Gaps = 139/729 (19%)

Query: 90  RLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTL-PESVNKLYNLHTLLLEGCREL 148
              V       +++VPD +   + +  LNL+  Q+R L   +  +   L +L +      
Sbjct: 5   SHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 149 KKKCADMGNLIKLHHLN-NSNTDSLEEMPLG-IGKLTCLLTL---CNFVVGKDSGSGLRE 203
           K +      L  L  LN   N   L ++        T L  L    N +    +     +
Sbjct: 63  KLEPELCQKLPMLKVLNLQHN--ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP-FVK 119

Query: 204 LKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKG 263
            K L  L   L+ + L + K             +NL+ L+L    S N + +     +  
Sbjct: 120 QKNLITLD--LSHNGLSSTK------LGTQVQLENLQELLL----SNNKIQA----LKSE 163

Query: 264 VLDMLKPHRSLEQF-----CISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSV-- 316
            LD+     SL++       I  F    F           L  L   +  +  S+     
Sbjct: 164 ELDIFAN-SSLKKLELSSNQIKEFSPGCF------HAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 317 --GQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQE 374
                 S+++L +          + F G      +  L  L  +        +    +  
Sbjct: 217 LELANTSIRNLSLSNSQLSTTSNTTFLGL----KWTNLTMLDLSYNN-----LNVVGNDS 267

Query: 375 IEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTT 434
               P+L    +     +Q                    L  +  L + R       S  
Sbjct: 268 FAWLPQLEYFFLEYN-NIQHLFSHS-----------LHGLFNVRYLNLKRSFTKQSISLA 315

Query: 435 DCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLK 494
                    I +  F        L  L+ L++       + I   ++ +   +  LK L 
Sbjct: 316 SLPK-----IDDFSFQW------LKCLEHLNMED-----NDIPGIKSNMFTGLINLKYLS 359

Query: 495 IERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLV 554
           +            + +       L  L L   +  +    +   L  L  + +       
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE--- 416

Query: 555 SFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGV-QLPPS 613
                                +             ++  + + +   L        L PS
Sbjct: 417 ---------------------IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS 455

Query: 614 LKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCL-ISKNELRAALDYLV 672
           L++L +     L+ + +                       +LT L +S N +   ++  +
Sbjct: 456 LQRLMLRRV-ALKNVDSSPSP--------------FQPLRNLTILDLSNNNIA-NINDDM 499

Query: 673 VGNLPQALKFL--------SIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHG-LH 723
           +  L + L+ L         +W  +     +  L     L ++ +        +P     
Sbjct: 500 LEGLEK-LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL-ESNGFDEIPVEVFK 557

Query: 724 KLWHLQEIDIQDCENLVSFPEGGLLSA-KLKRLVIYGCKKLEALPEGM--HNLSSLQYLT 780
            L+ L+ ID+    NL + P     +   LK L +     + ++ + +      +L  L 
Sbjct: 558 DLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELD 615

Query: 781 IGGVPSLLC 789
           +   P   C
Sbjct: 616 MRFNP-FDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 82/586 (13%), Positives = 167/586 (28%), Gaps = 113/586 (19%)

Query: 88  LQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTLPESV-NKLYNLHTLLLEGC 145
             +L    +    IS++ P+    L  L+ LNL   ++  L +       NL  L L   
Sbjct: 48  YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107

Query: 146 R--ELKKKCADMGNLIKLHHLN---NSNTDSLEEMPLGIGKLTCL-LTLCNFVVGKDSGS 199
              ++K           L  L+   N  + +     + +  L  L L+       K    
Sbjct: 108 SIQKIKNNP--FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165

Query: 200 GLRELKLLTHLCGTLN-ISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREA 258
            +     L  L  + N I +                    L  L L    +   L     
Sbjct: 166 DIFANSSLKKLELSSNQIKEFS---------PGCFHAIGRLFGLFL----NNVQLGPSLT 212

Query: 259 QTEKGVLDMLKPHR-SLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSV- 316
           +     L        SL    +S        T      ++NL  L     ++        
Sbjct: 213 EKLCLELANTSIRNLSLSNSQLSTT----SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268

Query: 317 GQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEW----IPHGCS 372
             LP L++  +   +         +G  +      +  L+       +      +P    
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFN------VRYLNLKRSFTKQSISLASLPKIDD 322

Query: 373 QEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRS 432
              +    L  L++                +  +    FT L  L  L +      +   
Sbjct: 323 FSFQWLKCLEHLNMEDND------------IPGIKSNMFTGLINLKYLSLSNSFTSL--- 367

Query: 433 TTDCESQLYKDISNQMFLGGPLKLQLPKLDELD-----ISIIIDG-------LSYIWQNE 480
                    + ++N+ F+     L    L  L+     IS I          L  +    
Sbjct: 368 ---------RTLTNETFVS----LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414

Query: 481 TQLLQDIATLKRLKIERCPKLQFL-------EEEDQWQFGLSFRLEHLELINCQ--DLEK 531
            ++ Q++      +      +  +        +  +  F L   L+ L L      +++ 
Sbjct: 415 NEIGQELT---GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471

Query: 532 LPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPS--QLRV-------ISIWDSGALKFLPEA 582
            P     L +LT + + N  ++ +  + +L    +L +       ++     A    P  
Sbjct: 472 SPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP-I 529

Query: 583 WMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTL 628
           + L   S L IL++            ++P  +      +   L+ +
Sbjct: 530 YFLKGLSHLHILNLESNGF------DEIPVEV----FKDLFELKII 565

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 4e-06
 Identities = 69/403 (17%), Positives = 128/403 (31%), Gaps = 45/403 (11%)

Query: 518 LEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVL--PSQLRVISIWDSGA 575
           L  L+L  CQ       +  S   L  + +     L+   E  L  P  L+ +    +G 
Sbjct: 59  LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHLFFIQTG- 116

Query: 576 LKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLP-PSLKQLEIYNCDNLRTLTAE--E 632
           +  +     L N  +LE L +   H+ +       P   LK L+  N   +  L+ E   
Sbjct: 117 ISSIDFI-PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMS 174

Query: 633 GIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLE 692
            +  +   +  L   +I          +  +         +  + + LK  +I       
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234

Query: 693 SIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLS--A 750
                 D             +    +  GL ++  ++ I++Q   +             +
Sbjct: 235 F----EDMDDE---------DISPAVFEGLCEM-SVESINLQK--HYFFNISSNTFHCFS 278

Query: 751 KLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGG--VPSLLCFTEDGLFPTNLHSLEIDGM 808
            L+ L +     L  LP G+  LS+L+ L +      +L   +       +L  L I G 
Sbjct: 279 GLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNF--PSLTHLSIKGN 335

Query: 809 KIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPN-- 866
              +  +  G      +LR L +S  D       +E           L+ L+  N     
Sbjct: 336 TK-RLELGTGCLENLENLRELDLSHDD-------IETSDCCNLQLRNLSHLQSLNLSYNE 387

Query: 867 LERLSSSICD--QNLTSLKLTNCPKLKYFPEKGLPASLLRLEI 907
              L +        L  L L    +LK    +    +L  L++
Sbjct: 388 PLSLKTEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKV 429

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 72/461 (15%), Positives = 152/461 (32%), Gaps = 59/461 (12%)

Query: 457 QLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSF 516
               L+ L +       ++I   +         LK L  +    + +L +ED        
Sbjct: 127 NQKTLESLYLG-----SNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKED---MSSLQ 177

Query: 517 RLEHLEL-INCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQ---LRVISIWD 572
           +  +L L +N  D+  +       +    +      +L+   + +  S    L + +  D
Sbjct: 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237

Query: 573 SGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGV-QLPPSLKQLEIYNCDNLRTLTAE 631
                  P  +      S+E ++++  +     +        L++L++    +L  L + 
Sbjct: 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSG 296

Query: 632 EGIHSSRRHTSLLECLEIHSCPSLTCL-ISKNELRAALDYLVVGNLPQALKFLSIWHCSK 690
                            +    +L  L +S N+    L  +   N P  L  LSI   +K
Sbjct: 297 -----------------LVGLSTLKKLVLSANKFEN-LCQISASNFPS-LTHLSIKGNTK 337

Query: 691 LESIVER-LDNKISLEVIEIVSC--ENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGL 747
              +    L+N  +L  +++     E        L  L HLQ +++      +S      
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAF 396

Query: 748 LS-AKLKRLVIYGCKKLEALPEG-MHNLSSLQYLTIGGVPSLLCFTEDGLFP--TNLHSL 803
               +L+ L +   +      +    NL  L+ L +    SLL  + + LF     L  L
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH--SLLDISSEQLFDGLPALQHL 454

Query: 804 EIDGMKI-WKSLMQLGGFHRYTSLRRLAISGC---DEDMVSFP----LEDIRLGTTLPAC 855
            + G      ++ +         L  L +S C     D  +F     +  + L       
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR--- 511

Query: 856 LTQLEIFNFPNLERLSSSICDQNLTSLK---LTNCPKLKYF 893
           LT   I    +L+ +  ++   +++ +    L    + +  
Sbjct: 512 LTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTI 552

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 2e-04
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 4/105 (3%)

Query: 88  LQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESV-NKLYNLHTLLLEG-C 145
              L+   L    +SE+P  +  LS L+ L LS  +   L +   +   +L  L ++G  
Sbjct: 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336

Query: 146 RELKKKCADMGNLIKLHHLNNSNTD--SLEEMPLGIGKLTCLLTL 188
           + L+     + NL  L  L+ S+ D  + +   L +  L+ L +L
Sbjct: 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 101/560 (18%), Positives = 184/560 (32%), Gaps = 101/560 (18%)

Query: 85  LLKLQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTLPESV-NKLYNLHTLLL 142
                 L+V  L    I  +   +   LS+L  L L+G  I++L     + L +L  L+ 
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 143 EGCRELKKKCADMGNLIKLHHLN-NSNTDSLEEMPLGIGKLTCL--LTLCNFVVGKDSGS 199
                   +   +G+L  L  LN   N     ++P     LT L  L L +  +     +
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

Query: 200 GLRELKLLTHLCGTLNISK--------------------LENVKYVGDAMEAQLDGKKNL 239
            LR L  +  L  +L++S                     L N     + M+  + G   L
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 227

Query: 240 KVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNL 299
           +V  L              + +K  L+ L  + ++E+F ++            ++  +N+
Sbjct: 228 EVHRL--VLGEFRNEGNLEKFDKSALEGL-CNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 300 VTLKFQDCSMCTSMPSVGQLPSLKHLEV-------------RGMSRVKRLGSEFYGNDSP 346
            +      ++   +         +HLE+             + + R+    ++     S 
Sbjct: 285 SSFSLVSVTI-ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343

Query: 347 IPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDIL 406
           +  P LE L  +      +     CSQ   G   L+ L +             +  +   
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGC---CSQSDFGTTSLKYLDLSFN---------GVITMS-- 389

Query: 407 VVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDI 466
              NF  L  L  L                   L +     +FL       L  L  LDI
Sbjct: 390 --SNFLGLEQLEHLDFQHS-------------NLKQMSEFSVFLS------LRNLIYLDI 428

Query: 467 S-----IIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHL 521
           S     +  +G          +   +++L+ LK+       F E      F     L  L
Sbjct: 429 SHTHTRVAFNG----------IFNGLSSLEVLKMAGN---SFQENFLPDIFTELRNLTFL 475

Query: 522 ELINCQDLEKLPKSLLS-LSSLTEMRIHNCSSLVSFPEAVLP--SQLRVISIWDSGALKF 578
           +L  CQ LE+L  +  + LSSL  + + +  +  S         + L+V+       +  
Sbjct: 476 DLSQCQ-LEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDY-SLNHIMT 532

Query: 579 LPEAWMLDNNSSLEILDIRH 598
             +  +    SSL  L++  
Sbjct: 533 SKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 64/429 (14%), Positives = 124/429 (28%), Gaps = 87/429 (20%)

Query: 513 GLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLP-SQLRVISIW 571
            L F  ++L+L           S  S   L  + +  C        A    S L  + + 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 572 DSGALKFLPEAWMLDNNSSLEILDIRHCHLLT--------------------YIAGVQLP 611
            +  ++ L         SSL+ L     +L +                     I   +LP
Sbjct: 85  GN-PIQSLALGA-FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 612 ------PSLKQLEIYNCDNLRTLTAEE--GIHSSRRHTSLLEC---------LEIHSCPS 654
                  +L+ L++ +   ++++   +   +H        L+                  
Sbjct: 143 EYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 655 LTCL-ISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCE 713
           L  L +  N     +    +  L   L+   +              N+ +LE  +  + E
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAG-LEVHRLVLGE--------FRNEGNLEKFDKSALE 252

Query: 714 NLKML-----------------PHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLV 756
            L  L                     + L ++    +     +    +        + L 
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERVKDFSYNF-GWQHLE 310

Query: 757 IYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQ 816
           +  C K    P     L SL+ LT         F+E  L   +L  L++    +      
Sbjct: 311 LVNC-KFGQFPTL--KLKSLKRLTFTSNKGGNAFSEVDL--PSLEFLDLSRNGLSFKGCC 365

Query: 817 LGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPN--LERLSSSI 874
                  TSL+ L +S          +  +         L QLE  +F +  L+++S   
Sbjct: 366 SQSDFGTTSLKYLDLSFNG-------VITMSSNFL---GLEQLEHLDFQHSNLKQMSEFS 415

Query: 875 CDQNLTSLK 883
              +L +L 
Sbjct: 416 VFLSLRNLI 424

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 4/115 (3%)

Query: 58  IQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRG---YLISEVPDSIGDLSYL 114
                TL   +L                + L  L    L             S    + L
Sbjct: 316 FGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 115 RYLNLSGTQIRTLPESVNKLYNLHTLLLEGCR-ELKKKCADMGNLIKLHHLNNSN 168
           +YL+LS   + T+  +   L  L  L  +    +   + +   +L  L +L+ S+
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 1e-05
 Identities = 49/312 (15%), Positives = 94/312 (30%), Gaps = 80/312 (25%)

Query: 517 RLEHLELINCQ---DLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDS 573
           ++  ++L +         +  SLLSL+ L  + + N     S       + L  + +  +
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN 110

Query: 574 GALKFLPEAWMLDNNSSLEILDIRHCHLLTYI---AGVQLPPSLKQLEIYNCDNLRTLTA 630
                +     L + S L+ L++    L        G++L  SL+ L++        ++ 
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN-SLEVLDLSANS----ISG 165

Query: 631 EEGIHSSRRHTSLLECLEIHSCPSLTCL-ISKNELRAALDYLVVGNLPQALKFLSIWHCS 689
                     +          C  L  L IS N++         G++        +  C 
Sbjct: 166 A--NVVGWVLSD--------GCGELKHLAISGNKIS--------GDVD-------VSRCV 200

Query: 690 KLESIVERL-DNKISLEVIEIVSCENLKML-----------PHGLHKLWHLQEIDIQDCE 737
            LE +   +  N  S  +  +  C  L+ L              +     L+ ++I    
Sbjct: 201 NLEFL--DVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN- 257

Query: 738 NLV-SFPEGGLLSAKLKRLVIYG--------------CKKLEAL-----------PEGMH 771
             V   P   L    L+ L +                C  L  L           P    
Sbjct: 258 QFVGPIPPLPL--KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315

Query: 772 NLSSLQYLTIGG 783
           + S L+ L +  
Sbjct: 316 SCSLLESLALSS 327

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.6 bits (101), Expect = 6e-04
 Identities = 47/276 (17%), Positives = 84/276 (30%), Gaps = 50/276 (18%)

Query: 80  SILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIR-TLPE--SVNKLYN 136
           ++   LL L  L    L    I+         + L  L+LS   +   +    S+     
Sbjct: 68  AVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127

Query: 137 LHTLLLEGCR-ELKKKCADMGNLIKLHHL---NNSNTDSLEEMPLGIGKLTCLLTL---- 188
           L  L +     +   K +    L  L  L    NS + +     +       L  L    
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187

Query: 189 CNFVVGKDSGSGLRELKLL----THLCGTL-NISKLENVKYVGDAMEAQLDGK------- 236
                G    S    L+ L     +    +  +     ++++ D    +L G        
Sbjct: 188 NKI-SGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHL-DISGNKLSGDFSRAIST 245

Query: 237 -KNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPH---RSLEQFCISG--FGGKKFPTW 290
              LK+L +    S+N           G +    P    +SL+   ++   F G + P +
Sbjct: 246 CTELKLLNI----SSNQFV--------GPI----PPLPLKSLQYLSLAENKFTG-EIPDF 288

Query: 291 LGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHL 325
           L  +    L  L         ++P   G    L+ L
Sbjct: 289 LSGAC-DTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 26/155 (16%), Positives = 54/155 (34%), Gaps = 8/155 (5%)

Query: 35  NLHHLSYIRGDYDGVKRFEDLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVF 94
            +  L  +  + + ++ F  L  +  +R      L S              ++   +RV 
Sbjct: 391 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS----KFLLENSVLKMEYADVRVL 446

Query: 95  SLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCAD 154
            L    ++ +   +  L  + +L+LS  ++R LP ++  L  L  L         +    
Sbjct: 447 HLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA--LENVDG 503

Query: 155 MGNLIKLHHLN-NSNTDSLEEMPLGIGKLTCLLTL 188
           + NL +L  L   +N          +     L+ L
Sbjct: 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 4e-05
 Identities = 11/60 (18%), Positives = 23/60 (38%)

Query: 87  KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCR 146
           K+QRL    +    +  +      +  L+ L+LS   +  +  +  +   L  L L+   
Sbjct: 276 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 335

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 2/88 (2%)

Query: 82  LPRLLKLQRLRVFSLRGYLISEVP-DSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTL 140
              LL    L    L    + ++       +  L  L +S  ++  L      +  L  L
Sbjct: 247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 306

Query: 141 LLEGCRELKKKCADMGNLIKLHHLNNSN 168
            L     L     +     +L +L   +
Sbjct: 307 DLSHNH-LLHVERNQPQFDRLENLYLDH 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.8 bits (109), Expect = 5e-05
 Identities = 11/60 (18%), Positives = 23/60 (38%)

Query: 87  KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCR 146
           K+QRL    +    +  +      +  L+ L+LS   +  +  +  +   L  L L+   
Sbjct: 270 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 329

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 6e-05
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 5/100 (5%)

Query: 82  LPRLLKLQRLRVFSLRGYLISEVPDSI-GDLSYLRYLNLSGTQIRTLPESVNKLYNLHTL 140
              LL    L    L    + ++       +  L  L +S  ++  L      +  L  L
Sbjct: 241 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL 300

Query: 141 LLEGCRELKKKCADMGNLIKLHHLN-NSNTDSLEEMPLGI 179
            L     L     +     +L +L  + N  S+  + L  
Sbjct: 301 DLSHNH-LLHVERNQPQFDRLENLYLDHN--SIVTLKLST 337

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.9 bits (108), Expect = 6e-05
 Identities = 32/204 (15%), Positives = 68/204 (33%), Gaps = 40/204 (19%)

Query: 82  LPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLL 141
                +  +    +L+   +++   +  +L+ +  +  + + I+++ + +  L N+  L 
Sbjct: 17  DDAFAETIKD---NLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLF 71

Query: 142 LEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLC---NFVVGKDSG 198
           L G +        + NL  L  L       ++++   +  L  L +L    N +      
Sbjct: 72  LNGNK--LTDIKPLTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNGIS---DI 124

Query: 199 SGLRELKLLTHLCGTLN-ISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSRE 257
           +GL  L  L  L    N I+ +             L     L  L L      N +S   
Sbjct: 125 NGLVHLPQLESLYLGNNKITDITV-----------LSRLTKLDTLSL----EDNQISD-- 167

Query: 258 AQTEKGVLDMLKPHRSLEQFCISG 281
                  +  L     L+   +S 
Sbjct: 168 -------IVPLAGLTKLQNLYLSK 184

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.9 bits (108), Expect = 6e-05
 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 16/137 (11%)

Query: 35  NLHHLSYIRGDYDGVKRFEDLYDIQHLRTLLPVTLLSSRPGYLAR---SILPRLLKLQRL 91
           +L  L  +  +++G+     L  +  L +L           YL     + +  L +L +L
Sbjct: 107 DLKKLKSLSLEHNGISDINGLVHLPQLESL-----------YLGNNKITDITVLSRLTKL 155

Query: 92  RVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKK 151
              SL    IS++   +  L+ L+ L LS   I  L  ++  L NL  L L     L K 
Sbjct: 156 DTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKP 213

Query: 152 CADMGNLIKLHHLNNSN 168
                NL+  + + N++
Sbjct: 214 INHQSNLVVPNTVKNTD 230

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.4 bits (99), Expect = 7e-04
 Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 18/157 (11%)

Query: 35  NLHHLSYIRGDYDGVKRFEDLYDIQHLRTLLPVTLLSSRPGYLAR---SILPRLLKLQRL 91
           NL +L ++  D + +K    L D++ L++L            L     S +  L+ L +L
Sbjct: 85  NLKNLGWLFLDENKIKDLSSLKDLKKLKSL-----------SLEHNGISDINGLVHLPQL 133

Query: 92  RVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKK 151
               L    I+++   +  L+ L  L+L   QI  +   +  L  L  L L         
Sbjct: 134 ESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNH--ISD 189

Query: 152 CADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTL 188
              +  L  L  L   + + L +       L    T+
Sbjct: 190 LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 1e-04
 Identities = 46/287 (16%), Positives = 97/287 (33%), Gaps = 55/287 (19%)

Query: 518 LEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALK 577
           LE+L L   Q +  +   L +L  LT + I     +         + LR + + +   + 
Sbjct: 68  LEYLNLNGNQ-ITDIS-PLSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYLNEDN-IS 123

Query: 578 FLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSS 637
            +     L N + +  L++   H L+ ++ +     L  L +     ++ +T    +   
Sbjct: 124 DISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTPIANLTD- 178

Query: 638 RRHTSLLECLEIHS-----------CPSLTCL-ISKNELRAALDYLVVGNLPQALKFLSI 685
                 L  L ++              SL       N++    D   V N+ + L  L I
Sbjct: 179 ------LYSLSLNYNQIEDISPLASLTSLHYFTAYVNQIT---DITPVANMTR-LNSLKI 228

Query: 686 WHCSKLESIVERLDNKISLEVIEIVSCENLKML---------PHGLHKLWHLQEIDIQDC 736
            +            NKI+ ++  + +   L  L          + +  L  L+ +++   
Sbjct: 229 GN------------NKIT-DLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN 275

Query: 737 ENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGG 783
             +        LS +L  L +   +      E +  L++L  L +  
Sbjct: 276 -QISDISVLNNLS-QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 5e-04
 Identities = 25/149 (16%), Positives = 61/149 (40%), Gaps = 14/149 (9%)

Query: 80  SILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHT 139
           S +  L  L ++   +L           + +++ L YL ++ ++++ +   +  L +L++
Sbjct: 123 SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYS 181

Query: 140 LLLEGCR--ELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTL---CNFVVG 194
           L L   +  ++      + +L  LH+        + ++   +  +T L +L    N +  
Sbjct: 182 LSLNYNQIEDIS----PLASLTSLHYFTAYVN-QITDIT-PVANMTRLNSLKIGNNKITD 235

Query: 195 KDSGSGLRELKLLTHLCGTLNISKLENVK 223
               + L +L  L  +     IS +  VK
Sbjct: 236 LSPLANLSQLTWL-EIGTN-QISDINAVK 262

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 44/262 (16%), Positives = 87/262 (33%), Gaps = 51/262 (19%)

Query: 529 LEKLPKSLLS-LSSLTEMRIHNCS--SLVSFPEAVLPSQLRVISIWDSGALKFLPEAWML 585
           +        S      +  +   +    VS  +  L +Q   + +     L  LP+    
Sbjct: 22  ISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN-LSSLPDNL-- 78

Query: 586 DNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLE 645
                + +L+I    L      + LP     LE  +  + R              ++L E
Sbjct: 79  --PPQITVLEITQNAL------ISLPELPASLEYLDACDNR-------------LSTLPE 117

Query: 646 CLEIHSCPSLTCL-ISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISL 704
                   SL  L +  N+L        +  LP  L++++  +  +L  + E   +   L
Sbjct: 118 LP-----ASLKHLDVDNNQLTM------LPELPALLEYINADNN-QLTMLPELPTS---L 162

Query: 705 EVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEG-GLLSAKLKRLVIYGCK-- 761
           EV+  V    L  LP     L   + +D+     L S P          +  + + C+  
Sbjct: 163 EVLS-VRNNQLTFLPELPESL---EALDVSTNL-LESLPAVPVRNHHSEETEIFFRCREN 217

Query: 762 KLEALPEGMHNLSSLQYLTIGG 783
           ++  +PE + +L     + +  
Sbjct: 218 RITHIPENILSLDPTCTIILED 239

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 38/140 (27%)

Query: 82  LPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYL-----------------RYLNLSGTQI 124
           LP  L   ++ V  +    +  +P+    L YL                 ++L++   Q+
Sbjct: 74  LPDNL-PPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQL 132

Query: 125 RTLPESVNKLYNLH------TLLLEGCRELKK-KCAD---------MGNLIKLHHLNNSN 168
             LPE    L  ++      T+L E    L+     +           +L  L    N  
Sbjct: 133 TMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTN-- 190

Query: 169 TDSLEEMPLGIGKLTCLLTL 188
              LE +P    +       
Sbjct: 191 --LLESLPAVPVRNHHSEET 208

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 1/86 (1%)

Query: 83  PRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLL 142
            +     R R   LRGY I  + +    L     ++ S  +IR L +    L  L TLL+
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLV 71

Query: 143 EGCRELKKKCADMGNLIKLHHLNNSN 168
              R  +        L  L  L  +N
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTN 97

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 16/142 (11%)

Query: 35  NLHHLSYIRGDYDGVKRFEDLYDIQHLRTLLPVTLLSSRPGYLAR---SILPRLLKLQRL 91
           +L  L  +  +++G+     L  +  L +L           YL     + +  L +L +L
Sbjct: 110 DLKKLKSLSLEHNGISDINGLVHLPQLESL-----------YLGNNKITDITVLSRLTKL 158

Query: 92  RVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKK 151
              SL    IS++   +  L+ L+ L LS   I  L  ++  L NL  L L     L K 
Sbjct: 159 DTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKP 216

Query: 152 CADMGNLIKLHHLNNSNTDSLE 173
                NL+  + + N++   + 
Sbjct: 217 INHQSNLVVPNTVKNTDGSLVT 238

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 46/262 (17%), Positives = 84/262 (32%), Gaps = 40/262 (15%)

Query: 651 SCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVER-LDNKISLEVIEI 709
            C +   L  ++++       +  +LP+    L     +KL  I +        LE IEI
Sbjct: 8   HCSNRVFLCQESKVTE-----IPSDLPRNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEI 61

Query: 710 VSCENLKMLPHG-LHKLWHLQEIDIQDCENLVSFPEGGLLS-AKLKRLVIYGCKKLEALP 767
              + L+++       L  L EI I+   NL+        +   L+ L+I     ++ LP
Sbjct: 62  SQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLP 120

Query: 768 EGMH-NLSSLQYLTIGGVPSLLCFTEDGLF---PTNLHSLEIDGMKIWK---------SL 814
           +    +      L I    ++    E   F         L ++   I +          L
Sbjct: 121 DVHKIHSLQKVLLDIQDNINIHTI-ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL 179

Query: 815 MQLGGFH--RYTSLRRLAISGCDEDMVSFPLEDIRLG----TTLPAC----LTQLEIFNF 864
            +L          L      G            + +      +LP+     L +L   + 
Sbjct: 180 DELNLSDNNNLEELPNDVFHGASG------PVILDISRTRIHSLPSYGLENLKKLRARST 233

Query: 865 PNLERLSSSICDQNLTSLKLTN 886
            NL++L +      L    LT 
Sbjct: 234 YNLKKLPTLEKLVALMEASLTY 255

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 47/266 (17%), Positives = 93/266 (34%), Gaps = 60/266 (22%)

Query: 377 GFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDC 436
           GF  L ++ I +   L+  +   +          F++LP L ++RI++   +        
Sbjct: 52  GFGDLEKIEISQNDVLE-VIEADV----------FSNLPKLHEIRIEKANNL-------- 92

Query: 437 ESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIA-----TLK 491
                  I+ + F        LP L  L IS              + L D+         
Sbjct: 93  -----LYINPEAFQN------LPNLQYLLIS----------NTGIKHLPDVHKIHSLQKV 131

Query: 492 RLKIERCPKLQFLEEEDQWQF-GLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNC 550
            L I+    +  +E      F GLSF    L L     ++++  S  + + L E+ + + 
Sbjct: 132 LLDIQDNINIHTIERN---SFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDN 187

Query: 551 SSLVSFPEAVLP--SQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGV 608
           ++L   P  V    S   ++ I     +  LP ++ L+N   L      +   L  +  +
Sbjct: 188 NNLEELPNDVFHGASGPVILDI-SRTRIHSLP-SYGLENLKKLRARSTYN---LKKLPTL 242

Query: 609 QLPPSLKQLEI---YNCDNLRTLTAE 631
           +   +L +  +    +C        +
Sbjct: 243 EKLVALMEASLTYPSHCCAFANWRRQ 268

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.5 bits (101), Expect = 5e-04
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 20/116 (17%)

Query: 84  RLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGT-QIR-TLPESVNKLYNLHTLL 141
           +  ++  L +  L       +P S+ +L YL +L + G   +   +P ++ KL  LH L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 142 LEGCR-------ELKKKCADMGNLIKLHHLN-NSNTDSLE-EMPLGIGKLTCLLTL 188
           +            L         +  L  L+ + N  +L   +P  I  L  L+ +
Sbjct: 108 ITHTNVSGAIPDFL-------SQIKTLVTLDFSYN--ALSGTLPPSISSLPNLVGI 154

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 5e-04
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 11/97 (11%)

Query: 52  FEDLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVP-DSIGD 110
           F+ LY ++ L        +S  P     ++ P  L    L   S+    ++ VP  ++  
Sbjct: 196 FKRLYRLKVLE-------ISHWP--YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246

Query: 111 LSYLRYLNLSGTQIRTLPESV-NKLYNLHTLLLEGCR 146
           L YLR+LNLS   I T+  S+ ++L  L  + L G +
Sbjct: 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 48/236 (20%), Positives = 90/236 (38%), Gaps = 20/236 (8%)

Query: 610 LPPSLKQLEIYN-------CDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCL-ISK 661
           +P   + L++          D   +    E +  +    S +E    ++  +L  L +  
Sbjct: 30  IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89

Query: 662 NELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERL-DNKISLEVIEIVSCENLKMLPH 720
           N L+  +   V   L   L  L I    K+  +++ +  +  +L+ +E+    +L  + H
Sbjct: 90  NRLKL-IPLGVFTGLSN-LTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDN-DLVYISH 145

Query: 721 G-LHKLWHLQEIDIQDCENLVSFPEGGLLS-AKLKRLVIYGCKKLEALPEGM-HNLSSLQ 777
                L  L+++ ++ C NL S P   L     L  L +     + A+ +     L  L+
Sbjct: 146 RAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLK 203

Query: 778 YLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISG 833
            L I   P L   T + L+  NL SL I    +  + +          LR L +S 
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL--TAVPYLAVRHLVYLRFLNLSY 257

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 48/277 (17%), Positives = 107/277 (38%), Gaps = 49/277 (17%)

Query: 517 RLEHLELINCQDLEKLPKSLLS-LSSLTEMRIHNCSSLVSFPEAVLP--SQLRVISIWDS 573
            L+ L L +   +  + +   S L SL  + +     L +   +     S L  +++   
Sbjct: 77  NLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNL-LG 133

Query: 574 GALKFLPEAWMLDNNSSLEILDIRHCHLLTYI-AGV-QLPPSLKQLEIYNCDNLRTLTAE 631
              K L E  +  + + L+IL + +    T I          L++LEI    +L++   +
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPK 192

Query: 632 EGIHSSRRHTSLLECLEIHSCPSLTCLISKN-ELRAALDYLVVGNLPQALKFLSIWHCSK 690
                S +    +  L +H       L+    ++ ++++ L + +       L  +H S+
Sbjct: 193 -----SLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD-----LDTFHFSE 241

Query: 691 LESIV-ERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLS 749
           L +     L  K +   ++I + E+L  +   L+++  L E++                 
Sbjct: 242 LSTGETNSLIKKFTFRNVKI-TDESLFQVMKLLNQISGLLELEFSRN------------- 287

Query: 750 AKLKRLVIYGCKKLEALPEGM-HNLSSLQYLTIGGVP 785
                       +L+++P+G+   L+SLQ + +   P
Sbjct: 288 ------------QLKSVPDGIFDRLTSLQKIWLHTNP 312

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	943
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.98
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.98
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.9
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.9
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.87
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.87
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.85
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.83
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.81
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.81
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.81
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.81
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.8
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.79
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.78
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.78
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.78
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.77
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.77
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.76
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.76
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.76
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.75
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.73
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.73
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.72
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.72
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.71
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.71
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.7
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.69
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.68
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.68
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.68
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.67
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.66
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.66
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.65
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.64
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.64
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.63
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.62
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.61
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.59
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.59
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.56
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.55
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.55
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.54
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.51
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.5
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.5
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.5
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.48
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.48
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.47
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.47
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.45
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.45
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.45
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.43
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.42
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.37
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.37
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.36
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.36
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.36
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.35
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.35
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.34
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.31
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.31
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.3
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.3
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.3
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.29
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.29
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.27
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.25
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.24
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.23
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.23
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.19
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.17
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.16
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.13
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.1
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.05
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.03
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.95
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.9
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.89
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.87
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.76
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.67
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.5
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.5
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.41
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.36
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.29
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.16
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.12
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.11
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.1
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.96
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.95
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.83
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.75
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.6
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.51
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.3
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	93.24

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=8e-57  Score=541.06  Aligned_cols=658  Identities=17%  Similarity=0.089  Sum_probs=315.0

Q ss_pred             cchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCccc-ccch--hhhhccccceeecCCCcccccccHHH-h
Q 002284           81 ILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIR-TLPE--SVNKLYNLHTLLLEGCRELKKKCADM-G  156 (943)
Q Consensus        81 ~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~-~lp~--~i~~L~~L~~L~L~~n~~~~~~p~~~-~  156 (943)
                      +|+.+.++++|++++++.+.+..+|++|+++++|++|+|++|.+. .+|.  .++++++|++|++++|...+..|..+ .
T Consensus        69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  148 (768)
T 3rgz_A           69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL  148 (768)
T ss_dssp             HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred             cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence            677777889999999988888778888899999999999999887 4676  88899999999999987777777664 7


Q ss_pred             ccccCceEEcCCCCCCcccccc---ccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhccc
Q 002284          157 NLIKLHHLNNSNTDSLEEMPLG---IGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQL  233 (943)
Q Consensus       157 ~L~~L~~L~l~~n~~~~~~p~~---~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l  233 (943)
                      ++++|++|++++|.+.+..|..   ++++++|++|+...+.                        +...        ..+
T Consensus       149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~------------------------l~~~--------~~~  196 (768)
T 3rgz_A          149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK------------------------ISGD--------VDV  196 (768)
T ss_dssp             CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE------------------------EESC--------CBC
T ss_pred             cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc------------------------cccc--------CCc
Confidence            8889999999988855555544   5666666665321110                        0000        002


Q ss_pred             CCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCC
Q 002284          234 DGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSM  313 (943)
Q Consensus       234 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~  313 (943)
                      ..+++|++|++++|.+++..            +.+..                         +++|++|++++|.+.+.+
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~------------~~l~~-------------------------l~~L~~L~Ls~n~l~~~~  239 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGI------------PFLGD-------------------------CSALQHLDISGNKLSGDF  239 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCC------------CBCTT-------------------------CCSCCEEECCSSCCCSCH
T ss_pred             ccCCcCCEEECcCCcCCCCC------------ccccc-------------------------CCCCCEEECcCCcCCCcc
Confidence            34556666666655553211            11333                         445555555555544444


Q ss_pred             C-CCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCcccc-CCcccEEeeccCCC
Q 002284          314 P-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEG-FPKLRELHIVRCSK  391 (943)
Q Consensus       314 ~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~~~L~~L~l~~c~~  391 (943)
                      | .++.+++|++|++++|...+.++..        .+++|++|++++|.. .    +.+|..+.. +++|++|++++ ++
T Consensus       240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~--------~l~~L~~L~L~~n~l-~----~~ip~~~~~~~~~L~~L~Ls~-n~  305 (768)
T 3rgz_A          240 SRAISTCTELKLLNISSNQFVGPIPPL--------PLKSLQYLSLAENKF-T----GEIPDFLSGACDTLTGLDLSG-NH  305 (768)
T ss_dssp             HHHTTTCSSCCEEECCSSCCEESCCCC--------CCTTCCEEECCSSEE-E----ESCCCCSCTTCTTCSEEECCS-SE
T ss_pred             cHHHhcCCCCCEEECCCCcccCccCcc--------ccCCCCEEECcCCcc-C----CccCHHHHhhcCcCCEEECcC-Cc
Confidence            4 4445555555555555432222211        144555555555431 1    112223322 25555555555 34


Q ss_pred             ccCCCCCCCCCccEEEEeccCCCCccceEEeccCCcee-ee--ccCcccchhhhccccccccCC-Cc-cccCC-CCceee
Q 002284          392 LQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVV-WR--STTDCESQLYKDISNQMFLGG-PL-KLQLP-KLDELD  465 (943)
Q Consensus       392 l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~-~~--~~~~~~~l~~l~ls~n~l~~~-~~-~~~l~-~L~~L~  465 (943)
                      +++.+|..           +..+++|++|++++|.... ..  .+..+++++++++++|.+++. +. ...++ +|++|+
T Consensus       306 l~~~~p~~-----------~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~  374 (768)
T 3rgz_A          306 FYGAVPPF-----------FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD  374 (768)
T ss_dssp             EEECCCGG-----------GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEE
T ss_pred             CCCccchH-----------HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEE
Confidence            44444432           2344455555555554321 11  133344444444444444422 11 11222 444444


Q ss_pred             eeEeecCccccccchhhhhhc--ccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcC
Q 002284          466 ISIIIDGLSYIWQNETQLLQD--IATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLT  543 (943)
Q Consensus       466 Ls~~~~~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  543 (943)
                      ++  .   +.+....+..+..  +++|+.|++++|.....++..    +..+++|++|++++|.+.+.+|..+..+++|+
T Consensus       375 Ls--~---N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  445 (768)
T 3rgz_A          375 LS--S---NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT----LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR  445 (768)
T ss_dssp             CC--S---SEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG----GGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred             cc--C---CCcCCCcChhhhhcccCCccEEECCCCccccccCHH----HhcCCCCCEEECcCCcccCcccHHHhcCCCCC
Confidence            44  1   1111111111111  445555555555322222222    45555555555555555555555555555555


Q ss_pred             eeeccCCCCCcccCCCC-CCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCcCCCCCCceEEeccC
Q 002284          544 EMRIHNCSSLVSFPEAV-LPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNC  622 (943)
Q Consensus       544 ~L~L~~n~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~  622 (943)
                      +|++++|...+.+|... .+++|++|++++|...+.+|..+  .++++|++|++++|++.+.+|..              
T Consensus       446 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~L~~N~l~~~~p~~--------------  509 (768)
T 3rgz_A          446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL--SNCTNLNWISLSNNRLTGEIPKW--------------  509 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCGG--------------
T ss_pred             EEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH--hcCCCCCEEEccCCccCCcCChH--------------
Confidence            55555555443333322 14455555555555444444432  24455555555555443333221              


Q ss_pred             cCccccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccc
Q 002284          623 DNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKI  702 (943)
Q Consensus       623 ~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~  702 (943)
                                                                        ++.+ ++|+.|++++|...+.+|..+..++
T Consensus       510 --------------------------------------------------~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~  538 (768)
T 3rgz_A          510 --------------------------------------------------IGRL-ENLAILKLSNNSFSGNIPAELGDCR  538 (768)
T ss_dssp             --------------------------------------------------GGGC-TTCCEEECCSSCCEEECCGGGGGCT
T ss_pred             --------------------------------------------------HhcC-CCCCEEECCCCcccCcCCHHHcCCC
Confidence                                                              1111 3455666666555555666666666


Q ss_pred             cccEEEeeccCCcccccccccCCCCccEEeccCCCC----------------------CcccCcCCccccccceeeeccc
Q 002284          703 SLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCEN----------------------LVSFPEGGLLSAKLKRLVIYGC  760 (943)
Q Consensus       703 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~----------------------l~~~p~~~~~l~~L~~L~l~~~  760 (943)
                      +|+.|++++|++.+.+|..+.....+..+++..+..                      .+..+.....++.++.+++..+
T Consensus       539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  618 (768)
T 3rgz_A          539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR  618 (768)
T ss_dssp             TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred             CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence            666666666666666666555544444333322100                      0011111222233333444444


Q ss_pred             cCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceEEecCCcchhccccccCCCCCCCccEEEecCCCCcCcc
Q 002284          761 KKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVS  840 (943)
Q Consensus       761 ~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~~~~~  840 (943)
                      ...+.+|..+..+++|++|++++|.....+|..+..+++|+.|++++|.....++.  .++.+++|++|+++++ .....
T Consensus       619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~--~l~~L~~L~~LdLs~N-~l~g~  695 (768)
T 3rgz_A          619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD--EVGDLRGLNILDLSSN-KLDGR  695 (768)
T ss_dssp             EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSS-CCEEC
T ss_pred             eecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh--HHhCCCCCCEEECCCC-cccCc
Confidence            44444444444455555555555444444444444444555555555544433332  3444555555555541 22223


Q ss_pred             cCcccccccCCCCCCccEEEeecCCCCcccccccCCCCCCeEeecCCCCCccCCCCCCCCccceEeecCCchHHHHhhcc
Q 002284          841 FPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSICDQNLTSLKLTNCPKLKYFPEKGLPASLLRLEIKKCPLIEKMCRQD  920 (943)
Q Consensus       841 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~C~~L~~~~~~~l~~sL~~L~i~~C~~l~~~~~~~  920 (943)
                      +|...     ..+++|++|++++++--..+|....+..+....+.+++.|-..|                  +. .|...
T Consensus       696 ip~~l-----~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~------------------l~-~C~~~  751 (768)
T 3rgz_A          696 IPQAM-----SALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP------------------LP-RCDPS  751 (768)
T ss_dssp             CCGGG-----GGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT------------------SC-CCCSC
T ss_pred             CChHH-----hCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC------------------Cc-CCCCC
Confidence            33222     12333444444443222233332233444444444554433221                  11 35688


Q ss_pred             CCCCccccccccEEE
Q 002284          921 IGPYWHLLIHIPCVL  935 (943)
Q Consensus       921 ~~~~~~~~~~~~~~~  935 (943)
                      .+++|++++|++++.
T Consensus       752 ~~~~~~~~~~~~~~~  766 (768)
T 3rgz_A          752 NADGYAHHQRSHHHH  766 (768)
T ss_dssp             C--------------
T ss_pred             ccCCCCCCCCccccC
Confidence            999999999998753

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.1e-51  Score=496.32  Aligned_cols=633  Identities=17%  Similarity=0.087  Sum_probs=383.1

Q ss_pred             cCcccEEEecCccccc----cCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccH--HHhccccC
Q 002284           88 LQRLRVFSLRGYLISE----VPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCA--DMGNLIKL  161 (943)
Q Consensus        88 l~~L~~L~L~~n~i~~----lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~--~~~~L~~L  161 (943)
                      -.+++.|+|+++.+..    +|.++.++++|++++++.+.+..+|+.|+++++|++|+|++|.+.+.+|.  .++++++|
T Consensus        49 ~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L  128 (768)
T 3rgz_A           49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL  128 (768)
T ss_dssp             TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred             CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence            3689999999988654    78899999999999999999988889999999999999999998888888  89999999


Q ss_pred             ceEEcCCCCCCccccccc-cccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCC
Q 002284          162 HHLNNSNTDSLEEMPLGI-GKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLK  240 (943)
Q Consensus       162 ~~L~l~~n~~~~~~p~~~-~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~  240 (943)
                      ++|++++|.+.+.+|..+ +++++|++|                                                    
T Consensus       129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L----------------------------------------------------  156 (768)
T 3rgz_A          129 KFLNVSSNTLDFPGKVSGGLKLNSLEVL----------------------------------------------------  156 (768)
T ss_dssp             CEEECCSSEEECCSSCCSCCCCTTCSEE----------------------------------------------------
T ss_pred             CEEECcCCccCCcCCHHHhccCCCCCEE----------------------------------------------------
Confidence            999999998666666553 566666655                                                    


Q ss_pred             eEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCCCCCCCC
Q 002284          241 VLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQLP  320 (943)
Q Consensus       241 ~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~  320 (943)
                        ++++|.+++...        .....+..+++|+.|+++++........   ..+++|++|++++|.+.+.+|.++.++
T Consensus       157 --~Ls~n~l~~~~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~l~~l~  223 (768)
T 3rgz_A          157 --DLSANSISGANV--------VGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPFLGDCS  223 (768)
T ss_dssp             --ECCSSCCEEETH--------HHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCBCTTCC
T ss_pred             --ECCCCccCCcCC--------hhhhhhccCCCCCEEECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcccccCC
Confidence              222222210000        0001122333444444444332222211   338889999999999988888888999


Q ss_pred             CCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCcccEEeeccCCCccCCCCCCC
Q 002284          321 SLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHL  400 (943)
Q Consensus       321 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l  400 (943)
                      +|++|++++|...+.++..+..      +++|++|++++|.. ...    .+..  .+++|++|++++ +++++.+|..+
T Consensus       224 ~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~L~Ls~n~l-~~~----~~~~--~l~~L~~L~L~~-n~l~~~ip~~~  289 (768)
T 3rgz_A          224 ALQHLDISGNKLSGDFSRAIST------CTELKLLNISSNQF-VGP----IPPL--PLKSLQYLSLAE-NKFTGEIPDFL  289 (768)
T ss_dssp             SCCEEECCSSCCCSCHHHHTTT------CSSCCEEECCSSCC-EES----CCCC--CCTTCCEEECCS-SEEEESCCCCS
T ss_pred             CCCEEECcCCcCCCcccHHHhc------CCCCCEEECCCCcc-cCc----cCcc--ccCCCCEEECcC-CccCCccCHHH
Confidence            9999999998755444443333      77777777777742 211    2221  567777777777 46666666644


Q ss_pred             CCccEEEEeccCCCCccceEEeccCCceeeeccCcccchhhhccccccccCCCccccCCCCceeeeeEeecCccccccch
Q 002284          401 TLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNE  480 (943)
Q Consensus       401 ~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~  480 (943)
                                ...+++|++|++++|.                      +++                           ..
T Consensus       290 ----------~~~~~~L~~L~Ls~n~----------------------l~~---------------------------~~  310 (768)
T 3rgz_A          290 ----------SGACDTLTGLDLSGNH----------------------FYG---------------------------AV  310 (768)
T ss_dssp             ----------CTTCTTCSEEECCSSE----------------------EEE---------------------------CC
T ss_pred             ----------HhhcCcCCEEECcCCc----------------------CCC---------------------------cc
Confidence                      1223555555555444                      221                           11


Q ss_pred             hhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCC-CcCeeeccCCCCCcccCCC
Q 002284          481 TQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLS-SLTEMRIHNCSSLVSFPEA  559 (943)
Q Consensus       481 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~n~~l~~~~~~  559 (943)
                      +..+..+++|++|++++|.....++...   +..+++|++|++++|.+.+.+|..+..++ +|++|++++|...+.++..
T Consensus       311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~---l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~  387 (768)
T 3rgz_A          311 PPFFGSCSLLESLALSSNNFSGELPMDT---LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN  387 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSEEEEECCHHH---HTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT
T ss_pred             chHHhcCCCccEEECCCCcccCcCCHHH---HhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh
Confidence            2233444555555555553222333332   45555555555555555555555555554 5666666655544333332


Q ss_pred             CC---CCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCc-CCCCCCceEEeccCcCccccccccCcc
Q 002284          560 VL---PSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGV-QLPPSLKQLEIYNCDNLRTLTAEEGIH  635 (943)
Q Consensus       560 ~~---~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~~~~L~~l~~~~~~~  635 (943)
                      ..   +++|++|++++|...+.+|..+  .++++|++|++++|.+.+.+|.. ...++|+.|++++|.-...++.     
T Consensus       388 ~~~~~~~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-----  460 (768)
T 3rgz_A          388 LCQNPKNTLQELYLQNNGFTGKIPPTL--SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ-----  460 (768)
T ss_dssp             TTCSTTCCCCEEECCSSEEEEECCGGG--GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG-----
T ss_pred             hhhcccCCccEEECCCCccccccCHHH--hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH-----
Confidence            21   3455566665555444455443  25566666666666544433322 3334455555555532222221     


Q ss_pred             cccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCc
Q 002284          636 SSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENL  715 (943)
Q Consensus       636 ~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~  715 (943)
                       .+..+                                    ++|++|++++|...+.+|..+.++++|++|++++|.+.
T Consensus       461 -~~~~l------------------------------------~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~  503 (768)
T 3rgz_A          461 -ELMYV------------------------------------KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT  503 (768)
T ss_dssp             -GGGGC------------------------------------TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             -HHcCC------------------------------------CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC
Confidence             00111                                    23444444444444444444455555555555555555


Q ss_pred             ccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCC----------------------
Q 002284          716 KMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNL----------------------  773 (943)
Q Consensus       716 ~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l----------------------  773 (943)
                      +.+|.+++.+++|++|++++|...+.+|..+..+++|+.|++++|+..+.+|..+...                      
T Consensus       504 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~  583 (768)
T 3rgz_A          504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM  583 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred             CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccc
Confidence            5555555555555555555554444455444445555555555555444554444333                      


Q ss_pred             ------------------------CCCCceeecCCCCCccccCCCCCCCCcceEEecCCcchhccccccCCCCCCCccEE
Q 002284          774 ------------------------SSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRL  829 (943)
Q Consensus       774 ------------------------~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L  829 (943)
                                              +.++.+++..+..-..+|.....+++|+.|++++|.....++.  .++.+++|++|
T Consensus       584 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~--~l~~l~~L~~L  661 (768)
T 3rgz_A          584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK--EIGSMPYLFIL  661 (768)
T ss_dssp             CTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG--GGGGCTTCCEE
T ss_pred             cccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH--HHhccccCCEE
Confidence                                    3333334443433344555566678999999999988776665  68899999999


Q ss_pred             EecCCCCcCcccCcccccccCCCCCCccEEEeecCCCCcccccc-cCCCCCCeEeecCCCCCccCCCCCCCCccceEeec
Q 002284          830 AISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSS-ICDQNLTSLKLTNCPKLKYFPEKGLPASLLRLEIK  908 (943)
Q Consensus       830 ~l~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~C~~L~~~~~~~l~~sL~~L~i~  908 (943)
                      ++++ +.....+|...     ..+++|+.|+++++.--..+|.. ..++.|+.|++++++--..+|..+...++....+.
T Consensus       662 ~Ls~-N~l~g~ip~~l-----~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~  735 (768)
T 3rgz_A          662 NLGH-NDISGSIPDEV-----GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL  735 (768)
T ss_dssp             ECCS-SCCCSCCCGGG-----GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGC
T ss_pred             eCcC-CccCCCCChHH-----hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhc
Confidence            9999 34445777655     36788999999996533356644 26789999999997655677877777777777888


Q ss_pred             CCchH
Q 002284          909 KCPLI  913 (943)
Q Consensus       909 ~C~~l  913 (943)
                      ++|.+
T Consensus       736 gN~~L  740 (768)
T 3rgz_A          736 NNPGL  740 (768)
T ss_dssp             SCTEE
T ss_pred             CCchh
Confidence            88875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.9e-42  Score=413.32  Aligned_cols=83  Identities=23%  Similarity=0.259  Sum_probs=63.9

Q ss_pred             cEEEecCccccccCccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHhccccCceEEcCCCC
Q 002284           92 RVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTD  170 (943)
Q Consensus        92 ~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~  170 (943)
                      +++|+++++++.+|..+.  +++++|+|++|.++.+| ..|+++++|++|++++|.+.+..|..|+++++|++|++++|.
T Consensus         7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE   84 (680)
T ss_dssp             SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred             CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence            567888888888887665  67888888888888875 467888888888888887666667778888888888888887


Q ss_pred             CCccccc
Q 002284          171 SLEEMPL  177 (943)
Q Consensus       171 ~~~~~p~  177 (943)
                       +..+|.
T Consensus        85 -l~~l~~   90 (680)
T 1ziw_A           85 -LSQLSD   90 (680)
T ss_dssp             -CCCCCT
T ss_pred             -cCccCh
Confidence             555554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.8e-42  Score=410.81  Aligned_cols=567  Identities=17%  Similarity=0.145  Sum_probs=304.7

Q ss_pred             ccchhhhccCcccEEEecCccccccC-ccccCCCCCceeecCCCccccc-chhhhhccccceeecCCCcccccccH-HHh
Q 002284           80 SILPRLLKLQRLRVFSLRGYLISEVP-DSIGDLSYLRYLNLSGTQIRTL-PESVNKLYNLHTLLLEGCRELKKKCA-DMG  156 (943)
Q Consensus        80 ~~~~~~~~l~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p~-~~~  156 (943)
                      .+|.++.  +++++|+|++|.++.+| ..|+++++|++|+|++|.++.+ |..|+++++|++|++++|. +..+|. .|+
T Consensus        18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~   94 (680)
T 1ziw_A           18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFA   94 (680)
T ss_dssp             SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred             ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhc
Confidence            4555443  67778888888777775 4577788888888888877776 5677788888888888775 344444 577


Q ss_pred             ccccCceEEcCCCCCCcccc-ccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCC
Q 002284          157 NLIKLHHLNNSNTDSLEEMP-LGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDG  235 (943)
Q Consensus       157 ~L~~L~~L~l~~n~~~~~~p-~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~  235 (943)
                      ++++|++|++++|. +..+| ..|+++++|++|+...+.                        +..      ..+..+..
T Consensus        95 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~------------------------l~~------~~~~~~~~  143 (680)
T 1ziw_A           95 FCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNG------------------------LSS------TKLGTQVQ  143 (680)
T ss_dssp             TCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSC------------------------CSC------CCCCSSSC
T ss_pred             cCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCc------------------------ccc------cCchhhcc
Confidence            88888888888777 44444 346666666655221110                        000      00111333


Q ss_pred             CCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCc-ccCCCCcCCeeEEEEeCCCCCCCCC
Q 002284          236 KKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPT-WLGYSLFSNLVTLKFQDCSMCTSMP  314 (943)
Q Consensus       236 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~n~~~~~~~  314 (943)
                      +++|++|++++|.++                                   .++. .+....+++|++|++++|.+.+..|
T Consensus       144 l~~L~~L~L~~n~l~-----------------------------------~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  188 (680)
T 1ziw_A          144 LENLQELLLSNNKIQ-----------------------------------ALKSEELDIFANSSLKKLELSSNQIKEFSP  188 (680)
T ss_dssp             CTTCCEEECCSSCCC-----------------------------------CBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred             cccCCEEEccCCccc-----------------------------------ccCHHHhhccccccccEEECCCCcccccCh
Confidence            444455555444432                                   2221 1111124677777777777766665


Q ss_pred             -CCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCc--ccEEeeccCCC
Q 002284          315 -SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPK--LRELHIVRCSK  391 (943)
Q Consensus       315 -~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~--L~~L~l~~c~~  391 (943)
                       .++.+++|+.|+++++............   ....++|+.|+++++. +...    .+..+..++.  |++|++++ ++
T Consensus       189 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~---~l~~~~L~~L~L~~n~-l~~~----~~~~~~~l~~~~L~~L~Ls~-n~  259 (680)
T 1ziw_A          189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCL---ELANTSIRNLSLSNSQ-LSTT----SNTTFLGLKWTNLTMLDLSY-NN  259 (680)
T ss_dssp             TGGGGSSEECEEECTTCCCHHHHHHHHHH---HHTTSCCCEEECTTSC-CCEE----CTTTTGGGGGSCCCEEECTT-SC
T ss_pred             hhhhhhhhhhhhhccccccChhhHHHHHH---HhhhccccEEEccCCc-cccc----ChhHhhccCcCCCCEEECCC-CC
Confidence             5666777777777665422111000000   0002344444444442 1111    1222333322  55555555 34


Q ss_pred             ccCCCCCCCCCccEEEEeccCCCCccceEEeccCCceeeeccCcccchhhhccccccccCCCccccCCCCceeeeeEeec
Q 002284          392 LQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIID  471 (943)
Q Consensus       392 l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~  471 (943)
                      +++..|..           +..+++|++|++++|.                      +.                     
T Consensus       260 l~~~~~~~-----------~~~l~~L~~L~L~~n~----------------------l~---------------------  285 (680)
T 1ziw_A          260 LNVVGNDS-----------FAWLPQLEYFFLEYNN----------------------IQ---------------------  285 (680)
T ss_dssp             CCEECTTT-----------TTTCTTCCEEECCSCC----------------------BS---------------------
T ss_pred             cCccCccc-----------ccCcccccEeeCCCCc----------------------cC---------------------
Confidence            43222221           2233333333333332                      22                     


Q ss_pred             CccccccchhhhhhcccccCeEEeecCCCcc-----cchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeee
Q 002284          472 GLSYIWQNETQLLQDIATLKRLKIERCPKLQ-----FLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMR  546 (943)
Q Consensus       472 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-----~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  546 (943)
                            ...+..+.++++|+.|++++|..-.     .++......|..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus       286 ------~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  359 (680)
T 1ziw_A          286 ------HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS  359 (680)
T ss_dssp             ------EECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEE
T ss_pred             ------ccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEE
Confidence                  2223334455555555555432111     11110011177788899999998887777777888889999999


Q ss_pred             ccCCCC-CcccCCCCC----CCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCc--CCCCCCceEEe
Q 002284          547 IHNCSS-LVSFPEAVL----PSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGV--QLPPSLKQLEI  619 (943)
Q Consensus       547 L~~n~~-l~~~~~~~~----~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~~L~~L~l  619 (943)
                      +++|.. ...++...+    .++|+.|++++|...+..+..  +..+++|++|++++|.+.+.++..  ...++|++|++
T Consensus       360 Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L  437 (680)
T 1ziw_A          360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA--FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL  437 (680)
T ss_dssp             CTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred             CCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh--hhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence            988863 233333322    257888888888865555554  347888888888888876555432  34456666666


Q ss_pred             ccCcCccccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCc--hhhHhh
Q 002284          620 YNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKL--ESIVER  697 (943)
Q Consensus       620 ~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l--~~~~~~  697 (943)
                      ++|. +..++..                                        .+..+ ++|+.|++++|...  +.+|..
T Consensus       438 s~n~-l~~~~~~----------------------------------------~~~~~-~~L~~L~l~~n~l~~~~~~p~~  475 (680)
T 1ziw_A          438 SYNK-YLQLTRN----------------------------------------SFALV-PSLQRLMLRRVALKNVDSSPSP  475 (680)
T ss_dssp             CSCS-EEECCTT----------------------------------------TTTTC-TTCCEEECTTSCCBCTTCSSCT
T ss_pred             CCCC-cceeChh----------------------------------------hhhcC-cccccchhccccccccccCCcc
Confidence            6663 2222110                                        01111 34556666555432  344555


Q ss_pred             hcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCc---------CCccccccceeeeccccCCccCCC
Q 002284          698 LDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPE---------GGLLSAKLKRLVIYGCKKLEALPE  768 (943)
Q Consensus       698 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~---------~~~~l~~L~~L~l~~~~~l~~~p~  768 (943)
                      +.++++|+.|++++|.+.+..|..+.++++|++|++++|.. ..++.         .+..+++|+.|++++|... .+|.
T Consensus       476 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~  553 (680)
T 1ziw_A          476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL-ARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPV  553 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-GGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred             cccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCc-cccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCH
Confidence            66666677777776666665555566667777777776643 22211         1344566666666666533 4443


Q ss_pred             -cCCCCCCCCceeecCCCCCccccCCC-CCCCCcceEEecCCcchhccccccCCC-CCCCccEEEecC
Q 002284          769 -GMHNLSSLQYLTIGGVPSLLCFTEDG-LFPTNLHSLEIDGMKIWKSLMQLGGFH-RYTSLRRLAISG  833 (943)
Q Consensus       769 -~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~-~l~~L~~L~l~~  833 (943)
                       .|..+++|++|++++|. ++.+|.+. ..+++|+.|++++|......+.  .+. .+++|++|++++
T Consensus       554 ~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~~~~~L~~l~l~~  618 (680)
T 1ziw_A          554 EVFKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKNLITSVEKK--VFGPAFRNLTELDMRF  618 (680)
T ss_dssp             TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCCCBCCHH--HHHHHHTTCSEEECTT
T ss_pred             HHcccccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCCcCCccChh--HhcccccccCEEEccC
Confidence             35666666666666554 33444433 2345555555555543322211  122 345555555555

