Citrus Sinensis ID: 002408
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 927 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZSB5 | 923 | Ubiquitin carboxyl-termin | yes | no | 0.971 | 0.976 | 0.621 | 0.0 | |
| Q93Y01 | 910 | Ubiquitin carboxyl-termin | no | no | 0.970 | 0.989 | 0.623 | 0.0 | |
| Q9MAQ3 | 892 | Putative ubiquitin carbox | no | no | 0.929 | 0.966 | 0.609 | 0.0 | |
| O22207 | 924 | Ubiquitin carboxyl-termin | no | no | 0.954 | 0.957 | 0.488 | 0.0 | |
| Q9C585 | 871 | Ubiquitin carboxyl-termin | no | no | 0.843 | 0.897 | 0.467 | 0.0 | |
| B2GUZ1 | 961 | Ubiquitin carboxyl-termin | yes | no | 0.926 | 0.893 | 0.384 | 1e-159 | |
| P35123 | 962 | Ubiquitin carboxyl-termin | yes | no | 0.923 | 0.889 | 0.382 | 1e-158 | |
| Q9R085 | 952 | Ubiquitin carboxyl-termin | no | no | 0.906 | 0.882 | 0.365 | 1e-156 | |
| Q13107 | 963 | Ubiquitin carboxyl-termin | no | no | 0.934 | 0.899 | 0.381 | 1e-156 | |
| Q2HJE4 | 952 | Ubiquitin carboxyl-termin | yes | no | 0.881 | 0.858 | 0.368 | 1e-155 |
| >sp|Q9ZSB5|UBP10_ARATH Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana GN=UBP10 PE=2 SV=2 | Back alignment and function desciption |
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Score = 1145 bits (2962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/928 (62%), Positives = 719/928 (77%), Gaps = 27/928 (2%)
Query: 1 MTIRDSSVLMMENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERY 60
MTI +S M+ENG LP TP+EE++IV +L ++S+ +LK+GNLYF+IS RWY SW+ Y
Sbjct: 1 MTIPNSD-FMLENGVCDLPFTPEEEKRIVSELTSESEDNLKQGNLYFVISKRWYTSWQEY 59
Query: 61 VCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQ 120
V E S + S G SS+ A RPGPIDN DII++ S+ +D ++RR L EG+
Sbjct: 60 V---ENSANECS------TGESSE-APRPGPIDNHDIIES---DSDINDPQLRRLLVEGE 106
Query: 121 DYVLVPQQVWEKLFCWYKGGPALPRKMISEGIVNEK-RVEVFXLCLKLIDSRDNSQTVIR 179
DYVLVP+QVW++L WY GGP + RK+I +G VEV+ LCL L D RD S+TVIR
Sbjct: 107 DYVLVPKQVWKRLVEWYSGGPPIERKLICQGFYTRSYSVEVYPLCLMLTDGRDESRTVIR 166
Query: 180 LSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239
L K+AS R+LYEKVC + G+ QEKA IWDYF+K+++ +S ++L+++ L MDQDIL+
Sbjct: 167 LGKQASIRELYEKVCAMTGVPQEKAHIWDYFDKRKNGLLDPLSYKSLEESSLHMDQDILV 226
Query: 240 EVQ---VDNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGS 296
EV + +M STGN+LALVP+EPSRS +TIAGGP LSNGH+T F+ +P
Sbjct: 227 EVDGLSSSSQSAMSSTGNELALVPLEPSRSIVTIAGGPTLSNGHSTTSNFSLFP------ 280
Query: 297 TFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEI 356
DDG DS + KGEKGGLAGL NLGNTCFMNSALQCL HTP + +YFL DYSD+I
Sbjct: 281 RITSEDDGRDSLSILGKGEKGGLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDI 340
Query: 357 NTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLA 416
N +NPLGM GELA+AFGDLL+KLWSSGR AVAPRAFK KLARFAPQFSGYNQHDSQELLA
Sbjct: 341 NRDNPLGMCGELAIAFGDLLKKLWSSGRNAVAPRAFKTKLARFAPQFSGYNQHDSQELLA 400
Query: 417 FLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTL 476
FLLDGLHEDLN+VK+KPYIE+KDS RPD+EVA E W HKARNDS+IVDV QGQYKSTL
Sbjct: 401 FLLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQGQYKSTL 460
Query: 477 VCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLI 536
VCPVC K+SITFDPFMYL++PLPST+TR+MT+TVFY +GS LPMP+TV + K G +DLI
Sbjct: 461 VCPVCGKISITFDPFMYLSVPLPSTLTRSMTITVFYCDGSRLPMPYTVIVPKQGSIRDLI 520
Query: 537 LALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGG--KI 594
AL TACCL DE LLLAEVY+H+IFR+FE P + +S+IKDDEHIVAYR ++ G K
Sbjct: 521 TALGTACCLAEDESLLLAEVYDHKIFRYFEIPLDSLSAIKDDEHIVAYRLNQIPKGSRKA 580
Query: 595 KLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYSS 654
KLEI++ QE++ D ++GS+ KLFG P VTY+ E LSG DID +S LSPL + ++
Sbjct: 581 KLEILHGGQERAVLDSVRGSDVKLFGTPFVTYVNTEPLSGTDIDAVISGFLSPLHKVHAP 640
Query: 655 AKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKD 714
+K H G +NG L + + ++ S +T E+++ RELSF++ LTDER + KP+Q +
Sbjct: 641 SKIHNGSDNGHLADATVDQASGILSSPDT-EIDNASDRELSFRIFLTDERGLNIKPLQSE 699
Query: 715 SILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLT 774
S + PG +VL++W + HE YD SY+ DLP VHKT F+ KKTRQE+ISLFSCL+AFL
Sbjct: 700 SSISPGTVTRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTRQESISLFSCLEAFLA 759
Query: 775 EEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPIL 834
EEPLGPDDMW+CP CKEHRQA KKLDLW LPD+LVFHLKRF+YSRYLKNK+DTFVNFP+
Sbjct: 760 EEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVH 819
Query: 835 NLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSE 894
+LDLSKY+K+K+G+SY+Y+L+A+SNHYGGLGGGHYTAYAKLID+N+WYHFDDSHVS V+E
Sbjct: 820 DLDLSKYVKNKNGQSYLYELYAVSNHYGGLGGGHYTAYAKLIDDNKWYHFDDSHVSSVNE 879
Query: 895 GDIKTSAAYVLFYRRVKSKTKAEMAETS 922
+I+ SAAYVLFYRRV+S+T+ + AE S
Sbjct: 880 SEIRNSAAYVLFYRRVRSETETQTAEMS 907
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Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2 |
| >sp|Q93Y01|UBP9_ARATH Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana GN=UBP9 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9MAQ3|UBP11_ARATH Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis thaliana GN=UBP11 PE=3 SV=2 | Back alignment and function description |
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| >sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana GN=UBP5 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9C585|UBP8_ARATH Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana GN=UBP8 PE=1 SV=2 | Back alignment and function description |
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| >sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus GN=Usp4 PE=1 SV=1 | Back alignment and function description |
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| >sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q9R085|UBP15_RAT Ubiquitin carboxyl-terminal hydrolase 15 OS=Rattus norvegicus GN=Usp15 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q2HJE4|UBP15_BOVIN Ubiquitin carboxyl-terminal hydrolase 15 OS=Bos taurus GN=USP15 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 927 | ||||||
| 359473972 | 1013 | PREDICTED: ubiquitin carboxyl-terminal h | 0.993 | 0.909 | 0.708 | 0.0 | |
| 297742456 | 944 | unnamed protein product [Vitis vinifera] | 0.993 | 0.975 | 0.704 | 0.0 | |
| 255555787 | 938 | Ubiquitin carboxyl-terminal hydrolase, p | 0.991 | 0.979 | 0.680 | 0.0 | |
| 224117792 | 942 | predicted protein [Populus trichocarpa] | 0.983 | 0.968 | 0.673 | 0.0 | |
| 224056675 | 933 | predicted protein [Populus trichocarpa] | 0.975 | 0.968 | 0.670 | 0.0 | |
| 356576624 | 933 | PREDICTED: ubiquitin carboxyl-terminal h | 0.988 | 0.981 | 0.674 | 0.0 | |
| 356576622 | 928 | PREDICTED: ubiquitin carboxyl-terminal h | 0.982 | 0.981 | 0.674 | 0.0 | |
| 356535266 | 931 | PREDICTED: ubiquitin carboxyl-terminal h | 0.985 | 0.981 | 0.675 | 0.0 | |
| 449456269 | 915 | PREDICTED: ubiquitin carboxyl-terminal h | 0.975 | 0.987 | 0.678 | 0.0 | |
| 449507201 | 915 | PREDICTED: LOW QUALITY PROTEIN: ubiquiti | 0.975 | 0.987 | 0.678 | 0.0 |
| >gi|359473972|ref|XP_002279130.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 9-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1353 bits (3501), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 669/944 (70%), Positives = 783/944 (82%), Gaps = 23/944 (2%)
Query: 1 MTIRDSSVLMMENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERY 60
MTI DS MMENGGSCLP TP++E+QIV DL N+S+ LKEGNLY+++S RW+ SW+RY
Sbjct: 71 MTIADSG-FMMENGGSCLPYTPEQEKQIVDDLMNKSESSLKEGNLYYVVSNRWFTSWQRY 129
Query: 61 VC---GDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLE 117
+ G+ P ++S DS ++ V SK AERPGPIDNSDI+ NGN E DDLE+ R LE
Sbjct: 130 IGQGNGEYPINGHLS-DSQRLDAVPSKTAERPGPIDNSDIVLNGN-ECELDDLEILRTLE 187
Query: 118 EGQDYVLVPQQVWEKLFCWYKGGPALPRKMISEGIVNEK-RVEVFXLCLKLIDSRDNSQT 176
EG+DYVLVPQ+VWEKLF WYKGGPALPRKMIS+GI ++K VE++ LCLKL DSRDNSQ+
Sbjct: 188 EGRDYVLVPQEVWEKLFDWYKGGPALPRKMISQGITHKKFMVEIYRLCLKLTDSRDNSQS 247
Query: 177 VIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQD 236
VIRLSKKAS +LYE+VC L+ +EQEKARIWDYFNK R + L S+QTL+++ LQMDQD
Sbjct: 248 VIRLSKKASVHELYERVCTLKVVEQEKARIWDYFNK-RKQAILVASNQTLEESNLQMDQD 306
Query: 237 ILLEVQVD----NGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGS 292
ILLEVQ+D +G MDSTGN+LALVP+EP RSS++IAGGP LSNG++ + N Y GS
Sbjct: 307 ILLEVQLDGYWPSGFGMDSTGNELALVPMEPPRSSVSIAGGPTLSNGYSKVHTSNLYQGS 366
Query: 293 SFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDY 352
GSTF DM+DGYD + KG++GGLAGLQNLGNTCFMNSA+QCLVHTP + +YFL DY