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=9.5e-41  Score=393.24  Aligned_cols=83  Identities=10%  Similarity=0.011  Sum_probs=54.6

Q ss_pred             cCCeeEEEEeCCCCCCC-CCCCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcc--eeecccccccccccccccC
Q 002284          296 FSNLVTLKFQDCSMCTS-MPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLE--TLHFAEMQEWEEWIPHGCS  372 (943)
Q Consensus       296 l~~L~~L~L~~n~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~l~~~~~~~~~  372 (943)
                      +++|++|++++|.+.+. .|.+..+++|++|++++|......+..+..      +++|+  .|++++|. +...    .+
T Consensus       128 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~l~L~l~~n~-l~~~----~~  196 (606)
T 3t6q_A          128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS------LQQATNLSLNLNGND-IAGI----EP  196 (606)
T ss_dssp             CTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHT------TTTCCSEEEECTTCC-CCEE----CT
T ss_pred             CCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhh------hcccceeEEecCCCc-cCcc----Ch
Confidence            67788888889988773 456667999999999999754433333333      66777  67777764 2221    12


Q ss_pred             CccccCCcccEEeeccCC
Q 002284          373 QEIEGFPKLRELHIVRCS  390 (943)
Q Consensus       373 ~~~~~~~~L~~L~l~~c~  390 (943)
                      . .....+|++|++++|.
T Consensus       197 ~-~~~~~~L~~L~l~~~~  213 (606)
T 3t6q_A          197 G-AFDSAVFQSLNFGGTQ  213 (606)
T ss_dssp             T-TTTTCEEEEEECTTCS
T ss_pred             h-HhhhccccccccCCch
Confidence            2 2334577777777764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=4.1e-41  Score=396.38  Aligned_cols=274  Identities=16%  Similarity=0.121  Sum_probs=149.1

Q ss_pred             hhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCCCC
Q 002284          484 LQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPS  563 (943)
Q Consensus       484 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~  563 (943)
                      +..+++|+.|++++|. ++.++ .    +..+++|++|++++|.+ +.+| .+ .+++|++|++++|.....+ ....++
T Consensus       281 ~~~l~~L~~L~l~~~~-~~~l~-~----l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~  350 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVS-IKYLE-D----VPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALP  350 (606)
T ss_dssp             CGGGTTCSEEEEESCC-CCCCC-C----CCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCT
T ss_pred             cccCCCCCEEEecCcc-chhhh-h----ccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-hhccCC
Confidence            3445555555555554 34444 1    56666777777777755 5666 33 6777777777777544444 223356


Q ss_pred             CccEEEEecCCCCCc--CccccccCCCCCccEEEeecCCCcccccCcCCCCCCceEEeccCcCccccccccCcccccccC
Q 002284          564 QLRVISIWDSGALKF--LPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHT  641 (943)
Q Consensus       564 ~L~~L~l~~~~~l~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~  641 (943)
                      +|++|++++|.....  .+..  +..+++|++|++++|.+..........++|+.|++++|. +...+...         
T Consensus       351 ~L~~L~ls~n~l~~~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---------  418 (606)
T 3vq2_A          351 SLSYLDLSRNALSFSGCCSYS--DLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST-LKRVTEFS---------  418 (606)
T ss_dssp             TCCEEECCSSCEEEEEECCHH--HHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSE-EESTTTTT---------
T ss_pred             CCCEEECcCCccCCCcchhhh--hccCCcccEeECCCCccccchhhccCCCCCCeeECCCCc-cCCccChh---------
Confidence            666666666663322  1333  235677777777776643322222333445555555542 11111000         


Q ss_pred             CccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcc-cccc
Q 002284          642 SLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLK-MLPH  720 (943)
Q Consensus       642 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~p~  720 (943)
                                                    ....+ ++|++|++++|...+..|..+.++++|++|++++|.+.+ .+|.
T Consensus       419 ------------------------------~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  467 (606)
T 3vq2_A          419 ------------------------------AFLSL-EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN  467 (606)
T ss_dssp             ------------------------------TTTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred             ------------------------------hhhcc-ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH
Confidence                                          01111 355666666655555555556666666666666666555 3455


Q ss_pred             cccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCC-C
Q 002284          721 GLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPT-N  799 (943)
Q Consensus       721 ~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~-~  799 (943)
                      .+..+++|++|++++|...+..|..+..+++|++|++++|...+..|..+..+++|++|++++|. ++.+|.....++ +
T Consensus       468 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~  546 (606)
T 3vq2_A          468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKS  546 (606)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTT
T ss_pred             hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhccc
Confidence            56666666666666665444445555556666666666666555556666666666666666655 445555433333 4


Q ss_pred             cceEEecCCcch
Q 002284          800 LHSLEIDGMKIW  811 (943)
Q Consensus       800 L~~L~l~~c~~l  811 (943)
                      |++|++++|+..
T Consensus       547 L~~l~l~~N~~~  558 (606)
T 3vq2_A          547 LAFFNLTNNSVA  558 (606)
T ss_dssp             CCEEECCSCCCC
T ss_pred             CcEEEccCCCcc
Confidence            666666665543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.7e-40  Score=391.19  Aligned_cols=107  Identities=17%  Similarity=0.187  Sum_probs=81.3

Q ss_pred             hccchhhhccCcccEEEecCcccccc-CccccCCCCCceeecCCCccccc-chhhhhccccceeecCCCcccccccHHHh
Q 002284           79 RSILPRLLKLQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTL-PESVNKLYNLHTLLLEGCRELKKKCADMG  156 (943)
Q Consensus        79 ~~~~~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p~~~~  156 (943)
                      ..+|.++.  +.+++|+|++|.++.+ |.+|+++++|++|+|++|.+..+ |.+|+++++|++|++++|.+.+..|..|+
T Consensus        25 ~~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  102 (606)
T 3t6q_A           25 NEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS  102 (606)
T ss_dssp             SSCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred             ccCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhc
Confidence            34555554  3678888888888887 67888888888888888888877 67788888888888888876676777888


Q ss_pred             ccccCceEEcCCCCCCccc-ccccccccccccc
Q 002284          157 NLIKLHHLNNSNTDSLEEM-PLGIGKLTCLLTL  188 (943)
Q Consensus       157 ~L~~L~~L~l~~n~~~~~~-p~~~~~L~~L~~L  188 (943)
                      ++++|++|++++|. +..+ |..++++++|++|
T Consensus       103 ~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L  134 (606)
T 3t6q_A          103 GPKALKHLFFIQTG-ISSIDFIPLHNQKTLESL  134 (606)
T ss_dssp             SCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEE
T ss_pred             ccccccEeeccccC-cccCCcchhccCCcccEE
Confidence            88888888888888 4444 4445555555555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=8.7e-40  Score=385.05  Aligned_cols=286  Identities=13%  Similarity=0.048  Sum_probs=166.2

Q ss_pred             cCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCCCCCccEEE
Q 002284          490 LKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVIS  569 (943)
Q Consensus       490 L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~L~  569 (943)
                      ++.+.+..+..+......    +..+++|+.|++++|.. ..+| .+..+++|++|++++|.. +.+|.. .+++|++|+
T Consensus       263 l~~l~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~-~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~  334 (606)
T 3vq2_A          263 IDEFRLTYTNDFSDDIVK----FHCLANVSAMSLAGVSI-KYLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLT  334 (606)
T ss_dssp             EEEEEECCCTTCCGGGGS----CGGGTTCSEEEEESCCC-CCCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEE
T ss_pred             Hhheeccccccccccccc----cccCCCCCEEEecCccc-hhhh-hccccccCCEEEcccccC-cccccC-CCCccceee
Confidence            445555333334333322    67788888888888865 4566 777888888888888875 777755 678888888


Q ss_pred             EecCCCCCcCccccccCCCCCccEEEeecCCCcccc--c-CcCCCCCCceEEeccCcCccccccccCcccccccCCccce
Q 002284          570 IWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYI--A-GVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLEC  646 (943)
Q Consensus       570 l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~-~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~  646 (943)
                      +++|......+    +..+++|++|++++|.+.+..  + ....+++|+.|++++|. +..++.                
T Consensus       335 l~~n~~~~~~~----~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~----------------  393 (606)
T 3vq2_A          335 LTMNKGSISFK----KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSA----------------  393 (606)
T ss_dssp             EESCSSCEECC----CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECC----------------
T ss_pred             ccCCcCccchh----hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchh----------------
Confidence            88886554442    346788888888888654321  1 11233445555555542 222220                


Q ss_pred             eeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhH-hhhcccccccEEEeeccCCcccccccccCC
Q 002284          647 LEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIV-ERLDNKISLEVIEIVSCENLKMLPHGLHKL  725 (943)
Q Consensus       647 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l  725 (943)
                                               .+..+ ++|+.|++++|...+..+ ..+.++++|++|++++|.+.+..|..+.++
T Consensus       394 -------------------------~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  447 (606)
T 3vq2_A          394 -------------------------NFMGL-EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL  447 (606)
T ss_dssp             -------------------------CCTTC-TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred             -------------------------hccCC-CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC
Confidence                                     01111 345666666655444444 345566666666666666666666666666


Q ss_pred             CCccEEeccCCCCCc-ccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceEE
Q 002284          726 WHLQEIDIQDCENLV-SFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLE  804 (943)
Q Consensus       726 ~~L~~L~l~~~~~l~-~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~  804 (943)
                      ++|++|++++|...+ .+|..+..+++|++|++++|...+..|..+..+++|++|++++|......|.....+++|++|+
T Consensus       448 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  527 (606)
T 3vq2_A          448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD  527 (606)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEE
Confidence            666666666664444 2455555566666666666665555555666666666666666654444444444455666666


Q ss_pred             ecCCcchhccccccCCCCCC-CccEEEecC
Q 002284          805 IDGMKIWKSLMQLGGFHRYT-SLRRLAISG  833 (943)
Q Consensus       805 l~~c~~l~~~~~~~~~~~l~-~L~~L~l~~  833 (943)
                      +++|... .++.  .+..++ +|++|++++
T Consensus       528 l~~N~l~-~~p~--~~~~l~~~L~~l~l~~  554 (606)
T 3vq2_A          528 CSFNRIE-TSKG--ILQHFPKSLAFFNLTN  554 (606)
T ss_dssp             CTTSCCC-CEES--CGGGSCTTCCEEECCS
T ss_pred             CCCCcCc-ccCH--hHhhhcccCcEEEccC
Confidence            6666533 2222  244444 356666655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=9.7e-37  Score=370.45  Aligned_cols=518  Identities=15%  Similarity=0.099  Sum_probs=268.5

Q ss_pred             cCcccEEEecCcccccc-CccccCCCCCceeecCCC-ccccc-chhhhhccccceeecCCCcccccccHHHhccccCceE
Q 002284           88 LQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGT-QIRTL-PESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHL  164 (943)
Q Consensus        88 l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n-~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L  164 (943)
                      .+++++|||++|.++.+ |.+|.++++|++|+|++| .+..+ |.+|+++++|++|+|++|.+.+..|..|+++++|++|
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            46677777777777665 566777777777777777 34455 5667777777777777776555556667777777777


Q ss_pred             EcCCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEE
Q 002284          165 NNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLML  244 (943)
Q Consensus       165 ~l~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l  244 (943)
                      ++++|.+.+.+|..                                                    ..+..+++|+.|++
T Consensus       103 ~Ls~n~l~~~~~~~----------------------------------------------------~~~~~L~~L~~L~L  130 (844)
T 3j0a_A          103 RLYFCGLSDAVLKD----------------------------------------------------GYFRNLKALTRLDL  130 (844)
T ss_dssp             ECTTCCCSSCCSTT----------------------------------------------------CCCSSCSSCCEEEE
T ss_pred             eCcCCCCCcccccC----------------------------------------------------ccccccCCCCEEEC
Confidence            77777633323321                                                    01334455556666


Q ss_pred             EeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCC--CC
Q 002284          245 EWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQL--PS  321 (943)
Q Consensus       245 ~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l--~~  321 (943)
                      ++|.++..                                 ..+..+.  .+++|++|++++|.+.+..+ .++.+  ++
T Consensus       131 s~N~l~~~---------------------------------~~~~~~~--~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~  175 (844)
T 3j0a_A          131 SKNQIRSL---------------------------------YLHPSFG--KLNSLKSIDFSSNQIFLVCEHELEPLQGKT  175 (844)
T ss_dssp             ESCCCCCC---------------------------------CCCGGGG--TCSSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred             CCCccccc---------------------------------ccchhHh--hCCCCCEEECCCCcCCeeCHHHcccccCCc
Confidence            65554211                                 1122333  37888888888888877666 55555  78


Q ss_pred             CCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCcccEEeeccCCCccCCCCCCCC
Q 002284          322 LKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLT  401 (943)
Q Consensus       322 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~  401 (943)
                      |+.|++++|......+..+..      +                      +..+. ...|++|++++ +++++.+|..+.
T Consensus       176 L~~L~L~~n~l~~~~~~~~~~------~----------------------~~~~~-~~~L~~L~Ls~-n~l~~~~~~~~~  225 (844)
T 3j0a_A          176 LSFFSLAANSLYSRVSVDWGK------C----------------------MNPFR-NMVLEILDVSG-NGWTVDITGNFS  225 (844)
T ss_dssp             SCCCEECCSBSCCCCCCCCCS------S----------------------SCTTT-TCCBSEEBCSS-CCSSTTTTSGGG
T ss_pred             cceEECCCCccccccccchhh------c----------------------CCccc-cCceeEEecCC-CcCchhHHHHHH
Confidence            888888887643322211111      0                      00111 12477777777 466655554332


Q ss_pred             CccEEEEeccCCCCccceEEeccCCceeeeccCcccchhhhccccccccCCCccccCCCCceeeeeEeecCccccccchh
Q 002284          402 LLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNET  481 (943)
Q Consensus       402 ~L~~L~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~  481 (943)
                      ..        .....++.+.+..+....             +...+.+                           .....
T Consensus       226 ~~--------l~~~~l~~L~l~~~~~~~-------------~~~~~~l---------------------------~~~~~  257 (844)
T 3j0a_A          226 NA--------ISKSQAFSLILAHHIMGA-------------GFGFHNI---------------------------KDPDQ  257 (844)
T ss_dssp             GT--------SCSCCBSEEECCSSCCBC-------------SSSCSSS---------------------------TTGGG
T ss_pred             hh--------cCcccccceecccccccc-------------ccccccc---------------------------CCCCh
Confidence            11        112334444444221100             0001111                           11111


Q ss_pred             hhhhcc--cccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCC
Q 002284          482 QLLQDI--ATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEA  559 (943)
Q Consensus       482 ~~~~~l--~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~  559 (943)
                      ..+.++  ++|+.|++++|. +..+....   |..+++|+.|++++|.+.+..|..+..+++|++|++++|......+..
T Consensus       258 ~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  333 (844)
T 3j0a_A          258 NTFAGLARSSVRHLDLSHGF-VFSLNSRV---FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN  333 (844)
T ss_dssp             TTTTTTTTSCCCEEECTTCC-CCEECSCC---SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred             hhhhccccCCccEEECCCCc-ccccChhh---hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence            112221  344444444443 22222221   444555555555555444444444555555555555555422211211


Q ss_pred             -CCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCcCCCCCCceEEeccCcCccccccccCccccc
Q 002284          560 -VLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSR  638 (943)
Q Consensus       560 -~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~  638 (943)
                       ..+++|+.|++++|.. ..++... +.++++|++|++++|.+.+ ++   .+++|+.|+++++ ++..++.        
T Consensus       334 ~~~l~~L~~L~L~~N~i-~~~~~~~-~~~l~~L~~L~Ls~N~l~~-i~---~~~~L~~L~l~~N-~l~~l~~--------  398 (844)
T 3j0a_A          334 FYGLPKVAYIDLQKNHI-AIIQDQT-FKFLEKLQTLDLRDNALTT-IH---FIPSIPDIFLSGN-KLVTLPK--------  398 (844)
T ss_dssp             CSSCTTCCEEECCSCCC-CCCCSSC-SCSCCCCCEEEEETCCSCC-CS---SCCSCSEEEEESC-CCCCCCC--------
T ss_pred             hcCCCCCCEEECCCCCC-CccChhh-hcCCCCCCEEECCCCCCCc-cc---CCCCcchhccCCC-Ccccccc--------
Confidence             1144555555555542 2222211 2345555666665554321 11   1344555555554 2222220        


Q ss_pred             ccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCch-hhHhhhcccccccEEEeeccCCccc
Q 002284          639 RHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLE-SIVERLDNKISLEVIEIVSCENLKM  717 (943)
Q Consensus       639 ~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~  717 (943)
                                                           .+.+++.|++++|.... ..+..+.++++|+.|++++|.+.+.
T Consensus       399 -------------------------------------~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~  441 (844)
T 3j0a_A          399 -------------------------------------INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC  441 (844)
T ss_dssp             -------------------------------------CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCC
T ss_pred             -------------------------------------cccccceeecccCccccCchhhhhhcCCccceeeCCCCccccc
Confidence                                                 01245555555544322 1122345666777777777766554


Q ss_pred             ccc-cccCCCCccEEeccCCCCC-----cccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCcccc
Q 002284          718 LPH-GLHKLWHLQEIDIQDCENL-----VSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFT  791 (943)
Q Consensus       718 ~p~-~~~~l~~L~~L~l~~~~~l-----~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~  791 (943)
                      .+. .+..+++|++|++++|...     +..+..+..+++|+.|++++|...+..|..+..+++|++|++++|. ++.++
T Consensus       442 ~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~  520 (844)
T 3j0a_A          442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR-LTVLS  520 (844)
T ss_dssp             CSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCC-CSSCC
T ss_pred             ccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCC-CCccC
Confidence            332 2445677777777777443     1222335556777777777777666556667777777777777764 55555


Q ss_pred             CCCCCCCCcceEEecCCcchhccccccCCCCCCCccEEEecC
Q 002284          792 EDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISG  833 (943)
Q Consensus       792 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~  833 (943)
                      .... .++|+.|++++|......+.     .+++|+.|++++
T Consensus       521 ~~~~-~~~L~~L~Ls~N~l~~~~~~-----~~~~L~~l~l~~  556 (844)
T 3j0a_A          521 HNDL-PANLEILDISRNQLLAPNPD-----VFVSLSVLDITH  556 (844)
T ss_dssp             CCCC-CSCCCEEEEEEECCCCCCSC-----CCSSCCEEEEEE
T ss_pred             hhhh-hccccEEECCCCcCCCCChh-----HhCCcCEEEecC
Confidence            5554 37777777777765544332     245677777765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.3e-37  Score=373.54  Aligned_cols=126  Identities=23%  Similarity=0.306  Sum_probs=102.3

Q ss_pred             ccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCcc-cccc-CccccCCCCCceeecCCCccccc-chhhhh
Q 002284           57 DIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYL-ISEV-PDSIGDLSYLRYLNLSGTQIRTL-PESVNK  133 (943)
Q Consensus        57 ~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-i~~l-p~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~  133 (943)
                      -.+++++|.+..      |.+.+..|.++.++++|++|+|++|. +..+ |.+|+++++|++|+|++|.|..+ |.+|++
T Consensus        22 lp~~l~~LdLs~------N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~   95 (844)
T 3j0a_A           22 VLNTTERLLLSF------NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG   95 (844)
T ss_dssp             SCTTCCEEEEES------CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred             CCCCcCEEECCC------CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence            347899997754      45565556666699999999999995 6677 78899999999999999999988 789999


Q ss_pred             ccccceeecCCCcccccccHH--HhccccCceEEcCCCCCCcccc-cccccccccccc
Q 002284          134 LYNLHTLLLEGCRELKKKCAD--MGNLIKLHHLNNSNTDSLEEMP-LGIGKLTCLLTL  188 (943)
Q Consensus       134 L~~L~~L~L~~n~~~~~~p~~--~~~L~~L~~L~l~~n~~~~~~p-~~~~~L~~L~~L  188 (943)
                      +++|++|+|++|.+.+..|..  |+++++|++|++++|.+.+..| ..|+++++|++|
T Consensus        96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L  153 (844)
T 3j0a_A           96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI  153 (844)
T ss_dssp             CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred             CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence            999999999999877766665  9999999999999998433323 346666666555

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-36  Score=351.43  Aligned_cols=94  Identities=22%  Similarity=0.224  Sum_probs=67.4

Q ss_pred             hccchhhhccCcccEEEecCcccccc-CccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHh
Q 002284           79 RSILPRLLKLQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMG  156 (943)
Q Consensus        79 ~~~~~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~  156 (943)
                      ..+|..+.  +++++|++++|.++.+ +.+|.++++|++|+|++|+++.+| ..|+++++|++|++++|.+.+..|..|+
T Consensus        20 ~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   97 (570)
T 2z63_A           20 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS   97 (570)
T ss_dssp             SSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred             cccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc
Confidence            34555443  4677888888887776 456788888888888888887774 5677888888888888765555556688


Q ss_pred             ccccCceEEcCCCCCCccc
Q 002284          157 NLIKLHHLNNSNTDSLEEM  175 (943)
Q Consensus       157 ~L~~L~~L~l~~n~~~~~~  175 (943)
                      ++++|++|++++|. +..+
T Consensus        98 ~l~~L~~L~L~~n~-l~~l  115 (570)
T 2z63_A           98 GLSSLQKLVAVETN-LASL  115 (570)
T ss_dssp             TCTTCCEEECTTSC-CCCS
T ss_pred             Cccccccccccccc-cccC
Confidence            88888888888776 4443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-35  Score=347.79  Aligned_cols=123  Identities=23%  Similarity=0.219  Sum_probs=81.5

Q ss_pred             ccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCcccccc-CccccCCCCCceeecCCCcccccc-hhhhhccc
Q 002284           59 QHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYN  136 (943)
Q Consensus        59 ~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~  136 (943)
                      +++++|.+.+      |.+.+..+..|.++++|++|+|++|.++.+ |..|+++++||+|+|++|.++.+| .+|+++++
T Consensus        28 ~~l~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (570)
T 2z63_A           28 FSTKNLDLSF------NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  101 (570)
T ss_dssp             SSCCEEECCS------CCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             ccccEEEccC------CccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence            3566665533      344433334445777888888887777776 456777778888888888777774 56777788


Q ss_pred             cceeecCCCcccccccH-HHhccccCceEEcCCCCCCc-ccccccccccccccc
Q 002284          137 LHTLLLEGCRELKKKCA-DMGNLIKLHHLNNSNTDSLE-EMPLGIGKLTCLLTL  188 (943)
Q Consensus       137 L~~L~L~~n~~~~~~p~-~~~~L~~L~~L~l~~n~~~~-~~p~~~~~L~~L~~L  188 (943)
                      |++|++++|. +..+|. .|+++++|++|++++|.+.. .+|..++++++|++|
T Consensus       102 L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L  154 (570)
T 2z63_A          102 LQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  154 (570)
T ss_dssp             CCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             cccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEE
Confidence            8888887775 333333 47777788888887777333 356666666666655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=9.5e-37  Score=357.66  Aligned_cols=124  Identities=15%  Similarity=0.150  Sum_probs=87.8

Q ss_pred             ccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCccccccC---------------------------------
Q 002284           59 QHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVP---------------------------------  105 (943)
Q Consensus        59 ~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp---------------------------------  105 (943)
                      .+++.|.+      +++.+.+.+|+++.++++|++|+|++|.+..-+                                 
T Consensus        81 ~~V~~L~L------~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~  154 (636)
T 4eco_A           81 GRVTGLSL------EGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDP  154 (636)
T ss_dssp             CCEEEEEC------TTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCG
T ss_pred             CCEEEEEe------cCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCc
Confidence            35666654      344667888888888888888888888642111                                 


Q ss_pred             -cccc-------------------CCCCCceeecC--CCcccccchhhhhccccceeecCCCccccc-------------
Q 002284          106 -DSIG-------------------DLSYLRYLNLS--GTQIRTLPESVNKLYNLHTLLLEGCRELKK-------------  150 (943)
Q Consensus       106 -~~~~-------------------~l~~L~~L~Ls--~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~-------------  150 (943)
                       ..+.                   ....++.+.+.  +|+++.||++|+++++|++|+|++|.+.+.             
T Consensus       155 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~  234 (636)
T 4eco_A          155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY  234 (636)
T ss_dssp             GGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred             hhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccch
Confidence             1111                   11122222222  567778888899999999999999876664             


Q ss_pred             ----ccHHHh--ccccCceEEcCCCCCCcccccccccccccccc
Q 002284          151 ----KCADMG--NLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTL  188 (943)
Q Consensus       151 ----~p~~~~--~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L  188 (943)
                          +|..++  ++++|++|++++|.+.+.+|..++++++|++|
T Consensus       235 ~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  278 (636)
T 4eco_A          235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI  278 (636)
T ss_dssp             HHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred             hcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence                888888  99999999999998888888878777777766

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.1e-35  Score=343.45  Aligned_cols=210  Identities=19%  Similarity=0.150  Sum_probs=148.1

Q ss_pred             hccchhhhccCcccEEEecCcccccc-CccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHh
Q 002284           79 RSILPRLLKLQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMG  156 (943)
Q Consensus        79 ~~~~~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~  156 (943)
                      ..+|++++  ++|++|++++|.++.+ |.+|+++++|++|+|++|+++.+| .+|+++++|++|++++|.+.+..|..|+
T Consensus        18 ~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~   95 (549)
T 2z81_A           18 TSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG   95 (549)
T ss_dssp             SSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred             ccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence            46677665  7899999999999887 678999999999999999999885 6899999999999999986666666699


Q ss_pred             ccccCceEEcCCCCCCc-cccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCC
Q 002284          157 NLIKLHHLNNSNTDSLE-EMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDG  235 (943)
Q Consensus       157 ~L~~L~~L~l~~n~~~~-~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~  235 (943)
                      ++++|++|++++|.+.+ .+|..++++++|++|+...+...                             .......+.+
T Consensus        96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~-----------------------------~~~~~~~~~~  146 (549)
T 2z81_A           96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF-----------------------------SEIRRIDFAG  146 (549)
T ss_dssp             TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-----------------------------CEECTTTTTT
T ss_pred             cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccc-----------------------------cccCHhhhhc
Confidence            99999999999998333 34667888888887744332100                             0011123666


Q ss_pred             CCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCC--
Q 002284          236 KKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSM--  313 (943)
Q Consensus       236 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~--  313 (943)
                      +++|+.|++++|.+++.           ....+..+++|+.|+++++....+|.++. ..+++|++|++++|.+.+..  
T Consensus       147 l~~L~~L~L~~n~l~~~-----------~~~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~  214 (549)
T 2z81_A          147 LTSLNELEIKALSLRNY-----------QSQSLKSIRDIHHLTLHLSESAFLLEIFA-DILSSVRYLELRDTNLARFQFS  214 (549)
T ss_dssp             CCEEEEEEEEETTCCEE-----------CTTTTTTCSEEEEEEEECSBSTTHHHHHH-HSTTTBSEEEEESCBCTTCCCC
T ss_pred             ccccCeeeccCCccccc-----------ChhhhhccccCceEecccCcccccchhhH-hhcccccEEEccCCcccccccc
Confidence            77888888888877422           22345566677777777766666665543 23667777777777765531  


Q ss_pred             --CCCCCCCCCCeeEEecCc
Q 002284          314 --PSVGQLPSLKHLEVRGMS  331 (943)
Q Consensus       314 --~~~~~l~~L~~L~L~~~~  331 (943)
                        +....+++|+.|++++|.
T Consensus       215 ~~~~~~~~~~L~~L~l~~n~  234 (549)
T 2z81_A          215 PLPVDEVSSPMKKLAFRGSV  234 (549)
T ss_dssp             CCSSCCCCCCCCEEEEESCE
T ss_pred             ccchhhhhhcccceeccccc
Confidence              123345566666666654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.2e-34  Score=334.80  Aligned_cols=483  Identities=16%  Similarity=0.131  Sum_probs=271.1

Q ss_pred             CcccEEEecCccccccCccccCCCCCceeecCCCccccc-chhhhhccccceeecCCCcccccccHHHhccccCceEEcC
Q 002284           89 QRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTL-PESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNS  167 (943)
Q Consensus        89 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~  167 (943)
                      +...+.|.+++.++.+|..+.  ++|++|+|++|+++.+ |.+|+++++|++|++++|.+.+..|..|+++++|++|+++
T Consensus         5 ~~~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls   82 (549)
T 2z81_A            5 DASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS   82 (549)
T ss_dssp             CTTSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCCceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence            444557888999999998775  7999999999999988 5789999999999999998767667789999999999999


Q ss_pred             CCCCCcccccc-ccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEe
Q 002284          168 NTDSLEEMPLG-IGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEW  246 (943)
Q Consensus       168 ~n~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  246 (943)
                      +|. +..+|.. |+++++|+                                                      +|++++
T Consensus        83 ~n~-l~~~~~~~~~~l~~L~------------------------------------------------------~L~Ls~  107 (549)
T 2z81_A           83 DNH-LSSLSSSWFGPLSSLK------------------------------------------------------YLNLMG  107 (549)
T ss_dssp             TSC-CCSCCHHHHTTCTTCC------------------------------------------------------EEECTT
T ss_pred             CCc-cCccCHHHhccCCCCc------------------------------------------------------EEECCC
Confidence            998 4444432 44444433                                                      333333


Q ss_pred             ecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC--CCCCCCCCCe
Q 002284          247 TRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP--SVGQLPSLKH  324 (943)
Q Consensus       247 n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~l~~L~~  324 (943)
                      |.++.                                 ...|..+.  .+++|++|++++|...+.+|  .++.+++|++
T Consensus       108 n~l~~---------------------------------~~~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  152 (549)
T 2z81_A          108 NPYQT---------------------------------LGVTSLFP--NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE  152 (549)
T ss_dssp             CCCSS---------------------------------SCSSCSCT--TCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred             Ccccc---------------------------------cchhhhhh--ccCCccEEECCCCccccccCHhhhhcccccCe
Confidence            33310                                 01122232  26777777777777444443  6777778888


Q ss_pred             eEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCcccEEeeccCCCccCCC--CCCCCC
Q 002284          325 LEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTL--PTHLTL  402 (943)
Q Consensus       325 L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--p~~l~~  402 (943)
                      |++++|......+..+..      +++|++|+++.+.. .. .   ....+..+++|++|++++ +++++..  |..+  
T Consensus       153 L~L~~n~l~~~~~~~l~~------l~~L~~L~l~~n~~-~~-~---~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~--  218 (549)
T 2z81_A          153 LEIKALSLRNYQSQSLKS------IRDIHHLTLHLSES-AF-L---LEIFADILSSVRYLELRD-TNLARFQFSPLPV--  218 (549)
T ss_dssp             EEEEETTCCEECTTTTTT------CSEEEEEEEECSBS-TT-H---HHHHHHSTTTBSEEEEES-CBCTTCCCCCCSS--
T ss_pred             eeccCCcccccChhhhhc------cccCceEecccCcc-cc-c---chhhHhhcccccEEEccC-Cccccccccccch--
Confidence            888777644433332222      45555555554431 00 0   000112345555555555 3443210  0000  


Q ss_pred             ccEEEEeccCCCCccceEEeccCCceeeeccCcccchhhhccccccccCCCccccCCCCceeeeeEeecCccccccchhh
Q 002284          403 LDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQ  482 (943)
Q Consensus       403 L~~L~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~  482 (943)
                              ..                                            .+++|+.|+++               
T Consensus       219 --------~~--------------------------------------------~~~~L~~L~l~---------------  231 (549)
T 2z81_A          219 --------DE--------------------------------------------VSSPMKKLAFR---------------  231 (549)
T ss_dssp             --------CC--------------------------------------------CCCCCCEEEEE---------------
T ss_pred             --------hh--------------------------------------------hhhcccceecc---------------
Confidence                    01                                            12223333332               


Q ss_pred             hhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCc------cchhccCCCCcCeeeccCCCCCccc
Q 002284          483 LLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEK------LPKSLLSLSSLTEMRIHNCSSLVSF  556 (943)
Q Consensus       483 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~------~~~~~~~l~~L~~L~L~~n~~l~~~  556 (943)
                                    +|......+......+..+++|+.+++++|...+.      ....+..+++|+.|++.++......
T Consensus       232 --------------~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~  297 (549)
T 2z81_A          232 --------------GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY  297 (549)
T ss_dssp             --------------SCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG
T ss_pred             --------------ccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhh
Confidence                          22100000000000023344455555555433221      0112344566666666665422111


Q ss_pred             CCC------CCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCcCCCCCCceEEeccCcCcccccc
Q 002284          557 PEA------VLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTA  630 (943)
Q Consensus       557 ~~~------~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~  630 (943)
                      ...      ...++|+.|++++|. ++.+|..+ ++.+++|++|++++|.+.+.++...                     
T Consensus       298 ~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~---------------------  354 (549)
T 2z81_A          298 LFYDLSTVYSLLEKVKRITVENSK-VFLVPCSF-SQHLKSLEFLDLSENLMVEEYLKNS---------------------  354 (549)
T ss_dssp             GSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHH-HHHCTTCCEEECCSSCCCHHHHHHH---------------------
T ss_pred             hcccchhhhhhcccceEEEeccCc-cccCCHHH-HhcCccccEEEccCCccccccccch---------------------
Confidence            000      113456666666665 44555443 1246666666666666544322100                     


Q ss_pred             ccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhh--HhhhcccccccEEE
Q 002284          631 EEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESI--VERLDNKISLEVIE  708 (943)
Q Consensus       631 ~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~L~  708 (943)
                        .                                      ..+.+ ++|+.|++++|...+..  +..+..+++|++|+
T Consensus       355 --~--------------------------------------~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~  393 (549)
T 2z81_A          355 --A--------------------------------------CKGAW-PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD  393 (549)
T ss_dssp             --T--------------------------------------CTTSS-TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEE
T ss_pred             --h--------------------------------------hhhcc-ccCcEEEccCCcccccccchhhhhcCCCCCEEE
Confidence              0                                      00111 34666666665433221  13466777788888


Q ss_pred             eeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCc
Q 002284          709 IVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLL  788 (943)
Q Consensus       709 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~  788 (943)
                      +++|.+. .+|..+..+++|++|++++|. +..+|..+.  ++|++|++++|...+. +   ..+++|++|++++|. ++
T Consensus       394 Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~--~~L~~L~Ls~N~l~~~-~---~~l~~L~~L~Ls~N~-l~  464 (549)
T 2z81_A          394 ISRNTFH-PMPDSCQWPEKMRFLNLSSTG-IRVVKTCIP--QTLEVLDVSNNNLDSF-S---LFLPRLQELYISRNK-LK  464 (549)
T ss_dssp             CTTCCCC-CCCSCCCCCTTCCEEECTTSC-CSCCCTTSC--TTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSC-CS
T ss_pred             CCCCCCc-cCChhhcccccccEEECCCCC-cccccchhc--CCceEEECCCCChhhh-c---ccCChhcEEECCCCc-cC
Confidence            8877655 567777778888888888884 555655432  4788888888765442 2   467788888888875 45


Q ss_pred             cccCCCCCCCCcceEEecCCcchhccccccCCCCCCCccEEEecCC
Q 002284          789 CFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGC  834 (943)
Q Consensus       789 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  834 (943)
                      .+|.. ..+++|++|++++|......+  ..+..+++|++|+++++
T Consensus       465 ~ip~~-~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~l~~N  507 (549)
T 2z81_A          465 TLPDA-SLFPVLLVMKISRNQLKSVPD--GIFDRLTSLQKIWLHTN  507 (549)
T ss_dssp             SCCCG-GGCTTCCEEECCSSCCCCCCT--TGGGGCTTCCEEECCSS
T ss_pred             cCCCc-ccCccCCEEecCCCccCCcCH--HHHhcCcccCEEEecCC
Confidence            66653 336777777777776544332  24566777777777773

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.1e-34  Score=329.79  Aligned_cols=112  Identities=15%  Similarity=0.068  Sum_probs=59.3

Q ss_pred             HhhhcccccccEEEeeccCCccccccc-ccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCC
Q 002284          695 VERLDNKISLEVIEIVSCENLKMLPHG-LHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNL  773 (943)
Q Consensus       695 ~~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l  773 (943)
                      |..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|...+.+|..+.  ++|+.|++++|. +..+|.++..+
T Consensus       367 ~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l  443 (520)
T 2z7x_B          367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKL  443 (520)
T ss_dssp             HHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGC
T ss_pred             hHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcC
Confidence            344455555555555555555544432 45556666666666654444444332  456666666654 33555555566


Q ss_pred             CCCCceeecCCCCCccccCC-CCCCCCcceEEecCCcc
Q 002284          774 SSLQYLTIGGVPSLLCFTED-GLFPTNLHSLEIDGMKI  810 (943)
Q Consensus       774 ~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~  810 (943)
                      ++|++|++++|. ++.+|.. ...+++|++|++++|+.
T Consensus       444 ~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          444 EALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCCEEECCCCc-CCccCHHHhccCCcccEEECcCCCC
Confidence            666666666654 3345544 23345555555555553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=6.7e-34  Score=337.47  Aligned_cols=207  Identities=14%  Similarity=0.092  Sum_probs=129.7

Q ss_pred             ccccEEeecccCCCCCCcchhccchhhhccCcccEEEe-cCcccccc-Cc------------------------------
Q 002284           59 QHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSL-RGYLISEV-PD------------------------------  106 (943)
Q Consensus        59 ~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L-~~n~i~~l-p~------------------------------  106 (943)
                      .++..|.+      +++.+.+.+|+++.++++|++|+| ++|.+... |-                              
T Consensus       323 ~~V~~L~L------s~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~  396 (876)
T 4ecn_A          323 GRVTGLSL------AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQ  396 (876)
T ss_dssp             SCEEEEEC------TTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCG
T ss_pred             CCEEEEEC------ccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCc
Confidence            35666654      345678888888889999999999 66654221 10                              


Q ss_pred             ---------------------cccCCCCCceeecCC--CcccccchhhhhccccceeecCCCcccc--------------
Q 002284          107 ---------------------SIGDLSYLRYLNLSG--TQIRTLPESVNKLYNLHTLLLEGCRELK--------------  149 (943)
Q Consensus       107 ---------------------~~~~l~~L~~L~Ls~--n~i~~lp~~i~~L~~L~~L~L~~n~~~~--------------  149 (943)
                                           .......++.+.+..  |+++.||.+|+++++|++|+|++|.+.+              
T Consensus       397 ~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~  476 (876)
T 4ecn_A          397 RLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY  476 (876)
T ss_dssp             GGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred             chhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccccccc
Confidence                                 001222344444443  6777788888888888888888887666              


Q ss_pred             ---cccHHHh--ccccCceEEcCCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccC
Q 002284          150 ---KKCADMG--NLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKY  224 (943)
Q Consensus       150 ---~~p~~~~--~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~  224 (943)
                         .+|..++  ++++|++|++++|.+.+.+|..++++++|+.|+...+..                       +.    
T Consensus       477 ~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~-----------------------ls----  529 (876)
T 4ecn_A          477 AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG-----------------------IS----  529 (876)
T ss_dssp             HHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT-----------------------SC----
T ss_pred             ccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC-----------------------cc----
Confidence               3788766  888888888888887888887787777777663211100                       00    


Q ss_pred             ccchhhcccCCCCCCCeEEEEeecCCCCCCchhhhhHHhhhc-cCCCCCCcceEEEEeeCCCCCCc--ccCCCCcCCeeE
Q 002284          225 VGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLD-MLKPHRSLEQFCISGFGGKKFPT--WLGYSLFSNLVT  301 (943)
Q Consensus       225 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~-~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~  301 (943)
                       ...++..+                             ..+. .+..+++|+.|+++++....+|.  ++..  +++|++
T Consensus       530 -g~~iP~~i-----------------------------~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~--L~~L~~  577 (876)
T 4ecn_A          530 -AAQLKADW-----------------------------TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK--MVKLGL  577 (876)
T ss_dssp             -HHHHHHHH-----------------------------HHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTT--CTTCCE
T ss_pred             -cccchHHH-----------------------------HhhhhcccccCCccEEEeeCCcCCccCChhhhhc--CCCCCE
Confidence             00000000                             0111 23334455555555555556666  5543  777778


Q ss_pred             EEEeCCCCCCCCCCCCCCCCCCeeEEecCc
Q 002284          302 LKFQDCSMCTSMPSVGQLPSLKHLEVRGMS  331 (943)
Q Consensus       302 L~L~~n~~~~~~~~~~~l~~L~~L~L~~~~  331 (943)
                      |++++|.+. .+|.++.+++|+.|++++|.
T Consensus       578 L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~  606 (876)
T 4ecn_A          578 LDCVHNKVR-HLEAFGTNVKLTDLKLDYNQ  606 (876)
T ss_dssp             EECTTSCCC-BCCCCCTTSEESEEECCSSC
T ss_pred             EECCCCCcc-cchhhcCCCcceEEECcCCc
Confidence            888777776 55577777777777777775

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.5e-34  Score=338.97  Aligned_cols=188  Identities=15%  Similarity=0.212  Sum_probs=102.9

Q ss_pred             CcccEEEecCcccc-ccCccccCCCCCceeecCCCccc-------------ccchhhhhccccceeecCCCcccccccHH
Q 002284           89 QRLRVFSLRGYLIS-EVPDSIGDLSYLRYLNLSGTQIR-------------TLPESVNKLYNLHTLLLEGCRELKKKCAD  154 (943)
Q Consensus        89 ~~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~Ls~n~i~-------------~lp~~i~~L~~L~~L~L~~n~~~~~~p~~  154 (943)
                      .+++.|+|+++.+. .+|.+|++|++|++|+|++|.+.             .+|...  +.+|+ +++++|...+..|..
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence            57888888888875 56888888888888888888652             344433  55566 666665544555544


Q ss_pred             Hhc-cccCceEEcCCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhccc
Q 002284          155 MGN-LIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQL  233 (943)
Q Consensus       155 ~~~-L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l  233 (943)
                      +.. +.++..+++.... +..     .....++.+                          .+....  ..... ++..+
T Consensus       158 ~~~~~~~l~~~~l~~~~-~~~-----~~~~~l~~l--------------------------~l~~~~--n~l~~-ip~~l  202 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKS-IKK-----SSRITLKDT--------------------------QIGQLS--NNITF-VSKAV  202 (636)
T ss_dssp             SCHHHHHHHHHCTTSCC-CCC-----CCCCCCCTT--------------------------TTTCCS--CEEEE-ECGGG
T ss_pred             HHHHHHHHhhcCccccc-ccc-----ccccchhhh--------------------------hhcccc--CCCcc-CCHHH
Confidence            432 2233333332221 000     000111111                          000000  00011 34446


Q ss_pred             CCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCC
Q 002284          234 DGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSM  313 (943)
Q Consensus       234 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~  313 (943)
                      ..+++|++|++++|.+++...          ...+.+. .      ..+....+|..+....+++|++|++++|.+.+.+
T Consensus       203 ~~l~~L~~L~Ls~n~l~~~~~----------~~~~~~~-~------~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~  265 (636)
T 4eco_A          203 MRLTKLRQFYMGNSPFVAENI----------CEAWENE-N------SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL  265 (636)
T ss_dssp             GGCTTCCEEEEESCCCCGGGB----------SSSCSCT-T------SHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSC
T ss_pred             hcccCCCEEECcCCccccccc----------ccccccc-c------cchhcccCchhhhhcccCCCCEEEecCCcCCccC
Confidence            677777888887777642000          0000000 0      0000001666665113889999999999988888


Q ss_pred             C-CCCCCCCCCeeEEecCc
Q 002284          314 P-SVGQLPSLKHLEVRGMS  331 (943)
Q Consensus       314 ~-~~~~l~~L~~L~L~~~~  331 (943)
                      | .++.+++|++|++++|+
T Consensus       266 p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          266 PTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             CTTTTTCSSCCEEECTTCT
T ss_pred             hHHHhcCCCCCEEECcCCC
Confidence            8 78899999999999886

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.7e-33  Score=331.59  Aligned_cols=522  Identities=16%  Similarity=0.071  Sum_probs=272.9

Q ss_pred             hccchhhhccCcccEEEecCccccccC-ccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHh
Q 002284           79 RSILPRLLKLQRLRVFSLRGYLISEVP-DSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMG  156 (943)
Q Consensus        79 ~~~~~~~~~l~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~  156 (943)
                      ..+|+++-  +.+++|||++|.|+.+| .+|.++++||+|+|++|+|+.+| .+|++|++|++|+|++|.+.+..|..|+
T Consensus        44 ~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~  121 (635)
T 4g8a_A           44 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS  121 (635)
T ss_dssp             SSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred             CccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence            34555442  46788888888888885 57888888888888888888885 4688888888888888864333344588


Q ss_pred             ccccCceEEcCCCCCCccccc-cccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCC
Q 002284          157 NLIKLHHLNNSNTDSLEEMPL-GIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDG  235 (943)
Q Consensus       157 ~L~~L~~L~l~~n~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~  235 (943)
                      ++++|++|++++|. +..+|. .|+++++|++|+...+.                        +...     ..+..+..
T Consensus       122 ~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~------------------------l~~~-----~~~~~~~~  171 (635)
T 4g8a_A          122 GLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL------------------------IQSF-----KLPEYFSN  171 (635)
T ss_dssp             TCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC------------------------CCCC-----CCCGGGGG
T ss_pred             CCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCc------------------------cccC-----CCchhhcc
Confidence            88888888888887 556665 47888888877432221                        1100     11222456


Q ss_pred             CCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCC-CcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC
Q 002284          236 KKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHR-SLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP  314 (943)
Q Consensus       236 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~-~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~  314 (943)
                      +++|+.|++++|.++......        +..+...+ ....++++.+....++.....  ...++.+++.+|......+
T Consensus       172 l~~L~~L~L~~N~l~~~~~~~--------l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~--~~~~~~l~l~~n~~~~~~~  241 (635)
T 4g8a_A          172 LTNLEHLDLSSNKIQSIYCTD--------LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVM  241 (635)
T ss_dssp             CTTCCEEECCSSCCCEECGGG--------GHHHHTCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSSHHHH
T ss_pred             chhhhhhcccCcccccccccc--------ccchhhhhhhhhhhhcccCcccccCccccc--chhhhhhhhhccccccccc
Confidence            677888888877765332211        11111111 122344444444444333221  3445666666664432211


Q ss_pred             --CCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCcccEEeeccCCCc
Q 002284          315 --SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKL  392 (943)
Q Consensus       315 --~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l  392 (943)
                        .+..++.++...+..+.....              ..++..               ....+.....+....+.. ...
T Consensus       242 ~~~~~~l~~l~~~~l~~~~~~~~--------------~~l~~~---------------~~~~~~~~~~l~~~~l~~-~~~  291 (635)
T 4g8a_A          242 KTCIQGLAGLEVHRLVLGEFRNE--------------GNLEKF---------------DKSALEGLCNLTIEEFRL-AYL  291 (635)
T ss_dssp             HHHHHTTTTCEEEEEEEECCTTS--------------CCCSCC---------------CTTTTGGGGGSEEEEEEE-ECC
T ss_pred             chhhcCCcccccccccccccccc--------------cccccc---------------cccccccccchhhhhhhh-hhh
Confidence              333444444444432211000              000000               011122233333333332 111


Q ss_pred             c---CCCCCCCCCccEEEEeccCCCCccceEEeccCCceeeeccCcccchhhhccccccccCCCccccCCCCceeeeeEe
Q 002284          393 Q---GTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISII  469 (943)
Q Consensus       393 ~---~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~  469 (943)
                      .   ..++..           +..+..++.+.+.++.............++.+++++|.+.+.+.               
T Consensus       292 ~~~~~~~~~~-----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---------------  345 (635)
T 4g8a_A          292 DYYLDGIIDL-----------FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT---------------  345 (635)
T ss_dssp             CSCEEECTTT-----------TGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC---------------
T ss_pred             cccccchhhh-----------hhhhcccccccccccccccccccccchhhhhhhcccccccCcCc---------------
Confidence            1   001110           23344555555555544333333333333444444443332211               


Q ss_pred             ecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcC--ccchhccCCCCcCeeec
Q 002284          470 IDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLE--KLPKSLLSLSSLTEMRI  547 (943)
Q Consensus       470 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L  547 (943)
                                     ..++.|+.+.+.++... ....     ...+++|+.|++++|....  ..+..+..+.+|+++++
T Consensus       346 ---------------~~l~~L~~l~l~~n~~~-~~~~-----~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~  404 (635)
T 4g8a_A          346 ---------------LKLKSLKRLTFTSNKGG-NAFS-----EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDL  404 (635)
T ss_dssp             ---------------CBCTTCCEEEEESCCSC-CBCC-----CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEEC
T ss_pred             ---------------ccchhhhhcccccccCC-CCcc-----cccccccccchhhccccccccccccchhhhhhhhhhhc
Confidence                           12344444555444321 1111     3455666666666665432  23445556666777776


Q ss_pred             cCCCCCcccCCCCCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCc-CCCCCCceEEeccCcCcc
Q 002284          548 HNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGV-QLPPSLKQLEIYNCDNLR  626 (943)
Q Consensus       548 ~~n~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~~~~L~  626 (943)
                      ..+......+....+++|+.+++.++......+... +..+++++.+++++|......+.. ...               
T Consensus       405 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~-~~~l~~l~~l~ls~n~l~~~~~~~~~~~---------------  468 (635)
T 4g8a_A          405 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV-FLSLRNLIYLDISHTHTRVAFNGIFNGL---------------  468 (635)
T ss_dssp             CSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCT-TTTCTTCCEEECTTSCCEECCTTTTTTC---------------
T ss_pred             cccccccccccccccccccchhhhhccccccccccc-cccccccccccccccccccccccccccc---------------
Confidence            666533322222335556666665555333333222 345566666666666533222111 111               


Q ss_pred             ccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchh-hHhhhccccccc
Q 002284          627 TLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLES-IVERLDNKISLE  705 (943)
Q Consensus       627 ~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~-~~~~~~~l~~L~  705 (943)
                                                                         ++++.|++++|...+. .|..+..+++|+
T Consensus       469 ---------------------------------------------------~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~  497 (635)
T 4g8a_A          469 ---------------------------------------------------SSLEVLKMAGNSFQENFLPDIFTELRNLT  497 (635)
T ss_dssp             ---------------------------------------------------TTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             ---------------------------------------------------hhhhhhhhhhcccccccCchhhhhccccC
Confidence                                                               3455666665554432 344566667777


Q ss_pred             EEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCC-CCCCceeecCC
Q 002284          706 VIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNL-SSLQYLTIGGV  784 (943)
Q Consensus       706 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l-~~L~~L~l~~~  784 (943)
                      +|++++|++.+..|..|.++++|++|+|++|...+..|..+..+++|++|++++|+..+..|..+..+ ++|++|++++|
T Consensus       498 ~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N  577 (635)
T 4g8a_A          498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN  577 (635)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred             EEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence            77777777776667777777777777777774333333445567777777777777666666666666 46777777776


Q ss_pred             CC
Q 002284          785 PS  786 (943)
Q Consensus       785 ~~  786 (943)
                      |.
T Consensus       578 p~  579 (635)
T 4g8a_A          578 DF  579 (635)
T ss_dssp             CB
T ss_pred             CC
Confidence            63

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.5e-33  Score=334.51  Aligned_cols=33  Identities=15%  Similarity=0.103  Sum_probs=25.9

Q ss_pred             CCceeEEEEEeccCccccccccccccccccEEee
Q 002284           33 SRNLHHLSYIRGDYDGVKRFEDLYDIQHLRTLLP   66 (943)
Q Consensus        33 ~~~~~~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~   66 (943)
                      .++|++|.+..+.+....+ +.+.++++||+|.+
T Consensus       322 ~~~V~~L~Ls~~~L~G~ip-~~l~~L~~L~~LdL  354 (876)
T 4ecn_A          322 NGRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSF  354 (876)
T ss_dssp             TSCEEEEECTTTCCEEEEC-GGGGGCTTCCEEES
T ss_pred             CCCEEEEECccCCCCCcCc-hHHhccccceEeee
Confidence            5789999998776654432 57789999999988

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.2e-32  Score=324.82  Aligned_cols=537  Identities=17%  Similarity=0.162  Sum_probs=270.5

Q ss_pred             cEEEecCccccccCccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHhccccCceEEcCCCC
Q 002284           92 RVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTD  170 (943)
Q Consensus        92 ~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~  170 (943)
                      ++.+.++.+++.+|..+.  .++++|||++|+|+.+| .+|+++++|++|+|++|.+.+..|..|++|++|++|++++|+
T Consensus        34 ~~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             TEEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             CEEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence            456777778999998774  48999999999999996 589999999999999997555556679999999999999999


Q ss_pred             CCcccccc-ccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEeecC
Q 002284          171 SLEEMPLG-IGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRS  249 (943)
Q Consensus       171 ~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~  249 (943)
                       +..+|.+ |+++++|++|+...+                        .+..+      ....+.++++|++|++++|.+
T Consensus       112 -l~~l~~~~f~~L~~L~~L~Ls~N------------------------~l~~l------~~~~~~~L~~L~~L~Ls~N~l  160 (635)
T 4g8a_A          112 -IQSLALGAFSGLSSLQKLVAVET------------------------NLASL------ENFPIGHLKTLKELNVAHNLI  160 (635)
T ss_dssp             -CCEECGGGGTTCTTCCEEECTTS------------------------CCCCS------TTCCCTTCTTCCEEECCSSCC
T ss_pred             -CCCCCHHHhcCCCCCCEEECCCC------------------------cCCCC------ChhhhhcCcccCeeccccCcc
Confidence             6777654 677777666622111                        00000      001133444444444444443


Q ss_pred             CCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCC----e
Q 002284          250 TNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLK----H  324 (943)
Q Consensus       250 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~----~  324 (943)
                      +.                                 ...|..+..  +++|++|++++|.+.+..+ .+..+.+++    .
T Consensus       161 ~~---------------------------------~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~  205 (635)
T 4g8a_A          161 QS---------------------------------FKLPEYFSN--LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS  205 (635)
T ss_dssp             CC---------------------------------CCCCGGGGG--CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCE
T ss_pred             cc---------------------------------CCCchhhcc--chhhhhhcccCccccccccccccchhhhhhhhhh
Confidence            21                                 122333322  5666666666666655444 333333222    3


Q ss_pred             eEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCcccEEeeccCCCccCCCCCCCCCcc
Q 002284          325 LEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLD  404 (943)
Q Consensus       325 L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~  404 (943)
                      ++++.|.. ..++.....      ...++.+.+.++......    .+..+..++.++...+.. ....+.         
T Consensus       206 ~~ls~n~l-~~i~~~~~~------~~~~~~l~l~~n~~~~~~----~~~~~~~l~~l~~~~l~~-~~~~~~---------  264 (635)
T 4g8a_A          206 LDLSLNPM-NFIQPGAFK------EIRLHKLTLRNNFDSLNV----MKTCIQGLAGLEVHRLVL-GEFRNE---------  264 (635)
T ss_dssp             EECTTCCC-CEECTTTTT------TCEEEEEEEESCCSSHHH----HHHHHHTTTTCEEEEEEE-ECCTTS---------
T ss_pred             hhcccCcc-cccCccccc------chhhhhhhhhcccccccc----cchhhcCCcccccccccc-cccccc---------
Confidence            44444432 222111111      122333333332110000    011122233333332221 000000         


Q ss_pred             EEEEeccCCCCccceEEeccCCceeeeccCcccchhhhccccccccCCCccccCCCCceeeeeEeecCccccccchhhhh
Q 002284          405 ILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLL  484 (943)
Q Consensus       405 ~L~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~  484 (943)
                                ..++...                              .........+...++..  +............+
T Consensus       265 ----------~~l~~~~------------------------------~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~~  302 (635)
T 4g8a_A          265 ----------GNLEKFD------------------------------KSALEGLCNLTIEEFRL--AYLDYYLDGIIDLF  302 (635)
T ss_dssp             ----------CCCSCCC------------------------------TTTTGGGGGSEEEEEEE--ECCCSCEEECTTTT
T ss_pred             ----------ccccccc------------------------------ccccccccchhhhhhhh--hhhcccccchhhhh
Confidence                      0000000                              00000111122222210  00001111111223


Q ss_pred             hcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCCCCC
Q 002284          485 QDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQ  564 (943)
Q Consensus       485 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~~  564 (943)
                      ..+.+++.+.+.++. +..+..     +....+|+.|++.+|......+   ..+..|+.+++.+|.. ...+....+++
T Consensus       303 ~~~~~l~~l~~~~~~-~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~-~~~~~~~~l~~  372 (635)
T 4g8a_A          303 NCLTNVSSFSLVSVT-IERVKD-----FSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKG-GNAFSEVDLPS  372 (635)
T ss_dssp             GGGTTCSEEEEESCE-EEECGG-----GGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCS-CCBCCCCBCTT
T ss_pred             hhhcccccccccccc-cccccc-----cccchhhhhhhcccccccCcCc---ccchhhhhcccccccC-CCCcccccccc
Confidence            445555566555553 222221     4445566666666664432222   2345566666666643 22233333556


Q ss_pred             ccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCcCCCCCCceEEeccCcCccccccccCcccccccCCcc
Q 002284          565 LRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLL  644 (943)
Q Consensus       565 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L  644 (943)
                      |+.+++++|..............+.+|+++++..+......+.....++|+.+++..+......+..             
T Consensus       373 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~-------------  439 (635)
T 4g8a_A          373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS-------------  439 (635)
T ss_dssp             CCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSC-------------
T ss_pred             cccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccc-------------
Confidence            6666666665322111111122456666666666654433333333444555555444322111100             


Q ss_pred             ceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcc-ccccccc
Q 002284          645 ECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLK-MLPHGLH  723 (943)
Q Consensus       645 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~p~~~~  723 (943)
                                                 .+..+ .+++.++++.|......+..+..+++|+.|++++|...+ ..|..+.
T Consensus       440 ---------------------------~~~~l-~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~  491 (635)
T 4g8a_A          440 ---------------------------VFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT  491 (635)
T ss_dssp             ---------------------------TTTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred             ---------------------------ccccc-cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhh
Confidence                                       01111 356666666666555555666667777777777776443 3456666


Q ss_pred             CCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCC-CCcce
Q 002284          724 KLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFP-TNLHS  802 (943)
Q Consensus       724 ~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~L~~  802 (943)
                      .+++|++|+|++|...+..|..+..+++|++|++++|...+..|..+..+++|++|++++|......|.....+ ++|+.
T Consensus       492 ~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~  571 (635)
T 4g8a_A          492 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF  571 (635)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCE
T ss_pred             hccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCE
Confidence            77777777777775444445556667777777777776555555566777777777777766444434333333 56666


Q ss_pred             EEecCCcc
Q 002284          803 LEIDGMKI  810 (943)
Q Consensus       803 L~l~~c~~  810 (943)
                      |++++|+.
T Consensus       572 L~L~~Np~  579 (635)
T 4g8a_A          572 LNLTQNDF  579 (635)
T ss_dssp             EECTTCCB
T ss_pred             EEeeCCCC
Confidence            66666653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.8e-33  Score=320.85  Aligned_cols=442  Identities=17%  Similarity=0.097  Sum_probs=254.8

Q ss_pred             ccchhhhccCcccEEEecCccccccC-ccccCCCCCceeecCCCccccc-chhhhhccccceeecCCCcccccccHHHhc
Q 002284           80 SILPRLLKLQRLRVFSLRGYLISEVP-DSIGDLSYLRYLNLSGTQIRTL-PESVNKLYNLHTLLLEGCRELKKKCADMGN  157 (943)
Q Consensus        80 ~~~~~~~~l~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p~~~~~  157 (943)
                      .+|.+++  ++|++|++++|.++.++ .+|.++++|++|+|++|+|+.+ |..|+++++|++|++++|. +..+|..  .
T Consensus        14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~   88 (520)
T 2z7x_B           14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH--P   88 (520)
T ss_dssp             SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--C
T ss_pred             ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc--c
Confidence            3454444  55666666666655553 4555666666666666666555 4555666666666666654 3344444  5


Q ss_pred             cccCceEEcCCCCCCc-cccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCC
Q 002284          158 LIKLHHLNNSNTDSLE-EMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGK  236 (943)
Q Consensus       158 L~~L~~L~l~~n~~~~-~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~  236 (943)
                      +++|++|++++|.+.+ .+|..++++++|++|                                                
T Consensus        89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L------------------------------------------------  120 (520)
T 2z7x_B           89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFL------------------------------------------------  120 (520)
T ss_dssp             CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE------------------------------------------------
T ss_pred             cCCccEEeccCCccccccchhhhccCCcceEE------------------------------------------------
Confidence            5666666666665322 234445555555544                                                


Q ss_pred             CCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCc--ceEEEEeeCC---CCCCcccCCCCcC-CeeEEEEeCCCCC
Q 002284          237 KNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSL--EQFCISGFGG---KKFPTWLGYSLFS-NLVTLKFQDCSMC  310 (943)
Q Consensus       237 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L--~~L~l~~~~~---~~~p~~~~~~~l~-~L~~L~L~~n~~~  310 (943)
                            ++++|.++.              ..+..+++|  +.|+++++..   ...|.++..  +. +...+++++|.+.
T Consensus       121 ------~L~~n~l~~--------------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~--l~~~~l~l~l~~n~~~  178 (520)
T 2z7x_B          121 ------GLSTTHLEK--------------SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD--FNTESLHIVFPTNKEF  178 (520)
T ss_dssp             ------EEEESSCCG--------------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT--CCEEEEEEECCSSSCC
T ss_pred             ------EecCcccch--------------hhccccccceeeEEEeecccccccccccccccc--cccceEEEEeccCcch
Confidence                  333333310              011111222  4444444332   223433332  21 2345566667666


Q ss_pred             CCCC--CCCCCCCCCeeEEecCc-------CceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCcc
Q 002284          311 TSMP--SVGQLPSLKHLEVRGMS-------RVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKL  381 (943)
Q Consensus       311 ~~~~--~~~~l~~L~~L~L~~~~-------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L  381 (943)
                      +.++  .+..+++|+.|++++|.       ..+.++ .+.      .+++|+.|++.++........+..+  ....++|
T Consensus       179 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~------~l~~L~~L~l~~~~l~~~~~~~~~~--~~~~~~L  249 (520)
T 2z7x_B          179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQ------TNPKLSNLTLNNIETTWNSFIRILQ--LVWHTTV  249 (520)
T ss_dssp             CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGG------GCTTCCEEEEEEEEEEHHHHHHHHH--HHHTSSC
T ss_pred             hhhhhhhhhcccceeeccccccccccccceeecchh-hhc------cccchhhccccccccCHHHHHHHHH--HhhhCcc
Confidence            6555  56677777777777764       111111 222      2677777777766422211110000  0124578


Q ss_pred             cEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEEeccCCceee-eccCcc---cchhhhccccccccCCCcccc
Q 002284          382 RELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVW-RSTTDC---ESQLYKDISNQMFLGGPLKLQ  457 (943)
Q Consensus       382 ~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~---~~l~~l~ls~n~l~~~~~~~~  457 (943)
                      ++|++++ ++++|.+|..+....      ...++.|+.+++++|....+ ..+..+   .+++.+++++|.+.+.+....
T Consensus       250 ~~L~l~~-n~l~~~~p~~~~~~~------~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~  322 (520)
T 2z7x_B          250 WYFSISN-VKLQGQLDFRDFDYS------GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK  322 (520)
T ss_dssp             SEEEEEE-EEEESCCCCCCCCCC------SCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred             cEEEeec-ccccCccccchhhcc------cccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhh
Confidence            8888888 577777776551100      14455666666666654111 111111   347777777777766654457


Q ss_pred             CCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccch-hc
Q 002284          458 LPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPK-SL  536 (943)
Q Consensus       458 l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~  536 (943)
                      +++|++|+++     .+.+....+..+..+++|+.|++++|. ++.++... ..+..+++|++|++++|.+.+.+|. .+
T Consensus       323 l~~L~~L~Ls-----~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~l~~~~~  395 (520)
T 2z7x_B          323 ISPFLHLDFS-----NNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIA-EMTTQMKSLQQLDISQNSVSYDEKKGDC  395 (520)
T ss_dssp             CCCCCEEECC-----SSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHH-HHHTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred             CCcccEEEeE-----CCccChhhhhhhccCCCCCEEEccCCc-cCccccch-HHHhhCCCCCEEECCCCcCCcccccchh
Confidence            7788888887     333444444566778888888888885 55433211 1177888888888888877765665 37


Q ss_pred             cCCCCcCeeeccCCCCCcccCCCCCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCc--CCCCCC
Q 002284          537 LSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGV--QLPPSL  614 (943)
Q Consensus       537 ~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~~L  614 (943)
                      ..+++|++|++++|...+.++.. ++++|++|++++|. ++.+|..+.  .+++|++|++++|++. .+|..  ...++|
T Consensus       396 ~~l~~L~~L~Ls~N~l~~~~~~~-l~~~L~~L~Ls~N~-l~~ip~~~~--~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L  470 (520)
T 2z7x_B          396 SWTKSLLSLNMSSNILTDTIFRC-LPPRIKVLDLHSNK-IKSIPKQVV--KLEALQELNVASNQLK-SVPDGIFDRLTSL  470 (520)
T ss_dssp             CCCTTCCEEECCSSCCCGGGGGS-CCTTCCEEECCSSC-CCCCCGGGG--GCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             ccCccCCEEECcCCCCCcchhhh-hcccCCEEECCCCc-ccccchhhh--cCCCCCEEECCCCcCC-ccCHHHhccCCcc
Confidence            77888888888888765554432 23788888888887 447776643  7888888888888765 45542  445678


Q ss_pred             ceEEeccCcC
Q 002284          615 KQLEIYNCDN  624 (943)
Q Consensus       615 ~~L~l~~~~~  624 (943)
                      +.|++++++-
T Consensus       471 ~~L~l~~N~~  480 (520)
T 2z7x_B          471 QKIWLHTNPW  480 (520)
T ss_dssp             CEEECCSSCB
T ss_pred             cEEECcCCCC
Confidence            8888888753

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.98  E-value=1.7e-31  Score=310.24  Aligned_cols=438  Identities=18%  Similarity=0.112  Sum_probs=239.0

Q ss_pred             ccchhhhccCcccEEEecCccccccC-ccccCCCCCceeecCCCccccc-chhhhhccccceeecCCCcccccccHHHhc
Q 002284           80 SILPRLLKLQRLRVFSLRGYLISEVP-DSIGDLSYLRYLNLSGTQIRTL-PESVNKLYNLHTLLLEGCRELKKKCADMGN  157 (943)
Q Consensus        80 ~~~~~~~~l~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p~~~~~  157 (943)
                      .+|.+++  ++|++|++++|.++.+| .+|.++++|++|+|++|+|+.+ |.+|+++++|++|++++|. +..+|..  .
T Consensus        45 ~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~  119 (562)
T 3a79_B           45 HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--P  119 (562)
T ss_dssp             SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--C
T ss_pred             cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--c
Confidence            4666554  67777777777777764 5677777777777777777776 5667777777777777775 4456655  6


Q ss_pred             cccCceEEcCCCCCCccc--cccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCC
Q 002284          158 LIKLHHLNNSNTDSLEEM--PLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDG  235 (943)
Q Consensus       158 L~~L~~L~l~~n~~~~~~--p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~  235 (943)
                      +++|++|++++|. +..+  |..++++++|++|+...+                        .+..     .    .+..
T Consensus       120 l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n------------------------~l~~-----~----~~~~  165 (562)
T 3a79_B          120 MASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAA------------------------KFRQ-----L----DLLP  165 (562)
T ss_dssp             CTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECS------------------------BCCT-----T----TTGG
T ss_pred             cccCCEEECCCCC-ccccCchHhhcccCcccEEecCCC------------------------cccc-----C----chhh
Confidence            7777777777777 4443  345666666655522111                        1100     0    0112


Q ss_pred             CCCC--CeEEEEeecC--CCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCC
Q 002284          236 KKNL--KVLMLEWTRS--TNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCT  311 (943)
Q Consensus       236 ~~~L--~~L~l~~n~~--~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~  311 (943)
                      +++|  +.|++++|.+  +                                  ...|.++..-.. ..-.+++++|.+.+
T Consensus       166 l~~L~L~~L~L~~n~l~~~----------------------------------~~~~~~l~~l~~-~~l~l~l~~n~~~~  210 (562)
T 3a79_B          166 VAHLHLSCILLDLVSYHIK----------------------------------GGETESLQIPNT-TVLHLVFHPNSLFS  210 (562)
T ss_dssp             GTTSCEEEEEEEESSCCCC----------------------------------SSSCCEEEECCE-EEEEEEECSSSCCC
T ss_pred             hhhceeeEEEeeccccccc----------------------------------ccCcccccccCc-ceEEEEecCccchh
Confidence            2222  5555555444  2                                  122333322111 12245667777666


Q ss_pred             CCC--CCCCCCCCCeeEEecCcC----ceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCcccEEe
Q 002284          312 SMP--SVGQLPSLKHLEVRGMSR----VKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELH  385 (943)
Q Consensus       312 ~~~--~~~~l~~L~~L~L~~~~~----~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~  385 (943)
                      .++  .+..+++|+.|++++|..    +......+.+      +++|+.|++.++..-.....+. +. ....++|++|+
T Consensus       211 ~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~------l~~L~~L~L~~~~l~~~~~~~~-~~-~~~~~~L~~L~  282 (562)
T 3a79_B          211 VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR------GPTLLNVTLQHIETTWKCSVKL-FQ-FFWPRPVEYLN  282 (562)
T ss_dssp             CCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHS------CSSCEEEEEEEEEECHHHHHHH-HH-HHTTSSEEEEE
T ss_pred             hhhhhcccccceEEEecccccccccchHHHHHHHHhc------cCcceEEEecCCcCcHHHHHHH-HH-hhhcccccEEE
Confidence            555  556677788888877631    1111111222      6677777777654211111100 01 11245899999


Q ss_pred             eccCCCccCCCCCCC-----CCccEEEEeccCCCCccceEEeccCCceee-eccC---cccchhhhccccccccCCCccc
Q 002284          386 IVRCSKLQGTLPTHL-----TLLDILVVQNFTSLPALCKLRIDRCKKVVW-RSTT---DCESQLYKDISNQMFLGGPLKL  456 (943)
Q Consensus       386 l~~c~~l~~~~p~~l-----~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~-~~~~---~~~~l~~l~ls~n~l~~~~~~~  456 (943)
                      +++ ++++|.+|..+     ..++.|.+.+           +..+....+ ..+.   ...+++++++++|.+.......
T Consensus       283 l~~-n~l~~~ip~~~~~~~~~~L~~L~~~~-----------~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  350 (562)
T 3a79_B          283 IYN-LTITERIDREEFTYSETALKSLMIEH-----------VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP  350 (562)
T ss_dssp             EEE-EEECSCCCCCCCCCCSCSCCEEEEEE-----------EEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCS
T ss_pred             Eec-cEeeccccchhhhcccccchheehhh-----------cccceeecChhhhhhhhccCcceEEEccCCCcccccCcc
Confidence            999 57888888766     4444444433           222221000 0000   0123555555555554444334


Q ss_pred             cCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccch-h
Q 002284          457 QLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPK-S  535 (943)
Q Consensus       457 ~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~  535 (943)
                      .+++|++|+++     .+.+....+..+..+++|+.|++++|. ++.++... ..+..+++|++|++++|.+.+.+|. .
T Consensus       351 ~l~~L~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~  423 (562)
T 3a79_B          351 SPSSFTFLNFT-----QNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVA-LMTKNMSSLETLDVSLNSLNSHAYDRT  423 (562)
T ss_dssp             SCCCCCEEECC-----SSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHH-HTTTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred             CCCCceEEECC-----CCccccchhhhhcccCCCCEEECCCCC-cCCcccch-hhhcCCCCCCEEECCCCcCCCccChhh
Confidence            55666666666     223333334455666677777777663 44433211 1156667777777777766554444 3


Q ss_pred             ccCCCCcCeeeccCCCCCcccCCCCCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccC--cCCCCC
Q 002284          536 LLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAG--VQLPPS  613 (943)
Q Consensus       536 ~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~~  613 (943)
                      +..+++|++|++++|...+.++. .++++|++|++++|. ++.+|..+.  .+++|++|++++|.+. .+|.  ....++
T Consensus       424 ~~~l~~L~~L~l~~n~l~~~~~~-~l~~~L~~L~L~~N~-l~~ip~~~~--~l~~L~~L~L~~N~l~-~l~~~~~~~l~~  498 (562)
T 3a79_B          424 CAWAESILVLNLSSNMLTGSVFR-CLPPKVKVLDLHNNR-IMSIPKDVT--HLQALQELNVASNQLK-SVPDGVFDRLTS  498 (562)
T ss_dssp             CCCCTTCCEEECCSSCCCGGGGS-SCCTTCSEEECCSSC-CCCCCTTTT--SSCCCSEEECCSSCCC-CCCTTSTTTCTT
T ss_pred             hcCcccCCEEECCCCCCCcchhh-hhcCcCCEEECCCCc-CcccChhhc--CCCCCCEEECCCCCCC-CCCHHHHhcCCC
Confidence            56667777777777764443332 223567777777775 445665532  6777777777777654 3443  244456


Q ss_pred             CceEEeccCc
Q 002284          614 LKQLEIYNCD  623 (943)
Q Consensus       614 L~~L~l~~~~  623 (943)
                      |+.|++++++
T Consensus       499 L~~L~l~~N~  508 (562)
T 3a79_B          499 LQYIWLHDNP  508 (562)
T ss_dssp             CCCEECCSCC
T ss_pred             CCEEEecCCC
Confidence            7777777764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.98  E-value=1.7e-31  Score=298.62  Aligned_cols=82  Identities=16%  Similarity=0.179  Sum_probs=43.0

Q ss_pred             hhhhccCcccEEEecCccccccCccccCCCCCceeecCCCccc-ccchhhhhccccceeecCCCcccccccHHHhccccC
Q 002284           83 PRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIR-TLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKL  161 (943)
Q Consensus        83 ~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L  161 (943)
                      |+-...++|++|++++|.++.+|.+|+++++|++|++++|.+. .+|.+++++++|+++++++|..           .++
T Consensus         5 p~~~~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l   73 (454)
T 1jl5_A            5 PRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQA   73 (454)
T ss_dssp             -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTC
T ss_pred             ccccccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCC
Confidence            3334678899999999999889999999999999999999887 6788999999998888887741           578


Q ss_pred             ceEEcCCCCCCcccc
Q 002284          162 HHLNNSNTDSLEEMP  176 (943)
Q Consensus       162 ~~L~l~~n~~~~~~p  176 (943)
                      ++|++++|. +..+|
T Consensus        74 ~~L~l~~~~-l~~lp   87 (454)
T 1jl5_A           74 HELELNNLG-LSSLP   87 (454)
T ss_dssp             SEEECTTSC-CSCCC
T ss_pred             CEEEecCCc-cccCC
Confidence            889998887 55555

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=1.8e-29  Score=293.18  Aligned_cols=449  Identities=13%  Similarity=0.078  Sum_probs=247.4

Q ss_pred             CcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCC
Q 002284          273 SLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPC  351 (943)
Q Consensus       273 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~  351 (943)
                      ..+.++++++....+|..+    .++|++|++++|.+.+..+ .++.+++|++|++++|......+..|.+      +++
T Consensus        32 ~~~~l~ls~~~L~~ip~~~----~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~  101 (562)
T 3a79_B           32 LESMVDYSNRNLTHVPKDL----PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF------NQD  101 (562)
T ss_dssp             -CCEEECTTSCCCSCCTTS----CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT------CTT
T ss_pred             CCcEEEcCCCCCccCCCCC----CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCC------CCC
Confidence            3477788888777888754    3789999999999887776 7888999999999988744433433333      777


Q ss_pred             cceeecccccccccccccccCCccccCCcccEEeeccCCCccC-CCCCCCCCccEEEEeccCCCCccceEEeccCCceee
Q 002284          352 LETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQG-TLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVW  430 (943)
Q Consensus       352 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~  430 (943)
                      |++|++++|. +..     +|..  .+++|++|++++ |++++ .+|..           +..+++|++|++++|.... 
T Consensus       102 L~~L~Ls~N~-l~~-----lp~~--~l~~L~~L~Ls~-N~l~~l~~p~~-----------~~~l~~L~~L~L~~n~l~~-  160 (562)
T 3a79_B          102 LEYLDVSHNR-LQN-----ISCC--PMASLRHLDLSF-NDFDVLPVCKE-----------FGNLTKLTFLGLSAAKFRQ-  160 (562)
T ss_dssp             CCEEECTTSC-CCE-----ECSC--CCTTCSEEECCS-SCCSBCCCCGG-----------GGGCTTCCEEEEECSBCCT-
T ss_pred             CCEEECCCCc-CCc-----cCcc--ccccCCEEECCC-CCccccCchHh-----------hcccCcccEEecCCCcccc-
Confidence            8888888774 332     2332  678888888888 56662 12222           4556666666666654322 


Q ss_pred             eccCcccch--hhhccccccc--cCCCccccCCCCceeeeeEeecCccccccchhhhhhccc-ccCeEEeecCCCcccch
Q 002284          431 RSTTDCESQ--LYKDISNQMF--LGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIA-TLKRLKIERCPKLQFLE  505 (943)
Q Consensus       431 ~~~~~~~~l--~~l~ls~n~l--~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~l~  505 (943)
                      ..+..++.+  +++++++|.+  ++.                           .+..+..+. ..-.+++++|.....++
T Consensus       161 ~~~~~l~~L~L~~L~L~~n~l~~~~~---------------------------~~~~l~~l~~~~l~l~l~~n~~~~~~~  213 (562)
T 3a79_B          161 LDLLPVAHLHLSCILLDLVSYHIKGG---------------------------ETESLQIPNTTVLHLVFHPNSLFSVQV  213 (562)
T ss_dssp             TTTGGGTTSCEEEEEEEESSCCCCSS---------------------------SCCEEEECCEEEEEEEECSSSCCCCCC
T ss_pred             CchhhhhhceeeEEEeeccccccccc---------------------------CcccccccCcceEEEEecCccchhhhh
Confidence            222222333  4444444443  221                           111111111 01133444454333333


Q ss_pred             hhhhhhcCccceeceEEEecCCC----cCccchhccCCCCcCeeeccCCCCCcc----cCCCCCCCCccEEEEecCCCCC
Q 002284          506 EEDQWQFGLSFRLEHLELINCQD----LEKLPKSLLSLSSLTEMRIHNCSSLVS----FPEAVLPSQLRVISIWDSGALK  577 (943)
Q Consensus       506 ~~~~~~~~~l~~L~~L~l~~~~~----~~~~~~~~~~l~~L~~L~L~~n~~l~~----~~~~~~~~~L~~L~l~~~~~l~  577 (943)
                      ...   +..+++|+.|++++|..    .......+..+++|+.|++.++.....    ++.....++|++|++++|...+
T Consensus       214 ~~~---~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  290 (562)
T 3a79_B          214 NMS---VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE  290 (562)
T ss_dssp             EEE---ESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECS
T ss_pred             hhc---ccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeec
Confidence            322   55667777777776631    111223455666666666666542211    1111122356666666666444


Q ss_pred             cCcccccc---CCCCCccEEEeecCCCcccccCcC-----CCCCCceEEeccCcCccccccccCcccccccCCccceeee
Q 002284          578 FLPEAWML---DNNSSLEILDIRHCHLLTYIAGVQ-----LPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEI  649 (943)
Q Consensus       578 ~~~~~~~~---~~l~~L~~L~l~~n~~~~~~~~~~-----~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i  649 (943)
                      .+|..+..   .+++.|+.+++..+.+  .+|...     ...+|+.|+++++. +..+.                    
T Consensus       291 ~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~~--------------------  347 (562)
T 3a79_B          291 RIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTP-FIHMV--------------------  347 (562)
T ss_dssp             CCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSC-CCCCC--------------------
T ss_pred             cccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCC-ccccc--------------------
Confidence            55544210   2344444444444432  111100     00234455554442 11100                    


Q ss_pred             ecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcc--cccccccCCCC
Q 002284          650 HSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLK--MLPHGLHKLWH  727 (943)
Q Consensus       650 ~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~  727 (943)
                                            .... +++|++|++++|...+.+|..+.++++|+.|++++|.+.+  .+|..+.++++
T Consensus       348 ----------------------~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~  404 (562)
T 3a79_B          348 ----------------------CPPS-PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS  404 (562)
T ss_dssp             ----------------------CCSS-CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTT
T ss_pred             ----------------------CccC-CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCC
Confidence                                  0011 1456677777766655566666777777777777776655  33455667777


Q ss_pred             ccEEeccCCCCCcccCcC-CccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceEEec
Q 002284          728 LQEIDIQDCENLVSFPEG-GLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEID  806 (943)
Q Consensus       728 L~~L~l~~~~~l~~~p~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~  806 (943)
                      |++|++++|...+.+|.. +..+++|++|++++|...+.+|..+.  ++|++|++++|. ++.+|.+...+++|++|+++
T Consensus       405 L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~  481 (562)
T 3a79_B          405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVA  481 (562)
T ss_dssp             CCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECC
T ss_pred             CCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc-CcccChhhcCCCCCCEEECC
Confidence            777777777544446654 44466777777777766665555443  567777777763 55666666566777777777


Q ss_pred             CCcchhccccccCCCCCCCccEEEecC
Q 002284          807 GMKIWKSLMQLGGFHRYTSLRRLAISG  833 (943)
Q Consensus       807 ~c~~l~~~~~~~~~~~l~~L~~L~l~~  833 (943)
                      +|.... ++. ..+..+++|++|++++
T Consensus       482 ~N~l~~-l~~-~~~~~l~~L~~L~l~~  506 (562)
T 3a79_B          482 SNQLKS-VPD-GVFDRLTSLQYIWLHD  506 (562)
T ss_dssp             SSCCCC-CCT-TSTTTCTTCCCEECCS
T ss_pred             CCCCCC-CCH-HHHhcCCCCCEEEecC
Confidence            766542 222 1366667777777776

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=2e-29  Score=281.80  Aligned_cols=283  Identities=19%  Similarity=0.149  Sum_probs=159.4

Q ss_pred             ccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCcccc-ccCccccCCCCC-------------ceeecCCC
Q 002284           57 DIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLIS-EVPDSIGDLSYL-------------RYLNLSGT  122 (943)
Q Consensus        57 ~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~-~lp~~~~~l~~L-------------~~L~Ls~n  122 (943)
                      +.++||.|.+.+      |.+ +.+|+++.++++|++|++++|.+. .+|.+++++++|             ++|++++|
T Consensus         9 ~~~~L~~L~l~~------n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~   81 (454)
T 1jl5_A            9 SNTFLQEPLRHS------SNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL   81 (454)
T ss_dssp             --------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred             ccccchhhhccc------Cch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence            457788886643      455 889999999999999999999976 679999999886             66666666


Q ss_pred             cccccchhhhhccccceeecCCCcccccccHHHhccccCceEEcCCCCCCccccccccccccccccCceEeccCCCCCcc
Q 002284          123 QIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLR  202 (943)
Q Consensus       123 ~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~  202 (943)
                      .++.+|..   .++|++|++++|.+.+ +|..   +++|++|++++|. +..+|..                        
T Consensus        82 ~l~~lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~-l~~l~~~------------------------  129 (454)
T 1jl5_A           82 GLSSLPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNN-LKALSDL------------------------  129 (454)
T ss_dssp             CCSCCCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSC-CSCCCSC------------------------
T ss_pred             ccccCCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCc-cCcccCC------------------------
Confidence            66666542   2566666666664333 4432   3566666666665 3333211                        


Q ss_pred             cccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEee
Q 002284          203 ELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGF  282 (943)
Q Consensus       203 ~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~  282 (943)
                                                       .++|++|++++|.+++             ++.+..+++|+.|+++++
T Consensus       130 ---------------------------------~~~L~~L~L~~n~l~~-------------lp~~~~l~~L~~L~l~~N  163 (454)
T 1jl5_A          130 ---------------------------------PPLLEYLGVSNNQLEK-------------LPELQNSSFLKIIDVDNN  163 (454)
T ss_dssp             ---------------------------------CTTCCEEECCSSCCSS-------------CCCCTTCTTCCEEECCSS
T ss_pred             ---------------------------------CCCCCEEECcCCCCCC-------------CcccCCCCCCCEEECCCC
Confidence                                             0345555555555531             123555666777777766


Q ss_pred             CCCCCCcccCCCCcCCeeEEEEeCCCCCCCCCCCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccc
Q 002284          283 GGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQE  362 (943)
Q Consensus       283 ~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  362 (943)
                      ....+|.+     ..+|++|++++|.+.+ +|.++.+++|++|++++|...+ ++.         ..++|++|++++|. 
T Consensus       164 ~l~~lp~~-----~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~---------~~~~L~~L~l~~n~-  226 (454)
T 1jl5_A          164 SLKKLPDL-----PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPD---------LPLSLESIVAGNNI-  226 (454)
T ss_dssp             CCSCCCCC-----CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCC---------CCTTCCEEECCSSC-
T ss_pred             cCcccCCC-----cccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCC---------CcCcccEEECcCCc-
Confidence            66666654     3478888888888866 5678888888888888886322 211         14578888888774 


Q ss_pred             cccccccccCCccccCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEEeccCCceeeeccCcccchhhh
Q 002284          363 WEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYK  442 (943)
Q Consensus       363 l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l  442 (943)
                      +..     +| .++.+++|++|++++ |+++ .+|..              +++|+.|++++|.......  ..++++++
T Consensus       227 l~~-----lp-~~~~l~~L~~L~l~~-N~l~-~l~~~--------------~~~L~~L~l~~N~l~~l~~--~~~~L~~L  282 (454)
T 1jl5_A          227 LEE-----LP-ELQNLPFLTTIYADN-NLLK-TLPDL--------------PPSLEALNVRDNYLTDLPE--LPQSLTFL  282 (454)
T ss_dssp             CSS-----CC-CCTTCTTCCEEECCS-SCCS-SCCSC--------------CTTCCEEECCSSCCSCCCC--CCTTCCEE
T ss_pred             CCc-----cc-ccCCCCCCCEEECCC-CcCC-ccccc--------------ccccCEEECCCCcccccCc--ccCcCCEE
Confidence            222     23 367788888888888 6776 45542              2566666666665433221  12455666


Q ss_pred             ccccccccCCCccccCCCCceeeee
Q 002284          443 DISNQMFLGGPLKLQLPKLDELDIS  467 (943)
Q Consensus       443 ~ls~n~l~~~~~~~~l~~L~~L~Ls  467 (943)
                      ++++|.+++.+..  .++|+.|+++
T Consensus       283 ~ls~N~l~~l~~~--~~~L~~L~l~  305 (454)
T 1jl5_A          283 DVSENIFSGLSEL--PPNLYYLNAS  305 (454)
T ss_dssp             ECCSSCCSEESCC--CTTCCEEECC
T ss_pred             ECcCCccCcccCc--CCcCCEEECc
Confidence            6666665553211  2445555555

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.96  E-value=2.9e-28  Score=272.71  Aligned_cols=85  Identities=21%  Similarity=0.162  Sum_probs=68.6

Q ss_pred             ccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccc
Q 002284           80 SILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLI  159 (943)
Q Consensus        80 ~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~  159 (943)
                      ..+..+.++++|++|++++|.++.+| +++.+++|++|++++|.++.+|  ++.+++|++|++++|.+. .+|  +++++
T Consensus        33 ~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~-~~~--~~~l~  106 (457)
T 3bz5_A           33 TDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLT-NLD--VTPLT  106 (457)
T ss_dssp             TSEEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS-CCC--CTTCT
T ss_pred             ccccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCc-eee--cCCCC
Confidence            34455668889999999998888887 6888889999999999888886  788888888888888643 344  78888


Q ss_pred             cCceEEcCCCC
Q 002284          160 KLHHLNNSNTD  170 (943)
Q Consensus       160 ~L~~L~l~~n~  170 (943)
                      +|++|++++|.
T Consensus       107 ~L~~L~L~~N~  117 (457)
T 3bz5_A          107 KLTYLNCDTNK  117 (457)
T ss_dssp             TCCEEECCSSC
T ss_pred             cCCEEECCCCc
Confidence            88888888887

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.96  E-value=8.5e-28  Score=271.90  Aligned_cols=96  Identities=20%  Similarity=0.289  Sum_probs=65.4

Q ss_pred             ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284           87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN  166 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l  166 (943)
                      .+++++.|+++++.+..+|. +..+++|++|++++|.++.+|. ++++++|++|++++|.+.+ +|. ++++++|++|++
T Consensus        44 ~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L  119 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD-ITP-LANLTNLTGLTL  119 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEEC
T ss_pred             HhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCcccc-Chh-hcCCCCCCEEEC
Confidence            45677777777777777763 6777777777777777777765 7777777777777775433 333 777777777777


Q ss_pred             CCCCCCcccccccccccccccc
Q 002284          167 SNTDSLEEMPLGIGKLTCLLTL  188 (943)
Q Consensus       167 ~~n~~~~~~p~~~~~L~~L~~L  188 (943)
                      ++|. +..+|. ++++++|++|
T Consensus       120 ~~n~-l~~~~~-~~~l~~L~~L  139 (466)
T 1o6v_A          120 FNNQ-ITDIDP-LKNLTNLNRL  139 (466)
T ss_dssp             CSSC-CCCCGG-GTTCTTCSEE
T ss_pred             CCCC-CCCChH-HcCCCCCCEE
Confidence            7776 444443 5555555555

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=3.6e-28  Score=275.21  Aligned_cols=133  Identities=13%  Similarity=-0.020  Sum_probs=94.4

Q ss_pred             ccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccceeee
Q 002284          678 QALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVI  757 (943)
Q Consensus       678 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l  757 (943)
                      ++|+.|++++|...+..+..+..+++|++|++++|.+.+..|..+.++++|++|++++|...+..|..+..+++|++|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            46778888887776666777777788888888888777777777777888888888887544444555666778888888


Q ss_pred             ccccCCccCCCcCCCCCCCCceeecCCCCCccccCCC-CCCCCcceEEecCCcch
Q 002284          758 YGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDG-LFPTNLHSLEIDGMKIW  811 (943)
Q Consensus       758 ~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~~l  811 (943)
                      ++|...+..|..+..+++|++|++++|. ++.++.+. ..+++|++|++++|+..
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCcccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCcc
Confidence            8877666667777777888888887765 44455433 34566777777766644

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=2.9e-26  Score=259.36  Aligned_cols=233  Identities=16%  Similarity=0.218  Sum_probs=114.1

Q ss_pred             cCCeeEEEEeCCCCCCCCCCCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCcc
Q 002284          296 FSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEI  375 (943)
Q Consensus       296 l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  375 (943)
                      +++++.|++.++.+.. +|.+..+++|++|++++|... .++. +..      +++|++|+++++. +..     .+. +
T Consensus        45 l~~l~~L~l~~~~i~~-l~~~~~l~~L~~L~Ls~n~l~-~~~~-~~~------l~~L~~L~l~~n~-l~~-----~~~-~  108 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNNQLT-DITP-LKN------LTKLVDILMNNNQ-IAD-----ITP-L  108 (466)
T ss_dssp             HHTCCEEECCSSCCCC-CTTGGGCTTCCEEECCSSCCC-CCGG-GTT------CTTCCEEECCSSC-CCC-----CGG-G
T ss_pred             hccccEEecCCCCCcc-CcchhhhcCCCEEECCCCccC-Cchh-hhc------cccCCEEECCCCc-ccc-----Chh-h
Confidence            4566777776666543 445556666667766666522 2211 111      4444444444442 111     011 4


Q ss_pred             ccCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEEeccCCceeeeccCcccchhhhccccccccCCCcc
Q 002284          376 EGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLK  455 (943)
Q Consensus       376 ~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~  455 (943)
                      ..+++|++|++++ ++++ .+|.            +..+++|++|++                      ++|.+.+.+..
T Consensus       109 ~~l~~L~~L~L~~-n~l~-~~~~------------~~~l~~L~~L~l----------------------~~n~l~~~~~~  152 (466)
T 1o6v_A          109 ANLTNLTGLTLFN-NQIT-DIDP------------LKNLTNLNRLEL----------------------SSNTISDISAL  152 (466)
T ss_dssp             TTCTTCCEEECCS-SCCC-CCGG------------GTTCTTCSEEEE----------------------EEEEECCCGGG
T ss_pred             cCCCCCCEEECCC-CCCC-CChH------------HcCCCCCCEEEC----------------------CCCccCCChhh
Confidence            5566666666666 3554 2332            334444444444                      44444444444


Q ss_pred             ccCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchh
Q 002284          456 LQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKS  535 (943)
Q Consensus       456 ~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  535 (943)
                      ..+++|+.|+++   +.   +....  .+..+++|+.|++++|. ++.++.     +..+++|++|++++|.+.+..|  
T Consensus       153 ~~l~~L~~L~l~---~~---~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~-----l~~l~~L~~L~l~~n~l~~~~~--  216 (466)
T 1o6v_A          153 SGLTSLQQLSFG---NQ---VTDLK--PLANLTTLERLDISSNK-VSDISV-----LAKLTNLESLIATNNQISDITP--  216 (466)
T ss_dssp             TTCTTCSEEEEE---ES---CCCCG--GGTTCTTCCEEECCSSC-CCCCGG-----GGGCTTCSEEECCSSCCCCCGG--
T ss_pred             ccCCcccEeecC---Cc---ccCch--hhccCCCCCEEECcCCc-CCCChh-----hccCCCCCEEEecCCccccccc--
Confidence            455666666664   11   11111  14555666666666654 333321     4555666666666665444333  


Q ss_pred             ccCCCCcCeeeccCCCCCcccCCCCCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCC
Q 002284          536 LLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHL  601 (943)
Q Consensus       536 ~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~  601 (943)
                      +..+++|++|++++|. ++.++....+++|++|++++|.... ++.   +..+++|++|++++|.+
T Consensus       217 ~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~-~~~---~~~l~~L~~L~l~~n~l  277 (466)
T 1o6v_A          217 LGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISN-LAP---LSGLTKLTELKLGANQI  277 (466)
T ss_dssp             GGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCC-CGG---GTTCTTCSEEECCSSCC
T ss_pred             ccccCCCCEEECCCCC-cccchhhhcCCCCCEEECCCCcccc-chh---hhcCCCCCEEECCCCcc
Confidence            4456666666666664 3333333334555555555555322 221   23455555555555543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=7.6e-27  Score=264.34  Aligned_cols=367  Identities=14%  Similarity=0.072  Sum_probs=207.2

Q ss_pred             hccccccccCCCccccCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceE
Q 002284          442 KDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHL  521 (943)
Q Consensus       442 l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L  521 (943)
                      ++.+++.++..|.  ..++|++|+++     .+.+..+.+..+..+++|+.|++++|.....++...   |..+++|++|
T Consensus        15 ~~c~~~~l~~lp~--l~~~l~~L~Ls-----~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~---~~~l~~L~~L   84 (455)
T 3v47_A           15 AICINRGLHQVPE--LPAHVNYVDLS-----LNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT---FRGLSSLIIL   84 (455)
T ss_dssp             EECCSSCCSSCCC--CCTTCCEEECC-----SSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTT---TTTCTTCCEE
T ss_pred             cCcCCCCcccCCC--CCCccCEEEec-----CCccCcCChhHhccCccccEEECcCCcccceECccc---ccccccCCEE
Confidence            4455556666555  34778888887     345555666777888888888888886544555444   7888899999


Q ss_pred             EEecCCCcCccchhccCCCCcCeeeccCCCCCcccCC---CCCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeec
Q 002284          522 ELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPE---AVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRH  598 (943)
Q Consensus       522 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~  598 (943)
                      ++++|.+.+..|..+..+++|++|++++|...+.++.   ...+++|++|++++|...+..|..+ +.++++|++|++++
T Consensus        85 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~l~~L~~L~L~~  163 (455)
T 3v47_A           85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF-FLNMRRFHVLDLTF  163 (455)
T ss_dssp             ECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG-GGGCTTCCEEECTT
T ss_pred             eCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccc-cCCCCcccEEeCCC
Confidence            9999887777788888889999999998875543332   2336888899998888655555543 35788899999998


Q ss_pred             CCCcccccCc-C--CCCCCceEEeccCcCccccccccC---cccccccCCccceeeeecCCCcccccchhhHHHHhhhhh
Q 002284          599 CHLLTYIAGV-Q--LPPSLKQLEIYNCDNLRTLTAEEG---IHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLV  672 (943)
Q Consensus       599 n~~~~~~~~~-~--~~~~L~~L~l~~~~~L~~l~~~~~---~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~  672 (943)
                      |.+.+..+.. .  ...+|+.|+++++. +..++...-   .......++                              
T Consensus       164 n~l~~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~------------------------------  212 (455)
T 3v47_A          164 NKVKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNT------------------------------  212 (455)
T ss_dssp             CCBSCCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTC------------------------------
T ss_pred             CcccccChhhhhccccccccccccccCc-ccccchhhccccccccccccc------------------------------
Confidence            8765544332 1  11457777777763 333221100   000011223                              


Q ss_pred             cCCCcccccEEEeecCCCchhhHhhhccc---ccccEEEeeccCCccccc----------cccc--CCCCccEEeccCCC
Q 002284          673 VGNLPQALKFLSIWHCSKLESIVERLDNK---ISLEVIEIVSCENLKMLP----------HGLH--KLWHLQEIDIQDCE  737 (943)
Q Consensus       673 ~~~lp~~L~~L~l~~~~~l~~~~~~~~~l---~~L~~L~l~~~~~~~~~p----------~~~~--~l~~L~~L~l~~~~  737 (943)
                            +|++|++++|...+..+..+...   ++|+.|++++|...+...          ..+.  ..++|++|++++|.
T Consensus       213 ------~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  286 (455)
T 3v47_A          213 ------SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK  286 (455)
T ss_dssp             ------EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred             ------eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc
Confidence                  45555555555444444443332   455555555553332110          0111  12455555555554


Q ss_pred             CCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceEEecCCcchhccccc
Q 002284          738 NLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQL  817 (943)
Q Consensus       738 ~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  817 (943)
                      ..+..|..+..+++|++|++++|...+..|..+..+++|++|++++|......+..+..+++|++|++++|......+. 
T Consensus       287 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-  365 (455)
T 3v47_A          287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ-  365 (455)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT-
T ss_pred             ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh-
Confidence            4444444455555555555555554444455555555555555555543222233333345555555555544332221 


Q ss_pred             cCCCCCCCccEEEecCCCCcCcccCcccccccCCCCCCccEEEeecC
Q 002284          818 GGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNF  864 (943)
Q Consensus       818 ~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  864 (943)
                       .+..+++|++|++++  +.+..++.+..    ..+++|++|+++++
T Consensus       366 -~~~~l~~L~~L~L~~--N~l~~~~~~~~----~~l~~L~~L~l~~N  405 (455)
T 3v47_A          366 -SFLGLPNLKELALDT--NQLKSVPDGIF----DRLTSLQKIWLHTN  405 (455)
T ss_dssp             -TTTTCTTCCEEECCS--SCCSCCCTTTT----TTCTTCCEEECCSS
T ss_pred             -hccccccccEEECCC--CccccCCHhHh----ccCCcccEEEccCC
Confidence             345555555555555  23334443221    23455555555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.95  E-value=7.9e-27  Score=261.04  Aligned_cols=117  Identities=20%  Similarity=0.165  Sum_probs=97.0

Q ss_pred             cccccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhh
Q 002284           54 DLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNK  133 (943)
Q Consensus        54 ~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~  133 (943)
                      .+.++++|++|.+.++      .+.+ +| ++..+++|++|++++|.++.+|  ++.+++|++|++++|.++.+|  +++
T Consensus        37 ~~~~l~~L~~L~Ls~n------~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~  104 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNS------SITD-MT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTP  104 (457)
T ss_dssp             EHHHHTTCCEEECCSS------CCCC-CT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTT
T ss_pred             ChhHcCCCCEEEccCC------Cccc-Ch-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCC
Confidence            4567889999977543      4443 44 6679999999999999999986  899999999999999999986  899


Q ss_pred             ccccceeecCCCcccccccHHHhccccCceEEcCCCCCCcccccccccccccccc
Q 002284          134 LYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTL  188 (943)
Q Consensus       134 L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L  188 (943)
                      +++|++|++++|.+. .+|  ++.+++|++|++++|. +..++  ++.+++|++|
T Consensus       105 l~~L~~L~L~~N~l~-~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L  153 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTEL  153 (457)
T ss_dssp             CTTCCEEECCSSCCS-CCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEE
T ss_pred             CCcCCEEECCCCcCC-eec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEE
Confidence            999999999999744 455  8999999999999998 55553  6666666666

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=2.8e-25  Score=241.43  Aligned_cols=86  Identities=22%  Similarity=0.417  Sum_probs=70.2

Q ss_pred             hccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEE
Q 002284           86 LKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLN  165 (943)
Q Consensus        86 ~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~  165 (943)
                      ..+++|++|+++++.+..+|. +..+++|++|++++|.++.+|. +..+++|++|++++|. +..+| .+.++++|++|+
T Consensus        41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~  116 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELY  116 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEE
T ss_pred             hhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEE
Confidence            478889999999998888864 8888999999999999988876 8889999999999885 44454 588889999999


Q ss_pred             cCCCCCCcccc
Q 002284          166 NSNTDSLEEMP  176 (943)
Q Consensus       166 l~~n~~~~~~p  176 (943)
                      +++|. +..+|
T Consensus       117 l~~n~-i~~~~  126 (347)
T 4fmz_A          117 LNEDN-ISDIS  126 (347)
T ss_dssp             CTTSC-CCCCG
T ss_pred             CcCCc-ccCch
Confidence            98887 44443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=3.5e-26  Score=252.66  Aligned_cols=284  Identities=18%  Similarity=0.130  Sum_probs=192.8

Q ss_pred             cccccccEEeecccCCCCCCcchhccchhhh-ccCcccEEEecCccccccC-ccccCCCCCceeecCCCcccccc-hhhh
Q 002284           56 YDIQHLRTLLPVTLLSSRPGYLARSILPRLL-KLQRLRVFSLRGYLISEVP-DSIGDLSYLRYLNLSGTQIRTLP-ESVN  132 (943)
Q Consensus        56 ~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~i~  132 (943)
                      ..++++|.|.+.++.       ...+|+.++ .+++|++|++++|.++.+| ..|+.+++|++|+|++|.++.+| ..|+
T Consensus        42 ~~l~~l~~l~l~~~~-------l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  114 (390)
T 3o6n_A           42 ITLNNQKIVTFKNST-------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ  114 (390)
T ss_dssp             GGGCCCSEEEEESCE-------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cccCCceEEEecCCc-------hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence            357889999876542       567888877 8999999999999999885 58999999999999999999885 5689


Q ss_pred             hccccceeecCCCcccccccHH-HhccccCceEEcCCCCCCccccccccccccccccCceEeccCCCCCcccccCccccc
Q 002284          133 KLYNLHTLLLEGCRELKKKCAD-MGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLC  211 (943)
Q Consensus       133 ~L~~L~~L~L~~n~~~~~~p~~-~~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~  211 (943)
                      ++++|++|++++|. +..+|.. |+++++|++|++++|.+.+..|..++.+++|++|+...+.                 
T Consensus       115 ~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-----------------  176 (390)
T 3o6n_A          115 NVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-----------------  176 (390)
T ss_dssp             TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-----------------
T ss_pred             CCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-----------------
Confidence            99999999999996 5566665 6899999999999999444334558888988888432221                 


Q ss_pred             CceeecccccccCccchhhcccCCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCccc
Q 002284          212 GTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWL  291 (943)
Q Consensus       212 ~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~  291 (943)
                             +...         .+..+++|+.|++++|.++                .+...++|+.|+++++....+|...
T Consensus       177 -------l~~~---------~~~~l~~L~~L~l~~n~l~----------------~~~~~~~L~~L~l~~n~l~~~~~~~  224 (390)
T 3o6n_A          177 -------LTHV---------DLSLIPSLFHANVSYNLLS----------------TLAIPIAVEELDASHNSINVVRGPV  224 (390)
T ss_dssp             -------CSBC---------CGGGCTTCSEEECCSSCCS----------------EEECCSSCSEEECCSSCCCEEECCC
T ss_pred             -------CCcc---------ccccccccceeeccccccc----------------ccCCCCcceEEECCCCeeeeccccc
Confidence                   1000         1334566777777766553                1223446777777777666555432


Q ss_pred             CCCCcCCeeEEEEeCCCCCCCCCCCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeeccccccccccccccc
Q 002284          292 GYSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGC  371 (943)
Q Consensus       292 ~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  371 (943)
                          +++|++|++++|.+.+. +.++.+++|++|++++|......+..+..      +++|++|++++|. +..     +
T Consensus       225 ----~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~L~~n~-l~~-----~  287 (390)
T 3o6n_A          225 ----NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVK------MQRLERLYISNNR-LVA-----L  287 (390)
T ss_dssp             ----CSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTT------CSSCCEEECCSSC-CCE-----E
T ss_pred             ----cccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccc------cccCCEEECCCCc-Ccc-----c
Confidence                46777777777777543 56667777777777777644444433333      6667777776663 222     1


Q ss_pred             CCccccCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEEeccCC
Q 002284          372 SQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCK  426 (943)
Q Consensus       372 ~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~  426 (943)
                      +.....+++|++|++++ |+++ .+|..           +..+++|++|++++|.
T Consensus       288 ~~~~~~l~~L~~L~L~~-n~l~-~~~~~-----------~~~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          288 NLYGQPIPTLKVLDLSH-NHLL-HVERN-----------QPQFDRLENLYLDHNS  329 (390)
T ss_dssp             ECSSSCCTTCCEEECCS-SCCC-CCGGG-----------HHHHTTCSEEECCSSC
T ss_pred             CcccCCCCCCCEEECCC-Ccce-ecCcc-----------ccccCcCCEEECCCCc
Confidence            23335566777777777 4555 44432           2234555555555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=2.7e-25  Score=252.89  Aligned_cols=89  Identities=25%  Similarity=0.316  Sum_probs=59.2

Q ss_pred             hccchhhhccCcccEEEecCcccccc-CccccCCCCCceeecCCCccccc-chhhhhccccceeecCCCcccccccH-HH
Q 002284           79 RSILPRLLKLQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTL-PESVNKLYNLHTLLLEGCRELKKKCA-DM  155 (943)
Q Consensus        79 ~~~~~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p~-~~  155 (943)
                      ..+|.++.  +++++|+|++|.++.+ |..|.++++|++|+|++|.|+.+ |.+|+++++|++|+|++|. +..+|. .|
T Consensus        24 ~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~  100 (477)
T 2id5_A           24 VAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVF  100 (477)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSS
T ss_pred             CcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccc
Confidence            34555443  4667777777777766 45677777777777777777766 5667777777777777765 334443 36


Q ss_pred             hccccCceEEcCCCC
Q 002284          156 GNLIKLHHLNNSNTD  170 (943)
Q Consensus       156 ~~L~~L~~L~l~~n~  170 (943)
                      +++++|++|++++|.
T Consensus       101 ~~l~~L~~L~Ls~n~  115 (477)
T 2id5_A          101 TGLSNLTKLDISENK  115 (477)
T ss_dssp             TTCTTCCEEECTTSC
T ss_pred             cCCCCCCEEECCCCc
Confidence            677777777777776

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.93  E-value=1.7e-24  Score=239.09  Aligned_cols=309  Identities=17%  Similarity=0.176  Sum_probs=199.6

Q ss_pred             cCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhc
Q 002284          457 QLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSL  536 (943)
Q Consensus       457 ~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  536 (943)
                      .+++++.|+++     .+.+..++...+..+++|+.|++++|. ++.++...   |..+++|++|++++|.+.+..|..+
T Consensus        43 ~l~~l~~l~l~-----~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~  113 (390)
T 3o6n_A           43 TLNNQKIVTFK-----NSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYA---FAYAHTIQKLYMGFNAIRYLPPHVF  113 (390)
T ss_dssp             GGCCCSEEEEE-----SCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             ccCCceEEEec-----CCchhhCChhHhcccccCcEEECCCCc-ccccChhh---ccCCCCcCEEECCCCCCCcCCHHHh
Confidence            45677777777     445666777777888888888888885 56555543   7888888888888887766667778


Q ss_pred             cCCCCcCeeeccCCCCCcccCCCC--CCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCcCCCCCC
Q 002284          537 LSLSSLTEMRIHNCSSLVSFPEAV--LPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSL  614 (943)
Q Consensus       537 ~~l~~L~~L~L~~n~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L  614 (943)
                      ..+++|++|++++|. ++.+|...  .+++|++|++++|......+..  +..+++|++|++++|.+... + ...+++|
T Consensus       114 ~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~l~~L  188 (390)
T 3o6n_A          114 QNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT--FQATTSLQNLQLSSNRLTHV-D-LSLIPSL  188 (390)
T ss_dssp             TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT--TSSCTTCCEEECCSSCCSBC-C-GGGCTTC
T ss_pred             cCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhh--ccCCCCCCEEECCCCcCCcc-c-ccccccc
Confidence            888888888888886 45666543  3788888888888754444443  35788888888888875432 2 2345667


Q ss_pred             ceEEeccCcCccccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhh
Q 002284          615 KQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESI  694 (943)
Q Consensus       615 ~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~  694 (943)
                      +.|+++++ .+..++          ..++|+.++++++. ++.+             + ...+++|+.|++++|..... 
T Consensus       189 ~~L~l~~n-~l~~~~----------~~~~L~~L~l~~n~-l~~~-------------~-~~~~~~L~~L~l~~n~l~~~-  241 (390)
T 3o6n_A          189 FHANVSYN-LLSTLA----------IPIAVEELDASHNS-INVV-------------R-GPVNVELTILKLQHNNLTDT-  241 (390)
T ss_dssp             SEEECCSS-CCSEEE----------CCSSCSEEECCSSC-CCEE-------------E-CCCCSSCCEEECCSSCCCCC-
T ss_pred             ceeecccc-cccccC----------CCCcceEEECCCCe-eeec-------------c-ccccccccEEECCCCCCccc-
Confidence            78877776 333222          23456666665542 2211             1 12234677777777654432 


Q ss_pred             HhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCC
Q 002284          695 VERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLS  774 (943)
Q Consensus       695 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~  774 (943)
                       ..+..+++|++|++++|.+.+..|..+..+++|++|++++| .++.+|.....+++|++|++++|. +..+|..+..++
T Consensus       242 -~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~  318 (390)
T 3o6n_A          242 -AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFD  318 (390)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHT
T ss_pred             -HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccccccC
Confidence             35666677777777777766666666777777777777776 345556555566677777777765 445565666666


Q ss_pred             CCCceeecCCCCCccccCCCCCCCCcceEEecCCcchh
Q 002284          775 SLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWK  812 (943)
Q Consensus       775 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~  812 (943)
                      +|++|++++|+ +..++  ...+++|++|++++|+...
T Consensus       319 ~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          319 RLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             TCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred             cCCEEECCCCc-cceeC--chhhccCCEEEcCCCCccc
Confidence            77777777665 33343  2234666666666665443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=1.3e-24  Score=236.12  Aligned_cols=84  Identities=13%  Similarity=0.063  Sum_probs=44.0

Q ss_pred             hcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCC
Q 002284          698 LDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQ  777 (943)
Q Consensus       698 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~  777 (943)
                      +..+++|+.|++++|.+.+. + .+..+++|++|++++|......|..+..+++|++|++++|+..+..|  +..+++|+
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  336 (347)
T 4fmz_A          261 VKDLTKLKMLNVGSNQISDI-S-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD  336 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred             HhcCCCcCEEEccCCccCCC-h-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence            44455555555555544332 2 34555666666666664444444444555566666666655433333  55566666


Q ss_pred             ceeecCCC
Q 002284          778 YLTIGGVP  785 (943)
Q Consensus       778 ~L~l~~~~  785 (943)
                      +|++++|+
T Consensus       337 ~L~l~~N~  344 (347)
T 4fmz_A          337 SADFANQV  344 (347)
T ss_dssp             EESSSCC-
T ss_pred             eeehhhhc
Confidence            66666655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.92  E-value=3.6e-24  Score=243.56  Aligned_cols=277  Identities=19%  Similarity=0.179  Sum_probs=168.6

Q ss_pred             cCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhc
Q 002284          457 QLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSL  536 (943)
Q Consensus       457 ~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  536 (943)
                      .+++|++|+++     .+.+..+.+..+..+++|+.|++++|. ++.++...   |..+++|++|++++|.+.+..+..+
T Consensus        54 ~l~~L~~L~L~-----~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~Ls~n~i~~~~~~~~  124 (477)
T 2id5_A           54 SFPHLEELELN-----ENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGV---FTGLSNLTKLDISENKIVILLDYMF  124 (477)
T ss_dssp             TCTTCCEEECT-----TSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTS---STTCTTCCEEECTTSCCCEECTTTT
T ss_pred             CCCCCCEEECC-----CCccCEeChhhhhCCccCCEEECCCCc-CCccCccc---ccCCCCCCEEECCCCccccCChhHc
Confidence            34444444444     223333444556666777777777664 55555443   6667777777777776666666667


Q ss_pred             cCCCCcCeeeccCCCCCcccCCC--CCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccC-cCCCCC
Q 002284          537 LSLSSLTEMRIHNCSSLVSFPEA--VLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAG-VQLPPS  613 (943)
Q Consensus       537 ~~l~~L~~L~L~~n~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~  613 (943)
                      ..+++|++|++++|... .++..  ..+++|++|++++|.. ..++... +.++++|+.|++++|.+....+. ....++
T Consensus       125 ~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~-l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~  201 (477)
T 2id5_A          125 QDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNL-TSIPTEA-LSHLHGLIVLRLRHLNINAIRDYSFKRLYR  201 (477)
T ss_dssp             TTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCC-SSCCHHH-HTTCTTCCEEEEESCCCCEECTTCSCSCTT
T ss_pred             cccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcC-cccChhH-hcccCCCcEEeCCCCcCcEeChhhcccCcc
Confidence            77777777777777533 33222  2256777777777763 3333322 34677777777777765432221 133344


Q ss_pred             CceEEeccCcCccccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchh
Q 002284          614 LKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLES  693 (943)
Q Consensus       614 L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~  693 (943)
                      |+.|++++|..+..++..                                         ... ..+|++|++++|...+.
T Consensus       202 L~~L~l~~~~~~~~~~~~-----------------------------------------~~~-~~~L~~L~l~~n~l~~~  239 (477)
T 2id5_A          202 LKVLEISHWPYLDTMTPN-----------------------------------------CLY-GLNLTSLSITHCNLTAV  239 (477)
T ss_dssp             CCEEEEECCTTCCEECTT-----------------------------------------TTT-TCCCSEEEEESSCCCSC
T ss_pred             cceeeCCCCccccccCcc-----------------------------------------ccc-CccccEEECcCCccccc
Confidence            555555555444433310                                         000 13677777777654433


Q ss_pred             hHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCC
Q 002284          694 IVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNL  773 (943)
Q Consensus       694 ~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l  773 (943)
                      .+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|......|..+..+++|+.|++++|...+..+..+..+
T Consensus       240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  319 (477)
T 2id5_A          240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV  319 (477)
T ss_dssp             CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred             CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence            33457777888888888887776666677778888888888886555556666677788888888876554444456777


Q ss_pred             CCCCceeecCCCCC
Q 002284          774 SSLQYLTIGGVPSL  787 (943)
Q Consensus       774 ~~L~~L~l~~~~~l  787 (943)
                      ++|++|++++|+..
T Consensus       320 ~~L~~L~l~~N~l~  333 (477)
T 2id5_A          320 GNLETLILDSNPLA  333 (477)
T ss_dssp             GGCCEEECCSSCEE
T ss_pred             cccCEEEccCCCcc
Confidence            88888888877743

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=4.2e-25  Score=257.60  Aligned_cols=283  Identities=18%  Similarity=0.129  Sum_probs=194.3

Q ss_pred             ccccccEEeecccCCCCCCcchhccchhhh-ccCcccEEEecCccccccC-ccccCCCCCceeecCCCcccccc-hhhhh
Q 002284           57 DIQHLRTLLPVTLLSSRPGYLARSILPRLL-KLQRLRVFSLRGYLISEVP-DSIGDLSYLRYLNLSGTQIRTLP-ESVNK  133 (943)
Q Consensus        57 ~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~  133 (943)
                      .+++++.+.+.++.       .+.+|+.++ .+++|++|+|++|.++.+| .+|+.+++|++|+|++|.|+.+| ..|++
T Consensus        49 ~l~~l~~l~l~~~~-------l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  121 (597)
T 3oja_B           49 TLNNQKIVTFKNST-------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN  121 (597)
T ss_dssp             GGCCCSEEEESSCE-------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             cCCCceEEEeeCCC-------CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence            56788888775432       567888887 8999999999999999885 58999999999999999999986 56799


Q ss_pred             ccccceeecCCCcccccccHH-HhccccCceEEcCCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccC
Q 002284          134 LYNLHTLLLEGCRELKKKCAD-MGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCG  212 (943)
Q Consensus       134 L~~L~~L~L~~n~~~~~~p~~-~~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~  212 (943)
                      +++|++|+|++|. +..+|.. |+++++|++|++++|.+.+..|..|+.+++|++|+...+.                  
T Consensus       122 l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~------------------  182 (597)
T 3oja_B          122 VPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR------------------  182 (597)
T ss_dssp             CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC------------------
T ss_pred             CCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC------------------
Confidence            9999999999997 4455555 7999999999999999555455569999999988432221                  


Q ss_pred             ceeecccccccCccchhhcccCCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccC
Q 002284          213 TLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLG  292 (943)
Q Consensus       213 ~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~  292 (943)
                            +...         .+..+++|+.|++++|.++                .+..+++|+.|+++++....+|..+ 
T Consensus       183 ------l~~~---------~~~~l~~L~~L~l~~n~l~----------------~l~~~~~L~~L~ls~n~l~~~~~~~-  230 (597)
T 3oja_B          183 ------LTHV---------DLSLIPSLFHANVSYNLLS----------------TLAIPIAVEELDASHNSINVVRGPV-  230 (597)
T ss_dssp             ------CSBC---------CGGGCTTCSEEECCSSCCS----------------EEECCTTCSEEECCSSCCCEEECSC-
T ss_pred             ------CCCc---------ChhhhhhhhhhhcccCccc----------------cccCCchhheeeccCCccccccccc-
Confidence                  1000         0334566777777766653                2233456777777777766655443 


Q ss_pred             CCCcCCeeEEEEeCCCCCCCCCCCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccC
Q 002284          293 YSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCS  372 (943)
Q Consensus       293 ~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  372 (943)
                         .++|+.|++++|.+.+ ++.++.+++|++|++++|......+..+.+      +++|+.|++++|. +..     ++
T Consensus       231 ---~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~-l~~-----l~  294 (597)
T 3oja_B          231 ---NVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVK------MQRLERLYISNNR-LVA-----LN  294 (597)
T ss_dssp             ---CSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTT------CSSCCEEECTTSC-CCE-----EE
T ss_pred             ---CCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcC------ccCCCEEECCCCC-CCC-----CC
Confidence               3577888888877765 346677777788888777655444444333      6677777777663 222     12


Q ss_pred             CccccCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEEeccCC
Q 002284          373 QEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCK  426 (943)
Q Consensus       373 ~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~  426 (943)
                      .....+++|++|++++ |.++ .+|..           +..+++|+.|++++|.
T Consensus       295 ~~~~~l~~L~~L~Ls~-N~l~-~i~~~-----------~~~l~~L~~L~L~~N~  335 (597)
T 3oja_B          295 LYGQPIPTLKVLDLSH-NHLL-HVERN-----------QPQFDRLENLYLDHNS  335 (597)
T ss_dssp             CSSSCCTTCCEEECCS-SCCC-CCGGG-----------HHHHTTCSEEECCSSC
T ss_pred             cccccCCCCcEEECCC-CCCC-ccCcc-----------cccCCCCCEEECCCCC
Confidence            3345566777777777 4555 44432           2334555555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=5.9e-24  Score=247.85  Aligned_cols=310  Identities=16%  Similarity=0.162  Sum_probs=218.0

Q ss_pred             cCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhc
Q 002284          457 QLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSL  536 (943)
Q Consensus       457 ~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  536 (943)
                      .+++++.++++     .+.+..+++..+..+++|+.|++++|. ++.++...   |..+++|++|++++|.+.+..|..+
T Consensus        49 ~l~~l~~l~l~-----~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~  119 (597)
T 3oja_B           49 TLNNQKIVTFK-----NSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYA---FAYAHTIQKLYMGFNAIRYLPPHVF  119 (597)
T ss_dssp             GGCCCSEEEES-----SCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cCCCceEEEee-----CCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHH---hcCCCCCCEEECCCCcCCCCCHHHH
Confidence            45566666666     344556666777778888888888775 55555433   7778888888888887666666677