Sbjct: 367 PLGSTFTDMEDGYDVLRSVAKGDRGGLAGLQNLGNTCFMNSAIQCLVHTPPIFEYFLQDY 426
Query: 353 SDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQ 412
++EIN +NPLGM+GELA AFG+LLRKLWSSGR VAPRAFKGKLARFAPQFSGYNQHDSQ
Sbjct: 427 TEEINKQNPLGMNGELAFAFGELLRKLWSSGRTPVAPRAFKGKLARFAPQFSGYNQHDSQ 486
Query: 413 ELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQY 472
ELLAFLLDGLHEDLNRVKQKPYIE KDS GRPDEEVA+ECW+NHKARNDSLIVDV QGQY
Sbjct: 487 ELLAFLLDGLHEDLNRVKQKPYIETKDSNGRPDEEVADECWRNHKARNDSLIVDVCQGQY 546
Query: 473 KSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCC 532
KSTLVCPVCSK+SITFDPFMYL+LPLPSTVTR MTVTVFY +GSGLPMP+TVT++KHG C
Sbjct: 547 KSTLVCPVCSKISITFDPFMYLSLPLPSTVTRIMTVTVFYGDGSGLPMPYTVTVLKHGYC 606
Query: 533 KDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGG 592
KDL AL+ ACCLK DE LLLAEVY H+I+R+ ENP+EL+++IKD+EHIVAYR +K+ G
Sbjct: 607 KDLSQALAAACCLKSDENLLLAEVYEHRIYRYIENPSELLTNIKDEEHIVAYRLPKKRAG 666
Query: 593 KIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLSPLRR-T 651
+LEI++R Q++ D LKG ERKL GAPLVTYL E+ +GADIDIAVS+LLSPLRR T
Sbjct: 667 LTRLEIIHRCQQQCTPDSLKGGERKLLGAPLVTYLGEDAQTGADIDIAVSRLLSPLRRKT 726
Query: 652 Y-SSAKAHGGKENGFLPEVIDELSN-------SHNESVETAELEDLCSRELSFQLSLTDE 703
Y SS+ H GKENG + E D +N S N+S + ELE++ ELSFQLS+TDE
Sbjct: 727 YPSSSNVHSGKENGSVSEATDNPTNSCNTQSGSGNQSTDGTELEEMSRWELSFQLSITDE 786
Query: 704 RISSCKPIQKDSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAI 763
R SCKPI+KDS+++PG+ I+V+LDWTD HELYD SY++DLP VHK GFT KKTR EAI
Sbjct: 787 RGLSCKPIEKDSLIRPGQFIRVMLDWTDKEHELYDASYLRDLPEVHKNGFTAKKTRPEAI 846
Query: 764 SLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKN 823
+LFSCL+AFL EEPLGP DMWYCP CKEHRQATKKLDLW LPD+LVFHLKRFSYSRYLKN
Sbjct: 847 TLFSCLEAFLKEEPLGPQDMWYCPNCKEHRQATKKLDLWRLPDILVFHLKRFSYSRYLKN 906
Query: 824 KLDTFVNFPILNLDLSKYMKSKDG--ESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRW 881
KLDT VNFPI +LDLS+Y+K KD +S+VY+L+AISNHYGGLGGGHY+AYAKLIDENRW
Sbjct: 907 KLDTLVNFPIHSLDLSQYVKCKDASSQSHVYELYAISNHYGGLGGGHYSAYAKLIDENRW 966
Query: 882 YHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSKTKAEMAETSQGH 925
YHFDDSHVSPV E +IKTSAAYVLFY+RVK+ K E S GH
Sbjct: 967 YHFDDSHVSPVGESEIKTSAAYVLFYQRVKAAPKIGTGEPSLGH 1010
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742456|emb|CBI34605.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255555787|ref|XP_002518929.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] gi|223541916|gb|EEF43462.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224117792|ref|XP_002317669.1| predicted protein [Populus trichocarpa] gi|222860734|gb|EEE98281.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224056675|ref|XP_002298967.1| predicted protein [Populus trichocarpa] gi|222846225|gb|EEE83772.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356576624|ref|XP_003556430.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 10-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356576622|ref|XP_003556429.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 10-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356535266|ref|XP_003536169.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 10-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449456269|ref|XP_004145872.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 9-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449507201|ref|XP_004162960.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 9-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 927 | ||||||
| TAIR|locus:2139202 | 923 | UBP9 "AT4G10570" [Arabidopsis | 0.970 | 0.975 | 0.614 | 4.4e-306 | |
| TAIR|locus:2139222 | 910 | UBP10 "AT4G10590" [Arabidopsis | 0.965 | 0.983 | 0.616 | 2.2e-304 | |
| TAIR|locus:2037985 | 892 | UBP11 "AT1G32850" [Arabidopsis | 0.937 | 0.974 | 0.606 | 9e-283 | |
| TAIR|locus:2058490 | 924 | UBP5 "ubiquitin-specific prote | 0.964 | 0.967 | 0.481 | 3.2e-223 | |
| TAIR|locus:505006627 | 871 | UBP8 "ubiquitin-specific prote | 0.775 | 0.825 | 0.479 | 5.2e-168 | |
| ZFIN|ZDB-GENE-041008-187 | 1009 | usp4 "ubiquitin specific prote | 0.646 | 0.593 | 0.386 | 2.1e-154 | |
| UNIPROTKB|J9PBI4 | 953 | USP15 "Ubiquitin carboxyl-term | 0.394 | 0.384 | 0.428 | 2.3e-154 | |
| UNIPROTKB|E1C719 | 953 | USP15 "Ubiquitin carboxyl-term | 0.393 | 0.383 | 0.434 | 8.6e-154 | |
| UNIPROTKB|F1NFR2 | 955 | USP15 "Ubiquitin carboxyl-term | 0.393 | 0.382 | 0.434 | 1.1e-153 | |
| UNIPROTKB|F1SKD5 | 982 | LOC100737425 "Ubiquitin carbox | 0.689 | 0.650 | 0.354 | 1.5e-153 |
| TAIR|locus:2139202 UBP9 "AT4G10570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2937 (1038.9 bits), Expect = 4.4e-306, P = 4.4e-306
Identities = 571/929 (61%), Positives = 709/929 (76%)
Query: 1 MTIRDSSVLMMENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERY 60
MTI +S M+ENG LP TP+EE++IV +L ++S+ +LK+GNLYF+IS RWY SW+ Y
Sbjct: 1 MTIPNSD-FMLENGVCDLPFTPEEEKRIVSELTSESEDNLKQGNLYFVISKRWYTSWQEY 59
Query: 61 VCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQ 120
V E S + S G SS+ A RPGPIDN DII++ S+ +D ++RR L EG+
Sbjct: 60 V---ENSANECS------TGESSE-APRPGPIDNHDIIES---DSDINDPQLRRLLVEGE 106
Query: 121 DYVLVPQQVWEKLFCWYKGGPALPRKMISEGIVNEK-RVEVFXLCLKLIDSRDNSQTVIR 179
DYVLVP+QVW++L WY GGP + RK+I +G VEV+ LCL L D RD S+TVIR
Sbjct: 107 DYVLVPKQVWKRLVEWYSGGPPIERKLICQGFYTRSYSVEVYPLCLMLTDGRDESRTVIR 166
Query: 180 LSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLD-VSDQTLDDAMLQMDQDIL 238
L K+AS R+LYEKVC + G+ QEKA IWDYF+K R LD +S ++L+++ L MDQDIL
Sbjct: 167 LGKQASIRELYEKVCAMTGVPQEKAHIWDYFDK-RKNGLLDPLSYKSLEESSLHMDQDIL 225
Query: 239 LEVQVDNGIS---MDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFG 295
+EV + S M STGN+LALVP+EPSRS +TIAGGP LSNGH+T F+ +P
Sbjct: 226 VEVDGLSSSSQSAMSSTGNELALVPLEPSRSIVTIAGGPTLSNGHSTTSNFSLFP----- 280
Query: 296 STFMDMDDGYDSYNTXXXXXXXXXXXXQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDE 355
DDG DS + NLGNTCFMNSALQCL HTP + +YFL DYSD+
Sbjct: 281 -RITSEDDGRDSLSILGKGEKGGLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDD 339
Query: 356 INTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELL 415
IN +NPLGM GELA+AFGDLL+KLWSSGR AVAPRAFK KLARFAPQFSGYNQHDSQELL
Sbjct: 340 INRDNPLGMCGELAIAFGDLLKKLWSSGRNAVAPRAFKTKLARFAPQFSGYNQHDSQELL 399
Query: 416 AFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKST 475
AFLLDGLHEDLN+VK+KPYIE+KDS RPD+EVA E W HKARNDS+IVDV QGQYKST
Sbjct: 400 AFLLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQGQYKST 459
Query: 476 LVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDL 535
LVCPVC K+SITFDPFMYL++PLPST+TR+MT+TVFY +GS LPMP+TV + K G +DL
Sbjct: 460 LVCPVCGKISITFDPFMYLSVPLPSTLTRSMTITVFYCDGSRLPMPYTVIVPKQGSIRDL 519
Query: 536 ILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDR--KQGGK 593
I AL TACCL DE LLLAEVY+H+IFR+FE P + +S+IKDDEHIVAYR ++ K K
Sbjct: 520 ITALGTACCLAEDESLLLAEVYDHKIFRYFEIPLDSLSAIKDDEHIVAYRLNQIPKGSRK 579
Query: 594 IKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSGADIDIAVSKLLSPLRRTYS 653
KLEI++ QE++ D ++GS+ KLFG P VTY+ E LSG DID +S LSPL + ++
Sbjct: 580 AKLEILHGGQERAVLDSVRGSDVKLFGTPFVTYVNTEPLSGTDIDAVISGFLSPLHKVHA 639
Query: 654 SAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQK 713
+K H G +NG L + + ++ S +T E+++ RELSF++ LTDER + KP+Q
Sbjct: 640 PSKIHNGSDNGHLADATVDQASGILSSPDT-EIDNASDRELSFRIFLTDERGLNIKPLQS 698
Query: 714 DSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFL 773
+S + PG +VL++W + HE YD SY+ DLP VHKT F+ KKTRQE+ISLFSCL+AFL
Sbjct: 699 ESSISPGTVTRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTRQESISLFSCLEAFL 758
Query: 774 TEEPLGPDDMWYCPQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPI 833
EEPLGPDDMW+CP CKEHRQA KKLDLW LPD+LVFHLKRF+YSRYLKNK+DTFVNFP+
Sbjct: 759 AEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPV 818
Query: 834 LNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVS 893
+LDLSKY+K+K+G+SY+Y+L+A+SNHYGGLGGGHYTAYAKLID+N+WYHFDDSHVS V+
Sbjct: 819 HDLDLSKYVKNKNGQSYLYELYAVSNHYGGLGGGHYTAYAKLIDDNKWYHFDDSHVSSVN 878
Query: 894 EGDIKTSAAYVLFYRRVKSKTKAEMAETS 922
E +I+ SAAYVLFYRRV+S+T+ + AE S
Sbjct: 879 ESEIRNSAAYVLFYRRVRSETETQTAEMS 907
|
|