Q ss_pred             cCCCCcCeeeccCCCCCcccCCCC--CCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCcCCCCCC
Q 002284          537 LSLSSLTEMRIHNCSSLVSFPEAV--LPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSL  614 (943)
Q Consensus       537 ~~l~~L~~L~L~~n~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L  614 (943)
                      ..+++|++|++++|. +..+|...  .+++|++|++++|...+..|..  +.++++|++|++++|.+... + ...+++|
T Consensus       120 ~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~-~-~~~l~~L  194 (597)
T 3oja_B          120 QNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT--FQATTSLQNLQLSSNRLTHV-D-LSLIPSL  194 (597)
T ss_dssp             TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT--TTTCTTCCEEECTTSCCSBC-C-GGGCTTC
T ss_pred             cCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhh--hhcCCcCcEEECcCCCCCCc-C-hhhhhhh
Confidence            788888888888885 44555543  3678888888888755444444  34778888888888765432 2 2345567


Q ss_pred             ceEEeccCcCccccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhh
Q 002284          615 KQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESI  694 (943)
Q Consensus       615 ~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~  694 (943)
                      +.|+++++ .+..+          ...++|+.|+++++. +..+              .+..+++|+.|++++|...+  
T Consensus       195 ~~L~l~~n-~l~~l----------~~~~~L~~L~ls~n~-l~~~--------------~~~~~~~L~~L~L~~n~l~~--  246 (597)
T 3oja_B          195 FHANVSYN-LLSTL----------AIPIAVEELDASHNS-INVV--------------RGPVNVELTILKLQHNNLTD--  246 (597)
T ss_dssp             SEEECCSS-CCSEE----------ECCTTCSEEECCSSC-CCEE--------------ECSCCSCCCEEECCSSCCCC--
T ss_pred             hhhhcccC-ccccc----------cCCchhheeeccCCc-cccc--------------ccccCCCCCEEECCCCCCCC--
Confidence            77777776 33322          234467777776653 2222              12344678899998886554  


Q ss_pred             HhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCC
Q 002284          695 VERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLS  774 (943)
Q Consensus       695 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~  774 (943)
                      +..+..+++|+.|++++|.+.+..|..+..+++|++|+|++| .+..+|..+..+++|+.|++++|.. ..+|..+..++
T Consensus       247 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~l~  324 (597)
T 3oja_B          247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFD  324 (597)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCC-CCCGGGHHHHT
T ss_pred             ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCC-CccCcccccCC
Confidence            356788889999999999888888888888999999999998 4566777777788999999999874 46777788888


Q ss_pred             CCCceeecCCCCCccccCCCCCCCCcceEEecCCcchhc
Q 002284          775 SLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKS  813 (943)
Q Consensus       775 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~  813 (943)
                      +|++|++++|.. ..++  ...+++|+.|++++|+....
T Consensus       325 ~L~~L~L~~N~l-~~~~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          325 RLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             TCSEEECCSSCC-CCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCEEECCCCCC-CCcC--hhhcCCCCEEEeeCCCCCCh
Confidence            999999988874 4444  23358888888888886543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.90  E-value=2.3e-23  Score=224.40  Aligned_cols=194  Identities=19%  Similarity=0.175  Sum_probs=116.0

Q ss_pred             CcccEEEecCccccccCccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHhccccCceEEcC
Q 002284           89 QRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNS  167 (943)
Q Consensus        89 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~  167 (943)
                      .++++++++++.++.+|..+.  ++|++|++++|.|+.+| ..|+++++|++|++++|.+.+..|..|+++++|++|+++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            367888888888888877664  57888888888888774 577888888888888877555557778888888888888


Q ss_pred             CCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEee
Q 002284          168 NTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWT  247 (943)
Q Consensus       168 ~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n  247 (943)
                      +|. +..+|..+.  ++|++|+...+                        .+.      ......+.++++|+.|++++|
T Consensus       111 ~n~-l~~l~~~~~--~~L~~L~l~~n------------------------~i~------~~~~~~~~~l~~L~~L~l~~n  157 (332)
T 2ft3_A          111 KNH-LVEIPPNLP--SSLVELRIHDN------------------------RIR------KVPKGVFSGLRNMNCIEMGGN  157 (332)
T ss_dssp             SSC-CCSCCSSCC--TTCCEEECCSS------------------------CCC------CCCSGGGSSCSSCCEEECCSC
T ss_pred             CCc-CCccCcccc--ccCCEEECCCC------------------------ccC------ccCHhHhCCCccCCEEECCCC
Confidence            887 666776544  45555521111                        110      001112556667777777766


Q ss_pred             cCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCeeE
Q 002284          248 RSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLE  326 (943)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~  326 (943)
                      .++..         ......+..+ +|+.|+++++....+|..+    .++|++|++++|.+.+..+ .+..+++|++|+
T Consensus       158 ~l~~~---------~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~  223 (332)
T 2ft3_A          158 PLENS---------GFEPGAFDGL-KLNYLRISEAKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLG  223 (332)
T ss_dssp             CCBGG---------GSCTTSSCSC-CCSCCBCCSSBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCB
T ss_pred             ccccC---------CCCcccccCC-ccCEEECcCCCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            65310         0011222333 5555555555555555433    2455566666665555443 455555555555


Q ss_pred             EecCc
Q 002284          327 VRGMS  331 (943)
Q Consensus       327 L~~~~  331 (943)
                      +++|.
T Consensus       224 L~~N~  228 (332)
T 2ft3_A          224 LGHNQ  228 (332)
T ss_dssp             CCSSC
T ss_pred             CCCCc
Confidence            55554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.90  E-value=1.9e-24  Score=229.83  Aligned_cols=249  Identities=18%  Similarity=0.186  Sum_probs=140.5

Q ss_pred             CceeEEEEEeccCcc--ccccccccccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCcccc-ccCccccC
Q 002284           34 RNLHHLSYIRGDYDG--VKRFEDLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLIS-EVPDSIGD  110 (943)
Q Consensus        34 ~~~~~ls~~~~~~~~--~~~~~~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~-~lp~~~~~  110 (943)
                      .+++++.+..+.+..  .. ...+.++++|++|.+.+     +|.+.+.+|..+.++++|++|++++|.++ .+|..|.+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~-~~~l~~l~~L~~L~L~~-----~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  123 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPI-PSSLANLPYLNFLYIGG-----INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ  123 (313)
T ss_dssp             CCEEEEEEECCCCSSCEEC-CGGGGGCTTCSEEEEEE-----ETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred             ceEEEEECCCCCccCCccc-ChhHhCCCCCCeeeCCC-----CCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence            566777666655432  11 13455566666665542     12345555666556666666666666665 45666666


Q ss_pred             CCCCceeecCCCccc-ccchhhhhccccceeecCCCcccccccHHHhccc-cCceEEcCCCCCCcccccccccccccccc
Q 002284          111 LSYLRYLNLSGTQIR-TLPESVNKLYNLHTLLLEGCRELKKKCADMGNLI-KLHHLNNSNTDSLEEMPLGIGKLTCLLTL  188 (943)
Q Consensus       111 l~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~-~L~~L~l~~n~~~~~~p~~~~~L~~L~~L  188 (943)
                      +++|++|+|++|.+. .+|..|+.+++|++|++++|.+.+.+|..+++++ +|++|++++|.+.+.+|..++.++ |+.|
T Consensus       124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L  202 (313)
T 1ogq_A          124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV  202 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred             CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence            666666666666666 4566666666666666666655556666666665 666666666664445555555554 4444


Q ss_pred             CceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccC
Q 002284          189 CNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDML  268 (943)
Q Consensus       189 ~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l  268 (943)
                                                                            ++++|.+++.           ....+
T Consensus       203 ------------------------------------------------------~Ls~N~l~~~-----------~~~~~  217 (313)
T 1ogq_A          203 ------------------------------------------------------DLSRNMLEGD-----------ASVLF  217 (313)
T ss_dssp             ------------------------------------------------------ECCSSEEEEC-----------CGGGC
T ss_pred             ------------------------------------------------------ECcCCcccCc-----------CCHHH
Confidence                                                                  3333332110           11223


Q ss_pred             CCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCeeEEecCcCceeeCccccCCCCCC
Q 002284          269 KPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPI  347 (943)
Q Consensus       269 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~  347 (943)
                      ..+++|+.|+++++.....+..+.  .+++|++|++++|.+.+.+| .+..+++|++|++++|+..+.++..  +     
T Consensus       218 ~~l~~L~~L~L~~N~l~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~-----  288 (313)
T 1ogq_A          218 GSDKNTQKIHLAKNSLAFDLGKVG--LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--G-----  288 (313)
T ss_dssp             CTTSCCSEEECCSSEECCBGGGCC--CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS--T-----
T ss_pred             hcCCCCCEEECCCCceeeecCccc--ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC--c-----
Confidence            333444444444443332222222  26677777777777766666 6677777777777777655454432  2     


Q ss_pred             CCCCcceeeccccccc
Q 002284          348 PFPCLETLHFAEMQEW  363 (943)
Q Consensus       348 ~~~~L~~L~l~~~~~l  363 (943)
                      .+++|+.+++.+|+.+
T Consensus       289 ~l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          289 NLQRFDVSAYANNKCL  304 (313)
T ss_dssp             TGGGSCGGGTCSSSEE
T ss_pred             cccccChHHhcCCCCc
Confidence            1777777777777633

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.89  E-value=4e-22  Score=214.52  Aligned_cols=267  Identities=15%  Similarity=0.168  Sum_probs=148.0

Q ss_pred             cccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCCCCCccE
Q 002284          488 ATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRV  567 (943)
Q Consensus       488 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~  567 (943)
                      ++++.|++++|. ++.++...   |..+++|++|++++|.+.+..|..+..+++|++|++++|. ++.+|... +++|++
T Consensus        52 ~~l~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~-~~~L~~  125 (330)
T 1xku_A           52 PDTALLDLQNNK-ITEIKDGD---FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM-PKTLQE  125 (330)
T ss_dssp             TTCCEEECCSSC-CCCBCTTT---TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSC-CTTCCE
T ss_pred             CCCeEEECCCCc-CCEeChhh---hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhh-cccccE
Confidence            456677777764 55555543   7788888888888887776668888888899999998886 45666543 378888


Q ss_pred             EEEecCCCCCcCccccccCCCCCccEEEeecCCCcc--ccc-CcCCCCCCceEEeccCcCccccccccCcccccccCCcc
Q 002284          568 ISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLT--YIA-GVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLL  644 (943)
Q Consensus       568 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~-~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L  644 (943)
                      |++++|......+..  +.++++|++|++++|.+..  ..+ .....++|+.|+++++ .++.++.              
T Consensus       126 L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~--------------  188 (330)
T 1xku_A          126 LRVHENEITKVRKSV--FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQ--------------  188 (330)
T ss_dssp             EECCSSCCCBBCHHH--HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCS--------------
T ss_pred             EECCCCcccccCHhH--hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCc--------------
Confidence            888888754433333  3578888888888887542  111 1122334444444443 1222210              


Q ss_pred             ceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccC
Q 002284          645 ECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHK  724 (943)
Q Consensus       645 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~  724 (943)
                                                    .++++|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..
T Consensus       189 ------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  238 (330)
T 1xku_A          189 ------------------------------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN  238 (330)
T ss_dssp             ------------------------------SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             ------------------------------cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence                                          01134555555554433333334444444444444444444433334444


Q ss_pred             CCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCC-------CC
Q 002284          725 LWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGL-------FP  797 (943)
Q Consensus       725 l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~-------~~  797 (943)
                                              +++|++|++++|. +..+|.++..+++|++|++++|+ ++.++...+       ..
T Consensus       239 ------------------------l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~  292 (330)
T 1xku_A          239 ------------------------TPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKK  292 (330)
T ss_dssp             ------------------------STTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTS
T ss_pred             ------------------------CCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCc-CCccChhhcCCccccccc
Confidence                                    4455555555543 23444445555555555555544 233322211       12


Q ss_pred             CCcceEEecCCcchhccccccCCCCCCCccEEEecC
Q 002284          798 TNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISG  833 (943)
Q Consensus       798 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~  833 (943)
                      +.|+.|++++|+..........+..+++|+.+++++
T Consensus       293 ~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~  328 (330)
T 1xku_A          293 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN  328 (330)
T ss_dssp             CCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred             ccccceEeecCcccccccCccccccccceeEEEecc
Confidence            556666666666543322233566677777777765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.89  E-value=2.2e-22  Score=216.72  Aligned_cols=273  Identities=17%  Similarity=0.141  Sum_probs=152.1

Q ss_pred             cccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCCCCCccE
Q 002284          488 ATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRV  567 (943)
Q Consensus       488 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~  567 (943)
                      ++++.|++++|. ++.++...   |..+++|++|++++|.+.+..|.++..+++|++|++++|. ++.+|.... ++|++
T Consensus        54 ~~l~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~-~~L~~  127 (332)
T 2ft3_A           54 PDTTLLDLQNND-ISELRKDD---FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP-SSLVE  127 (332)
T ss_dssp             TTCCEEECCSSC-CCEECTTT---TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC-TTCCE
T ss_pred             CCCeEEECCCCc-CCccCHhH---hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc-ccCCE
Confidence            466777777774 55555433   7888889999999887776668888889999999999886 456665444 78999


Q ss_pred             EEEecCCCCCcCccccccCCCCCccEEEeecCCCcc--cccCc-CCCCCCceEEeccCcCccccccccCcccccccCCcc
Q 002284          568 ISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLT--YIAGV-QLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLL  644 (943)
Q Consensus       568 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~-~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L  644 (943)
                      |++++|... .++... +.++++|++|++++|.+..  ..+.. ... +|+.|+++++ .++.++.              
T Consensus       128 L~l~~n~i~-~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~--------------  189 (332)
T 2ft3_A          128 LRIHDNRIR-KVPKGV-FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPK--------------  189 (332)
T ss_dssp             EECCSSCCC-CCCSGG-GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCS--------------
T ss_pred             EECCCCccC-ccCHhH-hCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCc--------------
Confidence            999988844 444432 4578999999999987642  11111 111 4555555554 2222221              


Q ss_pred             ceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccC
Q 002284          645 ECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHK  724 (943)
Q Consensus       645 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~  724 (943)
                                                    .++++|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..
T Consensus       190 ------------------------------~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  239 (332)
T 2ft3_A          190 ------------------------------DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF  239 (332)
T ss_dssp             ------------------------------SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred             ------------------------------cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence                                          11134555555554433333334444555555555555444444444445


Q ss_pred             CCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceEE
Q 002284          725 LWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLE  804 (943)
Q Consensus       725 l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~  804 (943)
                      +++|++|++++| .++.+|..+..+++|+.|++++|+..+.-+..+....                  .....+.|+.|+
T Consensus       240 l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~------------------~~~~~~~l~~L~  300 (332)
T 2ft3_A          240 LPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG------------------FGVKRAYYNGIS  300 (332)
T ss_dssp             CTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS------------------CCSSSCCBSEEE
T ss_pred             CCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCCCCccChhHccccc------------------cccccccccceE
Confidence            555555555554 2334444444444555555555443222222221110                  000124566666


Q ss_pred             ecCCcchhccccccCCCCCCCccEEEecC
Q 002284          805 IDGMKIWKSLMQLGGFHRYTSLRRLAISG  833 (943)
Q Consensus       805 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~  833 (943)
                      +++|+..........+..+++|+.+++++
T Consensus       301 l~~N~~~~~~~~~~~~~~l~~L~~l~l~~  329 (332)
T 2ft3_A          301 LFNNPVPYWEVQPATFRCVTDRLAIQFGN  329 (332)
T ss_dssp             CCSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred             eecCcccccccCcccccccchhhhhhccc
Confidence            66666543222233566677777777766

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=8.5e-23  Score=218.36  Aligned_cols=191  Identities=21%  Similarity=0.296  Sum_probs=140.2

Q ss_pred             ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284           87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN  166 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l  166 (943)
                      ...++++|+|++|.++.+|..++++++|++|+|++|.++.+|..++++++|++|++++|. +..+|..|+++++|++|++
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI  157 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence            568999999999999999999999999999999999999999999999999999999997 4588999999999999999


Q ss_pred             CCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEe
Q 002284          167 SNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEW  246 (943)
Q Consensus       167 ~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  246 (943)
                      ++|...+.+|..++...-                                             ...+.++++|+.|++++
T Consensus       158 ~~n~~~~~~p~~~~~~~~---------------------------------------------~~~~~~l~~L~~L~L~~  192 (328)
T 4fcg_A          158 RACPELTELPEPLASTDA---------------------------------------------SGEHQGLVNLQSLRLEW  192 (328)
T ss_dssp             EEETTCCCCCSCSEEEC----------------------------------------------CCCEEESTTCCEEEEEE
T ss_pred             CCCCCccccChhHhhccc---------------------------------------------hhhhccCCCCCEEECcC
Confidence            998878888876543110                                             01144567778888887


Q ss_pred             ecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCee
Q 002284          247 TRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHL  325 (943)
Q Consensus       247 n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L  325 (943)
                      |.++.++            ..+..+++|+.|+++++....+|..+..  +++|++|++++|.+.+.+| .++.+++|++|
T Consensus       193 n~l~~lp------------~~l~~l~~L~~L~L~~N~l~~l~~~l~~--l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L  258 (328)
T 4fcg_A          193 TGIRSLP------------ASIANLQNLKSLKIRNSPLSALGPAIHH--LPKLEELDLRGCTALRNYPPIFGGRAPLKRL  258 (328)
T ss_dssp             ECCCCCC------------GGGGGCTTCCEEEEESSCCCCCCGGGGG--CTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred             CCcCcch------------HhhcCCCCCCEEEccCCCCCcCchhhcc--CCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence            7764221            2234455666666666665555555433  5666666666666666555 55666666666


Q ss_pred             EEecCcCceeeC
Q 002284          326 EVRGMSRVKRLG  337 (943)
Q Consensus       326 ~L~~~~~~~~~~  337 (943)
                      ++++|...+.++
T Consensus       259 ~L~~n~~~~~~p  270 (328)
T 4fcg_A          259 ILKDCSNLLTLP  270 (328)
T ss_dssp             ECTTCTTCCBCC
T ss_pred             ECCCCCchhhcc
Confidence            666665444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.89  E-value=1.8e-22  Score=217.33  Aligned_cols=137  Identities=12%  Similarity=0.095  Sum_probs=91.4

Q ss_pred             CCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCeeEEecCcCceeeCccccCCCCC
Q 002284          268 LKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSP  346 (943)
Q Consensus       268 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~  346 (943)
                      +..+++|+.|+++++....+|..+    .++|++|++++|.+.+..+ .+..+++|++|++++|......+..+..    
T Consensus       167 ~~~l~~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----  238 (330)
T 1xku_A          167 FQGMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN----  238 (330)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG----
T ss_pred             ccCCCCcCEEECCCCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC----
Confidence            444566777777776666676654    3788899999988877666 7888889999999888754433333333    


Q ss_pred             CCCCCcceeecccccccccccccccCCccccCCcccEEeeccCCCccCCCCC-CCCCccEEEEeccCCCCccceEEeccC
Q 002284          347 IPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPT-HLTLLDILVVQNFTSLPALCKLRIDRC  425 (943)
Q Consensus       347 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~-~l~~L~~L~~~~~~~l~~L~~L~l~~~  425 (943)
                        +++|++|++++|. +..     +|..+..+++|++|++++ |+++ .+|. .+.....     ....+.++.+++.+|
T Consensus       239 --l~~L~~L~L~~N~-l~~-----lp~~l~~l~~L~~L~l~~-N~i~-~~~~~~f~~~~~-----~~~~~~l~~l~l~~N  303 (330)
T 1xku_A          239 --TPHLRELHLNNNK-LVK-----VPGGLADHKYIQVVYLHN-NNIS-AIGSNDFCPPGY-----NTKKASYSGVSLFSN  303 (330)
T ss_dssp             --STTCCEEECCSSC-CSS-----CCTTTTTCSSCCEEECCS-SCCC-CCCTTSSSCSSC-----CTTSCCCSEEECCSS
T ss_pred             --CCCCCEEECCCCc-Ccc-----CChhhccCCCcCEEECCC-CcCC-ccChhhcCCccc-----ccccccccceEeecC
Confidence              7888888888874 222     455677888999999998 6787 4543 2211100     112456677777777


Q ss_pred             Cc
Q 002284          426 KK  427 (943)
Q Consensus       426 ~~  427 (943)
                      +.
T Consensus       304 ~~  305 (330)
T 1xku_A          304 PV  305 (330)
T ss_dssp             SS
T ss_pred             cc
Confidence            64

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.87  E-value=1.4e-22  Score=215.55  Aligned_cols=252  Identities=12%  Similarity=0.044  Sum_probs=139.0

Q ss_pred             cccCeEEeecCCCcc--cchhhhhhhcCccceeceEEEec-CCCcCccchhccCCCCcCeeeccCCCCCcccCCC-CCCC
Q 002284          488 ATLKRLKIERCPKLQ--FLEEEDQWQFGLSFRLEHLELIN-CQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEA-VLPS  563 (943)
Q Consensus       488 ~~L~~L~l~~~~~l~--~l~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~-~~~~  563 (943)
                      .+++.|++++|..-.  .++..    +..+++|++|++++ |.+.+.+|..+..+++|++|++++|...+.+|.. ..++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~----l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSS----LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGG----GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             ceEEEEECCCCCccCCcccChh----HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence            456666666664322  33332    56666666666663 5555566666666666666666666544344432 2245


Q ss_pred             CccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCcCCCCCCceEEeccCcCccccccccCcccccccCCc
Q 002284          564 QLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSL  643 (943)
Q Consensus       564 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~  643 (943)
                      +|++|++++|...+.+|..+  ..+++|++|++++|.+.+.+|..                                   
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~-----------------------------------  168 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSI--SSLPNLVGITFDGNRISGAIPDS-----------------------------------  168 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGG--GGCTTCCEEECCSSCCEEECCGG-----------------------------------
T ss_pred             CCCEEeCCCCccCCcCChHH--hcCCCCCeEECcCCcccCcCCHH-----------------------------------
Confidence            56666666665444455442  25566666666665544333221                                   


Q ss_pred             cceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCccccccccc
Q 002284          644 LECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLH  723 (943)
Q Consensus       644 L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~  723 (943)
                                                   .+.+++.|++|++++|...+.+|..+..++ |++|++++|.+.+..|..+.
T Consensus       169 -----------------------------l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~  218 (313)
T 1ogq_A          169 -----------------------------YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFG  218 (313)
T ss_dssp             -----------------------------GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCC
T ss_pred             -----------------------------HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHh
Confidence                                         111212455555555544444455555554 66666666666655666666


Q ss_pred             CCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceE
Q 002284          724 KLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSL  803 (943)
Q Consensus       724 ~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L  803 (943)
                      .+++|++|++++|...+.+|. +..+++|++|++++|...+.+|..+..+++|++|++++|+....+|.. ..+++|+.+
T Consensus       219 ~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l  296 (313)
T 1ogq_A          219 SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS  296 (313)
T ss_dssp             TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGG
T ss_pred             cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChH
Confidence            666666666666644333333 444566666666666655566666666666666666666544455544 335666666


Q ss_pred             EecCCcchh
Q 002284          804 EIDGMKIWK  812 (943)
Q Consensus       804 ~l~~c~~l~  812 (943)
                      ++++|+.+.
T Consensus       297 ~l~~N~~lc  305 (313)
T 1ogq_A          297 AYANNKCLC  305 (313)
T ss_dssp             GTCSSSEEE
T ss_pred             HhcCCCCcc
Confidence            666665443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.87  E-value=2e-23  Score=244.91  Aligned_cols=84  Identities=23%  Similarity=0.243  Sum_probs=48.5

Q ss_pred             ccCcccEEEecCcccccc-CccccCC--CCCceeecCCCc-cc--ccchhhhhccccceeecCCCccccc----ccHHHh
Q 002284           87 KLQRLRVFSLRGYLISEV-PDSIGDL--SYLRYLNLSGTQ-IR--TLPESVNKLYNLHTLLLEGCRELKK----KCADMG  156 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~l-p~~~~~l--~~L~~L~Ls~n~-i~--~lp~~i~~L~~L~~L~L~~n~~~~~----~p~~~~  156 (943)
                      .+++|++|+|++|.++.. +..+...  .+|++|+|++|. +.  .++..+.++++|++|+|++|...+.    ++..+.
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            667777777777665432 3334332  337777777664 22  2233345667777777777654333    334455


Q ss_pred             ccccCceEEcCCCC
Q 002284          157 NLIKLHHLNNSNTD  170 (943)
Q Consensus       157 ~L~~L~~L~l~~n~  170 (943)
                      .+++|++|++++|.
T Consensus       190 ~~~~L~~L~L~~n~  203 (592)
T 3ogk_B          190 HNTSLEVLNFYMTE  203 (592)
T ss_dssp             HCCCCCEEECTTCC
T ss_pred             cCCCccEEEeeccC
Confidence            66777777777666

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.86  E-value=3.4e-23  Score=243.00  Aligned_cols=377  Identities=16%  Similarity=0.110  Sum_probs=185.1

Q ss_pred             cCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCc-cceEEeccCCceeeecc----CcccchhhhccccccccC
Q 002284          377 GFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPA-LCKLRIDRCKKVVWRST----TDCESQLYKDISNQMFLG  451 (943)
Q Consensus       377 ~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~-L~~L~l~~~~~~~~~~~----~~~~~l~~l~ls~n~l~~  451 (943)
                      .+++|++|++++| .+++..+..+.          ..++. |++|++.+|.......+    ..+++|++|++++|.+++
T Consensus       110 ~~~~L~~L~L~~~-~i~~~~~~~l~----------~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~  178 (592)
T 3ogk_B          110 NLRQLKSVHFRRM-IVSDLDLDRLA----------KARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSE  178 (592)
T ss_dssp             HCTTCCEEEEESC-BCCHHHHHHHH----------HHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEEC
T ss_pred             hCCCCCeEEeecc-EecHHHHHHHH----------HhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccC
Confidence            5777888888774 44422221110          11334 77777777764432222    134444555555444433


Q ss_pred             CCccccCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchh-hhhhhcCccceeceEEEecCCCcC
Q 002284          452 GPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEE-EDQWQFGLSFRLEHLELINCQDLE  530 (943)
Q Consensus       452 ~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~l~~L~~L~l~~~~~~~  530 (943)
                      ....                       .-......+++|++|++++|. ++.+.. .....+..+++|++|++++|... 
T Consensus       179 ~~~~-----------------------~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-  233 (592)
T 3ogk_B          179 KDGK-----------------------WLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFEIL-  233 (592)
T ss_dssp             CCSH-----------------------HHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCBGG-
T ss_pred             cchh-----------------------HHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCccHH-
Confidence            2100                       011233456666666666664 221111 11111455677777777777543 


Q ss_pred             ccchhccCCCCcCeeeccCCCCCcc----cCCCCCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCccccc
Q 002284          531 KLPKSLLSLSSLTEMRIHNCSSLVS----FPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIA  606 (943)
Q Consensus       531 ~~~~~~~~l~~L~~L~L~~n~~l~~----~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  606 (943)
                      .+|..+..+++|++|+++++.....    ......+++|+.++++++. ...++..  +..+++|++|++++|.+.....
T Consensus       234 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~--~~~~~~L~~L~Ls~~~l~~~~~  310 (592)
T 3ogk_B          234 ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPIL--FPFAAQIRKLDLLYALLETEDH  310 (592)
T ss_dssp             GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGG--GGGGGGCCEEEETTCCCCHHHH
T ss_pred             HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHH--HhhcCCCcEEecCCCcCCHHHH
Confidence            3666677777777777775332211    1112335677777777653 3444444  2367788888888877332211


Q ss_pred             -C-cCCCCCCceEEeccCcCccccccccCcccccccCCccceeeeec----------CCCcccccchhhHHHHhhhhhcC
Q 002284          607 -G-VQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHS----------CPSLTCLISKNELRAALDYLVVG  674 (943)
Q Consensus       607 -~-~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~----------c~~l~~~~~~~~~~~~~~~~~~~  674 (943)
                       . ...+++|+.|++.++  +..    .+.......+++|+.|++.+          |..++..    .+....     .
T Consensus       311 ~~~~~~~~~L~~L~L~~~--~~~----~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~----~~~~l~-----~  375 (592)
T 3ogk_B          311 CTLIQKCPNLEVLETRNV--IGD----RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR----GLIALA-----Q  375 (592)
T ss_dssp             HHHHTTCTTCCEEEEEGG--GHH----HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH----HHHHHH-----H
T ss_pred             HHHHHhCcCCCEEeccCc--cCH----HHHHHHHHhCCCCCEEEeecCccccccccccCccCHH----HHHHHH-----h
Confidence             1 244567888877743  111    11112224566677777774          5554422    010000     1


Q ss_pred             CCcccccEEEeecCCCchhhHhhhcc-cccccEEEeec---cCCccc------ccccccCCCCccEEeccCCCC--Cccc
Q 002284          675 NLPQALKFLSIWHCSKLESIVERLDN-KISLEVIEIVS---CENLKM------LPHGLHKLWHLQEIDIQDCEN--LVSF  742 (943)
Q Consensus       675 ~lp~~L~~L~l~~~~~l~~~~~~~~~-l~~L~~L~l~~---~~~~~~------~p~~~~~l~~L~~L~l~~~~~--l~~~  742 (943)
                      .+ ++|++|+++.+......+..+.. +++|+.|++++   |+.++.      ++..+.++++|++|++++|..  ....
T Consensus       376 ~~-~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~  454 (592)
T 3ogk_B          376 GC-QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG  454 (592)
T ss_dssp             HC-TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred             hC-ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence            12 45777777554444444444433 66677777763   223332      222344566677777665532  1111


Q ss_pred             CcCC-ccccccceeeeccccCCc-cCCCcCCCCCCCCceeecCCCCCcc--ccCCCCCCCCcceEEecCCc
Q 002284          743 PEGG-LLSAKLKRLVIYGCKKLE-ALPEGMHNLSSLQYLTIGGVPSLLC--FTEDGLFPTNLHSLEIDGMK  809 (943)
Q Consensus       743 p~~~-~~l~~L~~L~l~~~~~l~-~~p~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~c~  809 (943)
                      +..+ ..+++|+.|++++|...+ .++..+..+++|++|++++|+ ++.  ++.....+++|++|++++|+
T Consensus       455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence            1111 124566666666665433 223333555666666666665 221  11111123555555555555

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.86  E-value=7.4e-21  Score=203.27  Aligned_cols=229  Identities=23%  Similarity=0.265  Sum_probs=135.2

Q ss_pred             cceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCC-CCCCCccEEEEecCCCCCcCccccccCCCCCccE
Q 002284          515 SFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEA-VLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEI  593 (943)
Q Consensus       515 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~  593 (943)
                      .++++.|++++|.+. .+|..+..+++|++|++++|... .+|.. ..+++|++|++++|... .+|..+  .++++|++
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l--~~l~~L~~  154 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI--ASLNRLRE  154 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG--GGCTTCCE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH--hcCcCCCE
Confidence            356777777777543 66666667777777777777543 55542 23566777777776633 566553  46788888


Q ss_pred             EEeecCCCcccccCcCCCCCCceEEeccCcCccccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhc
Q 002284          594 LDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVV  673 (943)
Q Consensus       594 L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~  673 (943)
                      |++++|...+.+|..     +....+.+                                                  .+
T Consensus       155 L~L~~n~~~~~~p~~-----~~~~~~~~--------------------------------------------------~~  179 (328)
T 4fcg_A          155 LSIRACPELTELPEP-----LASTDASG--------------------------------------------------EH  179 (328)
T ss_dssp             EEEEEETTCCCCCSC-----SEEEC-CC--------------------------------------------------CE
T ss_pred             EECCCCCCccccChh-----Hhhccchh--------------------------------------------------hh
Confidence            888887766544421     11111100                                                  00


Q ss_pred             CCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccc
Q 002284          674 GNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLK  753 (943)
Q Consensus       674 ~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~  753 (943)
                      ..+ ++|++|++++|.. +.+|..+..+++|++|++++|.+.+ +|..+..+++|++|++++|...+.+|..+..+++|+
T Consensus       180 ~~l-~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~  256 (328)
T 4fcg_A          180 QGL-VNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK  256 (328)
T ss_dssp             EES-TTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred             ccC-CCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence            011 3566666666533 3555556666666666666666554 444566666666666666666666666666666666


Q ss_pred             eeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceEEec
Q 002284          754 RLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEID  806 (943)
Q Consensus       754 ~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~  806 (943)
                      +|++++|...+.+|..+..+++|++|++++|+.++.+|.....+++|+.+++.
T Consensus       257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             EEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence            66666666666666666666666666666666666666554444444444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.85  E-value=1.6e-20  Score=203.99  Aligned_cols=87  Identities=18%  Similarity=0.249  Sum_probs=58.0

Q ss_pred             ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccch-hhhhccccceeecCCCcccccccHHHhccccCceEE
Q 002284           87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPE-SVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLN  165 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~  165 (943)
                      .++...+.+++++.++.+|..+.  ++|++|++++|.++.+|. .|+++++|++|++++|.+.+..|..|+++++|++|+
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            45555566777777777776554  367777777777777754 677777777777777765454455677777777777


Q ss_pred             cCCCCCCcccc
Q 002284          166 NSNTDSLEEMP  176 (943)
Q Consensus       166 l~~n~~~~~~p  176 (943)
                      +++|. +..+|
T Consensus       107 Ls~n~-l~~~~  116 (353)
T 2z80_A          107 LSYNY-LSNLS  116 (353)
T ss_dssp             CCSSC-CSSCC
T ss_pred             CCCCc-CCcCC
Confidence            77776 44443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.83  E-value=2.1e-22  Score=228.31  Aligned_cols=84  Identities=20%  Similarity=0.255  Sum_probs=43.1

Q ss_pred             ccCcccEEEecCcccc-----ccCccccCCCCCceeecCCCccccc-chhh-hhcc----ccceeecCCCcccc----cc
Q 002284           87 KLQRLRVFSLRGYLIS-----EVPDSIGDLSYLRYLNLSGTQIRTL-PESV-NKLY----NLHTLLLEGCRELK----KK  151 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~-----~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~i-~~L~----~L~~L~L~~n~~~~----~~  151 (943)
                      .+++|++|++++|.++     .++..+..+++|++|+|++|.+... +..+ ..+.    +|++|++++|.+..    .+
T Consensus        26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l  105 (461)
T 1z7x_W           26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  105 (461)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence            5555555555555544     2344455555555555555555432 2222 2233    45555555554331    33


Q ss_pred             cHHHhccccCceEEcCCCC
Q 002284          152 CADMGNLIKLHHLNNSNTD  170 (943)
Q Consensus       152 p~~~~~L~~L~~L~l~~n~  170 (943)
                      |..+.++++|++|++++|.
T Consensus       106 ~~~l~~~~~L~~L~Ls~n~  124 (461)
T 1z7x_W          106 SSTLRTLPTLQELHLSDNL  124 (461)
T ss_dssp             HHHTTSCTTCCEEECCSSB
T ss_pred             HHHHccCCceeEEECCCCc
Confidence            5555555555555555555

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.82  E-value=3.9e-23  Score=234.34  Aligned_cols=36  Identities=8%  Similarity=0.015  Sum_probs=25.6

Q ss_pred             cCCeeEEEEeCCCCCCCCC--CCCCCCCCCeeEEecCc
Q 002284          296 FSNLVTLKFQDCSMCTSMP--SVGQLPSLKHLEVRGMS  331 (943)
Q Consensus       296 l~~L~~L~L~~n~~~~~~~--~~~~l~~L~~L~L~~~~  331 (943)
                      .++|++|++++|.+.....  .+..+++|++|++++|.
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~   39 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG   39 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC
Confidence            4568888888888754322  25667788888888876

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=1.7e-19  Score=207.21  Aligned_cols=81  Identities=19%  Similarity=0.201  Sum_probs=59.9

Q ss_pred             ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284           87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN  166 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l  166 (943)
                      ....+++|++++|.++.+|..+.  ++|++|+|++|.|+.+|.   .+++|++|++++|. +..+|.   .+++|++|++
T Consensus        38 ~~~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           38 LNNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSI  108 (622)
T ss_dssp             HHHCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEE
T ss_pred             cCCCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEEC
Confidence            33457888888888888887665  688888888888888876   56788888888875 555665   6778888888


Q ss_pred             CCCCCCccccc
Q 002284          167 SNTDSLEEMPL  177 (943)
Q Consensus       167 ~~n~~~~~~p~  177 (943)
                      ++|. +..+|.
T Consensus       109 s~N~-l~~l~~  118 (622)
T 3g06_A          109 FSNP-LTHLPA  118 (622)
T ss_dssp             CSCC-CCCCCC
T ss_pred             cCCc-CCCCCC
Confidence            8877 555543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.81  E-value=2.9e-19  Score=201.06  Aligned_cols=108  Identities=27%  Similarity=0.392  Sum_probs=68.5

Q ss_pred             cCCeeEEEEeCCCCCCCCCCCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCcc
Q 002284          296 FSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEI  375 (943)
Q Consensus       296 l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  375 (943)
                      +++|++|++++|.+.+ +|.+..+++|++|++++|......+..+.+      +++|+.|++++|. +...    .+..+
T Consensus       195 l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~L~~n~-l~~~----~~~~~  262 (452)
T 3zyi_A          195 LFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFPEIRPGSFHG------LSSLKKLWVMNSQ-VSLI----ERNAF  262 (452)
T ss_dssp             CTTCCEEECTTSCCSS-CCCCTTCTTCCEEECTTSCCSEECGGGGTT------CTTCCEEECTTSC-CCEE----CTTTT
T ss_pred             CCCCCEEECCCCcccc-cccccccccccEEECcCCcCcccCcccccC------ccCCCEEEeCCCc-CceE----CHHHh
Confidence            5666666666666643 355666667777777776644443333333      6667777776664 2221    24556


Q ss_pred             ccCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEEeccCCc
Q 002284          376 EGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKK  427 (943)
Q Consensus       376 ~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~  427 (943)
                      ..+++|++|++++ |+++ .+|...          +..+++|+.|++++|+.
T Consensus       263 ~~l~~L~~L~L~~-N~l~-~~~~~~----------~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          263 DGLASLVELNLAH-NNLS-SLPHDL----------FTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             TTCTTCCEEECCS-SCCS-CCCTTS----------STTCTTCCEEECCSSCE
T ss_pred             cCCCCCCEEECCC-CcCC-ccChHH----------hccccCCCEEEccCCCc
Confidence            7788888888888 6787 566544          55677788888877763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.81  E-value=4e-19  Score=199.10  Aligned_cols=233  Identities=24%  Similarity=0.277  Sum_probs=123.2

Q ss_pred             ccchhhhccCcccEEEecCcccccc-CccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHhc
Q 002284           80 SILPRLLKLQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMGN  157 (943)
Q Consensus        80 ~~~~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~~  157 (943)
                      .+|.++.  +.+++|+|++|.++.+ +..|.++++|++|+|++|.|+.++ ..|.++++|++|+|++|.+....+..|..
T Consensus        57 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  134 (440)
T 3zyj_A           57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY  134 (440)
T ss_dssp             SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred             cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhc
Confidence            4454443  4556666666666655 345566666666666666666553 45566666666666665433222234666


Q ss_pred             cccCceEEcCCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCC
Q 002284          158 LIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKK  237 (943)
Q Consensus       158 L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~  237 (943)
                      +++|++|++++|. +..+|..                                                     .+..++
T Consensus       135 l~~L~~L~L~~N~-i~~~~~~-----------------------------------------------------~~~~l~  160 (440)
T 3zyj_A          135 LSKLKELWLRNNP-IESIPSY-----------------------------------------------------AFNRIP  160 (440)
T ss_dssp             CSSCCEEECCSCC-CCEECTT-----------------------------------------------------TTTTCT
T ss_pred             cccCceeeCCCCc-ccccCHH-----------------------------------------------------HhhhCc
Confidence            6666666666665 3333321                                                     133344


Q ss_pred             CCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCCCCC
Q 002284          238 NLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVG  317 (943)
Q Consensus       238 ~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~~~~  317 (943)
                      +|+.|+++.+.....          .....+..                         +++|++|++++|.+. .+|.+.
T Consensus       161 ~L~~L~l~~~~~l~~----------i~~~~~~~-------------------------l~~L~~L~L~~n~l~-~~~~~~  204 (440)
T 3zyj_A          161 SLRRLDLGELKRLSY----------ISEGAFEG-------------------------LSNLRYLNLAMCNLR-EIPNLT  204 (440)
T ss_dssp             TCCEEECCCCTTCCE----------ECTTTTTT-------------------------CSSCCEEECTTSCCS-SCCCCT
T ss_pred             ccCEeCCCCCCCcce----------eCcchhhc-------------------------ccccCeecCCCCcCc-cccccC
Confidence            555555544221100          00012333                         455555555555553 334455


Q ss_pred             CCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCcccEEeeccCCCccCCCC
Q 002284          318 QLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLP  397 (943)
Q Consensus       318 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p  397 (943)
                      .+++|++|++++|......+..|.+      +++|+.|++++|. +...    .+..+..+++|++|++++ |+++ .+|
T Consensus       205 ~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~L~~n~-l~~~----~~~~~~~l~~L~~L~L~~-N~l~-~~~  271 (440)
T 3zyj_A          205 PLIKLDELDLSGNHLSAIRPGSFQG------LMHLQKLWMIQSQ-IQVI----ERNAFDNLQSLVEINLAH-NNLT-LLP  271 (440)
T ss_dssp             TCSSCCEEECTTSCCCEECTTTTTT------CTTCCEEECTTCC-CCEE----CTTSSTTCTTCCEEECTT-SCCC-CCC
T ss_pred             CCcccCEEECCCCccCccChhhhcc------CccCCEEECCCCc-eeEE----ChhhhcCCCCCCEEECCC-CCCC-ccC
Confidence            5555555555555433322222222      5555555555553 2221    234566778888888888 6777 555


Q ss_pred             CCCCCccEEEEeccCCCCccceEEeccCCc
Q 002284          398 THLTLLDILVVQNFTSLPALCKLRIDRCKK  427 (943)
Q Consensus       398 ~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~  427 (943)
                      ...          +..+++|+.|++++|+.
T Consensus       272 ~~~----------~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          272 HDL----------FTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             TTT----------TSSCTTCCEEECCSSCE
T ss_pred             hhH----------hccccCCCEEEcCCCCc
Confidence            443          55677777787777763

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.81  E-value=1e-19  Score=193.48  Aligned_cols=88  Identities=18%  Similarity=0.180  Sum_probs=52.9

Q ss_pred             ccchhhhccCcccEEEecCccccccCcc-ccCCCCCceeecCCCccccc---chhhhhccccceeecCCCcccccccHHH
Q 002284           80 SILPRLLKLQRLRVFSLRGYLISEVPDS-IGDLSYLRYLNLSGTQIRTL---PESVNKLYNLHTLLLEGCRELKKKCADM  155 (943)
Q Consensus        80 ~~~~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~Ls~n~i~~l---p~~i~~L~~L~~L~L~~n~~~~~~p~~~  155 (943)
                      .+|.++.  ++|++|++++|.++.+|.. |.++++|++|+|++|.++.+   |..+..+++|++|++++|. +..+|..+
T Consensus        21 ~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~   97 (306)
T 2z66_A           21 SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNF   97 (306)
T ss_dssp             SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEE
T ss_pred             cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhc
Confidence            4444433  4566666666666666543 46666666666666666544   4555566666666666664 34455556


Q ss_pred             hccccCceEEcCCCC
Q 002284          156 GNLIKLHHLNNSNTD  170 (943)
Q Consensus       156 ~~L~~L~~L~l~~n~  170 (943)
                      ..+++|++|++++|.
T Consensus        98 ~~l~~L~~L~l~~n~  112 (306)
T 2z66_A           98 LGLEQLEHLDFQHSN  112 (306)
T ss_dssp             ETCTTCCEEECTTSE
T ss_pred             CCCCCCCEEECCCCc
Confidence            666666666666665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.81  E-value=1.5e-20  Score=200.34  Aligned_cols=150  Identities=12%  Similarity=0.073  Sum_probs=88.6

Q ss_pred             cccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccc-cCCCCccEEeccCCCCCcccCcCCccccccceeee
Q 002284          679 ALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGL-HKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVI  757 (943)
Q Consensus       679 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l  757 (943)
                      +|++|++++|......+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|. ++.+|... .+++|++|++
T Consensus       121 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-~l~~L~~L~L  198 (317)
T 3o53_A          121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQV-VFAKLKTLDL  198 (317)
T ss_dssp             SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCC-CCTTCCEEEC
T ss_pred             CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccccc-ccccCCEEEC
Confidence            45555555554444334455566666666676666666555544 356777777777773 44444322 3567777777


Q ss_pred             ccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceEEecCCcchhccccccCCCCCCCccEEEecC
Q 002284          758 YGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISG  833 (943)
Q Consensus       758 ~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~  833 (943)
                      ++|.. ..+|..+..+++|++|++++|. ++.+|.....+++|+.|++++|+......+ ..+..+++|+.|++++
T Consensus       199 s~N~l-~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~-~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          199 SSNKL-AFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLR-DFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             CSSCC-CEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCBHHHHH-HHHHTCHHHHHHHHHH
T ss_pred             CCCcC-CcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCccCcCHH-HHHhccccceEEECCC
Confidence            77653 3455556667777777777764 445666555566777777777766522211 1345566666666665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.81  E-value=2.2e-21  Score=227.83  Aligned_cols=154  Identities=11%  Similarity=-0.011  Sum_probs=82.2

Q ss_pred             ccccEEEeecCCCchhhHhhh-cccccccEEEee-----ccCCccccc------ccccCCCCccEEeccCCCCCcccCcC
Q 002284          678 QALKFLSIWHCSKLESIVERL-DNKISLEVIEIV-----SCENLKMLP------HGLHKLWHLQEIDIQDCENLVSFPEG  745 (943)
Q Consensus       678 ~~L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~l~-----~~~~~~~~p------~~~~~l~~L~~L~l~~~~~l~~~p~~  745 (943)
                      ++|+.|.+..+.........+ ..+++|+.|+++     +|..++..|      ..+..+++|++|+++++ .....+..
T Consensus       372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~-l~~~~~~~  450 (594)
T 2p1m_B          372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEY  450 (594)
T ss_dssp             TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHH
T ss_pred             hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCc-ccHHHHHH
Confidence            356666554444333333333 346677777777     334444222      22456677777777662 22222222


Q ss_pred             Ccc-ccccceeeeccccCCccCCCcC-CCCCCCCceeecCCCCCccccC-CCCCCCCcceEEecCCcchhccccccCCCC
Q 002284          746 GLL-SAKLKRLVIYGCKKLEALPEGM-HNLSSLQYLTIGGVPSLLCFTE-DGLFPTNLHSLEIDGMKIWKSLMQLGGFHR  822 (943)
Q Consensus       746 ~~~-l~~L~~L~l~~~~~l~~~p~~~-~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  822 (943)
                      +.. +++|+.|++++|...+..+..+ ..+++|++|++++|+....... ....+++|++|++++|+....... .....
T Consensus       451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~~  529 (594)
T 2p1m_B          451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACK-LLGQK  529 (594)
T ss_dssp             HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHH-HHHHH
T ss_pred             HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHH-HHHHh
Confidence            222 5677777777776543333333 4577788888887775221111 122357788888888876332221 11245


Q ss_pred             CCCccEEEecC
Q 002284          823 YTSLRRLAISG  833 (943)
Q Consensus       823 l~~L~~L~l~~  833 (943)
                      +|+|+...+..
T Consensus       530 lp~l~i~~~~~  540 (594)
T 2p1m_B          530 MPKLNVEVIDE  540 (594)
T ss_dssp             CTTEEEEEECS
T ss_pred             CCCCEEEEecC
Confidence            67776666654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.81  E-value=6.3e-19  Score=191.39  Aligned_cols=149  Identities=20%  Similarity=0.141  Sum_probs=88.8

Q ss_pred             hhccccccccCCCccccCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceece
Q 002284          441 YKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEH  520 (943)
Q Consensus       441 ~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~  520 (943)
                      ..+.+++.++..|.. ..++|++|+++     .+.+..++...+..+++|+.|++++|. ++.+....   |..+++|++
T Consensus        35 ~c~~~~~~l~~iP~~-~~~~L~~L~l~-----~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~  104 (353)
T 2z80_A           35 ICKGSSGSLNSIPSG-LTEAVKSLDLS-----NNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDS---FSSLGSLEH  104 (353)
T ss_dssp             EEECCSTTCSSCCTT-CCTTCCEEECT-----TSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTT---TTTCTTCCE
T ss_pred             EeeCCCCCccccccc-ccccCcEEECC-----CCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhh---cCCCCCCCE
Confidence            356666777666542 23567777777     334455555566777777777777774 55554433   667777777


Q ss_pred             EEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCC---CCCCCCccEEEEecCCCCCcCccccccCCCCCccEEEee
Q 002284          521 LELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPE---AVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIR  597 (943)
Q Consensus       521 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~  597 (943)
                      |++++|.+.+..+..+..+++|++|++++|+ ++.++.   ...+++|++|++++|..++.++... +.++++|++|+++
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~l~  182 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD-FAGLTFLEELEID  182 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEE
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHH-ccCCCCCCEEECC
Confidence            7777776554444446777777777777775 334444   1225666666666664444443221 3356666666666


Q ss_pred             cCCC
Q 002284          598 HCHL  601 (943)
Q Consensus       598 ~n~~  601 (943)
                      +|.+
T Consensus       183 ~n~l  186 (353)
T 2z80_A          183 ASDL  186 (353)
T ss_dssp             ETTC
T ss_pred             CCCc
Confidence            6654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.80  E-value=1.9e-20  Score=199.69  Aligned_cols=254  Identities=13%  Similarity=0.063  Sum_probs=142.2

Q ss_pred             ccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCccc
Q 002284          477 WQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSF  556 (943)
Q Consensus       477 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~  556 (943)
                      .......+..+++|++|++++|. ++.++...   +..+++|++|++++|.+.+..+  +..+++|++|++++|. ++.+
T Consensus        23 ~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~-l~~l   95 (317)
T 3o53_A           23 KQALASLRQSAWNVKELDLSGNP-LSQISAAD---LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQEL   95 (317)
T ss_dssp             HHHHHHHHTTGGGCSEEECTTSC-CCCCCHHH---HTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE-EEEE
T ss_pred             hhhHHHHhccCCCCCEEECcCCc-cCcCCHHH---hhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc-cccc
Confidence            33344444555566666666663 44443322   5666666666666665543333  5566666666666664 2222


Q ss_pred             CCCCCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCc-CCCCCCceEEeccCcCccccccccCcc
Q 002284          557 PEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGV-QLPPSLKQLEIYNCDNLRTLTAEEGIH  635 (943)
Q Consensus       557 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~~~~L~~l~~~~~~~  635 (943)
                      +.   .++|++|++++|... .++..    .+++|++|++++|.+....+.. ...                        
T Consensus        96 ~~---~~~L~~L~l~~n~l~-~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l------------------------  143 (317)
T 3o53_A           96 LV---GPSIETLHAANNNIS-RVSCS----RGQGKKNIYLANNKITMLRDLDEGCR------------------------  143 (317)
T ss_dssp             EE---CTTCCEEECCSSCCS-EEEEC----CCSSCEEEECCSSCCCSGGGBCTGGG------------------------
T ss_pred             cC---CCCcCEEECCCCccC-CcCcc----ccCCCCEEECCCCCCCCccchhhhcc------------------------
Confidence            21   245555555555522 22211    2444555555555432211100 111                        


Q ss_pred             cccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhh-cccccccEEEeeccCC
Q 002284          636 SSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERL-DNKISLEVIEIVSCEN  714 (943)
Q Consensus       636 ~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~l~~~~~  714 (943)
                                                                ++|+.|++++|...+..+..+ ..+++|++|++++|.+
T Consensus       144 ------------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  181 (317)
T 3o53_A          144 ------------------------------------------SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (317)
T ss_dssp             ------------------------------------------SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             ------------------------------------------CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence                                                      345556666554444334333 3567777777777765


Q ss_pred             cccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCC-ccccCC
Q 002284          715 LKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSL-LCFTED  793 (943)
Q Consensus       715 ~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l-~~~~~~  793 (943)
                      .+. |. ...+++|++|++++| .++.+|..+..+++|+.|++++|. +..+|..+..+++|++|++++|+.. ..++..
T Consensus       182 ~~~-~~-~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~  257 (317)
T 3o53_A          182 YDV-KG-QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF  257 (317)
T ss_dssp             CEE-EC-CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCBHHHHHHH
T ss_pred             ccc-cc-ccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCccCcCHHHH
Confidence            544 32 234777888888777 455566666677778888887776 4456777777778888888877765 344444


Q ss_pred             CCCCCCcceEEecCCcchhccc
Q 002284          794 GLFPTNLHSLEIDGMKIWKSLM  815 (943)
Q Consensus       794 ~~~~~~L~~L~l~~c~~l~~~~  815 (943)
                      ...+++|+.|++++|+.+....
T Consensus       258 ~~~~~~L~~l~l~~~~~l~~~~  279 (317)
T 3o53_A          258 FSKNQRVQTVAKQTVKKLTGQN  279 (317)
T ss_dssp             HHTCHHHHHHHHHHHHHHHSSS
T ss_pred             HhccccceEEECCCchhccCCc
Confidence            4445777777777776665543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.79  E-value=8.2e-18  Score=193.33  Aligned_cols=255  Identities=24%  Similarity=0.298  Sum_probs=160.5

Q ss_pred             cccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCCCCCccE
Q 002284          488 ATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRV  567 (943)
Q Consensus       488 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~  567 (943)
                      .+++.|++++|. ++.++..    +.  ++|++|++++|.+ ..+|.   .+++|++|++++|. ++.+|.  .+++|++
T Consensus        40 ~~l~~L~ls~n~-L~~lp~~----l~--~~L~~L~L~~N~l-~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~  105 (622)
T 3g06_A           40 NGNAVLNVGESG-LTTLPDC----LP--AHITTLVIPDNNL-TSLPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLLE  105 (622)
T ss_dssp             HCCCEEECCSSC-CSCCCSC----CC--TTCSEEEECSCCC-SCCCC---CCTTCCEEEECSCC-CSCCCC--CCTTCCE
T ss_pred             CCCcEEEecCCC-cCccChh----hC--CCCcEEEecCCCC-CCCCC---cCCCCCEEEcCCCc-CCcCCC--CCCCCCE
Confidence            346777777664 5555543    22  5677777777744 34554   45677777777775 445554  4566777


Q ss_pred             EEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCcCCCCCCceEEeccCcCccccccccCcccccccCCcccee
Q 002284          568 ISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECL  647 (943)
Q Consensus       568 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L  647 (943)
                      |++++|. +..+|.     .+++|++|++++|.+. .+|.  .+++|+.|++++| .++.++                  
T Consensus       106 L~Ls~N~-l~~l~~-----~l~~L~~L~L~~N~l~-~lp~--~l~~L~~L~Ls~N-~l~~l~------------------  157 (622)
T 3g06_A          106 LSIFSNP-LTHLPA-----LPSGLCKLWIFGNQLT-SLPV--LPPGLQELSVSDN-QLASLP------------------  157 (622)
T ss_dssp             EEECSCC-CCCCCC-----CCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSS-CCSCCC------------------
T ss_pred             EECcCCc-CCCCCC-----CCCCcCEEECCCCCCC-cCCC--CCCCCCEEECcCC-cCCCcC------------------
Confidence            7776666 333443     2566677777666533 2332  2355666666665 333322                  


Q ss_pred             eeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCC
Q 002284          648 EIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWH  727 (943)
Q Consensus       648 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~  727 (943)
                                                 ..+++|+.|++++|. ++.+|   ..+++|+.|++++|.+.+ +|.   .+++
T Consensus       158 ---------------------------~~~~~L~~L~L~~N~-l~~l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~  202 (622)
T 3g06_A          158 ---------------------------ALPSELCKLWAYNNQ-LTSLP---MLPSGLQELSVSDNQLAS-LPT---LPSE  202 (622)
T ss_dssp             ---------------------------CCCTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSC-CCC---CCTT
T ss_pred             ---------------------------CccCCCCEEECCCCC-CCCCc---ccCCCCcEEECCCCCCCC-CCC---ccch
Confidence                                       123567777777754 33344   456778888888877654 443   2468


Q ss_pred             ccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceEEecC
Q 002284          728 LQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDG  807 (943)
Q Consensus       728 L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~  807 (943)
                      |+.|++++| .+..+|..   +++|+.|++++|. +..+|   ..+++|++|++++|. +..+|.   .+++|+.|++++
T Consensus       203 L~~L~L~~N-~l~~l~~~---~~~L~~L~Ls~N~-L~~lp---~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~  270 (622)
T 3g06_A          203 LYKLWAYNN-RLTSLPAL---PSGLKELIVSGNR-LTSLP---VLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYR  270 (622)
T ss_dssp             CCEEECCSS-CCSSCCCC---CTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCS
T ss_pred             hhEEECcCC-cccccCCC---CCCCCEEEccCCc-cCcCC---CCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCC
Confidence            888888887 45566642   4678888888876 44566   456788888888874 566766   367888888888


Q ss_pred             CcchhccccccCCCCCCCccEEEecCC
Q 002284          808 MKIWKSLMQLGGFHRYTSLRRLAISGC  834 (943)
Q Consensus       808 c~~l~~~~~~~~~~~l~~L~~L~l~~c  834 (943)
                      |... .++.  .+..+++|+.|+++++
T Consensus       271 N~L~-~lp~--~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          271 NQLT-RLPE--SLIHLSSETTVNLEGN  294 (622)
T ss_dssp             SCCC-SCCG--GGGGSCTTCEEECCSC
T ss_pred             CCCC-cCCH--HHhhccccCEEEecCC
Confidence            8655 3332  4777888888888883

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.78  E-value=2.3e-18  Score=193.60  Aligned_cols=239  Identities=20%  Similarity=0.212  Sum_probs=146.9

Q ss_pred             ceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcc
Q 002284          275 EQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLE  353 (943)
Q Consensus       275 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~  353 (943)
                      ..++..+.....+|..+    .+++++|+|++|.+.+..+ .|..+++|++|++++|......+..|.+      +++|+
T Consensus        57 ~~v~c~~~~l~~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------l~~L~  126 (452)
T 3zyi_A           57 SKVVCTRRGLSEVPQGI----PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG------LASLN  126 (452)
T ss_dssp             CEEECCSSCCSSCCSCC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT------CTTCC
T ss_pred             cEEEECCCCcCccCCCC----CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccC------cccCC
Confidence            44555555556677644    3678888888888877666 7888888888888888754443333333      78888


Q ss_pred             eeecccccccccccccccCCccccCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEEeccCCceeee--
Q 002284          354 TLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWR--  431 (943)
Q Consensus       354 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~~--  431 (943)
                      +|++++|. +..    ..+..+..+++|++|++++ |+++ .+|...          +..+++|+.|++++|..+...  
T Consensus       127 ~L~L~~n~-l~~----~~~~~~~~l~~L~~L~L~~-N~l~-~~~~~~----------~~~l~~L~~L~l~~~~~l~~i~~  189 (452)
T 3zyi_A          127 TLELFDNW-LTV----IPSGAFEYLSKLRELWLRN-NPIE-SIPSYA----------FNRVPSLMRLDLGELKKLEYISE  189 (452)
T ss_dssp             EEECCSSC-CSB----CCTTTSSSCTTCCEEECCS-CCCC-EECTTT----------TTTCTTCCEEECCCCTTCCEECT
T ss_pred             EEECCCCc-CCc----cChhhhcccCCCCEEECCC-CCcc-eeCHhH----------HhcCCcccEEeCCCCCCccccCh
Confidence            88888874 222    1244567788888888888 6776 555433          567888888888886654422  


Q ss_pred             -ccCcccchhhhccccccccCCCccccCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhh
Q 002284          432 -STTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQW  510 (943)
Q Consensus       432 -~~~~~~~l~~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~  510 (943)
                       .+..+++|++|++++|.+++.+....+++|+.|+++                             +|. ++.+....  
T Consensus       190 ~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls-----------------------------~N~-l~~~~~~~--  237 (452)
T 3zyi_A          190 GAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMS-----------------------------GNH-FPEIRPGS--  237 (452)
T ss_dssp             TTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECT-----------------------------TSC-CSEECGGG--
T ss_pred             hhccCCCCCCEEECCCCcccccccccccccccEEECc-----------------------------CCc-CcccCccc--
Confidence             345566677777777776665554445555555554                             443 33332222  


Q ss_pred             hcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCC--CCCccEEEEecCC
Q 002284          511 QFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVL--PSQLRVISIWDSG  574 (943)
Q Consensus       511 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~--~~~L~~L~l~~~~  574 (943)
                       |..+++|+.|++++|.+.+..+..+..+++|++|+|++|. +..++...+  +++|+.|++++|+
T Consensus       238 -~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          238 -FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             -GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             -ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence             5555555555555555554445555556666666666654 333433222  4556666666555

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.78  E-value=2.2e-18  Score=183.16  Aligned_cols=133  Identities=18%  Similarity=0.117  Sum_probs=75.4