| TAIR|locus:2139222 UBP10 "AT4G10590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2037985 UBP11 "AT1G32850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2058490 UBP5 "ubiquitin-specific protease 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:505006627 UBP8 "ubiquitin-specific protease 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-041008-187 usp4 "ubiquitin specific protease 4 (proto-oncogene)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|J9PBI4 USP15 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C719 USP15 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NFR2 USP15 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SKD5 LOC100737425 "Ubiquitin carboxyl-terminal hydrolase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P35123 | UBP4_MOUSE | 3, ., 4, ., 1, 9, ., 1, 2 | 0.3828 | 0.9234 | 0.8898 | yes | no |
| Q9Y4E8 | UBP15_HUMAN | 3, ., 4, ., 1, 9, ., 1, 2 | 0.3650 | 0.9331 | 0.8817 | yes | no |
| Q2HJE4 | UBP15_BOVIN | 3, ., 4, ., 1, 9, ., 1, 2 | 0.3687 | 0.8813 | 0.8581 | yes | no |
| Q9ZSB5 | UBP10_ARATH | 3, ., 4, ., 1, 9, ., 1, 2 | 0.6217 | 0.9719 | 0.9761 | yes | no |
| B2GUZ1 | UBP4_RAT | 3, ., 4, ., 1, 9, ., 1, 2 | 0.3844 | 0.9266 | 0.8938 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.19 | 0.976 |
| 3rd Layer | 3.4.19.12 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
 | estExt_fgenesh4_pm.C_LG_XI0421 | hypothetical protein (942 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 927 | |||
| COG5560 | 823 | COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po | 1e-151 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 1e-60 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 2e-50 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 1e-46 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 2e-39 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 3e-38 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 2e-34 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 6e-34 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 6e-31 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 1e-28 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 7e-26 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 1e-25 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 2e-24 | |
| pfam06337 | 86 | pfam06337, DUSP, DUSP domain | 5e-24 | |
| smart00695 | 88 | smart00695, DUSP, Domain in ubiquitin-specific pro | 7e-24 | |
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 2e-23 | |
| cd02663 | 300 | cd02663, Peptidase_C19G, A subfamily of Peptidase | 3e-19 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 1e-18 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 2e-18 | |
| cd02671 | 332 | cd02671, Peptidase_C19O, A subfamily of Peptidase | 4e-15 | |
| cd02657 | 305 | cd02657, Peptidase_C19A, A subfamily of Peptidase | 8e-15 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 1e-14 | |
| cd02657 | 305 | cd02657, Peptidase_C19A, A subfamily of Peptidase | 2e-13 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 3e-13 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 1e-12 | |
| cd02669 | 440 | cd02669, Peptidase_C19M, A subfamily of Peptidase | 1e-12 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 6e-12 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 2e-11 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 5e-10 | |
| cd02669 | 440 | cd02669, Peptidase_C19M, A subfamily of Peptidase | 7e-10 | |
| COG5077 | 1089 | COG5077, COG5077, Ubiquitin carboxyl-terminal hydr | 8e-10 | |
| cd02671 | 332 | cd02671, Peptidase_C19O, A subfamily of Peptidase | 3e-09 | |
| cd02663 | 300 | cd02663, Peptidase_C19G, A subfamily of Peptidase | 2e-08 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 4e-08 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 2e-07 | |
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 2e-07 | |
| cd02673 | 245 | cd02673, Peptidase_C19Q, A subfamily of Peptidase | 5e-07 | |
| pfam13423 | 296 | pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr | 9e-07 | |
| COG5207 | 749 | COG5207, UBP14, Isopeptidase T [Posttranslational | 2e-06 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 3e-06 | |
| pfam13423 | 296 | pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr | 5e-06 | |
| cd02672 | 268 | cd02672, Peptidase_C19P, A subfamily of Peptidase | 8e-05 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 1e-04 | |
| COG5207 | 749 | COG5207, UBP14, Isopeptidase T [Posttranslational | 3e-04 | |
| cd02665 | 228 | cd02665, Peptidase_C19I, A subfamily of Peptidase | 3e-04 |
| >gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 465 bits (1199), Expect = e-151
Identities = 273/903 (30%), Positives = 375/903 (41%), Gaps = 157/903 (17%)
Query: 41 KEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQN 100
K+ + + WY D S PGPI I+
Sbjct: 42 KQCEYAVIFAYAWYEGMFDRASCDGGS---------------------PGPIVQGPIV-- 78
Query: 101 GNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWY-KGGPALPRKMISEGIVNEKR-- 157
+ + ++++L EG DY ++ VW+ L WY G P I+ + +E
Sbjct: 79 -----DFEPESLKKSLREGIDYSIISGAVWQLLVRWYGLAGLITP--RITVLLPSESAPE 131
Query: 158 VEVFXLCLKL-----IDSRDNSQTV----IRLSKKASTRQLYEKVCKLRGIEQEKARIWD 208
VE + + KL I+ + S + R L E+V + R+WD
Sbjct: 132 VESYPVVFKLHWLFSINGSLINLGHDPVPHSASSHGTLRDLSERVMNAFVDPSDDFRLWD 191
Query: 209 YFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNGISMDSTGNDLALVPIEPSRSSL 268
+ D + +L + D + L+ + P
Sbjct: 192 VVPEIMGLR--LGLDSFFRRYRVLASDGRVLHPLTRLELFEDRSVLLLSKITRNPD---- 245
Query: 269 TIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNT 328
S N+ + G GL+NLGNT
Sbjct: 246 ----WLVDSIVDDHNRSINK---------------------------EAGTCGLRNLGNT 274
Query: 329 CFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAV 387
C+MNSALQCL+HT +L YFL D Y + IN ENPLGMHG +A A+ DL+++L+ A
Sbjct: 275 CYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAF 334
Query: 388 APRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEE 447
P FK + F +FSGY+Q DSQE +AFLLDGLHEDLNR+ +KPY D D
Sbjct: 335 TPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVV 394
Query: 448 V---ANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTR 504
V A ECW H RNDS+I D+FQG YKSTL CP C VSITFDPFM LTLPLP ++
Sbjct: 395 VKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVW 454
Query: 505 TMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNHQIFRF 564
T+ VF +G P + L + L + + + +Y +
Sbjct: 455 KHTIVVFPESGR--RQPLKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYGGNYNM 512
Query: 565 FENPAELISS-IKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAP- 622
E +++ I + + Y I K +LFG P
Sbjct: 513 LEPADKVLLQDIPQTDFVYLY-------ETNDNGIEVPVVHLRIEKGYKSK--RLFGDPF 563
Query: 623 --------------LVTYLEE--EHLSGADIDIAVSKLLSPLRRTYSSAKAHGGKENGFL 666
LV EE + D+ + L R SS
Sbjct: 564 LQLNVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSP--------SSW 615
Query: 667 PEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSILKPGKHIKVL 726
++ E+ E VE Q++ D + SC K L
Sbjct: 616 LKLETEIDTKREEQVEEEG-----------QMNFNDAVVISC--------EWEEKRYLSL 656
Query: 727 LDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYC 786
YDP + + + G + I+L CL+ F E LG D WYC
Sbjct: 657 FS--------YDPLWT-----IREIGAAERT-----ITLQDCLNEFSKPEQLGLSDSWYC 698
Query: 787 PQCKEHRQATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKD 846
P CKE RQA+K+++LW LP +L+ HLKRFS R ++K+D V +PI +LDLS D
Sbjct: 699 PGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVD 758
Query: 847 GESYVYDLFAISNHYGGLGGGHYTAYAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLF 906
+YDL+A+ NHYGGL GGHYTAYA+ N WY FDDS ++ V D TS+AYVLF
Sbjct: 759 DPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLF 818
Query: 907 YRR 909
YRR
Sbjct: 819 YRR 821
|
Length = 823 |
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|218995 pfam06337, DUSP, DUSP domain | Back alignment and domain information |
|---|
| >gnl|CDD|197831 smart00695, DUSP, Domain in ubiquitin-specific proteases | Back alignment and domain information |
|---|
| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 927 | |||
| COG5560 | 823 | UBP12 Ubiquitin C-terminal hydrolase [Posttranslat | 100.0 | |
| KOG1870 | 842 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| KOG1865 | 545 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| COG5533 | 415 | UBP5 Ubiquitin C-terminal hydrolase [Posttranslati | 100.0 | |