Q ss_pred             cccEEEeecCCCchhhHhhhcccccccEEEeeccCCcc-cccccccCCCCccEEeccCCCCCcccCcCCccccccceeee
Q 002284          679 ALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLK-MLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVI  757 (943)
Q Consensus       679 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l  757 (943)
                      +|++|++++|......+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|...+..|..+..+++|++|++
T Consensus       127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  206 (306)
T 2z66_A          127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  206 (306)
T ss_dssp             TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence            45555555554444444455566666666666666554 45666666666666666666444433445555666666666


Q ss_pred             ccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCC-CCcceEEecCCcch
Q 002284          758 YGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFP-TNLHSLEIDGMKIW  811 (943)
Q Consensus       758 ~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~L~~L~l~~c~~l  811 (943)
                      ++|...+..+..+..+++|++|++++|......+.....+ ++|++|++++|+..
T Consensus       207 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             TTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             CCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            6666444444455666666666666665444444443333 35666666666543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.78  E-value=2.2e-18  Score=193.05  Aligned_cols=240  Identities=19%  Similarity=0.231  Sum_probs=149.9

Q ss_pred             cceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCc
Q 002284          274 LEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCL  352 (943)
Q Consensus       274 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L  352 (943)
                      ...++..+.....+|..+    .++++.|+|++|.+.+..+ .|..+++|++|++++|......+..|.+      +++|
T Consensus        45 ~~~v~c~~~~l~~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~------l~~L  114 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGI----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG------LANL  114 (440)
T ss_dssp             SCEEECCSCCCSSCCSCC----CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTT------CSSC
T ss_pred             CCEEEeCCCCcCcCCCCC----CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccC------CccC
Confidence            345555566667777755    4678999999999877666 7888999999999998744433333433      8889


Q ss_pred             ceeecccccccccccccccCCccccCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEEeccCCceee--
Q 002284          353 ETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVW--  430 (943)
Q Consensus       353 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~--  430 (943)
                      ++|++++|. +...    .+..+..+++|++|++++ |+++ .+|...          +..+++|++|++++|..+..  
T Consensus       115 ~~L~L~~n~-l~~~----~~~~~~~l~~L~~L~L~~-N~i~-~~~~~~----------~~~l~~L~~L~l~~~~~l~~i~  177 (440)
T 3zyj_A          115 NTLELFDNR-LTTI----PNGAFVYLSKLKELWLRN-NPIE-SIPSYA----------FNRIPSLRRLDLGELKRLSYIS  177 (440)
T ss_dssp             CEEECCSSC-CSSC----CTTTSCSCSSCCEEECCS-CCCC-EECTTT----------TTTCTTCCEEECCCCTTCCEEC
T ss_pred             CEEECCCCc-CCee----CHhHhhccccCceeeCCC-Cccc-ccCHHH----------hhhCcccCEeCCCCCCCcceeC
Confidence            999998874 3322    244577889999999998 6776 555433          56788888888888665432  


Q ss_pred             -eccCcccchhhhccccccccCCCccccCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhh
Q 002284          431 -RSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQ  509 (943)
Q Consensus       431 -~~~~~~~~l~~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~  509 (943)
                       ..+..+++|++|++++|.++..+....+++|+.|+++                             +|. ++.+.... 
T Consensus       178 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls-----------------------------~N~-l~~~~~~~-  226 (440)
T 3zyj_A          178 EGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLS-----------------------------GNH-LSAIRPGS-  226 (440)
T ss_dssp             TTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECT-----------------------------TSC-CCEECTTT-
T ss_pred             cchhhcccccCeecCCCCcCccccccCCCcccCEEECC-----------------------------CCc-cCccChhh-
Confidence             2345566777777777777666554455555555554                             442 33332222 


Q ss_pred             hhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCC--CCCccEEEEecCC
Q 002284          510 WQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVL--PSQLRVISIWDSG  574 (943)
Q Consensus       510 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~--~~~L~~L~l~~~~  574 (943)
                        |..+++|+.|++++|.+.+..+..|..+++|++|+|++|. ++.++...+  +++|+.|++++|+
T Consensus       227 --~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          227 --FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             --TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             --hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence              4555555555555555444444455555555555555554 333333222  4555555555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.77  E-value=8.2e-19  Score=184.21  Aligned_cols=88  Identities=15%  Similarity=0.153  Sum_probs=42.3

Q ss_pred             hcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCC
Q 002284          698 LDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQ  777 (943)
Q Consensus       698 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~  777 (943)
                      +..+++|++|++++|.+.+..+..+..+++|++|++++|...+..|..+..+++|+.|++++|...+..+..+..+++|+
T Consensus       149 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  228 (285)
T 1ozn_A          149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence            34444444444444444433333445555555555555543333344444455555555555543332223345555555


Q ss_pred             ceeecCCC
Q 002284          778 YLTIGGVP  785 (943)
Q Consensus       778 ~L~l~~~~  785 (943)
                      +|++++|+
T Consensus       229 ~L~l~~N~  236 (285)
T 1ozn_A          229 YLRLNDNP  236 (285)
T ss_dssp             EEECCSSC
T ss_pred             EEeccCCC
Confidence            55555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.77  E-value=8.5e-19  Score=184.11  Aligned_cols=219  Identities=18%  Similarity=0.168  Sum_probs=115.4

Q ss_pred             eEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcce
Q 002284          276 QFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLET  354 (943)
Q Consensus       276 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~  354 (943)
                      .++.++.....+|..+    .++|++|++++|.+.+..+ .++.+++|++|++++|......+..+.+      +++|++
T Consensus        15 ~~~c~~~~l~~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~   84 (285)
T 1ozn_A           15 TTSCPQQGLQAVPVGI----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG------LALLEQ   84 (285)
T ss_dssp             EEECCSSCCSSCCTTC----CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT------CTTCCE
T ss_pred             EEEcCcCCcccCCcCC----CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC------ccCCCE
Confidence            3444455555666533    4678888888888876665 6788888888888888643332333322      667777


Q ss_pred             eecccccccccccccccCCccccCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEEeccCCceeeeccC
Q 002284          355 LHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTT  434 (943)
Q Consensus       355 L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~~~~~  434 (943)
                      |+++++..+...    .+..+..+++|++|++++ +++++..|..           +..+++|++|++++|.        
T Consensus        85 L~l~~n~~l~~~----~~~~~~~l~~L~~L~l~~-n~l~~~~~~~-----------~~~l~~L~~L~l~~n~--------  140 (285)
T 1ozn_A           85 LDLSDNAQLRSV----DPATFHGLGRLHTLHLDR-CGLQELGPGL-----------FRGLAALQYLYLQDNA--------  140 (285)
T ss_dssp             EECCSCTTCCCC----CTTTTTTCTTCCEEECTT-SCCCCCCTTT-----------TTTCTTCCEEECCSSC--------
T ss_pred             EeCCCCCCcccc----CHHHhcCCcCCCEEECCC-CcCCEECHhH-----------hhCCcCCCEEECCCCc--------
Confidence            777766433332    134556677777777777 4665332322           3344555555554443        


Q ss_pred             cccchhhhccccccccCCCc--cccCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhc
Q 002284          435 DCESQLYKDISNQMFLGGPL--KLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQF  512 (943)
Q Consensus       435 ~~~~l~~l~ls~n~l~~~~~--~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~  512 (943)
                                    +++.+.  +..+++|+.|+++     .+.+..++...+..+++|+.|++++|. ++.+....   +
T Consensus       141 --------------l~~~~~~~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~  197 (285)
T 1ozn_A          141 --------------LQALPDDTFRDLGNLTHLFLH-----GNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHA---F  197 (285)
T ss_dssp             --------------CCCCCTTTTTTCTTCCEEECC-----SSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT---T
T ss_pred             --------------ccccCHhHhccCCCccEEECC-----CCcccccCHHHhcCccccCEEECCCCc-ccccCHhH---c
Confidence                          332221  2234444444444     122333333344445555555555553 33332221   4


Q ss_pred             CccceeceEEEecCCCcCccchhccCCCCcCeeeccCCC
Q 002284          513 GLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCS  551 (943)
Q Consensus       513 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~  551 (943)
                      ..+++|+.|++++|.+.+..+..+..+++|++|++++|+
T Consensus       198 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence            455555555555554444333445555555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.76  E-value=6.6e-20  Score=215.15  Aligned_cols=379  Identities=14%  Similarity=0.063  Sum_probs=184.4

Q ss_pred             hhcccccCeEEeecCCCcccchhhhhhhcC-ccceeceEEEecCCCcCc--cchhccCCCCcCeeeccCCCCCcc----c
Q 002284          484 LQDIATLKRLKIERCPKLQFLEEEDQWQFG-LSFRLEHLELINCQDLEK--LPKSLLSLSSLTEMRIHNCSSLVS----F  556 (943)
Q Consensus       484 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~-~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~n~~l~~----~  556 (943)
                      ...+++|++|++++|. ++......   +. .+++|++|++++|...+.  ++.....+++|++|++++|.....    +
T Consensus       101 ~~~~~~L~~L~L~~~~-~~~~~~~~---l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l  176 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMV-VTDDCLEL---IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL  176 (594)
T ss_dssp             HHHCTTCCEEEEESCB-CCHHHHHH---HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred             HHhCCCCCeEEeeCcE-EcHHHHHH---HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence            3456777777777774 33222111   32 567777888877754333  444445677788888877762211    1


Q ss_pred             CCC-CCCCCccEEEEecCCCCCcCccc---cccCCCCCccEEEeecCCCcccccCc-CCCCCCceEEeccCcCccccccc
Q 002284          557 PEA-VLPSQLRVISIWDSGALKFLPEA---WMLDNNSSLEILDIRHCHLLTYIAGV-QLPPSLKQLEIYNCDNLRTLTAE  631 (943)
Q Consensus       557 ~~~-~~~~~L~~L~l~~~~~l~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~~~~L~~l~~~  631 (943)
                      +.. ..+++|++|++++|.  ..+...   .....+++|++|++++|...+.++.. ...++|+.|++..+..--.....
T Consensus       177 ~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~  254 (594)
T 2p1m_B          177 SHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY  254 (594)
T ss_dssp             GGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred             HHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhH
Confidence            111 124677777777775  111110   00124677777777777544443322 33456777776655320000000


Q ss_pred             cCcccccccCCcccee-eeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchh-hHhhhcccccccEEEe
Q 002284          632 EGIHSSRRHTSLLECL-EIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLES-IVERLDNKISLEVIEI  709 (943)
Q Consensus       632 ~~~~~~~~~~~~L~~L-~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~-~~~~~~~l~~L~~L~l  709 (943)
                      .+....+..+++|+.+ .+.+...       ..+....     .. .++|++|++++|..... +...+..+++|++|++
T Consensus       255 ~~l~~~l~~~~~L~~Ls~~~~~~~-------~~l~~~~-----~~-~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l  321 (594)
T 2p1m_B          255 SGLSVALSGCKELRCLSGFWDAVP-------AYLPAVY-----SV-CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV  321 (594)
T ss_dssp             HHHHHHHHTCTTCCEEECCBTCCG-------GGGGGGH-----HH-HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred             HHHHHHHhcCCCcccccCCcccch-------hhHHHHH-----Hh-hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeC
Confidence            0111122344444444 1211110       0000000     01 14677777777763222 2333556777777777


Q ss_pred             eccCCcccccccccCCCCccEEeccCC--------CCCccc-CcCC-ccccccceeeeccccCCccCCCcC-CCCCCCCc
Q 002284          710 VSCENLKMLPHGLHKLWHLQEIDIQDC--------ENLVSF-PEGG-LLSAKLKRLVIYGCKKLEALPEGM-HNLSSLQY  778 (943)
Q Consensus       710 ~~~~~~~~~p~~~~~l~~L~~L~l~~~--------~~l~~~-p~~~-~~l~~L~~L~l~~~~~l~~~p~~~-~~l~~L~~  778 (943)
                      ++|-....++.....+++|++|++++|        ..++.. ...+ ..+++|++|.+..+......+..+ ..+++|++
T Consensus       322 ~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~  401 (594)
T 2p1m_B          322 LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR  401 (594)
T ss_dssp             EGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCE
T ss_pred             cCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcce
Confidence            776211122222334677777777432        222111 0011 125677777665554433322333 24677777


Q ss_pred             eeec-----CCCCCccccCC------CCCCCCcceEEecCCcchhccccccCCCCCCCccEEEecCCCCcCcccCccccc
Q 002284          779 LTIG-----GVPSLLCFTED------GLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIR  847 (943)
Q Consensus       779 L~l~-----~~~~l~~~~~~------~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~  847 (943)
                      |+++     +|..++..|..      ...+++|++|++++  .+...........+++|++|++++|.     +.+.+..
T Consensus       402 L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-----i~~~~~~  474 (594)
T 2p1m_B          402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-----DSDLGMH  474 (594)
T ss_dssp             EEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-----SSHHHHH
T ss_pred             eEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-----CcHHHHH
Confidence            7777     45555533321      11246777777765  22222111112236777777777752     2222211


Q ss_pred             ccCCCCCCccEEEeecCCCCcccc---cccCCCCCCeEeecCCCC
Q 002284          848 LGTTLPACLTQLEIFNFPNLERLS---SSICDQNLTSLKLTNCPK  889 (943)
Q Consensus       848 ~~~~~~~~L~~L~l~~~~~l~~l~---~~~~~~~L~~L~l~~C~~  889 (943)
                      .....+++|++|++++|+- +...   ....+++|+.|++++|+.
T Consensus       475 ~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          475 HVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            1111356777777777764 3211   111367777788877764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.76  E-value=3.7e-19  Score=189.19  Aligned_cols=84  Identities=19%  Similarity=0.256  Sum_probs=38.2

Q ss_pred             ccCcccEEEecCcccc-ccCccc--cCCCCCceeecCCCcccccchhhhhc-----cccceeecCCCcccccccHHHhcc
Q 002284           87 KLQRLRVFSLRGYLIS-EVPDSI--GDLSYLRYLNLSGTQIRTLPESVNKL-----YNLHTLLLEGCRELKKKCADMGNL  158 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~-~lp~~~--~~l~~L~~L~Ls~n~i~~lp~~i~~L-----~~L~~L~L~~n~~~~~~p~~~~~L  158 (943)
                      ++++|++|++++|.++ .+|..+  +.+++|++|+|++|+++.+|..++.+     ++|++|++++|.+.+..|..|+++
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            3444444444444443 234433  44444444444444444444444444     444444444444333333444444


Q ss_pred             ccCceEEcCCCC
Q 002284          159 IKLHHLNNSNTD  170 (943)
Q Consensus       159 ~~L~~L~l~~n~  170 (943)
                      ++|++|++++|.
T Consensus       173 ~~L~~L~Ls~N~  184 (312)
T 1wwl_A          173 PALSTLDLSDNP  184 (312)
T ss_dssp             SSCCEEECCSCT
T ss_pred             CCCCEEECCCCC
Confidence            444444444444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=1.8e-18  Score=195.22  Aligned_cols=239  Identities=13%  Similarity=0.102  Sum_probs=149.4

Q ss_pred             CccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCCCCCccEEEEecCCCCCcCccccccCCCCCcc
Q 002284          513 GLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLE  592 (943)
Q Consensus       513 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~  592 (943)
                      ..+++|+.|++++|.+.+..|..+..+++|++|+|++|......+ ...+++|++|++++|. +..++.      .++|+
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~------~~~L~  102 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV------GPSIE  102 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE------CTTCC
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC------CCCcC
Confidence            345578888888887776667778888888888888886432222 3334445555554443 222221      24444


Q ss_pred             EEEeecCCCcccccCcCCCCCCceEEeccCcCccccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhh
Q 002284          593 ILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLV  672 (943)
Q Consensus       593 ~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~  672 (943)
                      +|++++|.+.+                        ++.                                          
T Consensus       103 ~L~L~~N~l~~------------------------~~~------------------------------------------  116 (487)
T 3oja_A          103 TLHAANNNISR------------------------VSC------------------------------------------  116 (487)
T ss_dssp             EEECCSSCCCC------------------------EEE------------------------------------------
T ss_pred             EEECcCCcCCC------------------------CCc------------------------------------------
Confidence            44444443222                        110                                          


Q ss_pred             cCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCccccccccc-CCCCccEEeccCCCCCcccCcCCccccc
Q 002284          673 VGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLH-KLWHLQEIDIQDCENLVSFPEGGLLSAK  751 (943)
Q Consensus       673 ~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~l~~~~~l~~~p~~~~~l~~  751 (943)
                       ..+ ++|+.|++++|...+..+..+..+++|+.|++++|.+.+..|..+. .+++|++|++++|. ++.+|. ...+++
T Consensus       117 -~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~-~~~l~~  192 (487)
T 3oja_A          117 -SRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-QVVFAK  192 (487)
T ss_dssp             -CCC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTT
T ss_pred             -ccc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc-cccCCC
Confidence             011 3566666666665555555667777888888888877777776665 67888888888884 444443 234678


Q ss_pred             cceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceEEecCCcchhccccccCCCCCCCccEEEe
Q 002284          752 LKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAI  831 (943)
Q Consensus       752 L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l  831 (943)
                      |+.|++++|... .+|..+..+++|+.|++++|. +..+|.....+++|+.|++++|+......+ ..+..++.|+.+++
T Consensus       193 L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~-~~~~~l~~L~~l~~  269 (487)
T 3oja_A          193 LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLR-DFFSKNQRVQTVAK  269 (487)
T ss_dssp             CCEEECCSSCCC-EECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHH-HHHTTCHHHHHHHH
T ss_pred             CCEEECCCCCCC-CCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchH-HHHHhCCCCcEEec
Confidence            888888887744 455567778888888888876 445777666667888888888876622221 13556677777766


Q ss_pred             c
Q 002284          832 S  832 (943)
Q Consensus       832 ~  832 (943)
                      +
T Consensus       270 ~  270 (487)
T 3oja_A          270 Q  270 (487)
T ss_dssp             H
T ss_pred             c
Confidence            5

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.75  E-value=6.9e-19  Score=187.09  Aligned_cols=83  Identities=16%  Similarity=0.187  Sum_probs=37.6

Q ss_pred             hhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCc-Cccchhcc-------CCCCcCeeeccCCCCCcc
Q 002284          484 LQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDL-EKLPKSLL-------SLSSLTEMRIHNCSSLVS  555 (943)
Q Consensus       484 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~L~~n~~l~~  555 (943)
                      +...++|+.|++++|..  .++..    +.  ..|+.|++++|.+. ..+|..+.       .+++|++|++++|...+.
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~----~~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  110 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQ----FT--DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT  110 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHH----HH--HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC
T ss_pred             EccCCCceeEeeccccc--ccHHH----HH--HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch
Confidence            34455566666665543  33332    11  11555555555442 23333332       455555555555544333


Q ss_pred             cCCCC---CCCCccEEEEecCC
Q 002284          556 FPEAV---LPSQLRVISIWDSG  574 (943)
Q Consensus       556 ~~~~~---~~~~L~~L~l~~~~  574 (943)
                      +|...   .+++|++|++++|.
T Consensus       111 ~~~~~~~~~l~~L~~L~Ls~N~  132 (312)
T 1wwl_A          111 APPPLLEATGPDLNILNLRNVS  132 (312)
T ss_dssp             CCCCSSSCCSCCCSEEEEESCB
T ss_pred             hHHHHHHhcCCCccEEEccCCC
Confidence            43321   23444444444444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.73  E-value=8.8e-18  Score=175.40  Aligned_cols=203  Identities=18%  Similarity=0.113  Sum_probs=120.5

Q ss_pred             CcccEEEecCccccccCc-cccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284           89 QRLRVFSLRGYLISEVPD-SIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN  166 (943)
Q Consensus        89 ~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l  166 (943)
                      +.|++|++++|.++.++. .|.++++|++|++++|.++.++ ..|+++++|++|++++|.+.+..|..|.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            356666666666666643 5666666666666666666664 35666666666666666544444455666666666666


Q ss_pred             CCCCCCccccc-cccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEE
Q 002284          167 SNTDSLEEMPL-GIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLE  245 (943)
Q Consensus       167 ~~n~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~  245 (943)
                      ++|. +..++. .++.+++|++|+...+                        .+..     ..++..+..+++|+.|+++
T Consensus       108 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n------------------------~l~~-----~~l~~~~~~l~~L~~L~Ls  157 (276)
T 2z62_A          108 VETN-LASLENFPIGHLKTLKELNVAHN------------------------LIQS-----FKLPEYFSNLTNLEHLDLS  157 (276)
T ss_dssp             TTSC-CCCSTTCCCTTCTTCCEEECCSS------------------------CCCC-----CCCCGGGGGCTTCCEEECC
T ss_pred             CCCC-ccccCchhcccCCCCCEEECcCC------------------------ccce-----ecCchhhccCCCCCEEECC
Confidence            6666 333333 4556666655522111                        0000     0012224555667777777


Q ss_pred             eecCCCCCCchhhhhHHhhhccCCCCCCcc-eEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCC
Q 002284          246 WTRSTNGLSSREAQTEKGVLDMLKPHRSLE-QFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLK  323 (943)
Q Consensus       246 ~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~  323 (943)
                      +|.++....        ..+..+..++.+. .|+++++....+|.....  ..+|++|++++|.+.+..+ .++.+++|+
T Consensus       158 ~N~l~~~~~--------~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  227 (276)
T 2z62_A          158 SNKIQSIYC--------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLKELALDTNQLKSVPDGIFDRLTSLQ  227 (276)
T ss_dssp             SSCCCEECG--------GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC--SCCEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred             CCCCCcCCH--------HHhhhhhhccccceeeecCCCcccccCccccC--CCcccEEECCCCceeecCHhHhccccccc
Confidence            666643221        1112222233333 677777777766665543  4589999999999877666 578899999


Q ss_pred             eeEEecCc
Q 002284          324 HLEVRGMS  331 (943)
Q Consensus       324 ~L~L~~~~  331 (943)
                      +|++++|+
T Consensus       228 ~L~l~~N~  235 (276)
T 2z62_A          228 KIWLHTNP  235 (276)
T ss_dssp             EEECCSSC
T ss_pred             EEEccCCc
Confidence            99999987

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.73  E-value=1.6e-18  Score=195.64  Aligned_cols=237  Identities=12%  Similarity=0.076  Sum_probs=159.9

Q ss_pred             hcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCCCCC
Q 002284          485 QDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQ  564 (943)
Q Consensus       485 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~~  564 (943)
                      ..+++|+.|++++|. ++.++...   |..+++|++|++++|.+.+..|  +..+++|++|++++|. ++.++.   .++
T Consensus        31 ~~~~~L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~---~~~  100 (487)
T 3oja_A           31 QSAWNVKELDLSGNP-LSQISAAD---LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV---GPS  100 (487)
T ss_dssp             TTGGGCCEEECCSSC-CCCCCGGG---GTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEEE---CTT
T ss_pred             ccCCCccEEEeeCCc-CCCCCHHH---HhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCCC---CCC
Confidence            455689999999985 66555444   8899999999999998766555  8899999999999996 444443   388


Q ss_pred             ccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCc-CCCCCCceEEeccCcCccccccccCcccccccCCc
Q 002284          565 LRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGV-QLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSL  643 (943)
Q Consensus       565 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~  643 (943)
                      |++|++++|.... ++..    .+++|++|++++|.+.+..+.. ..+                                
T Consensus       101 L~~L~L~~N~l~~-~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l--------------------------------  143 (487)
T 3oja_A          101 IETLHAANNNISR-VSCS----RGQGKKNIYLANNKITMLRDLDEGCR--------------------------------  143 (487)
T ss_dssp             CCEEECCSSCCCC-EEEC----CCSSCEEEECCSSCCCSGGGBCGGGG--------------------------------
T ss_pred             cCEEECcCCcCCC-CCcc----ccCCCCEEECCCCCCCCCCchhhcCC--------------------------------
Confidence            9999999998544 3332    4688999999998765433211 112                                


Q ss_pred             cceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhc-ccccccEEEeeccCCcccccccc
Q 002284          644 LECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLD-NKISLEVIEIVSCENLKMLPHGL  722 (943)
Q Consensus       644 L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~-~l~~L~~L~l~~~~~~~~~p~~~  722 (943)
                                                        ++|+.|++++|...+..|..+. .+++|++|++++|.+.+..+  .
T Consensus       144 ----------------------------------~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~  187 (487)
T 3oja_A          144 ----------------------------------SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--Q  187 (487)
T ss_dssp             ----------------------------------SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--C
T ss_pred             ----------------------------------CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--c
Confidence                                              2455555555554444444443 56777777777776655422  3


Q ss_pred             cCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCC-ccccCCCCCCCCcc
Q 002284          723 HKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSL-LCFTEDGLFPTNLH  801 (943)
Q Consensus       723 ~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~L~  801 (943)
                      ..+++|++|++++|. ++.+|..+..+++|+.|++++|... .+|..+..+++|+.|++++|+.. ..+|.....++.|+
T Consensus       188 ~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~  265 (487)
T 3oja_A          188 VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ  265 (487)
T ss_dssp             CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred             ccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence            357777777777773 4456666667777778888777643 46777777777888888777755 34444333445666


Q ss_pred             eEEec
Q 002284          802 SLEID  806 (943)
Q Consensus       802 ~L~l~  806 (943)
                      .++++
T Consensus       266 ~l~~~  270 (487)
T 3oja_A          266 TVAKQ  270 (487)
T ss_dssp             HHHHH
T ss_pred             EEecc
Confidence            66654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.72  E-value=3.4e-17  Score=170.18  Aligned_cols=100  Identities=27%  Similarity=0.362  Sum_probs=68.6

Q ss_pred             hccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEE
Q 002284           86 LKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLN  165 (943)
Q Consensus        86 ~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~  165 (943)
                      ..+++|+.|++++|.+..++ .+..+++|++|++++|.+..++ .++.+++|++|++++|.+.+..|..|+++++|++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            36777888888888777765 4777888888888888877764 677788888888888765444445577788888888


Q ss_pred             cCCCCCCcccccc-cccccccccc
Q 002284          166 NSNTDSLEEMPLG-IGKLTCLLTL  188 (943)
Q Consensus       166 l~~n~~~~~~p~~-~~~L~~L~~L  188 (943)
                      +++|. +..+|.. ++.+++|++|
T Consensus       116 L~~n~-l~~~~~~~~~~l~~L~~L  138 (272)
T 3rfs_A          116 LVENQ-LQSLPDGVFDKLTNLTYL  138 (272)
T ss_dssp             CTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred             CCCCc-CCccCHHHhccCCCCCEE
Confidence            88877 4444332 3444444433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.72  E-value=7.7e-17  Score=167.34  Aligned_cols=82  Identities=23%  Similarity=0.347  Sum_probs=42.4

Q ss_pred             CcccEEEecCccccccC-ccccCCCCCceeecCCCcccccch-hhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284           89 QRLRVFSLRGYLISEVP-DSIGDLSYLRYLNLSGTQIRTLPE-SVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN  166 (943)
Q Consensus        89 ~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l  166 (943)
                      +.+++|++++|.++.+| ..|.++++|++|+|++|.++.+|. .|.++++|++|++++|.+....+..|.++++|++|++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            34555555555555553 245555555555555555555543 2355555555555555433222233455555555555


Q ss_pred             CCCC
Q 002284          167 SNTD  170 (943)
Q Consensus       167 ~~n~  170 (943)
                      ++|.
T Consensus       117 ~~n~  120 (270)
T 2o6q_A          117 DRNQ  120 (270)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            5554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.71  E-value=5.2e-17  Score=169.52  Aligned_cols=94  Identities=19%  Similarity=0.214  Sum_probs=76.1

Q ss_pred             cEEEecCccccccCccccCCCCCceeecCCCcccccch-hhhhccccceeecCCCcccccccHHHhccccCceEEcCCCC
Q 002284           92 RVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPE-SVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTD  170 (943)
Q Consensus        92 ~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~  170 (943)
                      .+.+..+..+..+|..+.  ++|++|++++|.++.+|. .|+++++|++|++++|.+.+..+..|+++++|++|++++|.
T Consensus        10 ~~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           10 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             TEEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             ceEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            346667777888888775  589999999999999965 89999999999999997555555679999999999999999


Q ss_pred             CCcccc-cccccccccccc
Q 002284          171 SLEEMP-LGIGKLTCLLTL  188 (943)
Q Consensus       171 ~~~~~p-~~~~~L~~L~~L  188 (943)
                       +..++ ..++++++|++|
T Consensus        88 -l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           88 -IQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             -CCEECTTTTTTCTTCCEE
T ss_pred             -cCccChhhhcCCccccEE
Confidence             44444 456666666666

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.71  E-value=1.3e-16  Score=165.70  Aligned_cols=95  Identities=21%  Similarity=0.353  Sum_probs=51.0

Q ss_pred             cccEEEecCccccccCccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccH-HHhccccCceEEcC
Q 002284           90 RLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCA-DMGNLIKLHHLNNS  167 (943)
Q Consensus        90 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~-~~~~L~~L~~L~l~  167 (943)
                      ..++++++++.++.+|..+.  ++|++|+|++|+|+.+| ..|+++++|++|++++|.+ ..+|. .|.++++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEECC
Confidence            34556666666666655443  45666666666666654 3556666666666666543 23333 34556666666666


Q ss_pred             CCCCCcccccc-cccccccccc
Q 002284          168 NTDSLEEMPLG-IGKLTCLLTL  188 (943)
Q Consensus       168 ~n~~~~~~p~~-~~~L~~L~~L  188 (943)
                      +|. +..+|.. ++.+++|++|
T Consensus        94 ~n~-l~~~~~~~~~~l~~L~~L  114 (270)
T 2o6q_A           94 DNK-LQALPIGVFDQLVNLAEL  114 (270)
T ss_dssp             SSC-CCCCCTTTTTTCSSCCEE
T ss_pred             CCc-CCcCCHhHcccccCCCEE
Confidence            665 3444332 3444444444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.70  E-value=1.4e-16  Score=166.72  Aligned_cols=87  Identities=22%  Similarity=0.169  Sum_probs=47.7

Q ss_pred             ccchhhhccCcccEEEecCcccccc-CccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhcc
Q 002284           80 SILPRLLKLQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNL  158 (943)
Q Consensus        80 ~~~~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L  158 (943)
                      .+|.+++  +.+++|+|++|.++.+ |..|..+++|++|+|++|.|+.+|.. +.+++|++|++++|. +..+|..+..+
T Consensus        24 ~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l   99 (290)
T 1p9a_G           24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTL   99 (290)
T ss_dssp             SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTC
T ss_pred             cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCc-CCcCchhhccC
Confidence            4444443  4555566666555554 34555556666666666655555432 455556666665553 34555555555


Q ss_pred             ccCceEEcCCCC
Q 002284          159 IKLHHLNNSNTD  170 (943)
Q Consensus       159 ~~L~~L~l~~n~  170 (943)
                      ++|++|++++|.
T Consensus       100 ~~L~~L~l~~N~  111 (290)
T 1p9a_G          100 PALTVLDVSFNR  111 (290)
T ss_dssp             TTCCEEECCSSC
T ss_pred             CCCCEEECCCCc
Confidence            555556555555

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.69  E-value=2.3e-16  Score=160.59  Aligned_cols=201  Identities=17%  Similarity=0.135  Sum_probs=125.5

Q ss_pred             CcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccc-cccccCCCCccEEeccCCCCCcccCc-CCccccccc
Q 002284          676 LPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKML-PHGLHKLWHLQEIDIQDCENLVSFPE-GGLLSAKLK  753 (943)
Q Consensus       676 lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~l~~~p~-~~~~l~~L~  753 (943)
                      +|+++++|++++|...+..+..+.++++|++|++++|..++.+ +..|.++++|++|++++|..++.+|. .+..+++|+
T Consensus        29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            6678899999887655444446888888888888888744444 45778888888888888335666664 456688888


Q ss_pred             eeeeccccCCccCCCcCCCCCCCC---ceeecCCCCCccccCC-CCCCCCcc-eEEecCCcchhccccccCCCCCCCccE
Q 002284          754 RLVIYGCKKLEALPEGMHNLSSLQ---YLTIGGVPSLLCFTED-GLFPTNLH-SLEIDGMKIWKSLMQLGGFHRYTSLRR  828 (943)
Q Consensus       754 ~L~l~~~~~l~~~p~~~~~l~~L~---~L~l~~~~~l~~~~~~-~~~~~~L~-~L~l~~c~~l~~~~~~~~~~~l~~L~~  828 (943)
                      +|++++|.. ..+|. +..+++|+   +|++++|+.++.++.. +..+++|+ +|++++|... .++. ..+.. ++|++
T Consensus       109 ~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~-~~~~~-~~L~~  183 (239)
T 2xwt_C          109 FLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG-YAFNG-TKLDA  183 (239)
T ss_dssp             EEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT-TTTTT-CEEEE
T ss_pred             EEeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH-hhcCC-CCCCE
Confidence            888888874 44775 77777777   8888888667776654 33456777 7777776544 2222 23333 66777


Q ss_pred             EEecCCCCcCcccCcccccccCCCC-CCccEEEeecCCCCcccccccCCCCCCeEeecCCC
Q 002284          829 LAISGCDEDMVSFPLEDIRLGTTLP-ACLTQLEIFNFPNLERLSSSICDQNLTSLKLTNCP  888 (943)
Q Consensus       829 L~l~~c~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~C~  888 (943)
                      |++++| ..++.++.+..    ..+ ++|++|++++ .+++.+|.. .+++|+.|.+.++.
T Consensus       184 L~L~~n-~~l~~i~~~~~----~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          184 VYLNKN-KYLTVIDKDAF----GGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTW  237 (239)
T ss_dssp             EECTTC-TTCCEECTTTT----TTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC-
T ss_pred             EEcCCC-CCcccCCHHHh----hccccCCcEEECCC-CccccCChh-HhccCceeeccCcc
Confidence            777662 22444433221    123 4555555554 234444443 44555555555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.68  E-value=8e-17  Score=170.40  Aligned_cols=190  Identities=18%  Similarity=0.245  Sum_probs=107.4

Q ss_pred             ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284           87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN  166 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l  166 (943)
                      .+++|++|++++|.+..+| .+..+++|++|++++|.+..+|. ++.+++|++|++++|. +..+| .+..+++|++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred             HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence            5566666666666666665 46666666666666666666655 6666666666666665 33333 4666666666666


Q ss_pred             CCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEe
Q 002284          167 SNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEW  246 (943)
Q Consensus       167 ~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  246 (943)
                      ++|. +..+|. ++.+++|++|+...+                        .+...       .. +..+++|+.|++++
T Consensus       115 ~~n~-l~~~~~-l~~l~~L~~L~l~~n------------------------~l~~~-------~~-l~~l~~L~~L~l~~  160 (308)
T 1h6u_A          115 TSTQ-ITDVTP-LAGLSNLQVLYLDLN------------------------QITNI-------SP-LAGLTNLQYLSIGN  160 (308)
T ss_dssp             TTSC-CCCCGG-GTTCTTCCEEECCSS------------------------CCCCC-------GG-GGGCTTCCEEECCS
T ss_pred             CCCC-CCCchh-hcCCCCCCEEECCCC------------------------ccCcC-------cc-ccCCCCccEEEccC
Confidence            6666 444443 555555554421111                        00000       00 33445666666666


Q ss_pred             ecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCCCCCCCCCCCeeE
Q 002284          247 TRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLE  326 (943)
Q Consensus       247 n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~  326 (943)
                      |.++..             ..+..+++|+.|+++++....++. +  ..+++|++|++++|.+.+.. ++..+++|+.|+
T Consensus       161 n~l~~~-------------~~l~~l~~L~~L~l~~n~l~~~~~-l--~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~  223 (308)
T 1h6u_A          161 AQVSDL-------------TPLANLSKLTTLKADDNKISDISP-L--ASLPNLIEVHLKNNQISDVS-PLANTSNLFIVT  223 (308)
T ss_dssp             SCCCCC-------------GGGTTCTTCCEEECCSSCCCCCGG-G--GGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEE
T ss_pred             CcCCCC-------------hhhcCCCCCCEEECCCCccCcChh-h--cCCCCCCEEEccCCccCccc-cccCCCCCCEEE
Confidence            655311             114445566666666665555554 2  23667777777777765443 466677777777


Q ss_pred             EecCc
Q 002284          327 VRGMS  331 (943)
Q Consensus       327 L~~~~  331 (943)
                      +++|+
T Consensus       224 l~~N~  228 (308)
T 1h6u_A          224 LTNQT  228 (308)
T ss_dssp             EEEEE
T ss_pred             ccCCe
Confidence            77765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.68  E-value=2.8e-16  Score=166.85  Aligned_cols=203  Identities=18%  Similarity=0.165  Sum_probs=132.1

Q ss_pred             CccceeceEEEecCCCcCccchhc--cCCCCcCeeeccCCCCCcccCC-----CCCCCCccEEEEecCCCCCcCcccccc
Q 002284          513 GLSFRLEHLELINCQDLEKLPKSL--LSLSSLTEMRIHNCSSLVSFPE-----AVLPSQLRVISIWDSGALKFLPEAWML  585 (943)
Q Consensus       513 ~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~L~~n~~l~~~~~-----~~~~~~L~~L~l~~~~~l~~~~~~~~~  585 (943)
                      ..+++|++|++++|.+.+..|..+  ..+++|++|++++|......+.     ...+++|++|++++|......+..  +
T Consensus        88 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~--~  165 (310)
T 4glp_A           88 LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQ--V  165 (310)
T ss_dssp             HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTS--C
T ss_pred             cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHH--h
Confidence            345678999999998887788777  7888899999998875543331     113567777777777754444444  3


Q ss_pred             CCCCCccEEEeecCCCccc--ccCcCCCCCCceEEeccCcCccccccccCcccccccCCccceeeeecCCCcccccchhh
Q 002284          586 DNNSSLEILDIRHCHLLTY--IAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNE  663 (943)
Q Consensus       586 ~~l~~L~~L~l~~n~~~~~--~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~  663 (943)
                      +.+++|++|++++|++.+.  ++...                                                      
T Consensus       166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------------  191 (310)
T 4glp_A          166 RAFPALTSLDLSDNPGLGERGLMAAL------------------------------------------------------  191 (310)
T ss_dssp             CCCTTCCEEECCSCTTCHHHHHHTTS------------------------------------------------------
T ss_pred             ccCCCCCEEECCCCCCccchhhhHHH------------------------------------------------------
Confidence            4677777777777765432  11000                                                      


Q ss_pred             HHHHhhhhhcCCCcccccEEEeecCCCchhhHh----hhcccccccEEEeeccCCcccccccccCC---CCccEEeccCC
Q 002284          664 LRAALDYLVVGNLPQALKFLSIWHCSKLESIVE----RLDNKISLEVIEIVSCENLKMLPHGLHKL---WHLQEIDIQDC  736 (943)
Q Consensus       664 ~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~----~~~~l~~L~~L~l~~~~~~~~~p~~~~~l---~~L~~L~l~~~  736 (943)
                              ..+.+ ++|++|++++|.. +.++.    .+..+++|++|++++|.+.+..|..+..+   ++|++|++++|
T Consensus       192 --------~~~~l-~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N  261 (310)
T 4glp_A          192 --------CPHKF-PAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA  261 (310)
T ss_dssp             --------CTTSS-CCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS
T ss_pred             --------hhhcC-CCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC
Confidence                    00111 2455556666543 22222    24677888888888888877777666665   58888888888


Q ss_pred             CCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCC
Q 002284          737 ENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPS  786 (943)
Q Consensus       737 ~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~  786 (943)
                      . ++.+|..+.  ++|++|++++|... .+|. +..+++|++|++++|+.
T Consensus       262 ~-l~~lp~~~~--~~L~~L~Ls~N~l~-~~~~-~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          262 G-LEQVPKGLP--AKLRVLDLSSNRLN-RAPQ-PDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             C-CCSCCSCCC--SCCSCEECCSCCCC-SCCC-TTSCCCCSCEECSSTTT
T ss_pred             C-CCchhhhhc--CCCCEEECCCCcCC-CCch-hhhCCCccEEECcCCCC
Confidence            4 457777654  58888888887744 4443 56777788888877763

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.68  E-value=5.1e-17  Score=168.84  Aligned_cols=224  Identities=17%  Similarity=0.205  Sum_probs=139.8

Q ss_pred             cCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEcC
Q 002284           88 LQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNS  167 (943)
Q Consensus        88 l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~  167 (943)
                      +..+..+++.++.+..+ .....+++|+.|++++|.++.++ .++.+++|++|++++|.+. .+ ..++++++|++|+++
T Consensus        18 ~~~l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH-DI-SALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCC-CC-GGGTTCTTCCEEECT
T ss_pred             HHHHHHHHhcCcccccc-cccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCC-Cc-hhhcCCCCCCEEECC
Confidence            44555666777766554 34678899999999999999885 5899999999999999744 44 479999999999999


Q ss_pred             CCCCCcccccc-ccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEe
Q 002284          168 NTDSLEEMPLG-IGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEW  246 (943)
Q Consensus       168 ~n~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  246 (943)
                      +|. +..+|.. ++.+++|++|+...+                        .+.      ......+..+++|+.|++++
T Consensus        94 ~n~-l~~~~~~~~~~l~~L~~L~L~~n------------------------~l~------~~~~~~~~~l~~L~~L~L~~  142 (272)
T 3rfs_A           94 GNQ-LQSLPNGVFDKLTNLKELVLVEN------------------------QLQ------SLPDGVFDKLTNLTYLNLAH  142 (272)
T ss_dssp             TSC-CCCCCTTTTTTCTTCCEEECTTS------------------------CCC------CCCTTTTTTCTTCCEEECCS
T ss_pred             CCc-cCccChhHhcCCcCCCEEECCCC------------------------cCC------ccCHHHhccCCCCCEEECCC
Confidence            998 5555543 667777666632111                        000      00011134445555555555


Q ss_pred             ecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCee
Q 002284          247 TRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHL  325 (943)
Q Consensus       247 n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L  325 (943)
                      |.+                                   ..+|.... ..+++|++|++++|.+.+..+ .++.+++|++|
T Consensus       143 n~l-----------------------------------~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  186 (272)
T 3rfs_A          143 NQL-----------------------------------QSLPKGVF-DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL  186 (272)
T ss_dssp             SCC-----------------------------------CCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             Ccc-----------------------------------CccCHHHh-ccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence            544                                   33333221 125666777777766665544 45666777777


Q ss_pred             EEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCcccEEeeccCCCccCCCCCCCC
Q 002284          326 EVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLT  401 (943)
Q Consensus       326 ~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~  401 (943)
                      ++++|.... ++...++.     +++|+.|++++|+     +       .+.+++|+.+++.. ++++|.+|..+.
T Consensus       187 ~L~~N~l~~-~~~~~~~~-----l~~L~~L~l~~N~-----~-------~~~~~~l~~l~~~~-n~~~g~ip~~~~  243 (272)
T 3rfs_A          187 RLYQNQLKS-VPDGVFDR-----LTSLQYIWLHDNP-----W-------DCTCPGIRYLSEWI-NKHSGVVRNSAG  243 (272)
T ss_dssp             ECCSSCCSC-CCTTTTTT-----CTTCCEEECCSSC-----B-------CCCTTTTHHHHHHH-HHTGGGBBCTTS
T ss_pred             ECCCCcCCc-cCHHHHhC-----CcCCCEEEccCCC-----c-------cccCcHHHHHHHHH-HhCCCcccCccc
Confidence            777665332 22222221     6666777766664     1       13466677777777 577777776553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.67  E-value=6.6e-16  Score=157.17  Aligned_cols=125  Identities=15%  Similarity=0.190  Sum_probs=69.1

Q ss_pred             cccEEEeecCCCchhhHhhhccccccc---EEEeecc-CCcccccccccCCCCcc-EEeccCCCCCcccCcCCccccccc
Q 002284          679 ALKFLSIWHCSKLESIVERLDNKISLE---VIEIVSC-ENLKMLPHGLHKLWHLQ-EIDIQDCENLVSFPEGGLLSAKLK  753 (943)
Q Consensus       679 ~L~~L~l~~~~~l~~~~~~~~~l~~L~---~L~l~~~-~~~~~~p~~~~~l~~L~-~L~l~~~~~l~~~p~~~~~l~~L~  753 (943)
                      +|++|++++|.. +.+|. +..+++|+   +|++++| .+.+..+..+.++++|+ +|++++|. ++.+|...+..++|+
T Consensus       106 ~L~~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~  182 (239)
T 2xwt_C          106 LLKFLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLD  182 (239)
T ss_dssp             TCCEEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEE
T ss_pred             CCCEEeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCC
Confidence            344445544432 22333 44444444   6666666 33333344566677777 77777763 446665544446677


Q ss_pred             eeeeccccCCccC-CCcCCCC-CCCCceeecCCCCCccccCCCCCCCCcceEEecCCc
Q 002284          754 RLVIYGCKKLEAL-PEGMHNL-SSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMK  809 (943)
Q Consensus       754 ~L~l~~~~~l~~~-p~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~  809 (943)
                      +|++++|..++.+ +..+..+ ++|++|++++|+ ++.+|..  .+++|+.|+++++.
T Consensus       183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             EEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC-
T ss_pred             EEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh--HhccCceeeccCcc
Confidence            7777776433344 3455666 677777777655 4455544  24666666666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.66  E-value=1.5e-15  Score=158.74  Aligned_cols=200  Identities=20%  Similarity=0.209  Sum_probs=115.9

Q ss_pred             ccCCCCcCeeeccCCCCCcccCCCCCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCcCCCCCCc
Q 002284          536 LLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLK  615 (943)
Q Consensus       536 ~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~  615 (943)
                      +..++++++++++++. ++.+|.. .+++++.|++++|......+..  +..+++|++|++++|.+.. ++....+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~-l~~ip~~-~~~~l~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRN-LTALPPD-LPKDTTILHLSENLLYTFSLAT--LMPYTRLTQLNLDRAELTK-LQVDGTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSC-CSSCCSC-CCTTCCEEECTTSCCSEEEGGG--GTTCTTCCEEECTTSCCCE-EECCSCCTTCC
T ss_pred             ccccCCccEEECCCCC-CCcCCCC-CCCCCCEEEcCCCcCCccCHHH--hhcCCCCCEEECCCCccCc-ccCCCCCCcCC
Confidence            3455666666666654 4455432 3456677777777643333333  3478888888888876432 22222333344


Q ss_pred             eEEeccCcCccccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhH
Q 002284          616 QLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIV  695 (943)
Q Consensus       616 ~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~  695 (943)
                      .|                                                                  ++++|. ++.+|
T Consensus        81 ~L------------------------------------------------------------------~Ls~N~-l~~l~   93 (290)
T 1p9a_G           81 TL------------------------------------------------------------------DLSHNQ-LQSLP   93 (290)
T ss_dssp             EE------------------------------------------------------------------ECCSSC-CSSCC
T ss_pred             EE------------------------------------------------------------------ECCCCc-CCcCc
Confidence            44                                                                  444332 22333


Q ss_pred             hhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcC-CccccccceeeeccccCCccCCC-cCCCC
Q 002284          696 ERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEG-GLLSAKLKRLVIYGCKKLEALPE-GMHNL  773 (943)
Q Consensus       696 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~-~~~l~~L~~L~l~~~~~l~~~p~-~~~~l  773 (943)
                      ..+..+++|++|++++|.+.+..|..|.++++|++|++++|. ++.+|.. +..+++|+.|++++|... .+|. .+..+
T Consensus        94 ~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l  171 (290)
T 1p9a_G           94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGL  171 (290)
T ss_dssp             CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTC
T ss_pred             hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCC-ccCHHHhcCc
Confidence            444555666666666666665555666677777777777773 3444443 345667777777776643 4443 44667


Q ss_pred             CCCCceeecCCCCCccccCCCCCCCCcceEEecCCcc
Q 002284          774 SSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKI  810 (943)
Q Consensus       774 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~  810 (943)
                      ++|++|++++|. +..+|.+....++|+.+++++|+.
T Consensus       172 ~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          172 ENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             TTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             CCCCEEECCCCc-CCccChhhcccccCCeEEeCCCCc
Confidence            777777777665 456666666566677777776654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.66  E-value=1.4e-15  Score=164.21  Aligned_cols=102  Identities=17%  Similarity=0.119  Sum_probs=53.2

Q ss_pred             hhccccccccCCCccccCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceece
Q 002284          441 YKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEH  520 (943)
Q Consensus       441 ~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~  520 (943)
                      +++.+++.++..|... .+++++|+++     .+.+..++...|.++++|+.|++++|...+.++...   |.+++++++
T Consensus        13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls-----~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~---f~~L~~l~~   83 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDL-PRNAIELRFV-----LTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV---FSNLPKLHE   83 (350)
T ss_dssp             EEEEESTTCCSCCTTC-CTTCSEEEEE-----SCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS---BCSCTTCCE
T ss_pred             EEEecCCCCCccCcCc-CCCCCEEEcc-----CCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH---hhcchhhhh
Confidence            3455566666655322 3456666666     334445555555666666666666665444444433   555555544


Q ss_pred             -EEEecCCCcCccchhccCCCCcCeeeccCCC
Q 002284          521 -LELINCQDLEKLPKSLLSLSSLTEMRIHNCS  551 (943)
Q Consensus       521 -L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~  551 (943)
                       +.+.+|.+....|.+|..+++|++|++++|.
T Consensus        84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~  115 (350)
T 4ay9_X           84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTG  115 (350)
T ss_dssp             EEEEEETTCCEECTTSBCCCTTCCEEEEEEEC
T ss_pred             hhcccCCcccccCchhhhhccccccccccccc
Confidence             3333343333334455556666666666554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.65  E-value=2.3e-16  Score=167.43  Aligned_cols=205  Identities=17%  Similarity=0.138  Sum_probs=128.0

Q ss_pred             ccCcccEEEecCccccc-cCccc--cCCCCCceeecCCCccccc-c----hhhhhccccceeecCCCcccccccHHHhcc
Q 002284           87 KLQRLRVFSLRGYLISE-VPDSI--GDLSYLRYLNLSGTQIRTL-P----ESVNKLYNLHTLLLEGCRELKKKCADMGNL  158 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~-lp~~~--~~l~~L~~L~Ls~n~i~~l-p----~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L  158 (943)
                      .+++|++|++++|.+.. .|..+  ..+++|++|+|++|.+... |    ..+..+++|++|++++|.+.+..|..|+.+
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            56779999999999875 47777  8899999999999998853 2    345678999999999998766666779999


Q ss_pred             ccCceEEcCCCCCCcc--ccc--cccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccC
Q 002284          159 IKLHHLNNSNTDSLEE--MPL--GIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLD  234 (943)
Q Consensus       159 ~~L~~L~l~~n~~~~~--~p~--~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~  234 (943)
                      ++|++|++++|.+.+.  ++.  .++.+++|++|+...+                        .+...   .......+.
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N------------------------~l~~l---~~~~~~l~~  221 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT------------------------GMETP---TGVCAALAA  221 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS------------------------CCCCH---HHHHHHHHH
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC------------------------CCCch---HHHHHHHHh
Confidence            9999999999984432  322  2466777777732211                        11100   011111134


Q ss_pred             CCCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC
Q 002284          235 GKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP  314 (943)
Q Consensus       235 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~  314 (943)
                      .+++|++|++++|.++...+.        .+..+..+++|+.|++++|....+|.++    .++|++|++++|++.+. |
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~--------~~~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~L~~L~Ls~N~l~~~-~  288 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNP--------SAPRCMWSSALNSLNLSFAGLEQVPKGL----PAKLRVLDLSSNRLNRA-P  288 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCS--------CCSSCCCCTTCCCEECCSSCCCSCCSCC----CSCCSCEECCSCCCCSC-C
T ss_pred             cCCCCCEEECCCCCCCccchh--------hHHhccCcCcCCEEECCCCCCCchhhhh----cCCCCEEECCCCcCCCC-c
Confidence            567777888877777533110        0112222345666666666555555544    24566666666665433 3


Q ss_pred             CCCCCCCCCeeEEecCc
Q 002284          315 SVGQLPSLKHLEVRGMS  331 (943)
Q Consensus       315 ~~~~l~~L~~L~L~~~~  331 (943)
                      .+..+++|+.|++++|+
T Consensus       289 ~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          289 QPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CTTSCCCCSCEECSSTT
T ss_pred             hhhhCCCccEEECcCCC
Confidence            34555556666665554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.64  E-value=1.2e-17  Score=180.40  Aligned_cols=240  Identities=18%  Similarity=0.128  Sum_probs=151.8

Q ss_pred             hhhhcc--CcccEEEecCccccccCccccCCCCCceeecCCCcccc--cchhhhhccccceeecCCCcccccccHHHhcc
Q 002284           83 PRLLKL--QRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRT--LPESVNKLYNLHTLLLEGCRELKKKCADMGNL  158 (943)
Q Consensus        83 ~~~~~l--~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~--lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L  158 (943)
                      ..+..+  +++++|++++|.+...+..+..+++|++|++++|.+..  +|..+..+++|++|++++|......|..++++
T Consensus        62 ~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~  141 (336)
T 2ast_B           62 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN  141 (336)
T ss_dssp             HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC
T ss_pred             HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC
Confidence            334466  89999999999988876667789999999999998874  67788899999999999997666788889999


Q ss_pred             ccCceEEcCCCCCCc--cccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCC
Q 002284          159 IKLHHLNNSNTDSLE--EMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGK  236 (943)
Q Consensus       159 ~~L~~L~l~~n~~~~--~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~  236 (943)
                      ++|++|++++|..++  .+|..++.+++|++|+...+                          ..+  ....+...+..+
T Consensus       142 ~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~--------------------------~~l--~~~~~~~~~~~l  193 (336)
T 2ast_B          142 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC--------------------------FDF--TEKHVQVAVAHV  193 (336)
T ss_dssp             TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC--------------------------TTC--CHHHHHHHHHHS
T ss_pred             CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC--------------------------CCc--ChHHHHHHHHhc
Confidence            999999999983233  24444555555555521110                          000  001122223344


Q ss_pred             C-CCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCC--CCCCcccCCCCcCCeeEEEEeCCC-CCCC
Q 002284          237 K-NLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGG--KKFPTWLGYSLFSNLVTLKFQDCS-MCTS  312 (943)
Q Consensus       237 ~-~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~--~~~p~~~~~~~l~~L~~L~L~~n~-~~~~  312 (943)
                      + +|++|++++|..                                 ..  ..+|..+.  .+++|++|++++|. +.+.
T Consensus       194 ~~~L~~L~l~~~~~---------------------------------~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~~  238 (336)
T 2ast_B          194 SETITQLNLSGYRK---------------------------------NLQKSDLSTLVR--RCPNLVHLDLSDSVMLKND  238 (336)
T ss_dssp             CTTCCEEECCSCGG---------------------------------GSCHHHHHHHHH--HCTTCSEEECTTCTTCCGG
T ss_pred             ccCCCEEEeCCCcc---------------------------------cCCHHHHHHHHh--hCCCCCEEeCCCCCcCCHH
Confidence            4 555555544421                                 11  12233332  26778888888887 4433


Q ss_pred             CC-CCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccC-CcccEEeeccCC
Q 002284          313 MP-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGF-PKLRELHIVRCS  390 (943)
Q Consensus       313 ~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-~~L~~L~l~~c~  390 (943)
                      .+ .++.+++|++|++++|..+........+     .+++|+.|++++|  +..       ..+..+ .+++.|++++ +
T Consensus       239 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~--i~~-------~~~~~l~~~l~~L~l~~-n  303 (336)
T 2ast_B          239 CFQEFFQLNYLQHLSLSRCYDIIPETLLELG-----EIPTLKTLQVFGI--VPD-------GTLQLLKEALPHLQINC-S  303 (336)
T ss_dssp             GGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-----GCTTCCEEECTTS--SCT-------TCHHHHHHHSTTSEESC-C
T ss_pred             HHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh-----cCCCCCEEeccCc--cCH-------HHHHHHHhhCcceEEec-c
Confidence            33 6777888888888888633222111122     2788888888877  211       122333 3467777865 7


Q ss_pred             CccCCCCCCC
Q 002284          391 KLQGTLPTHL  400 (943)
Q Consensus       391 ~l~~~~p~~l  400 (943)
                      ++++..|..+
T Consensus       304 ~l~~~~~~~~  313 (336)
T 2ast_B          304 HFTTIARPTI  313 (336)
T ss_dssp             CSCCTTCSSC
T ss_pred             cCccccCCcc
Confidence            8887777654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.64  E-value=1.5e-15  Score=155.56  Aligned_cols=80  Identities=21%  Similarity=0.229  Sum_probs=50.1

Q ss_pred             CcccEEEecCccccccCccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHhccccCceEEcC
Q 002284           89 QRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNS  167 (943)
Q Consensus        89 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~  167 (943)
                      ...++++++++.++.+|..+.  .+|++|+|++|.+..++ ..|+++++|++|++++|.+.+..|..|.++++|++|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            345566666666666665554  46666666666666663 356666666666666665444444456666666666666


Q ss_pred             CCC
Q 002284          168 NTD  170 (943)
Q Consensus       168 ~n~  170 (943)
                      +|.
T Consensus        92 ~n~   94 (251)
T 3m19_A           92 NNQ   94 (251)
T ss_dssp             TSC
T ss_pred             CCc
Confidence            666

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.63  E-value=4.5e-15  Score=160.29  Aligned_cols=224  Identities=18%  Similarity=0.135  Sum_probs=174.6

Q ss_pred             CCcccccEEEeecCCCchhhHh-hhcccccccEEEeeccCCcccccc-cccCCCCccEEeccCCCCCcccCc-CCccccc
Q 002284          675 NLPQALKFLSIWHCSKLESIVE-RLDNKISLEVIEIVSCENLKMLPH-GLHKLWHLQEIDIQDCENLVSFPE-GGLLSAK  751 (943)
Q Consensus       675 ~lp~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~l~~~p~-~~~~l~~  751 (943)
                      .+|+++++|++++|. ++.++. .|.++++|++|++++|++.+.+|. .|.++++++++.+.++..+..++. .+..+++
T Consensus        27 ~l~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~  105 (350)
T 4ay9_X           27 DLPRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN  105 (350)
T ss_dssp             TCCTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred             CcCCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccc
Confidence            356789999999975 556654 689999999999999999887764 578899988765555446666654 5677899


Q ss_pred             cceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCC--CCCcceEEecCCcchhccccccCCCCCCCccEE
Q 002284          752 LKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLF--PTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRL  829 (943)
Q Consensus       752 L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L  829 (943)
                      |++|++++|......+..+....++..|++.++..+..++...+.  ...++.|++++|.......   .+...++|++|
T Consensus       106 L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~---~~f~~~~L~~l  182 (350)
T 4ay9_X          106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN---SAFNGTQLDEL  182 (350)
T ss_dssp             CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT---TSSTTEEEEEE
T ss_pred             cccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh---hhccccchhHH
Confidence            999999998865544445666778888999888888888876432  2568899999987654332   33456789999


Q ss_pred             EecCCCCcCcccCcccccccCCCCCCccEEEeecCCCCcccccccCCCCCCeEeecCCCCCccCCCCCCCCccceEeecC
Q 002284          830 AISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSICDQNLTSLKLTNCPKLKYFPEKGLPASLLRLEIKK  909 (943)
Q Consensus       830 ~l~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~C~~L~~~~~~~l~~sL~~L~i~~  909 (943)
                      ++++ ++.++.++.+..    ..+++|++|+++++ +++.+|.. .+.+|++|.+.+|+.++.+|...-.++|+.+++.+
T Consensus       183 ~l~~-~n~l~~i~~~~f----~~l~~L~~LdLs~N-~l~~lp~~-~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          183 NLSD-NNNLEELPNDVF----HGASGPVILDISRT-RIHSLPSY-GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY  255 (350)
T ss_dssp             ECTT-CTTCCCCCTTTT----TTEECCSEEECTTS-CCCCCCSS-SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred             hhcc-CCcccCCCHHHh----ccCcccchhhcCCC-CcCccChh-hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence            9998 588888887543    35788999999986 79999876 79999999999999999998755568899998865

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.62  E-value=7.5e-16  Score=162.90  Aligned_cols=195  Identities=17%  Similarity=0.203  Sum_probs=146.0

Q ss_pred             ccccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhc
Q 002284           55 LYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKL  134 (943)
Q Consensus        55 ~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L  134 (943)
                      ..++++|++|.+.++.      + ..++ ++..+++|++|++++|.+..++. +..+++|++|++++|.++.+| .++.+
T Consensus        37 ~~~l~~L~~L~l~~~~------i-~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l  106 (308)
T 1h6u_A           37 QADLDGITTLSAFGTG------V-TTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGL  106 (308)
T ss_dssp             HHHHHTCCEEECTTSC------C-CCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTC
T ss_pred             HHHcCCcCEEEeeCCC------c-cCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCC
Confidence            3467788888775542      2 2343 56689999999999999988876 899999999999999999886 68899