| cd02663 | 300 | Peptidase_C19G A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02668 | 324 | Peptidase_C19L A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02671 | 332 | Peptidase_C19O A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02660 | 328 | Peptidase_C19D A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02667 | 279 | Peptidase_C19K A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02669 | 440 | Peptidase_C19M A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02664 | 327 | Peptidase_C19H A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1868 | 653 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| cd02658 | 311 | Peptidase_C19B A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02657 | 305 | Peptidase_C19A A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02661 | 304 | Peptidase_C19E A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02659 | 334 | peptidase_C19C A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02662 | 240 | Peptidase_C19F A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1873 | 877 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| cd02674 | 230 | Peptidase_C19R A subfamily of peptidase C19. Pepti | 100.0 | |
| cd02673 | 245 | Peptidase_C19Q A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1867 | 492 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| cd02665 | 228 | Peptidase_C19I A subfamily of Peptidase C19. Pepti | 100.0 | |
| PF00443 | 269 | UCH: Ubiquitin carboxyl-terminal hydrolase; InterP | 100.0 | |
| KOG1866 | 944 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| KOG0944 | 763 | consensus Ubiquitin-specific protease UBP14 [Postt | 100.0 | |
| cd02666 | 343 | Peptidase_C19J A subfamily of Peptidase C19. Pepti | 100.0 | |
| COG5077 | 1089 | Ubiquitin carboxyl-terminal hydrolase [Posttransla | 100.0 | |
| cd02672 | 268 | Peptidase_C19P A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02257 | 255 | Peptidase_C19 Peptidase C19 contains ubiquitinyl h | 100.0 | |
| KOG4598 | 1203 | consensus Putative ubiquitin-specific protease [Po | 100.0 | |
| COG5207 | 749 | UBP14 Isopeptidase T [Posttranslational modificati | 100.0 | |
| KOG1863 | 1093 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| cd02670 | 241 | Peptidase_C19N A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| PF13423 | 295 | UCH_1: Ubiquitin carboxyl-terminal hydrolase | 99.97 | |
| KOG2026 | 442 | consensus Spindle pole body protein - Sad1p [Cytos | 99.96 | |
| KOG1871 | 420 | consensus Ubiquitin-specific protease [Posttransla | 99.96 | |
| KOG1872 | 473 | consensus Ubiquitin-specific protease [Posttransla | 99.93 | |
| PF06337 | 99 | DUSP: DUSP domain; InterPro: IPR006615 Deubiquitin | 99.84 | |
| smart00695 | 86 | DUSP Domain in ubiquitin-specific proteases. | 99.8 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 99.56 | |
| PF14836 | 88 | Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A | 98.63 | |
| PF14533 | 213 | USP7_C2: Ubiquitin-specific protease C-terminal; P | 97.36 | |
| PF15499 | 275 | Peptidase_C98: Ubiquitin-specific peptidase-like, | 97.18 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 96.83 | |
| PF14560 | 87 | Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K | 92.67 | |
| cd01796 | 71 | DDI1_N DNA damage inducible protein 1 ubiquitin-li | 92.5 | |
| PTZ00044 | 76 | ubiquitin; Provisional | 91.3 | |
| cd01789 | 84 | Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol | 90.33 | |
| cd01807 | 74 | GDX_N ubiquitin-like domain of GDX. GDX contains a | 90.16 | |
| cd01763 | 87 | Sumo Small ubiquitin-related modifier (SUMO). Smal | 89.79 | |
| cd01806 | 76 | Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn | 89.79 | |
| cd01812 | 71 | BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter | 88.44 | |
| cd01803 | 76 | Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40 | 88.33 | |
| cd01799 | 75 | Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO | 87.82 | |
| cd01798 | 70 | parkin_N amino-terminal ubiquitin-like of parkin p | 87.45 | |
| cd01808 | 71 | hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC | 86.76 | |
| cd01810 | 74 | ISG15_repeat2 ISG15 ubiquitin-like protein, second | 86.69 | |
| cd01794 | 70 | DC_UbP_C dendritic cell derived ubiquitin-like pro | 86.09 | |
| cd01802 | 103 | AN1_N ubiquitin-like domain of AN1. AN1 (also know | 85.41 | |
| cd01793 | 74 | Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui | 84.61 | |
| PF00240 | 69 | ubiquitin: Ubiquitin family; InterPro: IPR000626 U | 84.18 | |
| cd01805 | 77 | RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo | 83.07 | |
| PF05408 | 193 | Peptidase_C28: Foot-and-mouth virus L-proteinase; | 82.33 | |
| cd01809 | 72 | Scythe_N Ubiquitin-like domain of Scythe protein. | 82.23 | |
| PF11543 | 80 | UN_NPL4: Nuclear pore localisation protein NPL4; I | 82.14 | |
| cd01804 | 78 | midnolin_N Ubiquitin-like domain of midnolin. midn | 81.65 | |
| cd01797 | 78 | NIRF_N amino-terminal ubiquitin-like domain of Np9 | 81.52 | |
| cd01791 | 73 | Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know | 81.52 | |
| PF11976 | 72 | Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter | 81.4 | |
| cd01792 | 80 | ISG15_repeat1 ISG15 ubiquitin-like protein, first | 80.02 |
| >COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-116 Score=959.62 Aligned_cols=775 Identities=33% Similarity=0.558 Sum_probs=575.8
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCCEEEEEchhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcChhhcc
Q 002408 20 CTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQ 99 (927)
Q Consensus 20 ~~~~~e~~~i~~l~~~~~~~~~~g~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~pgpIdNs~L~~ 99 (927)
+.-.+|++.|.+ +. ...-+.++..|+++..|++...++...+ ++.||||+-..|++
T Consensus 24 Lp~~~q~~li~e--~~-~e~~k~~~~a~i~~y~wyeg~fd~~~~d---------------------g~~pgPi~q~~i~d 79 (823)
T COG5560 24 LPLMMQEELIDE--KP-AESSKQCEYAVIFAYAWYEGMFDRASCD---------------------GGSPGPIVQGPIVD 79 (823)
T ss_pred cchHHHHHHHhc--Cc-hhhhccCceEEEEehHHhhhhccccccc---------------------CCCCCCCCcccccc
Confidence 345667777766 21 1223458899999999999988876443 36899999999997
Q ss_pred CCCCCCCCCcchhccccCCCCcEEEeCHHHHHHHHHHhC-CCCCcceEEeecccccceeeeeccceEEEEeccCC-----
Q 002408 100 NGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWYK-GGPALPRKMISEGIVNEKRVEVFXLCLKLIDSRDN----- 173 (927)
Q Consensus 100 ~~~~~~~~~~~~Lk~~l~e~~Df~~Vp~~~W~~l~~wYG-~~~~i~R~vi~~~~~~~~~vElyP~~l~i~~~~~~----- 173 (927)
- ....|+..+.++.||-+|+..+|++|.+||| .|+.++|.++.-+......+|+||+.|++..+...
T Consensus 80 ~-------e~e~lk~sl~e~idysiis~~vw~llvrwyGl~gl~~pr~tvll~ses~p~ve~yp~~f~lh~Lf~ing~~~ 152 (823)
T COG5560 80 F-------EPESLKKSLREGIDYSIISGAVWQLLVRWYGLAGLITPRITVLLPSESAPEVESYPVVFKLHWLFSINGSLI 152 (823)
T ss_pred c-------ChhhcchhhhcCCCeeeechHHHHHHHHHhcccccceeeEEeccccccCCccccccceEEEEEEEeccchhh
Confidence 2 2457899999999999999999999999999 58889999977654333379999999998765431
Q ss_pred ----CceEEEeCccccHHHHHHHHHHHhCCCCcceEEEEecCCcccccCCCCccCChhhhh--ccCCc----eEEEEEEe
Q 002408 174 ----SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAM--LQMDQ----DILLEVQV 243 (927)
Q Consensus 174 ----~~~~~~iS~~~t~~~l~~~~~~~~~l~~~~~Rlw~~~~~~~~~~ll~~~~~tl~d~~--l~~~q----~ilve~~~ 243 (927)
....+.+|+..++.++.+++..+|-++.+++|||++...+.+..+... .+..+.. ...++ .+++|.-.
T Consensus 153 n~gh~p~~~s~ss~~tlrdl~e~vmnaf~~psD~FRLw~v~~~~~~~r~~~~--s~f~~~~~~a~~~~~l~~~t~~el~~ 230 (823)
T COG5560 153 NLGHDPVPHSASSHGTLRDLSERVMNAFVDPSDDFRLWDVVPEIMGLRLGLD--SFFRRYRVLASDGRVLHPLTRLELFE 230 (823)
T ss_pred hcCCCcceeeccccchHHHHHHHHHHHhcCcccceeEEEecCCcccccccCH--HHHhhcchhccchhhhcccHHHHhcc
Confidence 345678999999999999999999999999999999765543111110 0000000 00000 01111111
Q ss_pred cCccccCCCCCCCccccccCCCCcccccCCCCccCCCccCcccCCCCCCCCCCCCCCCCCCcCcccccccCCCCCccccc
Q 002408 244 DNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQ 323 (927)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~g~~GL~ 323 (927)
+. +...+ ...+.|+.- ..-+ .. .+..+ ++- ..-|.+||.
T Consensus 231 d~--------------------s~lll--~kit~np~w-----------lvds-i~-~~~n~---sin---ke~GtcGL~ 269 (823)
T COG5560 231 DR--------------------SVLLL--SKITRNPDW-----------LVDS-IV-DDHNR---SIN---KEAGTCGLR 269 (823)
T ss_pred ch--------------------hhhHH--hhhccCCcc-----------ceee-ec-chhhh---hHH---hhcccccee
Confidence 10 00000 000111100 0000 00 01111 111 113999999
Q ss_pred cCCCcchHHHHHHHHhCChHHHHHHHhc-CCcccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHHHHHhhCCC
Q 002408 324 NLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQ 402 (927)
Q Consensus 324 NlGNTCYmNSvLQ~L~~~p~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~~l~~~~~~ 402 (927)
|+||||||||+||||.|++.||+||++. |.+++|..||+|+.|.++.+|+.|+++++.+...+++|..|+..||.++..