Q ss_pred             cccceeecCCCcccccccHHHhccccCceEEcCCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCce
Q 002284          135 YNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTL  214 (943)
Q Consensus       135 ~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l  214 (943)
                      ++|++|++++|. +..+|. +..+++|++|++++|. +..++. ++.+++|+.|+...+                     
T Consensus       107 ~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n---------------------  161 (308)
T 1h6u_A          107 QSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNA---------------------  161 (308)
T ss_dssp             TTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSS---------------------
T ss_pred             CCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCC---------------------
Confidence            999999999987 444553 8899999999999998 666654 777777777732211                     


Q ss_pred             eecccccccCccchhhcccCCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCC
Q 002284          215 NISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYS  294 (943)
Q Consensus       215 ~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~  294 (943)
                         .+..       +.. +..+++|+.|++++|.++...             .+..+++|+.|+++++....++. +  .
T Consensus       162 ---~l~~-------~~~-l~~l~~L~~L~l~~n~l~~~~-------------~l~~l~~L~~L~L~~N~l~~~~~-l--~  214 (308)
T 1h6u_A          162 ---QVSD-------LTP-LANLSKLTTLKADDNKISDIS-------------PLASLPNLIEVHLKNNQISDVSP-L--A  214 (308)
T ss_dssp             ---CCCC-------CGG-GTTCTTCCEEECCSSCCCCCG-------------GGGGCTTCCEEECTTSCCCBCGG-G--T
T ss_pred             ---cCCC-------Chh-hcCCCCCCEEECCCCccCcCh-------------hhcCCCCCCEEEccCCccCcccc-c--c
Confidence               1110       111 567788899999888875321             25567889999999988887774 3  3


Q ss_pred             CcCCeeEEEEeCCCCCC
Q 002284          295 LFSNLVTLKFQDCSMCT  311 (943)
Q Consensus       295 ~l~~L~~L~L~~n~~~~  311 (943)
                      .+++|++|++++|.+.+
T Consensus       215 ~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          215 NTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             TCTTCCEEEEEEEEEEC
T ss_pred             CCCCCCEEEccCCeeec
Confidence            48999999999998854

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.61  E-value=6.1e-16  Score=166.88  Aligned_cols=247  Identities=15%  Similarity=0.167  Sum_probs=118.2

Q ss_pred             eceEEEecCCCcCccchhccCC--CCcCeeeccCCCCCcccCCCCCCCCccEEEEecCCCCCc-CccccccCCCCCccEE
Q 002284          518 LEHLELINCQDLEKLPKSLLSL--SSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKF-LPEAWMLDNNSSLEIL  594 (943)
Q Consensus       518 L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~L~~n~~l~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~l~~L~~L  594 (943)
                      ++.++++++...   +..+..+  ++++.|++++|......+....+++|++|++++|..... ++..  +..+++|++|
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~--~~~~~~L~~L  123 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI--LSQCSKLQNL  123 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH--HTTBCCCSEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH--HhhCCCCCEE
Confidence            455555555332   3333444  556666666665444333333356666666666653222 3333  3466777777


Q ss_pred             EeecCCCcccccC-cCCCCCCceEEeccCcCccccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhc
Q 002284          595 DIRHCHLLTYIAG-VQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVV  673 (943)
Q Consensus       595 ~l~~n~~~~~~~~-~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~  673 (943)
                      ++++|.+....+. ....++|++|++++|..++...    ....+..++                               
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~----l~~~~~~~~-------------------------------  168 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA----LQTLLSSCS-------------------------------  168 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH----HHHHHHHCT-------------------------------
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHH----HHHHHhcCC-------------------------------
Confidence            7777764433222 1234556666666664443210    001112233                               


Q ss_pred             CCCcccccEEEeecCCCchh--hHhhhcccc-cccEEEeeccC--Cc-ccccccccCCCCccEEeccCCCCC-cccCcCC
Q 002284          674 GNLPQALKFLSIWHCSKLES--IVERLDNKI-SLEVIEIVSCE--NL-KMLPHGLHKLWHLQEIDIQDCENL-VSFPEGG  746 (943)
Q Consensus       674 ~~lp~~L~~L~l~~~~~l~~--~~~~~~~l~-~L~~L~l~~~~--~~-~~~p~~~~~l~~L~~L~l~~~~~l-~~~p~~~  746 (943)
                           +|++|++++|..++.  ++..+..++ +|++|++++|.  .. +.+|..+.++++|++|++++|..+ ...+..+
T Consensus       169 -----~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l  243 (336)
T 2ast_B          169 -----RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF  243 (336)
T ss_dssp             -----TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred             -----CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH
Confidence                 455555555522221  344455555 55555555552  22 334444555666666666666522 3344444


Q ss_pred             ccccccceeeeccccCCc-cCCCcCCCCCCCCceeecCCCCCccccCCCC-CC-CCcceEEecCCcchhcc
Q 002284          747 LLSAKLKRLVIYGCKKLE-ALPEGMHNLSSLQYLTIGGVPSLLCFTEDGL-FP-TNLHSLEIDGMKIWKSL  814 (943)
Q Consensus       747 ~~l~~L~~L~l~~~~~l~-~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~~-~~L~~L~l~~c~~l~~~  814 (943)
                      ..+++|++|++++|.... .....+..+++|++|++++|     ++.... .+ .+|+.|++++|......
T Consensus       244 ~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~~  309 (336)
T 2ast_B          244 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHFTTIA  309 (336)
T ss_dssp             GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCSCCTT
T ss_pred             hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecccCcccc
Confidence            555566666666654111 10113455666666666665     222211 01 33555666555544433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.59  E-value=3.1e-16  Score=170.41  Aligned_cols=104  Identities=13%  Similarity=0.086  Sum_probs=79.1

Q ss_pred             CCCCcchhccchhhhccCcccEEEecCccccccC-----ccccCCC-CCceeecCCCccccc-chhhhhc-----cccce
Q 002284           72 SRPGYLARSILPRLLKLQRLRVFSLRGYLISEVP-----DSIGDLS-YLRYLNLSGTQIRTL-PESVNKL-----YNLHT  139 (943)
Q Consensus        72 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp-----~~~~~l~-~L~~L~Ls~n~i~~l-p~~i~~L-----~~L~~  139 (943)
                      +++|.+++.+|..+...++|++|||++|.++..+     ..+.+++ +|++|+|++|.|... +..+..+     ++|++
T Consensus         5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~   84 (362)
T 3goz_A            5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS   84 (362)
T ss_dssp             CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred             cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence            3456666666554446667999999999988875     6678888 899999999999877 5677776     89999


Q ss_pred             eecCCCcccccccHHHhcc-----ccCceEEcCCCCCCcccc
Q 002284          140 LLLEGCRELKKKCADMGNL-----IKLHHLNNSNTDSLEEMP  176 (943)
Q Consensus       140 L~L~~n~~~~~~p~~~~~L-----~~L~~L~l~~n~~~~~~p  176 (943)
                      |++++|.+....+..+...     ++|++|++++|. ++..+
T Consensus        85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~  125 (362)
T 3goz_A           85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKS  125 (362)
T ss_dssp             EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred             EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHH
Confidence            9999997655666555443     899999999998 44443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.59  E-value=1e-16  Score=176.37  Aligned_cols=90  Identities=21%  Similarity=0.215  Sum_probs=54.0

Q ss_pred             cchhhhccCcccEEEecCccccc-----cCccccCCCCCceeecCCCccc----ccchhh-------hhccccceeecCC
Q 002284           81 ILPRLLKLQRLRVFSLRGYLISE-----VPDSIGDLSYLRYLNLSGTQIR----TLPESV-------NKLYNLHTLLLEG  144 (943)
Q Consensus        81 ~~~~~~~l~~L~~L~L~~n~i~~-----lp~~~~~l~~L~~L~Ls~n~i~----~lp~~i-------~~L~~L~~L~L~~  144 (943)
                      ++..+..+++|++|+|++|.++.     ++..+..+++|++|+|++|.+.    .+|..+       ..+++|++|+|++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            34444466667777777766554     2334556667777777766444    223333       4666777777777


Q ss_pred             Ccccc----cccHHHhccccCceEEcCCCC
Q 002284          145 CRELK----KKCADMGNLIKLHHLNNSNTD  170 (943)
Q Consensus       145 n~~~~----~~p~~~~~L~~L~~L~l~~n~  170 (943)
                      |.+..    .+|..+.++++|++|++++|.
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  133 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  133 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence            65443    356666667777777777766

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.56  E-value=5.9e-15  Score=154.46  Aligned_cols=96  Identities=23%  Similarity=0.322  Sum_probs=73.1

Q ss_pred             ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284           87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN  166 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l  166 (943)
                      .+++|++|++++|.+..+| .+..+++|++|++++|+++.++. ++++++|++|++++|. +..+| .++.+++|++|++
T Consensus        44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L  119 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSL  119 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEEC
T ss_pred             hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEEC
Confidence            7888889999988888886 48888899999999998888866 8888999999999886 44444 4888888999999


Q ss_pred             CCCCCCcccccccccccccccc
Q 002284          167 SNTDSLEEMPLGIGKLTCLLTL  188 (943)
Q Consensus       167 ~~n~~~~~~p~~~~~L~~L~~L  188 (943)
                      ++|. +..++ .++.+++|+.|
T Consensus       120 ~~n~-i~~~~-~l~~l~~L~~L  139 (291)
T 1h6t_A          120 EHNG-ISDIN-GLVHLPQLESL  139 (291)
T ss_dssp             TTSC-CCCCG-GGGGCTTCCEE
T ss_pred             CCCc-CCCCh-hhcCCCCCCEE
Confidence            8887 44442 34444444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.55  E-value=7.9e-16  Score=167.25  Aligned_cols=59  Identities=7%  Similarity=0.033  Sum_probs=27.2

Q ss_pred             ccccEEEeecCCCch----hhHhhhcccc-cccEEEeeccCCccccccc----ccCC-CCccEEeccCC
Q 002284          678 QALKFLSIWHCSKLE----SIVERLDNKI-SLEVIEIVSCENLKMLPHG----LHKL-WHLQEIDIQDC  736 (943)
Q Consensus       678 ~~L~~L~l~~~~~l~----~~~~~~~~l~-~L~~L~l~~~~~~~~~p~~----~~~l-~~L~~L~l~~~  736 (943)
                      ++|++|++++|....    .++..+...+ +|++|++++|.+.+..+..    +... ++|++|++++|
T Consensus       138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N  206 (362)
T 3goz_A          138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN  206 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence            345555555543331    3333333333 5555555555544433322    2223 35666666655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.55  E-value=6.9e-16  Score=169.64  Aligned_cols=129  Identities=13%  Similarity=0.118  Sum_probs=93.1

Q ss_pred             cccccccccEEeecccCCCCCCcchhccchh----hhccCcccEEEecCccccc----cCcc-------ccCCCCCceee
Q 002284           54 DLYDIQHLRTLLPVTLLSSRPGYLARSILPR----LLKLQRLRVFSLRGYLISE----VPDS-------IGDLSYLRYLN  118 (943)
Q Consensus        54 ~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~----~~~l~~L~~L~L~~n~i~~----lp~~-------~~~l~~L~~L~  118 (943)
                      .+..+++|++|.+.+      |.+....+..    +..+++|++|+|++|.+..    +|..       +..+++|++|+
T Consensus        27 ~l~~~~~L~~L~L~~------n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~  100 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSG------NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR  100 (386)
T ss_dssp             HHHHCSCCCEEECTT------SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHhcCCCccEEECCC------CCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence            455678899997654      4555543333    4489999999999986543    3434       37899999999


Q ss_pred             cCCCcccc-----cchhhhhccccceeecCCCcccccccH----HHhcc---------ccCceEEcCCCCCC-cccc---
Q 002284          119 LSGTQIRT-----LPESVNKLYNLHTLLLEGCRELKKKCA----DMGNL---------IKLHHLNNSNTDSL-EEMP---  176 (943)
Q Consensus       119 Ls~n~i~~-----lp~~i~~L~~L~~L~L~~n~~~~~~p~----~~~~L---------~~L~~L~l~~n~~~-~~~p---  176 (943)
                      |++|.+..     +|..+..+++|++|+|++|.+....+.    .+..+         ++|++|++++|.+. ..+|   
T Consensus       101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~  180 (386)
T 2ca6_A          101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA  180 (386)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence            99999986     788899999999999999976443333    34445         89999999999843 2444   


Q ss_pred             cccccccccccc
Q 002284          177 LGIGKLTCLLTL  188 (943)
Q Consensus       177 ~~~~~L~~L~~L  188 (943)
                      ..+..+++|++|
T Consensus       181 ~~l~~~~~L~~L  192 (386)
T 2ca6_A          181 KTFQSHRLLHTV  192 (386)
T ss_dssp             HHHHHCTTCCEE
T ss_pred             HHHHhCCCcCEE
Confidence            235555566555

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.54  E-value=9.1e-14  Score=142.33  Aligned_cols=155  Identities=15%  Similarity=0.122  Sum_probs=115.9

Q ss_pred             CcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccC-cCCccccccce
Q 002284          676 LPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFP-EGGLLSAKLKR  754 (943)
Q Consensus       676 lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p-~~~~~l~~L~~  754 (943)
                      +|+.++.|++++|...+..+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.. +.+| ..+..+++|++
T Consensus        33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~  111 (251)
T 3m19_A           33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDK  111 (251)
T ss_dssp             CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCE
T ss_pred             CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc-cccChhHhcccCCCCE
Confidence            346788888888776666666788888889999988888887777788888899999988854 4444 44567888889


Q ss_pred             eeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCC-CCCCCCcceEEecCCcchhccccccCCCCCCCccEEEecC
Q 002284          755 LVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTED-GLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISG  833 (943)
Q Consensus       755 L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~  833 (943)
                      |++++|...+..+..+..+++|++|++++|. +..++.. +..+++|++|++++|.......  ..+..+++|++|++++
T Consensus       112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~  188 (251)
T 3m19_A          112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPH--GAFDRLGKLQTITLFG  188 (251)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCS
T ss_pred             EEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCH--HHHhCCCCCCEEEeeC
Confidence            9998887554444456888888888888875 5555553 4456888888888887654333  2567788888888887


Q ss_pred             C
Q 002284          834 C  834 (943)
Q Consensus       834 c  834 (943)
                      +
T Consensus       189 N  189 (251)
T 3m19_A          189 N  189 (251)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.51  E-value=7.7e-14  Score=139.23  Aligned_cols=83  Identities=17%  Similarity=0.275  Sum_probs=59.2

Q ss_pred             cEEEecCccccccCccccCCCCCceeecCCCcccccch-hhhhccccceeecCCCcccccccHHHhccccCceEEcCCCC
Q 002284           92 RVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPE-SVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTD  170 (943)
Q Consensus        92 ~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~  170 (943)
                      +.++++++.++.+|..+.  ++|++|++++|+|+.+|. .|..+++|++|+|++|.+.+..|..|.++++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            567777777777776654  577777777777777753 67777777777777776555556777777777777777777


Q ss_pred             CCccccc
Q 002284          171 SLEEMPL  177 (943)
Q Consensus       171 ~~~~~p~  177 (943)
                       +..+|.
T Consensus        92 -l~~l~~   97 (220)
T 2v9t_B           92 -ITELPK   97 (220)
T ss_dssp             -CCCCCT
T ss_pred             -CCccCH
Confidence             444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.50  E-value=1.1e-14  Score=149.72  Aligned_cols=167  Identities=20%  Similarity=0.245  Sum_probs=93.2

Q ss_pred             ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284           87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN  166 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l  166 (943)
                      .+.++..++++++.++.++ .+..+++|++|++++|.|+.+| .++.+++|++|++++|. +..+|. ++++++|++|++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEEC
T ss_pred             HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEEC
Confidence            3455555566666666555 4566666666666666666665 56666666666666664 333333 666666666666


Q ss_pred             CCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEe
Q 002284          167 SNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEW  246 (943)
Q Consensus       167 ~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  246 (943)
                      ++|. +..+|....                                                        ++|+.|++++
T Consensus        93 ~~N~-l~~l~~~~~--------------------------------------------------------~~L~~L~L~~  115 (263)
T 1xeu_A           93 NRNR-LKNLNGIPS--------------------------------------------------------ACLSRLFLDN  115 (263)
T ss_dssp             CSSC-CSCCTTCCC--------------------------------------------------------SSCCEEECCS
T ss_pred             CCCc-cCCcCcccc--------------------------------------------------------CcccEEEccC
Confidence            6665 333332111                                                        2233333333


Q ss_pred             ecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCCCCCCCCCCCeeE
Q 002284          247 TRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLE  326 (943)
Q Consensus       247 n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~  326 (943)
                      |.++.             ++.+..+++|+.|+++++....+| .+.  .+++|++|++++|.+.+. +.+..+++|+.|+
T Consensus       116 N~l~~-------------~~~l~~l~~L~~L~Ls~N~i~~~~-~l~--~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~  178 (263)
T 1xeu_A          116 NELRD-------------TDSLIHLKNLEILSIRNNKLKSIV-MLG--FLSKLEVLDLHGNEITNT-GGLTRLKKVNWID  178 (263)
T ss_dssp             SCCSB-------------SGGGTTCTTCCEEECTTSCCCBCG-GGG--GCTTCCEEECTTSCCCBC-TTSTTCCCCCEEE
T ss_pred             CccCC-------------ChhhcCcccccEEECCCCcCCCCh-HHc--cCCCCCEEECCCCcCcch-HHhccCCCCCEEe
Confidence            33321             012223334444444444444444 222  277888888888888665 6677788888888


Q ss_pred             EecCc
Q 002284          327 VRGMS  331 (943)
Q Consensus       327 L~~~~  331 (943)
                      +++|+
T Consensus       179 l~~N~  183 (263)
T 1xeu_A          179 LTGQK  183 (263)
T ss_dssp             EEEEE
T ss_pred             CCCCc
Confidence            88876

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.50  E-value=2.4e-14  Score=140.50  Aligned_cols=95  Identities=17%  Similarity=0.247  Sum_probs=69.7

Q ss_pred             hccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEE
Q 002284           86 LKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLN  165 (943)
Q Consensus        86 ~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~  165 (943)
                      ..+++|++|++++|.++.+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+.+..|..|+.+++|++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            36778888888888888777 6788888888888888776664 677788888888888876666677788888888888


Q ss_pred             cCCCCCCcccccccccc
Q 002284          166 NSNTDSLEEMPLGIGKL  182 (943)
Q Consensus       166 l~~n~~~~~~p~~~~~L  182 (943)
                      +++|.+....|..++.+
T Consensus       119 Ls~n~i~~~~~~~l~~l  135 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTL  135 (197)
T ss_dssp             CCSSBCBGGGHHHHTTC
T ss_pred             ecCCccCcHhHHHHhhC
Confidence            88877333333333333

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.50  E-value=1.5e-13  Score=136.20  Aligned_cols=77  Identities=23%  Similarity=0.299  Sum_probs=45.9

Q ss_pred             cEEEecCccccccCccccCCCCCceeecCCCcccccch-hhhhccccceeecCCCcccccccHHHhccccCceEEcCCCC
Q 002284           92 RVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPE-SVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTD  170 (943)
Q Consensus        92 ~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~  170 (943)
                      +.++++++.++.+|..+.  ++|++|++++|+++.+|. .|+.+++|++|++++|.+.+..+..|..+++|++|++++|.
T Consensus        10 ~~v~c~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCCC--CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            355666666666665442  466666666666666643 45666666666666665333333335666666666666665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.48  E-value=3.6e-14  Score=162.94  Aligned_cols=97  Identities=23%  Similarity=0.315  Sum_probs=69.2

Q ss_pred             hccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEE
Q 002284           86 LKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLN  165 (943)
Q Consensus        86 ~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~  165 (943)
                      ..+++|+.|++++|.+..+| .|..+++|++|+|++|.|..+|. ++.+++|++|+|++|. +..+| .+..+++|++|+
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLS  115 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEE
T ss_pred             hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEE
Confidence            36788888888888887776 47788888888888888887765 7888888888888875 44444 677888888888


Q ss_pred             cCCCCCCcccccccccccccccc
Q 002284          166 NSNTDSLEEMPLGIGKLTCLLTL  188 (943)
Q Consensus       166 l~~n~~~~~~p~~~~~L~~L~~L  188 (943)
                      +++|. +..++ .++.+++|+.|
T Consensus       116 Ls~N~-l~~l~-~l~~l~~L~~L  136 (605)
T 1m9s_A          116 LEHNG-ISDIN-GLVHLPQLESL  136 (605)
T ss_dssp             CTTSC-CCCCG-GGGGCTTCSEE
T ss_pred             ecCCC-CCCCc-cccCCCccCEE
Confidence            88887 44432 24444444444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.48  E-value=4.7e-14  Score=159.95  Aligned_cols=178  Identities=16%  Similarity=0.133  Sum_probs=118.2

Q ss_pred             cccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEcCCC
Q 002284           90 RLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNT  169 (943)
Q Consensus        90 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n  169 (943)
                      +|++|+|++|.++.+|..+.  ++|++|+|++|.|+.+|   +.+++|++|++++|.+ ..+|. +.+  +|++|++++|
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l-~~ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRL-STLPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCC-SCCCC-CCT--TCCEEECCSS
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCC-CCcch-hhc--CCCEEECCCC
Confidence            88899999888888887664  78899999999888888   4578889999998864 44776 665  8899999988


Q ss_pred             CCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEeecC
Q 002284          170 DSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRS  249 (943)
Q Consensus       170 ~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~  249 (943)
                      . +..+|.   .+++|+.|+...+                        .+..       ++.   .+++|+.|++++|.+
T Consensus       131 ~-l~~lp~---~l~~L~~L~Ls~N------------------------~l~~-------lp~---~l~~L~~L~Ls~N~L  172 (571)
T 3cvr_A          131 Q-LTMLPE---LPALLEYINADNN------------------------QLTM-------LPE---LPTSLEVLSVRNNQL  172 (571)
T ss_dssp             C-CSCCCC---CCTTCCEEECCSS------------------------CCSC-------CCC---CCTTCCEEECCSSCC
T ss_pred             c-CCCCCC---cCccccEEeCCCC------------------------ccCc-------CCC---cCCCcCEEECCCCCC
Confidence            8 555776   4566665522111                        1110       000   245677777777776


Q ss_pred             CCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCe-------eEEEEeCCCCCCCCCCCCCCCCC
Q 002284          250 TNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNL-------VTLKFQDCSMCTSMPSVGQLPSL  322 (943)
Q Consensus       250 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L-------~~L~L~~n~~~~~~~~~~~l~~L  322 (943)
                      +.++.             +.  ++|+.|++++|....+|. +.    .+|       +.|++++|.+....+.+..+++|
T Consensus       173 ~~lp~-------------l~--~~L~~L~Ls~N~L~~lp~-~~----~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L  232 (571)
T 3cvr_A          173 TFLPE-------------LP--ESLEALDVSTNLLESLPA-VP----VRNHHSEETEIFFRCRENRITHIPENILSLDPT  232 (571)
T ss_dssp             SCCCC-------------CC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCCCCCGGGGGSCTT
T ss_pred             CCcch-------------hh--CCCCEEECcCCCCCchhh-HH----HhhhcccccceEEecCCCcceecCHHHhcCCCC
Confidence            53211             22  577777777777777766 32    145       77777777776433355567777


Q ss_pred             CeeEEecCcCce
Q 002284          323 KHLEVRGMSRVK  334 (943)
Q Consensus       323 ~~L~L~~~~~~~  334 (943)
                      +.|++++|+..+
T Consensus       233 ~~L~L~~N~l~~  244 (571)
T 3cvr_A          233 CTIILEDNPLSS  244 (571)
T ss_dssp             EEEECCSSSCCH
T ss_pred             CEEEeeCCcCCC
Confidence            777777776443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.47  E-value=1.6e-13  Score=143.53  Aligned_cols=120  Identities=19%  Similarity=0.307  Sum_probs=94.0

Q ss_pred             ccccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhc
Q 002284           55 LYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKL  134 (943)
Q Consensus        55 ~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L  134 (943)
                      ..++++|+.|.+.++      .+ ..+ +++..+++|++|++++|.++.++. +..+++|++|++++|.++.+|. ++.+
T Consensus        42 ~~~l~~L~~L~l~~~------~i-~~~-~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l  111 (291)
T 1h6t_A           42 QNELNSIDQIIANNS------DI-KSV-QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDL  111 (291)
T ss_dssp             HHHHHTCCEEECTTS------CC-CCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTC
T ss_pred             hhhcCcccEEEccCC------Cc-ccC-hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccC
Confidence            446788898877554      22 233 346689999999999999999876 9999999999999999999864 8999


Q ss_pred             cccceeecCCCcccccccHHHhccccCceEEcCCCCCCcccccccccccccccc
Q 002284          135 YNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTL  188 (943)
Q Consensus       135 ~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L  188 (943)
                      ++|++|++++|.+ ..+ ..+..+++|++|++++|. +..+ ..++.+++|++|
T Consensus       112 ~~L~~L~L~~n~i-~~~-~~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L  161 (291)
T 1h6t_A          112 KKLKSLSLEHNGI-SDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTL  161 (291)
T ss_dssp             TTCCEEECTTSCC-CCC-GGGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEE
T ss_pred             CCCCEEECCCCcC-CCC-hhhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEE
Confidence            9999999999974 444 468999999999999998 5544 345555555555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.47  E-value=1.3e-13  Score=156.37  Aligned_cols=91  Identities=29%  Similarity=0.423  Sum_probs=47.8

Q ss_pred             eeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCCCCCccEEEEecCCCCCcCccccccCCCCCccEEEe
Q 002284          517 RLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDI  596 (943)
Q Consensus       517 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l  596 (943)
                      +|+.|++++|.+.+ +|..+  +++|++|++++|. ++.+|  ..+++|++|++++|.. +.+|. +.  .  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~-l~~ip--~~l~~L~~L~Ls~N~l-~~ip~-l~--~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNA-LISLP--ELPASLEYLDACDNRL-STLPE-LP--A--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSC-CSCCC--CCCTTCCEEECCSSCC-SCCCC-CC--T--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCC-Ccccc--cccCCCCEEEccCCCC-CCcch-hh--c--CCCEEEC
Confidence            56666666664433 55433  2566666666664 33555  3456666666666653 33444 21  1  5666666


Q ss_pred             ecCCCcccccCcCCCCCCceEEeccC
Q 002284          597 RHCHLLTYIAGVQLPPSLKQLEIYNC  622 (943)
Q Consensus       597 ~~n~~~~~~~~~~~~~~L~~L~l~~~  622 (943)
                      ++|.+.+ +|.  .+++|+.|++++|
T Consensus       128 s~N~l~~-lp~--~l~~L~~L~Ls~N  150 (571)
T 3cvr_A          128 DNNQLTM-LPE--LPALLEYINADNN  150 (571)
T ss_dssp             CSSCCSC-CCC--CCTTCCEEECCSS
T ss_pred             CCCcCCC-CCC--cCccccEEeCCCC
Confidence            6665433 333  3444555555444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.45  E-value=3.7e-13  Score=135.25  Aligned_cols=77  Identities=23%  Similarity=0.240  Sum_probs=47.9

Q ss_pred             ccEEEecCccccccCccccCCCCCceeecCCCccccc-chhhhhccccceeecCCCccccccc-HHHhccccCceEEcCC
Q 002284           91 LRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTL-PESVNKLYNLHTLLLEGCRELKKKC-ADMGNLIKLHHLNNSN  168 (943)
Q Consensus        91 L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p-~~~~~L~~L~~L~l~~  168 (943)
                      -+.++.+++.++.+|..+.  ++|++|+|++|.|+.+ |..|..+++|++|+|++|.+ ..+| ..|..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence            3456666666666665554  5666666666666666 45566666666666666653 3333 3356666666666666


Q ss_pred             CC
Q 002284          169 TD  170 (943)
Q Consensus       169 n~  170 (943)
                      |.
T Consensus        98 N~   99 (229)
T 3e6j_A           98 NQ   99 (229)
T ss_dssp             SC
T ss_pred             Cc
Confidence            66

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.45  E-value=2.8e-13  Score=132.83  Aligned_cols=104  Identities=16%  Similarity=0.108  Sum_probs=66.6

Q ss_pred             cccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeec
Q 002284          679 ALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIY  758 (943)
Q Consensus       679 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~  758 (943)
                      +|++|++++|......+..+..+++|++|++++|.+.+..|..+..+++|++|++++|..++.+| .+..+++|+.|+++
T Consensus        89 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~  167 (197)
T 4ezg_A           89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQ  167 (197)
T ss_dssp             TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECT
T ss_pred             CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECC
Confidence            56666666655544455556666777777777777666666667777777777777775466665 45566677777777


Q ss_pred             cccCCccCCCcCCCCCCCCceeecCCC
Q 002284          759 GCKKLEALPEGMHNLSSLQYLTIGGVP  785 (943)
Q Consensus       759 ~~~~l~~~p~~~~~l~~L~~L~l~~~~  785 (943)
                      +|.. ..++ .+..+++|++|++++|+
T Consensus       168 ~n~i-~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          168 FDGV-HDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             TBCC-CCCT-TGGGCSSCCEEEECBC-
T ss_pred             CCCC-cChH-HhccCCCCCEEEeeCcc
Confidence            7663 3343 55666677777776665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.45  E-value=3.1e-13  Score=134.79  Aligned_cols=77  Identities=12%  Similarity=0.171  Sum_probs=45.4

Q ss_pred             cEEEecCccccccCccccCCCCCceeecCCCcccccc--hhhhhccccceeecCCCcccccccHHHhccccCceEEcCCC
Q 002284           92 RVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLP--ESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNT  169 (943)
Q Consensus        92 ~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp--~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n  169 (943)
                      +++++++|.++.+|..+.  ..+++|+|++|.|+.++  ..|+.+++|++|++++|.+.+..|..|+++++|++|++++|
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            356666666666665543  23466666666666652  23566666666666666544443445666666666666666


Q ss_pred             C
Q 002284          170 D  170 (943)
Q Consensus       170 ~  170 (943)
                      .
T Consensus        92 ~   92 (220)
T 2v70_A           92 R   92 (220)
T ss_dssp             C
T ss_pred             c
Confidence            6

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.43  E-value=1.3e-13  Score=149.38  Aligned_cols=81  Identities=20%  Similarity=0.090  Sum_probs=44.7

Q ss_pred             cccEEEecCccccccCc-ccc-CCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284           90 RLRVFSLRGYLISEVPD-SIG-DLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN  166 (943)
Q Consensus        90 ~L~~L~L~~n~i~~lp~-~~~-~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l  166 (943)
                      .+++|+|++|.++.++. .|. ++++|++|+|++|+|+.+| ..|.++++|++|+|++|.+....+..|..+++|++|++
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  119 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL  119 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence            35556666666655532 333 5666666666666666554 34556666666666665433333334555666666666


Q ss_pred             CCCC
Q 002284          167 SNTD  170 (943)
Q Consensus       167 ~~n~  170 (943)
                      ++|.
T Consensus       120 ~~N~  123 (361)
T 2xot_A          120 YNNH  123 (361)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            6555

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.42  E-value=1.3e-13  Score=158.44  Aligned_cols=96  Identities=16%  Similarity=0.240  Sum_probs=76.3

Q ss_pred             ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284           87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN  166 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l  166 (943)
                      .+..+..+.+..+.+..++ .+..+.+|++|++++|.|..+| .++.+++|++|+|++|.+.+ +|. +..+++|++|++
T Consensus        19 ~l~~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~L   94 (605)
T 1m9s_A           19 AFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEEC
T ss_pred             HHHHHHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEEC
Confidence            4455666677777776653 3678999999999999999997 68999999999999997544 444 999999999999


Q ss_pred             CCCCCCcccccccccccccccc
Q 002284          167 SNTDSLEEMPLGIGKLTCLLTL  188 (943)
Q Consensus       167 ~~n~~~~~~p~~~~~L~~L~~L  188 (943)
                      ++|. +..+| .++.+++|+.|
T Consensus        95 s~N~-l~~l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           95 DENK-IKDLS-SLKDLKKLKSL  114 (605)
T ss_dssp             CSSC-CCCCT-TSTTCTTCCEE
T ss_pred             cCCC-CCCCh-hhccCCCCCEE
Confidence            9998 55555 56667777666

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.37  E-value=7.7e-13  Score=123.14  Aligned_cols=126  Identities=17%  Similarity=0.140  Sum_probs=102.9

Q ss_pred             ccccccEEeecccCCCCCCcch-hccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccc-cchhhhhc
Q 002284           57 DIQHLRTLLPVTLLSSRPGYLA-RSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRT-LPESVNKL  134 (943)
Q Consensus        57 ~~~~Lr~L~~~~~~~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~-lp~~i~~L  134 (943)
                      ..++|+.|.+.+      |.+. +.+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++.+
T Consensus        15 ~~~~l~~L~l~~------n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l   87 (149)
T 2je0_A           15 TPSDVKELVLDN------SRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKC   87 (149)
T ss_dssp             CGGGCSEEECTT------CBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred             CCccCeEEEccC------CcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence            346788886644      3455 57777666999999999999999888 788999999999999999998 78888889


Q ss_pred             cccceeecCCCccccc-ccHHHhccccCceEEcCCCCCCccccc----cccccccccccCc
Q 002284          135 YNLHTLLLEGCRELKK-KCADMGNLIKLHHLNNSNTDSLEEMPL----GIGKLTCLLTLCN  190 (943)
Q Consensus       135 ~~L~~L~L~~n~~~~~-~p~~~~~L~~L~~L~l~~n~~~~~~p~----~~~~L~~L~~L~~  190 (943)
                      ++|++|++++|.+.+. .|..++.+++|++|++++|. +..+|.    .++.+++|+.|+.
T Consensus        88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence            9999999999974442 23679999999999999998 666665    5888888888853

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.37  E-value=4.2e-12  Score=126.59  Aligned_cols=133  Identities=11%  Similarity=0.105  Sum_probs=100.7

Q ss_pred             CcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcC-Cccccccce
Q 002284          676 LPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEG-GLLSAKLKR  754 (943)
Q Consensus       676 lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~-~~~l~~L~~  754 (943)
                      +|+.++.|++++|...+..+..+..+++|+.|++++|.+.+..|..|.++++|++|+|++| .++.+|.. +..+++|+.
T Consensus        30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~  108 (220)
T 2v9t_B           30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQL  108 (220)
T ss_dssp             CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCE
Confidence            3467888888887655544556888888888898888888877888888888999999888 45566665 456888888


Q ss_pred             eeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCC-CCCCCCcceEEecCCcc
Q 002284          755 LVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTED-GLFPTNLHSLEIDGMKI  810 (943)
Q Consensus       755 L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~  810 (943)
                      |++++|...+..|..+..+++|++|++++|. +..++.+ +..+++|+.|++++|+.
T Consensus       109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             EECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence            8888888776667788888888888888877 4444443 44457777777777764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.36  E-value=4.7e-12  Score=126.22  Aligned_cols=135  Identities=12%  Similarity=-0.071  Sum_probs=88.8

Q ss_pred             cccccEEEeecCCCchhhH-hhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCcccccccee
Q 002284          677 PQALKFLSIWHCSKLESIV-ERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRL  755 (943)
Q Consensus       677 p~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L  755 (943)
                      |..+++|++++|...+..+ ..+..+++|++|++++|.+.+..+..|.++++|++|++++|...+..+..+..+++|++|
T Consensus        31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  110 (220)
T 2v70_A           31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL  110 (220)
T ss_dssp             CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred             CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence            3456777777765444323 336677777777777777776666677777777777777775433333345667777777


Q ss_pred             eeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceEEecCCcch
Q 002284          756 VIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIW  811 (943)
Q Consensus       756 ~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l  811 (943)
                      ++++|...+..|..+..+++|++|++++|......|..+..+++|++|++++|+..
T Consensus       111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            77777766666677777777777777776644333444445566777777766643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.36  E-value=1.3e-12  Score=124.45  Aligned_cols=127  Identities=24%  Similarity=0.174  Sum_probs=97.7

Q ss_pred             cccccEEeecccCCCCCCcch-hccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccc-cchhhhhcc
Q 002284           58 IQHLRTLLPVTLLSSRPGYLA-RSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRT-LPESVNKLY  135 (943)
Q Consensus        58 ~~~Lr~L~~~~~~~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~-lp~~i~~L~  135 (943)
                      .++|++|.+.++      .+. +.+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. +|..++.++
T Consensus        23 ~~~L~~L~l~~n------~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   95 (168)
T 2ell_A           23 PAAVRELVLDNC------KSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP   95 (168)
T ss_dssp             TTSCSEEECCSC------BCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred             cccCCEEECCCC------CCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence            467788866443      444 46666656888899999998888887 778888899999999998887 677777888


Q ss_pred             ccceeecCCCccccccc--HHHhccccCceEEcCCCCCCccccc----cccccccccccCceEe
Q 002284          136 NLHTLLLEGCRELKKKC--ADMGNLIKLHHLNNSNTDSLEEMPL----GIGKLTCLLTLCNFVV  193 (943)
Q Consensus       136 ~L~~L~L~~n~~~~~~p--~~~~~L~~L~~L~l~~n~~~~~~p~----~~~~L~~L~~L~~~~~  193 (943)
                      +|++|++++|. +..+|  ..++.+++|++|++++|. +..+|.    .+..+++|+.|+...+
T Consensus        96 ~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           96 NLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             TCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             CCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence            99999999886 44444  678888899999998888 666665    5788888888865444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.36  E-value=1.6e-14  Score=165.00  Aligned_cols=69  Identities=19%  Similarity=0.028  Sum_probs=47.4

Q ss_pred             cCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEcCCCCCCcccccccccccccccc
Q 002284          109 GDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTL  188 (943)
Q Consensus       109 ~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L  188 (943)
                      ...++|+.|+|++|+++.||++|+++++|+.|++++|.....+|..+..+           ...+..|..++.+++|+.|
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~-----------~~~~~~~~~l~~l~~L~~L  414 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRAL-----------DPLLYEKETLQYFSTLKAV  414 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----------CTGGGHHHHHHHHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhc-----------ccccCCHHHHHHHHhcccC
Confidence            67889999999999999999999999999999998764333333222111           1134445556666666655

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.35  E-value=2e-12  Score=128.07  Aligned_cols=147  Identities=16%  Similarity=0.065  Sum_probs=99.6

Q ss_pred             CcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcC-Cccccccce
Q 002284          676 LPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEG-GLLSAKLKR  754 (943)
Q Consensus       676 lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~-~~~l~~L~~  754 (943)
                      +++++++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. ++.+|.. +..+++|++
T Consensus        26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  104 (208)
T 2o6s_A           26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKE  104 (208)
T ss_dssp             CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCE
Confidence            34678888888876554444456778888888888887776555566778888888888874 4455543 456778888


Q ss_pred             eeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCC-CCCCCCcceEEecCCcchhccccccCCCCCCCccEEEecC
Q 002284          755 LVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTED-GLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISG  833 (943)
Q Consensus       755 L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~  833 (943)
                      |++++|...+..+..+..+++|++|++++|. +..++.. +..+++|++|++++|+.         ...+++|++|+++.
T Consensus       105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~---------~~~~~~l~~L~~~~  174 (208)
T 2o6s_A          105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPW---------DCTCPGIRYLSEWI  174 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB---------CCCTTTTHHHHHHH
T ss_pred             EEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCe---------ecCCCCHHHHHHHH
Confidence            8888877554444456778888888888775 4445444 34467777777777753         23456667776666

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.35  E-value=2.5e-12  Score=132.18  Aligned_cols=96  Identities=24%  Similarity=0.260  Sum_probs=53.2

Q ss_pred             hccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEE
Q 002284           86 LKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLN  165 (943)
Q Consensus        86 ~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~  165 (943)
                      ..+++|++|++++|.++.+| .+..+++|++|+|++|.|+.+|. ++++++|++|++++|. +..+|. +.. ++|++|+
T Consensus        38 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~-~~~-~~L~~L~  112 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNG-IPS-ACLSRLF  112 (263)
T ss_dssp             HHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTT-CCC-SSCCEEE
T ss_pred             hhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCc-ccc-CcccEEE
Confidence            35566666666666666555 45566666666666666666654 5666666666666654 333332 222 5666666


Q ss_pred             cCCCCCCcccccccccccccccc
Q 002284          166 NSNTDSLEEMPLGIGKLTCLLTL  188 (943)
Q Consensus       166 l~~n~~~~~~p~~~~~L~~L~~L  188 (943)
                      +++|. +..++ .++.+++|+.|
T Consensus       113 L~~N~-l~~~~-~l~~l~~L~~L  133 (263)
T 1xeu_A          113 LDNNE-LRDTD-SLIHLKNLEIL  133 (263)
T ss_dssp             CCSSC-CSBSG-GGTTCTTCCEE
T ss_pred             ccCCc-cCCCh-hhcCcccccEE
Confidence            66665 44443 35555555555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.34  E-value=4.7e-14  Score=161.09  Aligned_cols=175  Identities=15%  Similarity=0.083  Sum_probs=117.3

Q ss_pred             hccCcccEEEecCccccccCccccCCCCCceeecCCCc-------------cc-ccchhhhhccccceee-cCCCccccc
Q 002284           86 LKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQ-------------IR-TLPESVNKLYNLHTLL-LEGCRELKK  150 (943)
Q Consensus        86 ~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~-------------i~-~lp~~i~~L~~L~~L~-L~~n~~~~~  150 (943)
                      ...++|+.|+|++|.++.+|+.|+++++|+.|++++|.             +. .+|..++.+++|+.|+ ++.|. ...
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cch
Confidence            46899999999999999999999999999999998774             22 4467889999999998 66553 333


Q ss_pred             ccH------HHhcc--ccCceEEcCCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccc
Q 002284          151 KCA------DMGNL--IKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENV  222 (943)
Q Consensus       151 ~p~------~~~~L--~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~  222 (943)
                      ++.      .+..+  ..|++|++++|. +..+|. ++.+++|+.|+...+                        .+.  
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N------------------------~l~--  476 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHN------------------------RLR--  476 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSS------------------------CCC--
T ss_pred             hhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCcc------------------------ccc--
Confidence            332      12222  268899999998 666775 777777766622111                        111  


Q ss_pred             cCccchhhcccCCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEE
Q 002284          223 KYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTL  302 (943)
Q Consensus       223 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L  302 (943)
                           .++..+..+++|+.|++++|.+                                   ..+| .+.  .+++|++|
T Consensus       477 -----~lp~~~~~l~~L~~L~Ls~N~l-----------------------------------~~lp-~l~--~l~~L~~L  513 (567)
T 1dce_A          477 -----ALPPALAALRCLEVLQASDNAL-----------------------------------ENVD-GVA--NLPRLQEL  513 (567)
T ss_dssp             -----CCCGGGGGCTTCCEEECCSSCC-----------------------------------CCCG-GGT--TCSSCCEE
T ss_pred             -----ccchhhhcCCCCCEEECCCCCC-----------------------------------CCCc-ccC--CCCCCcEE
Confidence                 1112244455555555555544                                   4455 333  27777777


Q ss_pred             EEeCCCCCCCC-C-CCCCCCCCCeeEEecCcC
Q 002284          303 KFQDCSMCTSM-P-SVGQLPSLKHLEVRGMSR  332 (943)
Q Consensus       303 ~L~~n~~~~~~-~-~~~~l~~L~~L~L~~~~~  332 (943)
                      ++++|.+.+.. | .++.+++|+.|++++|+.
T Consensus       514 ~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             ECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence            77777777664 4 677777777787777763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.31  E-value=3.1e-12  Score=122.68  Aligned_cols=130  Identities=18%  Similarity=0.091  Sum_probs=106.1

Q ss_pred             ccccccccccEEeecccCCCCCCcchhccchhhhccC-cccEEEecCccccccCccccCCCCCceeecCCCcccccchh-
Q 002284           53 EDLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQ-RLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPES-  130 (943)
Q Consensus        53 ~~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~-~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~-  130 (943)
                      ..+.++++|+.|.+.++      .+. .+ +.+..+. +|++|++++|.++.+ ..|+.+++|++|+|++|.|+.+|.. 
T Consensus        13 ~~~~~~~~L~~L~l~~n------~l~-~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~   83 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGY------KIP-VI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL   83 (176)
T ss_dssp             CEEECTTSCEEEECTTS------CCC-SC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred             HhcCCcCCceEEEeeCC------CCc-hh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence            44567888999977554      333 44 4466544 999999999999988 6899999999999999999999754 


Q ss_pred             hhhccccceeecCCCcccccccH--HHhccccCceEEcCCCCCCcccccc----ccccccccccCceEe
Q 002284          131 VNKLYNLHTLLLEGCRELKKKCA--DMGNLIKLHHLNNSNTDSLEEMPLG----IGKLTCLLTLCNFVV  193 (943)
Q Consensus       131 i~~L~~L~~L~L~~n~~~~~~p~--~~~~L~~L~~L~l~~n~~~~~~p~~----~~~L~~L~~L~~~~~  193 (943)
                      ++.+++|++|++++|. ++.+|.  .++.+++|++|++++|. +..+|..    ++.+++|+.|+...+
T Consensus        84 ~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           84 DQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             HHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             hhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence            4999999999999996 577776  79999999999999999 6778875    888999998865444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.31  E-value=2.3e-12  Score=125.28  Aligned_cols=107  Identities=23%  Similarity=0.311  Sum_probs=71.1

Q ss_pred             ccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHhcc
Q 002284           80 SILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMGNL  158 (943)
Q Consensus        80 ~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L  158 (943)
                      .+|.+++  +.|++|++++|.++.+|..|.++++|++|+|++|.|+.++ ..|.++++|++|+|++|.+....|..|.++
T Consensus        24 ~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l  101 (193)
T 2wfh_A           24 VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL  101 (193)
T ss_dssp             SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred             cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCC
Confidence            4554443  4667777777777777767777777777777777777764 456777777777777776544445557777


Q ss_pred             ccCceEEcCCCCCCcccccc-ccccccccccC
Q 002284          159 IKLHHLNNSNTDSLEEMPLG-IGKLTCLLTLC  189 (943)
Q Consensus       159 ~~L~~L~l~~n~~~~~~p~~-~~~L~~L~~L~  189 (943)
                      ++|++|++++|. +..+|.+ |..+++|+.|+
T Consensus       102 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~  132 (193)
T 2wfh_A          102 KSLRLLSLHGND-ISVVPEGAFNDLSALSHLA  132 (193)
T ss_dssp             TTCCEEECCSSC-CCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCC-CCeeChhhhhcCccccEEE
Confidence            777777777776 5555553 66666666663

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.30  E-value=3.1e-12  Score=151.03  Aligned_cols=149  Identities=19%  Similarity=0.200  Sum_probs=95.7

Q ss_pred             CceeEEEEEeccCccccccccccccccccEEeecccCCCCCCcchhccchhhh-ccCcccEEEecCccccccCccccCCC
Q 002284           34 RNLHHLSYIRGDYDGVKRFEDLYDIQHLRTLLPVTLLSSRPGYLARSILPRLL-KLQRLRVFSLRGYLISEVPDSIGDLS  112 (943)
Q Consensus        34 ~~~~~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~lp~~~~~l~  112 (943)
                      .+++++++..+......  .......+|+.+.+.... +..|.+  .++++.+ .++.|++|+|++|.+..+|..+..++
T Consensus       173 ~~~~~l~L~~n~~~~~~--~~~l~~l~Ls~~~i~~~~-~~~n~~--~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~  247 (727)
T 4b8c_D          173 PLTPKIELFANGKDEAN--QALLQHKKLSQYSIDEDD-DIENRM--VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYD  247 (727)
T ss_dssp             ------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCC
T ss_pred             CccceEEeeCCCCCcch--hhHhhcCccCcccccCcc-ccccce--ecChhhhccCCCCcEEECCCCCCCCCChhhcCCC
Confidence            45788888666544321  223344455555443321 123322  2455555 99999999999999999998899999


Q ss_pred             CCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEcCCCCCCccccccccccccccccC
Q 002284          113 YLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLC  189 (943)
Q Consensus       113 ~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L~  189 (943)
                      +|++|+|++|.|+.+|..|++|++|++|+|++|. +..+|..|++|++|++|+|++|. ++.+|.+|+.+++|++|+
T Consensus       248 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~  322 (727)
T 4b8c_D          248 FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLG  322 (727)
T ss_dssp             SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEE
T ss_pred             CCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEe
Confidence            9999999999999999999999999999999997 45889999999999999999998 789999999999999884

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.30  E-value=1.2e-11  Score=124.32  Aligned_cols=130  Identities=19%  Similarity=0.157  Sum_probs=67.2

Q ss_pred             cccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcC-Ccccccccee
Q 002284          677 PQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEG-GLLSAKLKRL  755 (943)
Q Consensus       677 p~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~-~~~l~~L~~L  755 (943)
                      |++|+.|++++|...+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|. ++.+|.. +..+++|+.|
T Consensus        39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeE
Confidence            3456666666655444444555555666666666655543333444555666666666653 3333332 3445556666


Q ss_pred             eeccccCCccCCCcCCCCCCCCceeecCCCCCccccCC-CCCCCCcceEEecCCc
Q 002284          756 VIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTED-GLFPTNLHSLEIDGMK  809 (943)
Q Consensus       756 ~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~  809 (943)
                      ++++|. +..+|..+..+++|++|++++|. +..++.. ...+++|+.|++++|+
T Consensus       118 ~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          118 FMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             ECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             eccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence            665554 33555555555555555555553 3333332 2233555555555554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.30  E-value=4.2e-12  Score=120.89  Aligned_cols=137  Identities=21%  Similarity=0.222  Sum_probs=111.3

Q ss_pred             ccCCceeEEEEEeccCc--cccccccccccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCccccc-cCcc
Q 002284           31 SFSRNLHHLSYIRGDYD--GVKRFEDLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISE-VPDS  107 (943)
Q Consensus        31 ~~~~~~~~ls~~~~~~~--~~~~~~~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~-lp~~  107 (943)
                      ..+.+++++.+..+.+.  .+.  ..+..+++|+.|.+.++      .+.. + ..+..+++|++|++++|.+.. +|..
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~--~~~~~l~~L~~L~l~~n------~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~   90 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIE--GLTAEFVNLEFLSLINV------GLIS-V-SNLPKLPKLKKLELSENRIFGGLDML   90 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCS--SCCGGGGGCCEEEEESS------CCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHH
T ss_pred             CCcccCCEEECCCCCCChhhHH--HHHHhCCCCCEEeCcCC------CCCC-h-hhhccCCCCCEEECcCCcCchHHHHH
Confidence            45688999999888765  322  23578899999988654      3333 3 555599999999999999988 6777


Q ss_pred             ccCCCCCceeecCCCcccccc--hhhhhccccceeecCCCccccccc---HHHhccccCceEEcCCCCCCcccccc
Q 002284          108 IGDLSYLRYLNLSGTQIRTLP--ESVNKLYNLHTLLLEGCRELKKKC---ADMGNLIKLHHLNNSNTDSLEEMPLG  178 (943)
Q Consensus       108 ~~~l~~L~~L~Ls~n~i~~lp--~~i~~L~~L~~L~L~~n~~~~~~p---~~~~~L~~L~~L~l~~n~~~~~~p~~  178 (943)
                      +..+++|++|++++|.|+.+|  ..++.+++|++|++++|.+.+..+   ..+..+++|++|++++|. ..++|.+
T Consensus        91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~  165 (168)
T 2ell_A           91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS  165 (168)
T ss_dssp             HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred             HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence            788999999999999999986  789999999999999997444433   379999999999999998 7777754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.29  E-value=2.7e-12  Score=124.92  Aligned_cols=84  Identities=20%  Similarity=0.235  Sum_probs=43.7

Q ss_pred             ccCcccEEEecCcccccc-CccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHhccccCceE
Q 002284           87 KLQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHL  164 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L  164 (943)
                      .+++|++|+|++|.++.+ |..|.++++|++|+|++|+|+.+| ..|+++++|++|++++|.+.+..|..|+.+++|++|
T Consensus        52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  131 (192)
T 1w8a_A           52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL  131 (192)
T ss_dssp             GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred             cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence            555555555555555544 444555555555555555555543 234555555555555554444444445555555555


Q ss_pred             EcCCCC
Q 002284          165 NNSNTD  170 (943)
Q Consensus       165 ~l~~n~  170 (943)
                      ++++|.
T Consensus       132 ~L~~N~  137 (192)
T 1w8a_A          132 NLASNP  137 (192)
T ss_dssp             ECTTCC
T ss_pred             EeCCCC
Confidence            555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.29  E-value=6.3e-12  Score=136.16  Aligned_cols=154  Identities=14%  Similarity=0.109  Sum_probs=115.4

Q ss_pred             CcccccEEEeecCCCchhhHhhhc-ccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCc-CCccccccc
Q 002284          676 LPQALKFLSIWHCSKLESIVERLD-NKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPE-GGLLSAKLK  753 (943)
Q Consensus       676 lp~~L~~L~l~~~~~l~~~~~~~~-~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~-~~~~l~~L~  753 (943)
                      +|..++.|++++|...+..+..+. ++++|+.|++++|.+.+..+..|.++++|++|+|++|. +..++. .+..+++|+
T Consensus        37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~  115 (361)
T 2xot_A           37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALE  115 (361)
T ss_dssp             CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred             CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCC
Confidence            446788899988765554445566 88999999999998888777788899999999999985 455554 466788999


Q ss_pred             eeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCC----CCCCCcceEEecCCcchhccccccCCCCCCC--cc
Q 002284          754 RLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDG----LFPTNLHSLEIDGMKIWKSLMQLGGFHRYTS--LR  827 (943)
Q Consensus       754 ~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~----~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~--L~  827 (943)
                      .|++++|...+..|..|..+++|++|++++|. +..+|...    ..+++|+.|++++|........  .+..++.  |+
T Consensus       116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~--~~~~l~~~~l~  192 (361)
T 2xot_A          116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT--DLQKLPAWVKN  192 (361)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCHH--HHHHSCHHHHT
T ss_pred             EEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH--HhhhccHhhcc
Confidence            99999988777667788899999999999876 55666654    2468888999988875543221  3455665  47


Q ss_pred             EEEecC
Q 002284          828 RLAISG  833 (943)
Q Consensus       828 ~L~l~~  833 (943)
                      .|++++
T Consensus       193 ~l~l~~  198 (361)
T 2xot_A          193 GLYLHN  198 (361)
T ss_dssp             TEECCS
T ss_pred             eEEecC
Confidence            788877

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.27  E-value=9.3e-13  Score=155.51  Aligned_cols=121  Identities=23%  Similarity=0.294  Sum_probs=105.8

Q ss_pred             cccccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhh
Q 002284           54 DLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNK  133 (943)
Q Consensus        54 ~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~  133 (943)
                      .+..++.|++|.+.++      .+ ..+|..++.+++|++|+|++|.++.+|.+|+++++|++|+|++|.|+.+|..|++
T Consensus       219 ~~~~l~~L~~L~Ls~n------~l-~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~  291 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNL------QI-FNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGS  291 (727)
T ss_dssp             ---CCCCCCEEECTTS------CC-SCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGG
T ss_pred             hhccCCCCcEEECCCC------CC-CCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcC
Confidence            4567889999977544      44 4789999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceeecCCCcccccccHHHhccccCceEEcCCCCCCcccccccccc
Q 002284          134 LYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKL  182 (943)
Q Consensus       134 L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~~p~~~~~L  182 (943)
                      |++|++|+|++|. ++.+|..|++|++|++|++++|.+.+.+|..++.+
T Consensus       292 l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~  339 (727)
T 4b8c_D          292 CFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK  339 (727)
T ss_dssp             GTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred             CCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence            9999999999996 67889999999999999999999666777666554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.25  E-value=1.5e-11  Score=131.37  Aligned_cols=290  Identities=14%  Similarity=0.107  Sum_probs=158.9

Q ss_pred             ccccccEEeecccCCCCCCcchhccchhhhc-cCcccEEEecCccccccCccccCCCCCceeecCCCcccccc-hhhhh-
Q 002284           57 DIQHLRTLLPVTLLSSRPGYLARSILPRLLK-LQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLP-ESVNK-  133 (943)
Q Consensus        57 ~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~-l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~-  133 (943)
                      .+.+++.|.+.+.-       ...-...+.. +++|++|||++|.+......-+.++.++++.+..|   .|| .+|.+ 
T Consensus        23 ~~~~l~~L~l~g~i-------~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~   92 (329)
T 3sb4_A           23 EANSITHLTLTGKL-------NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNV   92 (329)
T ss_dssp             HHHHCSEEEEEEEE-------CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEE
T ss_pred             hhCceeEEEEeccc-------cHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhccc
Confidence            35567777664421       1222233333 78899999999998832111123333566666665   454 46777 


Q ss_pred             -------ccccceeecCCCccccccc-HHHhccccCceEEcCCCCCCcccccc-ccccccccccCceEeccCCCCCcccc
Q 002284          134 -------LYNLHTLLLEGCRELKKKC-ADMGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLLTLCNFVVGKDSGSGLREL  204 (943)
Q Consensus       134 -------L~~L~~L~L~~n~~~~~~p-~~~~~L~~L~~L~l~~n~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l  204 (943)
                             +++|+.|++.+ . +..++ ..|.++++|+.+++.+|. +..++.. |....++..+.......     ....
T Consensus        93 ~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~-----~~~~  164 (329)
T 3sb4_A           93 VNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDA-----YRFK  164 (329)
T ss_dssp             ETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHH-----HHTS
T ss_pred             ccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhh-----hhcc
Confidence                   89999999988 4 44444 459999999999999888 5555544 76666555552111000     0000


Q ss_pred             cCcccccCceeecccccccCccchhhcccCCCCCCC-eEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeC
Q 002284          205 KLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLK-VLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFG  283 (943)
Q Consensus       205 ~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~  283 (943)
                      ..+                     -...+.++..|+ .+.+....          ..............++..+.+.+.-
T Consensus       165 ~~i---------------------~~~~f~~~~~L~~~i~~~~~~----------~l~~~~~~~~~~~~~~~~l~~~~~l  213 (329)
T 3sb4_A          165 NRW---------------------EHFAFIEGEPLETTIQVGAMG----------KLEDEIMKAGLQPRDINFLTIEGKL  213 (329)
T ss_dssp             TTT---------------------TTSCEEESCCCEEEEEECTTC----------CHHHHHHHTTCCGGGCSEEEEEECC
T ss_pred             ccc---------------------cccccccccccceeEEecCCC----------cHHHHHhhcccCccccceEEEeeee
Confidence            000                     000122222333 12221000          0111111222223344555554431


Q ss_pred             CCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcc-eeeccccc
Q 002284          284 GKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLE-TLHFAEMQ  361 (943)
Q Consensus       284 ~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~  361 (943)
                      ...-...+. ..+++|+++++.+|.+....+ .|.++++|+.+++.+|  +..++...+..     +++|+ .+.+.+  
T Consensus       214 ~~~~~~~l~-~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~-----~~~L~~~l~l~~--  283 (329)
T 3sb4_A          214 DNADFKLIR-DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSN-----CGRLAGTLELPA--  283 (329)
T ss_dssp             CHHHHHHHH-HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-----CTTCCEEEEECT--
T ss_pred             cHHHHHHHH-HhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhC-----ChhccEEEEEcc--
Confidence            110000000 125678888888877765555 7888888888888876  55555444333     77787 777766  


Q ss_pred             ccccccccccCCccccCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEE
Q 002284          362 EWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLR  421 (943)
Q Consensus       362 ~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~  421 (943)
                      .++.+    -+..|..+++|+++++++ ++++ .++...          |.++++|+.++
T Consensus       284 ~l~~I----~~~aF~~c~~L~~l~l~~-n~i~-~I~~~a----------F~~~~~L~~ly  327 (329)
T 3sb4_A          284 SVTAI----EFGAFMGCDNLRYVLATG-DKIT-TLGDEL----------FGNGVPSKLIY  327 (329)
T ss_dssp             TCCEE----CTTTTTTCTTEEEEEECS-SCCC-EECTTT----------TCTTCCCCEEE
T ss_pred             cceEE----chhhhhCCccCCEEEeCC-CccC-ccchhh----------hcCCcchhhhc
Confidence            23332    245677888999999887 6777 666544          66777777665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.24  E-value=1.4e-11  Score=119.69  Aligned_cols=95  Identities=21%  Similarity=0.221  Sum_probs=83.8

Q ss_pred             cEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEcCCCCC
Q 002284           92 RVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDS  171 (943)
Q Consensus        92 ~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~  171 (943)
                      ++++++++.++.+|..+.  .+|++|++++|.|+.+|..|.++++|++|++++|.+.+..|..|.++++|++|++++|. 
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-
Confidence            689999999999998765  68999999999999999999999999999999998666666779999999999999999 


Q ss_pred             Cccccc-cccccccccccC
Q 002284          172 LEEMPL-GIGKLTCLLTLC  189 (943)
Q Consensus       172 ~~~~p~-~~~~L~~L~~L~  189 (943)
                      +..+|. .|+.+++|+.|+
T Consensus        90 l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEE
T ss_pred             cCEeCHHHhCCCCCCCEEE
Confidence            555554 588888888883

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.23  E-value=7.6e-12  Score=116.34  Aligned_cols=101  Identities=18%  Similarity=0.191  Sum_probs=90.9

Q ss_pred             ccCcccEEEecCcccc--ccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceE
Q 002284           87 KLQRLRVFSLRGYLIS--EVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHL  164 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~--~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L  164 (943)
                      ..++|++|++++|.++  .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.+.+|..++.+++|++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            5689999999999998  8899999999999999999999998 789999999999999998666688889999999999


Q ss_pred             EcCCCCCCcccc--ccccccccccccC
Q 002284          165 NNSNTDSLEEMP--LGIGKLTCLLTLC  189 (943)
Q Consensus       165 ~l~~n~~~~~~p--~~~~~L~~L~~L~  189 (943)
                      ++++|. +..+|  ..++.+++|++|+
T Consensus        94 ~ls~N~-i~~~~~~~~~~~l~~L~~L~  119 (149)
T 2je0_A           94 NLSGNK-IKDLSTIEPLKKLENLKSLD  119 (149)
T ss_dssp             ECTTSC-CCSHHHHGGGGGCTTCCEEE
T ss_pred             ECCCCc-CCChHHHHHHhhCCCCCEEe
Confidence            999999 66654  6788888888884

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.23  E-value=1.3e-11  Score=120.14  Aligned_cols=108  Identities=19%  Similarity=0.188  Sum_probs=73.9

Q ss_pred             hccchhhhccCcccEEEecCccccccCc--cccCCCCCceeecCCCccccc-chhhhhccccceeecCCCcccccccHHH
Q 002284           79 RSILPRLLKLQRLRVFSLRGYLISEVPD--SIGDLSYLRYLNLSGTQIRTL-PESVNKLYNLHTLLLEGCRELKKKCADM  155 (943)
Q Consensus        79 ~~~~~~~~~l~~L~~L~L~~n~i~~lp~--~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p~~~  155 (943)
                      +.+|..++.  ++++|++++|.++.++.  .|+.+++|++|+|++|.|+.+ |..|+++++|++|+|++|.+.+..|..|
T Consensus        21 ~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~   98 (192)
T 1w8a_A           21 KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMF   98 (192)
T ss_dssp             SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSS
T ss_pred             CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHh
Confidence            456665543  77777777777777754  367777778888877777777 5677777777788877776555555557


Q ss_pred             hccccCceEEcCCCCCCcccccccccccccccc
Q 002284          156 GNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTL  188 (943)
Q Consensus       156 ~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L  188 (943)
                      +++++|++|++++|.+.+..|..++.+++|++|
T Consensus        99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  131 (192)
T 1w8a_A           99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL  131 (192)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred             cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence            777777777777777444445555555555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.19  E-value=1.2e-10  Score=124.33  Aligned_cols=110  Identities=14%  Similarity=0.116  Sum_probs=58.8

Q ss_pred             ccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcC-Cccccccc-ee
Q 002284          678 QALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEG-GLLSAKLK-RL  755 (943)
Q Consensus       678 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~-~~~l~~L~-~L  755 (943)
                      .++..+.+.+.-...........+++|+.+++++|.....-+..|.++++|+++++.+|  +..++.. +..+++|+ .+
T Consensus       202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l  279 (329)
T 3sb4_A          202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTL  279 (329)
T ss_dssp             GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEE
T ss_pred             cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEE
Confidence            45666666664322222222233666666666666554444455666666666666665  5555543 44466666 66


Q ss_pred             eeccccCCccC-CCcCCCCCCCCceeecCCCCCccccC
Q 002284          756 VIYGCKKLEAL-PEGMHNLSSLQYLTIGGVPSLLCFTE  792 (943)
Q Consensus       756 ~l~~~~~l~~~-p~~~~~l~~L~~L~l~~~~~l~~~~~  792 (943)
                      ++.+ . +..+ +..|.++++|+.++++++. +..++.
T Consensus       280 ~l~~-~-l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~  314 (329)
T 3sb4_A          280 ELPA-S-VTAIEFGAFMGCDNLRYVLATGDK-ITTLGD  314 (329)
T ss_dssp             EECT-T-CCEECTTTTTTCTTEEEEEECSSC-CCEECT
T ss_pred             EEcc-c-ceEEchhhhhCCccCCEEEeCCCc-cCccch
Confidence            6655 2 3333 3455666666666665433 344433

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.17  E-value=1.7e-11  Score=117.48  Aligned_cols=102  Identities=27%  Similarity=0.348  Sum_probs=86.4

Q ss_pred             hhhccCcccEEEecCccccccCccccCCC-CCceeecCCCcccccchhhhhccccceeecCCCcccccccH-HHhccccC
Q 002284           84 RLLKLQRLRVFSLRGYLISEVPDSIGDLS-YLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCA-DMGNLIKL  161 (943)
Q Consensus        84 ~~~~l~~L~~L~L~~n~i~~lp~~~~~l~-~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~-~~~~L~~L  161 (943)
                      .+..+.+|++|++++|.++.+|. +..+. +|++|++++|.|+.+ ..++.+++|++|++++|.+. .+|. .++.+++|
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L   90 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL   90 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred             hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence            34488999999999999999865 55555 999999999999998 68999999999999999754 5554 46999999


Q ss_pred             ceEEcCCCCCCccccc--cccccccccccC
Q 002284          162 HHLNNSNTDSLEEMPL--GIGKLTCLLTLC  189 (943)
Q Consensus       162 ~~L~l~~n~~~~~~p~--~~~~L~~L~~L~  189 (943)
                      ++|++++|. ++.+|.  .++.+++|+.|+
T Consensus        91 ~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           91 TELILTNNS-LVELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CEEECCSCC-CCCGGGGGGGGGCTTCCEEE
T ss_pred             CEEECCCCc-CCcchhhHhhhcCCCCCEEE
Confidence            999999999 788886  677788887773

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.16  E-value=9.1e-13  Score=129.25  Aligned_cols=103  Identities=19%  Similarity=0.222  Sum_probs=80.7

Q ss_pred             chhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccC
Q 002284           82 LPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKL  161 (943)
Q Consensus        82 ~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L  161 (943)
                      |..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++|. +..+| .++.+++|
T Consensus        41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L  117 (198)
T 1ds9_A           41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNL  117 (198)
T ss_dssp             HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHS
T ss_pred             hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCC
Confidence            336668888888888888888888 7888888888888888888888888888888888888885 44455 68888888


Q ss_pred             ceEEcCCCCCCccccc--ccccccccccc
Q 002284          162 HHLNNSNTDSLEEMPL--GIGKLTCLLTL  188 (943)
Q Consensus       162 ~~L~l~~n~~~~~~p~--~~~~L~~L~~L  188 (943)
                      ++|++++|. +..+|.  .++.+++|++|
T Consensus       118 ~~L~l~~N~-i~~~~~~~~l~~l~~L~~L  145 (198)
T 1ds9_A          118 RVLYMSNNK-ITNWGEIDKLAALDKLEDL  145 (198)
T ss_dssp             SEEEESEEE-CCCHHHHHHHTTTTTCSEE
T ss_pred             CEEECCCCc-CCchhHHHHHhcCCCCCEE
Confidence            888888887 555543  46666666655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.13  E-value=6.8e-11  Score=112.56  Aligned_cols=102  Identities=21%  Similarity=0.206  Sum_probs=83.3

Q ss_pred             hhccchhhhccCcccEEEecCcccccc-CccccCCCCCceeecCCCcccccch-hhhhccccceeecCCCcccccccH-H
Q 002284           78 ARSILPRLLKLQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTLPE-SVNKLYNLHTLLLEGCRELKKKCA-D  154 (943)
Q Consensus        78 ~~~~~~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~n~~~~~~p~-~  154 (943)
                      .+.+|..+.  ++|++|+|++|.++.+ |..|.++++|++|+|++|+|+.+|. .|.++++|++|+|++|.+ ..+|. .
T Consensus        24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l-~~l~~~~  100 (174)
T 2r9u_A           24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL-KSIPRGA  100 (174)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTT
T ss_pred             CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc-ceeCHHH
Confidence            356777665  8899999999999988 6788999999999999999999975 468999999999999974 45554 4


Q ss_pred             HhccccCceEEcCCCCCCccccccccccc
Q 002284          155 MGNLIKLHHLNNSNTDSLEEMPLGIGKLT  183 (943)
Q Consensus       155 ~~~L~~L~~L~l~~n~~~~~~p~~~~~L~  183 (943)
                      |..+++|++|++++|. +...+..+..+.
T Consensus       101 ~~~l~~L~~L~L~~N~-~~c~~~~~~~l~  128 (174)
T 2r9u_A          101 FDNLKSLTHIYLYNNP-WDCECRDIMYLR  128 (174)
T ss_dssp             TTTCTTCSEEECCSSC-BCTTBGGGHHHH
T ss_pred             hccccCCCEEEeCCCC-cccccccHHHHH
Confidence            9999999999999998 666665444443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.10  E-value=1.3e-10  Score=111.46  Aligned_cols=89  Identities=24%  Similarity=0.324  Sum_probs=49.3

Q ss_pred             cchhhh-ccCcccEEEecCccccccCc-cccCCCCCceeecCCCcccccch-hhhhccccceeecCCCcccccccHH-Hh
Q 002284           81 ILPRLL-KLQRLRVFSLRGYLISEVPD-SIGDLSYLRYLNLSGTQIRTLPE-SVNKLYNLHTLLLEGCRELKKKCAD-MG  156 (943)
Q Consensus        81 ~~~~~~-~l~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~n~~~~~~p~~-~~  156 (943)
                      +++..+ .+++|++|++++|.++.+|. .|..+++|++|++++|.|+.+|. .++.+++|++|++++|.+. .+|.. +.
T Consensus        43 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~  121 (177)
T 2o6r_A           43 LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFD  121 (177)
T ss_dssp             CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTT
T ss_pred             eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhc
Confidence            344433 56666666666666655543 34566666666666666665543 3455666666666665433 33332 45


Q ss_pred             ccccCceEEcCCCC
Q 002284          157 NLIKLHHLNNSNTD  170 (943)
Q Consensus       157 ~L~~L~~L~l~~n~  170 (943)
                      .+++|++|++++|.
T Consensus       122 ~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          122 RLTSLQKIWLHTNP  135 (177)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             CCcccCEEEecCCC
Confidence            56666666666665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.08  E-value=1.4e-10  Score=110.00  Aligned_cols=90  Identities=24%  Similarity=0.291  Sum_probs=74.0

Q ss_pred             hccchhhhccCcccEEEecCcccccc-CccccCCCCCceeecCCCcccccch-hhhhccccceeecCCCcccccccHHHh
Q 002284           79 RSILPRLLKLQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTLPE-SVNKLYNLHTLLLEGCRELKKKCADMG  156 (943)
Q Consensus        79 ~~~~~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~n~~~~~~p~~~~  156 (943)
                      ..+|..++  +.|++|+|++|.++.+ |..|.++++|++|+|++|+|+.+|. .|.++++|++|+|++|.+.+..|..|.
T Consensus        22 ~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~   99 (170)
T 3g39_A           22 ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD   99 (170)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhc
Confidence            45666654  7889999999999888 6778999999999999999998865 568999999999999875444444588


Q ss_pred             ccccCceEEcCCCC
Q 002284          157 NLIKLHHLNNSNTD  170 (943)
Q Consensus       157 ~L~~L~~L~l~~n~  170 (943)
                      ++++|++|++++|.
T Consensus       100 ~l~~L~~L~L~~N~  113 (170)
T 3g39_A          100 NLKSLTHIWLLNNP  113 (170)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             CCCCCCEEEeCCCC
Confidence            99999999999998

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.07  E-value=6.2e-12  Score=123.25  Aligned_cols=126  Identities=23%  Similarity=0.257  Sum_probs=104.1

Q ss_pred             cccccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhh
Q 002284           54 DLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNK  133 (943)
Q Consensus        54 ~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~  133 (943)
                      .+..+++|++|.+.++      .+.. +| .+..+++|++|++++|.++.+|..+..+++|++|++++|+++.+| .++.
T Consensus        43 ~~~~l~~L~~L~ls~n------~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~  113 (198)
T 1ds9_A           43 TLSTLKACKHLALSTN------NIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK  113 (198)
T ss_dssp             HHHHTTTCSEEECSEE------EESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred             HHhcCCCCCEEECCCC------CCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence            5678899999987543      4443 66 666999999999999999999998888999999999999999997 6999


Q ss_pred             ccccceeecCCCccccccc--HHHhccccCceEEcCCCCCCcccccc----------ccccccccccC
Q 002284          134 LYNLHTLLLEGCRELKKKC--ADMGNLIKLHHLNNSNTDSLEEMPLG----------IGKLTCLLTLC  189 (943)
Q Consensus       134 L~~L~~L~L~~n~~~~~~p--~~~~~L~~L~~L~l~~n~~~~~~p~~----------~~~L~~L~~L~  189 (943)
                      +++|++|++++|. +..+|  ..+..+++|++|++++|.+.+..|..          +..+++|+.|+
T Consensus       114 l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          114 LVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            9999999999996 44444  46999999999999999844444432          67788888774

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.06  E-value=1.4e-10  Score=109.97  Aligned_cols=101  Identities=22%  Similarity=0.285  Sum_probs=86.2

Q ss_pred             cccEEEecCccccccCccccCCCCCceeecCCCccccc-chhhhhccccceeecCCCcccccccHHHhccccCceEEcCC
Q 002284           90 RLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTL-PESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSN  168 (943)
Q Consensus        90 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~  168 (943)
                      ..+++++++|.++.+|..+.  ++|++|+|++|+|+.+ |..|+++++|++|+|++|.+.+..|..|.++++|++|++++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            35789999999999998774  8999999999999999 57899999999999999975554445589999999999999


Q ss_pred             CCCCcccccc-ccccccccccCceEe
Q 002284          169 TDSLEEMPLG-IGKLTCLLTLCNFVV  193 (943)
Q Consensus       169 n~~~~~~p~~-~~~L~~L~~L~~~~~  193 (943)
                      |. +..+|.+ |+.+++|+.|+...+
T Consensus        88 N~-l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           88 NQ-LKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             SC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             Cc-cCEeCHHHhcCCCCCCEEEeCCC
Confidence            99 6777765 899999998854433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.05  E-value=1.7e-10  Score=109.86  Aligned_cols=98  Identities=21%  Similarity=0.331  Sum_probs=85.1

Q ss_pred             cEEEecCccccccCccccCCCCCceeecCCCccccc-chhhhhccccceeecCCCcccccccH-HHhccccCceEEcCCC
Q 002284           92 RVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTL-PESVNKLYNLHTLLLEGCRELKKKCA-DMGNLIKLHHLNNSNT  169 (943)
Q Consensus        92 ~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p~-~~~~L~~L~~L~l~~n  169 (943)
                      +++++++|.++.+|..+.  ++|++|+|++|+|+.+ |..|+++++|++|+|++|.+ ..+|. .|+++++|++|++++|
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC-CccChhHhCCcchhhEEECCCC
Confidence            789999999999998775  8999999999999999 57899999999999999974 45555 4799999999999999


Q ss_pred             CCCcccccc-ccccccccccCceEe
Q 002284          170 DSLEEMPLG-IGKLTCLLTLCNFVV  193 (943)
Q Consensus       170 ~~~~~~p~~-~~~L~~L~~L~~~~~  193 (943)
                      . +..+|.+ |+.+++|+.|+...+
T Consensus        92 ~-l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           92 H-LKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             C-CCCCCTTTTTTCTTCSEEECCSS
T ss_pred             c-cceeCHHHhccccCCCEEEeCCC
Confidence            9 7777776 899999998854433

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.03  E-value=1.2e-08  Score=110.89  Aligned_cols=235  Identities=10%  Similarity=0.115  Sum_probs=118.9

Q ss_pred             CCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccC
Q 002284          459 PKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLS  538 (943)
Q Consensus       459 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  538 (943)
                      ..++.+.+.      +.+..++...|.+. +|+.+.+..+  ++.+....   |.+ .+|+.+.+.+ .....-+.+|.+
T Consensus       113 ~~l~~i~ip------~~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~a---F~~-~~L~~i~lp~-~l~~I~~~aF~~  178 (401)
T 4fdw_A          113 KGYNEIILP------NSVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMA---FFN-STVQEIVFPS-TLEQLKEDIFYY  178 (401)
T ss_dssp             SSCSEEECC------TTCCEECTTTTTTC-CCSEEECCTT--CCEECTTT---TTT-CCCCEEECCT-TCCEECSSTTTT
T ss_pred             CCccEEEEC------CccCEehHhhcccC-CccEEEeCCC--ccEECHHh---cCC-CCceEEEeCC-CccEehHHHhhC
Confidence            445555444      34455555666664 5777776654  66666554   555 3577777765 233333346677


Q ss_pred             CCCcCeeeccCCCCCcccCCCCC-CCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCcCCCCCCceE
Q 002284          539 LSSLTEMRIHNCSSLVSFPEAVL-PSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQL  617 (943)
Q Consensus       539 l~~L~~L~L~~n~~l~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L  617 (943)
                      +++|+.+++.+|. +..++...+ ..+|+.+.+..+  +..++... +.++++|+.+++..+  ++.++...+       
T Consensus       179 c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~a-F~~~~~L~~l~l~~~--l~~I~~~aF-------  245 (401)
T 4fdw_A          179 CYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQA-FLKTSQLKTIEIPEN--VSTIGQEAF-------  245 (401)
T ss_dssp             CTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTT-TTTCTTCCCEECCTT--CCEECTTTT-------
T ss_pred             cccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehhhH-hhCCCCCCEEecCCC--ccCcccccc-------
Confidence            7777777777664 444444333 345555555432  33333222 334555555555432  111111100       


Q ss_pred             EeccCcCccccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhh-Hh
Q 002284          618 EIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESI-VE  696 (943)
Q Consensus       618 ~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~-~~  696 (943)
                                                                              ..  .+|+.+.+.+  .++.+ ..
T Consensus       246 --------------------------------------------------------~~--~~L~~i~lp~--~i~~I~~~  265 (401)
T 4fdw_A          246 --------------------------------------------------------RE--SGITTVKLPN--GVTNIASR  265 (401)
T ss_dssp             --------------------------------------------------------TT--CCCSEEEEET--TCCEECTT
T ss_pred             --------------------------------------------------------cc--CCccEEEeCC--CccEEChh
Confidence                                                                    00  1344444422  12222 23


Q ss_pred             hhcccccccEEEeeccCCc-----ccccccccCCCCccEEeccCCCCCcccCcC-CccccccceeeeccccCCccC-CCc
Q 002284          697 RLDNKISLEVIEIVSCENL-----KMLPHGLHKLWHLQEIDIQDCENLVSFPEG-GLLSAKLKRLVIYGCKKLEAL-PEG  769 (943)
Q Consensus       697 ~~~~l~~L~~L~l~~~~~~-----~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~-~~~l~~L~~L~l~~~~~l~~~-p~~  769 (943)
                      .|.++++|+.+++.++...     ..-+..|.++++|+.+++.+  .+..++.. +..+++|+.+++..+  +..+ +..
T Consensus       266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~a  341 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSA  341 (401)
T ss_dssp             TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEECTTS
T ss_pred             HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHh
Confidence            4556666666666555432     22245566677777777764  25555543 344566666666443  3333 335


Q ss_pred             CCCCCCCCceeecCCC
Q 002284          770 MHNLSSLQYLTIGGVP  785 (943)
Q Consensus       770 ~~~l~~L~~L~l~~~~  785 (943)
                      |.++ +|+.+++.++.
T Consensus       342 F~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          342 FNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             SSSS-CCCEEEECCSS
T ss_pred             CCCC-CCCEEEEcCCC
Confidence            5666 66666666653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.95  E-value=2.1e-09  Score=102.99  Aligned_cols=108  Identities=18%  Similarity=0.089  Sum_probs=55.3

Q ss_pred             ccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcC-CccccccceeeeccccCCccCCCcCCCCCCCCcee
Q 002284          702 ISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEG-GLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLT  780 (943)
Q Consensus       702 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~  780 (943)
                      ++|+.|++++|.+.+..+..+..+++|++|++++|. ++.+|.. +..+++|+.|++++|...+..+..+..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            345555555555444334444555666666666553 3333332 34455666666666554433333445566666666


Q ss_pred             ecCCCCCccccCCC-CCCCCcceEEecCCcch
Q 002284          781 IGGVPSLLCFTEDG-LFPTNLHSLEIDGMKIW  811 (943)
Q Consensus       781 l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~~l  811 (943)
                      +++|. ++.++... ..+++|++|++++|+..
T Consensus       107 l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          107 LDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence            66553 33444433 23456666666666543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.90  E-value=5.3e-08  Score=106.63  Aligned_cols=111  Identities=15%  Similarity=0.084  Sum_probs=59.8

Q ss_pred             cchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccC
Q 002284          478 QNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFP  557 (943)
Q Consensus       478 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~  557 (943)
                      .+....|.++++|+.+.+.+.  +..+....   |.++.+|+.+.+..+ ....-..+|..+..|+.+.+..+.  ..+.
T Consensus       152 ~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~---F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~~i~  223 (394)
T 4fs7_A          152 VIGDEAFATCESLEYVSLPDS--METLHNGL---FSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--YYLG  223 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCTT--CCEECTTT---TTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEEC
T ss_pred             ccchhhhcccCCCcEEecCCc--cceecccc---ccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc--eEee
Confidence            344556677777777777643  44555544   777777777777654 222233466677777777666542  2222


Q ss_pred             CCCC-CCCccEEEEecCCCCCcCccccccCCCCCccEEEeecC
Q 002284          558 EAVL-PSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHC  599 (943)
Q Consensus       558 ~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n  599 (943)
                      ...+ ...|+.+.+....  ..+.... +.++..|+.+.+..+
T Consensus       224 ~~~~~~~~l~~i~ip~~~--~~i~~~~-f~~~~~l~~~~~~~~  263 (394)
T 4fs7_A          224 DFALSKTGVKNIIIPDSF--TELGKSV-FYGCTDLESISIQNN  263 (394)
T ss_dssp             TTTTTTCCCCEEEECTTC--CEECSST-TTTCSSCCEEEECCT
T ss_pred             hhhcccCCCceEEECCCc--eeccccc-ccccccceeEEcCCC
Confidence            2222 3556666654322  2222221 345666666666544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.89  E-value=2.5e-08  Score=109.31  Aligned_cols=83  Identities=7%  Similarity=0.066  Sum_probs=47.7

Q ss_pred             ccCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchh
Q 002284          456 LQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKS  535 (943)
Q Consensus       456 ~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  535 (943)
                      ....+|+.+.+.      .++..+....|.++.+|+.+.+.+.  ++.+....   |.++.+|+.+.+..+ ....-..+
T Consensus       294 ~~~~~L~~i~l~------~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~a---F~~c~~L~~i~lp~~-l~~I~~~a  361 (394)
T 4fs7_A          294 YGCSSLTEVKLL------DSVKFIGEEAFESCTSLVSIDLPYL--VEEIGKRS---FRGCTSLSNINFPLS-LRKIGANA  361 (394)
T ss_dssp             TTCTTCCEEEEC------TTCCEECTTTTTTCTTCCEECCCTT--CCEECTTT---TTTCTTCCEECCCTT-CCEECTTT
T ss_pred             cccccccccccc------cccceechhhhcCCCCCCEEEeCCc--ccEEhHHh---ccCCCCCCEEEECcc-ccEehHHH
Confidence            345555555554      2344555566666667776666532  55555544   666677777766554 22222346


Q ss_pred             ccCCCCcCeeeccCC
Q 002284          536 LLSLSSLTEMRIHNC  550 (943)
Q Consensus       536 ~~~l~~L~~L~L~~n  550 (943)
                      |.++++|+.+++..+
T Consensus       362 F~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          362 FQGCINLKKVELPKR  376 (394)
T ss_dssp             BTTCTTCCEEEEEGG
T ss_pred             hhCCCCCCEEEECCC
Confidence            666777777776543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.87  E-value=3.8e-08  Score=107.09  Aligned_cols=256  Identities=12%  Similarity=0.090  Sum_probs=139.5

Q ss_pred             cccccEEeecccCCCCCCcchhccchhhh-ccCcccEEEecCccccccC-ccccCCCCCceeecCCCcccccc-hhhhhc
Q 002284           58 IQHLRTLLPVTLLSSRPGYLARSILPRLL-KLQRLRVFSLRGYLISEVP-DSIGDLSYLRYLNLSGTQIRTLP-ESVNKL  134 (943)
Q Consensus        58 ~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L  134 (943)
                      +..+.++.+-..        ...++...| + .+|+.+.+..+ ++.++ .+|.+. +|+.+.+.. .++.|+ .+|.++
T Consensus       112 ~~~l~~i~ip~~--------i~~I~~~aF~~-~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c  179 (401)
T 4fdw_A          112 LKGYNEIILPNS--------VKSIPKDAFRN-SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYC  179 (401)
T ss_dssp             CSSCSEEECCTT--------CCEECTTTTTT-CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTC
T ss_pred             cCCccEEEECCc--------cCEehHhhccc-CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCc
Confidence            455666655332        345666666 4 36777777655 66663 456663 677777775 677774 577777


Q ss_pred             cccceeecCCCcccccccHH-HhccccCceEEcCCCCCCcccccc-ccccccccccCceEeccCCCCCcccccCcccccC
Q 002284          135 YNLHTLLLEGCRELKKKCAD-MGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCG  212 (943)
Q Consensus       135 ~~L~~L~L~~n~~~~~~p~~-~~~L~~L~~L~l~~n~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~  212 (943)
                      .+|+.+++++|. +..+|.. |. ..+|+.+.+..+  +..++.. |.++++|+.+....             +++.+  
T Consensus       180 ~~L~~l~l~~n~-l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~-------------~l~~I--  240 (401)
T 4fdw_A          180 YNLKKADLSKTK-ITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE-------------NVSTI--  240 (401)
T ss_dssp             TTCCEEECTTSC-CSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT-------------TCCEE--
T ss_pred             ccCCeeecCCCc-ceEechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC-------------CccCc--
Confidence            888888887764 4555544 44 577777777644  5555543 77777777663210             00000  


Q ss_pred             ceeecccccccCccchhhcccCCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCC-----CC
Q 002284          213 TLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGK-----KF  287 (943)
Q Consensus       213 ~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-----~~  287 (943)
                                  ..    ..|.+ .+|+.+.+. +.++.+           .-.++..+++|+.+.+.++...     .+
T Consensus       241 ------------~~----~aF~~-~~L~~i~lp-~~i~~I-----------~~~aF~~c~~L~~l~l~~~~~~~~~~~~I  291 (401)
T 4fdw_A          241 ------------GQ----EAFRE-SGITTVKLP-NGVTNI-----------ASRAFYYCPELAEVTTYGSTFNDDPEAMI  291 (401)
T ss_dssp             ------------CT----TTTTT-CCCSEEEEE-TTCCEE-----------CTTTTTTCTTCCEEEEESSCCCCCTTCEE
T ss_pred             ------------cc----ccccc-CCccEEEeC-CCccEE-----------ChhHhhCCCCCCEEEeCCccccCCcccEE
Confidence                        00    11222 345555552 222110           0133455556666666554332     23


Q ss_pred             CcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccc
Q 002284          288 PTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEW  366 (943)
Q Consensus       288 p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  366 (943)
                      +...+ ..+++|+.+.+.+ .+...-. .|.++++|+.+.+..+  +..++...+..     + +|+.+.+.++. ....
T Consensus       292 ~~~aF-~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~-----~-~L~~l~l~~n~-~~~l  360 (401)
T 4fdw_A          292 HPYCL-EGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNN-----T-GIKEVKVEGTT-PPQV  360 (401)
T ss_dssp             CTTTT-TTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSS-----S-CCCEEEECCSS-CCBC
T ss_pred             CHHHh-hCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCC-----C-CCCEEEEcCCC-Cccc
Confidence            33333 2367777777774 3333333 6777777888877554  44444433332     5 77777777763 1111


Q ss_pred             cccccCCccccCC-cccEEeecc
Q 002284          367 IPHGCSQEIEGFP-KLRELHIVR  388 (943)
Q Consensus       367 ~~~~~~~~~~~~~-~L~~L~l~~  388 (943)
                          .+..+..++ .++.|++..
T Consensus       361 ----~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          361 ----FEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             ----CCSSCCCSCTTCCEEEECG
T ss_pred             ----ccccccCCCCCccEEEeCH
Confidence                123444553 667777766

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.76  E-value=5.8e-09  Score=112.35  Aligned_cols=88  Identities=17%  Similarity=0.141  Sum_probs=58.8

Q ss_pred             ccchhhhccCcccEEEecC-ccccccC-ccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHH-H
Q 002284           80 SILPRLLKLQRLRVFSLRG-YLISEVP-DSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCAD-M  155 (943)
Q Consensus        80 ~~~~~~~~l~~L~~L~L~~-n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~-~  155 (943)
                      .+|. +..+++|++|+|++ |.++.+| ..|++|++|++|+|++|+|+.+| ..|++|++|++|+|++|.+ ..+|.. |
T Consensus        23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~  100 (347)
T 2ifg_A           23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL-ESLSWKTV  100 (347)
T ss_dssp             TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC-SCCCSTTT
T ss_pred             ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc-ceeCHHHc
Confidence            4666 55777777777775 7777764 56777777777777777777764 4667777777777777753 344433 4


Q ss_pred             hccccCceEEcCCCC
Q 002284          156 GNLIKLHHLNNSNTD  170 (943)
Q Consensus       156 ~~L~~L~~L~l~~n~  170 (943)
                      ..+. |++|++.+|.
T Consensus       101 ~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A          101 QGLS-LQELVLSGNP  114 (347)
T ss_dssp             CSCC-CCEEECCSSC
T ss_pred             ccCC-ceEEEeeCCC
Confidence            4444 7777777776

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.67  E-value=2.2e-08  Score=107.74  Aligned_cols=99  Identities=15%  Similarity=0.074  Sum_probs=82.3

Q ss_pred             cEEEecCc-cccccCccccCCCCCceeecCC-Ccccccc-hhhhhccccceeecCCCcccccccHHHhccccCceEEcCC
Q 002284           92 RVFSLRGY-LISEVPDSIGDLSYLRYLNLSG-TQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSN  168 (943)
Q Consensus        92 ~~L~L~~n-~i~~lp~~~~~l~~L~~L~Ls~-n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~  168 (943)
                      ..++++++ .++.+|. |..+++|++|+|++ |.|+.+| ..|++|++|++|+|++|.+.+..|..|++|++|++|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            34688888 8999999 99999999999996 9999996 6799999999999999987677777899999999999999


Q ss_pred             CCCCcccccc-ccccccccccCceEe
Q 002284          169 TDSLEEMPLG-IGKLTCLLTLCNFVV  193 (943)
Q Consensus       169 n~~~~~~p~~-~~~L~~L~~L~~~~~  193 (943)
                      |. +..+|.+ +..+. |+.|.+..+
T Consensus        90 N~-l~~~~~~~~~~~~-L~~l~l~~N  113 (347)
T 2ifg_A           90 NA-LESLSWKTVQGLS-LQELVLSGN  113 (347)
T ss_dssp             SC-CSCCCSTTTCSCC-CCEEECCSS
T ss_pred             Cc-cceeCHHHcccCC-ceEEEeeCC
Confidence            99 6777766 44444 887754433

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.50  E-value=7.7e-06  Score=89.32  Aligned_cols=85  Identities=8%  Similarity=0.154  Sum_probs=47.1

Q ss_pred             cchhhh-ccC-cccEEEecCcccccc-CccccCCCCCceeecCCC---cccccc-hhhhhccccceeecCCCccccccc-
Q 002284           81 ILPRLL-KLQ-RLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGT---QIRTLP-ESVNKLYNLHTLLLEGCRELKKKC-  152 (943)
Q Consensus        81 ~~~~~~-~l~-~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n---~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p-  152 (943)
                      +....| +++ .|+...+..+ ++.+ ..+|.++.+|+.+.+..|   .++.|. .+|..+.+|+.+.+..+  +..++ 
T Consensus        54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~  130 (394)
T 4gt6_A           54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDS  130 (394)
T ss_dssp             ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECT
T ss_pred             cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehh
Confidence            444444 443 3666666532 4555 355666666666666554   255553 45666666666666553  23333 


Q ss_pred             HHHhccccCceEEcCC
Q 002284          153 ADMGNLIKLHHLNNSN  168 (943)
Q Consensus       153 ~~~~~L~~L~~L~l~~  168 (943)
                      ..|..+.+|+.+.+..
T Consensus       131 ~aF~~c~~L~~i~lp~  146 (394)
T 4gt6_A          131 EAFHHCEELDTVTIPE  146 (394)
T ss_dssp             TTTTTCTTCCEEECCT
T ss_pred             hhhhhhcccccccccc
Confidence            3466667777766654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.50  E-value=8.9e-06  Score=88.84  Aligned_cols=105  Identities=17%  Similarity=0.203  Sum_probs=51.0

Q ss_pred             hhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcC-CccccccceeeeccccCCccCC-CcCCCCC
Q 002284          697 RLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEG-GLLSAKLKRLVIYGCKKLEALP-EGMHNLS  774 (943)
Q Consensus       697 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~-~~~l~~L~~L~l~~~~~l~~~p-~~~~~l~  774 (943)
                      .|.++..|+.+.+.+... ..-...|.++++|+.+.+..  .+..++.. +..+.+|+.+++..+  +..+. ..|.++.
T Consensus       260 aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~  334 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred             eeeecccccEEecccccc-eecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCC
Confidence            355556666665543211 11133455566666666643  24445443 334566666666442  33332 3455666


Q ss_pred             CCCceeecCCCCCccccCCCC-CCCCcceEEecCC
Q 002284          775 SLQYLTIGGVPSLLCFTEDGL-FPTNLHSLEIDGM  808 (943)
Q Consensus       775 ~L~~L~l~~~~~l~~~~~~~~-~~~~L~~L~l~~c  808 (943)
                      +|+.+.+..  .++.+....+ .+++|+.+++.++
T Consensus       335 ~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          335 QLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence            666666642  2444433322 2355555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.41  E-value=3.2e-08  Score=106.57  Aligned_cols=84  Identities=21%  Similarity=0.253  Sum_probs=55.8

Q ss_pred             ccCcccEEEecCcccccc-----Ccccc-CCCCCceeecCCCccccc--chhhhhccccceeecCCCcccccccHHHh--
Q 002284           87 KLQRLRVFSLRGYLISEV-----PDSIG-DLSYLRYLNLSGTQIRTL--PESVNKLYNLHTLLLEGCRELKKKCADMG--  156 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~l-----p~~~~-~l~~L~~L~Ls~n~i~~l--p~~i~~L~~L~~L~L~~n~~~~~~p~~~~--  156 (943)
                      -++.|++|+|++|.++..     ...+. ..++|++|+|++|.|...  ..-...+.+|++|+|++|.+.......+.  
T Consensus        70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            357788888888887653     22222 236888888888887643  22335677888888888865433333332  


Q ss_pred             ---ccccCceEEcCCCC
Q 002284          157 ---NLIKLHHLNNSNTD  170 (943)
Q Consensus       157 ---~L~~L~~L~l~~n~  170 (943)
                         ..++|++|++++|.
T Consensus       150 L~~~~~~L~~L~Ls~n~  166 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNP  166 (372)
T ss_dssp             HHSTTCCCCEEECCSSC
T ss_pred             HHhcCCccceeeCCCCC
Confidence               35678888888887

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.36  E-value=7.9e-08  Score=103.49  Aligned_cols=106  Identities=20%  Similarity=0.133  Sum_probs=56.9

Q ss_pred             ccccEEeecccCCCCCCcchhccchhhh-ccCcccEEEecCcccccc-----Cccc-cCCCCCceeecCCCcccc-----
Q 002284           59 QHLRTLLPVTLLSSRPGYLARSILPRLL-KLQRLRVFSLRGYLISEV-----PDSI-GDLSYLRYLNLSGTQIRT-----  126 (943)
Q Consensus        59 ~~Lr~L~~~~~~~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~l-----p~~~-~~l~~L~~L~Ls~n~i~~-----  126 (943)
                      ++|+.|.+.+      |.+.......+. .+++|++|+|++|.++..     ...+ ...++|++|+|++|.|+.     
T Consensus       101 ~~L~~L~Ls~------n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~  174 (372)
T 3un9_A          101 HALDEVNLAS------CQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAV  174 (372)
T ss_dssp             SCEEEEECTT------CCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHH
T ss_pred             CCceEEEecC------CCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHH
Confidence            4566665432      333333344444 456666666666665432     1112 234566666666666653     


Q ss_pred             cchhhhhccccceeecCCCcccc----cccHHHhccccCceEEcCCCC
Q 002284          127 LPESVNKLYNLHTLLLEGCRELK----KKCADMGNLIKLHHLNNSNTD  170 (943)
Q Consensus       127 lp~~i~~L~~L~~L~L~~n~~~~----~~p~~~~~L~~L~~L~l~~n~  170 (943)
                      ++..+...++|++|+|++|.+..    .++..+...++|++|++++|.
T Consensus       175 l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence            34444556666666666665322    123445556666666666666

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.29  E-value=6.3e-07  Score=83.03  Aligned_cols=89  Identities=13%  Similarity=0.163  Sum_probs=51.7

Q ss_pred             CCcceEEecCCcchhccccccCCCCCCCccEEEecCCCCcCcccCcccccccCCC---CCCccEEEeecCCCCcccc--c
Q 002284          798 TNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTL---PACLTQLEIFNFPNLERLS--S  872 (943)
Q Consensus       798 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~l~~l~--~  872 (943)
                      ..|++||+++|........  .+..+++|++|++++|    ..+++++...-...   .++|++|++++|++++.-.  .
T Consensus        61 ~~L~~LDLs~~~Itd~GL~--~L~~~~~L~~L~L~~C----~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~  134 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFD--HMEGLQYVEKIRLCKC----HYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA  134 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGG--GGTTCSCCCEEEEESC----TTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred             ceEeEEeCcCCCccHHHHH--HhcCCCCCCEEEeCCC----CccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence            4677777777773332222  3567888888888887    33454443321111   2356777777777666532  1


Q ss_pred             ccCCCCCCeEeecCCCCCcc
Q 002284          873 SICDQNLTSLKLTNCPKLKY  892 (943)
Q Consensus       873 ~~~~~~L~~L~l~~C~~L~~  892 (943)
                      ...+++|++|+|++|+.++.
T Consensus       135 L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          135 LHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GGGCTTCCEEEEESCTTCCC
T ss_pred             HhcCCCCCEEECCCCCCCCc
Confidence            12466666677777666665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.16  E-value=1.4e-06  Score=92.82  Aligned_cols=82  Identities=20%  Similarity=0.156  Sum_probs=43.1

Q ss_pred             hcccccccEEEeeccCC---------cccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCC
Q 002284          698 LDNKISLEVIEIVSCEN---------LKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPE  768 (943)
Q Consensus       698 ~~~l~~L~~L~l~~~~~---------~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~  768 (943)
                      ...+++|+.|.+.+...         .+.++..+..+|+|++|+|++|... .++. + ..++|++|++..|........
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence            44566777776654321         1123344456677777777776322 2332 2 256777777766653222111


Q ss_pred             cC--CCCCCCCceeec
Q 002284          769 GM--HNLSSLQYLTIG  782 (943)
Q Consensus       769 ~~--~~l~~L~~L~l~  782 (943)
                      .+  ..+|+|++|+++
T Consensus       212 ~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHHSBCTTCCEEEEE
T ss_pred             HHHHccCCCCcEEEEe
Confidence            22  256677777664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.12  E-value=6.4e-06  Score=87.67  Aligned_cols=64  Identities=20%  Similarity=0.250  Sum_probs=31.8

Q ss_pred             cchhccCCCCcCeeeccCCCCCcccCCCCCCCCccEEEEecCCCCCcCccccccCCCCCccEEEee
Q 002284          532 LPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIR  597 (943)
Q Consensus       532 ~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~  597 (943)
                      +...+..+|+|+.|+|++|... .++.. ..++|++|++..|..............+|+|++|+|+
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            4445556677777777766322 22221 2456666666655522211111111246666666664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.11  E-value=0.00045  Score=74.87  Aligned_cols=124  Identities=10%  Similarity=0.184  Sum_probs=68.4

Q ss_pred             cCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccch-h
Q 002284          457 QLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPK-S  535 (943)
Q Consensus       457 ~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~  535 (943)
                      ...+|+.+.+.      .+++.++...|.++.+|+.+.+..+  ++.+....   |.++ +|+.+.+-.+  +..++. +
T Consensus        44 ~~~~i~~v~ip------~~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~a---F~~c-~l~~i~~~~~--l~~I~~~a  109 (379)
T 4h09_A           44 DRDRISEVRVN------SGITSIGEANFNSCYNMTKVTVAST--VTSIGDGA---FADT-KLQSYTGMER--VKKFGDYV  109 (379)
T ss_dssp             GGGGCSEEEEC------TTEEEECTTTTTTCTTCCEEEECTT--CCEECTTT---TTTC-CCCEEEECTT--CCEECTTT
T ss_pred             cccCCEEEEeC------CCccChHHHHhhCCCCCCEEEeCCc--ceEechhh---hcCC-CCceEECCce--eeEeccce
Confidence            44556666665      4566777777888888888888643  66666655   6665 5666666543  333333 3


Q ss_pred             ccCCCCcCeeeccCCCCCcccCCCCC-CCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCC
Q 002284          536 LLSLSSLTEMRIHNCSSLVSFPEAVL-PSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCH  600 (943)
Q Consensus       536 ~~~l~~L~~L~L~~n~~l~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~  600 (943)
                      |.. .+|+.+.+.++  +..+....+ -.+++.+.+..+  +..+.... +..+..++...+..+.
T Consensus       110 F~~-~~L~~i~lp~~--~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~-f~~~~~l~~~~~~~~~  169 (379)
T 4h09_A          110 FQG-TDLDDFEFPGA--TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGI-GYKAENLEKIEVSSNN  169 (379)
T ss_dssp             TTT-CCCSEEECCTT--CCEECTTTTTTCCCCEEEECTT--CCEECSCT-TTTCTTCCEEEECTTC
T ss_pred             ecc-CCcccccCCCc--cccccccccccceeeeeeccce--eeccccch-hccccccccccccccc
Confidence            433 46777777654  333333332 234555544332  22222221 3356666666665443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.10  E-value=0.00057  Score=73.99  Aligned_cols=80  Identities=9%  Similarity=0.206  Sum_probs=46.2

Q ss_pred             hhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCcc-chhccCCCCcCeeeccCCCCCcccCCCC
Q 002284          482 QLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKL-PKSLLSLSSLTEMRIHNCSSLVSFPEAV  560 (943)
Q Consensus       482 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~l~~~~~~~  560 (943)
                      .|+....+|+++.+..  .++.++...   |.++.+|+.+.+..+  +..+ ..+|.++ +|+.+.+..+  ++.+....
T Consensus        40 ~~~~~~~~i~~v~ip~--~vt~Ig~~a---F~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~a  109 (379)
T 4h09_A           40 PWYKDRDRISEVRVNS--GITSIGEAN---FNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER--VKKFGDYV  109 (379)
T ss_dssp             TTGGGGGGCSEEEECT--TEEEECTTT---TTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT--CCEECTTT
T ss_pred             cccccccCCEEEEeCC--CccChHHHH---hhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce--eeEeccce
Confidence            4556667788877764  467776665   777788888877643  2333 3355554 5666665433  44444333


Q ss_pred             C-CCCccEEEEe
Q 002284          561 L-PSQLRVISIW  571 (943)
Q Consensus       561 ~-~~~L~~L~l~  571 (943)
                      + ..+|+.+.+.
T Consensus       110 F~~~~L~~i~lp  121 (379)
T 4h09_A          110 FQGTDLDDFEFP  121 (379)
T ss_dssp             TTTCCCSEEECC
T ss_pred             eccCCcccccCC
Confidence            3 2345555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.06  E-value=3.7e-06  Score=84.45  Aligned_cols=79  Identities=24%  Similarity=0.220  Sum_probs=39.6

Q ss_pred             cCCCCCceeecCCCccccc---chhhhhccccceeecCCCcccccccHHHhccc--cCceEEcCCCCCCccccc------
Q 002284          109 GDLSYLRYLNLSGTQIRTL---PESVNKLYNLHTLLLEGCRELKKKCADMGNLI--KLHHLNNSNTDSLEEMPL------  177 (943)
Q Consensus       109 ~~l~~L~~L~Ls~n~i~~l---p~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~--~L~~L~l~~n~~~~~~p~------  177 (943)
                      .++++|++|+|++|+|+.+   |..++.+++|++|+|++|.+.+.  ..+..+.  +|++|++++|.+.+.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            3455566666666655543   23445566666666666543222  2233333  566666666654443331      


Q ss_pred             -cccccccccccC
Q 002284          178 -GIGKLTCLLTLC  189 (943)
Q Consensus       178 -~~~~L~~L~~L~  189 (943)
                       .+..+++|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             144555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.96  E-value=2.1e-06  Score=79.53  Aligned_cols=83  Identities=12%  Similarity=0.069  Sum_probs=44.9

Q ss_pred             ccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCC-C----CCCcceEEecCCcchhccccccCCCCCCC
Q 002284          751 KLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGL-F----PTNLHSLEIDGMKIWKSLMQLGGFHRYTS  825 (943)
Q Consensus       751 ~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~----~~~L~~L~l~~c~~l~~~~~~~~~~~l~~  825 (943)
                      +|++||+++|.....--..+..+++|++|++++|..+++..-... .    .++|++|++++|..+++.... .+.++++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCC
Confidence            566666666653322223345666777777777766544321111 0    135666666666666554432 2445666


Q ss_pred             ccEEEecCC
Q 002284          826 LRRLAISGC  834 (943)
Q Consensus       826 L~~L~l~~c  834 (943)
                      |++|+|++|
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            666666665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.95  E-value=2e-06  Score=86.47  Aligned_cols=79  Identities=22%  Similarity=0.301  Sum_probs=64.9

Q ss_pred             ccCcccEEEecCcccccc---CccccCCCCCceeecCCCcccccchhhhhcc--ccceeecCCCccccccc-------HH
Q 002284           87 KLQRLRVFSLRGYLISEV---PDSIGDLSYLRYLNLSGTQIRTLPESVNKLY--NLHTLLLEGCRELKKKC-------AD  154 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~l---p~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~--~L~~L~L~~n~~~~~~p-------~~  154 (943)
                      ++++|++|+|++|.++.+   |..+..+++|++|+|++|.|+.+ ..+..+.  +|++|+|++|...+..|       ..
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            789999999999998765   46677899999999999999988 4455555  99999999998766554       34


Q ss_pred             HhccccCceEEc
Q 002284          155 MGNLIKLHHLNN  166 (943)
Q Consensus       155 ~~~L~~L~~L~l  166 (943)
                      +..+++|+.||-
T Consensus       247 l~~~P~L~~LDg  258 (267)
T 3rw6_A          247 RERFPKLLRLDG  258 (267)
T ss_dssp             HHHCTTCCEESS
T ss_pred             HHHCcccCeECC
Confidence            788999999973

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.83  E-value=7e-06  Score=78.53  Aligned_cols=84  Identities=15%  Similarity=0.119  Sum_probs=44.9

Q ss_pred             ccCcccEEEecCccccc-----cCccccCCCCCceeecCCCcccc-----cchhhhhccccceeec--CCCccccc----
Q 002284           87 KLQRLRVFSLRGYLISE-----VPDSIGDLSYLRYLNLSGTQIRT-----LPESVNKLYNLHTLLL--EGCRELKK----  150 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~-----lp~~~~~l~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L--~~n~~~~~----  150 (943)
                      ..+.|++|+|++|.++.     +...+...+.|++|+|++|.|..     +...+...+.|++|+|  ++|.+...    
T Consensus        63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~  142 (185)
T 1io0_A           63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  142 (185)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence            45566666666666542     23344444566666666666552     3444555556666666  55543221    


Q ss_pred             ccHHHhccccCceEEcCCCC
Q 002284          151 KCADMGNLIKLHHLNNSNTD  170 (943)
Q Consensus       151 ~p~~~~~L~~L~~L~l~~n~  170 (943)
                      +...+...+.|++|++++|.
T Consensus       143 l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          143 IANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCCCcCEEeccCCC
Confidence            22334444566666666665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.75  E-value=2.2e-05  Score=74.98  Aligned_cols=105  Identities=17%  Similarity=0.149  Sum_probs=80.1

Q ss_pred             hccCcccEEEecCc-cccc-----cCccccCCCCCceeecCCCcccc-----cchhhhhccccceeecCCCccccc----
Q 002284           86 LKLQRLRVFSLRGY-LISE-----VPDSIGDLSYLRYLNLSGTQIRT-----LPESVNKLYNLHTLLLEGCRELKK----  150 (943)
Q Consensus        86 ~~l~~L~~L~L~~n-~i~~-----lp~~~~~l~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~n~~~~~----  150 (943)
                      ...+.|++|+|++| .++.     +...+...++|++|+|++|.|..     +...+...+.|++|+|++|.+...    
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            37899999999999 7753     45667778999999999999873     455677778999999999975432    


Q ss_pred             ccHHHhccccCceEEc--CCCCCCcc-----ccccccccccccccCce
Q 002284          151 KCADMGNLIKLHHLNN--SNTDSLEE-----MPLGIGKLTCLLTLCNF  191 (943)
Q Consensus       151 ~p~~~~~L~~L~~L~l--~~n~~~~~-----~p~~~~~L~~L~~L~~~  191 (943)
                      +...+...+.|++|++  ++|. ++.     +...+...++|++|+..
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~  159 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYH  159 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             HHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEecc
Confidence            4556777889999999  8888 443     23345556788888543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.60  E-value=0.0024  Score=56.35  Aligned_cols=54  Identities=19%  Similarity=0.192  Sum_probs=43.1

Q ss_pred             cEEEecCcccc--ccCccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcc
Q 002284           92 RVFSLRGYLIS--EVPDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRE  147 (943)
Q Consensus        92 ~~L~L~~n~i~--~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~  147 (943)
                      ++++.+++.++  .+|..+.  .+|++|+|++|+|+.|| ..|..+.+|++|+|++|..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            47888888888  8887654  46889999999999996 4678888888888888854

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.51  E-value=0.036  Score=52.21  Aligned_cols=83  Identities=13%  Similarity=0.090  Sum_probs=50.5

Q ss_pred             ccCcccEEEecCc-cccc-----cCccccCCCCCceeecCCCccc-----ccchhhhhccccceeecCCCccccc----c
Q 002284           87 KLQRLRVFSLRGY-LISE-----VPDSIGDLSYLRYLNLSGTQIR-----TLPESVNKLYNLHTLLLEGCRELKK----K  151 (943)
Q Consensus        87 ~l~~L~~L~L~~n-~i~~-----lp~~~~~l~~L~~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~n~~~~~----~  151 (943)
                      +-+.|+.|+|+++ .|+.     +-+.+..-+.|+.|+|++|.|.     .|-+.+..=+.|++|+|++|.+...    +
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            4567777777764 5542     3445555667777777777776     3344555567777777777753322    2


Q ss_pred             cHHHhccccCceEEcCCC
Q 002284          152 CADMGNLIKLHHLNNSNT  169 (943)
Q Consensus       152 p~~~~~L~~L~~L~l~~n  169 (943)
                      -+.+..-+.|++|+++++
T Consensus       119 a~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHTTTTCCCSEEECCCC
T ss_pred             HHHHhhCCceeEEECCCC
Confidence            233444456777777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.30  E-value=0.033  Score=48.93  Aligned_cols=53  Identities=15%  Similarity=0.192  Sum_probs=43.5

Q ss_pred             ceeecCCCccc--ccchhhhhccccceeecCCCcccccccH-HHhccccCceEEcCCCC
Q 002284          115 RYLNLSGTQIR--TLPESVNKLYNLHTLLLEGCRELKKKCA-DMGNLIKLHHLNNSNTD  170 (943)
Q Consensus       115 ~~L~Ls~n~i~--~lp~~i~~L~~L~~L~L~~n~~~~~~p~-~~~~L~~L~~L~l~~n~  170 (943)
                      ..++-++++++  .+|..+.  .+|++|+|++|. +..+|. .|..+++|++|+|++|.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence            47888999998  8886543  579999999997 555554 58999999999999997

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=93.24  E-value=0.061  Score=50.67  Aligned_cols=110  Identities=17%  Similarity=0.154  Sum_probs=76.4

Q ss_pred             cccccccEEeecccCCCCCCcchh----ccchhhhccCcccEEEecCccccc-----cCccccCCCCCceeecCCCccc-
Q 002284           56 YDIQHLRTLLPVTLLSSRPGYLAR----SILPRLLKLQRLRVFSLRGYLISE-----VPDSIGDLSYLRYLNLSGTQIR-  125 (943)
Q Consensus        56 ~~~~~Lr~L~~~~~~~l~~~~~~~----~~~~~~~~l~~L~~L~L~~n~i~~-----lp~~~~~l~~L~~L~Ls~n~i~-  125 (943)
                      .+-+.|+.|.+..+.     .+..    .+-..+..-+.|+.|+|++|.|+.     +-+.+..=+.|++|+|++|.|. 
T Consensus        38 ~~n~~L~~L~L~~nn-----~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           38 EDDTDLKEVNINNMK-----RVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             TTCSSCCEEECTTCC-----SSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             hcCCCccEEECCCCC-----CCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            346788998775421     2221    223333366899999999999874     3455666688999999999998 


Q ss_pred             ----ccchhhhhccccceeecCCCcc--cc-----cccHHHhccccCceEEcCCCC
Q 002284          126 ----TLPESVNKLYNLHTLLLEGCRE--LK-----KKCADMGNLIKLHHLNNSNTD  170 (943)
Q Consensus       126 ----~lp~~i~~L~~L~~L~L~~n~~--~~-----~~p~~~~~L~~L~~L~l~~n~  170 (943)
                          .|-+++..=+.|++|+|++|..  ++     .+.+.+..-+.|+.|+++.+.
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence                3445566667799999987532  23     234456677899999998776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	943
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 36/255 (14%), Positives = 69/255 (27%), Gaps = 15/255 (5%)

Query: 77  LARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQI--RTLPESVNKL 134
           L   +  RLL    +  F      + +          +++++LS + I   TL   +++ 
Sbjct: 12  LHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC 70

Query: 135 YNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVG 194
             L  L LEG R        +     L  LN S      E  L     +C       +  
Sbjct: 71  SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 130

Query: 195 KDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLS 254
               +       + H+  T+    L   +      +            +       +   
Sbjct: 131 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL--------VRRCPNLVHLDL 182

Query: 255 SREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP 314
           S     +            L+   +S                  + TLK           
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRC---YDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 315 SVGQLP-SLKHLEVR 328
           ++  L  +L HL++ 
Sbjct: 240 TLQLLKEALPHLQIN 254

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	943
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.89
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.85
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.84
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.79
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.79
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.71
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.67
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.65
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.63
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.63
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.62
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.51
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.5
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.48
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.48
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.44
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.38
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.37
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.35
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.33
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.32
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.31
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.3
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.27
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.22
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.17
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.17
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.14
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.0
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.98
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.9
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.87
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.62
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.48
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.06
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.74
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.3
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.78
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.56

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.89  E-value=5.3e-22  Score=216.67  Aligned_cols=85  Identities=19%  Similarity=0.306  Sum_probs=73.1

Q ss_pred             ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284           87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN  166 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l  166 (943)
                      .+.+|++|+++++.|+.+ +.++.+++|++|+|++|+|+.+|+ ++++++|++|++++|.+. .++ .++++++|+.|++
T Consensus        42 ~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~-~i~-~l~~l~~L~~L~~  117 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTL  117 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCCEEEC
T ss_pred             HhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccc-ccc-ccccccccccccc
Confidence            678999999999999988 478999999999999999999974 999999999999999744 443 3899999999999


Q ss_pred             CCCCCCcccc
Q 002284          167 SNTDSLEEMP  176 (943)
Q Consensus       167 ~~n~~~~~~p  176 (943)
                      +++. ...++
T Consensus       118 ~~~~-~~~~~  126 (384)
T d2omza2         118 FNNQ-ITDID  126 (384)
T ss_dssp             CSSC-CCCCG
T ss_pred             cccc-ccccc
Confidence            9887 44443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=3e-20  Score=202.58  Aligned_cols=88  Identities=23%  Similarity=0.292  Sum_probs=68.1

Q ss_pred             EecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEcCCCCCCcc
Q 002284           95 SLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEE  174 (943)
Q Consensus        95 ~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~  174 (943)
                      .++.+.++... ....+.+|++|+++++.|+.+ +.+..|++|++|++++|. +..+| .|+++++|++|++++|. +..
T Consensus        28 ~l~~~~~~~~~-~~~~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~-l~~l~-~l~~L~~L~~L~L~~n~-i~~  102 (384)
T d2omza2          28 VLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQ-LTDIT-PLKNLTKLVDILMNNNQ-IAD  102 (384)
T ss_dssp             HTTCSSTTSEE-CHHHHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSC-CCC
T ss_pred             HhCCCCCCCcc-CHHHhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCc-CCCCc-cccCCcccccccccccc-ccc
Confidence            45555554432 235678999999999999998 578999999999999996 55565 39999999999999998 555


Q ss_pred             cccccccccccccc
Q 002284          175 MPLGIGKLTCLLTL  188 (943)
Q Consensus       175 ~p~~~~~L~~L~~L  188 (943)
                      ++. ++++++|+.|
T Consensus       103 i~~-l~~l~~L~~L  115 (384)
T d2omza2         103 ITP-LANLTNLTGL  115 (384)
T ss_dssp             CGG-GTTCTTCCEE
T ss_pred             ccc-cccccccccc
Confidence            543 6666666666

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.84  E-value=2.8e-22  Score=211.32  Aligned_cols=106  Identities=20%  Similarity=0.261  Sum_probs=65.6

Q ss_pred             ccchhhhccCcccEEEecC-cccc-ccCccccCCCCCceeecCCCccccc-chhhhhccccceeecCCCcccccccHHHh
Q 002284           80 SILPRLLKLQRLRVFSLRG-YLIS-EVPDSIGDLSYLRYLNLSGTQIRTL-PESVNKLYNLHTLLLEGCRELKKKCADMG  156 (943)
Q Consensus        80 ~~~~~~~~l~~L~~L~L~~-n~i~-~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p~~~~  156 (943)
                      .+|++++++++|++|+|++ |.+. .+|.+|+++++|++|+|++|++..+ |..+..+.+|+++++++|.....+|..++
T Consensus        67 ~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~  146 (313)
T d1ogqa_          67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             CCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhc
Confidence            3555666666666666664 4443 5666666666666666666666655 34556666666666666665566666666


Q ss_pred             ccccCceEEcCCCCCCccccccccccccc
Q 002284          157 NLIKLHHLNNSNTDSLEEMPLGIGKLTCL  185 (943)
Q Consensus       157 ~L~~L~~L~l~~n~~~~~~p~~~~~L~~L  185 (943)
                      ++++|+++++++|.+.+.+|..++.+.++
T Consensus       147 ~l~~L~~l~l~~n~l~~~ip~~~~~l~~l  175 (313)
T d1ogqa_         147 SLPNLVGITFDGNRISGAIPDSYGSFSKL  175 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGGGGCCCTT
T ss_pred             cCcccceeecccccccccccccccccccc
Confidence            66666666666666555666655555544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.79  E-value=1.1e-19  Score=191.23  Aligned_cols=251  Identities=12%  Similarity=0.063  Sum_probs=156.8

Q ss_pred             ccCeEEeecCCCcc--cchhhhhhhcCccceeceEEEec-CCCcCccchhccCCCCcCeeeccCCCCCcccCCC-CCCCC
Q 002284          489 TLKRLKIERCPKLQ--FLEEEDQWQFGLSFRLEHLELIN-CQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEA-VLPSQ  564 (943)
Q Consensus       489 ~L~~L~l~~~~~l~--~l~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~-~~~~~  564 (943)
                      +++.|+++++..-.  .++..    +..+++|++|++++ |.+.+.+|..+.++++|++|+|++|...+..+.. .....
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~----l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSS----LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGG----GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             EEEEEECCCCCCCCCCCCChH----HhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhh
Confidence            46667777764222  23333    77888888888886 5666778888888888888888888654433332 22677