T Consensus 270 NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~fK~tIG~fn~~ 349 (823)
T COG5560 270 NLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSGFKKTIGSFNEE 349 (823)
T ss_pred cCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHHHHHHHhhhHHH
Confidence 9999999999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCCh---HHHHHHHHHhhcccCCCccccceeEEEEEEEEcC
Q 002408 403 FSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPD---EEVANECWKNHKARNDSLIVDVFQGQYKSTLVCP 479 (927)
Q Consensus 403 f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~---~~~a~~~w~~~~~~~~sii~~lF~G~~~s~i~C~ 479 (927)
|.||.|||+|||+.+|||+|||+|||+.+|||.+.++-....+ ...|+++|..|+.||+|||.++|+|.++|+++|+
T Consensus 350 fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLFqgmyKSTL~Cp 429 (823)
T COG5560 350 FSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCP 429 (823)
T ss_pred hcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhceeecc
Confidence 9999999999999999999999999999999998887543333 4579999999999999999999999999999999
Q ss_pred CCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEEEEeCC
Q 002408 480 VCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLAEVYNH 559 (927)
Q Consensus 480 ~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~e~~~~ 559 (927)
.|+.+|++||||++|+||||....|..+|++||.+|...| ..+.+.+.+++.++++.+..+.|+..-..+.+.++|.+
T Consensus 430 ~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~p--l~iel~~sSt~~~lk~lv~~~~gk~gc~ei~v~~iy~g 507 (823)
T COG5560 430 GCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQP--LKIELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYG 507 (823)
T ss_pred CcCceeeeecchhhccccCchhhcccccEEEECCCCCCCc--eEEEEeccchHHHHHHHHHHHhccCCccceeEEEEEec
Confidence 9999999999999999999999999999999999999888 56778888899999888888777666667888999999
Q ss_pred eeEEeecCCccc-ccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEE-EecCCCCCHHHH
Q 002408 560 QIFRFFENPAEL-ISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVT-YLEEEHLSGADI 637 (927)
Q Consensus 560 ~~~~~~~d~~~~-~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~-~~~~~~~~~~~i 637 (927)
..++.+...... +..|.+.|.+|.|+ ..++...++++|-+.+.. .....+||.|++. .+.....-...+
T Consensus 508 ~~y~~l~~~dk~ll~~I~~~d~vylYe---~~~ngi~vpvvh~~~~~g------Yks~rlFg~pflqlnv~~~~~i~~kL 578 (823)
T COG5560 508 GNYNMLEPADKVLLQDIPQTDFVYLYE---TNDNGIEVPVVHLRIEKG------YKSKRLFGDPFLQLNVLIKASIYDKL 578 (823)
T ss_pred cchhhcchhhHHHHhhcCccceEEEee---cCCCCeEEEEEecccccc------ccchhhhCCcceEEEeecchhhHHHH
Confidence 999998876664 56799999999999 555668899999866543 3556799999742 222222212222
Q ss_pred HHHHHHhccccc-cccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCCccCCC
Q 002408 638 DIAVSKLLSPLR-RTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKDSI 716 (927)
Q Consensus 638 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (927)
...+.+++.... .....+..+. +--.. ..++......+++.. -..+.-+.....+.
T Consensus 579 vkE~~ell~~v~~k~tdvd~~~~---q~~l~-------r~es~p~~wl~l~te-------------id~kree~veeE~~ 635 (823)
T COG5560 579 VKEFEELLVLVEMKKTDVDLVSE---QVRLL-------REESSPSSWLKLETE-------------IDTKREEQVEEEGQ 635 (823)
T ss_pred HHHHHHHHHHHhhcchhhhhhhh---hccch-------hcccCcchhhhhhhh-------------ccchhhhhhhhhhc
Confidence 111111111000 0000000000 00000 000000000000000 00000000000011
Q ss_pred CCCCCceEEEEeecCccccc-CC-cccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcccce
Q 002408 717 LKPGKHIKVLLDWTDDVHEL-YD-PSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQ 794 (927)
Q Consensus 717 ~~~~~~~~i~~~w~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~ 794 (927)
...+..+.|.+.|.+..... |+ ...+- .-+.+ .....+||+|||++|.++|+|+..|.||||.||++++
T Consensus 636 ~n~nd~vvi~cew~ek~y~~lFsy~~lw~----~~ei~-----~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrq 706 (823)
T COG5560 636 MNFNDAVVISCEWEEKRYLSLFSYDPLWT----IREIG-----AAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQ 706 (823)
T ss_pred cCCCcceEEeeeccccchhhhhcCCccch----hHHhh-----hccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhh
Confidence 12244567889998876554 42 11000 00011 1257899999999999999999999999999999999
Q ss_pred EEEEEEeeeCCCeEEEEEeceeeecccccccceeeeccCCCcccccccccCCCCceEEEEEEEEEeeccCCCCeEEEEEE
Q 002408 795 ATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYAK 874 (927)
Q Consensus 795 a~K~~~I~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVi~H~G~l~~GHYtAy~k 874 (927)
|+|+|+||++|+|||||||||++.+.+++||++.|.|||.+|||+.++....+...+|+||||.||+|+++|||||||+|
T Consensus 707 asKqmelwrlP~iLiihLkRFss~rsfrdKiddlVeyPiddldLs~~~~~~~~p~liydlyavDNHygglsgGHYtAyar 786 (823)
T COG5560 707 ASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYAR 786 (823)
T ss_pred hhhhhhhhcCChheeeehhhhhhcccchhhhhhhhccccccccccceEEeecCcceEEEeeeccccccccCCcceeeeee
Confidence 99999999999999999999999999999999999999999999999987766679999999999999999999999999
Q ss_pred eCCCCCEEEECCceeeecCcCcccCCceEEEEEEEec
Q 002408 875 LIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVK 911 (927)
Q Consensus 875 ~~~~~~Wy~fnDs~V~~v~~~~V~s~~AYlLFY~R~~ 911 (927)
|+.+++||+|||++|++|.+++.++++||||||+|+.
T Consensus 787 n~~n~~wy~fdDsritevdped~vtssaYvLFyrrk~ 823 (823)
T COG5560 787 NFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRKS 823 (823)
T ss_pred cccCCceEEecCccccccCccccccceeEEEEEEecC
Confidence 9999999999999999999999999999999999974
|
|
| >KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02663 Peptidase_C19G A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02668 Peptidase_C19L A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02671 Peptidase_C19O A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02660 Peptidase_C19D A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02667 Peptidase_C19K A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02669 Peptidase_C19M A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02664 Peptidase_C19H A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02658 Peptidase_C19B A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02657 Peptidase_C19A A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02661 Peptidase_C19E A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02659 peptidase_C19C A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02662 Peptidase_C19F A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02674 Peptidase_C19R A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >cd02673 Peptidase_C19Q A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02665 Peptidase_C19I A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02666 Peptidase_C19J A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02672 Peptidase_C19P A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02670 Peptidase_C19N A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins | Back alignment and domain information |
|---|
| >smart00695 DUSP Domain in ubiquitin-specific proteases | Back alignment and domain information |
|---|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A | Back alignment and domain information |
|---|
| >PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A | Back alignment and domain information |
|---|
| >PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A | Back alignment and domain information |
|---|
| >cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain | Back alignment and domain information |
|---|
| >PTZ00044 ubiquitin; Provisional | Back alignment and domain information |
|---|
| >cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B | Back alignment and domain information |
|---|
| >cd01807 GDX_N ubiquitin-like domain of GDX | Back alignment and domain information |
|---|
| >cd01763 Sumo Small ubiquitin-related modifier (SUMO) | Back alignment and domain information |
|---|
| >cd01806 Nedd8 Nebb8-like ubiquitin protein | Back alignment and domain information |
|---|
| >cd01812 BAG1_N Ubiquitin-like domain of BAG1 | Back alignment and domain information |
|---|
| >cd01803 Ubiquitin Ubiquitin | Back alignment and domain information |
|---|
| >cd01799 Hoil1_N Ubiquitin-like domain of HOIL1 | Back alignment and domain information |
|---|
| >cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein | Back alignment and domain information |
|---|
| >cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2 | Back alignment and domain information |
|---|
| >cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 | Back alignment and domain information |
|---|
| >cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein | Back alignment and domain information |
|---|
| >cd01802 AN1_N ubiquitin-like domain of AN1 | Back alignment and domain information |
|---|
| >cd01793 Fubi Fubi ubiquitin-like protein | Back alignment and domain information |
|---|
| >PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade | Back alignment and domain information |
|---|
| >cd01805 RAD23_N Ubiquitin-like domain of RAD23 | Back alignment and domain information |
|---|
| >PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >cd01809 Scythe_N Ubiquitin-like domain of Scythe protein | Back alignment and domain information |
|---|
| >PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway | Back alignment and domain information |
|---|
| >cd01804 midnolin_N Ubiquitin-like domain of midnolin | Back alignment and domain information |
|---|
| >cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF | Back alignment and domain information |
|---|
| >cd01791 Ubl5 UBL5 ubiquitin-like modifier | Back alignment and domain information |
|---|
| >PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins | Back alignment and domain information |
|---|
| >cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 927 | ||||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 5e-70 | ||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 3e-48 | ||
| 3n3k_A | 396 | The Catalytic Domain Of Usp8 In Complex With A Usp8 | 5e-45 | ||
| 3n3k_A | 396 | The Catalytic Domain Of Usp8 In Complex With A Usp8 | 1e-32 | ||
| 2gfo_A | 396 | Structure Of The Catalytic Domain Of Human Ubiquiti | 9e-43 | ||
| 2gfo_A | 396 | Structure Of The Catalytic Domain Of Human Ubiquiti | 1e-32 | ||
| 2hd5_A | 359 | Usp2 In Complex With Ubiquitin Length = 359 | 3e-35 | ||
| 2hd5_A | 359 | Usp2 In Complex With Ubiquitin Length = 359 | 2e-27 | ||
| 3v6c_A | 367 | Crystal Structure Of Usp2 In Complex With Mutated U | 3e-35 | ||
| 3v6c_A | 367 | Crystal Structure Of Usp2 In Complex With Mutated U | 3e-27 | ||
| 2ibi_A | 374 | Covalent Ubiquitin-Usp2 Complex Length = 374 | 4e-35 | ||
| 2ibi_A | 374 | Covalent Ubiquitin-Usp2 Complex Length = 374 | 5e-27 | ||
| 3nhe_A | 348 | High Resolution Structure (1.26a) Of Usp2a In Compl | 5e-34 | ||
| 3nhe_A | 348 | High Resolution Structure (1.26a) Of Usp2a In Compl | 3e-27 | ||
| 3mtn_A | 373 | Usp21 In Complex With A Ubiquitin-based, Usp21-spec | 5e-27 | ||
| 3mtn_A | 373 | Usp21 In Complex With A Ubiquitin-based, Usp21-spec | 6e-25 | ||
| 3i3t_A | 355 | Crystal Structure Of Covalent Ubiquitin-usp21 Compl | 5e-27 | ||
| 3i3t_A | 355 | Crystal Structure Of Covalent Ubiquitin-usp21 Compl | 7e-25 | ||
| 2y5b_A | 370 | Structure Of Usp21 In Complex With Linear Diubiquit | 5e-27 | ||
| 2y5b_A | 370 | Structure Of Usp21 In Complex With Linear Diubiquit | 8e-25 | ||
| 3pv1_A | 225 | Crystal Structure Of The Usp15 Dusp-Ubl Domains Len | 7e-20 | ||
| 3t9l_A | 230 | Structure Of N-Terminal Dusp-Ubl Domains Of Human U | 9e-20 | ||
| 3m99_A | 471 | Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod | 1e-19 | ||
| 4fip_A | 476 | Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- | 1e-19 | ||
| 3mhh_A | 476 | Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE | 1e-19 | ||
| 3ppa_A | 237 | Structure Of The Dusp-Ubl Domains Of Usp15 Length = | 1e-19 | ||
| 4a3o_A | 220 | Crystal Structure Of The Usp15 Dusp-Ubl Monomer Len | 1e-19 | ||
| 4a3p_A | 217 | Structure Of Usp15 Dusp-Ubl Deletion Mutant Length | 6e-19 | ||
| 3jyu_A | 231 | Crystal Structure Of The N-Terminal Domains Of The | 4e-16 | ||
| 3lmn_A | 135 | Oligomeric Structure Of The Dusp Domain Of Human Us | 2e-12 | ||
| 1w6v_A | 141 | Solution Structure Of The Dusp Domain Of Husp15 Len | 5e-11 | ||
| 3ihp_A | 854 | Covalent Ubiquitin-Usp5 Complex Length = 854 | 1e-05 | ||
| 1nb8_A | 353 | Structure Of The Catalytic Domain Of Usp7 (Hausp) L | 5e-04 | ||
| 1nbf_A | 353 | Crystal Structure Of A Ubp-Family Deubiquitinating | 8e-04 |
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
|
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
| >pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 | Back alignment and structure |
| >pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 | Back alignment and structure |
| >pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 | Back alignment and structure |
| >pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 | Back alignment and structure |
| >pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 | Back alignment and structure |
| >pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 | Back alignment and structure |
| >pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 | Back alignment and structure |
| >pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 | Back alignment and structure |
| >pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 | Back alignment and structure |
| >pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 | Back alignment and structure |
| >pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 | Back alignment and structure |
| >pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 | Back alignment and structure |
| >pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 | Back alignment and structure |
| >pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 | Back alignment and structure |
| >pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 | Back alignment and structure |
| >pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 | Back alignment and structure |
| >pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 | Back alignment and structure |
| >pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 | Back alignment and structure |
| >pdb|3PV1|A Chain A, Crystal Structure Of The Usp15 Dusp-Ubl Domains Length = 225 | Back alignment and structure |
| >pdb|3T9L|A Chain A, Structure Of N-Terminal Dusp-Ubl Domains Of Human Usp15 Length = 230 | Back alignment and structure |
| >pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 | Back alignment and structure |
| >pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 | Back alignment and structure |
| >pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 | Back alignment and structure |
| >pdb|3PPA|A Chain A, Structure Of The Dusp-Ubl Domains Of Usp15 Length = 237 | Back alignment and structure |
| >pdb|4A3O|A Chain A, Crystal Structure Of The Usp15 Dusp-Ubl Monomer Length = 220 | Back alignment and structure |
| >pdb|4A3P|A Chain A, Structure Of Usp15 Dusp-Ubl Deletion Mutant Length = 217 | Back alignment and structure |
| >pdb|3JYU|A Chain A, Crystal Structure Of The N-Terminal Domains Of The Ubiquitin Specific Peptidase 4 (Usp4) Length = 231 | Back alignment and structure |
| >pdb|3LMN|A Chain A, Oligomeric Structure Of The Dusp Domain Of Human Usp15 Length = 135 | Back alignment and structure |
| >pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex Length = 854 | Back alignment and structure |
| >pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 | Back alignment and structure |
| >pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
Score = 306 bits (784), Expect = 9e-96
Identities = 99/247 (40%), Positives = 137/247 (55%), Gaps = 4/247 (1%)
Query: 264 SRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQ 323
S L G P ++ + YP + + N G L GL+
Sbjct: 10 HSSGLVPRGSPTVTPTVNRENKPTCYPKAEISRLS---ASQIRNLNPVFGGSGPALTGLR 66
Query: 324 NLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLLRKLWSS 382
NLGNTC+MNS LQCL + P LA YF Y D+IN N LG GE+A FG +++ LW+
Sbjct: 67 NLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTG 126
Query: 383 GRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGG 442
++P+ FK + + QF+GY+Q DSQELL FL+DGLHEDLN+ + + +++
Sbjct: 127 QYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDH 186
Query: 443 RPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTV 502
D + A W+ HK N+S+IV +FQGQ+KST+ C C K S TF+ FMYL+LPL ST
Sbjct: 187 LDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTS 246
Query: 503 TRTMTVT 509
T+
Sbjct: 247 KCTLQDC 253
|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus} Length = 231 | Back alignment and structure |
|---|
| >4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A Length = 217 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens} Length = 530 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 927 | |||
| 2y6e_A | 367 | Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; | 100.0 | |
| 2gfo_A | 396 | Ubiquitin carboxyl-terminal hydrolase 8; protease, | 100.0 | |
| 3nhe_A | 348 | Ubiquitin carboxyl-terminal hydrolase 2; cysteine | 100.0 | |
| 3i3t_A | 355 | Ubiquitin carboxyl-terminal hydrolase 21; hydrolas | 100.0 | |
| 1nb8_A | 353 | Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub | 100.0 | |
| 2ayn_A | 404 | Ubiquitin carboxyl-terminal hydrolase 14; deubiqui | 100.0 | |
| 3mhs_A | 476 | Ubiquitin carboxyl-terminal hydrolase 8; multi-pro | 100.0 | |
| 1vjv_A | 415 | Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, | 100.0 | |
| 2f1z_A | 522 | Ubiquitin carboxyl-terminal hydrolase 7; hausp, US | 100.0 | |
| 3ihp_A | 854 | Ubiquitin carboxyl-terminal hydrolase 5; hydrolase | 100.0 | |
| 3jyu_A | 231 | Ubiquitin carboxyl-terminal hydrolase; domain in u | 100.0 | |
| 4a3p_A | 217 | Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H | 100.0 | |
| 2vhf_A | 374 | Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki | 99.93 | |
| 1w6v_A | 141 | Ubiquitin carboxyl-terminal hydrolase 15; UCH, USP | 99.92 | |
| 2ylm_A | 530 | Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70 | 98.82 | |
| 4b6w_A | 86 | Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik | 92.33 | |
| 2kj6_A | 97 | Tubulin folding cofactor B; methods development, N | 92.16 | |
| 1wjn_A | 97 | Tubulin-folding protein TBCE; ubiquitin-like domai | 91.67 | |
| 2kjr_A | 95 | CG11242; UBL, ubiquitin, ubiquitin-like, structura | 91.32 | |
| 2kan_A | 94 | Uncharacterized protein AR3433A; ubiquitin fold, a | 91.16 | |
| 4dbg_A | 105 | Ranbp-type and C3HC4-type zinc finger-containing; | 91.12 | |
| 3plu_A | 93 | Ubiquitin-like modifier HUB1; ubiquitin-like, HUB- | 90.88 | |
| 3a9j_A | 76 | Ubiquitin; protein complex, cytoplasm, isopeptide | 88.77 | |
| 3phx_B | 79 | Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu | 88.77 | |
| 3mtn_B | 85 | UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit | 88.72 | |
| 3k9o_B | 96 | Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b | 88.52 | |
| 1sif_A | 88 | Ubiquitin; hydrophobic mutants, folding, stability | 87.91 | |
| 3n3k_B | 85 | Ubiquitin; hydrolase, protease, thiol protease, DU | 87.89 | |
| 2bwf_A | 77 | Ubiquitin-like protein DSK2; signaling protein, UB | 87.78 | |
| 3v6c_B | 91 | Ubiquitin; structural genomics, structural genomic | 87.61 | |
| 1wxv_A | 92 | BAG-family molecular chaperone regulator-1; struct | 87.54 | |
| 2uyz_B | 79 | Small ubiquitin-related modifier 1; sumoylation, c | 87.28 | |
| 1wh3_A | 87 | 59 kDa 2'-5'-oligoadenylate synthetase like protei | 87.23 | |
| 4dwf_A | 90 | HLA-B-associated transcript 3; ubiquitin-like doma | 87.17 | |
| 4hcn_B | 98 | Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas | 86.68 | |
| 3dbh_I | 88 | NEDD8; cell cycle, activating enzyme, apoptosis, m | 86.64 | |
| 2daf_A | 118 | FLJ35834 protein; hypothetical protein FLJ35834, u | 86.57 | |
| 1wju_A | 100 | NEDD8 ultimate buster-1; ubiquitin-like domain, st | 86.4 | |
| 4fbj_B | 88 | NEDD8; effector-HOST target complex, glutamine dea | 86.38 | |
| 2hj8_A | 88 | Interferon-induced 17 kDa protein; HR2873B, human | 86.35 | |
| 1wyw_B | 97 | Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho | 86.34 | |
| 3vdz_A | 111 | Ubiquitin-40S ribosomal protein S27A; gadolinium, | 86.12 | |
| 2klc_A | 101 | Ubiquilin-1; ubiquitin-like, structural genomics, | 86.01 | |
| 1v6e_A | 95 | Cytoskeleton-associated protein 1; tubulin-specifi | 85.9 | |
| 1t0y_A | 122 | Tubulin folding cofactor B; ubiquitin-like, cytosk | 85.9 | |
| 1yx5_B | 98 | Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s | 85.87 | |