Q ss_pred             ccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCc--CCCCCCceEEeccCcCccccccccCcccccccCC
Q 002284          565 LRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGV--QLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTS  642 (943)
Q Consensus       565 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~  642 (943)
                      |+.+++++|.....+|..+  .+++.|+.+++++|.+.+.+|..  .....++.++++++ ++......           
T Consensus       127 L~~l~l~~N~~~~~~p~~l--~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n-~l~~~~~~-----------  192 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSI--SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPP-----------  192 (313)
T ss_dssp             CCEEECCSSEEESCCCGGG--GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCG-----------
T ss_pred             hcccccccccccccCchhh--ccCcccceeeccccccccccccccccccccccccccccc-cccccccc-----------
Confidence            8888888888777777664  47888888888888877666543  22222344554443 22111100           


Q ss_pred             ccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccc
Q 002284          643 LLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGL  722 (943)
Q Consensus       643 ~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~  722 (943)
                                                   ....  .....+++.++.....++..+..+++++.+++++|...+.+| .+
T Consensus       193 -----------------------------~~~~--l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~  240 (313)
T d1ogqa_         193 -----------------------------TFAN--LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KV  240 (313)
T ss_dssp             -----------------------------GGGG--CCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GC
T ss_pred             -----------------------------cccc--cccccccccccccccccccccccccccccccccccccccccc-cc
Confidence                                         0000  123355566655555566666666677777777766665544 35


Q ss_pred             cCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccc
Q 002284          723 HKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCF  790 (943)
Q Consensus       723 ~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~  790 (943)
                      ..+++|+.|++++|...+.+|..+..+++|++|++++|++.+.+|+ ++++++|+.+++++|+.+...
T Consensus       241 ~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             ccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence            6666777777777765556776666667777777777766666663 456666777777666654433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=1.1e-18  Score=182.86  Aligned_cols=107  Identities=14%  Similarity=0.130  Sum_probs=57.8

Q ss_pred             CCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCeeEEecCcCceeeCccccCCCCCCC
Q 002284          270 PHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIP  348 (943)
Q Consensus       270 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~  348 (943)
                      .+++|+.+++.++....+|..+    +++|++|++++|...+..+ .+..++.+++|++++|......+..+.+      
T Consensus       148 ~l~~L~~l~l~~n~l~~l~~~~----~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~------  217 (305)
T d1xkua_         148 GMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN------  217 (305)
T ss_dssp             GCTTCCEEECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG------
T ss_pred             cccccCccccccCCccccCccc----CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccc------
Confidence            3445555555555555555432    5667777777777666555 6667777777777776533322222222      


Q ss_pred             CCCcceeecccccccccccccccCCccccCCcccEEeeccCCCcc
Q 002284          349 FPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQ  393 (943)
Q Consensus       349 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~  393 (943)
                      +++|++|++++|. +..     +|..+..+++|++|++++ |+++
T Consensus       218 l~~L~~L~L~~N~-L~~-----lp~~l~~l~~L~~L~Ls~-N~i~  255 (305)
T d1xkua_         218 TPHLRELHLNNNK-LVK-----VPGGLADHKYIQVVYLHN-NNIS  255 (305)
T ss_dssp             STTCCEEECCSSC-CSS-----CCTTTTTCSSCCEEECCS-SCCC
T ss_pred             cccceeeeccccc-ccc-----cccccccccCCCEEECCC-CccC
Confidence            4555555555552 221     233444555555555555 4554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=4.3e-17  Score=170.45  Aligned_cols=106  Identities=18%  Similarity=0.295  Sum_probs=70.5

Q ss_pred             cccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCCCCCccE
Q 002284          488 ATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRV  567 (943)
Q Consensus       488 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~  567 (943)
                      ++++.|++++| .++.++...   |..+++|++|++++|.+....|.+|..+++|++|++++|+ ++.+|.. ..+.++.
T Consensus        31 ~~l~~L~Ls~N-~i~~l~~~~---f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~~-~~~~l~~  104 (305)
T d1xkua_          31 PDTALLDLQNN-KITEIKDGD---FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEK-MPKTLQE  104 (305)
T ss_dssp             TTCCEEECCSS-CCCCBCTTT---TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSS-CCTTCCE
T ss_pred             CCCCEEECcCC-cCCCcChhH---hhccccccccccccccccccchhhhhCCCccCEecccCCc-cCcCccc-hhhhhhh
Confidence            45677777777 366666544   7778888888888887776667778888888888888885 5556543 3456777


Q ss_pred             EEEecCCCCCcCccccccCCCCCccEEEeecCCC
Q 002284          568 ISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHL  601 (943)
Q Consensus       568 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~  601 (943)
                      |++.+|.... ++... +.....+..++...|+.
T Consensus       105 L~~~~n~l~~-l~~~~-~~~~~~~~~l~~~~n~~  136 (305)
T d1xkua_         105 LRVHENEITK-VRKSV-FNGLNQMIVVELGTNPL  136 (305)
T ss_dssp             EECCSSCCCB-BCHHH-HTTCTTCCEEECCSSCC
T ss_pred             hhccccchhh-hhhhh-hhccccccccccccccc
Confidence            7777776433 33222 23455666666666543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.71  E-value=5.7e-16  Score=166.01  Aligned_cols=88  Identities=25%  Similarity=0.314  Sum_probs=53.1

Q ss_pred             CcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEcCC
Q 002284           89 QRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSN  168 (943)
Q Consensus        89 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~  168 (943)
                      .++++|||+++.++.+|+.   .++|++|+|++|+|+++|+.+   .+|+.|++++|. +..++. +  .+.|++|++++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~-l~~l~~-l--p~~L~~L~L~~  107 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNNN-LKALSD-L--PPLLEYLGVSN  107 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSC-CSCCCS-C--CTTCCEEECCS
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhhcc-cchhhh-h--ccccccccccc
Confidence            3566777777777777653   346777777777777776543   456666666664 333321 1  13477777777


Q ss_pred             CCCCcccccccccccccccc
Q 002284          169 TDSLEEMPLGIGKLTCLLTL  188 (943)
Q Consensus       169 n~~~~~~p~~~~~L~~L~~L  188 (943)
                      |. +..+|. ++.+++|++|
T Consensus       108 n~-l~~lp~-~~~l~~L~~L  125 (353)
T d1jl5a_         108 NQ-LEKLPE-LQNSSFLKII  125 (353)
T ss_dssp             SC-CSSCCC-CTTCTTCCEE
T ss_pred             cc-cccccc-hhhhccceee
Confidence            76 556653 4556666655

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.9e-16  Score=161.13  Aligned_cols=87  Identities=22%  Similarity=0.167  Sum_probs=44.1

Q ss_pred             ccchhhhccCcccEEEecCccccccC-ccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhcc
Q 002284           80 SILPRLLKLQRLRVFSLRGYLISEVP-DSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNL  158 (943)
Q Consensus        80 ~~~~~~~~l~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L  158 (943)
                      .+|+++.  +.+++|+|++|.++.+| .+|.++++|++|+|++|+|+.+|. ++.+++|++|++++|. +...|..+.++
T Consensus        24 ~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l   99 (266)
T d1p9ag_          24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQ-LQSLPLLGQTL   99 (266)
T ss_dssp             SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSC-CSSCCCCTTTC
T ss_pred             eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccccccccccccc-ccccccccccc
Confidence            3444433  34555555555555553 345555555555555555555542 3455555555555553 33334445555


Q ss_pred             ccCceEEcCCCC
Q 002284          159 IKLHHLNNSNTD  170 (943)
Q Consensus       159 ~~L~~L~l~~n~  170 (943)
                      ++|++|++++|.
T Consensus       100 ~~L~~L~l~~~~  111 (266)
T d1p9ag_         100 PALTVLDVSFNR  111 (266)
T ss_dssp             TTCCEEECCSSC
T ss_pred             cccccccccccc
Confidence            555555555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.1e-16  Score=164.96  Aligned_cols=203  Identities=16%  Similarity=0.145  Sum_probs=124.5

Q ss_pred             ceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCC--CCCccEEEEecCCCCCcCccccccCCCCCccE
Q 002284          516 FRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVL--PSQLRVISIWDSGALKFLPEAWMLDNNSSLEI  593 (943)
Q Consensus       516 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~  593 (943)
                      +++++|+|++|.+.+..+.+|.++++|++|++++|. +..++...+  ...++.+.+..+..++.++... ++++++|++
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~-~~~l~~L~~  109 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT-FHGLGRLHT  109 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT-TTTCTTCCE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhcccccccccccccc-ccccccccccccccccccccccccccccccchh-hcccccCCE
Confidence            457788888876544444567778888888888775 444443333  4666666666555555554433 456777777


Q ss_pred             EEeecCCCcccccC-cCCCCCCceEEeccCcCccccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhh
Q 002284          594 LDIRHCHLLTYIAG-VQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLV  672 (943)
Q Consensus       594 L~l~~n~~~~~~~~-~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~  672 (943)
                      |++++|......+. ...+                                                             
T Consensus       110 L~l~~n~~~~~~~~~~~~~-------------------------------------------------------------  128 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFRGL-------------------------------------------------------------  128 (284)
T ss_dssp             EECTTSCCCCCCTTTTTTC-------------------------------------------------------------
T ss_pred             EecCCcccccccccccchh-------------------------------------------------------------
Confidence            77777764321111 1122                                                             


Q ss_pred             cCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCcccccc
Q 002284          673 VGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKL  752 (943)
Q Consensus       673 ~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L  752 (943)
                           +.|+.+++++|...+..+..+..+++|+.|++++|.+.+..+..+.++++|+++++++|......|..+..+++|
T Consensus       129 -----~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L  203 (284)
T d1ozna_         129 -----AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL  203 (284)
T ss_dssp             -----TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             -----cccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhc
Confidence                 234445555443322223345566666677777666655556666777777777777776555556666667777


Q ss_pred             ceeeeccccCCccCCCcCCCCCCCCceeecCCCC
Q 002284          753 KRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPS  786 (943)
Q Consensus       753 ~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~  786 (943)
                      ++|++++|...+..|..++.+++|++|++++|+.
T Consensus       204 ~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             ccccccccccccccccccccccccCEEEecCCCC
Confidence            7777777776555555667777777777777663

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.6e-15  Score=154.22  Aligned_cols=102  Identities=16%  Similarity=0.161  Sum_probs=62.5

Q ss_pred             cccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCCCCCccE
Q 002284          488 ATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRV  567 (943)
Q Consensus       488 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~  567 (943)
                      ..+.+.+.+++ .++.+|..    +.  +++++|+|++|.+.+..+.+|..+++|++|+|++|. ++.++....+++|++
T Consensus        10 ~~~~~v~C~~~-~L~~iP~~----lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~~~~l~~L~~   81 (266)
T d1p9ag_          10 ASHLEVNCDKR-NLTALPPD----LP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGT   81 (266)
T ss_dssp             TTCCEEECTTS-CCSSCCSC----CC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCE
T ss_pred             CCCeEEEccCC-CCCeeCcC----cC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccc-ccccccccccccccc
Confidence            33444444444 36666543    22  468888888886655445678888888888888885 555555555666666


Q ss_pred             EEEecCCCCCcCccccccCCCCCccEEEeecCC
Q 002284          568 ISIWDSGALKFLPEAWMLDNNSSLEILDIRHCH  600 (943)
Q Consensus       568 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~  600 (943)
                      |++++|+ +...+..  +..+++|++|++++|.
T Consensus        82 L~Ls~N~-l~~~~~~--~~~l~~L~~L~l~~~~  111 (266)
T d1p9ag_          82 LDLSHNQ-LQSLPLL--GQTLPALTVLDVSFNR  111 (266)
T ss_dssp             EECCSSC-CSSCCCC--TTTCTTCCEEECCSSC
T ss_pred             ccccccc-ccccccc--cccccccccccccccc
Confidence            6666665 3333333  2356666666666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.63  E-value=1.1e-13  Score=147.70  Aligned_cols=315  Identities=27%  Similarity=0.316  Sum_probs=175.0

Q ss_pred             cccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCCCCCccE
Q 002284          488 ATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRV  567 (943)
Q Consensus       488 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~  567 (943)
                      .+++.|+++++. ++.+|+.       .++|++|++++|.+ +.+|..   +.+|++|++++|. ++.++.  .++.|++
T Consensus        38 ~~l~~LdLs~~~-L~~lp~~-------~~~L~~L~Ls~N~l-~~lp~~---~~~L~~L~l~~n~-l~~l~~--lp~~L~~  102 (353)
T d1jl5a_          38 RQAHELELNNLG-LSSLPEL-------PPHLESLVASCNSL-TELPEL---PQSLKSLLVDNNN-LKALSD--LPPLLEY  102 (353)
T ss_dssp             HTCSEEECTTSC-CSCCCSC-------CTTCSEEECCSSCC-SSCCCC---CTTCCEEECCSSC-CSCCCS--CCTTCCE
T ss_pred             cCCCEEEeCCCC-CCCCCCC-------CCCCCEEECCCCCC-cccccc---hhhhhhhhhhhcc-cchhhh--hcccccc
Confidence            467788888774 6666532       35788888887744 456654   4577888888875 444542  3567888


Q ss_pred             EEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCcCCCCCCceEEeccCcCccccccccCcccccccCCcccee
Q 002284          568 ISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECL  647 (943)
Q Consensus       568 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L  647 (943)
                      |++++|. +..+|.   .+.+++|++|++++|......   .....+..+.+..+.......        +..++     
T Consensus       103 L~L~~n~-l~~lp~---~~~l~~L~~L~l~~~~~~~~~---~~~~~l~~l~~~~~~~~~~~~--------l~~l~-----  162 (353)
T d1jl5a_         103 LGVSNNQ-LEKLPE---LQNSSFLKIIDVDNNSLKKLP---DLPPSLEFIAAGNNQLEELPE--------LQNLP-----  162 (353)
T ss_dssp             EECCSSC-CSSCCC---CTTCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC--------CTTCT-----
T ss_pred             ccccccc-cccccc---hhhhccceeeccccccccccc---cccccccchhhcccccccccc--------ccccc-----
Confidence            8888777 455654   236778888888777643322   223345555554432211100        11222     


Q ss_pred             eeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCC
Q 002284          648 EIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWH  727 (943)
Q Consensus       648 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~  727 (943)
                                                     .++.++++++.... .+   ......+.+...+ .....+|. +..++.
T Consensus       163 -------------------------------~l~~L~l~~n~~~~-~~---~~~~~~~~l~~~~-~~~~~~~~-~~~l~~  205 (353)
T d1jl5a_         163 -------------------------------FLTAIYADNNSLKK-LP---DLPLSLESIVAGN-NILEELPE-LQNLPF  205 (353)
T ss_dssp             -------------------------------TCCEEECCSSCCSS-CC---CCCTTCCEEECCS-SCCSSCCC-CTTCTT
T ss_pred             -------------------------------cceecccccccccc-cc---ccccccccccccc-cccccccc-cccccc
Confidence                                           34444444433221 11   0111122222222 22223332 456777


Q ss_pred             ccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceEEecC
Q 002284          728 LQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDG  807 (943)
Q Consensus       728 L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~  807 (943)
                      |+.+++++|. ...+|..   ..++..+.+.++... ..+.   ..+++...++..+.. ..++.   ........++..
T Consensus       206 L~~l~l~~n~-~~~~~~~---~~~l~~~~~~~~~~~-~~~~---~~~~l~~~~~~~~~~-~~l~~---l~~~~~~~~~~~  273 (353)
T d1jl5a_         206 LTTIYADNNL-LKTLPDL---PPSLEALNVRDNYLT-DLPE---LPQSLTFLDVSENIF-SGLSE---LPPNLYYLNASS  273 (353)
T ss_dssp             CCEEECCSSC-CSSCCSC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCC-SEESC---CCTTCCEEECCS
T ss_pred             cccccccccc-ccccccc---ccccccccccccccc-cccc---ccccccccccccccc-ccccc---ccchhccccccc
Confidence            7888887773 3334432   335666666665532 2222   233444444443321 11111   023344445544


Q ss_pred             CcchhccccccCCCCCCCccEEEecCCCCcCcccCcccccccCCCCCCccEEEeecCCCCcccccccCCCCCCeEeecCC
Q 002284          808 MKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSICDQNLTSLKLTNC  887 (943)
Q Consensus       808 c~~l~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~C  887 (943)
                      +.....      ...+++|++|++++|  .+..+|.        .+++|+.|+++++ +++++|.  .+++|++|++++|
T Consensus       274 ~~~~~~------~~~~~~L~~L~Ls~N--~l~~lp~--------~~~~L~~L~L~~N-~L~~l~~--~~~~L~~L~L~~N  334 (353)
T d1jl5a_         274 NEIRSL------CDLPPSLEELNVSNN--KLIELPA--------LPPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYN  334 (353)
T ss_dssp             SCCSEE------CCCCTTCCEEECCSS--CCSCCCC--------CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS
T ss_pred             Cccccc------cccCCCCCEEECCCC--ccCcccc--------ccCCCCEEECCCC-cCCcccc--ccCCCCEEECcCC
Confidence            433221      234678888888884  4556652        4578888888775 6888874  3678999999997


Q ss_pred             CCCccCCCCCCCCccceEeec
Q 002284          888 PKLKYFPEKGLPASLLRLEIK  908 (943)
Q Consensus       888 ~~L~~~~~~~l~~sL~~L~i~  908 (943)
                      + |+.+|.  +|.+|+.|.|.
T Consensus       335 ~-L~~lp~--~~~~L~~L~~~  352 (353)
T d1jl5a_         335 P-LREFPD--IPESVEDLRMN  352 (353)
T ss_dssp             C-CSSCCC--CCTTCCEEECC
T ss_pred             c-CCCCCc--cccccCeeECc
Confidence            6 889887  78889998874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.7e-15  Score=153.46  Aligned_cols=212  Identities=18%  Similarity=0.148  Sum_probs=115.9

Q ss_pred             CcccCCCCCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCc-CCCCCCceEEeccCcCccccccc
Q 002284          553 LVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGV-QLPPSLKQLEIYNCDNLRTLTAE  631 (943)
Q Consensus       553 l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~~~~L~~l~~~  631 (943)
                      ++.+|. ..++.+++|++++|. ++.++... +.++++|++|++++|.+....+.. ...+.++.+.+.....++.++..
T Consensus        23 L~~iP~-~ip~~~~~L~Ls~N~-i~~i~~~~-f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~   99 (284)
T d1ozna_          23 LQAVPV-GIPAASQRIFLHGNR-ISHVPAAS-FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA   99 (284)
T ss_dssp             CSSCCT-TCCTTCSEEECTTSC-CCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CCccCC-CCCCCCCEEECcCCc-CCCCCHHH-hhccccccccccccccccccccccccccccccccccccccccccccch
Confidence            444443 234556666666665 34444332 457788888888877654332211 22334555544444444433310


Q ss_pred             cCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccccccEEEeec
Q 002284          632 EGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVS  711 (943)
Q Consensus       632 ~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~  711 (943)
                                                              .+..+ ++|++|++++|......+..+...++|+.+++++
T Consensus       100 ----------------------------------------~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~  138 (284)
T d1ozna_         100 ----------------------------------------TFHGL-GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD  138 (284)
T ss_dssp             ----------------------------------------TTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             ----------------------------------------hhccc-ccCCEEecCCcccccccccccchhcccchhhhcc
Confidence                                                    11111 3466666666554433344555666677777777


Q ss_pred             cCCcccccccccCCCCccEEeccCCCCCcccCc-CCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccc
Q 002284          712 CENLKMLPHGLHKLWHLQEIDIQDCENLVSFPE-GGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCF  790 (943)
Q Consensus       712 ~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~  790 (943)
                      |.+.+..+..+..+++|++|++++|. +..++. .+..+++|+.+++++|...+..|..|..+++|++|++++|......
T Consensus       139 N~l~~i~~~~f~~~~~L~~L~l~~N~-l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~  217 (284)
T d1ozna_         139 NALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (284)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             ccccccChhHhccccchhhcccccCc-ccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccc
Confidence            66665555566666667777777663 344433 3445666777777776666655666666667777777666643333


Q ss_pred             cCCCCCCCCcceEEecCCc
Q 002284          791 TEDGLFPTNLHSLEIDGMK  809 (943)
Q Consensus       791 ~~~~~~~~~L~~L~l~~c~  809 (943)
                      +..+..+++|+.|++++|+
T Consensus       218 ~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         218 TEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             HHHHTTCTTCCEEECCSSC
T ss_pred             ccccccccccCEEEecCCC
Confidence            3333344566666666655

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=1.9e-14  Score=139.97  Aligned_cols=80  Identities=23%  Similarity=0.297  Sum_probs=67.0

Q ss_pred             ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284           87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN  166 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l  166 (943)
                      .+..|+.|++++|.++.++ .+..+++|++|++++|+|+.++ .++.+++|++|++++|. +..+| .+.++++|+.|++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEEC
T ss_pred             HhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCcc-ccccCcccccccccccc-ccccc-ccccccccccccc
Confidence            5678899999999988875 4888999999999999998886 47889999999999886 55565 5888899999999


Q ss_pred             CCCC
Q 002284          167 SNTD  170 (943)
Q Consensus       167 ~~n~  170 (943)
                      ++|.
T Consensus       120 ~~~~  123 (210)
T d1h6ta2         120 EHNG  123 (210)
T ss_dssp             TTSC
T ss_pred             cccc
Confidence            8887

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.50  E-value=3.1e-14  Score=137.23  Aligned_cols=80  Identities=19%  Similarity=0.299  Sum_probs=61.0

Q ss_pred             ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284           87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN  166 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l  166 (943)
                      .+.++++|+++++.++.++ .+..+++|++|++++|+|+.++. ++++++|++|++++|. ...+| .++++++|++|++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADIT-PLANLTNLTGLTL  113 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEEC
T ss_pred             HhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCcccccccccccc-ccccc-ccccccccccccc
Confidence            5678888888888887774 57778888888888888887754 7788888888888875 44444 4778888888888


Q ss_pred             CCCC
Q 002284          167 SNTD  170 (943)
Q Consensus       167 ~~n~  170 (943)
                      +++.
T Consensus       114 ~~~~  117 (199)
T d2omxa2         114 FNNQ  117 (199)
T ss_dssp             CSSC
T ss_pred             cccc
Confidence            7776

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.8e-13  Score=136.97  Aligned_cols=75  Identities=21%  Similarity=0.274  Sum_probs=46.7

Q ss_pred             cEEEecCccccccCccccCCCCCceeecCCCcccccch-hhhhccccceeecCCCcccccccH-HHhccccCceEEcCC
Q 002284           92 RVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPE-SVNKLYNLHTLLLEGCRELKKKCA-DMGNLIKLHHLNNSN  168 (943)
Q Consensus        92 ~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~n~~~~~~p~-~~~~L~~L~~L~l~~  168 (943)
                      ++++.++..++.+|..+.  +++++|+|++|.|+.+|. +|.++++|++|++++|.....+|. .|.++++++++++..
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            566666666666665543  466777777777776653 566677777777776654444433 366666666666544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.48  E-value=6.9e-14  Score=138.26  Aligned_cols=81  Identities=23%  Similarity=0.316  Sum_probs=65.9

Q ss_pred             hccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEE
Q 002284           86 LKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLN  165 (943)
Q Consensus        86 ~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~  165 (943)
                      ..+.+|+.|++.+|.|+.++ .+.++++|++|++++|.|..++ .+..+++|+++++++|. ...++ +++++++|+.++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~-~~~i~-~l~~l~~L~~l~  113 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLD  113 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEE
T ss_pred             HHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccc-ccccccccccccccccc-ccccc-cccccccccccc
Confidence            36788899999999888884 6888999999999999888874 38888899999998875 44443 578888899988


Q ss_pred             cCCCC
Q 002284          166 NSNTD  170 (943)
Q Consensus       166 l~~n~  170 (943)
                      ++++.
T Consensus       114 l~~~~  118 (227)
T d1h6ua2         114 LTSTQ  118 (227)
T ss_dssp             CTTSC
T ss_pred             ccccc
Confidence            88876

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.7e-14  Score=145.06  Aligned_cols=185  Identities=17%  Similarity=0.209  Sum_probs=106.7

Q ss_pred             CCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCccccc-CcCCCCCCceEEeccCcCccccccccCccccccc
Q 002284          562 PSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIA-GVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRH  640 (943)
Q Consensus       562 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~  640 (943)
                      +.+|++|++++|.........+ +..+++|++|++++|+...... .....++|++|++++|..++...    .......
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l-~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~----l~~l~~~  119 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGI-LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA----LQTLLSS  119 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHH-HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH----HHHHHHH
T ss_pred             CCCCCEEECCCCccCHHHHHHH-HHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccc----cchhhHH
Confidence            4567777777765332222221 4577888888888886543221 12334678888888887765321    1122246


Q ss_pred             CCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCC-c--hhhHhhhcccccccEEEeeccCCcc-
Q 002284          641 TSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSK-L--ESIVERLDNKISLEVIEIVSCENLK-  716 (943)
Q Consensus       641 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~-l--~~~~~~~~~l~~L~~L~l~~~~~~~-  716 (943)
                      +++|++|++++|..++.-    ....     .....++.|+.|++++|.. +  ..+.....++++|++|++++|..++ 
T Consensus       120 ~~~L~~L~ls~c~~~~~~----~~~~-----~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd  190 (284)
T d2astb2         120 CSRLDELNLSWCFDFTEK----HVQV-----AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN  190 (284)
T ss_dssp             CTTCCEEECCCCTTCCHH----HHHH-----HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG
T ss_pred             HHhccccccccccccccc----cchh-----hhcccccccchhhhcccccccccccccccccccccccccccccccCCCc
Confidence            778888888888766532    1100     1122235688888877632 2  2344445667777777777765443 


Q ss_pred             cccccccCCCCccEEeccCCCCCcc-cCcCCccccccceeeeccc
Q 002284          717 MLPHGLHKLWHLQEIDIQDCENLVS-FPEGGLLSAKLKRLVIYGC  760 (943)
Q Consensus       717 ~~p~~~~~l~~L~~L~l~~~~~l~~-~p~~~~~l~~L~~L~l~~~  760 (943)
                      ..+..+.++++|++|++++|..++. ....+..+++|+.|++++|
T Consensus       191 ~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         191 DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            3445566677777777777755432 2223445566666666665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=8.4e-13  Score=130.29  Aligned_cols=100  Identities=15%  Similarity=0.090  Sum_probs=45.5

Q ss_pred             CccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCCCCCccEEEEecCCCCCcCccccccCCCCCcc
Q 002284          513 GLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLE  592 (943)
Q Consensus       513 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~  592 (943)
                      ...+.++.+.++++......  .+...++|++|++++|.. ..++....+++|+.|++++|. ++.++.   ++++++|+
T Consensus       126 ~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~-~~~~~l~~l~~L~~L~Ls~n~-l~~l~~---l~~l~~L~  198 (227)
T d1h6ua2         126 AGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQV-SDLTPLANLSKLTTLKADDNK-ISDISP---LASLPNLI  198 (227)
T ss_dssp             TTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSC-CCCCGG---GGGCTTCC
T ss_pred             ccccchhhhhchhhhhchhh--hhcccccccccccccccc-ccchhhcccccceecccCCCc-cCCChh---hcCCCCCC
Confidence            34444555555444332211  234445555555555532 222222334555555555554 333332   23455666


Q ss_pred             EEEeecCCCcccccCcCCCCCCceEEec
Q 002284          593 ILDIRHCHLLTYIAGVQLPPSLKQLEIY  620 (943)
Q Consensus       593 ~L~l~~n~~~~~~~~~~~~~~L~~L~l~  620 (943)
                      +|++++|+ ++.++.....++|+.|+++
T Consensus       199 ~L~Ls~N~-lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         199 EVHLKNNQ-ISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             EEECTTSC-CCBCGGGTTCTTCCEEEEE
T ss_pred             EEECcCCc-CCCCcccccCCCCCEEEee
Confidence            66666654 3334434444555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=4.1e-13  Score=117.03  Aligned_cols=93  Identities=24%  Similarity=0.274  Sum_probs=45.9

Q ss_pred             cEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEcCCCCC
Q 002284           92 RVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDS  171 (943)
Q Consensus        92 ~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~  171 (943)
                      |+|||++|+++.+| .++++++|++|++++|.|+.+|+.++.+++|++|++++|. +..+| +++++++|++|++++|. 
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~-~~~~l~~L~~L~l~~N~-   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNR-   76 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSC-
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccccc-ccccC-ccccccccCeEECCCCc-
Confidence            44555555555544 2455555555555555555555555555555555555553 33333 25555555555555555 


Q ss_pred             Cccccc--ccccccccccc
Q 002284          172 LEEMPL--GIGKLTCLLTL  188 (943)
Q Consensus       172 ~~~~p~--~~~~L~~L~~L  188 (943)
                      +..+|.  .++.+++|+.|
T Consensus        77 i~~~~~~~~l~~~~~L~~L   95 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLL   95 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEE
T ss_pred             cCCCCCchhhcCCCCCCEE
Confidence            333332  24444444444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=6.1e-14  Score=143.45  Aligned_cols=183  Identities=12%  Similarity=0.049  Sum_probs=101.7

Q ss_pred             ccccccEEEeeccCCccc-ccccccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccC--CCcCCCCCCC
Q 002284          700 NKISLEVIEIVSCENLKM-LPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEAL--PEGMHNLSSL  776 (943)
Q Consensus       700 ~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~--p~~~~~l~~L  776 (943)
                      ...+|++||+++|.+... ++..+.++++|++|++++|+.....+..+..+++|++|++++|..++..  ..-+..+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            445677777777765433 3444566777777777777544444455555677777777777655421  1122456777


Q ss_pred             CceeecCCCCCcccc--CCC-CCCCCcceEEecCCcc-hhccccccCCCCCCCccEEEecCCCCcCcccCcccccccCCC
Q 002284          777 QYLTIGGVPSLLCFT--EDG-LFPTNLHSLEIDGMKI-WKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTL  852 (943)
Q Consensus       777 ~~L~l~~~~~l~~~~--~~~-~~~~~L~~L~l~~c~~-l~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~  852 (943)
                      ++|++++|..+..-.  ... ...++|+.|++++|.. +........+..+++|++|++++| ..+   .++..... ..
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~-~~i---td~~~~~l-~~  198 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS-VML---KNDCFQEF-FQ  198 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC-TTC---CGGGGGGG-GG
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccc-cCC---Cchhhhhh-cc
Confidence            777777776653211  100 1135677777777642 332222223355677777777775 222   22221111 13


Q ss_pred             CCCccEEEeecCCCCcccc--cccCCCCCCeEeecCC
Q 002284          853 PACLTQLEIFNFPNLERLS--SSICDQNLTSLKLTNC  887 (943)
Q Consensus       853 ~~~L~~L~l~~~~~l~~l~--~~~~~~~L~~L~l~~C  887 (943)
                      +++|++|++.+|++++.-.  ....+++|++|++++|
T Consensus       199 ~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         199 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            4667777777776665321  1125667777777776

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.4e-12  Score=126.68  Aligned_cols=37  Identities=22%  Similarity=0.109  Sum_probs=20.7

Q ss_pred             cccCCCCccEEeccCCCCCcccCcC-Cccccccceeeec
Q 002284          721 GLHKLWHLQEIDIQDCENLVSFPEG-GLLSAKLKRLVIY  758 (943)
Q Consensus       721 ~~~~l~~L~~L~l~~~~~l~~~p~~-~~~l~~L~~L~l~  758 (943)
                      .|.++++|++|++++|+ ++.+|.. +..+++|+.+++.
T Consensus       196 ~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         196 VFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             TTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEESSSEE
T ss_pred             HhcCCCCCCEEECCCCc-CCccCHHHHcCCcccccCcCC
Confidence            45666777777777763 4555543 3334445544443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.33  E-value=2.7e-12  Score=124.50  Aligned_cols=101  Identities=17%  Similarity=0.189  Sum_probs=47.6

Q ss_pred             cCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCCCCCccEEEEecCCCCCcCccccccCCCCCc
Q 002284          512 FGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSL  591 (943)
Q Consensus       512 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L  591 (943)
                      +..+++|+.|++++|... .++ .+..++.++.+++++|. +...+....+++|+++++++|.. ..++.   +.++++|
T Consensus       108 l~~l~~L~~L~l~~~~~~-~~~-~l~~l~~l~~l~~~~n~-l~~~~~~~~l~~L~~l~l~~n~l-~~i~~---l~~l~~L  180 (210)
T d1h6ta2         108 LKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQI-SDIVP---LAGLTKL  180 (210)
T ss_dssp             GTTCTTCCEEECTTSCCC-CCG-GGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCC-CCCGG---GTTCTTC
T ss_pred             cccccccccccccccccc-ccc-ccccccccccccccccc-ccccccccccccccccccccccc-ccccc---ccCCCCC
Confidence            444555555555555332 122 34445555555555553 22233233345555555555542 23322   2355666


Q ss_pred             cEEEeecCCCcccccCcCCCCCCceEEec
Q 002284          592 EILDIRHCHLLTYIAGVQLPPSLKQLEIY  620 (943)
Q Consensus       592 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~  620 (943)
                      ++|++++|++ +.++....+++|+.|+++
T Consensus       181 ~~L~Ls~N~i-~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         181 QNLYLSKNHI-SDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             CEEECCSSCC-CBCGGGTTCTTCSEEEEE
T ss_pred             CEEECCCCCC-CCChhhcCCCCCCEEEcc
Confidence            6666666543 334444444555655554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.32  E-value=4.8e-12  Score=121.54  Aligned_cols=35  Identities=17%  Similarity=0.089  Sum_probs=14.2

Q ss_pred             CCccceEEeccCCceeeeccCcccchhhhcccccc
Q 002284          414 LPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQM  448 (943)
Q Consensus       414 l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ls~n~  448 (943)
                      ++++++|++++|......++..++++++|++++|.
T Consensus        39 l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~   73 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ   73 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC
T ss_pred             hcCCCEEECCCCCCCCccccccCCCcCcCcccccc
Confidence            34455555555443333333333333333333333

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.8e-12  Score=119.01  Aligned_cols=130  Identities=16%  Similarity=0.052  Sum_probs=101.8

Q ss_pred             ccccccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchh-h
Q 002284           53 EDLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPES-V  131 (943)
Q Consensus        53 ~~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~-i  131 (943)
                      +.+.+..++|.|.+.++      . ...++.-+..+++|++|+|++|.|+.++ .|..+++|++|++++|+|+.+|.. +
T Consensus        12 ~~~~n~~~lr~L~L~~n------~-I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~   83 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGY------K-IPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLD   83 (162)
T ss_dssp             CEEECTTSCEEEECTTS------C-CCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred             HhccCcCcCcEEECCCC------C-CCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccc
Confidence            45567788999977554      3 3455543348999999999999999985 589999999999999999999754 5


Q ss_pred             hhccccceeecCCCccccccc--HHHhccccCceEEcCCCCCCccccc----cccccccccccCceE
Q 002284          132 NKLYNLHTLLLEGCRELKKKC--ADMGNLIKLHHLNNSNTDSLEEMPL----GIGKLTCLLTLCNFV  192 (943)
Q Consensus       132 ~~L~~L~~L~L~~n~~~~~~p--~~~~~L~~L~~L~l~~n~~~~~~p~----~~~~L~~L~~L~~~~  192 (943)
                      ..+++|++|++++|. +..++  ..+..+++|++|++++|. +...|.    .++.+++|+.|+...
T Consensus        84 ~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~~  148 (162)
T d1a9na_          84 QALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQK  148 (162)
T ss_dssp             HHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred             ccccccccceecccc-ccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCCC
Confidence            789999999999986 44444  358889999999999998 666664    377788888886443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.30  E-value=2.5e-12  Score=111.95  Aligned_cols=99  Identities=21%  Similarity=0.244  Sum_probs=83.1

Q ss_pred             CCCcchhccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCccccccc
Q 002284           73 RPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKC  152 (943)
Q Consensus        73 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p  152 (943)
                      ++|+++ .++ .+.++++|++|++++|.++.+|++|+.+++|++|++++|.|+.+| .++++++|++|++++|. +..+|
T Consensus         6 s~n~l~-~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~-i~~~~   81 (124)
T d1dcea3           6 AHKDLT-VLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR-LQQSA   81 (124)
T ss_dssp             TTSCCS-SCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC-CCSSS
T ss_pred             CCCCCC-CCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCc-cCCCC
Confidence            455554 443 566999999999999999999989999999999999999999996 58999999999999997 44444


Q ss_pred             --HHHhccccCceEEcCCCCCCcccc
Q 002284          153 --ADMGNLIKLHHLNNSNTDSLEEMP  176 (943)
Q Consensus       153 --~~~~~L~~L~~L~l~~n~~~~~~p  176 (943)
                        ..++.+++|++|++++|. +...+
T Consensus        82 ~~~~l~~~~~L~~L~l~~N~-i~~~~  106 (124)
T d1dcea3          82 AIQPLVSCPRLVLLNLQGNS-LCQEE  106 (124)
T ss_dssp             TTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred             CchhhcCCCCCCEEECCCCc-CCcCc
Confidence              468999999999999998 54443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.4e-12  Score=119.76  Aligned_cols=103  Identities=26%  Similarity=0.268  Sum_probs=85.4

Q ss_pred             hhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCce
Q 002284           84 RLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHH  163 (943)
Q Consensus        84 ~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~  163 (943)
                      .+.+...+|.|||++|+|+.+|..+..+++|++|+|++|.|+.++ .|..+++|++|++++|.+....+..+..+++|++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccccccccc
Confidence            345888999999999999999877788999999999999999995 5899999999999999744443445788999999


Q ss_pred             EEcCCCCCCccccc--ccccccccccc
Q 002284          164 LNNSNTDSLEEMPL--GIGKLTCLLTL  188 (943)
Q Consensus       164 L~l~~n~~~~~~p~--~~~~L~~L~~L  188 (943)
                      |++++|. +..++.  .+..+++|++|
T Consensus        92 L~L~~N~-i~~~~~l~~l~~l~~L~~L  117 (162)
T d1a9na_          92 LILTNNS-LVELGDLDPLASLKSLTYL  117 (162)
T ss_dssp             EECCSCC-CCCGGGGGGGGGCTTCCEE
T ss_pred             ceecccc-ccccccccccccccccchh
Confidence            9999998 666653  35666666665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.2e-13  Score=149.96  Aligned_cols=105  Identities=18%  Similarity=0.211  Sum_probs=66.8

Q ss_pred             cccEEeecccCCCCCCcchhccchhhh-ccCcccEEEecCcccc-----ccCccccCCCCCceeecCCCccccc-----c
Q 002284           60 HLRTLLPVTLLSSRPGYLARSILPRLL-KLQRLRVFSLRGYLIS-----EVPDSIGDLSYLRYLNLSGTQIRTL-----P  128 (943)
Q Consensus        60 ~Lr~L~~~~~~~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~-----~lp~~~~~l~~L~~L~Ls~n~i~~l-----p  128 (943)
                      +|++|.+.      +++++......++ .++++|+|+|++|.++     .++..+..+++|++|||++|.|+..     .
T Consensus         3 ~l~~ld~~------~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~   76 (460)
T d1z7xw1           3 DIQSLDIQ------CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL   76 (460)
T ss_dssp             EEEEEEEE------SCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             CCCEEEee------CCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHH
Confidence            45556543      3345544444444 7788888888888765     3445567778888888888877532     2


Q ss_pred             hhhh-hccccceeecCCCcccc----cccHHHhccccCceEEcCCCC
Q 002284          129 ESVN-KLYNLHTLLLEGCRELK----KKCADMGNLIKLHHLNNSNTD  170 (943)
Q Consensus       129 ~~i~-~L~~L~~L~L~~n~~~~----~~p~~~~~L~~L~~L~l~~n~  170 (943)
                      ..+. ...+|++|++++|.+..    .++..+..+++|++|++++|.
T Consensus        77 ~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          77 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHhcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence            2221 22468888888876432    244556777888888888877

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.17  E-value=1.6e-11  Score=116.95  Aligned_cols=96  Identities=21%  Similarity=0.225  Sum_probs=50.8

Q ss_pred             Ccchhccchhhh-ccCcccEEEecCcccccc-CccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccc
Q 002284           75 GYLARSILPRLL-KLQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKK  151 (943)
Q Consensus        75 ~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~  151 (943)
                      |.+...++...| ++++|+.|+|++|.+..+ +..|..+++|++|+|++|+|+.+| .+|.++++|++|+|++|.+....
T Consensus        39 N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~  118 (192)
T d1w8aa_          39 NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM  118 (192)
T ss_dssp             CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC
T ss_pred             CCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccC
Confidence            344444444444 555555555555555544 344555555555555555555553 34555555555555555433333


Q ss_pred             cHHHhccccCceEEcCCCC
Q 002284          152 CADMGNLIKLHHLNNSNTD  170 (943)
Q Consensus       152 p~~~~~L~~L~~L~l~~n~  170 (943)
                      |..|..+++|++|++++|.
T Consensus       119 ~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         119 PGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             TTSSTTCTTCCEEECTTCC
T ss_pred             HHHhcCCcccccccccccc
Confidence            3345555555555555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=5.8e-13  Score=147.87  Aligned_cols=101  Identities=13%  Similarity=0.075  Sum_probs=74.8

Q ss_pred             CcccEEEecCcccccc--CccccCCCCCceeecCCCccc-----ccchhhhhccccceeecCCCcccccccHHHh-----
Q 002284           89 QRLRVFSLRGYLISEV--PDSIGDLSYLRYLNLSGTQIR-----TLPESVNKLYNLHTLLLEGCRELKKKCADMG-----  156 (943)
Q Consensus        89 ~~L~~L~L~~n~i~~l--p~~~~~l~~L~~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~-----  156 (943)
                      ..|++||+++++++..  ..-+..++++|+|+|++|.|+     .|+..+..+++|++|||++|.+...-...+.     
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            4689999999998763  344677899999999999887     4466778999999999999964322112222     


Q ss_pred             ccccCceEEcCCCCCCcc-----ccccccccccccccCc
Q 002284          157 NLIKLHHLNNSNTDSLEE-----MPLGIGKLTCLLTLCN  190 (943)
Q Consensus       157 ~L~~L~~L~l~~n~~~~~-----~p~~~~~L~~L~~L~~  190 (943)
                      ...+|++|++++|. ++.     ++..+..+++|++|+.
T Consensus        82 ~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L  119 (460)
T d1z7xw1          82 PSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHL  119 (460)
T ss_dssp             TTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEEC
T ss_pred             CCCCCCEEECCCCC-ccccccccccchhhcccccccccc
Confidence            23579999999998 443     3445677888888754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.14  E-value=2.1e-11  Score=116.17  Aligned_cols=142  Identities=15%  Similarity=0.023  Sum_probs=104.2

Q ss_pred             ccccCCceeEEEEEeccCccccccccccccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCccccccC-cc
Q 002284           29 QQSFSRNLHHLSYIRGDYDGVKRFEDLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVP-DS  107 (943)
Q Consensus        29 ~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp-~~  107 (943)
                      +..++..+++|.+..+.+........|.++++|+.|.+.++      .+....+..+..+++|++|+|++|+++.+| .+
T Consensus        24 P~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N------~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~   97 (192)
T d1w8aa_          24 PRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN------QLTGIEPNAFEGASHIQELQLGENKIKEISNKM   97 (192)
T ss_dssp             CSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS------CCCCBCTTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred             CCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeecccc------ccccccccccccccccceeeeccccccccCHHH
Confidence            34567889999999988765444466788999999987543      445444444559999999999999999994 67


Q ss_pred             ccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHhccccCceEEcCCCCCCccccc
Q 002284          108 IGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPL  177 (943)
Q Consensus       108 ~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~~p~  177 (943)
                      |.++++|++|+|++|+|+.+| .+|..+++|++|+|++|.+....+.. .-...++.+.+..+......|.
T Consensus        98 F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p~  167 (192)
T d1w8aa_          98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSST
T ss_pred             HhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCCCh
Confidence            899999999999999999995 57899999999999999754332211 1112344555555543334443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.00  E-value=1e-11  Score=118.37  Aligned_cols=104  Identities=19%  Similarity=0.231  Sum_probs=66.2

Q ss_pred             cchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhcccc
Q 002284           81 ILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIK  160 (943)
Q Consensus        81 ~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~  160 (943)
                      ++.++..+++|++|+|++|.|+.++ .+..+++|++|+|++|.|+.+|..+..+.+|++|++++|. +..+ +.+.++++
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~-i~~l-~~~~~l~~  116 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASL-SGIEKLVN  116 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEE-CCCH-HHHHHHHH
T ss_pred             hhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccccc-cccc-cccccccc
Confidence            3445556777777777777777764 4677777777777777777776555566677777777764 3333 34667777


Q ss_pred             CceEEcCCCCCCccccc--ccccccccccc
Q 002284          161 LHHLNNSNTDSLEEMPL--GIGKLTCLLTL  188 (943)
Q Consensus       161 L~~L~l~~n~~~~~~p~--~~~~L~~L~~L  188 (943)
                      |++|++++|. +..++.  .++.+++|+.|
T Consensus       117 L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L  145 (198)
T d1m9la_         117 LRVLYMSNNK-ITNWGEIDKLAALDKLEDL  145 (198)
T ss_dssp             SSEEEESEEE-CCCHHHHHHHTTTTTCSEE
T ss_pred             ccccccccch-hccccccccccCCCcccee
Confidence            7777777776 444432  34455555544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.98  E-value=1.4e-11  Score=117.42  Aligned_cols=125  Identities=24%  Similarity=0.248  Sum_probs=98.3

Q ss_pred             cccccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhh
Q 002284           54 DLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNK  133 (943)
Q Consensus        54 ~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~  133 (943)
                      .+..+++|+.|.+.+      |.+. .++ .+..+++|++|+|++|.++.+|..+..+++|++|++++|+|+.++ .+..
T Consensus        43 sl~~L~~L~~L~Ls~------n~I~-~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~  113 (198)
T d1m9la_          43 TLSTLKACKHLALST------NNIE-KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK  113 (198)
T ss_dssp             HHHHTTTCCEEECSE------EEES-CCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHH
T ss_pred             HHhcccccceeECcc------cCCC-Ccc-cccCCccccChhhcccccccccccccccccccccccccccccccc-cccc
Confidence            566789999997754      3443 453 566999999999999999999877777789999999999999984 5899


Q ss_pred             ccccceeecCCCccccccc--HHHhccccCceEEcCCCCCCcccccc-----------ccccccccccC
Q 002284          134 LYNLHTLLLEGCRELKKKC--ADMGNLIKLHHLNNSNTDSLEEMPLG-----------IGKLTCLLTLC  189 (943)
Q Consensus       134 L~~L~~L~L~~n~~~~~~p--~~~~~L~~L~~L~l~~n~~~~~~p~~-----------~~~L~~L~~L~  189 (943)
                      +++|++|++++|. +..++  ..++.+++|++|++++|. +...+..           +..+++|+.|+
T Consensus       114 l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         114 LVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSH-HHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccch-hccccccccccCCCccceeecCCCc-cccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            9999999999986 55554  468999999999999998 4333221           44566666664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1e-09  Score=99.49  Aligned_cols=91  Identities=18%  Similarity=0.153  Sum_probs=70.8

Q ss_pred             hccchhhhccCcccEEEecCcc-ccccC-ccccCCCCCceeecCCCccccc-chhhhhccccceeecCCCcccccccHHH
Q 002284           79 RSILPRLLKLQRLRVFSLRGYL-ISEVP-DSIGDLSYLRYLNLSGTQIRTL-PESVNKLYNLHTLLLEGCRELKKKCADM  155 (943)
Q Consensus        79 ~~~~~~~~~l~~L~~L~L~~n~-i~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p~~~  155 (943)
                      ..+|..+..+++|+.|++++|+ ++.++ .+|.++++|++|+|++|+|+.| |.+|..+++|++|+|++|. +..+|..+
T Consensus        21 ~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~   99 (156)
T d2ifga3          21 LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKT   99 (156)
T ss_dssp             CTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTT
T ss_pred             ccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC-CcccChhh
Confidence            4556776688888888887664 88884 5688888888888888888888 4678888888888888886 55666664


Q ss_pred             hccccCceEEcCCCC
Q 002284          156 GNLIKLHHLNNSNTD  170 (943)
Q Consensus       156 ~~L~~L~~L~l~~n~  170 (943)
                      ....+|++|++++|.
T Consensus       100 ~~~~~l~~L~L~~Np  114 (156)
T d2ifga3         100 VQGLSLQELVLSGNP  114 (156)
T ss_dssp             TCSCCCCEEECCSSC
T ss_pred             hccccccccccCCCc
Confidence            444578888888887

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.1e-09  Score=99.21  Aligned_cols=103  Identities=14%  Similarity=-0.007  Sum_probs=86.6

Q ss_pred             cCcccEEEecCccccccCccccCCCCCceeecCCC-cccccc-hhhhhccccceeecCCCcccccccHHHhccccCceEE
Q 002284           88 LQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGT-QIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLN  165 (943)
Q Consensus        88 l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n-~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~  165 (943)
                      .....+++.+++.+...|..+..+++|++|++++| .|+.++ .+|.++++|+.|++++|.+....|..|..+++|++|+
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34456789999999999999999999999999876 599996 6799999999999999986555567799999999999


Q ss_pred             cCCCCCCccccccccccccccccCce
Q 002284          166 NSNTDSLEEMPLGIGKLTCLLTLCNF  191 (943)
Q Consensus       166 l~~n~~~~~~p~~~~~L~~L~~L~~~  191 (943)
                      +++|+ ++.+|.++....+|+.|++.
T Consensus        87 Ls~N~-l~~l~~~~~~~~~l~~L~L~  111 (156)
T d2ifga3          87 LSFNA-LESLSWKTVQGLSLQELVLS  111 (156)
T ss_dssp             CCSSC-CSCCCSTTTCSCCCCEEECC
T ss_pred             ccCCC-CcccChhhhccccccccccC
Confidence            99999 88898875555567777443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.62  E-value=4.8e-10  Score=118.08  Aligned_cols=89  Identities=19%  Similarity=0.158  Sum_probs=60.2

Q ss_pred             chhhhccCcccEEEecCccccc-----cCccccCCCCCceeecCCCccccc-----------chhhhhccccceeecCCC
Q 002284           82 LPRLLKLQRLRVFSLRGYLISE-----VPDSIGDLSYLRYLNLSGTQIRTL-----------PESVNKLYNLHTLLLEGC  145 (943)
Q Consensus        82 ~~~~~~l~~L~~L~L~~n~i~~-----lp~~~~~l~~L~~L~Ls~n~i~~l-----------p~~i~~L~~L~~L~L~~n  145 (943)
                      ...+.....|+.|+|++|.++.     +-..+...++|+.|+++++.+..+           ...+...++|++|++++|
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            3444467888888888887643     345567778888888887654322           223445678888888888


Q ss_pred             cccc----cccHHHhccccCceEEcCCCC
Q 002284          146 RELK----KKCADMGNLIKLHHLNNSNTD  170 (943)
Q Consensus       146 ~~~~----~~p~~~~~L~~L~~L~l~~n~  170 (943)
                      .+..    .+...+...++|++|++++|.
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             ccccccccchhhhhcccccchheeccccc
Confidence            6433    244456677888888888876

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.48  E-value=1.4e-08  Score=106.56  Aligned_cols=111  Identities=12%  Similarity=0.094  Sum_probs=71.2

Q ss_pred             cccccccccEEeecccCCCCCCcchhccc----hhhhccCcccEEEecCccccc-----------cCccccCCCCCceee
Q 002284           54 DLYDIQHLRTLLPVTLLSSRPGYLARSIL----PRLLKLQRLRVFSLRGYLISE-----------VPDSIGDLSYLRYLN  118 (943)
Q Consensus        54 ~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~----~~~~~l~~L~~L~L~~n~i~~-----------lp~~~~~l~~L~~L~  118 (943)
                      .+.....++.|.+.      +|.+...-.    ..+...+.|+.|+++++....           +...+...++|++|+
T Consensus        26 ~L~~~~~l~~L~Ls------~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~   99 (344)
T d2ca6a1          26 VLLEDDSVKEIVLS------GNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR   99 (344)
T ss_dssp             HHHHCSCCCEEECT------TSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHhhCCCCCEEECc------CCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccc
Confidence            34557778888654      334433222    223367899999998765432           224456778899999


Q ss_pred             cCCCcccc-----cchhhhhccccceeecCCCcccccccHH-------------HhccccCceEEcCCCC
Q 002284          119 LSGTQIRT-----LPESVNKLYNLHTLLLEGCRELKKKCAD-------------MGNLIKLHHLNNSNTD  170 (943)
Q Consensus       119 Ls~n~i~~-----lp~~i~~L~~L~~L~L~~n~~~~~~p~~-------------~~~L~~L~~L~l~~n~  170 (943)
                      |++|.+..     +...+...++|++|++++|.+...-...             ....+.|+.+++++|.
T Consensus       100 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1         100 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             ccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            99998764     4455677889999999988642211111             1345678888888776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=5.6e-07  Score=81.69  Aligned_cols=79  Identities=23%  Similarity=0.246  Sum_probs=46.9

Q ss_pred             ccCcccEEEecCccccccC---ccccCCCCCceeecCCCcccccch-hhhhccccceeecCCCccccccc-------HHH
Q 002284           87 KLQRLRVFSLRGYLISEVP---DSIGDLSYLRYLNLSGTQIRTLPE-SVNKLYNLHTLLLEGCRELKKKC-------ADM  155 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~lp---~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~n~~~~~~p-------~~~  155 (943)
                      .++.|++|+|++|+|+.++   ..+..+++|++|+|++|.|+.+++ .+.+..+|+.|++++|.+.....       ..+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            6777777777777766552   345566777777777777776653 23334456777777765433221       124


Q ss_pred             hccccCceEE
Q 002284          156 GNLIKLHHLN  165 (943)
Q Consensus       156 ~~L~~L~~L~  165 (943)
                      ..+++|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            4566666664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=3.4e-07  Score=83.20  Aligned_cols=105  Identities=23%  Similarity=0.139  Sum_probs=74.0

Q ss_pred             ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccc---hhhhhccccceeecCCCcccccccH-HHhccccCc
Q 002284           87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLP---ESVNKLYNLHTLLLEGCRELKKKCA-DMGNLIKLH  162 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp---~~i~~L~~L~~L~L~~n~~~~~~p~-~~~~L~~L~  162 (943)
                      .+..+..+....+....++..+..+++|++|+|++|+|+.++   ..+..+++|++|++++|. +..+++ .+.+..+|+
T Consensus        40 ~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~  118 (162)
T d1koha1          40 AQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLE  118 (162)
T ss_dssp             TTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCS
T ss_pred             hccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccc
Confidence            444444455555555555555578999999999999999773   457899999999999997 454443 445556899


Q ss_pred             eEEcCCCCCCccccc-------cccccccccccCceE
Q 002284          163 HLNNSNTDSLEEMPL-------GIGKLTCLLTLCNFV  192 (943)
Q Consensus       163 ~L~l~~n~~~~~~p~-------~~~~L~~L~~L~~~~  192 (943)
                      .|++++|.+......       .+..+++|+.|+...
T Consensus       119 ~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LDg~~  155 (162)
T d1koha1         119 ELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHE  155 (162)
T ss_dssp             SCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEETTEE
T ss_pred             eeecCCCCcCcCcccchhHHHHHHHHCCCCCEECcCC
Confidence            999999984433321       255678888886443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.74  E-value=0.00064  Score=61.12  Aligned_cols=84  Identities=18%  Similarity=0.144  Sum_probs=44.6

Q ss_pred             ccCcccEEEecCccccc-----cCccccCCCCCceeecCCCcccc-----cchhhhhccccceeecCCCccc-------c
Q 002284           87 KLQRLRVFSLRGYLISE-----VPDSIGDLSYLRYLNLSGTQIRT-----LPESVNKLYNLHTLLLEGCREL-------K  149 (943)
Q Consensus        87 ~l~~L~~L~L~~n~i~~-----lp~~~~~l~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~n~~~-------~  149 (943)
                      ..+.|++|+|++|.++.     +...+...+.|++|+|++|.|..     +-.++..-+.|++|++++|...       .
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~  121 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM  121 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred             hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHH
Confidence            45566666666666542     22344455666666666666652     2233444556666666655311       1


Q ss_pred             cccHHHhccccCceEEcCCCC
Q 002284          150 KKCADMGNLIKLHHLNNSNTD  170 (943)
Q Consensus       150 ~~p~~~~~L~~L~~L~l~~n~  170 (943)
                      .+...+..-+.|+.|+++.+.
T Consensus       122 ~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         122 DMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhCCCccEeeCcCCC
Confidence            123334455666666665543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.30  E-value=0.0018  Score=58.02  Aligned_cols=84  Identities=13%  Similarity=0.088  Sum_probs=63.3

Q ss_pred             ccCcccEEEecCc-cccc-----cCccccCCCCCceeecCCCccc-----ccchhhhhccccceeecCCCccccc----c
Q 002284           87 KLQRLRVFSLRGY-LISE-----VPDSIGDLSYLRYLNLSGTQIR-----TLPESVNKLYNLHTLLLEGCRELKK----K  151 (943)
Q Consensus        87 ~l~~L~~L~L~~n-~i~~-----lp~~~~~l~~L~~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~n~~~~~----~  151 (943)
                      +.+.|+.|+|+++ .++.     +-..+...++|++|+|++|.+.     .+...+...+.|++|++++|.+...    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            5689999999874 3542     3356777889999999999887     3345667788999999999964432    2


Q ss_pred             cHHHhccccCceEEcCCCC
Q 002284          152 CADMGNLIKLHHLNNSNTD  170 (943)
Q Consensus       152 p~~~~~L~~L~~L~l~~n~  170 (943)
                      -..+..-+.|++|++++|.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHhCCcCCEEECCCCc
Confidence            3346667889999999886

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.78  E-value=0.0017  Score=58.32  Aligned_cols=86  Identities=17%  Similarity=0.188  Sum_probs=53.4

Q ss_pred             chhhh-ccCcccEEEecCc-cccc-----cCccccCCCCCceeecCCCccc-----ccchhhhhccccceeecCCCcccc
Q 002284           82 LPRLL-KLQRLRVFSLRGY-LISE-----VPDSIGDLSYLRYLNLSGTQIR-----TLPESVNKLYNLHTLLLEGCRELK  149 (943)
Q Consensus        82 ~~~~~-~l~~L~~L~L~~n-~i~~-----lp~~~~~l~~L~~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~n~~~~  149 (943)
                      ...+. +.+.|+.|+|+++ .++.     +-.++...++|++|+|++|.+.     .+-..+...+.++.+++++|....
T Consensus         9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~   88 (166)
T d1io0a_           9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG   88 (166)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccc
Confidence            33444 6788888888863 3432     3345667788888888888775     233455667778888887775332


Q ss_pred             c----ccHHHhccccCceEEcC
Q 002284          150 K----KCADMGNLIKLHHLNNS  167 (943)
Q Consensus       150 ~----~p~~~~~L~~L~~L~l~  167 (943)
                      .    +...+...++|+.+++.
T Consensus        89 ~g~~~l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          89 SGILALVEALQSNTSLIELRID  110 (166)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECC
T ss_pred             hhHHHHHHHHHhCccccEEeec
Confidence            2    22345556667765554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.56  E-value=0.0053  Score=54.83  Aligned_cols=109  Identities=14%  Similarity=0.101  Sum_probs=74.7

Q ss_pred             ccccccEEeecccCCCCCCcchhc----cchhhhccCcccEEEecCccccc-----cCccccCCCCCceeecCCCccc--
Q 002284           57 DIQHLRTLLPVTLLSSRPGYLARS----ILPRLLKLQRLRVFSLRGYLISE-----VPDSIGDLSYLRYLNLSGTQIR--  125 (943)
Q Consensus        57 ~~~~Lr~L~~~~~~~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~i~~-----lp~~~~~l~~L~~L~Ls~n~i~--  125 (943)
                      +.+.|+.|.+.+..     .+...    +...+...++|+.|++++|.++.     +-..+...+.++++++++|.+.  
T Consensus        15 ~~~~L~~L~L~~~~-----~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          15 NDPDLEEVNLNNIM-----NIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             TCTTCCEEECTTCT-----TCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             cCCCCcEEEcCCCC-----CCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            56788888765432     22222    22333378899999999998753     3355677889999999999876  


Q ss_pred             ---ccchhhhhccccceeecC--CCccc----ccccHHHhccccCceEEcCCCC
Q 002284          126 ---TLPESVNKLYNLHTLLLE--GCREL----KKKCADMGNLIKLHHLNNSNTD  170 (943)
Q Consensus       126 ---~lp~~i~~L~~L~~L~L~--~n~~~----~~~p~~~~~L~~L~~L~l~~n~  170 (943)
                         .+-..+...+.|+.++|+  +|...    ..+...+.+.+.|++|++..+.
T Consensus        90 g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          90 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence               344667778889876664  44422    2345567788999999998765