| 2kd0_A | 85 | LRR repeats and ubiquitin-like domain-containing p | 85.71 | |
| 3a4r_A | 79 | Nfatc2-interacting protein; ubiquitin fold, coiled | 85.5 | |
| 1yqb_A | 100 | Ubiquilin 3; structural genomics consortium, ubiqu | 85.49 | |
| 1wx7_A | 106 | Ubiquilin 3; ubiquitin-like domain, structural gen | 85.33 | |
| 4eew_A | 88 | Large proline-rich protein BAG6; ubiquitin-like fo | 85.09 | |
| 1v5o_A | 102 | 1700011N24RIK protein; hypothetical protein, ubiqu | 84.94 | |
| 2fnj_B | 118 | Transcription elongation factor B polypeptide 2; b | 84.77 | |
| 2l7r_A | 93 | Ubiquitin-like protein FUBI; structural genomics, | 84.76 | |
| 1ndd_A | 76 | NEDD8, protein (ubiquitin-like protein NEDD8); pro | 84.4 | |
| 4ajy_B | 118 | Transcription elongation factor B polypeptide 2; E | 83.56 | |
| 2wyq_A | 85 | HHR23A, UV excision repair protein RAD23 homolog A | 83.2 | |
| 1j8c_A | 125 | Ubiquitin-like protein hplic-2; ubiquitin-like dom | 83.01 | |
| 2ojr_A | 111 | Ubiquitin; lanthide-binding TAG, terbium, TB, SAD | 82.97 | |
| 3m63_B | 101 | Ubiquitin domain-containing protein DSK2; armadill | 82.42 | |
| 1uh6_A | 100 | Ubiquitin-like 5; beta-grAsp fold, structural geno | 81.72 | |
| 3m62_B | 106 | UV excision repair protein RAD23; armadillo-like r | 81.68 | |
| 2dzi_A | 81 | Ubiquitin-like protein 4A; GDX, structural genomic | 81.34 | |
| 1wy8_A | 89 | NP95-like ring finger protein, isoform A; ubiquiti | 81.25 | |
| 2kk8_A | 84 | Uncharacterized protein AT4G05270; solution arabid | 80.68 | |
| 2io1_B | 94 | Small ubiquitin-related modifier 3 precursor; SUMO | 80.38 | |
| 1v86_A | 95 | DNA segment, CHR 7, wayne state university 128, ex | 80.29 |
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-76 Score=671.47 Aligned_cols=357 Identities=61% Similarity=1.068 Sum_probs=320.8
Q ss_pred CCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhc-CCcccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHH
Q 002408 315 EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFK 393 (927)
Q Consensus 315 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~ 393 (927)
..+|++||.|+||||||||+||||+|+|+|+++|+.. +..+++..++.+..+.++.+|+.|+..||.+...+++|..|+
T Consensus 4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~ 83 (367)
T 2y6e_A 4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFK 83 (367)
T ss_dssp CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHH
T ss_pred CCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHH
Confidence 4689999999999999999999999999999999987 666777788888889999999999999999888999999999
Q ss_pred HHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEEEE
Q 002408 394 GKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYK 473 (927)
Q Consensus 394 ~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~ 473 (927)
.+++...+.|.+++||||||||.+|||.||+++++..++++.+..+.++.++...|.+.|..+..++.++|.++|+|+++
T Consensus 84 ~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~ 163 (367)
T 2y6e_A 84 TQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFK 163 (367)
T ss_dssp HHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEe
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred EEEEcCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEE
Q 002408 474 STLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLL 553 (927)
Q Consensus 474 s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~ 553 (927)
++++|..|+++|.++|+|++|+||||....+.+.+.+
T Consensus 164 s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~------------------------------------------- 200 (367)
T 2y6e_A 164 STLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPM------------------------------------------- 200 (367)
T ss_dssp EEEECTTTCCEEEEEEEESSEEEECCC-----------------------------------------------------
T ss_pred eeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeee-------------------------------------------
Confidence 9999999999999999999999999865321100000
Q ss_pred EEEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCCCC
Q 002408 554 AEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLS 633 (927)
Q Consensus 554 ~e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~ 633 (927)
T Consensus 201 -------------------------------------------------------------------------------- 200 (367)
T 2y6e_A 201 -------------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCCcc
Q 002408 634 GADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQK 713 (927)
Q Consensus 634 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (927)
T Consensus 201 -------------------------------------------------------------------------------- 200 (367)
T 2y6e_A 201 -------------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcccc
Q 002408 714 DSILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHR 793 (927)
Q Consensus 714 ~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~ 793 (927)
|.+. ......++|++||+.|+++|.|+++|.|+|++|++++
T Consensus 201 ---------------~~~~------------------------~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~ 241 (367)
T 2y6e_A 201 ---------------LQPQ------------------------KKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQ 241 (367)
T ss_dssp ------------------------------------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEE
T ss_pred ---------------eccc------------------------cccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCCc
Confidence 0000 0002346999999999999999999999999999999
Q ss_pred eEEEEEEeeeCCCeEEEEEeceeeecccccccceeeeccCCCcccccccccCCCCceEEEEEEEEEeeccCCCCeEEEEE
Q 002408 794 QATKKLDLWMLPDVLVFHLKRFSYSRYLKNKLDTFVNFPILNLDLSKYMKSKDGESYVYDLFAISNHYGGLGGGHYTAYA 873 (927)
Q Consensus 794 ~a~K~~~I~~lP~iLiIhLKRF~~~~~~~~Ki~~~V~FPl~~LDls~~~~~~~~~~~~YdL~AVi~H~G~l~~GHYtAy~ 873 (927)
.|+|++.|+++|+||+||||||.++++.+.|+++.|+||++.|||++|+..+......|+|+|||+|.|++++||||||+
T Consensus 242 ~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~~ 321 (367)
T 2y6e_A 242 QATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGAMGVGHYTAYA 321 (367)
T ss_dssp CCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECSSSSCEEEEEE
T ss_pred eEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCCCCCCCeeeEEE
Confidence 99999999999999999999999998888999999999977899999999877677899999999999999999999999
Q ss_pred EeCCCCCEEEECCceeeecCcCcccCCceEEEEEEEecCC
Q 002408 874 KLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSK 913 (927)
Q Consensus 874 k~~~~~~Wy~fnDs~V~~v~~~~V~s~~AYlLFY~R~~~~ 913 (927)
|+..+++||.|||+.|+++++++|.+.+||||||+|++.+
T Consensus 322 ~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~ 361 (367)
T 2y6e_A 322 KNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDE 361 (367)
T ss_dssp ECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC-
T ss_pred EcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCC
Confidence 9877899999999999999999999999999999999865
|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus} | Back alignment and structure |
|---|
| >4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A | Back alignment and structure |
|---|
| >2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} | Back alignment and structure |
|---|
| >2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927} | Back alignment and structure |
|---|
| >2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A | Back alignment and structure |
|---|
| >3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A | Back alignment and structure |
|---|
| >3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... | Back alignment and structure |
|---|
| >3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A | Back alignment and structure |
|---|
| >1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S | Back alignment and structure |
|---|
| >3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B | Back alignment and structure |
|---|
| >1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B | Back alignment and structure |
|---|
| >1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A | Back alignment and structure |
|---|
| >4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I | Back alignment and structure |
|---|
| >2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B | Back alignment and structure |
|---|
| >2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C | Back alignment and structure |
|---|
| >3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A | Back alignment and structure |
|---|
| >2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B | Back alignment and structure |
|---|
| >2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A | Back alignment and structure |
|---|
| >1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
| >1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A | Back alignment and structure |
|---|
| >2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A | Back alignment and structure |
|---|
| >4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A* | Back alignment and structure |
|---|
| >2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A | Back alignment and structure |
|---|
| >1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 927 | ||||
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 1e-44 | |
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 7e-41 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 2e-39 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 1e-38 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 3e-36 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 8e-21 | |
| d1w6va1 | 120 | d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hy | 2e-32 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 1e-21 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 2e-21 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 3e-20 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 5e-20 |
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 8 species: Human (Homo sapiens) [TaxId: 9606]
Score = 162 bits (410), Expect = 1e-44
Identities = 91/190 (47%), Positives = 125/190 (65%), Gaps = 1/190 (0%)
Query: 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLL 376
L GL+NLGNTC+MNS LQCL + P LA YF + Y D+IN N LG GE+A FG ++
Sbjct: 14 ALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIM 73
Query: 377 RKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIE 436
+ LW+ ++P+ FK + + QF+GY+Q DSQELL FL+DGLHEDLN+ + +
Sbjct: 74 KALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYK 133
Query: 437 MKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTL 496
+++ D + A W+ HK N+S+IV +FQGQ+KST+ C C K S TF+ FMYL+L
Sbjct: 134 EENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSL 193
Query: 497 PLPSTVTRTM 506
PL ST T+
Sbjct: 194 PLASTSKCTL 203
|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d1w6va1 d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hydrolase 15 {Human (Homo sapiens) [TaxId: 9606]} Length = 120 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
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| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
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| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
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| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 927 | |||
| d1nbfa_ | 347 | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU | 100.0 | |
| d2gfoa1 | 348 | Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho | 100.0 | |
| d2hd5a1 | 336 | Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum | 100.0 | |
| d2ayna1 | 383 | Ubiquitin carboxyl-terminal hydrolase 14 {Human (H | 100.0 | |
| d1vjva_ | 397 | Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y | 100.0 | |
| d1w6va1 | 120 | Ubiquitin carboxyl-terminal hydrolase 15 {Human (H | 99.92 | |
| d1t0ya_ | 90 | Ubiquitin-like domain of tubulin folding cofactor | 94.58 | |
| d1yqba1 | 84 | Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | 93.36 | |
| d1wjna_ | 97 | Tubulin-folding protein TbcE {Mouse (Mus musculus) | 93.06 | |
| d1euvb_ | 79 | SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy | 92.52 | |
| d1j8ca_ | 103 | Ubiquitin-like N-terminal domain of PLIC-2 {Human | 92.47 | |
| d1v6ea_ | 95 | Ubiquitin-like domain of tubulin folding cofactor | 92.44 | |
| d2bwfa1 | 73 | DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.66 | |
| d1wxva1 | 81 | Bag-family molecular chaperone regulator-1 {Human | 90.85 | |
| d1v86a_ | 95 | hypothetical D7wsu128e protein {Mouse (Mus musculu | 90.1 | |
| d1wx8a1 | 83 | 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] | 89.39 | |
| d1wjua_ | 100 | NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens | 88.81 | |
| d1z2ma2 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 88.77 | |
| d1zkha1 | 86 | Splicing factor 3 subunit 1, C-terminal domain {Hu | 88.6 | |
| d1m94a_ | 73 | Ubiquitin-like modifier protein hub1 {Baker's yeas | 87.72 | |
| d1ogwa_ | 76 | Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | 87.71 | |
| d1v5oa_ | 102 | 1700011n24rik protein {Mouse (Mus musculus) [TaxId | 87.31 | |
| d1uh6a_ | 100 | Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu | 86.98 | |
| d1wy8a1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 86.68 | |
| d1wh3a_ | 87 | 2'-5'-oligoadenylate synthetase-like protein, OASL | 86.47 | |
| d2uyzb1 | 77 | SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax | 86.47 | |
| d1wxma1 | 73 | A-Raf proto-oncogene serine/threonine-protein kina | 86.27 | |
| d1we6a_ | 111 | Splicing factor 3 subunit 1, C-terminal domain {Th | 85.87 | |
| d1c1yb_ | 77 | c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]} | 84.9 | |
| d1bt0a_ | 73 | Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI | 84.39 | |
| d2c9wb1 | 103 | Elongin B {Human (Homo sapiens) [TaxId: 9606]} | 83.71 | |
| d1oqya4 | 77 | Ubiquitin-like domain of Rad23 homolog A (Hhr23a) | 82.85 | |
| d2faza1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 82.55 | |
| d1z2ma1 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 82.15 | |
| d1ttna1 | 80 | Dendritic cell-derived ubiquitin-like protein {Hum | 82.11 | |
| d2zeqa1 | 78 | Ubiquitin-like domain of parkin {Mouse (Mus muscul | 81.78 | |
| d1v5ta_ | 90 | 8430435i17rik protein {Mouse (Mus musculus) [TaxId | 81.45 |
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-57 Score=509.58 Aligned_cols=297 Identities=26% Similarity=0.423 Sum_probs=255.1
Q ss_pred CCCCccccccCCCcchHHHHHHHHhCChHHHHHHHhcCCcccccCCCCCchhHHHHHHHHHHHHHhcCCCCccChHHHHH
Q 002408 315 EKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKG 394 (927)
Q Consensus 315 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~p~~~~~ 394 (927)
+.+|++||.|+||||||||+||||+++|+|+++++..-.. ......++..+|+.||..|+.+. .++.|..+..
T Consensus 2 ~~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~------~~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~~~~ 74 (347)
T d1nbfa_ 2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTE------GDDSSKSVPLALQRVFYELQHSD-KPVGTKKLTK 74 (347)
T ss_dssp CSSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCT------TCCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHH
T ss_pred CCCCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCcc------CCcccchHHHHHHHHHHHHhcCC-CCcChHHHHH
Confidence 4689999999999999999999999999999999764111 11223468889999999998854 5788888887
Q ss_pred HHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHhhhhccCCcccccCCCCCChHHHHHHHHHhhcccCCCccccceeEEEEE
Q 002408 395 KLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKS 474 (927)
Q Consensus 395 ~l~~~~~~f~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~~~~~~~~~~~~~~a~~~w~~~~~~~~sii~~lF~G~~~s 474 (927)
.++ .+.|.++.|||||||+.+||+.|++++.... ..++|.++|.|.+.+
T Consensus 75 ~~~--~~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~-----------------------------~~~~i~~lF~g~~~~ 123 (347)
T d1nbfa_ 75 SFG--WETLDSFMQHDVQELCRVLLDNVENKMKGTC-----------------------------VEGTIPKLFRGKMVS 123 (347)
T ss_dssp HTT--CCGGGGGSCBCHHHHHHHHHHHHHHHHTTST-----------------------------TTTHHHHHHCEEEEE
T ss_pred hhc--hhhcchHHHHHHHHHHHHHHHHHHHHHhhcc-----------------------------ccccccceeceEEEE
Confidence 774 3568889999999999999999999885422 246699999999999
Q ss_pred EEEcCCCCCeeeeecCCeeEeecCCCCceeEEEEEEEecCCCCCcccEEEEeCCCCCHHHHHHHHHhhcCCCCCCceEEE
Q 002408 475 TLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKIDEGLLLA 554 (927)
Q Consensus 475 ~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~v~~~~~d~~~~p~~~~~~~~k~~~~~~l~~~l~~~~~~~~~~~l~~~ 554 (927)
+++|..|++.+.++|+|+.|+|++|..
T Consensus 124 ~~~C~~C~~~s~~~e~f~~l~L~i~~~----------------------------------------------------- 150 (347)
T d1nbfa_ 124 YIQCKEVDYRSDRREDYYDIQLSIKGK----------------------------------------------------- 150 (347)
T ss_dssp EEEESSSCCEEEEEEEESSEEEECTTC-----------------------------------------------------
T ss_pred eEEeCCccceeeeeccccccccccccc-----------------------------------------------------
Confidence 999999999999999999999998621
Q ss_pred EEeCCeeEEeecCCcccccccCCCCeEEEEEecCCCCCceEEEEeeecccccccccccCCCceeecccEEEEecCCCCCH
Q 002408 555 EVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQEKSASDYLKGSERKLFGAPLVTYLEEEHLSG 634 (927)
Q Consensus 555 e~~~~~~~~~~~d~~~~~~~i~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~P~~~~~~~~~~~~ 634 (927)
T Consensus 151 -------------------------------------------------------------------------------- 150 (347)
T d1nbfa_ 151 -------------------------------------------------------------------------------- 150 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhccccccccccccccCCCCCCCCcccccccccCCCCCcccccccccccccceeeEEEecCCCCccCCCccC
Q 002408 635 ADIDIAVSKLLSPLRRTYSSAKAHGGKENGFLPEVIDELSNSHNESVETAELEDLCSRELSFQLSLTDERISSCKPIQKD 714 (927)
Q Consensus 635 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (927)
T Consensus 151 -------------------------------------------------------------------------------- 150 (347)
T d1nbfa_ 151 -------------------------------------------------------------------------------- 150 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCceEEEEeecCcccccCCcccccccccccccccccccccCCCCCHHHHHHHhhCCCccCCCCCCCCccCcccce
Q 002408 715 SILKPGKHIKVLLDWTDDVHELYDPSYIKDLPVVHKTGFTVKKTRQEAISLFSCLDAFLTEEPLGPDDMWYCPQCKEHRQ 794 (927)
Q Consensus 715 ~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~n~w~C~~Ck~~~~ 794 (927)
.++.+||+.++.+|.|.+++.|.|..| ..+.
T Consensus 151 ------------------------------------------------~~~~~~l~~~~~~e~l~~~~~~~~~~~-~~~~ 181 (347)
T d1nbfa_ 151 ------------------------------------------------KNIFESFVDYVAVEQLDGDNKYDAGEH-GLQE 181 (347)
T ss_dssp ------------------------------------------------CBHHHHHHHHTCCEEECGGGCEECSTT-CEEC
T ss_pred ------------------------------------------------cchhhhHHhhcchheeccccccccccC-ccee
Confidence 157889999999999999887777665 5678
Q ss_pred EEEEEEeeeCCCeEEEEEeceeeec--ccccccceeeeccCCCcccccccccCCC-CceEEEEEEEEEeeccCCCCeEEE
Q 002408 795 ATKKLDLWMLPDVLVFHLKRFSYSR--YLKNKLDTFVNFPILNLDLSKYMKSKDG-ESYVYDLFAISNHYGGLGGGHYTA 871 (927)
Q Consensus 795 a~K~~~I~~lP~iLiIhLKRF~~~~--~~~~Ki~~~V~FPl~~LDls~~~~~~~~-~~~~YdL~AVi~H~G~l~~GHYtA 871 (927)
|.|++.|+++|+||+||||||.++. ....|+++.|.|| +.|||++|+..... ....|+|+|||+|.|...+|||+|
T Consensus 182 ~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~ 260 (347)
T d1nbfa_ 182 AEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVV 260 (347)
T ss_dssp EEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEEEETTEEEEEE
T ss_pred ccEEEEEEecCChheEeeeeeeeccccCcccccCceEeee-eeeccccccccccccCccceeeEEEEEecCCCCCCEEEE
Confidence 9999999999999999999999874 4567999999999 58999999986543 457899999999999889999999
Q ss_pred EEEeCCCCCEEEECCceeeecCcCcccC---------------CceEEEEEEEecC
Q 002408 872 YAKLIDENRWYHFDDSHVSPVSEGDIKT---------------SAAYVLFYRRVKS 912 (927)
Q Consensus 872 y~k~~~~~~Wy~fnDs~V~~v~~~~V~s---------------~~AYlLFY~R~~~ 912 (927)
|+|+..+++||.|||+.|++|++++|.. .+||||||+|++.
T Consensus 261 ~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~~~ 316 (347)
T d1nbfa_ 261 YLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK 316 (347)
T ss_dssp EECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEEEGGG
T ss_pred eeecCCCCEEEEEECCceEECCHHHHHHhhcCCCccccccCCCCCEEEEEEEecCc
Confidence 9998788999999999999999888852 4699999999874
|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1w6va1 d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hydrolase 15 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1c1yb_ d.15.1.5 (B:) c-Raf1 RBD {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|